Query 023068
Match_columns 287
No_of_seqs 203 out of 430
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 3.7E-50 1.3E-54 340.6 5.9 130 135-268 2-131 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 3.5E-42 1.2E-46 288.4 8.8 124 132-266 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 2.2E-29 7.6E-34 208.0 8.8 102 132-250 9-111 (119)
4 3k6t_A Female germline-specifi 99.1 1.5E-11 5.1E-16 90.1 2.0 45 28-72 6-50 (60)
5 4dnn_A Protein quaking, MQKI, 99.1 1.8E-11 6.1E-16 88.1 0.1 42 29-70 4-48 (56)
6 2xa6_A KH domain-containing\,R 99.0 4.7E-10 1.6E-14 76.0 4.2 38 25-65 3-40 (41)
7 2opv_A KHSRP protein; KH domai 98.9 2E-09 6.8E-14 82.5 7.7 71 135-237 14-84 (85)
8 1dtj_A RNA-binding neurooncolo 98.9 3.8E-09 1.3E-13 78.8 7.5 73 134-237 2-74 (76)
9 1x4m_A FAR upstream element bi 98.8 1.6E-08 5.4E-13 79.0 7.1 74 134-239 14-87 (94)
10 2hh2_A KH-type splicing regula 98.7 3.1E-08 1.1E-12 79.3 6.8 72 136-238 8-79 (107)
11 1ec6_A RNA-binding protein NOV 98.7 1.6E-08 5.4E-13 77.7 4.4 73 134-237 2-74 (87)
12 1zzk_A Heterogeneous nuclear r 98.7 3.8E-08 1.3E-12 74.8 6.4 69 135-237 7-75 (82)
13 1x4n_A FAR upstream element bi 98.7 2.9E-08 1E-12 77.2 5.7 69 135-237 15-83 (92)
14 1we8_A Tudor and KH domain con 98.6 4.4E-08 1.5E-12 77.8 6.4 74 132-237 12-85 (104)
15 2p2r_A Poly(RC)-binding protei 98.6 2.4E-08 8.2E-13 74.7 4.3 70 134-237 4-73 (76)
16 2dgr_A Ring finger and KH doma 98.6 5E-08 1.7E-12 75.2 6.2 66 135-237 10-75 (83)
17 1vig_A Vigilin; RNA-binding pr 98.6 8.5E-08 2.9E-12 71.3 6.7 65 136-236 6-70 (71)
18 1wvn_A Poly(RC)-binding protei 98.6 5.4E-08 1.8E-12 73.9 5.3 69 135-237 6-74 (82)
19 2ctk_A Vigilin; K homology typ 98.6 5.1E-08 1.8E-12 77.9 5.3 70 132-237 14-83 (104)
20 2axy_A Poly(RC)-binding protei 98.6 4.3E-08 1.5E-12 73.2 4.3 68 134-237 4-71 (73)
21 2cte_A Vigilin; K homology typ 98.6 6.8E-08 2.3E-12 75.5 5.5 67 135-237 17-83 (94)
22 2hh3_A KH-type splicing regula 98.6 5.3E-08 1.8E-12 78.2 4.9 68 136-237 12-79 (106)
23 2ctl_A Vigilin; K homology typ 98.5 1.5E-07 5.3E-12 74.1 6.5 69 136-237 18-86 (97)
24 1j5k_A Heterogeneous nuclear r 98.5 7.7E-08 2.6E-12 74.3 4.4 70 134-237 13-82 (89)
25 2ctm_A Vigilin; K homology typ 98.4 2.6E-07 9E-12 72.6 5.5 67 136-237 18-84 (95)
26 3krm_A Insulin-like growth fac 98.3 7.9E-07 2.7E-11 74.4 5.5 72 134-237 84-155 (163)
27 1j4w_A FUSE binding protein; s 98.2 1.8E-06 6E-11 73.2 6.6 71 135-236 104-174 (174)
28 2jvz_A KH type-splicing, FAR u 98.2 4.1E-06 1.4E-10 69.7 7.7 72 136-239 3-74 (164)
29 2jzx_A Poly(RC)-binding protei 98.1 1.2E-06 4E-11 73.1 3.4 70 135-237 89-158 (160)
30 2jvz_A KH type-splicing, FAR u 98.1 2.2E-06 7.4E-11 71.4 3.9 67 137-237 93-159 (164)
31 2ctj_A Vigilin; K homology typ 98.1 2.4E-06 8.2E-11 67.3 3.7 65 137-237 19-84 (95)
32 2jzx_A Poly(RC)-binding protei 98.0 4E-06 1.4E-10 69.9 4.6 68 133-236 3-70 (160)
33 1j4w_A FUSE binding protein; s 98.0 4.8E-06 1.6E-10 70.5 4.1 68 136-237 4-71 (174)
34 3krm_A Insulin-like growth fac 97.9 9.4E-06 3.2E-10 67.8 5.5 38 136-179 4-41 (163)
35 2anr_A Neuro-oncological ventr 97.9 9E-06 3.1E-10 68.9 5.2 74 135-239 6-79 (178)
36 2cpq_A FragIle X mental retard 97.9 8.7E-06 3E-10 64.1 4.3 65 135-237 15-80 (91)
37 2anr_A Neuro-oncological ventr 97.9 5.1E-06 1.7E-10 70.5 3.0 72 135-238 104-175 (178)
38 1tua_A Hypothetical protein AP 97.8 2.4E-05 8.1E-10 69.0 5.4 53 151-238 108-160 (191)
39 3u1k_A Polyribonucleotide nucl 97.8 1.9E-05 6.3E-10 80.6 5.1 67 131-236 563-629 (630)
40 2e3u_A PH-DIM2P, hypothetical 97.6 4.1E-05 1.4E-09 68.7 4.6 53 151-238 139-191 (219)
41 2e3u_A PH-DIM2P, hypothetical 97.1 0.00033 1.1E-08 62.8 4.6 67 133-237 32-102 (219)
42 2qnd_A FMR1 protein; KH domain 96.8 0.0014 4.8E-08 54.6 5.1 71 137-237 69-141 (144)
43 4aid_A Polyribonucleotide nucl 96.7 0.00035 1.2E-08 72.3 1.2 69 132-239 567-635 (726)
44 2ctf_A Vigilin; K homology typ 96.2 0.011 3.9E-07 46.6 6.6 64 135-237 27-91 (102)
45 3n89_A Defective in GERM LINE 95.6 0.016 5.6E-07 55.8 6.4 73 134-235 29-103 (376)
46 3cdi_A Polynucleotide phosphor 94.2 0.0085 2.9E-07 62.0 0.0 45 133-183 558-602 (723)
47 2qnd_A FMR1 protein; KH domain 93.6 0.026 9E-07 46.8 2.0 30 136-171 5-34 (144)
48 1e3p_A Guanosine pentaphosphat 92.1 0.0069 2.4E-07 63.0 -4.5 41 134-180 597-637 (757)
49 3v69_A Protein filia; RNA-bind 90.6 0.083 2.8E-06 44.5 1.4 29 149-177 64-92 (140)
50 1tua_A Hypothetical protein AP 90.2 0.11 3.7E-06 45.6 1.9 37 136-178 5-41 (191)
51 3n89_A Defective in GERM LINE 86.4 0.54 1.8E-05 45.2 4.2 63 150-236 195-259 (376)
52 4fxw_B Splicing factor 1; UHM, 84.5 0.06 2E-06 44.5 -3.0 49 76-126 68-118 (124)
53 2z0s_A Probable exosome comple 76.3 12 0.0004 33.1 8.8 69 150-249 157-225 (235)
54 2cxc_A NUSA; transcription ter 70.3 1.6 5.6E-05 36.5 1.6 29 150-178 45-73 (144)
55 2ba0_A Archeal exosome RNA bin 46.8 38 0.0013 29.8 6.4 73 150-255 145-217 (229)
56 2asb_A Transcription elongatio 43.5 8.8 0.0003 34.9 1.7 34 145-178 121-155 (251)
57 2je6_I RRP4, exosome complex R 43.2 3.5 0.00012 37.1 -1.0 68 150-248 164-231 (251)
58 1k0r_A NUSA; two component arr 40.8 10 0.00036 36.2 1.8 34 145-178 244-278 (366)
59 3k5i_A Phosphoribosyl-aminoimi 40.0 34 0.0012 31.8 5.2 50 164-233 350-399 (403)
60 2pt7_G HP1451, hypothetical pr 35.0 11 0.00036 31.8 0.7 20 152-171 44-63 (152)
61 3iev_A GTP-binding protein ERA 31.7 24 0.00082 31.5 2.6 41 132-177 237-285 (308)
62 1hh2_P NUSA, N utilization sub 26.9 28 0.00096 32.9 2.2 34 145-178 240-274 (344)
63 3isp_A HTH-type transcriptiona 26.2 28 0.00096 29.4 1.9 19 162-180 40-58 (303)
64 1wjw_A Phosphoacetylglucosamin 24.8 2.2E+02 0.0076 21.9 6.8 52 161-236 45-97 (112)
65 2cxc_A NUSA; transcription ter 24.4 16 0.00056 30.3 0.1 37 135-177 103-139 (144)
66 3eth_A Phosphoribosylaminoimid 24.0 37 0.0013 31.4 2.5 36 163-218 291-326 (355)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=3.7e-50 Score=340.63 Aligned_cols=130 Identities=45% Similarity=0.845 Sum_probs=125.3
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.++|||||+++||+|||||+||||||+|+|+||++|||||.||||||+||+++ |+.++|+|+|+|++|||||+|+|
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~----e~~~~g~~~~~~~~epLHV~Isa 77 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKK----EEQNRGKPNWEHLNEDLHVLITV 77 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHH----HHTSTTSHHHHTTTSCCEEEEEE
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccc----cccccCCCCccccCCCcEEEEEe
Confidence 47899999999999999999999999999999999999999999999999888 88899999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHcCccCCCCCCC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGP 268 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~D~lK~~QL~ELA~lNGt~r~~~~~~ 268 (287)
++++++|+++|++|+++|++||.|++|++|++|++||+|||+||||||++....
T Consensus 78 ~~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 78 EDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred cCchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 999999999999999999999999999999999999999999999999987543
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=3.5e-42 Score=288.40 Aligned_cols=124 Identities=39% Similarity=0.656 Sum_probs=108.6
Q ss_pred ceeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEE
Q 023068 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHIL 211 (287)
Q Consensus 132 ~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVl 211 (287)
..|.++||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++.++ + . .+...|+|++|||||+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~----~-~-~~~~~~~~~~e~lhV~ 77 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKV----G-R-KDGQMLPGEDEPLHAL 77 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSS----S-S-CCCCCSCCSSCCEEEE
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccc----c-c-cccccccccCCCeEEE
Confidence 46789999999999999999999999999999999999999999999999999765 2 1 2234578999999999
Q ss_pred EEecCchhHHHHHHHHHHHHHHHccCC---CCcchHHHHHHHHHHHHHHcCccCCCCC
Q 023068 212 IEADLPANIVDIRLRQAQEIIEELLKP---VDESQDYIKRQQLRELAMLNSNFREDSP 266 (287)
Q Consensus 212 Isa~~~~~~~~~rl~~A~e~Ie~LL~p---~~e~~D~lK~~QL~ELA~lNGt~r~~~~ 266 (287)
|+|++++ ++++|+++|+.||.+ +++++|++|++||+|||+||||||++++
T Consensus 78 I~a~~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 78 VTANTME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp EEESSHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred EEECCHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 9998865 789999999999975 7899999999999999999999999865
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=207.99 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=90.3
Q ss_pred ceeeEEEEecCCC-CCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceE
Q 023068 132 TVKRILRLEIPVD-TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHI 210 (287)
Q Consensus 132 ~vkk~~kv~IPv~-~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHV 210 (287)
+...++|||||++ +||+|||||+||||+|+|+|+||++|||||.|||+||++.... .-++++|||||
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~------------~~~e~~e~l~V 76 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPA------------SGREAFEPMYI 76 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTT------------TSSCCSSBCEE
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccc------------cccccCCCcEE
Confidence 5568899999999 6999999999999999999999999999999999999974221 11358999999
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHccCCCCcchHHHHHHH
Q 023068 211 LIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 250 (287)
Q Consensus 211 lIsa~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~D~lK~~Q 250 (287)
+|++.+++ .+++|+++|+.||.++.+..+.+|++|
T Consensus 77 ~I~a~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 77 YISHPKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp EEEESSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 99999876 789999999999999988888888876
No 4
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.12 E-value=1.5e-11 Score=90.09 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhcCCCccchhHHHHhhhhhhhhhhccCCCCCC
Q 023068 28 DSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGF 72 (287)
Q Consensus 28 ~~~YL~eLl~Ek~~L~~~~~~~~~~~rLl~~EI~RV~~~~~~~~~ 72 (287)
..+||++||+||.+|..|+++|.|+.|||++||+||+..|+|..+
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~ 50 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEF 50 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 479999999999999999999999999999999999998877644
No 5
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.05 E-value=1.8e-11 Score=88.12 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCCcc---chhHHHHhhhhhhhhhhccCCCC
Q 023068 29 SQYLSELLAEHQKLGPFTQ---VLPICSRLLTQEIFRVSGMMPNQ 70 (287)
Q Consensus 29 ~~YL~eLl~Ek~~L~~~~~---~~~~~~rLl~~EI~RV~~~~~~~ 70 (287)
.+||++||+||.+|..||+ +|.|++||||+||.||+..|+|.
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq~ 48 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYND 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999998 99999999999999999987653
No 6
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=98.96 E-value=4.7e-10 Score=76.00 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=33.2
Q ss_pred cchHHHHHHHHHHHHhhcCCCccchhHHHHhhhhhhhhhhc
Q 023068 25 INIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSG 65 (287)
Q Consensus 25 ~~~~~~YL~eLl~Ek~~L~~~~~~~~~~~rLl~~EI~RV~~ 65 (287)
++..++||.||++||.+|+|.+ .||.|||++||.|+++
T Consensus 3 m~~~~kyLpeL~aEk~sLdPsf---~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 3 MEPENKYLPELMAEKDSLDPSF---THAMQLLTAEIEKIQK 40 (41)
T ss_dssp --CHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccCchH---HHHHHHHHHHHHHHHc
Confidence 3457999999999999999954 9999999999999975
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.94 E-value=2e-09 Score=82.54 Aligned_cols=71 Identities=23% Similarity=0.418 Sum_probs=56.8
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...|+.. .+.+-+|.|++
T Consensus 14 ~~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------------~~~er~v~I~G 67 (85)
T 2opv_A 14 TVQEIMIP------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN--------------------TNVDKPLRIIG 67 (85)
T ss_dssp EEEEEEEC------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS--------------------TTSCEEEEEEE
T ss_pred EEEEEEeC------hhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC--------------------CCCceEEEEEe
Confidence 45678898 36899999999999999999999999998765411 12234799999
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+++ .+++|+++|+.++.
T Consensus 68 -~~~-----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 68 -DPY-----KVQQACEMVMDILR 84 (85)
T ss_dssp -CHH-----HHHHHHHHHHHHHT
T ss_pred -CHH-----HHHHHHHHHHHHhc
Confidence 665 67899999999874
No 8
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.89 E-value=3.8e-09 Score=78.76 Aligned_cols=73 Identities=29% Similarity=0.484 Sum_probs=56.5
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
+.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...+...++ ..+-.|.|+
T Consensus 2 ~~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~-------------------~~~~~v~I~ 56 (76)
T 1dtj_A 2 KELVEMAVP------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-------------------TRNRRVTIT 56 (76)
T ss_dssp CEEEEEEEE------TTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTT-------------------CCEEEEEEE
T ss_pred ceEEEEEEC------hHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCC-------------------CceeEEEEE
Confidence 446678898 4789999999999999999999999999864321111 123478898
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+++|.++|+.++.
T Consensus 57 G~-~~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 57 GS-PA-----ATQAAQYLISQRVT 74 (76)
T ss_dssp ES-HH-----HHHHHHHHHHHHCC
T ss_pred eC-HH-----HHHHHHHHHHHHHh
Confidence 85 43 67899999999875
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.75 E-value=1.6e-08 Score=79.03 Aligned_cols=74 Identities=20% Similarity=0.410 Sum_probs=58.3
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..|... ...+-.|.|+
T Consensus 14 ~~~~~i~Ip------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------------~~~~r~v~I~ 67 (94)
T 1x4m_A 14 NAVQEIMIP------ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------------------TGADKPLRIT 67 (94)
T ss_dssp CEEEEEEEC------HHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------------------SCSCEEEEEE
T ss_pred cEEEEEEEC------hhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------------------CCCceEEEEE
Confidence 346678899 47999999999999999999999999997654211 0123579999
Q ss_pred ecCchhHHHHHHHHHHHHHHHccCCC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLKPV 239 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~p~ 239 (287)
+ +++ .+++|+++|+.++...
T Consensus 68 G-~~~-----~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 68 G-DPY-----KVQQAKEMVLELIRDQ 87 (94)
T ss_dssp E-CTT-----THHHHHHHHHHHHCCC
T ss_pred e-CHH-----HHHHHHHHHHHHHhcc
Confidence 9 555 5789999999998743
No 10
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.68 E-value=3.1e-08 Score=79.28 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=55.0
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
+.+|.|| -++||+|||++|.|+|+|+++|||+|.|.....- .. ...+=.|.|++
T Consensus 8 ~~~i~IP------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~---~~----------------~~~~r~V~I~G- 61 (107)
T 2hh2_A 8 EMTFSIP------THKCGLVIGRGGENVKAINQQTGAFVEISRQLPP---NG----------------DPNFKLFIIRG- 61 (107)
T ss_dssp CEEEEEE------GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT---TC----------------CTTEEEEEEES-
T ss_pred eEEEEEC------HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC---CC----------------CCCceEEEEEC-
Confidence 4568888 4789999999999999999999999999764210 00 01223788888
Q ss_pred CchhHHHHHHHHHHHHHHHccCC
Q 023068 216 LPANIVDIRLRQAQEIIEELLKP 238 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~p 238 (287)
+++ .+++|+++|++++.-
T Consensus 62 ~~e-----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 62 SPQ-----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp CHH-----HHHHHHHHHHHHSCS
T ss_pred CHH-----HHHHHHHHHHHHHhc
Confidence 554 688999999999873
No 11
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.66 E-value=1.6e-08 Score=77.68 Aligned_cols=73 Identities=29% Similarity=0.484 Sum_probs=55.8
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
|.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-..+....+ ..+=.|.|+
T Consensus 2 k~t~~i~IP------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g-------------------~~~r~v~I~ 56 (87)
T 1ec6_A 2 KELVEIAVP------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-------------------TRNRRVTIT 56 (87)
T ss_dssp CSEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT-------------------SCEEEEEEE
T ss_pred ceEEEEEEC------hHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC-------------------CCceEEEEE
Confidence 345678888 5799999999999999999999999999864311111 122378888
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+.+|.++|+.++.
T Consensus 57 G~-~~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 57 GS-PA-----ATQAAQYLISQRVT 74 (87)
T ss_dssp SS-HH-----HHHHHHHHHHHHHH
T ss_pred cC-HH-----HHHHHHHHHHHHHh
Confidence 85 43 67899999999986
No 12
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.65 E-value=3.8e-08 Score=74.83 Aligned_cols=69 Identities=19% Similarity=0.378 Sum_probs=53.4
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...- .. ..+=.|.|++
T Consensus 7 ~~~~i~Vp------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~~-------------------~~~~~v~I~G 58 (82)
T 1zzk_A 7 ITTQVTIP------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL---EG-------------------SEDRIITITG 58 (82)
T ss_dssp EEEEEEEE------TTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT---SC-------------------SSEEEEEEEE
T ss_pred EEEEEEEC------hHhcCeeECCCchHHHHHHHHHCCEEEEcCCC---CC-------------------CCceEEEEEe
Confidence 45678899 46899999999999999999999999996420 00 1123788998
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+++ .+++|.++|+.++.
T Consensus 59 -~~~-----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 59 -TQD-----QIQNAQYLLQNSVK 75 (82)
T ss_dssp -CHH-----HHHHHHHHHHHHHH
T ss_pred -CHH-----HHHHHHHHHHHHHH
Confidence 444 67899999998874
No 13
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.65 E-value=2.9e-08 Score=77.24 Aligned_cols=69 Identities=16% Similarity=0.465 Sum_probs=54.6
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|..... . ..+-.|.|++
T Consensus 15 ~~~~i~Ip------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~---g-------------------~~~r~v~I~G 66 (92)
T 1x4n_A 15 MTEEYKVP------DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG---G-------------------LPERSCMLTG 66 (92)
T ss_dssp EEEEEEEE------HHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT---T-------------------CSEEEEEEEE
T ss_pred EEEEEEEC------hHHcceeECCCchHHHHHHHHhCCEEEEcCCCC---C-------------------CCccEEEEEe
Confidence 45678898 579999999999999999999999999986421 0 1123788988
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
. ++ .+++|+++|+.++.
T Consensus 67 ~-~e-----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 67 T-PE-----SVQSAKRLLDQIVE 83 (92)
T ss_dssp C-HH-----HHHHHHHHHHHHHH
T ss_pred C-HH-----HHHHHHHHHHHHHH
Confidence 5 44 67889999999875
No 14
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.63 E-value=4.4e-08 Score=77.83 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=57.3
Q ss_pred ceeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEE
Q 023068 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHIL 211 (287)
Q Consensus 132 ~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVl 211 (287)
...++.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-...... ..++=.|.
T Consensus 12 ~ap~~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------------~~~~~~V~ 65 (104)
T 1we8_A 12 NTPVFEQLSVP------QRSVGRIIGRGGETIRSICKASGAKITCDKESEGT--------------------LLLSRLIK 65 (104)
T ss_dssp SCEEEEEEEEE------TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------------------SSSEEEEE
T ss_pred CCCEEEEEEEC------hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------------------CCCcceEE
Confidence 34466788999 57899999999999999999999999997542110 11234789
Q ss_pred EEecCchhHHHHHHHHHHHHHHHccC
Q 023068 212 IEADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 212 Isa~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
|++... .+++|+++|+.++.
T Consensus 66 I~G~~~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 66 ISGTQK------EVAAAKHLILEKVS 85 (104)
T ss_dssp EEEEHH------HHHHHHHHHHHHHH
T ss_pred EEcCHH------HHHHHHHHHHHHHh
Confidence 988542 47899999999986
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.62 E-value=2.4e-08 Score=74.73 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=55.3
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
..+.++.|| -+++|.|||++|.++|+|+++|||+|.|... .+. ..+=.|.|+
T Consensus 4 ~~~~~i~Ip------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~-------------------~~~~~v~I~ 55 (76)
T 2p2r_A 4 TTSHELTIP------NDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEG-------------------STDRQVTIT 55 (76)
T ss_dssp CEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTT-------------------CSEEEEEEE
T ss_pred ceEEEEEEC------hHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCC-------------------CCeEEEEEE
Confidence 345678898 4799999999999999999999999999752 110 122378998
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+++|.++|+.++.
T Consensus 56 G~-~~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 56 GS-AA-----SISLAQYLINVRLS 73 (76)
T ss_dssp EC-HH-----HHHHHHHHHHHHHT
T ss_pred eC-HH-----HHHHHHHHHHHHHH
Confidence 85 44 67899999999886
No 16
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=5e-08 Score=75.21 Aligned_cols=66 Identities=23% Similarity=0.534 Sum_probs=51.4
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+..|.|| .+++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++
T Consensus 10 ~~~~i~VP------~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------------------------~~~-~v~ItG 58 (83)
T 2dgr_A 10 TTIQVRVP------YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------------------------KEP-VFAVTG 58 (83)
T ss_dssp EEEEEECC------HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------------------------SCC-EEEEEE
T ss_pred eEEEEEeC------hHHeeeeECCCchHHHHHHHHhCCeEEecCCC------------------------CCC-eEEEEc
Confidence 45668888 59999999999999999999999999995321 111 477877
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
.. + .+++|.++|+.++.
T Consensus 59 ~~-e-----~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 59 MP-E-----NVDRAREEIEAHIT 75 (83)
T ss_dssp CT-T-----THHHHHHHHHHHHH
T ss_pred CH-H-----HHHHHHHHHHHHHh
Confidence 54 4 47789999988653
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.60 E-value=8.5e-08 Score=71.33 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=51.9
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
...+.|| ..++|+||||+|.++|+|+++|||+|.|--.|+ . + =.|.|++.
T Consensus 6 ~~~i~I~------~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~-----~----~---------------~~V~I~G~ 55 (71)
T 1vig_A 6 YVEINID------HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE-----K----S---------------NLIRIEGD 55 (71)
T ss_dssp EEEEEEC------SSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS-----S----S---------------EEEEEEES
T ss_pred EEEEEEC------HHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC-----c----c---------------cEEEEEcC
Confidence 3457788 578999999999999999999999999965442 0 0 16889886
Q ss_pred CchhHHHHHHHHHHHHHHHcc
Q 023068 216 LPANIVDIRLRQAQEIIEELL 236 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL 236 (287)
.+ .+++|.++|+.++
T Consensus 56 -~~-----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 56 -PQ-----GVQQAKRELLELA 70 (71)
T ss_dssp -SH-----HHHHHHHHHHHTC
T ss_pred -HH-----HHHHHHHHHHHHh
Confidence 44 5789999999875
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.58 E-value=5.4e-08 Score=73.92 Aligned_cols=69 Identities=22% Similarity=0.396 Sum_probs=54.7
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.++.|| -+++|.|||++|.++|+|+++|||+|.|.... +. ..+=.|.|++
T Consensus 6 ~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~~-------------------~~~r~v~I~G 57 (82)
T 1wvn_A 6 TTHELTIP------NNLIGCIIGRQGANINEIRQMSGAQIKIANPV---EG-------------------SSGRQVTITG 57 (82)
T ss_dssp EEEEEEEE------GGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---TT-------------------CSEEEEEEEE
T ss_pred EEEEEEEc------hHhccceeCCCchhHHHHHHHhCCEEEEecCC---CC-------------------CCceEEEEEc
Confidence 45678888 57999999999999999999999999997531 10 1223788988
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
.. + .+++|.++|+.++.
T Consensus 58 ~~-~-----~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 58 SA-A-----SISLAQYLINARLS 74 (82)
T ss_dssp CH-H-----HHHHHHHHHHHHTC
T ss_pred CH-H-----HHHHHHHHHHHHHH
Confidence 53 3 68899999999987
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.57 E-value=5.1e-08 Score=77.87 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=56.3
Q ss_pred ceeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEE
Q 023068 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHIL 211 (287)
Q Consensus 132 ~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVl 211 (287)
++.++..+.|| ..++|+||||+|.|+|+|+++|||+|.|--.|+. +=.|.
T Consensus 14 ~ap~~~~i~Ip------~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~------------------------~~~V~ 63 (104)
T 2ctk_A 14 LVPVTIEVEVP------FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ------------------------SDIIA 63 (104)
T ss_dssp SSCEEEEEECC------HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT------------------------CCEEE
T ss_pred hCCEEEEEEEC------hHHccceeCCCchHHHHHHHHHCCEEEecCCCCC------------------------cceEE
Confidence 34467788999 6889999999999999999999999999654320 01799
Q ss_pred EEecCchhHHHHHHHHHHHHHHHccC
Q 023068 212 IEADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 212 Isa~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
|++.. + .+++|++.|+.++.
T Consensus 64 I~G~~-e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 64 ITGLA-A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp EEECH-H-----HHHHHHHHHHHHHH
T ss_pred EEcCH-H-----HHHHHHHHHHHHHh
Confidence 99863 3 57899999999875
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.57 E-value=4.3e-08 Score=73.21 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=54.5
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
....++.|| -+.+|.|||++|.++|+|+++|||+|.|-..|+. | =.|.|+
T Consensus 4 ~~~~~i~ip------~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~---------e---------------r~v~I~ 53 (73)
T 2axy_A 4 TLTIRLLMH------GKEVGSIIGKKGESVKKMREESGARINISEGNCP---------E---------------RIITLA 53 (73)
T ss_dssp CEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCS---------E---------------EEEEEE
T ss_pred eEEEEEEEC------hhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCC---------c---------------EEEEEE
Confidence 345678888 5889999999999999999999999999764310 1 268888
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+.+|+++|..+|.
T Consensus 54 G~-~~-----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 54 GP-TN-----AIFKAFAMIIDKLE 71 (73)
T ss_dssp EC-HH-----HHHHHHHHHHHHHH
T ss_pred eC-HH-----HHHHHHHHHHHHHh
Confidence 86 54 57889999998875
No 21
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=6.8e-08 Score=75.50 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=52.8
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
....|.|| ..++|.||||+|.|+|+|+++|||+|.|-..++ +.=.|.|++
T Consensus 17 ~t~~i~Ip------~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~------------------------~~~~V~I~G 66 (94)
T 2cte_A 17 ASATVAIP------KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD------------------------PSNQIKITG 66 (94)
T ss_dssp EEEEEECC------TTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS------------------------SCCEEEEEE
T ss_pred eEEEEEEC------hHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC------------------------CCCeEEEEE
Confidence 35678898 468899999999999999999999999964211 112799998
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
. ++ .+++|.++|+.++.
T Consensus 67 ~-~e-----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 67 T-KE-----GIEKARHEVLLISA 83 (94)
T ss_dssp C-HH-----HHHHHHHHHHHHHH
T ss_pred C-HH-----HHHHHHHHHHHHhh
Confidence 6 44 67889999988864
No 22
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.55 E-value=5.3e-08 Score=78.19 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=53.4
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
+.+|.|| -++||+|||+.|.|+|+|+++|||+|.|...+. .+.+-.|.|++.
T Consensus 12 ~~~i~Ip------~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~----------------------~~~er~V~I~G~ 63 (106)
T 2hh3_A 12 GIDVPVP------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG----------------------TGPEKIAHIMGP 63 (106)
T ss_dssp CEEEEEE------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS----------------------SSSEEEEEEESS
T ss_pred EEEEEEC------HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC----------------------CCceeEEEEEeC
Confidence 4568888 578999999999999999999999999974210 012347888875
Q ss_pred CchhHHHHHHHHHHHHHHHccC
Q 023068 216 LPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
++ .+++|+++|++++.
T Consensus 64 -~e-----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 64 -PD-----RCEHAARIINDLLQ 79 (106)
T ss_dssp -HH-----HHHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHHh
Confidence 43 67899999999875
No 23
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=1.5e-07 Score=74.13 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=52.7
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
...+.|| -.++|+||||+|.|+|+|+++|||+|.|--.|.... ..=.|.|++.
T Consensus 18 ~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~---------------------~~~~V~I~G~ 70 (97)
T 2ctl_A 18 KLSVTVD------PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQ---------------------PQDQITITGY 70 (97)
T ss_dssp EEEEECC------TTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSS---------------------CSSEEEEESC
T ss_pred eEEEEEC------HHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCC---------------------CccEEEEEeC
Confidence 5567888 478999999999999999999999999976542110 1126889885
Q ss_pred CchhHHHHHHHHHHHHHHHccC
Q 023068 216 LPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
.+ .+.+|.++|+.++.
T Consensus 71 -~e-----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 71 -EK-----NTEAARDAILRIVG 86 (97)
T ss_dssp -HH-----HHHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHHH
Confidence 43 56788888888764
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.51 E-value=7.7e-08 Score=74.30 Aligned_cols=70 Identities=19% Similarity=0.368 Sum_probs=54.0
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
+.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...- .. ..+=.|.|+
T Consensus 13 ~~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~---~~-------------------~~~~~v~I~ 64 (89)
T 1j5k_A 13 IITTQVTIP------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL---EG-------------------SEDRIITIT 64 (89)
T ss_dssp EEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC---SS-------------------SSEEEEEEE
T ss_pred eEEEEEEEC------hhhcceeECCCCHhHHHHHHHhCCeEEecCCC---CC-------------------CCccEEEEE
Confidence 455678898 57999999999999999999999999996420 00 112378888
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+++|+++|+.++.
T Consensus 65 G~-~e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 65 GT-QD-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp EE-HH-----HHHHHHHHHHHHHH
T ss_pred cC-HH-----HHHHHHHHHHHHHH
Confidence 86 44 67889999998875
No 25
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.42 E-value=2.6e-07 Score=72.60 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
+..+.|| ..++|+||||+|.|+|+|+++|||+|.|-..|+.. +=.|.|++.
T Consensus 18 t~~i~Ip------~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~-----------------------~~~V~I~G~ 68 (95)
T 2ctm_A 18 SEDVPLD------HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD-----------------------PNCVTVTGL 68 (95)
T ss_dssp CEEEECC------TTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC-----------------------TTEEEEESC
T ss_pred EEEEEEC------HHHccccCCCCcchHHHHHHHHCCeEEecCCCCCC-----------------------CcEEEEEcC
Confidence 3567888 56789999999999999999999999996554311 126899885
Q ss_pred CchhHHHHHHHHHHHHHHHccC
Q 023068 216 LPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
++ .+++|++.|+.|+.
T Consensus 69 -~e-----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 69 -PE-----NVEEAIDHILNLEE 84 (95)
T ss_dssp -HH-----HHHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHHH
Confidence 33 57788888888753
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.27 E-value=7.9e-07 Score=74.39 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=56.4
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
....++.|| .+++|+|||++|.|+|+|+++|||+|.|-..|.- +.++.-.|.|+
T Consensus 84 ~~~~~i~vp------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--------------------~~~~~~~v~I~ 137 (163)
T 3krm_A 84 KLETHIRVP------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--------------------DENDQVIVKII 137 (163)
T ss_dssp CEEEEEEEE------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--------------------CTTSEEEEEEE
T ss_pred ceEEEEEcC------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--------------------CCCCceEEEEE
Confidence 345578888 5899999999999999999999999999764321 01233478899
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+ +++ .+++|.++|+.+|.
T Consensus 138 G-~~~-----~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 138 G-HFY-----ASQMAQRKIRDILA 155 (163)
T ss_dssp E-CHH-----HHHHHHHHHHHHHH
T ss_pred e-CHH-----HHHHHHHHHHHHHH
Confidence 9 454 67899999999986
No 27
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.22 E-value=1.8e-06 Score=73.22 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=53.0
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-....... ...+=.|.|++
T Consensus 104 ~~~~i~vp------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-------------------~~~~~~v~I~G 158 (174)
T 1j4w_A 104 QEFNFIVP------TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNA-------------------DPNMKLFTIRG 158 (174)
T ss_dssp CEEEEEEE------TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTS-------------------CTTEEEEEEEC
T ss_pred EEEEEEEC------hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCC-------------------CCCceEEEEEC
Confidence 35578888 478999999999999999999999999986421100 01122688888
Q ss_pred cCchhHHHHHHHHHHHHHHHcc
Q 023068 215 DLPANIVDIRLRQAQEIIEELL 236 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL 236 (287)
+++ .+++|.++|+++|
T Consensus 159 -~~~-----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 159 -TPQ-----QIDYARQLIEEKI 174 (174)
T ss_dssp -CHH-----HHHHHHHHHHHHC
T ss_pred -CHH-----HHHHHHHHHHHhC
Confidence 443 6789999999875
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.17 E-value=4.1e-06 Score=69.67 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=54.2
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
+.++.|| -+++|+|||++|.|+|+|+++|||+|.|--.+... ...+-.|.|++
T Consensus 3 ~~~~~Vp------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~--------------------~~~~r~v~I~G- 55 (164)
T 2jvz_A 3 VQEIMIP------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN--------------------TNVDKPLRIIG- 55 (164)
T ss_dssp EEEEEEC------TTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS--------------------SSSCEEEEEEE-
T ss_pred EEEEEec------hhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC--------------------CCCceEEEEEc-
Confidence 4578888 46799999999999999999999999995432110 01223688888
Q ss_pred CchhHHHHHHHHHHHHHHHccCCC
Q 023068 216 LPANIVDIRLRQAQEIIEELLKPV 239 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~p~ 239 (287)
+++ .+.+|...|..++...
T Consensus 56 ~~~-----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 56 DPY-----KVQQACEMVMDILRER 74 (164)
T ss_dssp CHH-----HHHHHHHHHHHHTTCS
T ss_pred CHH-----HHHHHHHHHHHHHHhc
Confidence 443 6789999999998743
No 29
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=1.2e-06 Score=73.13 Aligned_cols=70 Identities=26% Similarity=0.433 Sum_probs=53.3
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
...++.|| -+++|+|||++|.++|+|+++|||+|.|.+.. . |+ ..+=.|.|++
T Consensus 89 ~~~~i~vp------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~--~---------------~~----~~~~~v~I~G 141 (160)
T 2jzx_A 89 VTLRLVVP------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM--L---------------PN----STERAITIAG 141 (160)
T ss_dssp EEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCC--S---------------TT----CCEEEEEEEE
T ss_pred EEEEEEEC------hhheeeEECCCCHHHHHHHHHhCCeEEECCCC--C---------------CC----CCceEEEEEc
Confidence 45678888 58999999999999999999999999997521 0 00 1223788988
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+++ .+++|.++|.+++.
T Consensus 142 -~~~-----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 142 -IPQ-----SIIECVKQICVVML 158 (160)
T ss_dssp -CHH-----HHHHHHHHHHHHHH
T ss_pred -CHH-----HHHHHHHHHHHHHh
Confidence 454 57889999888763
No 30
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.07 E-value=2.2e-06 Score=71.38 Aligned_cols=67 Identities=24% Similarity=0.469 Sum_probs=51.5
Q ss_pred EEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 023068 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADL 216 (287)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~ 216 (287)
.++.|| -+++|+|||++|.|+|+|+++|||+|.|-.... . ..+=.|.|++.
T Consensus 93 ~~i~vp------~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~---~-------------------~~~~~v~I~G~- 143 (164)
T 2jvz_A 93 IDVPVP------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG---T-------------------GPEKIAHIMGP- 143 (164)
T ss_dssp BCCEEE------TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT---T-------------------SSEEEEEEESC-
T ss_pred EEEEEC------hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC---C-------------------CCcEEEEEEcC-
Confidence 346677 579999999999999999999999999975321 0 11237888875
Q ss_pred chhHHHHHHHHHHHHHHHccC
Q 023068 217 PANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 217 ~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
++ .+++|.++|+.++.
T Consensus 144 ~~-----~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 144 PD-----RCEHAARIINDLLQ 159 (164)
T ss_dssp HH-----HHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHHh
Confidence 43 67899999999875
No 31
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.05 E-value=2.4e-06 Score=67.29 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=50.9
Q ss_pred EEEecCCCCCCCCCcccceeCCCchhHHHHHHhh-CCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eT-gckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
..+.|| ..+++.||||+|.++|+|+++| ||+|.|--.|+.. =.|.|.+.
T Consensus 19 ~~i~Ip------~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~------------------------~~V~I~G~ 68 (95)
T 2ctj_A 19 VEVSIP------AKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGS------------------------DTVVIRGP 68 (95)
T ss_dssp EEEECC------HHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTC------------------------CEEEEESC
T ss_pred EEEEEC------HHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCc------------------------ceEEEEcC
Confidence 456788 5788999999999999999999 9999986544311 16888875
Q ss_pred CchhHHHHHHHHHHHHHHHccC
Q 023068 216 LPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. .+++|+++|+.++.
T Consensus 69 ~~------~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 69 SS------DVEKAKKQLLHLAE 84 (95)
T ss_dssp HH------HHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHh
Confidence 32 67899999998864
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.02 E-value=4e-06 Score=69.87 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=51.5
Q ss_pred eeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEE
Q 023068 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILI 212 (287)
Q Consensus 133 vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlI 212 (287)
+..+.++.|| -.++|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|
T Consensus 3 ~~~~~~~~vp------~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~------------------------~~r~v~I 52 (160)
T 2jzx_A 3 VTLTIRLLMH------GKEVGSIIGKKGESVKKMREESGARINISEGNC------------------------PERIITL 52 (160)
T ss_dssp CEEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT------------------------TEEEEEE
T ss_pred ccEEEEEEEc------hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCC------------------------CceEEEE
Confidence 4567788999 578999999999999999999999999976431 0126788
Q ss_pred EecCchhHHHHHHHHHHHHHHHcc
Q 023068 213 EADLPANIVDIRLRQAQEIIEELL 236 (287)
Q Consensus 213 sa~~~~~~~~~rl~~A~e~Ie~LL 236 (287)
++. ++ .+.+|...|.+++
T Consensus 53 ~G~-~~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 53 AGP-TN-----AIFKAFAMIIDKL 70 (160)
T ss_dssp EEE-HH-----HHHHHHHHHHHHH
T ss_pred EeC-HH-----HHHHHHHHHHHHH
Confidence 885 32 4667777776554
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.96 E-value=4.8e-06 Score=70.54 Aligned_cols=68 Identities=28% Similarity=0.504 Sum_probs=51.9
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEAD 215 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~ 215 (287)
..++.|| -+++|+|||++|.++|+|+++|||+|.|... +.. ..+-.|.|++.
T Consensus 4 ~~~~~vp------~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~~------------------~~~r~v~I~G~ 55 (174)
T 1j4w_A 4 MIDVPIP------RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----DGT------------------TPERIAQITGP 55 (174)
T ss_dssp EEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEEECC----TTS------------------CSEEEEEEEEC
T ss_pred EEEEEEC------hhheeeeecCCchHHHHHHHHhCCEEEEecC----CCC------------------CCccEEEEEeC
Confidence 4567888 4799999999999999999999999999642 100 11236788875
Q ss_pred CchhHHHHHHHHHHHHHHHccC
Q 023068 216 LPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 216 ~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
++ .+.+|+++|.+++.
T Consensus 56 -~~-----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 56 -PD-----RAQHAAEIITDLLR 71 (174)
T ss_dssp -HH-----HHHHHHHHHHHHHH
T ss_pred -HH-----HHHHHHHHHHHHHH
Confidence 33 57889999988875
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.94 E-value=9.4e-06 Score=67.78 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=34.1
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEecc
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGk 179 (287)
+.++.|| -.++|.|||++|.|+|+|+++|||+|.|--.
T Consensus 4 ~~~~~ip------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 4 MVQVFIP------AQAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp EEEEEEE------GGGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEec------hhhcceeECCCcHHHHHHHHHHCCeEEEcCC
Confidence 5678888 5789999999999999999999999999754
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.93 E-value=9e-06 Score=68.95 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=53.5
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
...++.|| -.++|+|||++|.++|+|+++|||+|.|-..+.... + ...=.|.|++
T Consensus 6 ~~~~i~vp------~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~------------~-------~~er~v~I~G 60 (178)
T 2anr_A 6 YFLKVLIP------SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP------------G-------TTERVCLIQG 60 (178)
T ss_dssp EEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT------------T-------SSEEEEEEEE
T ss_pred EEEEEEEC------hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC------------C-------CCCceEEEEe
Confidence 34578888 579999999999999999999999999964321110 0 0111577877
Q ss_pred cCchhHHHHHHHHHHHHHHHccCCC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLKPV 239 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~p~ 239 (287)
. ++ .+.+|.++|.+++.-.
T Consensus 61 ~-~~-----~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 61 T-IE-----ALNAVHGFIAEKIREM 79 (178)
T ss_dssp C-HH-----HHHHHHHHHHHHHTCC
T ss_pred C-HH-----HHHHHHHHHHHHHhcc
Confidence 4 33 5778999999888643
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=8.7e-06 Score=64.14 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=51.9
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCe-EEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR-VYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgck-I~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
.+..+.|| -.++|.+|||+|.|+|+|+++|||+ |.|-- | +=.|.|.
T Consensus 15 ~i~~i~I~------~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----d----------------------dG~V~I~ 61 (91)
T 2cpq_A 15 FHEEFVVR------EDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----D----------------------TGTFRIY 61 (91)
T ss_dssp EEEEEECC------HHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----T----------------------TTEEEEE
T ss_pred eEEEEEEC------hHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----C----------------------CCEEEEE
Confidence 34557788 4689999999999999999999998 99942 1 0179999
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+.+.+ .+++|.++|+.+-.
T Consensus 62 g~~~e-----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 62 GESAD-----AVKKARGFLEFVED 80 (91)
T ss_dssp ESSHH-----HHHHHHHHHSCCCC
T ss_pred ECCHH-----HHHHHHHHHHhhhe
Confidence 97765 67899999987654
No 37
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.89 E-value=5.1e-06 Score=70.49 Aligned_cols=72 Identities=17% Similarity=0.285 Sum_probs=53.9
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEA 214 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa 214 (287)
.+.++.|| .+++|+|||++|.|+|+|+++|||+|.|-......+ ..+=.|.|++
T Consensus 104 ~~~~i~Vp------~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~--------------------~~~~~v~I~G 157 (178)
T 2anr_A 104 NQVKIIVP------NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGIN--------------------LQNRVVTVSG 157 (178)
T ss_dssp GEEEEEEE------HHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------------------------CCEEEEEEES
T ss_pred eEEEEEEc------hhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCC--------------------CCceEEEEEc
Confidence 35678898 589999999999999999999999999975421000 1122677877
Q ss_pred cCchhHHHHHHHHHHHHHHHccCC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLKP 238 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~p 238 (287)
.. + .+++|+++|..+|.-
T Consensus 158 ~~-~-----~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 158 EP-E-----QNRKAVELIIQKIQE 175 (178)
T ss_dssp SH-H-----HHHHHHHHHHHHHHS
T ss_pred CH-H-----HHHHHHHHHHHHHHh
Confidence 53 2 678999999998763
No 38
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.77 E-value=2.4e-05 Score=69.02 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=43.3
Q ss_pred cccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHH
Q 023068 151 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQE 230 (287)
Q Consensus 151 fvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~e 230 (287)
.+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+ +++ .++.|..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-----------------------------~v~i~G-~~~-----~i~~Ar~ 152 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-----------------------------EVAIIG-DYE-----RAMAAKQ 152 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-----------------------------EEEEEE-EHH-----HHHHHHH
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-----------------------------EEEEEe-ChH-----HHHHHHH
Confidence 68999999999999999999999999762 355555 333 5688999
Q ss_pred HHHHccCC
Q 023068 231 IIEELLKP 238 (287)
Q Consensus 231 ~Ie~LL~p 238 (287)
.|+.|+.-
T Consensus 153 ~i~~li~g 160 (191)
T 1tua_A 153 AIEMLAEG 160 (191)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999874
No 39
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.76 E-value=1.9e-05 Score=80.59 Aligned_cols=67 Identities=21% Similarity=0.401 Sum_probs=54.3
Q ss_pred cceeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceE
Q 023068 131 YTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHI 210 (287)
Q Consensus 131 ~~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHV 210 (287)
+...++..+-|| -..||.||||+|.|+|.|+++|||+|.|--.| .|
T Consensus 563 ~~ap~~~~~~I~------~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G----------------------------~V 608 (630)
T 3u1k_A 563 ENGPVVETVQVP------LSKRAKFVGPGGYNLKKLQAETGVTISQVDEE----------------------------TF 608 (630)
T ss_dssp TTCCEEEEEECC------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSS----------------------------EE
T ss_pred ccCCeEEEEEeC------hhHhheeECCCChhHHHHHHHHCCEEEEcCCc----------------------------EE
Confidence 455567788888 47899999999999999999999999985321 79
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHcc
Q 023068 211 LIEADLPANIVDIRLRQAQEIIEELL 236 (287)
Q Consensus 211 lIsa~~~~~~~~~rl~~A~e~Ie~LL 236 (287)
.|.+.+.+ .+++|+++|+.++
T Consensus 609 ~I~~~~~~-----~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 609 SVFAPTPS-----AMHEARDFITEIC 629 (630)
T ss_dssp EEEESSHH-----HHHHHHHHTTC--
T ss_pred EEEeCCHH-----HHHHHHHHHHHHh
Confidence 99998765 6889999998875
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.62 E-value=4.1e-05 Score=68.65 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=44.5
Q ss_pred cccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHH
Q 023068 151 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQE 230 (287)
Q Consensus 151 fvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~e 230 (287)
.+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. ++ .++.|..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-----------------------------~v~i~G~-~~-----~i~~A~~ 183 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-----------------------------TVAIIGN-PI-----QIEIAKT 183 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-----------------------------EEEEEEC-HH-----HHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-----------------------------EEEEEeC-HH-----HHHHHHH
Confidence 58999999999999999999999999651 3667773 43 5788999
Q ss_pred HHHHccCC
Q 023068 231 IIEELLKP 238 (287)
Q Consensus 231 ~Ie~LL~p 238 (287)
.|+.|+.-
T Consensus 184 ~i~~li~g 191 (219)
T 2e3u_A 184 AIEKLARG 191 (219)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99999964
No 41
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.14 E-value=0.00033 Score=62.78 Aligned_cols=67 Identities=21% Similarity=0.361 Sum_probs=52.2
Q ss_pred eeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEE
Q 023068 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILI 212 (287)
Q Consensus 133 vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlI 212 (287)
..++.++.|| -+.+|.||||.|.|.|.|+++|||+|.|--. + =.|.|
T Consensus 32 aP~i~~i~IP------~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----~-----------------------g~V~I 78 (219)
T 2e3u_A 32 FKQEEYVKIP------KDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----T-----------------------GEVWI 78 (219)
T ss_dssp -CCEEEEECC------HHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----T-----------------------CEEEE
T ss_pred CCEEEEEEeC------HHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----C-----------------------CEEEE
Confidence 3345678899 4788999999999999999999999999521 1 14677
Q ss_pred EecC----chhHHHHHHHHHHHHHHHccC
Q 023068 213 EADL----PANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 213 sa~~----~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
.+.+ ++ .+++|.++|+.+..
T Consensus 79 ~~~~~t~d~~-----~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 79 TSTKETEDPL-----AVWKARDIVLAIGR 102 (219)
T ss_dssp EECTTCCSHH-----HHHHHHHHHHHHHT
T ss_pred ecCCCCCCHH-----HHHHHHHHHHHHhc
Confidence 7654 33 68899999999884
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.78 E-value=0.0014 Score=54.57 Aligned_cols=71 Identities=18% Similarity=0.410 Sum_probs=51.4
Q ss_pred EEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCC-eEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCc-eEEEEe
Q 023068 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGC-RVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPL-HILIEA 214 (287)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgc-kI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epL-HVlIsa 214 (287)
..|.|| =+.+|++||-+|.|+|.+++.||| +|.|.+..... .+ .++.+ -|.|++
T Consensus 69 ~~v~Vp------~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~--------------~~----~~~~~~~vtI~G 124 (144)
T 2qnd_A 69 DVIQVP------RNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN--------------VP----QEEGMVPFVFVG 124 (144)
T ss_dssp EEEEEE------GGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC--------------CC----CCTTEEEEEEEE
T ss_pred EEEEEC------HHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC--------------cc----ccCCeeEEEEEe
Confidence 567777 378899999999999999999998 99998753110 01 12222 366777
Q ss_pred cCchhHHHHHHHHHHHHHHHccC
Q 023068 215 DLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 215 ~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
. ++ .++.|.++|+..|.
T Consensus 125 ~-~~-----~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 125 T-KD-----SIANATVLLDYHLN 141 (144)
T ss_dssp E-HH-----HHHHHHHHHHHHHH
T ss_pred C-HH-----HHHHHHHHHHHHHH
Confidence 4 32 67889999998874
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.73 E-value=0.00035 Score=72.34 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=11.7
Q ss_pred ceeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEE
Q 023068 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHIL 211 (287)
Q Consensus 132 ~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVl 211 (287)
...++..+-|| -..||.+|||+|.|+|.|+++||++|.|--.| .|.
T Consensus 567 ~ap~~~~~~i~------~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG----------------------------~v~ 612 (726)
T 4aid_A 567 FAPKIETINIP------TDKIREVIGSGGKVIREIVATTGAKVDINDDG----------------------------VVK 612 (726)
T ss_dssp SCCC----------------------------------------------------------------------------
T ss_pred cCCeEEEEeCC------HHHHHhhcCCCchhHHHHHHHHCCceeEECCc----------------------------eEE
Confidence 34445667777 35789999999999999999999999886433 456
Q ss_pred EEecCchhHHHHHHHHHHHHHHHccCCC
Q 023068 212 IEADLPANIVDIRLRQAQEIIEELLKPV 239 (287)
Q Consensus 212 Isa~~~~~~~~~rl~~A~e~Ie~LL~p~ 239 (287)
|.+.+.+ .+++|++.|+.++...
T Consensus 613 I~~~~~~-----~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 613 VSASDGA-----KIKAAIDWIKSITDEA 635 (726)
T ss_dssp -CCSCHH-----HHHHHHHC--------
T ss_pred EEeCCHH-----HHHHHHHHHHHHhhhh
Confidence 6666544 6778888888887643
No 44
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.16 E-value=0.011 Score=46.65 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=46.7
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHh-hCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEAT-TGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIE 213 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~e-TgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIs 213 (287)
.+.+|.|| -.|-+.|||++|.|+|+|+++ ++|.|.+=. . + + -|.|+
T Consensus 27 ~t~~i~vp------~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--------~----~--------------~-~ItI~ 73 (102)
T 2ctf_A 27 TVSSVAAP------SWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--------G----E--------------D-KITLE 73 (102)
T ss_dssp EEEEEECC------STTHHHHHTTTTCHHHHHHHHCSSSEEEECS--------S----S--------------C-EEEEE
T ss_pred EEEEEEeC------HHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--------C----C--------------C-EEEEE
Confidence 45678899 356689999999999999996 688886542 1 1 0 57787
Q ss_pred ecCchhHHHHHHHHHHHHHHHccC
Q 023068 214 ADLPANIVDIRLRQAQEIIEELLK 237 (287)
Q Consensus 214 a~~~~~~~~~rl~~A~e~Ie~LL~ 237 (287)
+. ++ .+++|.+.|+.++.
T Consensus 74 G~-~~-----~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 74 GP-TE-----DVSVAQEQIEGMVK 91 (102)
T ss_dssp EC-HH-----HHHHHHHHHHHHHH
T ss_pred CC-HH-----HHHHHHHHHHHHHH
Confidence 75 32 56778888877764
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=95.64 E-value=0.016 Score=55.76 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=52.4
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCc--hhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEE
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHIL 211 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG--~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVl 211 (287)
+.+.++.|| ..|.+.|||.+| .++++|.++|||+|.+=..++-+ .. ... ..=-|.
T Consensus 29 ~VTl~v~Ip------~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~--~~---------~~~------ks~~Vt 85 (376)
T 3n89_A 29 RVTLNMEFE------SQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGG--TT---------PDP------FAQQVT 85 (376)
T ss_dssp EEEEEEECC------GGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCS--SS---------CCT------TTTEEE
T ss_pred EEEEEEEEc------hhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccc--cC---------CcC------CCCeEE
Confidence 456778888 688899999999 99999999999999995543101 00 000 001588
Q ss_pred EEecCchhHHHHHHHHHHHHHHHc
Q 023068 212 IEADLPANIVDIRLRQAQEIIEEL 235 (287)
Q Consensus 212 Isa~~~~~~~~~rl~~A~e~Ie~L 235 (287)
|++. ++ .+++|.+.|..+
T Consensus 86 ItG~-~e-----nVE~AR~~I~~l 103 (376)
T 3n89_A 86 ITGY-FG-----DVDRARMLMRRN 103 (376)
T ss_dssp EEEE-HH-----HHHHHHHHHHHS
T ss_pred EEcC-HH-----HHHHHHHHHHhc
Confidence 9885 33 678899999885
No 46
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.17 E-value=0.0085 Score=62.02 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=0.0
Q ss_pred eeeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccCCCC
Q 023068 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIK 183 (287)
Q Consensus 133 vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~k 183 (287)
..++..+-|| ...+|.+|||+|.|++.|.++||++|-|.+.|.+.
T Consensus 558 ap~~~~~~i~------~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~v~ 602 (723)
T 3cdi_A 558 APRIHTIKIN------PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVK 602 (723)
T ss_dssp ---------------------------------------------------
T ss_pred CceEEEEEEC------HHHhcccccccceeeeeeehhhCceEEecCCccEE
Confidence 3445556676 35678999999999999999999999998766443
No 47
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=93.65 E-value=0.026 Score=46.79 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhC
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTG 171 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTg 171 (287)
++++.|| -.++|.+||++|.++|+|++++|
T Consensus 5 ~~~~~Vp------~~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 5 HEQFIVR------EDLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp EEEEECC------GGGHHHHHCGGGHHHHHHHTSTT
T ss_pred EEEEEEC------CcceeeEECCChhHHHHHHHHHC
Confidence 4678888 57899999999999999999999
No 48
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.05 E-value=0.0069 Score=63.00 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=13.7
Q ss_pred eeEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEeccC
Q 023068 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180 (287)
Q Consensus 134 kk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRGkG 180 (287)
.++..+-||. ..+|.+|||+|.++|.|+++||++|.|-+.|
T Consensus 597 p~~~~~~I~~------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG 637 (757)
T 1e3p_A 597 PRIITVKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDG 637 (757)
T ss_dssp CBCCCC------------------------CTTCCCCCSCC------
T ss_pred ceeEEEEECh------HHeehcccccceeeehhhHhhCCEEEecCCc
Confidence 3444566774 5569999999999999999999999887644
No 49
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=90.56 E-value=0.083 Score=44.50 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCcccceeCCCchhHHHHHHhhCCeEEEe
Q 023068 149 FNFVGRLLGPRGNSLKRVEATTGCRVYIR 177 (287)
Q Consensus 149 ~NfvGrIlGPrG~TlK~lE~eTgckI~IR 177 (287)
-..+|.||||+|+.++.||..|++.|.|-
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 57899999999999999999999999997
No 50
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=90.20 E-value=0.11 Score=45.61 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=32.6
Q ss_pred EEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEec
Q 023068 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178 (287)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IRG 178 (287)
+.+|.|| -+-+|.|+|..|.|.|.|++.+||+|.|-.
T Consensus 5 ~~~i~VP------~~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 5 RIYVKVK------PERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp CEEEECC------GGGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred ceEEECC------HHHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 3568888 477899999999999999999999999964
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=86.43 E-value=0.54 Score=45.25 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=41.9
Q ss_pred CcccceeCCCc--hhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHH
Q 023068 150 NFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQ 227 (287)
Q Consensus 150 NfvGrIlGPrG--~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~ 227 (287)
-++..|||-+| .++++|.++|||+|..=..++..+.. .+.-.|.|++ ..+ .+..
T Consensus 195 ~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~------------------~~~~~ItItG-s~e-----~V~~ 250 (376)
T 3n89_A 195 YYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETR------------------GNIYEIKVVG-NID-----NVLK 250 (376)
T ss_dssp GGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------------------------CCEEEEEEES-CHH-----HHHH
T ss_pred HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCccccc------------------CCceEEEEEe-CHH-----HHHH
Confidence 45788999999 56699999999999986655322210 0112677777 232 6788
Q ss_pred HHHHHHHcc
Q 023068 228 AQEIIEELL 236 (287)
Q Consensus 228 A~e~Ie~LL 236 (287)
|.+.|..+|
T Consensus 251 Ark~I~~lL 259 (376)
T 3n89_A 251 ARRYIMDLL 259 (376)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhhC
Confidence 999999987
No 52
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=84.45 E-value=0.06 Score=44.52 Aligned_cols=49 Identities=20% Similarity=0.178 Sum_probs=33.6
Q ss_pred cccccCCCCCC-CccccccCcCCCCCCCCCCCcccccCCCC-CCCCCCCCCCC
Q 023068 76 DRLRHRSPSPM-ASSNLMSNVAGTGLGGWNGLPQERLGGPP-GMTMDWQSAPA 126 (287)
Q Consensus 76 d~~~~~SP~p~-~~~g~~~N~~~~~~~~~~~l~~Er~~~~~-~~~~d~~~~p~ 126 (287)
+..+++||.|. ...|.+.||++ ++.+..|..||+.+++ .+.++..+.|+
T Consensus 68 ~~~RSPSPpP~Yd~~G~R~NTRE--~R~r~~LE~ER~~lIe~~~k~~P~fkpP 118 (124)
T 4fxw_B 68 PEDRSPSPEPIYNSEGKRLNTRE--FRTRKKLEEERHNLITEMVALNPDFKPP 118 (124)
T ss_dssp TTSSCCCCCCCBCTTSCBSSCHH--HHHHHHHHHHHHHHHHHGGGTCSSCCCC
T ss_pred cccCCCCCCCccCccccccchHH--HHHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence 33566666655 44788999995 6777889999998765 55666655443
No 53
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=76.26 E-value=12 Score=33.15 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=51.3
Q ss_pred CcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHH
Q 023068 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQ 229 (287)
Q Consensus 150 NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~ 229 (287)
+.+.|++||+|.-+..|.+.++|+|.| |. ++ .|+|.+.++... ..+..|+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----NG-----------------------~IWi~~~~~~~~--~~~~~ai 206 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----NG-----------------------RIHLECPNEDLE--AIAVMAI 206 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----TT-----------------------EEEEECSCHHHH--HHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----CC-----------------------EEEEecCCHHHH--HHHHHHH
Confidence 688999999999999999999999988 42 11 799998776543 3677788
Q ss_pred HHHHHccCCCCcchHHHHHH
Q 023068 230 EIIEELLKPVDESQDYIKRQ 249 (287)
Q Consensus 230 e~Ie~LL~p~~e~~D~lK~~ 249 (287)
..|+.--. +.+-.|.+|+-
T Consensus 207 ~~~e~~~~-~~~l~~~v~~~ 225 (235)
T 2z0s_A 207 KIIDEEAY-TSGLTKRIIKF 225 (235)
T ss_dssp HHHHHCSC-CTTCHHHHHHH
T ss_pred HHHHhhhh-hhhHHHHHHHH
Confidence 88877554 44555556543
No 54
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=70.35 E-value=1.6 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.6
Q ss_pred CcccceeCCCchhHHHHHHhhCCeEEEec
Q 023068 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRG 178 (287)
Q Consensus 150 NfvGrIlGPrG~TlK~lE~eTgckI~IRG 178 (287)
+-+|..+|++|..+|.+++++|-||-|--
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 44999999999999999999999997775
No 55
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=46.85 E-value=38 Score=29.76 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=48.9
Q ss_pred CcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHH
Q 023068 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQ 229 (287)
Q Consensus 150 NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~ 229 (287)
+.+.|++|+++.-++.|.+.++|.|.| |. . =.|+|.+.+. -...+..|+
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~----N-----------------------G~IWi~~~~~---~~~~~~~ai 193 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ----N-----------------------GLIWVNGDRR---KVSIAEEAI 193 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT----T-----------------------SEEEEESCHH---HHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC----C-----------------------cEEEEeCCch---hHHHHHHHH
Confidence 677799999999999999999999988 42 1 1688986432 233567788
Q ss_pred HHHHHccCCCCcchHHHHHHHHHHHH
Q 023068 230 EIIEELLKPVDESQDYIKRQQLRELA 255 (287)
Q Consensus 230 e~Ie~LL~p~~e~~D~lK~~QL~ELA 255 (287)
..|+.--. +.+-.|.+| +-|++.-
T Consensus 194 ~~~e~~~~-~~~l~~~v~-~~l~~~~ 217 (229)
T 2ba0_A 194 YLIEQEAH-TEGLTDRVA-EFIKRRK 217 (229)
T ss_dssp HHHHHCSC-CSSHHHHHH-HHHHHHH
T ss_pred HHHHhhhh-hhhHHHHHH-HHHHHhc
Confidence 88876443 233344444 3355543
No 56
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=43.47 E-value=8.8 Score=34.95 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.6
Q ss_pred CCCCCCcccceeCCCchhHHHH-HHhhCCeEEEec
Q 023068 145 TYPNFNFVGRLLGPRGNSLKRV-EATTGCRVYIRG 178 (287)
Q Consensus 145 ~~P~~NfvGrIlGPrG~TlK~l-E~eTgckI~IRG 178 (287)
.-|+++-||..+|++|+.++.+ ++..|=||-|--
T Consensus 121 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 3488999999999999999999 888899999875
No 57
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=43.24 E-value=3.5 Score=37.13 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=35.2
Q ss_pred CcccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHH
Q 023068 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQ 229 (287)
Q Consensus 150 NfvGrIlGPrG~TlK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~ 229 (287)
+.+.|++||+|.-+..|.+.++|.|.| |. . =.|+|.+.++... ..+..|+
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~----N-----------------------G~IWi~~~~~~~~--~~~~~aI 213 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFV-AN----N-----------------------GRIWATCPSRFSE--EILIEAI 213 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEE-CT----T-----------------------SEEEC-----CTT--CCTHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-EC----C-----------------------cEEEEeCCCHHHH--HHHHHHH
Confidence 577899999999999999999999988 42 1 1688887765432 1455666
Q ss_pred HHHHHccCCCCcchHHHHH
Q 023068 230 EIIEELLKPVDESQDYIKR 248 (287)
Q Consensus 230 e~Ie~LL~p~~e~~D~lK~ 248 (287)
..|+.--. +.+-.|.+|+
T Consensus 214 ~~~e~~~~-~~~l~~~v~~ 231 (251)
T 2je6_I 214 RKIENESH-IKGLTDRIKQ 231 (251)
T ss_dssp TTTTTTTT-CC--------
T ss_pred HHHHhhhh-hhhHHHHHHH
Confidence 66655422 2333344443
No 58
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=40.83 E-value=10 Score=36.24 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCCCCcccceeCCCchhHHHHHHhh-CCeEEEec
Q 023068 145 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 178 (287)
Q Consensus 145 ~~P~~NfvGrIlGPrG~TlK~lE~eT-gckI~IRG 178 (287)
.-|+++-||..+|++|..++.|.++. |=||-|--
T Consensus 244 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 244 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999999999999 99999886
No 59
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=40.03 E-value=34 Score=31.75 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=33.4
Q ss_pred HHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHH
Q 023068 164 KRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 233 (287)
Q Consensus 164 K~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~e~Ie 233 (287)
.++-+.-|+++.+.||...+.+.|. =||.+.+++.+ .+..++..+.+.++
T Consensus 350 ~~~~~~p~~~~~~ygk~~~~~~rkm-------------------Ghv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 350 ECALSIPNASIHLYSKGAAKPGRKM-------------------GHITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp HHHTTSTTEEEEECCCCSCCTTCEE-------------------EEEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCCCee-------------------EEEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 4444567899999998666654441 29999998754 44556666666655
No 60
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=34.97 E-value=11 Score=31.79 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=18.4
Q ss_pred ccceeCCCchhHHHHHHhhC
Q 023068 152 VGRLLGPRGNSLKRVEATTG 171 (287)
Q Consensus 152 vGrIlGPrG~TlK~lE~eTg 171 (287)
.|+|||-+|.|++.||--+.
T Consensus 44 ~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHH
Confidence 59999999999999999884
No 61
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=31.75 E-value=24 Score=31.55 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=31.0
Q ss_pred ceeeEEEEecCCCCCCCCCcccceeCCCchhHHHH--------HHhhCCeEEEe
Q 023068 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRV--------EATTGCRVYIR 177 (287)
Q Consensus 132 ~vkk~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~l--------E~eTgckI~IR 177 (287)
.+.....|++.-+. -.|-|||-+|..+|+| |+..||||.+.
T Consensus 237 ~~~i~a~i~ve~~~-----~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDREN-----LKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSGG-----GHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccCC-----cceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 45555667777554 3489999999999976 66789988875
No 62
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=26.95 E-value=28 Score=32.87 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=29.8
Q ss_pred CCCCCCcccceeCCCchhHHHHHHhh-CCeEEEec
Q 023068 145 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 178 (287)
Q Consensus 145 ~~P~~NfvGrIlGPrG~TlK~lE~eT-gckI~IRG 178 (287)
.-|+++-+|..+|++|+.++.+..+. |=||-|=-
T Consensus 240 ~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 240 NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 34889999999999999999999998 77887754
No 63
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=26.17 E-value=28 Score=29.45 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.1
Q ss_pred hHHHHHHhhCCeEEEeccC
Q 023068 162 SLKRVEATTGCRVYIRGKG 180 (287)
Q Consensus 162 TlK~lE~eTgckI~IRGkG 180 (287)
.+|+||++.|++++.|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999863
No 64
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=24.80 E-value=2.2e+02 Score=21.92 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=31.7
Q ss_pred hhHHHHHHhh-CCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhHHHHHHHHHHHHHHHcc
Q 023068 161 NSLKRVEATT-GCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELL 236 (287)
Q Consensus 161 ~TlK~lE~eT-gckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~~~~~~rl~~A~e~Ie~LL 236 (287)
.++..|+... +..|.||--|+ | .-++|++++.+.+ .++..++...+.|+.++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT----------E-------------P~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT----------E-------------DIVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS----------S-------------SSEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC----------c-------------cEEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 4556666654 55899998653 1 2379999998753 44444555555555443
No 65
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=24.39 E-value=16 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred eEEEEecCCCCCCCCCcccceeCCCchhHHHHHHhhCCeEEEe
Q 023068 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 177 (287)
Q Consensus 135 k~~kv~IPv~~~P~~NfvGrIlGPrG~TlK~lE~eTgckI~IR 177 (287)
+...|.||-++ .++.||-+|.+++-..+-||++|-|.
T Consensus 103 ~~~~V~V~~~q------~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSEDD------KGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECTTT------HHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEEChHH------hhhccCCCCHHHHHHHHHhCCeeCce
Confidence 44567788544 48999999999999999999998775
No 66
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=24.03 E-value=37 Score=31.40 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=26.5
Q ss_pred HHHHHHhhCCeEEEeccCCCCCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023068 163 LKRVEATTGCRVYIRGKGSIKDPDKVSTPEDKLRGRPGYEHLNDPLHILIEADLPA 218 (287)
Q Consensus 163 lK~lE~eTgckI~IRGkGS~kd~~k~~~~Ee~lrg~p~~ehl~epLHVlIsa~~~~ 218 (287)
..++-+.-|+++.+-|| ..|.+.|. =||.+.+++.+
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~rkm-------------------Ghv~~~~~~~~ 326 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPGRKV-------------------GHLNLTDSDTS 326 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTTCEE-------------------EEEEEECSCHH
T ss_pred HHHHHhCCCCEEEEcCC-CCCCCCee-------------------EEEEEEcCCHH
Confidence 45566678999999999 66665541 19999998754
Done!