Query 023067
Match_columns 288
No_of_seqs 226 out of 416
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 15:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 3.2E-23 1.1E-27 167.5 12.1 93 18-154 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 8.3E-22 2.8E-26 155.6 11.2 87 16-150 1-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 2.7E-21 9.3E-26 154.9 11.9 89 15-151 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.8 4.3E-21 1.5E-25 151.0 11.0 84 18-150 2-87 (87)
5 3toe_A MTH10B, DNA/RNA-binding 99.7 1.5E-17 5.1E-22 132.1 10.6 89 17-151 3-91 (91)
6 2bky_X DNA/RNA-binding protein 99.7 9.1E-18 3.1E-22 132.7 9.0 84 17-151 5-88 (89)
7 1vm0_A Unknown protein; struct 99.6 8.3E-15 2.8E-19 123.0 10.6 90 16-152 18-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.6 3.9E-14 1.3E-18 120.1 13.1 107 7-150 15-140 (140)
9 3iab_A Ribonucleases P/MRP pro 98.2 1.8E-05 6.1E-10 68.2 11.5 95 21-152 47-146 (158)
10 1b34_A Protein (small nuclear 90.5 0.049 1.7E-06 44.3 0.0 13 137-149 59-71 (119)
11 1h2v_Z 20 kDa nuclear CAP bind 80.5 0.24 8.3E-06 39.9 -0.8 38 140-177 63-102 (156)
12 3q2s_C Cleavage and polyadenyl 62.1 1.6 5.4E-05 38.1 -0.1 36 142-177 96-133 (229)
13 2ek0_A Stage V sporulation pro 61.9 27 0.00091 27.4 6.9 48 19-68 2-50 (90)
14 3beg_B Splicing factor, argini 55.0 5.5 0.00019 30.5 1.9 35 138-177 38-72 (115)
15 2lkz_A RNA-binding protein 5; 52.5 2.5 8.7E-05 32.0 -0.4 36 143-178 38-75 (95)
16 2dgx_A KIAA0430 protein; RRM d 47.5 6.7 0.00023 28.8 1.3 39 138-177 35-73 (96)
17 2ee7_A Sperm flagellar protein 44.3 22 0.00074 29.1 4.0 44 53-97 36-79 (127)
18 3pgw_S U1-70K; protein-RNA com 39.7 61 0.0021 30.9 7.0 41 137-177 123-165 (437)
19 2dnm_A SRP46 splicing factor; 38.2 15 0.00051 26.9 1.9 36 142-177 39-76 (103)
20 2cqi_A Nucleolysin TIAR; RNA r 36.9 11 0.00037 27.7 1.0 38 140-177 39-76 (103)
21 1x4e_A RNA binding motif, sing 34.8 15 0.00051 25.8 1.4 38 141-178 30-69 (85)
22 2cq3_A RNA-binding protein 9; 34.1 13 0.00045 27.2 1.0 37 141-177 40-76 (103)
23 3p5t_L Cleavage and polyadenyl 32.9 4.8 0.00016 29.1 -1.6 36 142-177 29-66 (90)
24 3ns6_A Eukaryotic translation 31.0 8 0.00027 28.7 -0.6 37 141-177 37-75 (100)
25 2e5h_A Zinc finger CCHC-type a 30.8 17 0.00059 25.9 1.2 37 141-177 41-79 (94)
26 3v4m_A Splicing factor U2AF 65 30.0 14 0.00046 28.3 0.5 42 136-177 35-80 (105)
27 4fxv_A ELAV-like protein 1; RN 29.6 8.3 0.00028 28.8 -0.7 40 138-177 41-82 (99)
28 3s8s_A Histone-lysine N-methyl 29.6 8.1 0.00028 29.6 -0.8 39 139-177 29-69 (110)
29 2cq4_A RNA binding motif prote 28.9 32 0.0011 25.6 2.5 34 142-176 51-86 (114)
30 2dnz_A Probable RNA-binding pr 28.3 19 0.00066 25.7 1.1 36 142-177 31-68 (95)
31 4f25_A Polyadenylate-binding p 28.1 6.8 0.00023 29.9 -1.5 36 142-177 31-66 (115)
32 1uaw_A Mouse-musashi-1; RNP-ty 27.2 19 0.00065 24.6 0.8 35 143-177 27-63 (77)
33 1x5u_A Splicing factor 3B subu 27.0 15 0.00051 26.9 0.3 37 141-177 40-78 (105)
34 1x4h_A RNA-binding protein 28; 26.9 14 0.00049 27.2 0.1 37 141-177 40-78 (111)
35 1x5s_A Cold-inducible RNA-bind 26.9 16 0.00056 26.5 0.5 36 142-177 38-75 (102)
36 2hgm_A HNRPF protein, heteroge 26.3 23 0.00079 28.2 1.3 31 145-175 72-103 (126)
37 3ex7_B RNA-binding protein 8A; 26.0 19 0.00066 27.2 0.8 38 140-177 46-85 (126)
38 1whw_A Hypothetical protein ri 26.0 16 0.00054 26.5 0.3 36 142-177 34-71 (99)
39 2kxn_B Transformer-2 protein h 25.9 22 0.00077 27.8 1.1 38 140-177 70-109 (129)
40 2dgp_A Bruno-like 4, RNA bindi 25.2 14 0.00048 27.1 -0.2 37 141-177 38-76 (106)
41 2cqb_A Peptidyl-prolyl CIS-tra 24.8 15 0.00052 26.7 -0.1 36 142-177 38-75 (102)
42 1s79_A Lupus LA protein; RRM, 24.5 20 0.00068 27.1 0.6 35 140-174 35-70 (103)
43 2lxi_A RNA-binding protein 10; 24.4 6.9 0.00024 28.7 -2.0 34 143-176 29-64 (91)
44 2cpi_A CCR4-NOT transcription 24.3 20 0.00068 26.9 0.6 41 137-177 39-84 (111)
45 1iqt_A AUF1, heterogeneous nuc 24.1 16 0.00056 24.9 -0.0 34 142-175 25-60 (75)
46 2dgs_A DAZ-associated protein 23.6 23 0.00077 25.7 0.7 35 140-174 34-70 (99)
47 2lcw_A RNA-binding protein FUS 29.2 17 0.00058 27.3 0.0 32 146-177 45-78 (116)
48 2dh8_A DAZ-associated protein 22.7 22 0.00074 26.1 0.4 35 141-175 41-77 (105)
49 3n9u_C Cleavage and polyadenyl 21.8 12 0.00041 30.5 -1.2 36 142-177 83-120 (156)
50 2err_A Ataxin-2-binding protei 21.8 13 0.00045 27.9 -0.9 36 142-177 55-90 (109)
51 2cph_A RNA binding motif prote 21.6 27 0.00091 25.5 0.8 36 141-176 40-78 (107)
52 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.6 21 0.00071 27.3 0.2 39 139-177 86-126 (140)
53 1wez_A HnRNP H', FTP-3, hetero 21.6 11 0.00038 28.3 -1.4 31 144-175 42-74 (102)
54 2khc_A Testis-specific RNP-typ 20.7 26 0.0009 26.2 0.6 38 139-176 63-102 (118)
55 3mdf_A Peptidyl-prolyl CIS-tra 20.4 17 0.00057 25.4 -0.6 36 142-177 33-70 (85)
56 2cq0_A Eukaryotic translation 20.2 14 0.00048 27.0 -1.1 37 141-177 40-78 (103)
57 2x1f_A MRNA 3'-END-processing 20.2 24 0.00083 25.4 0.3 36 142-177 28-65 (96)
58 2hvz_A Splicing factor, argini 20.1 24 0.00082 25.6 0.2 34 142-178 26-59 (101)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.89 E-value=3.2e-23 Score=167.50 Aligned_cols=93 Identities=32% Similarity=0.456 Sum_probs=85.7
Q ss_pred CCeEEEcCCCchhHHHHHHH-HHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067 18 ENEIRITTQGAIRNYITYAT-TLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ 96 (288)
Q Consensus 18 ~NeIRVt~~~~irnyV~~A~-~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 96 (288)
+|+|||++++. +|||.+|+ .+|+ +++++|+|||+|+||+|||+||||||
T Consensus 6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk---------------------------- 55 (102)
T 2h9u_A 6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVR---------------------------- 55 (102)
T ss_dssp CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHH----------------------------
Confidence 69999999987 89999999 9998 57999999999999999999999999
Q ss_pred hhHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCCCC
Q 023067 97 LAICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELN 154 (288)
Q Consensus 97 ~~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ld 154 (288)
+|+ ++|| |.++|+|+++.|.|+ +|+ ..+|+||+|+|+|+++|+.
T Consensus 56 --------~r~~~gl~~q~i~i~s~~i~d~~e---~g~---~~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 56 --------KRFAKNIEIKDIKIDSQEIEVQTP---EGQ---TRTRRVSSIEICLEKAGES 101 (102)
T ss_dssp --------HHTTTTEEEEEEEEEEEEEEEECT---TSC---EEEEEEEEEEEEEEECSSC
T ss_pred --------HhccCCceEEEEEEeeEEEecccc---CCc---cceeEeeeEEEEEEccCCC
Confidence 888 8999 999999999999865 565 3899999999999998863
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.87 E-value=8.3e-22 Score=155.59 Aligned_cols=87 Identities=30% Similarity=0.537 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067 16 INENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN 95 (288)
Q Consensus 16 ~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~ 95 (288)
+++|+|+|++++ +++||.+|+.+|+ +++++|+|||+|+||+|||+||||||
T Consensus 1 ~~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk--------------------------- 51 (89)
T 1nfj_A 1 MAEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVR--------------------------- 51 (89)
T ss_dssp --CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHH---------------------------
T ss_pred CCCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHH---------------------------
Confidence 368999999998 8999999999999 57999999999999999999999999
Q ss_pred hhhHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067 96 QLAICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST 150 (288)
Q Consensus 96 ~~~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk 150 (288)
+|+ ++|| |.++|+|+++.| |+| .+|++|+|+|+|++
T Consensus 52 ---------~r~~~gl~i~~i~i~s~~i~~-----e~g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 52 ---------NRFMPGVKVKEIKIDTEELES-----EQG-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp ---------HHTCTTCEEEEEEEEEEECCC-----BTT-----BCCEEEEEEEEEEC
T ss_pred ---------HhccCCcEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence 777 9999 999999998875 355 67999999999985
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.86 E-value=2.7e-21 Score=154.94 Aligned_cols=89 Identities=33% Similarity=0.503 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHh
Q 023067 15 PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIY 94 (288)
Q Consensus 15 ~~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~ 94 (288)
+.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk-------------------------- 57 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVR-------------------------- 57 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH--------------------------
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHH--------------------------
Confidence 4578999999999 9999999999999 57999999999999999999999999
Q ss_pred hhhhHhhhhhcccCc--c-eeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067 95 NQLAICIIEQKRIPQ--L-HQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR 151 (288)
Q Consensus 95 ~~~~~~~~~~~ri~g--L-hQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd 151 (288)
+|+.+ | ||.++|+|+++.| |+| .+|+||+|+|+|++.
T Consensus 58 ----------~r~~~~~l~~~~i~i~s~~i~~-----e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 58 ----------NRFLPDKIEIKEIRVGSQVVTS-----QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp ----------HHTSTTTEEEEEEEEEEEEEEE-----TTS-----CEEEEEEEEEEEEEC
T ss_pred ----------HhccCCceEEEEEEeeeEEEec-----CCC-----cEEEeeEEEEEEEcC
Confidence 78754 8 8999999999977 345 689999999999863
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.85 E-value=4.3e-21 Score=150.96 Aligned_cols=84 Identities=30% Similarity=0.527 Sum_probs=73.1
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067 18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL 97 (288)
Q Consensus 18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 97 (288)
+|+|+|+++ .+++||.+|+.+|++ + ++|+|||+|+||+|||+||||||
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk----------------------------- 49 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIR----------------------------- 49 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHH-----------------------------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHH-----------------------------
Confidence 699999999 999999999999996 6 99999999999999999999999
Q ss_pred hHhhhhhccc-Ccce-eeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067 98 AICIIEQKRI-PQLH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFST 150 (288)
Q Consensus 98 ~~~~~~~~ri-~gLh-Q~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk 150 (288)
+|+ ++|| |.++|+|+++.| |+| .+|++|+|+|+|++
T Consensus 50 -------~r~~~~l~v~~i~i~s~~i~~-----e~g-----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 50 -------NRFIKDIKIKKIEIGTDKVKN-----PDG-----REVNVSTIEIVLAK 87 (87)
T ss_dssp -------HHTCTTCEEEEEEEEEEC-----------------CCCEEEEEEEEEC
T ss_pred -------HhccCCeEEEEEEEeEEEEEc-----CCC-----cEEEeeEEEEEEEC
Confidence 777 8899 999999999887 244 67999999999985
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.73 E-value=1.5e-17 Score=132.09 Aligned_cols=89 Identities=30% Similarity=0.434 Sum_probs=78.2
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ 96 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 96 (288)
++|.|+|.++ .+++||.+|+.+|+ ++.++|+|||+|+||+|||++|||||
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k---------------------------- 52 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVR---------------------------- 52 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHH----------------------------
Confidence 3688999988 59999999999999 57999999999999999999999999
Q ss_pred hhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067 97 LAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR 151 (288)
Q Consensus 97 ~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd 151 (288)
+|+.. .+++.++++...|.+.++| .+|+||+|+|+|++|
T Consensus 53 --------~R~~~---~v~v~~I~I~se~~~~e~G-----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 53 --------NRFIP---DIQIENIDICTEEIIGNEG-----TATNVSAIEIQLRKD 91 (91)
T ss_dssp --------HHTCT---TCEEEEEEEEEEEEECTTS-----SEEEEEEEEEEEEC-
T ss_pred --------HhccC---CcEEEEEEeeeEEeecCCC-----ceeEeeEEEEEEECC
Confidence 67653 5888889999999999888 578999999999986
No 6
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.73 E-value=9.1e-18 Score=132.68 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ 96 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 96 (288)
++|.|+|+++ .++|||.+|+.+|+ +++++|+|||+|+||+|||+||||||
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk---------------------------- 54 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLK---------------------------- 54 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHH----------------------------
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHH----------------------------
Confidence 3567777776 89999999999999 58999999999999999999999999
Q ss_pred hhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067 97 LAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR 151 (288)
Q Consensus 97 ~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd 151 (288)
+|+.+.||+.+|..-. |+ ..+|+||+|+|+|++.
T Consensus 55 --------~R~~~~~~i~~i~i~s--------e~-----~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 55 --------DRLGDGVQLVNVQTGS--------EV-----RDRRRISYILLRLKRV 88 (89)
T ss_dssp --------HHHGGGEEEEEEEEEE--------EE-----ETTEEEEEEEEEEEEC
T ss_pred --------HhccCceEEEEEEecc--------cc-----CcceEeeeEEEEEEec
Confidence 8888888886654321 11 5679999999999863
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.58 E-value=8.3e-15 Score=122.96 Aligned_cols=90 Identities=24% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCCeEEEcCC-CchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHh
Q 023067 16 INENEIRITTQ-GAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIY 94 (288)
Q Consensus 16 ~~~NeIRVt~~-~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~ 94 (288)
..+|+|+|+.+ ..+++||.+|+.+|+ ++++|+|||||.||++||+||||||
T Consensus 18 ~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLk-------------------------- 69 (130)
T 1vm0_A 18 QKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILK-------------------------- 69 (130)
T ss_dssp -CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHH--------------------------
T ss_pred CCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHH--------------------------
Confidence 46999999964 678899999999998 5799999999999999999999999
Q ss_pred hhhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCC
Q 023067 95 NQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRE 152 (288)
Q Consensus 95 ~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ 152 (288)
+|....++.+.++|+++.+. ++ ....++|.|.|+|.+.+
T Consensus 70 ----------rr~l~~ikkI~t~t~~i~~~-----~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 70 ----------NNGFAVEKKIMTSIVDIKDD-----AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp ----------HTTSEEEEEEEEEEEEEC---------------CEEEEEEEEEEEECT
T ss_pred ----------hcCcceEEEEEeeeEEeccC-----CC----CcccccceEEEEEEecC
Confidence 78777777788888887543 11 13345799999999654
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=3.9e-14 Score=120.09 Aligned_cols=107 Identities=13% Similarity=0.153 Sum_probs=85.3
Q ss_pred ccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhhc---CCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccC
Q 023067 7 VEKPKPESPIN----ENEIRITTQGAIRNYITYATTLLQEK---HAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLS 79 (288)
Q Consensus 7 v~~~~~~~~~~----~NeIRVt~~~~irnyV~~A~~lL~~~---~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~ 79 (288)
+-++.+-.|.. +|.|+|++++.|.+.|..|.+||++- +.++|+|+|||+||+||+++|..|+
T Consensus 15 irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq----------- 83 (140)
T 3iab_B 15 VTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQ----------- 83 (140)
T ss_dssp CEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHH-----------
T ss_pred cCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHh-----------
Confidence 33444444544 89999999999999999999999852 5799999999999999999999998
Q ss_pred CCcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEeccccccccCC------------CcceeEeeeeeeEEEE
Q 023067 80 PISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEG------------LVPVEMTRHVSMISIT 147 (288)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eeg------------l~~~~v~R~VsaI~It 147 (288)
.. .++.-...++||+++|+++|.++. .+.....|+||+|+|+
T Consensus 84 -------------------------~~-~~~~V~V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~Veir 137 (140)
T 3iab_B 84 -------------------------DQ-KNKKIEVYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELR 137 (140)
T ss_dssp -------------------------HT-TCCCEEEEEEEEEEEEECC--------------------CEEEEEEEEEEEE
T ss_pred -------------------------hc-CCEEEEEEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEE
Confidence 32 468888999999999999998654 5678899999999999
Q ss_pred eeC
Q 023067 148 FST 150 (288)
Q Consensus 148 LSk 150 (288)
|..
T Consensus 138 Iy~ 140 (140)
T 3iab_B 138 IYV 140 (140)
T ss_dssp EEC
T ss_pred EeC
Confidence 863
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.8e-05 Score=68.18 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=70.9
Q ss_pred EEEcCCCchhHHHHHHHHHHhh-----cCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067 21 IRITTQGAIRNYITYATTLLQE-----KHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN 95 (288)
Q Consensus 21 IRVt~~~~irnyV~~A~~lL~~-----~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~ 95 (288)
+.|+++.+|+..|+.-.++|.. ...+.|.|.+.|..|.|++++.||+|. +
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk----~--------------------- 101 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKK----G--------------------- 101 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHH----H---------------------
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHH----H---------------------
Confidence 3499999999999999888851 246899999999999999999999991 0
Q ss_pred hhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCC
Q 023067 96 QLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRE 152 (288)
Q Consensus 96 ~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ 152 (288)
.+.+-+.|||++++++...+..=. -| -++....||.+-+.+++.+
T Consensus 102 -------~~~~~~~l~Q~NkL~~f~~v~~gr--NE---Lle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 102 -------YIKNNKKIYQWNKLTSFDIKREGR--NE---LQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp -------HHTTTCCCEEEEEEEEEEEC------------CCCCEEEEEEEEEEESSS
T ss_pred -------hhcCCccHHHHhhhhhhccCCccc--cH---HHHhhcCCCEEEEEEeccc
Confidence 124556799999999975543211 12 2466679999888888754
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=90.53 E-value=0.049 Score=44.25 Aligned_cols=13 Identities=8% Similarity=0.028 Sum_probs=5.9
Q ss_pred EeeeeeeEEEEee
Q 023067 137 MTRHVSMISITFS 149 (288)
Q Consensus 137 v~R~VsaI~ItLS 149 (288)
+.|-.+++.|.++
T Consensus 59 ~IRG~nI~~I~~p 71 (119)
T 1b34_A 59 SIRGNNIRYFILP 71 (119)
T ss_dssp EECGGGEEEEECC
T ss_pred EEcCCeEEEEEec
Confidence 3444444444443
No 11
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=80.47 E-value=0.24 Score=39.92 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=29.1
Q ss_pred eeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 140 HVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.-++..|.|.+++.+ .+.++|++|.+.++++.|.+.++
T Consensus 63 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 63 SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 345566777777655 56799999999999999998764
No 12
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=62.07 E-value=1.6 Score=38.14 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=29.3
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.++.|+|.+|..+ .+++||++|.+.++++.|.+.++
T Consensus 96 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 96 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred ceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 5667788877665 57899999999999999988654
No 13
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=61.90 E-value=27 Score=27.40 Aligned_cols=48 Identities=23% Similarity=0.423 Sum_probs=38.4
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEecc-HhHHHHHHHHHHHH
Q 023067 19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAINKTVAIAEIIK 68 (288)
Q Consensus 19 NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G-~AIsKAV~vAEILK 68 (288)
+.++|.++++....-..--..|.+. ..|.|.++| .|++.||.-.-|-+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe~--~~veiqAIGa~AvNqAVKAIAIAR 50 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRTK--GEVEVQAIGPQAVNQAVKAIAIAR 50 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHH--SEEEEEECSHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhcC--CceEEEEECHHHHHHHHHHHHHHH
Confidence 4678999998877766666677764 599999999 68998888777776
No 14
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=55.03 E-value=5.5 Score=30.49 Aligned_cols=35 Identities=9% Similarity=-0.057 Sum_probs=27.7
Q ss_pred eeeeeeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 138 TRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 138 ~R~VsaI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
...-+++.|.|.++ .++|+++.+.++++.|.+.++
T Consensus 38 ~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 38 REAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp GGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHT
T ss_pred HhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhC
Confidence 33445667777766 899999999999999998775
No 15
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=52.52 E-value=2.5 Score=31.95 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=29.9
Q ss_pred eEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHHH
Q 023067 143 MISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQQ 178 (288)
Q Consensus 143 aI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~~ 178 (288)
...|+|.+|+.+ .+++||+++.+.++++.|.+..+.
T Consensus 38 v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 38 VNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp GGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred EEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 446778888776 678999999999999999998863
No 16
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.50 E-value=6.7 Score=28.75 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=32.1
Q ss_pred eeeeeeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 138 TRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 138 ~R~VsaI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
...-++..|.|.+++.. ++++|+++.+.++++.|.+.++
T Consensus 35 ~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~ 73 (96)
T 2dgx_A 35 ARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLH 73 (96)
T ss_dssp HHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHT
T ss_pred cccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhC
Confidence 34445678888888877 8999999999999999998774
No 17
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.27 E-value=22 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=27.6
Q ss_pred ccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067 53 MGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL 97 (288)
Q Consensus 53 ~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 97 (288)
+-+-.+..+.|||||+ -.|-++++++.+++......-+.-++++
T Consensus 36 ~rRDFSdG~lvAEIl~-~y~Pk~Vdlh~y~~~~S~~~K~~NW~~l 79 (127)
T 2ee7_A 36 LSRDFSDGVLVAEVIK-FYFPKMVEMHNYVPANSLQQKLSNWGHL 79 (127)
T ss_dssp HHHHHTTSHHHHHHHH-HHCTTTCCCSSCCCCSSHHHHHHHHHHH
T ss_pred hhhhccchhHHHHHHH-HHCcCcccccccCCCCcHHHHHHhHHHH
Confidence 4466788999999999 3455667666666644443333333333
No 18
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=39.70 E-value=61 Score=30.88 Aligned_cols=41 Identities=5% Similarity=0.021 Sum_probs=32.8
Q ss_pred EeeeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 137 MTRHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 137 v~R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
|...-+++.|.|.++..+ .+++||++|.+.+++..|++.++
T Consensus 123 F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 123 FEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred HHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 444556777888887655 68899999999999999998764
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.25 E-value=15 Score=26.91 Aligned_cols=36 Identities=3% Similarity=-0.038 Sum_probs=28.9
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.+++.+ .+.++|+++.+.++++.|.+.++
T Consensus 39 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 39 RVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 4556777777654 67899999999999999998764
No 20
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.94 E-value=11 Score=27.66 Aligned_cols=38 Identities=5% Similarity=-0.096 Sum_probs=30.2
Q ss_pred eeeeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 140 HVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.-++..|.|..+....++++|+.+.+.++++.|.+.++
T Consensus 39 ~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 39 IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC
Confidence 33456677777766678999999999999999998764
No 21
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.83 E-value=15 Score=25.83 Aligned_cols=38 Identities=5% Similarity=-0.012 Sum_probs=29.4
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQQ 178 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~~ 178 (288)
-++..|.|.+++.+ .++++|+++.+.++++.|.+.++.
T Consensus 30 G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 30 GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 35566777776654 578899999999999999987754
No 22
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.05 E-value=13 Score=27.21 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=29.5
Q ss_pred eeeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++...+.++|+++.+.++++.|.+.++
T Consensus 40 G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 40 GKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp SCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 3455677777766678999999999999999988764
No 23
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=32.89 E-value=4.8 Score=29.14 Aligned_cols=36 Identities=11% Similarity=0.094 Sum_probs=26.6
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.+..|.|..|+.+ .+++||+++.+.++++.|.+.++
T Consensus 29 ~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~ 66 (90)
T 3p5t_L 29 DILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 66 (90)
T ss_dssp CCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGG
T ss_pred ceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcC
Confidence 3445666666655 57799999999999999988765
No 24
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=31.05 E-value=8 Score=28.70 Aligned_cols=37 Identities=8% Similarity=0.064 Sum_probs=29.4
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .+++||+++.+.++++.|.+.++
T Consensus 37 G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 75 (100)
T 3ns6_A 37 GKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFH 75 (100)
T ss_dssp SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 34556777777764 68999999999999999998764
No 25
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.85 E-value=17 Score=25.93 Aligned_cols=37 Identities=5% Similarity=0.004 Sum_probs=29.1
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .+.++|+++.+.++++.+.+.++
T Consensus 41 G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 41 GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 34567778877665 67899999999999999887653
No 26
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=29.96 E-value=14 Score=28.28 Aligned_cols=42 Identities=7% Similarity=-0.143 Sum_probs=34.3
Q ss_pred eEeeeeeeEEEEeeCCCCC----CCCCCccCCCCCCcchhhhHHHH
Q 023067 136 EMTRHVSMISITFSTRELN----KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 136 ~v~R~VsaI~ItLSkd~ld----~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.+.+.-++.+|.|+++..+ .++++|+.+.+.++++.|.+.++
T Consensus 35 ~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 35 ECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp HHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred HHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 4556677888888887754 57889999999999999999885
No 27
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=29.64 E-value=8.3 Score=28.84 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=31.0
Q ss_pred eeeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 138 TRHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 138 ~R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
...-++.+|.|.+|+.+ .+++||+.+.+.++++.|.+.++
T Consensus 41 ~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 41 SSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp HTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 33445677888887765 56789999999999999988764
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=29.59 E-value=8.1 Score=29.60 Aligned_cols=39 Identities=3% Similarity=-0.137 Sum_probs=30.8
Q ss_pred eeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 139 RHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 139 R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
..-++..|.|.+|+.+ .+++||+++.+.++++.|.+.++
T Consensus 29 ~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 29 KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 3445667777777765 57899999999999999998774
No 29
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.89 E-value=32 Score=25.58 Aligned_cols=34 Identities=6% Similarity=-0.006 Sum_probs=27.0
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
.+..|.|..++.+ .++++|+++.+.++++.|. .+
T Consensus 51 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l 86 (114)
T 2cq4_A 51 KVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 86 (114)
T ss_dssp CEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HH
T ss_pred CEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-Hc
Confidence 4556777777654 6789999999999999999 54
No 30
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.34 E-value=19 Score=25.70 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=28.3
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.+++.+ .+.++|+++.+.++++.|.+.++
T Consensus 31 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 31 KIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 4556777777654 57799999999999999998764
No 31
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=28.13 E-value=6.8 Score=29.88 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=27.5
Q ss_pred eeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
+++.|+|.+|.-..+++||+.+.+.++++.|.+.++
T Consensus 31 ~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 31 NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC
Confidence 445566666554467899999999999999988764
No 32
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.15 E-value=19 Score=24.59 Aligned_cols=35 Identities=6% Similarity=-0.011 Sum_probs=26.5
Q ss_pred eEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 143 MISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 143 aI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
+..|.|.+++.+ .++++|..+.+.++++.+.+..+
T Consensus 27 v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 27 VKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 345566666544 67899999999999999888653
No 33
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.97 E-value=15 Score=26.92 Aligned_cols=37 Identities=5% Similarity=0.153 Sum_probs=28.7
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 40 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 40 GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 34566777777654 67899999999999999988763
No 34
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.91 E-value=14 Score=27.23 Aligned_cols=37 Identities=3% Similarity=-0.086 Sum_probs=30.2
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .++++|+++.+.++++.|.+..+
T Consensus 40 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 40 GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 35567788877765 68899999999999999998874
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.86 E-value=16 Score=26.52 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=28.1
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.+++.+ .+.++|+++.+.++++.|.+.++
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 38 QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 4456677776655 57799999999999999998764
No 36
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=26.30 E-value=23 Score=28.22 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=26.2
Q ss_pred EEEeeCCCCC-CCCCCccCCCCCCcchhhhHH
Q 023067 145 SITFSTRELN-KNSPGYQSPHNAEQPKLQYRY 175 (288)
Q Consensus 145 ~ItLSkd~ld-~k~pGYQ~P~~~dqvk~~~~~ 175 (288)
.|+|.+|+.. .+++||++|.+.++++.|.+.
T Consensus 72 ~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 72 GITLPVDPEGKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp EEECCCCSSSSSCSEEEEEESSTTHHHHHHTT
T ss_pred EEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 6778877654 689999999999999999875
No 37
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=25.98 E-value=19 Score=27.25 Aligned_cols=38 Identities=3% Similarity=-0.107 Sum_probs=29.6
Q ss_pred eeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 140 HVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.-++..|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 46 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 46 YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 334566777777655 57899999999999999998774
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.97 E-value=16 Score=26.46 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=28.4
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.+++.+ .+.++|+++.+.++++.|.+.++
T Consensus 34 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 34 PLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 4566777777655 57889999999999999987764
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=25.86 E-value=22 Score=27.77 Aligned_cols=38 Identities=5% Similarity=0.014 Sum_probs=30.4
Q ss_pred eeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 140 HVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.-++..|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 70 ~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 70 YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 345667788877765 67899999999999999998764
No 40
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=25.17 E-value=14 Score=27.10 Aligned_cols=37 Identities=5% Similarity=0.003 Sum_probs=29.6
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .+.++|+.+.+.++++.|.+.++
T Consensus 38 G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (106)
T 2dgp_A 38 GKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALH 76 (106)
T ss_dssp SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhc
Confidence 34556777777665 67899999999999999998775
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.83 E-value=15 Score=26.73 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=27.9
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.+++.+ .+.++|+++.+.++++.|.+.++
T Consensus 38 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 38 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 3445667776655 67899999999999999998764
No 42
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.46 E-value=20 Score=27.10 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=27.6
Q ss_pred eeeeEEEEeeCCCCC-CCCCCccCCCCCCcchhhhH
Q 023067 140 HVSMISITFSTRELN-KNSPGYQSPHNAEQPKLQYR 174 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld-~k~pGYQ~P~~~dqvk~~~~ 174 (288)
.-++..|.|.+|+.. .+++||+++.+.++++.|.+
T Consensus 35 ~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 35 KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT
T ss_pred cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH
Confidence 445677778876643 68899999999999988887
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=24.43 E-value=6.9 Score=28.71 Aligned_cols=34 Identities=0% Similarity=-0.048 Sum_probs=26.8
Q ss_pred eEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHH
Q 023067 143 MISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 143 aI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
..+|+|.+|+.+ .+++||+++.+.++++.|.+..
T Consensus 29 v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 29 AREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred eEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 345667777765 6789999999999999988764
No 44
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.35 E-value=20 Score=26.91 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=31.0
Q ss_pred EeeeeeeEEEEeeCCCCC-----CCCCCccCCCCCCcchhhhHHHH
Q 023067 137 MTRHVSMISITFSTRELN-----KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 137 v~R~VsaI~ItLSkd~ld-----~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
+...-++..|.|.++..+ .++++|+++.+.++++.|.+.++
T Consensus 39 F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 39 FGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp TTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred hhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 344456677777777653 44799999999999999999874
No 45
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=24.05 E-value=16 Score=24.89 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=26.0
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRY 175 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~ 175 (288)
+...|.|.+++.+ .++++|.++.+.++++.|.+.
T Consensus 25 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 25 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp CCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred CeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 3445667776654 678999999999999888774
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.60 E-value=23 Score=25.67 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=28.0
Q ss_pred eeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhH
Q 023067 140 HVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYR 174 (288)
Q Consensus 140 ~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~ 174 (288)
.-++..|.|.+++.+ .++++|+++.+.++++.|.+
T Consensus 34 ~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 34 FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 345567778777655 67899999999999999987
No 47
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=29.21 E-value=17 Score=27.32 Aligned_cols=32 Identities=13% Similarity=0.055 Sum_probs=25.7
Q ss_pred EEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 146 ITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 146 ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 45 v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 45 INLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 666666554 67899999999999999988664
No 48
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.73 E-value=22 Score=26.08 Aligned_cols=35 Identities=3% Similarity=-0.019 Sum_probs=27.1
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRY 175 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~ 175 (288)
-++..|.|.+++.+ .+.++|+++.+.++++.|.+.
T Consensus 41 G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 41 GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34556777776654 567999999999999998876
No 49
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=21.84 E-value=12 Score=30.55 Aligned_cols=36 Identities=6% Similarity=0.060 Sum_probs=29.4
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
.++.|.|.+|..+ .+++||+++.+.+++..|.+.++
T Consensus 83 ~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln 120 (156)
T 3n9u_C 83 DVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred cEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 5677888877766 57799999999999999988864
No 50
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.80 E-value=13 Score=27.93 Aligned_cols=36 Identities=8% Similarity=0.133 Sum_probs=28.4
Q ss_pred eeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|.++....++++|+++.+.++++.|.+..+
T Consensus 55 ~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 55 KILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC
Confidence 444566766655578999999999999999988764
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.62 E-value=27 Score=25.50 Aligned_cols=36 Identities=6% Similarity=0.103 Sum_probs=28.6
Q ss_pred eeeEEEEeeCC-CCC--CCCCCccCCCCCCcchhhhHHH
Q 023067 141 VSMISITFSTR-ELN--KNSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 141 VsaI~ItLSkd-~ld--~k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
-++..|.|.++ ..+ .++++|+++.+.++++.|.+.+
T Consensus 40 G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 40 GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 34567777777 444 6789999999999999999887
No 52
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.59 E-value=21 Score=27.29 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=30.3
Q ss_pred eeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 139 RHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 139 R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
..-++..|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 86 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 86 PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 3445667888877665 67899999999999999887653
No 53
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.58 E-value=11 Score=28.31 Aligned_cols=31 Identities=3% Similarity=-0.047 Sum_probs=24.8
Q ss_pred EEEEeeCCCCC--CCCCCccCCCCCCcchhhhHH
Q 023067 144 ISITFSTRELN--KNSPGYQSPHNAEQPKLQYRY 175 (288)
Q Consensus 144 I~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~ 175 (288)
+.|+|.+|+ + .++++|++|.+.++++.|.+.
T Consensus 42 ~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 42 MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTT
T ss_pred eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 367777776 4 577999999999999999853
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=20.66 E-value=26 Score=26.15 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=29.6
Q ss_pred eeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHH
Q 023067 139 RHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 139 R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
+.-.+..|.|.+++.+ .++++|+++.+.++++.+.+.+
T Consensus 63 ~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 63 PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 3445667788777654 6789999999999999988865
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=20.35 E-value=17 Score=25.40 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=27.0
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
+...|.|.+++.+ .++++|+++.+.++++.|.+..+
T Consensus 33 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 33 DITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 4455666666544 57889999999999999887664
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.24 E-value=14 Score=27.03 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=28.6
Q ss_pred eeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 141 VSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 141 VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
-++..|.|.+++.+ .++++|+++.+.++++.|.+.++
T Consensus 40 G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 40 GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 35566777777654 56789999999999999988764
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=20.19 E-value=24 Score=25.42 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=28.1
Q ss_pred eeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 142 SMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 142 saI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
++..|.|..++.+ .++++|+++.+.+++..|.+..+
T Consensus 28 ~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 28 PVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4556777777654 57899999999999999988764
No 58
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=20.09 E-value=24 Score=25.64 Aligned_cols=34 Identities=3% Similarity=-0.006 Sum_probs=27.4
Q ss_pred eeEEEEeeCCCCCCCCCCccCCCCCCcchhhhHHHHH
Q 023067 142 SMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQ 178 (288)
Q Consensus 142 saI~ItLSkd~ld~k~pGYQ~P~~~dqvk~~~~~~~~ 178 (288)
++..|.|.++ .++++|+++.+.+++..|.+.++.
T Consensus 26 ~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 26 PLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp CCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCC
Confidence 4455666666 788999999999999999987754
Done!