BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023069
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust.
Identities = 194/270 (71%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
Query: 18 SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
S+ + AQ Q KDY +PPPAP F+ GEL WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 2 SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 61
Query: 77 VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
SK C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct: 62 HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALV 121
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
YMI QCLGAICG +VK F K Y GGGAN ++ GY+KG LGAEI+GTFVLVYTVFS
Sbjct: 122 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 181
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 182 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 241
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
WIFW GPFIGAA+AA YHQ V+RA K+
Sbjct: 242 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/270 (71%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
Query: 18 SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
S+ + AQ Q KDY +PPPAP F+ GEL WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 2 SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 61
Query: 77 VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
SK C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct: 62 HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALV 121
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
YMI QCLGAICG +VK F K Y GGGAN ++ GY+KG LGAEI+GTFVLVYTVFS
Sbjct: 122 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 181
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 182 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 241
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
WIFW GPFIGAA+AA YHQ V+RA K+
Sbjct: 242 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 271
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/270 (71%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
Query: 18 SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
S+ + AQ Q KDY +PPPAP F+ GEL WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 25 SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 84
Query: 77 VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
SK C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+SL RA+
Sbjct: 85 HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALV 144
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
YMI QCLGAICG +VK F K Y GGGAN ++ GY+KG LGAEI+GTFVLVYTVFS
Sbjct: 145 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 205 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 264
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
WIFW GPFIGAA+AA YHQ V+RA K+
Sbjct: 265 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 294
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 218/270 (80%), Gaps = 1/270 (0%)
Query: 18 SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
S+ + AQ Q KDY +PPPAP F+ GEL WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 21 SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 80
Query: 77 VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
SK C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+ L RA+
Sbjct: 81 HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALV 140
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
YMI QCLGAICG +VK F K Y GGGAN ++ GY+KG LGAEI+GTFVLVYTVFS
Sbjct: 141 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 200
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 201 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 260
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
WIFW GPFIGAA+AA YHQ V+RA K+
Sbjct: 261 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 290
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 193/270 (71%), Positives = 218/270 (80%), Gaps = 1/270 (0%)
Query: 18 SQPIGTAAQT-QDVKDYTEPPPAPLFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG 76
S+ + AQ Q KDY +PPPAP F+ GEL WSF+RA IAEF+AT LFLYITV TV+G
Sbjct: 25 SKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIG 84
Query: 77 VSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVF 136
SK C +VG+ GIAWAFGGMIF LVYCTAGISGGHINPAVTFGLFLARK+ L RA+
Sbjct: 85 HSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALV 144
Query: 137 YMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS 196
YMI QCLGAICG +VK F K Y GGGAN ++ GY+KG LGAEI+GTFVLVYTVFS
Sbjct: 145 YMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFS 204
Query: 197 ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDD 256
ATD KR+ARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD
Sbjct: 205 ATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDD 264
Query: 257 HWIFWAGPFIGAALAALYHQIVIRAIPFKS 286
WIFW GPFIGAA+AA YHQ V+RA K+
Sbjct: 265 QWIFWVGPFIGAAVAAAYHQYVLRAAAIKA 294
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 138/232 (59%), Gaps = 12/232 (5%)
Query: 52 FYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCSTVGIQG---IAWAFGGMIFALVYCT 107
F+RA +AEF+A LF++I++ + +G KS +T +Q ++ AFG I L
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 108 AGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA 167
ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI A++ G S + G
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGL 128
Query: 168 NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLA 227
N L+ G + G GLG EI+GT LV V + TD +R PL IGF+V L HL
Sbjct: 129 NALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGFSVALGHLL 184
Query: 228 TIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
I TG GINPARS G+++I + Q DHWIFW GPFIGAALA L + ++
Sbjct: 185 AIDYTGCGINPARSFGSSVITHNFQ---DHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 139/233 (59%), Gaps = 16/233 (6%)
Query: 52 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG---IAWAFGGMIFALVYCTA 108
F+RA +AEF+AT LF++I++ + +G T +Q ++ AFG I L
Sbjct: 10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQT-AVQDNVKVSLAFGLSIATLAQSVG 68
Query: 109 GISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG--G 166
ISG H+NPAVT GL L+ ++S+ RA+ Y+I QC+GAI A++ G S + G G
Sbjct: 69 HISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS---LTGNSLG 125
Query: 167 ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHL 226
N L+ G + G GLG EI+GT LV V + TD +R RD + APL IG +V L HL
Sbjct: 126 RNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSVALGHL 181
Query: 227 ATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
I TG GINPARS G+A+I + + +HWIFW GPFIG ALA L + ++
Sbjct: 182 LAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 12/239 (5%)
Query: 51 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ ++V + + S++ V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANM 169
SGGHINPAVT + RK+S+ ++VFY+ QCLGAI GA ++ + + ++GG G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 170 LSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 229
+ + G GL E++ TF LV+T+F++ D+KR V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 230 PITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 287
TG +NPARS G A+I W++HWI+W GP IGA LA ALY + + K +
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 239
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 12/239 (5%)
Query: 51 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ ++V + + S++ V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 111 SGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANM 169
SGGHINPAVT + RK+S+ ++VFY+ QCLGAI GA ++ + + ++GG G
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 166
Query: 170 LSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 229
+ + G GL E++ TF LV+T+F++ D KR V L IGF+V + HL I
Sbjct: 167 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 222
Query: 230 PITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 287
TG +NPARS G A+I W++HWI+W GP IGA LA ALY + + K +
Sbjct: 223 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 278
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 137/239 (57%), Gaps = 12/239 (5%)
Query: 51 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ ++V + + S++ V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANM 169
SGGHINPAVT + RK+S+ ++VFY+ QCLGAI GA ++ + + ++GG G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTT 127
Query: 170 LSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 229
+ + G GL E++ TF LV+T+F++ D KR V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 230 PITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA-ALYHQIVIRAIPFKSK 287
TG +NPARS G A+I W++HWI+W GP IGA LA ALY + + K +
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 239
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 11/229 (4%)
Query: 51 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
+F++A AEF+A +F+ +++ + + ++ K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTE-KPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 111 SGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANM 169
SGGHINPAVT + RK+S+ ++VFY+ QCLGAI GA ++ + + ++GG G M
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTM 118
Query: 170 LSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 229
+ + G GL E++ TF LV+T+F++ D+KR + L IGF+V + HL I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSI----ALAIGFSVAIGHLFAI 174
Query: 230 PITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIV 278
TG +NPARS G A+I W++HWI+W GP IGA LA ++ V
Sbjct: 175 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 126/235 (53%), Gaps = 15/235 (6%)
Query: 46 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVY 105
EL S SF+RA AEF A+ +++ +G S + +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 165
ISG H+NPAVTF + ++SL RA+ YM+ Q LGA+ GAAV+ + + + G
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 166 GA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 224
A N L G S G EI T V +F+ D +RN R V L +GF++ L
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 225 HLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
HL + TG G+NPARS A++ + + +HW++W GP IGA L +L + ++
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 126/235 (53%), Gaps = 15/235 (6%)
Query: 46 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVY 105
EL S SF+RA AEF AT +++ +G S + +Q +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 165
ISG H+NPAVTF + ++SL RA+ Y++ Q LGA+ GAAV+ + + + G
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGN 115
Query: 166 GA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLV 224
A N L G S G EI T V +F+ D +RN R V L +GF++ L
Sbjct: 116 LALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 225 HLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
HL + TG G+NPARS A++ + + +HW++W GP IGA L +L + ++
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 14/231 (6%)
Query: 46 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVY 105
E+ S +F +A AEF+AT +F++ + + + K S T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 106 CTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG 165
+SGGHINPA+T L + ++SL RA FY+ Q +GAI GA ++ G
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGN-L 118
Query: 166 GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLV 224
N L+ ++G + E++ TF L +F++TD++R + P+ +P L IG +V L
Sbjct: 119 AVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLG 173
Query: 225 HLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYH 275
HL I TG +NPARS G A++ N+ HW+FW GP +GA LAA+ +
Sbjct: 174 HLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILY 222
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 124/232 (53%), Gaps = 15/232 (6%)
Query: 49 SWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTA 108
S SF+RA AEF AT +++ +G S + +Q +A AFG + LV
Sbjct: 2 SASFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVG 56
Query: 109 GISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA- 167
ISG H+NPAVTF + ++SL RA+ Y++ Q LGA+ GAAV+ + + + G A
Sbjct: 57 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLAL 114
Query: 168 NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLA 227
N L G S G EI T V +F+ D +RN R V L +GF++ L HL
Sbjct: 115 NTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLF 170
Query: 228 TIPITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
+ TG G+NPARS A++ + + +HW++W GP IGA L +L + ++
Sbjct: 171 GMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 15/230 (6%)
Query: 51 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGI 110
SF+RA AEF AT +++ +G S + +Q +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFG----LGASLRWAPGPLHVLQ-VALAFGLALATLVQAVGHI 56
Query: 111 SGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NM 169
SG H+NPAVTF + ++SL RA+ Y++ Q LGA+ GAAV+ + + + G A N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNT 114
Query: 170 LSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATI 229
L G S G EI T V +F+ D +RN R V L +GF++ L HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 230 PITGTGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALAALYHQIVI 279
TG G+NPARS A++ + + +HW++W GP IGA L +L + ++
Sbjct: 171 YYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 100/218 (45%), Gaps = 17/218 (7%)
Query: 59 EFVATFLFLYITVLTVMGVSKSKSKCSTVG-----IQGIAWAFGGMIFALVYCTAGISGG 113
EFV TFLFL+ + + ++ + G + I++ FG + V+ T +SGG
Sbjct: 51 EFVGTFLFLW-SAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGG 109
Query: 114 HINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKG 173
++NPAVT L LAR + R + Q + + A + AN L G
Sbjct: 110 NLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAF----ANALGGG 165
Query: 174 YSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITG 233
S+ GL E GT +L TV K A AP IG A+ + HL I TG
Sbjct: 166 ASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTG 220
Query: 234 TGINPARSLGAALIYNKDQAWDDHWIFWAGPFIGAALA 271
G+NPARS G A+ + HWI+W GP +GA LA
Sbjct: 221 AGLNPARSFGPAVAARSFP--NYHWIYWLGPILGAFLA 256
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 94 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 152
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+HL +IP+T T +NPARS A I+ A + W FW
Sbjct: 153 TDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 209
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A L+HL +IP+T T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + Y GISGGH NPAV+ GL +A + + V Y+I Q GAI
Sbjct: 62 IGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAI 121
Query: 147 CGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDA 200
AA V K+ ++ G +N + GYS L EI+ T + + +T
Sbjct: 122 VAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGSTHG 181
Query: 201 KRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIF 260
+ A AP+ IG A+ L+HL +IP+T T +NPARS G AL + A W+F
Sbjct: 182 RVPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQAL-FVGGWALQQLWLF 234
Query: 261 WAGPFIGAALAALYHQI 277
W P +G A A+ ++
Sbjct: 235 WLAPIVGGAAGAVIWKL 251
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+HL +IP+T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 84/178 (47%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+HL +IP+T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+HL +IP+T T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 111/244 (45%), Gaps = 23/244 (9%)
Query: 51 SFYRAGIAEFVATFLFLYI----TVLTVMGVSKSKSK----------CSTVGIQGIAWAF 96
S + IAEF+ TF+ ++ +T+M S S I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 97 GGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQ 156
G I A +Y ISG HINPAVT GL+ +K V Y+I Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 157 KSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPL 215
+GG GA G S + AE+VGTF+L+ T+ +R + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 216 PIGFAVFLVHLATIPITGTGINPARSLGAAL---IYNKDQAWDDHWIFWAGPFIGAALAA 272
IG V + I+G+ +NPAR+ G L I+ W+ + I+ GP +GA LAA
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237
Query: 273 LYHQ 276
L +Q
Sbjct: 238 LTYQ 241
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+ L +IP+T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 87 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT GL+ + V Y+I Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSA--TDAKRNA 204
AA++ + + S GY + G ++ V V V SA A
Sbjct: 97 VAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHGA 155
Query: 205 RDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHWIFW 261
D P AP+ IG A+ L+ L +IP+T +NPARS A I+ A + W FW
Sbjct: 156 TDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVA-IFQGGWALEQLWFFW 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 118/265 (44%), Gaps = 54/265 (20%)
Query: 57 IAEFVATFLFLY-----ITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGIS 111
IAEF+ T L ++ + L V G S + + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG--------FQKSQYEML 163
G H+NPAVT L+L + + +++ Q GA C AA+V G F+++ + +
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 164 GGGANM-LSKGYSK--------GDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP 214
G ++ L+ +S E+V T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 215 LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHW---------------I 259
L IG + ++ + P+TGT +NPAR G K AW W +
Sbjct: 181 LLIGLLIAVIGASMGPLTGTAMNPARDFGP-----KVFAWLAGWGNVAFTGGRDIPYFLV 235
Query: 260 FWAGPFIGAALAAL-YHQIVIRAIP 283
GP +GA + A Y +++ R +P
Sbjct: 236 PLFGPIVGAIVGAFAYRKLIGRHLP 260
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 117/265 (44%), Gaps = 54/265 (20%)
Query: 57 IAEFVATFLFLY-----ITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGIS 111
IAEF+ T L ++ + L V G S + + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG--------FQKSQYEML 163
G H+NPAVT L+L + + +++ Q GA C AA+V G F+++ + +
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 164 GGGANM-LSKGYSK--------GDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAP 214
G ++ L+ +S E+V T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 215 LPIGFAVFLVHLATIPITGTGINPARSLGAALIYNKDQAWDDHW---------------I 259
L IG + ++ + P+TG +NPAR G K AW W +
Sbjct: 181 LLIGLLIAVIGASMGPLTGFAMNPARDFGP-----KVFAWLAGWGNVAFTGGRDIPYFLV 235
Query: 260 FWAGPFIGAALAAL-YHQIVIRAIP 283
GP +GA + A Y +++ R +P
Sbjct: 236 PLFGPIVGAIVGAFAYRKLIGRHLP 260
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 100/241 (41%), Gaps = 29/241 (12%)
Query: 58 AEFVATFLFLY-------ITVLTVMGVSKSK--SKCSTVGIQGIAWAFGGMIFAL----- 103
AE V TF+ ++ IT++ G K + W GM FAL
Sbjct: 11 AEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALAIAAV 70
Query: 104 VYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEML 163
+Y ISG HINPAVT L+ + V Y++ Q +GA G+ + +
Sbjct: 71 IYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAATV 130
Query: 164 GG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVF 222
GG GA G G + E +GTF+L+ + +R P A L IG V
Sbjct: 131 GGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAP-----PGFAGLVIGLTVG 185
Query: 223 LVHLATIPITGTGINPARSLGAALIYNKD-----QAWDDHWIFWAGPFIGAALAA-LYHQ 276
+ ITG+ +NPAR+ G Y D W I+ GP +GA AA LY+
Sbjct: 186 GIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNY 242
Query: 277 I 277
+
Sbjct: 243 L 243
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 102/246 (41%), Gaps = 26/246 (10%)
Query: 52 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG----IAWAFGGMIFALVYCT 107
FY++ + EF+ FL + VL +G + + T G+ G + +G +F + +
Sbjct: 5 FYKSYVREFIGEFLGTF--VLMFLG-EGATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61
Query: 108 AGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA 167
A +SG H+N AV+ GL K L + Y Q LGA G + V G Y +
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL----YHGFISNS 117
Query: 168 NMLSKGYSKGDGLGAEIVGTFV--LVYTVFSATDAKRNARDS-----HVPILAPLPIGFA 220
+ + + G F L+ T ++ H+ L+ + +G
Sbjct: 118 KIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSV-VGLI 176
Query: 221 VFLVHLATIPITGTGINPARSLGAALI----YNKDQAWDDHWIFW---AGPFIGAALAAL 273
+ + + TG +NP+R LG+ + Y KD D++ FW P +G+ +
Sbjct: 177 ILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQ 236
Query: 274 YHQIVI 279
++ VI
Sbjct: 237 FYDKVI 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,518,687
Number of Sequences: 62578
Number of extensions: 344773
Number of successful extensions: 963
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 36
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)