BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023068
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/291 (85%), Positives = 264/291 (90%), Gaps = 11/291 (3%)
Query: 1 MSGLYNPN--FSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQ 58
MSGLYN + FSPARAASPQIRSTP+I+ SQYL+ELLAEHQKL PF QVLPICSRLL Q
Sbjct: 1 MSGLYNNSSYFSPARAASPQIRSTPEID-SSQYLTELLAEHQKLTPFMQVLPICSRLLNQ 59
Query: 59 EIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMT 118
E+FRVSGMM NQGFGDFDRLRHRSPSPMASSNLMSNV+ TGLGGWNGL QERL G PGMT
Sbjct: 60 EMFRVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGTPGMT 119
Query: 119 MDWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178
MDWQ AP SPSSYTVKRILRLEIPVD YPNFNFVGRLLGPRGNSLKRVEATTGCRV+IRG
Sbjct: 120 MDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRG 179
Query: 179 KGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKP 238
KGSIKDP+K EDKLRGRPGYEHLN+ LHILIEADLPA+IV+IRLRQAQEIIEELLKP
Sbjct: 180 KGSIKDPEK----EDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKP 235
Query: 239 VDESQDYIKRQQLRELAMLNS-NFREDSPGPS--GSVSPFNSSGMKRAKTG 286
VDESQD+IKRQQLRELA+LNS N RE+SPGPS GSVSPFNSSG KR KTG
Sbjct: 236 VDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 466 bits (1200), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/288 (83%), Positives = 264/288 (91%), Gaps = 6/288 (2%)
Query: 1 MSGLYN-PNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQE 59
MSGLYN NFSP+RAASPQIR TP ++DSQY+S+LLAEHQKLGPF QVLPICSRLL QE
Sbjct: 1 MSGLYNYNNFSPSRAASPQIR-TPSSDVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQE 59
Query: 60 IFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTM 119
IFR++GMMPNQGF DFDRLRHRSPSPMAS NLMSNV+G GLGGWNGLP ER+GGP GM M
Sbjct: 60 IFRITGMMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPHGMAM 119
Query: 120 DWQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179
+WQ APASPSSY VKRILRL++PVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK
Sbjct: 120 EWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179
Query: 180 GSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPV 239
GSIKDP+K E+KL+G+PGYEHLN+ LHILIEADLP +IVDI+LRQAQEIIEEL+KPV
Sbjct: 180 GSIKDPEK----EEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235
Query: 240 DESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 287
DESQDYIKRQQLRELA+LNSN RE+SPGPSGSVSPFNS+ MKR KTGR
Sbjct: 236 DESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/287 (75%), Positives = 245/287 (85%), Gaps = 6/287 (2%)
Query: 1 MSGLYNPNFSPARAASPQIRSTPDINIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEI 60
MSGLY+P FSPAR SPQIRS P ++DSQYL+ELLAEHQKLGPF QVLPICS+LL+QEI
Sbjct: 1 MSGLYSPGFSPARNLSPQIRSNP-TDVDSQYLAELLAEHQKLGPFMQVLPICSKLLSQEI 59
Query: 61 FRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGWNGLPQERLGGPPGMTMD 120
RVS ++ N GFGDFDR R RSPSPM+S N SN +G G WNGL QERLG P G +MD
Sbjct: 60 MRVSSIVHNHGFGDFDRHRFRSPSPMSSPNPRSNRSGNGFSPWNGLHQERLGFPQGTSMD 119
Query: 121 WQSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180
WQ AP SPSS+ VK+ILRL++PVD+YPNFNFVGR+LGPRGNSLKRVEA+TGCRV+IRGKG
Sbjct: 120 WQGAPPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKG 179
Query: 181 SIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVD 240
SIKDP K EDKLRG+PGYEHL+DPLHILIEA+ PA+I+D RLR AQE+IEELLKPVD
Sbjct: 180 SIKDPGK----EDKLRGKPGYEHLSDPLHILIEAEFPASIIDARLRHAQEVIEELLKPVD 235
Query: 241 ESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 287
ESQD+ KRQQLRELAMLNS REDSP P GSVSPF++ GMKRAKTG+
Sbjct: 236 ESQDFYKRQQLRELAMLNSTLREDSPHP-GSVSPFSNGGMKRAKTGQ 281
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 20/283 (7%)
Query: 6 NPNFSPARAASPQIRSTPDINIDSQ-YLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVS 64
+PNFS +RS P ++ + YLSELLAE KL PF VLP RL+ QEI RV+
Sbjct: 41 SPNFSGG------LRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEILRVT 94
Query: 65 GMMPNQGFGDFDRLRHRSPSPMASSNLMSNVAGTGLGGW-NGLPQER-LGGPPGMTMDWQ 122
++ N + R PSP+AS + N + + GW + P ER + P +W
Sbjct: 95 TLLENA----LSQSRFDHPSPLASGGIFQN-SRADMNGWASQFPSERSVSSSPAP--NWL 147
Query: 123 SAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 182
++P S S VKR +R++IPVD YPN+NFVGRLLGPRGNSLKRVEA+T CRV IRG+GSI
Sbjct: 148 NSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSI 207
Query: 183 KDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 242
KDP K ED +RG+PGYEHLN+PLHIL+EA+LP IVD RL QA+EI+++LL PV+E+
Sbjct: 208 KDPIK----EDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEET 263
Query: 243 QDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKT 285
D+ K+QQLRELA+LN + RE+ SGS+SP+NS GMKRAKT
Sbjct: 264 HDFYKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 275 bits (703), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 149/269 (55%), Positives = 186/269 (69%), Gaps = 10/269 (3%)
Query: 19 IRSTPDINIDSQ-YLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDR 77
+RS + ++ + YLSELLAE KL PF VLP RLL QEI RV+ ++ N
Sbjct: 52 LRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLNQEILRVTTLLENATVLSQSG 111
Query: 78 LRHRSPSPMASSNLMSNVAGTGLGGW-NGLPQERLGGPPGMTMDWQSAPASPSSYTVKRI 136
L H PSP+AS + N A + GW + P ER P +W ++P S S KR
Sbjct: 112 LDH--PSPLASGGIFQN-ARADMNGWASQFPSER-SVPSSPGPNWLNSPGSSSGLIAKRT 167
Query: 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR 196
+R++IPVD YPNFNFVGRLLGPRGNSLKRVEA+T CRV IRG+GSIKDP K E+ +R
Sbjct: 168 IRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIK----EEMMR 223
Query: 197 GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAM 256
G+PGYEHLN+PLHIL+EA+LP IVD RL QA+EI+++LL P++E+ D K+QQLRELA+
Sbjct: 224 GKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELAL 283
Query: 257 LNSNFREDSPGPSGSVSPFNSSGMKRAKT 285
LN RE+ SGSVSP+NS GMKRAKT
Sbjct: 284 LNGTLREEGSPMSGSVSPYNSLGMKRAKT 312
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 240 bits (613), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 173/271 (63%), Gaps = 33/271 (12%)
Query: 30 QYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASS 89
+YL+ELL E QKLGPF QV+P C RLL EI RVS F D DR H SP S
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS------FPDLDRYEHGSP--FRSL 95
Query: 90 NLMSNVAGTGLGGWNGLPQER---------LGGPPGMTMDWQSAPASPSSYTVKRILRLE 140
+N L GW+ + E GP + W P P+ VK+++RL+
Sbjct: 96 GQPTN-GKLDLEGWSMMQAEENCHLQRASPFRGP--SPVGWIGMPGLPNPPIVKKVIRLD 152
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPG 200
+PVD YP++NFVGR+LGPRGNSLKRVE T CRV+IRG+GS+KD K E+KL+G+PG
Sbjct: 153 VPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVK----EEKLKGKPG 208
Query: 201 YEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSN 260
YEHL +PLH+LIEA+LP +I++ RL A +E LLKP+DES D+ KR+QL+ELA LN
Sbjct: 209 YEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGT 268
Query: 261 FREDSPGP------SGSVSPFNSSGMKRAKT 285
RE+SP P S S+SPFNS KRAKT
Sbjct: 269 LREESPSPSLSPCLSPSMSPFNS---KRAKT 296
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 86 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 141
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 142 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201
Query: 258 NSNFRE 263
N +R+
Sbjct: 202 NGTYRD 207
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +I+L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLIPAAEGEDSLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 123/245 (50%), Gaps = 50/245 (20%)
Query: 29 SQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMAS 88
+ YL++LL + ++L F V RLL +EI RV
Sbjct: 76 ADYLAQLLKDRKQLAAFPNVFTHVERLLDEEIARVRA----------------------- 112
Query: 89 SNLMSNVAGTGLGGWNGLPQERLGGPPGMTMDWQSAPASPSSYTVKRILRLEIPVDTYPN 148
L NG+ +E L P P V ++ +PV +P+
Sbjct: 113 ----------SLFQINGVKKEPLTLP------------EPEGSVVTMNEKVYVPVREHPD 150
Query: 149 FNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPL 208
FNFVGR+LGPRG + K++E TGC++ +RGKGS++D K ED RG+P +EHL+D L
Sbjct: 151 FNFVGRILGPRGMTAKQLEQETGCKIMVRGKGSMRDKKK----EDANRGKPNWEHLSDDL 206
Query: 209 HILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGP 268
H+LI + N ++L QA +++LL P E +D +K++QL ELA++N +R D+
Sbjct: 207 HVLITVEDTENRATVKLAQAVAEVQKLLVPQAEGEDELKKRQLMELAIINGTYR-DTTAK 265
Query: 269 SGSVS 273
S +V
Sbjct: 266 SVAVC 270
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 92/126 (73%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP+FNFVGR+LGPRG + K++EA TGC++ +RGKGS++D K E++ RG
Sbjct: 86 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRG 141
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + N +++L++A E +++LL P E +D +K+ QL ELA+L
Sbjct: 142 KPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAIL 201
Query: 258 NSNFRE 263
N +R+
Sbjct: 202 NGTYRD 207
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
++ +P + YP++NFVGR+LGPRG + K++E TGC++ +RGKGS++D K E RG
Sbjct: 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSK----ESAHRG 263
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+ +EHL D LH+L++ + N V I+L+ A E +++LL P E D +KR+QL ELA++
Sbjct: 264 KANWEHLEDDLHVLVQCEDTENRVHIKLQAALEQVKKLLIPAPEGTDELKRKQLMELAII 323
Query: 258 NSNFRE-DSPGPS 269
N +R SP P+
Sbjct: 324 NGTYRPMKSPNPA 336
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 90/126 (71%), Gaps = 4/126 (3%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
+L +PV YP++NFVGR+LGPRG + K++EA TGC++ +RG+ S++D K E++ RG
Sbjct: 85 KLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKK----EEQNRG 140
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
+P +EHLN+ LH+LI + +I++R+A E +++LL P E +D +K+ QL ELA+L
Sbjct: 141 KPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLLVPAAEGEDNLKKMQLMELAIL 200
Query: 258 NSNFRE 263
N +R+
Sbjct: 201 NGTYRD 206
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 8/134 (5%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD---- 109
Query: 189 STPEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
T E++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I
Sbjct: 110 KTKEEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEI 167
Query: 247 KRQQLRELAMLNSN 260
+++QLREL+ LN +
Sbjct: 168 RQEQLRELSYLNGS 181
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1
Length = 349
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 10/139 (7%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D K
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAK- 112
Query: 189 STPEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
E++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I
Sbjct: 113 ---EEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEI 167
Query: 247 KRQQLRELAMLNSNFREDS 265
+++QLREL+ LN + EDS
Sbjct: 168 RQEQLRELSYLNGS--EDS 184
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/132 (46%), Positives = 84/132 (63%), Gaps = 8/132 (6%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++D K
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAK- 112
Query: 189 STPEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
E++LR G Y HL+D LH+LIE P R+ A E I++ L P + D I
Sbjct: 113 ---EEELRKSGEAKYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEI 167
Query: 247 KRQQLRELAMLN 258
+++QLREL+ LN
Sbjct: 168 RQEQLRELSYLN 179
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1
Length = 346
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 84/132 (63%), Gaps = 8/132 (6%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S+ +K R+ IPV YP FNFVG+LLGPRGNS+KR++ TG ++ I GKGS++D K
Sbjct: 54 SNKNIKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRDKGK- 112
Query: 189 STPEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
E++LR G Y HL++ LH+LIE P R+ A E I++ L P + D I
Sbjct: 113 ---EEELRKSGEAKYAHLSNDLHVLIEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEI 167
Query: 247 KRQQLRELAMLN 258
+++QLREL+ LN
Sbjct: 168 RQEQLRELSYLN 179
>sp|Q0VFL3|KHDR2_XENTR KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1
Length = 345
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 4/130 (3%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S+ +K R+ IPV YP FNFVG+LLGPRGNSLKR++ TG ++ I GKGS++ DK+
Sbjct: 54 SNKNIKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMR--DKI 111
Query: 189 STPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKR 248
E + + HL+D LH+L+E P R+ A E I++ L P + D I++
Sbjct: 112 KEEELRKSDEAKHAHLSDELHVLLEVFAPPGEAYSRMSHALEEIKKFLVP--DYNDEIRQ 169
Query: 249 QQLRELAMLN 258
+QLREL+ LN
Sbjct: 170 EQLRELSYLN 179
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 31/225 (13%)
Query: 47 QVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSN-LMSNVAGTGLGGWNG 105
Q+ + RL EI + + P + F + DR R SP P +N SN +
Sbjct: 91 QIAALILRLRVDEITKKITIGPIE-FTERDRERSPSPPPTYDNNGKRSNTREQRIK--EK 147
Query: 106 LPQERLGGPPGMTMDWQSAPAS--PSSY---TVKRILRLEIPVDTYPNFNFVGRLLGPRG 160
L +ER + Q P PS Y K+ ++ IP+ +P +NF+G ++GPRG
Sbjct: 148 LQKERHQL---VVTAQQINPTYKPPSDYQPPNEKKTRKIYIPIKNHPEYNFIGLIIGPRG 204
Query: 161 NSLKRVEATTGCRVYIRGKGSIKD--PDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPA 218
N+ KR+E +G ++ IRGKGS +D P K+ E ND LH+L+ AD
Sbjct: 205 NTQKRMEKESGAKIAIRGKGSSRDGKPTKLQFQE------------NDELHVLLTAD--- 249
Query: 219 NIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 263
VD +L +A+ ++ E L PV+E ++ KRQQLRELA +N RE
Sbjct: 250 -TVD-QLDKAEVLVREFLIPVEEGKNEHKRQQLRELAEMNGTLRE 292
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 8/120 (6%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR--GR 198
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D K E++LR G
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAK----EEELRKSGE 117
Query: 199 PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 258
Y HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 118 AKYFHLNDDLHVLIEVFAPPAEAYARMGHALEDIKKFLIP--DYNDEIRQAQLQELTYLN 175
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 8/120 (6%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR--GR 198
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D K E++LR G
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAK----EEELRKSGE 117
Query: 199 PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 258
Y HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 118 AKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1
Length = 346
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 8/120 (6%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR--GR 198
IPV +P FNFVG+LLGPRGNSLKR++ T ++ I GKGS++D K E++LR G
Sbjct: 62 IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAK----EEELRKSGE 117
Query: 199 PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLN 258
Y HLND LH+LIE P R+ A E I++ L P + D I++ QL+EL LN
Sbjct: 118 AKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIP--DYNDEIRQAQLQELTYLN 175
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%), Gaps = 10/126 (7%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPG 200
IP++ YP NFVG LLGPRGN+LK+++ +GC++ IRG+GS+K+ K +T K G
Sbjct: 155 IPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKE-GKAATDLPK-----G 208
Query: 201 YEHLNDPLHILIEADLPANI-VDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS 259
++N+PLH +I AD I + I ++ II+ + P E Q+ +KR QLRELA+LN
Sbjct: 209 AMNMNEPLHCVISADTEEKIPLGINAVESI-IIKAITSP--EGQNDLKRGQLRELAVLNG 265
Query: 260 NFREDS 265
RED+
Sbjct: 266 TLREDN 271
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 84/142 (59%), Gaps = 10/142 (7%)
Query: 128 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 185
PS+Y + + RL +PV YP+ NFVG L+GPRGN+LK+++ +G R+ IRGKGS+K+
Sbjct: 139 PSNYRRPSRTVERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRGKGSVKE- 197
Query: 186 DKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELL-KPVDESQD 244
D + D LH+LI AD P I ++ EII++L+ P + +
Sbjct: 198 ---GKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKA-VKLVNEIIDKLIFSP--QGMN 251
Query: 245 YIKRQQLRELAMLNSNFREDSP 266
++KR QL+ELA+LN RE P
Sbjct: 252 FMKRDQLKELAVLNGTLRETKP 273
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 25/238 (10%)
Query: 39 HQKL-----GPFTQVLPICSRLLTQEIFRVSGMMPNQGFGDFDRLRHRSPSPMASSNLMS 93
HQKL GP T + +C+ I +S ++ + F + R+RSPSP +
Sbjct: 33 HQKLPTKISGPLT-LEQLCAYQHMFRIQEISSIIKSHSF-EVPNARNRSPSPPP----VY 86
Query: 94 NVAGTGLGGWNGLPQERLGGPPGMTMDWQS----APASPSSYTVKRIL--RLEIPVDTYP 147
+ G + L +++L ++ S ++P Y + IPV YP
Sbjct: 87 DAEGKRINTREQLYKKKLMNERFKLVEVVSKLIPGYSAPKDYKRPTTFQEKYYIPVSQYP 146
Query: 148 NFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDP 207
NFVG LLGPRG +L++++ +GC++ IRG+GS+K+ S PG +DP
Sbjct: 147 QINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDLP------PGAMDFSDP 200
Query: 208 LHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDS 265
LH LI AD I + +I+ + P E Q+ +KR QLRELA LN RED+
Sbjct: 201 LHCLIIADNEEKIENGIKACRNIVIKAVTSP--EGQNELKRGQLRELAELNGTLREDN 256
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR- 196
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D K E++LR
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAK----EEELRK 214
Query: 197 -GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 255
G P Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 256 MLN 258
LN
Sbjct: 273 YLN 275
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR- 196
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D K E++LR
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAK----EEELRK 214
Query: 197 -GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 255
G P Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 256 MLN 258
LN
Sbjct: 273 YLN 275
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPG 200
IPVD YP+ NFVG LLGPRG +L++++ + C++ IRG+GS+K+ S PG
Sbjct: 154 IPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLP------PG 207
Query: 201 YEHLNDPLHILIEADLPANIVDIRLRQAQEI-IEELLKPVDESQDYIKRQQLRELAMLNS 259
+ DPLH LI AD + + ++ Q I I+ + P E Q+ +KR QLRELA LN
Sbjct: 208 AMNFEDPLHCLIIADS-EDKIQKGIKVCQNIVIKAVTSP--EGQNDLKRGQLRELAELNG 264
Query: 260 NFREDS 265
RED+
Sbjct: 265 TLREDN 270
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 85/145 (58%), Gaps = 23/145 (15%)
Query: 128 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 185
PS Y K ++ +PV+ YP NF+G L+GPRGN+LK++EA +G ++ IRGKGS+K+
Sbjct: 172 PSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKE- 230
Query: 186 DKVSTPEDKLRGRPGYEHLN---DPLHILIEADLPANIVDIRLRQAQEIIEELLK---PV 239
+GR H + + LH LI AD + ++ +A++++ +++ +
Sbjct: 231 ---------GKGRSDAAHASNQEEDLHCLIMAD-----TEEKVNKAKKLVHNVIETAASI 276
Query: 240 DESQDYIKRQQLRELAMLNSNFRED 264
E Q+ +KR QLRELA LN R+D
Sbjct: 277 PEGQNELKRNQLRELAALNGTLRDD 301
>sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1
Length = 433
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 78/132 (59%), Gaps = 8/132 (6%)
Query: 129 SSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKV 188
S +K R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D K
Sbjct: 133 SHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAK- 191
Query: 189 STPEDKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
E++LR G P Y HLN LH+ IE P + A E +++ L P + D I
Sbjct: 192 ---EEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDI 246
Query: 247 KRQQLRELAMLN 258
++Q EL+ LN
Sbjct: 247 CQEQFLELSYLN 258
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 8/123 (6%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLR- 196
R+ IPV YP FNFVG++LGP+GN++KR++ TG ++ + GKGS++D K E++LR
Sbjct: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAK----EEELRK 214
Query: 197 -GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 255
G P Y HLN LH+ IE P + A E +++ L P + D I ++Q EL+
Sbjct: 215 GGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DMMDDICQEQFLELS 272
Query: 256 MLN 258
LN
Sbjct: 273 YLN 275
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 84/145 (57%), Gaps = 23/145 (15%)
Query: 128 PSSYT--VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDP 185
PS Y K ++ +PV+ YP NF+G L+GPRGN+LK++E +G ++ IRGKGS+K+
Sbjct: 187 PSDYRRPTKTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEG 246
Query: 186 DKVSTPEDKLRGRPGYEHLN---DPLHILIEADLPANIVDIRLRQAQEIIEELLK---PV 239
+GR H + + LH LI AD + ++ +A+++I +++ +
Sbjct: 247 ----------KGRSDAAHSSNQEEDLHCLIMAD-----TEEKVNKAKKLIHNIIETAASI 291
Query: 240 DESQDYIKRQQLRELAMLNSNFRED 264
E Q+ +KR QLRELA LN R+D
Sbjct: 292 PEGQNELKRNQLRELAALNGTLRDD 316
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 85/143 (59%), Gaps = 17/143 (11%)
Query: 127 SPSSY--TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKD 184
+PS Y K ++ +PV YP NF+G L+GPRG++LK +EA +G ++ IRGKGS+K+
Sbjct: 176 APSDYRRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKE 235
Query: 185 PDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLK---PVDE 241
S P +RG ++ + LH L+ AD + ++ A ++I+ +++ V E
Sbjct: 236 GKGRSDP--SVRG-----NMEEDLHCLVTAD-----SEDKINHAIKLIDNVIQTAASVPE 283
Query: 242 SQDYIKRQQLRELAMLNSNFRED 264
Q+ +KR QLR+LA LN R+D
Sbjct: 284 GQNDLKRNQLRQLATLNGTLRDD 306
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ KV + ++
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQM-- 195
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLK---PVDESQDYIKRQQLREL 254
PG + +PLH L+ A+ N+ ++A E I +LK E Q+ +++ QLREL
Sbjct: 196 LPGED---EPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLREL 247
Query: 255 AMLNSNFRED 264
A LN RED
Sbjct: 248 ARLNGTLRED 257
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 77/130 (59%), Gaps = 14/130 (10%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
++ IP D YP NFVG L+GPRGN+LK +E ++ IRGKGS+K+ KV + ++
Sbjct: 139 KVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKE-GKVGRKDGQM-- 195
Query: 198 RPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLK---PVDESQDYIKRQQLREL 254
PG + +PLH L+ A+ N+ ++A E I +LK E Q+ +++ QLREL
Sbjct: 196 LPGED---EPLHALVTANTMENV-----KKAVEQIRNILKQGIETPEDQNDLRKMQLREL 247
Query: 255 AMLNSNFRED 264
A LN RED
Sbjct: 248 ARLNGTLRED 257
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 12/143 (8%)
Query: 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPE 192
VK ++ IPV YP+ NFVG LLGPRGN+L++++ +G R+ IRGKGS+KD S+
Sbjct: 160 VKTYEKIYIPVKDYPDINFVGLLLGPRGNTLRQLQEDSGARLAIRGKGSVKDGKSTSSNN 219
Query: 193 DKLRGRPGYEHL--------NDPLHILIEADLPANIVDIRLRQAQEIIEELL-KPVDESQ 243
D ND LH++I +D + I ++ ++IE+ + PV Q
Sbjct: 220 DDDDSNSSLSFSNPNLNSSGNDDLHVVITSDSQSKIAKA-IKLTNQVIEKAISSPV--GQ 276
Query: 244 DYIKRQQLRELAMLNSNFREDSP 266
+ +KR QLRELA+LN RE P
Sbjct: 277 NDLKRGQLRELAILNGTLRETKP 299
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 15/127 (11%)
Query: 141 IPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGR-- 198
IPV+ YP+ NF+G+LLG RG +LK++E +G ++ IRG+GS+K + +GR
Sbjct: 185 IPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVK----------QGKGRTD 234
Query: 199 -PGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAML 257
P D LH LI ++ I ++ Q++I+ V E Q+ +KR QLRELA L
Sbjct: 235 IPFQSTAEDDLHCLIISEDEEKIARA-VQLVQQVIDTAAS-VPEGQNELKRSQLRELAAL 292
Query: 258 NSNFRED 264
N R+D
Sbjct: 293 NGTLRDD 299
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
++ IPV +P NF G L+GPRGNSLK++E +G ++ IRGKGS+K+ +G
Sbjct: 249 KVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKE----------GKG 298
Query: 198 RPGY--EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 255
R G + D LH LI AD + + + ++IE + D+ KR QLRELA
Sbjct: 299 RAGNFPQDEEDELHCLITADDESKVKTC-VALINKVIETAASTPEGENDH-KRNQLRELA 356
Query: 256 MLNSNFRED 264
LN R+D
Sbjct: 357 SLNGTLRDD 365
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 14/129 (10%)
Query: 138 RLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRG 197
++ IPV +P NF G L+GPRGNSLK++E +G ++ IRGKGS+K+ +G
Sbjct: 249 KVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKE----------GKG 298
Query: 198 RPGY--EHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELA 255
R G + D LH LI AD + + + ++IE + D+ KR QLRELA
Sbjct: 299 RAGNFPQDEEDELHCLITADDESKVKTC-VALINKVIETAASTPEGENDH-KRNQLRELA 356
Query: 256 MLNSNFRED 264
LN R+D
Sbjct: 357 SLNGTLRDD 365
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 128 PSSY-TVKRILR----LEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 182
PS Y +KR R + +P+ +P F G L+GPRGN+LK +E +G ++ IRGKGS+
Sbjct: 236 PSDYHAIKRNQRPTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSV 295
Query: 183 KDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDES 242
K +G+ + + +H ++ AD A++ ++ ++IE +
Sbjct: 296 K----------TGKGKMDADEDEEEMHCVVTADDEASVKKC-IKLINQVIETAASTPEGE 344
Query: 243 QDYIKRQQLRELAMLNSNFRED 264
D+ KR QLRELA LN R+D
Sbjct: 345 NDH-KRNQLRELAALNGTLRDD 365
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1
Length = 308
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Query: 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPE 192
VK + R +PVD +P +NF+G+LLGP G+++K+++ T ++ I G+GS++D +K E
Sbjct: 72 VKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRDRNK----E 127
Query: 193 DKLR--GRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYI 246
++LR G Y HLN+ LHI I + R+ A I++ + P +E +Y+
Sbjct: 128 EELRNSGDVKYAHLNEQLHIEIISIASPAEAHARMAYALTEIKKYITP-EEDPNYM 182
>sp|B5Y8I4|PNP_COPPD Polyribonucleotide nucleotidyltransferase OS=Coprothermobacter
proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=pnp
PE=3 SV=1
Length = 697
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 128 PSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180
P S T RI+++EIPVD +G ++GP G ++KR+ TG + IR G
Sbjct: 547 PLSETAPRIVKIEIPVDK------IGEVIGPGGRNVKRITQETGATIDIREDG 593
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,339,527
Number of Sequences: 539616
Number of extensions: 5491358
Number of successful extensions: 13065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 12872
Number of HSP's gapped (non-prelim): 195
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)