Your job contains 1 sequence.
>023070
MKNLPPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN
LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK
KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF
RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVR
EDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKKDADDAEILADDLAS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023070
(287 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 1203 2.4e-122 1
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 591 1.7e-57 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 582 1.6e-56 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 582 1.6e-56 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 580 2.5e-56 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 579 3.3e-56 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 579 3.3e-56 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 577 5.3e-56 1
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 571 2.3e-55 1
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 571 2.3e-55 1
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 562 2.1e-54 1
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 561 2.6e-54 1
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 553 1.9e-53 1
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 491 5.3e-49 2
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 506 1.8e-48 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 343 3.7e-48 2
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 494 3.3e-47 1
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 471 9.1e-45 1
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 467 2.4e-44 1
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 465 3.9e-44 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 462 8.1e-44 1
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 458 2.2e-43 1
UNIPROTKB|H0YGW8 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 369 5.8e-34 1
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 362 3.2e-33 1
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 346 1.6e-31 1
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 337 1.4e-30 1
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 335 2.3e-30 1
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 330 7.9e-30 1
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 328 1.3e-29 1
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 326 2.1e-29 1
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 326 2.1e-29 1
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 304 4.5e-27 1
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 302 7.3e-27 1
WB|WBGene00016674 - symbol:C45G9.2 species:6239 "Caenorha... 302 7.3e-27 1
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 284 5.9e-25 1
UNIPROTKB|A6QPA8 - symbol:DUS4L "DUS4L protein" species:9... 283 7.6e-25 1
UNIPROTKB|I3LP14 - symbol:DUS4L "Uncharacterized protein"... 281 1.2e-24 1
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 281 1.2e-24 1
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 281 1.2e-24 1
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 277 3.3e-24 1
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 277 3.3e-24 1
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 279 7.5e-24 1
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 270 1.8e-23 1
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 270 1.8e-23 1
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 270 1.8e-23 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 273 3.2e-23 1
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 273 3.2e-23 1
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 272 4.1e-23 1
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 266 4.8e-23 1
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 265 2.4e-22 1
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 262 5.2e-22 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 255 7.0e-22 1
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 260 8.7e-22 1
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 250 2.4e-21 1
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 251 8.5e-21 1
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 242 1.7e-20 1
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 241 2.1e-20 1
UNIPROTKB|J3QQL9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 235 9.2e-20 1
UNIPROTKB|Q884C6 - symbol:dusC "tRNA-dihydrouridine synth... 232 1.9e-19 1
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 232 1.9e-19 1
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 232 1.9e-19 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 232 1.9e-19 1
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 230 3.1e-19 1
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 230 3.1e-19 1
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 229 4.0e-19 1
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 229 4.0e-19 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 234 5.5e-19 1
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 227 6.5e-19 1
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 226 8.3e-19 1
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 226 8.3e-19 1
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 225 1.1e-18 1
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 225 1.1e-18 1
UNIPROTKB|P33371 - symbol:dusC "tRNA-dihydrouridine synth... 218 5.8e-18 1
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 217 7.5e-18 1
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 217 2.4e-17 1
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 215 5.2e-17 1
UNIPROTKB|J3QLD5 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 207 8.6e-17 1
UNIPROTKB|E7EUN9 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 208 3.5e-16 1
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 205 4.6e-16 1
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 209 5.8e-16 1
UNIPROTKB|Q9KT00 - symbol:dusC "tRNA-dihydrouridine synth... 198 6.2e-15 1
TIGR_CMR|VC_1105 - symbol:VC_1105 "conserved hypothetical... 198 6.2e-15 1
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 200 1.1e-14 1
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 199 2.8e-14 1
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 196 1.1e-13 1
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 194 2.7e-13 1
CGD|CAL0003882 - symbol:SMM1 species:5476 "Candida albica... 191 3.3e-13 1
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 193 3.8e-13 1
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 190 5.7e-13 1
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 191 7.2e-13 1
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 189 1.4e-12 1
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 184 1.7e-12 1
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 184 1.7e-12 1
UNIPROTKB|Q607T6 - symbol:MCA1669 "tRNA-dihydrouridine sy... 184 1.9e-12 1
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 188 1.9e-12 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 168 1.6e-10 1
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 168 1.6e-10 1
FB|FBgn0032819 - symbol:CG10463 species:7227 "Drosophila ... 171 2.6e-10 1
UNIPROTKB|Q0C5H0 - symbol:dusA "tRNA-dihydrouridine synth... 164 5.0e-10 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 164 8.0e-10 1
WARNING: Descriptions of 20 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 227/268 (84%), Positives = 244/268 (91%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
EDRPLFVQFCANDP+ LL AA+RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS
Sbjct: 141 EDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 200
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
LVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW
Sbjct: 201 LVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 260
Query: 127 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
+AIK VKNA+RIPVLANGNVR +EDV C++ETG EGVLSAE+LLENPA FAGFRTAEW
Sbjct: 261 SAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWA 320
Query: 187 VGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 245
+EE DG LDQ DL+VEYLKLCEK+PVPWRMIRSHVHK+LGEWFRI P VRE LNA
Sbjct: 321 KDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLNA 380
Query: 246 QNRLTFEFLYNLVDRLRELGVRIPLYKK 273
QN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 381 QNILTFEFLYGLVDQLRELGGRVPLYKK 408
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 117/243 (48%), Positives = 155/243 (63%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
EDRPL QFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YG FL D L++
Sbjct: 104 EDRPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEK 163
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
+++ L+VP++CKIRVFP ++ T+KYAKMLE AGC LL VHGRT+D+K A W
Sbjct: 164 MIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIASW 223
Query: 127 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
IKAV+ A+ IPV ANGN++H+ DV C+EETG +GV+SAE L NPALF G W
Sbjct: 224 KHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFEGRSPPVW- 282
Query: 187 VGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIRSHVHKLLGEWFRIQPGVREDL-N 244
++ EYL + EK+ P +R+H+ KL +I +REDL
Sbjct: 283 ---------------EMAEEYLDIVEKHSPCSLSFVRAHIFKLWHHTLQIHQDLREDLAK 327
Query: 245 AQN 247
A+N
Sbjct: 328 AKN 330
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 113/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 113/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 113/238 (47%), Positives = 156/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+ AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------------ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 112/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 112/238 (47%), Positives = 155/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 111/238 (46%), Positives = 156/238 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 110/238 (46%), Positives = 154/238 (64%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 191 WEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 110/238 (46%), Positives = 154/238 (64%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VP++CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W I+AV+ A+ IPV ANGN++ + DV++C+ +TG GV+SAE L NPALF G W
Sbjct: 191 WEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
++ EYL++ +KYP P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------EMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREEL 292
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 106/240 (44%), Positives = 158/240 (65%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFC N+PE ++ AA+ +E +CD +D+NLGCPQ+IARRGNYG+FL+D ++
Sbjct: 104 PEDRPLVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIIL 163
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+V++L ++ VP+ CKIR+ PNL DTIK A L++AGC LL +HGRT+++K A+
Sbjct: 164 PIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIAN 223
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W AI+ ++ L IPV+ANG+V ED+ +CLEETG +GV+SAE +L NP+ F+G + +
Sbjct: 224 WKAIRTIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLKVPIY 283
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 245
++++ EY+ E Y + RSH+ K+L E + +RE + A
Sbjct: 284 -----QVAR-----------EYIDFTEIYKTSIHVTRSHIFKMLKEKLDVYSDLRETMGA 327
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 109/238 (45%), Positives = 153/238 (64%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ + + PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMRTWGHMVVGCPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 115/246 (46%), Positives = 154/246 (62%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL +QFC ND + +L+AA + +CD VDINLGCPQ IA+RG+YG+FL D L+
Sbjct: 80 PEDRPLIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLT 139
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+V L L VPV+CKIR+F +L+ TI+YAKMLE AGC LL VHGRTR++K A+
Sbjct: 140 EIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVAN 199
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
WN IK V+ ++IP+LANGN+ ++DV +CL ETG +GV+SAE L NPA+F G W
Sbjct: 200 WNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVW 259
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG--VREDL 243
+ EYL+L + +P P IR H+ KL I+ +R+ L
Sbjct: 260 ----------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYL 303
Query: 244 NAQNRL 249
N+L
Sbjct: 304 ATANQL 309
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 491 (177.9 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 105/245 (42%), Positives = 150/245 (61%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PE+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 126 WNAIKAV-KNALRIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
W I+ + KN VL ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP-----WRMIRSHVHKLLGEWFRIQPG 238
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 239 VREDL 243
+R L
Sbjct: 303 IRSKL 307
Score = 37 (18.1 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 232 WFRIQPGVR 240
W+R+QP +R
Sbjct: 360 WWRVQPYIR 368
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 90/162 (55%), Positives = 121/162 (74%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SA
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSA 232
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 343 (125.8 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 66/134 (49%), Positives = 92/134 (68%)
Query: 60 NLPLVKSLVEKLAL---NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 116
NL + + +++ L L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++
Sbjct: 105 NLGCPQMIAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQ 164
Query: 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
K A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPAL
Sbjct: 165 KGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPAL 224
Query: 177 FAGFRTAEWIVGSE 190
F G A W + E
Sbjct: 225 FEGRSPAVWELAEE 238
Score = 177 (67.4 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARR 50
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+R
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 88/170 (51%), Positives = 122/170 (71%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ + PV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMSILAWTTSSXPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175
W IKAV+ A+ IPV ANGN++ + DV++C+++TG +GV+SA + +PA
Sbjct: 191 WEHIKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSPA 240
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 89/176 (50%), Positives = 124/176 (70%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P DRPLFVQFCANDP+ NAAR V PYCD VD+NLGCPQ IARRG+YGAFL ++ L+
Sbjct: 119 PAIDRPLFVQFCANDPDDFFNAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLI 178
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
L+ KL + L VPV+ K R+ + + T++YAKM+ AG S++ +HGRTR++K A
Sbjct: 179 YKLINKLHMELEVPVTAKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLA 238
Query: 125 DWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
DW+ I+ +++ L + ANGN + +D+ +CLE TG +GV+SAE L +P++FA
Sbjct: 239 DWSYIRYLRDNLPPDTVIFANGNNLNHDDLARCLEATGADGVMSAEGNLSDPSIFA 294
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 102/252 (40%), Positives = 150/252 (59%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +L
Sbjct: 86 DRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNL 145
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 146 INTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWE 205
Query: 128 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F
Sbjct: 206 TIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN------- 258
Query: 186 IVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVRE 241
VG + +K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 259 -VGQTK-NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRS 316
Query: 242 DLNAQN-RLTFE 252
L N + T+E
Sbjct: 317 TLATMNAKATWE 328
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 101/246 (41%), Positives = 148/246 (60%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQFCANDP+ LL AA+ +E CD +D+NLGCPQ IAR+G YGAFLMD+ LV L
Sbjct: 117 DRPLVVQFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKL 176
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
++ L NL++PV+ KIR++ + + ++KYAKM+ DAG + VHGRTR+ K A+W
Sbjct: 177 IKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTREMKGQATGLANWK 236
Query: 128 AIKAVKNAL-RIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
+K +++ L + V +NGN+ + D+Q+C ET C+ V+SAE L NP +F W
Sbjct: 237 ILKYLRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPGVF-------W 289
Query: 186 IVGSEEISKDGNLDQAD-LLVEYLKLC-EKYP--VPWRMIRSHVHKLLGEWFRIQPGVRE 241
+ +KD + D +L EY ++ E Y ++SH KLL + + +R
Sbjct: 290 TLDD---NKDKQFPRVDKILREYFEIVKENYDSLASRHAMKSHFFKLLHAFLEVHKELRP 346
Query: 242 DLNAQN 247
+ N
Sbjct: 347 IIGKAN 352
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 94/224 (41%), Positives = 136/224 (60%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQFCAN + L A R VE CD VD+NLGCPQ +A+RG YG++L D + L+ +
Sbjct: 127 DRPLVVQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEM 186
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
V + +P+SCKIRV + Q T++YAK L DAG ++L VHGRTRD K + ADW+
Sbjct: 187 VSAVRDYCRLPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWS 246
Query: 128 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF--AGFRTA 183
I+ V A+ R+PV+ANGN++ DV++C++ TG ++SAE LL NP +F A
Sbjct: 247 RIRDVVEAVGSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLIFDDANAHVD 306
Query: 184 EWIVGSE--EISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHV 225
W + +E E +K N + + ++C + + +R V
Sbjct: 307 TWKIAAEYLEYAKKFNAGTSAIRAHVFRICHHSLLEYEDLRMRV 350
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 88/176 (50%), Positives = 120/176 (68%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P DRPLFVQFCANDP LL AA+ V PYCD VD+NLGCPQ IAR+G+YGAFL ++ L+
Sbjct: 114 PAIDRPLFVQFCANDPSALLEAAKHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQELI 173
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
L+ +L L++PV+ KIR+ + T+ YA+ + DAG S+L VHGR R++K A
Sbjct: 174 HKLIRQLHDGLSIPVTAKIRILDTPEATLAYARNVLDAGASILTVHGRRREQKGHLTGVA 233
Query: 125 DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
DW+AI+ ++ L + ANGN+ D+++CLE TG + V+SAE L +P LFA
Sbjct: 234 DWSAIRHLRENLPPETVIFANGNILQRGDLERCLEATGADAVMSAEGNLSDPTLFA 289
>UNIPROTKB|H0YGW8 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000538833 Uniprot:H0YGW8
Length = 298
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 134
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 8 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 67
Query: 135 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 194
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 68 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 118
Query: 195 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 119 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 160
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 77/176 (43%), Positives = 111/176 (63%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQF A D + L +AA V P+ D VD+N GCPQR A YGA L++ LVK +
Sbjct: 70 DRPLIVQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDM 129
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V + ++ P VS KIR+ +++ T+ + +E AG S + VHGRT E+
Sbjct: 130 VRHVRNQIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIERHQP---V 186
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++ IK +K++L IPV+ANG+++ M+DV+ E TG +GV+SA LL NPA+F+GF
Sbjct: 187 HYDTIKTIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGF 242
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 74/173 (42%), Positives = 107/173 (61%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF N+ E L++AA +V+ YC +DIN GCPQR + +GA L+ + + +
Sbjct: 109 DEPLIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGANLLLHPERIYDM 168
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
V+++ + +P+S KIRV +L+DTI+ AK E G S + VHGRT K D++
Sbjct: 169 VKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHP--VDYD 226
Query: 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
AIK VK+ + +PV ANG+V + + E+TG GV+SA LL NPALF G+
Sbjct: 227 AIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGY 279
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 72/176 (40%), Positives = 108/176 (61%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +E+
Sbjct: 141 VKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
+++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 74/176 (42%), Positives = 106/176 (60%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 141 VKQVRNQVENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
+ AIK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYEAIKIIKENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGY 253
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 70/176 (39%), Positives = 106/176 (60%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF A + ++L +AA V P+ D VD+N GCPQR A YGA L++ LV+ +
Sbjct: 69 DNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDM 128
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V + ++ P VS KIR+ +L+ T+ K E G S + VHGR +E+
Sbjct: 129 VRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEERHQP---V 185
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K ++ IPV+ANG+++ ++D + TG +GV+ A LL NPA+FAG+
Sbjct: 186 HYDAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAGY 241
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 72/176 (40%), Positives = 105/176 (59%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +
Sbjct: 81 DCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V ++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 141 VRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 72/176 (40%), Positives = 105/176 (59%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AA V PY +DIN GCPQR A YGA L++ LV +
Sbjct: 81 DCPLIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V ++ + P VS KIR+ +L TI + +E G S + VHGRT +E+
Sbjct: 141 VRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 72/176 (40%), Positives = 105/176 (59%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AA V PY +DIN GCPQR A YGA L++ LV +
Sbjct: 81 DCPLIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V ++ + P VS KIR+ +L TI + +E G S + VHGRT +E+
Sbjct: 141 VRQVRNRVENPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 69/176 (39%), Positives = 100/176 (56%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+D+PL QF A DP + +A+ + PY D +D+N GCPQ A YG ++ LV
Sbjct: 76 DDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVHQ 135
Query: 67 LVEKLALNL--NVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+V+++ L + VS K+R+ +LQ TI A+ LE AG + L +HGRT +K K
Sbjct: 136 VVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTFLTLHGRTPAQKHSKD 195
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
D A+ V+ +L+IP++ NGNV D E+TG GV++A LL NPALF
Sbjct: 196 -TLDIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMAARGLLANPALF 250
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 69/180 (38%), Positives = 102/180 (56%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D L +QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V L
Sbjct: 73 DASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKL 132
Query: 68 VE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
V K L + KIR+ +L T +++E +G ++ VHGRTR +D F +
Sbjct: 133 VRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVN 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
+AI+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 191 LDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 78/256 (30%), Positives = 128/256 (50%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF +DP +L AA V VD+N GCP+ R +G+ L+ L+ +
Sbjct: 48 DSPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADM 107
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V + + P VS KIR+ +++ T+ + E AG + L VHGRT ++
Sbjct: 108 VRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---I 164
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 184
D A++ VK+++ +P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 165 DIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP 224
Query: 185 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG-VREDL 243
+D + +++L +Y + W + H+ +L F Q V +L
Sbjct: 225 ----------------SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQRRVFNEL 268
Query: 244 NAQNRLTFEFLYNLVD 259
N + + FL NL+D
Sbjct: 269 NGRLAID-HFLNNLLD 283
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 67/184 (36%), Positives = 99/184 (53%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
ED PL VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S
Sbjct: 92 EDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCS 151
Query: 67 LVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
+V K + + KIR+ L +T++ + L DAG + +HGRTR + + A
Sbjct: 152 MVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--A 209
Query: 125 DWNAIK-AVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
+ +AIK ++N +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+
Sbjct: 210 NLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYT 269
Query: 182 TAEW 185
T W
Sbjct: 270 TCPW 273
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 62/159 (38%), Positives = 94/159 (59%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L T+ + E G S + VHGRT +E+
Sbjct: 141 VKQVRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163
+ AIK +K ++ IP++ANG++R +++ + TG +G
Sbjct: 198 HYEAIKIIKESMSIPIVANGDIRSLKEAENVWHTTGTDG 236
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 63/158 (39%), Positives = 93/158 (58%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LVK +
Sbjct: 83 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVKDM 142
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L T+ + E G S + VHGRT +E+
Sbjct: 143 VKQVRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVEERHQP---V 199
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162
+ AIK +K ++ IPV+ANG++R +++ + TG +
Sbjct: 200 HYEAIKIIKESMSIPVIANGDIRSLKEAENVWHMTGTD 237
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 83/252 (32%), Positives = 135/252 (53%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLM 58
M +L E P+ VQ + PE + AAR VE +DIN+GCP +I + G GA LM
Sbjct: 59 MIDLQGEAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALM 117
Query: 59 DNLPLVKSLVEKLALNLNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDE 116
L + +V + ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR++
Sbjct: 118 LKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQ 177
Query: 117 -KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175
GK ADW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ NP
Sbjct: 178 FYSGK---ADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPW 234
Query: 176 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 235
L + ++ E + K ++A++ + + + K+ + +R + K G +F+
Sbjct: 235 LIQ--QIVFYLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYFKG 291
Query: 236 QPG---VREDLN 244
PG +RE LN
Sbjct: 292 LPGASRLREILN 303
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 83/252 (32%), Positives = 135/252 (53%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLM 58
M +L E P+ VQ + PE + AAR VE +DIN+GCP +I + G GA LM
Sbjct: 59 MIDLQGEAMPVAVQIFGSSPEKMAEAARIVEEAGASMIDINMGCPAPKIVKNGE-GAALM 117
Query: 59 DNLPLVKSLVEKLALNLNVPVSCKIRV-FP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDE 116
L + +V + ++VPVS KIR F N + I++A+ +E AG L+ VHGRTR++
Sbjct: 118 LKPELAEKIVMAVKNAVSVPVSVKIRKGFDDNTVNAIEFAQRMEAAGADLITVHGRTREQ 177
Query: 117 -KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175
GK ADW I+ VK A+++ V NG+V + ++ LE TG + V+ +++ NP
Sbjct: 178 FYSGK---ADWEIIRRVKQAVKVKVAGNGDVDSPQKAKEMLELTGVDFVMIGRAVMGNPW 234
Query: 176 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRI 235
L + ++ E + K ++A++ + + + K+ + +R + K G +F+
Sbjct: 235 LIQ--QIVFYLERGEILPKPSPQEKAEVALRHFEYLLKFKGEYIAVRE-MRKHGGWYFKG 291
Query: 236 QPG---VREDLN 244
PG +RE LN
Sbjct: 292 LPGASRLREILN 303
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 79/252 (31%), Positives = 135/252 (53%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR K A+++ I
Sbjct: 129 VAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCM--YKGNAEYDTI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
KA+K + IPV+ANG++ E + L+ TG + ++ P +F + ++
Sbjct: 187 KAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ--HYLETG 244
Query: 190 EEISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNR 248
+++ +Q +++E+L KL + Y ++ IR K +G W+ Q R+ N+
Sbjct: 245 NKLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYLDQEDQRQFRADFNQ 301
Query: 249 L-TFEFLYNLVD 259
L T Y+LV+
Sbjct: 302 LETAAEQYSLVE 313
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 79/252 (31%), Positives = 135/252 (53%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR K A+++ I
Sbjct: 129 VAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCM--YKGNAEYDTI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
KA+K + IPV+ANG++ E + L+ TG + ++ P +F + ++
Sbjct: 187 KAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREIQ--HYLETG 244
Query: 190 EEISKDGNLDQADLLVEYL-KLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNR 248
+++ +Q +++E+L KL + Y ++ IR K +G W+ Q R+ N+
Sbjct: 245 NKLAPIEVAEQRQVMLEHLTKLYDLYG-EYKGIR-FARKHIG-WYLDQEDQRQFRADFNQ 301
Query: 249 L-TFEFLYNLVD 259
L T Y+LV+
Sbjct: 302 LETAAEQYSLVE 313
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 279 (103.3 bits), Expect = 7.5e-24, P = 7.5e-24
Identities = 58/173 (33%), Positives = 99/173 (57%)
Query: 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
R +F Q DPE L A+ VE VD+N+GCP+ + +G G+ L+ + +++++
Sbjct: 88 RVVF-QMGTADPERALAVAKLVENDVAAVDVNMGCPKEYSTKGGMGSALLSDPEKIEAIL 146
Query: 69 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 128
L ++ PV+CKIR+ ++DT+ K +E G + +AVHGR +DE+ D+
Sbjct: 147 TTLVKGISKPVTCKIRILSTIEDTVNLVKRIEKTGVAAIAVHGRMKDERPRHPVHCDY-- 204
Query: 129 IKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AV ++ +PV+ANG V+ ED++ E TG V+ A + + NP++F
Sbjct: 205 IQAVAQSVSVPVIANGGSSDIVKEFEDIETFRESTGASSVMLARAAMWNPSVF 257
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 85/268 (31%), Positives = 147/268 (54%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGA-FL 57
M + ++PL +Q + E L++AA+ V+ Y D +DIN+GCP + + GA +L
Sbjct: 65 MLYIDEREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWL 124
Query: 58 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTR 114
+D + + +V + + PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR
Sbjct: 125 LDPNKIYE-MVAAVVDAVEKPVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTR 182
Query: 115 DEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ +GK ADW+ IK VK A+ IPV+ NG+V +D ++ L+E G +GV+ + L +
Sbjct: 183 VQMYEGK---ADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGD 239
Query: 174 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLG 230
P + +RT +++ E + + ++ D+ + +L +L + V R +R H L
Sbjct: 240 PWMI--YRTVKYLETGELMPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL- 296
Query: 231 EWFRIQPGVREDLNAQNRLTFEFLYNLV 258
+ R VR +NA N T E L N++
Sbjct: 297 KGIRGNANVRNGINACN--TREDLANVL 322
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 85/268 (31%), Positives = 147/268 (54%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGA-FL 57
M + ++PL +Q + E L++AA+ V+ Y D +DIN+GCP + + GA +L
Sbjct: 65 MLYIDEREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWL 124
Query: 58 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD---TIKYAKMLEDAGCSLLAVHGRTR 114
+D + + +V + + PV+ K+R+ + +D I+ AK +E AG ++AVHGRTR
Sbjct: 125 LDPNKIYE-MVAAVVDAVEKPVTVKMRIGWD-EDHIFAIENAKAVERAGGQVVAVHGRTR 182
Query: 115 DEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ +GK ADW+ IK VK A+ IPV+ NG+V +D ++ L+E G +GV+ + L +
Sbjct: 183 VQMYEGK---ADWDIIKQVKQAVNIPVIGNGDVATPQDAKRMLDEIGVDGVMIGRAALGD 239
Query: 174 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL-KLCE--KYPVPWRMIRSHVHKLLG 230
P + +RT +++ E + + ++ D+ + +L +L + V R +R H L
Sbjct: 240 PWMI--YRTVKYLETGELMPEPTVREKIDVCMLHLDRLIDLKNESVAVREMRKHAAWYL- 296
Query: 231 EWFRIQPGVREDLNAQNRLTFEFLYNLV 258
+ R VR +NA N T E L N++
Sbjct: 297 KGIRGNANVRNGINACN--TREDLANVL 322
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 60/176 (34%), Positives = 102/176 (57%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 64
P DRPL +Q +DP+++ A V+ Y D +DIN+GCP +++ G G+ LM V
Sbjct: 66 PGDRPLGIQLFGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGA-GSALMREPDKV 124
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDT--IKYAKMLEDAGCSLLAVHGRTRDEK-DGKK 121
+++V + +P++ KIR + +D I+ A++ E+ GC+ + +H R+R + +G
Sbjct: 125 RAIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLHPRSRAQMFEGT- 183
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
ADW + +K A+ IPV+ +G++ DV L+ TGC+GV+ A L NP +F
Sbjct: 184 --ADWTKLAELKQAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIF 237
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 273 (101.2 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 62/187 (33%), Positives = 102/187 (54%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ R +F Q +D E L AR VE +D+N+GCP+ + +G GA L+ + ++
Sbjct: 81 QSRVVF-QMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+ +
Sbjct: 140 ILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA--GF 180
I+A+ L IPV+ANG H++ D++ + T V+ A + + NP++F G
Sbjct: 199 -VIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFLKDGL 257
Query: 181 RTAEWIV 187
R E ++
Sbjct: 258 RPLEEVM 264
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 273 (101.2 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 62/187 (33%), Positives = 102/187 (54%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ R +F Q +D E L AR VE +D+N+GCP+ + +G GA L+ + ++
Sbjct: 81 QSRVVF-QMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR RDE+ +
Sbjct: 140 ILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA--GF 180
I+A+ L IPV+ANG H++ D++ + T V+ A + + NP++F G
Sbjct: 199 -VIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPSIFLKDGL 257
Query: 181 RTAEWIV 187
R E ++
Sbjct: 258 RPLEEVM 264
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 272 (100.8 bits), Expect = 4.1e-23, P = 4.1e-23
Identities = 60/187 (32%), Positives = 104/187 (55%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
++R +F Q +D E L AR VE +D+N+GCP++ + +G GA L+ + ++
Sbjct: 81 QNRVVF-QMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+ +
Sbjct: 140 ILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESLLENPALFA--GF 180
IKA+ + L IPV+ANG +++ D++ + T V+ A + + NP++F G
Sbjct: 199 -VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLKEGL 257
Query: 181 RTAEWIV 187
R E ++
Sbjct: 258 RPLEEVM 264
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 69/225 (30%), Positives = 113/225 (50%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D+ + VQ N+ + + + P+ D + IN GCP + R GA LM + LV L
Sbjct: 80 DKCVIVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAEL 139
Query: 68 VE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ K ++ + KIR+ ++ TI + + +AG L VHGRT++ + D
Sbjct: 140 IKTAKDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLD 199
Query: 126 WNAIKAVK-NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 184
AIK ++ N IPV+ANG+ + D QK ++ TG +GV+SA +L NPALF G
Sbjct: 200 --AIKIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLDKTP 257
Query: 185 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 229
W + E+ +L L Y +P+++ + H+ KL+
Sbjct: 258 W--SAVEM--------------FLHLVTAYGLPYKLAQYHLAKLM 286
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 265 (98.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 58/175 (33%), Positives = 94/175 (53%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
E + Q +D E L AR VE +D+N+GCP+ + +G GA L+ + ++
Sbjct: 80 EQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+ +
Sbjct: 140 ILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALF 177
AIKA+ L IPV+ANG H++ D++ T V+ A + + NP++F
Sbjct: 199 -AIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPSIF 252
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 262 (97.3 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 58/175 (33%), Positives = 97/175 (55%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ R +F Q +D E L A+ VE +D+N+GCP+ + +G GA L+ + ++
Sbjct: 81 QSRVVF-QMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+ +
Sbjct: 140 ILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALF 177
AIKA+ L IPV+ANG H++ D++ + T V+ A + + NP++F
Sbjct: 199 -AIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSVF 252
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 54/175 (30%), Positives = 95/175 (54%)
Query: 3 NLPPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNL 61
+L P + +Q +P+++ AA+ E +DIN GCP + G G++LM +
Sbjct: 61 SLSPREDITAIQLAGFEPDVMAEAAKINEDMGAKIIDINFGCPVKKVVNGYAGSYLMKDE 120
Query: 62 PLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119
++E + +PV+ K+R N ++ K AK+ ED G ++ +HGRTR +
Sbjct: 121 CHAAKILEATVKAVKIPVTLKMRTGWDENHRNAPKLAKIAEDLGIKMITIHGRTRAQM-- 178
Query: 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
K ++DW I+ VKN ++IPV+ANG+++ ED ++ L E+G +G++ P
Sbjct: 179 YKGKSDWQFIRTVKNTVKIPVIANGDIKTYEDAERALVESGADGIMIGRGAYGKP 233
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 260 (96.6 bits), Expect = 8.7e-22, P = 8.7e-22
Identities = 58/187 (31%), Positives = 102/187 (54%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ R +F Q +D + L A+ VE +D+N+GCP+ + +G GA L+ + ++
Sbjct: 81 QSRVVF-QMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L + PV+CKIR+ P+L+DT+ K +E G + + VHGR R+E+ +
Sbjct: 140 ILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKREERPQHPVSCE- 198
Query: 127 NAIKAVKNALRIPVLANGNVR-HME---DVQKCLEETGCEGVLSAESLLENPALFA--GF 180
AIKA+ + IPV+ANG H++ D++ + T V+ A + + NP++F G
Sbjct: 199 -AIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSIFLKEGL 257
Query: 181 RTAEWIV 187
R E ++
Sbjct: 258 RPLEEVM 264
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 54/149 (36%), Positives = 83/149 (55%)
Query: 37 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96
+DIN+GCP+ + +G GA L+ L+ ++ L NL+VPV+CKIR+ + DT++ A
Sbjct: 104 IDINMGCPKAFSIQGGMGAALLSKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELA 163
Query: 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156
+ +E G LAVHGR D + A W+ I V AL IPV+ANG+V +D +
Sbjct: 164 RRIEKLGVPALAVHGRKI--ADRPRDPAKWDEIADVVAALSIPVIANGDVLEYDDFSRIK 221
Query: 157 EETGCEGVLSAESLLENPALFAGFRTAEW 185
TG V+ A + N ++F+ + W
Sbjct: 222 TATGAASVMVARGAMWNASIFSPKGKSHW 250
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 251 (93.4 bits), Expect = 8.5e-21, P = 8.5e-21
Identities = 55/174 (31%), Positives = 97/174 (55%)
Query: 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
R +F Q + D L A+ VE +DIN+GCP+ + +G GA L+ + ++S++
Sbjct: 82 RVIF-QMGSADAGRALAVAKLVESDVAGIDINMGCPKEYSTKGGMGAALLSDPDKIESIL 140
Query: 69 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWN 127
L + PV+CKIR+ P+++DT+ K +E G + +AVHGR +K+ + + +
Sbjct: 141 TTLVKGICKPVTCKIRILPSVEDTVDLVKRIEKTGIAAIAVHGRLERKKEERPQHPVHCD 200
Query: 128 AIKAVKNALRIPVLANGN----VRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
IKA+ A+ IPV+ANG ++ D++ + T V+ A + + NP++F
Sbjct: 201 VIKAISEAVSIPVIANGGSHDFIKEYGDIETFQKATAASSVMIARAAMWNPSIF 254
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 74/251 (29%), Positives = 125/251 (49%)
Query: 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 64
+ P VQ D +++ +AAR VE +DIN+GCP +++ + A L D LV
Sbjct: 66 DPEPRSVQIAGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDE-QLV 124
Query: 65 KSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTR-DEKDGKK 121
+++ + ++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D G+
Sbjct: 125 NDILQAVVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTRADLYTGE- 183
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
A+++ I +K A+ IPV ANG++ E + L+ TG +G+L + P +F
Sbjct: 184 --AEYDTIAMIKQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFREIE 241
Query: 182 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKLLGEWFRIQPG 238
+++ + + + + +L+E+L + + R+ R HV G + PG
Sbjct: 242 --HYLLTGKTLPALQSSEVERILLEHLAALHVFYGDVMGVRIARKHV----GWYLATLPG 295
Query: 239 VREDLNAQNRL 249
RE NRL
Sbjct: 296 AREFRALFNRL 306
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 69/254 (27%), Positives = 123/254 (48%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ PEI+ AA+ E +D+N GCP + G G+ LM + + ++E +
Sbjct: 64 VQLAGCTPEIMAEAAKINEDLGAKSIDLNFGCPAKKVVDGYAGSALMKDEVIATKIMESV 123
Query: 72 ALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 128
+ VPV+ K+R+ NL + AK+ ED G ++ +HGRTR + ADW
Sbjct: 124 VKAVKVPVTVKMRMGWDTTNL-NAPTLAKVAEDVGIQMITIHGRTRSQMFSGS--ADWKF 180
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 188
+K VK ++IPV+ NG++R ++D+ L E+G +GV+ P L + ++
Sbjct: 181 VKRVKECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIK--QALSFMKN 238
Query: 189 SEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVH----KLLG-EWFRIQPGVR 240
SE + + ++ +++++ Y + +++R H+ G +FR Q
Sbjct: 239 SEILPEPTKSEKLAIILDHYDYALDYYGKDLGVKILRKHLSWYSSSYSGASYFRAQVNTM 298
Query: 241 ED-LNAQNRLTFEF 253
D + + +LT EF
Sbjct: 299 SDPVEVREKLT-EF 311
>UNIPROTKB|J3QQL9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 HGNC:HGNC:30086
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Ensembl:ENST00000577907 Uniprot:J3QQL9
Length = 152
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 41/88 (46%), Positives = 61/88 (69%)
Query: 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 70
L+ + C D +++ AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++ ++
Sbjct: 65 LYCEVCPEDRPLIVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILL 124
Query: 71 LALNLNVPVSCKIRVFPNLQDTIKYAKM 98
L+VPV+CKIRVFP + T++YA+M
Sbjct: 125 AHEKLSVPVTCKIRVFPEIDKTVRYAQM 152
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 54/171 (31%), Positives = 90/171 (52%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
PL +Q +DP L NAA E +D+N GCP + R GA L+ L+ ++V
Sbjct: 64 PLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ A+ ++PV+ K+R+ + N + A+ L D G + + VH RT+ DG K A
Sbjct: 124 SQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTK--VDGYKPPAH 181
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W I ++ +++PV+ANG + +ED ++C E G ++ L+ P L
Sbjct: 182 WEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDL 232
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/181 (30%), Positives = 93/181 (51%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ VQ +P + NA R +E VD N GCP ++ R N GA L+ +
Sbjct: 60 PSGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+V + A+ PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K
Sbjct: 120 HDIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYK 177
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
A W I V+ L IPV+ANG + + +D ++C++ TGC+ ++ + P L +
Sbjct: 178 PPAYWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIK 237
Query: 182 T 182
T
Sbjct: 238 T 238
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 51/166 (30%), Positives = 89/166 (53%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ DP I+ +AA+ E +DIN GCP + G+ LM + ++E +
Sbjct: 66 VQLAGCDPTIMADAAKLNEDMGAQIIDINFGCPVKKVVNSYAGSALMKDETTAAKILESV 125
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNA 128
+ +PV+ K+R N ++ K AK+ E+ G ++ +HGRTR + GK ADW
Sbjct: 126 VKAVKIPVTLKMRTGWDNNNLNSPKLAKIAEETGIKMITIHGRTRTQMFTGK---ADWKF 182
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
I+ +K ++IPV+ NG+++++ D++ LEE+ +G++ P
Sbjct: 183 IRNIKKCVKIPVIVNGDIKNLNDIKTSLEESQADGIMIGRGAYGKP 228
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 56/181 (30%), Positives = 93/181 (51%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ VQ +P + NA R +E VD N GCP ++ R N GA L+ +
Sbjct: 60 PSGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+V + A+ PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K
Sbjct: 120 HDIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYK 177
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
A W I V+ L IPV+ANG + + +D ++C++ TGC+ ++ + P L +
Sbjct: 178 PPAYWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIK 237
Query: 182 T 182
T
Sbjct: 238 T 238
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 74/260 (28%), Positives = 132/260 (50%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++ ++
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNA 128
++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 188
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F R + +
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF---REIQHYLD 242
Query: 189 SEEISKDGNLDQAD-LLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRIQPGVREDLN 244
+ E+ L + LL +++ + P +R+ R HV W+ +Q D
Sbjct: 243 TGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHV-----SWY-LQEHAPND-- 294
Query: 245 AQNRLTFEFLYNLVDRLREL 264
Q R TF + + ++L L
Sbjct: 295 -QFRRTFNAIEDASEQLEAL 313
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 58/205 (28%), Positives = 110/205 (53%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
+ P VQ D E+L A + + + D +D N GCP + G+ L++NL L K
Sbjct: 61 ENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFK 120
Query: 66 SLVEKLALNLNVPV-SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
+LV + N + S K R+ N + K AK+ E G +++HGRTR + K A
Sbjct: 121 NLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGVDFISIHGRTRKQLYSGK--A 178
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 184
D+ +I + K +++IPV+ANG++ + ++ ++ + T C+G++ + + NP +F ++ +
Sbjct: 179 DYGSIASAKASVKIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWIFYEIKSGK 237
Query: 185 WIVGSEEISKDGNLDQADLLVEYLK 209
+ E++ K+ L D ++++ K
Sbjct: 238 SV--DEKLKKEIILTHFDEMIKHYK 260
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 60/173 (34%), Positives = 95/173 (54%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNL-PLV 64
P+ VQ PE + NAA+ +E +D+N GCP + + G+ L+ +NL ++
Sbjct: 68 PVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQII 127
Query: 65 KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
K++ E A+ + VS KIR+ + + I+ + +E AG + L +H RT+ E G K
Sbjct: 128 KAVKE--AVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELTIHARTKLE--GYKPP 183
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A W+ I VKNA+ IPV+ANG + ++ED KC E +GC ++ L P L
Sbjct: 184 AHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGALTIPNL 236
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 60/173 (34%), Positives = 95/173 (54%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNL-PLV 64
P+ VQ PE + NAA+ +E +D+N GCP + + G+ L+ +NL ++
Sbjct: 68 PVRVQLLGQYPEYMAENAAKVIELGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQII 127
Query: 65 KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
K++ E A+ + VS KIR+ + + I+ + +E AG + L +H RT+ E G K
Sbjct: 128 KAVKE--AVPSDTIVSAKIRLGYEDKTLAIENGQAVEAAGANELTIHARTKLE--GYKPP 183
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A W+ I VKNA+ IPV+ANG + ++ED KC E +GC ++ L P L
Sbjct: 184 AHWHWIAKVKNAINIPVIANGEIWNLEDAIKCREISGCTDLMVGRGALTIPNL 236
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 234 (87.4 bits), Expect = 5.5e-19, P = 5.5e-19
Identities = 60/211 (28%), Positives = 107/211 (50%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
E L +Q +D L + ++ +DIN+GCP+ + +G GA L+ +
Sbjct: 93 ETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMGAALLADPDKAAH 152
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L L++PV+CKIR+ P+++ TI + L G + + +H RTRDE+ + A
Sbjct: 153 ILRTLCSGLDIPVTCKIRILPDVEGTIDLVQKLAATGIAAIGIHARTRDERP--QHPAHP 210
Query: 127 NAIKAVKNALRIPVLANGNVRHM---EDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
++AV A+ IP++ANG ++M +D++K E G + V+ A + N ++F
Sbjct: 211 EVLRAVAQAVDIPIIANGGSKNMHCYDDLRKFQMECGADSVMVARAAQINVSIFR----- 265
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY 214
+G L +L+ +YL+LC Y
Sbjct: 266 ----------PEGLLPMDELIEKYLRLCVDY 286
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 63/219 (28%), Positives = 108/219 (49%)
Query: 13 VQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ D + AAR+V + +DIN+GCP + G G+ L+ L+E +
Sbjct: 71 VQLAGRDTHWIAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEAV 130
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
++VPV+ K R+ L + A+ +AG ++ +HGRTR + K RADW AI
Sbjct: 131 VAAVDVPVTLKTRLGWDDTLMNAPDVARRAAEAGVRMVTIHGRTRCQF--YKGRADWAAI 188
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
AV+ A+ +P++ANG++ ++ L+ +G +GV+ P L A A + +
Sbjct: 189 AAVREAVDVPLIANGDITCAHTARQALDRSGADGVMVGRGAQGRPWLLAQIAHALYGTPA 248
Query: 190 EEISKDGNLDQADLLVE-YLKLCEKY--PVPWRMIRSHV 225
E+ + L AD++ Y + + Y + R+ R H+
Sbjct: 249 PEVPQGAEL--ADMVARHYQAMLDFYGRELGLRVARKHL 285
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 54/168 (32%), Positives = 95/168 (56%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ + P+ L AA+ + +DIN+GCP + + G+ L+ V+ +V+ +
Sbjct: 69 VQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K A+++ I
Sbjct: 129 VNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYKGNAEYDTI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 187 KAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 54/168 (32%), Positives = 95/168 (56%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ + P+ L AA+ + +DIN+GCP + + G+ L+ V+ +V+ +
Sbjct: 69 VQIAGSCPDELAFAAKVNADNGAQIIDINMGCPAKKVNKKLAGSALLREPAQVERIVQSV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+++PV+ KIR + ++ I+ AK+ E++G + LAVHGRTR+ D K A+++ I
Sbjct: 129 VNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRN--DFYKGNAEYDTI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KA+K A+ IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 187 KAIKLAISIPVVANGDITSPEKALQVLDHTGADAIMVGRGAQGRPWIF 234
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 54/168 (32%), Positives = 94/168 (55%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+++ AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 69 VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+NVPV+ K R + ++ + A++ ED G LA+HGRTR K A++++I
Sbjct: 129 VNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--YKGEAEYDSI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 187 KAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 54/168 (32%), Positives = 94/168 (55%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+++ AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 69 VQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+NVPV+ K R + ++ + A++ ED G LA+HGRTR K A++++I
Sbjct: 129 VNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACM--YKGEAEYDSI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 187 KAVKAAVSIPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRPWIF 234
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 55/168 (32%), Positives = 88/168 (52%)
Query: 13 VQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ P+ L NAAR VE VD+N GCP + GA L+ + L+ + +
Sbjct: 67 VQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAM 126
Query: 72 --ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 128
A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ + DW A
Sbjct: 127 REAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRAEHIDWQA 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
I ++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 186 IGDIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 58/173 (33%), Positives = 89/173 (51%)
Query: 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E P+ VQ DP + AARR V+ D +DIN+GCP + G+ L+ + LV
Sbjct: 63 EPGPISVQIVGADPREMAEAARRTVDLGADIIDINMGCPAKKVCNVAAGSALLRDEKLVA 122
Query: 66 SLVEKLALNLNVPVSCKIRV-FPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
+++E + + VPV+ KIR + + ++ + K+ E AG L VHGRTR G
Sbjct: 123 NILEAVVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTR--ACGFAGA 180
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A+++ I VK A+ IPV+ANG++ + L TG + V+ P L
Sbjct: 181 AEYSTITEVKKAIGIPVIANGDIDSPGKAEAVLRSTGADAVMIGRGAWGRPWL 233
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 217 (81.4 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 48/159 (30%), Positives = 92/159 (57%)
Query: 24 LNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSC 81
L AA+ V C +DIN+GCP+ + +G G+ L+ +K ++ L NLN +P++C
Sbjct: 116 LEAAKVVCNDICA-LDINMGCPKFFSVQGGMGSALLSKPETIKDILTTLKRNLNGIPITC 174
Query: 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV-KNA-LRIP 139
KIR+ Q+TI +++E G S + VH R E+ + A W+ ++ + NA +P
Sbjct: 175 KIRLLSTDQETIDLLRIIESTGVSAIGVHCRMIPERP--RDPAHWDRLENILSNASFSVP 232
Query: 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
++ANG++ D++K ++T + ++ A +++N ++F+
Sbjct: 233 IIANGDIFEHADIEKIKKQTKVDSIMIARGVVKNVSIFS 271
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 215 (80.7 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 66/232 (28%), Positives = 108/232 (46%)
Query: 4 LPPEDRP-LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP 62
L PE++ +Q N E A+ V +D+N+GCP+ + GA L+
Sbjct: 70 LAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAGIDVNMGCPKPFSIHCGMGAALLTQTE 129
Query: 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 122
+ ++ L VPV+CKIRV + +DT+K + +E S L VHGR RDE+ K
Sbjct: 130 KIVDILTSLKSAAKVPVTCKIRVLDDPEDTLKLVQEIEKCRVSALGVHGRRRDERQPDKC 189
Query: 123 RADWNAIKAVKNALR-IPVLANG---NVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
R D I+ V A++ IPV++NG + D +K T + A L P++F
Sbjct: 190 RID--EIRDVAQAVQSIPVISNGLSDEIEQYSDFEKYQLLTETSSTMIARKALSTPSIFR 247
Query: 179 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLG 230
++G LD+ + + +L+L +Y + M + V ++LG
Sbjct: 248 ---------------REGCLDKYEDIRNFLELACQYDESYTMTKYVVQRILG 284
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 44/130 (33%), Positives = 74/130 (56%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
++R +F Q +D E L AR VE +D+N+GCP++ + +G GA L+ + ++
Sbjct: 81 QNRVVF-QMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 126
++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R+E+ +
Sbjct: 140 ILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCE- 198
Query: 127 NAIKAVKNAL 136
IKA+ + L
Sbjct: 199 -VIKAIADTL 207
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 208 (78.3 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 45/147 (30%), Positives = 80/147 (54%)
Query: 47 IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL 106
+ + G GA L+ + ++ ++ L PV+CKIR+ P+L+DT+ K +E G +
Sbjct: 85 VFQMGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAA 144
Query: 107 LAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCE 162
+AVHGR R+E+ + IKA+ + L IPV+ANG +++ D++ + T
Sbjct: 145 IAVHGRKREERPQHPVSCE--VIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAAS 202
Query: 163 GVLSAESLLENPALFA--GFRTAEWIV 187
V+ A + + NP++F G R E ++
Sbjct: 203 SVMVARAAMWNPSIFLKEGLRPLEEVM 229
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 205 (77.2 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 78/273 (28%), Positives = 122/273 (44%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRV--EPYCDYVDINLGCP-QRIARRGNYGAFL 57
M ++ P +Q DP+ AAR + E D++D+N GCP ++ +RG GA L
Sbjct: 76 MTTFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGG-GAAL 134
Query: 58 MDNLPLVKSLVE---KLALNLNVPVSCKIRV-FPNLQDT-IKYAKMLEDAGCSLLAVHGR 112
L +V + ++PV+ K R+ + T + ++ E G + +A+H R
Sbjct: 135 PFKRRLFGQIVAAAVRATEGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAEGAAAVALHAR 194
Query: 113 TRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171
T ++ ADW I +K +R IPVL NG++ D + TGC+GV+ L
Sbjct: 195 TAAQRYSGT--ADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCL 252
Query: 172 ENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKL 228
P LFA A GS + + AD++ + L + R IR H+
Sbjct: 253 GRPWLFAELSAA--FTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWY 310
Query: 229 LGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 261
L F +R L A + TF+ L L+DRL
Sbjct: 311 L-HGFPAGSALRRAL-AMVK-TFDELDCLLDRL 340
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 209 (78.6 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 65/202 (32%), Positives = 101/202 (50%)
Query: 1 MKNLPPEDRPLF-VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGA 55
+K P ED +F VQ P+ + A R +E D+VDIN+GCP + + G
Sbjct: 353 LKRHPCED--IFGVQLEGAFPDTMTKCAELLNRTIE--VDFVDINVGCPIDLVFKKGGGC 408
Query: 56 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHG 111
LM+ L + +V + L+VP++ K+R +Q+ + A L D G +L+ +HG
Sbjct: 409 ALMNRLAKFQQIVRGMNQVLDVPLTVKLRT--GVQERVNLAHRLLPDLRDWGAALVTLHG 466
Query: 112 RTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170
R+R+++ K ADW I+ A R +P+ NG+V ED + L+ TG GV+ A
Sbjct: 467 RSREQRYTKL--ADWQYIEQCVAAARPMPLFGNGDVLSYEDANRALQ-TGVAGVMIARGA 523
Query: 171 LENPALFAGFRTAE-WIVGSEE 191
L P LF + W + S E
Sbjct: 524 LLKPWLFTEIKEQRHWDISSSE 545
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 198 (74.8 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 52/176 (29%), Positives = 85/176 (48%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ VQ DP + NA R E +D+N GCP ++ + GA L+ + L+
Sbjct: 60 PSGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-K 120
+V+ A+ ++PVS KIR+ + + +D + + A L VH RT+ G K
Sbjct: 120 YQVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYK 177
Query: 121 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W+ I ++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 178 ASEIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 198 (74.8 bits), Expect = 6.2e-15, P = 6.2e-15
Identities = 52/176 (29%), Positives = 85/176 (48%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ VQ DP + NA R E +D+N GCP ++ + GA L+ + L+
Sbjct: 60 PSGVPVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-K 120
+V+ A+ ++PVS KIR+ + + +D + + A L VH RT+ G K
Sbjct: 120 YQVVKACRDAVPAHIPVSAKIRLGWEDPEDCFEIVDAVAQAKADELTVHARTK--AGGYK 177
Query: 121 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W+ I ++ IP++ANG V + D Q C++ TG + ++ L P L
Sbjct: 178 ASEIKWHYIDQIRQKCSIPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVPNL 233
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 200 (75.5 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 54/171 (31%), Positives = 89/171 (52%)
Query: 27 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86
+R VE D+VDIN+GCP + + G LM+ + +V + L+VP++ KIR
Sbjct: 382 SRTVE--VDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRT- 438
Query: 87 PNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK-AVKNALRIPVL 141
+Q+ + A L D G +L+ +HGR+R+++ K ADW I+ V+ A +P+
Sbjct: 439 -GVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKL--ADWQYIEECVQAASPMPLF 495
Query: 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSEE 191
NG++ ED + ++ TG G++ A L P LF + W + S E
Sbjct: 496 GNGDILSFEDANRAMQ-TGVTGIMIARGALLKPWLFTEIKEQRHWDISSSE 545
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 199 (75.1 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 62/202 (30%), Positives = 100/202 (49%)
Query: 1 MKNLPPEDRPLF-VQFCANDPEILLNAA----RRVEPYCDYVDINLGCPQRIARRGNYGA 55
+K P ED +F VQ P+ + A R +E D+VDIN+GCP + + G
Sbjct: 355 LKRHPCED--VFGVQLEGAFPDTMTKCAELLNRTIE--VDFVDINVGCPIDLVYKKGGGC 410
Query: 56 FLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHG 111
LM+ + +V + L+VP++ KIR +Q+ + A L D G +L+ +HG
Sbjct: 411 ALMNRSAKFQQIVRGMNQVLDVPLTVKIRT--GVQERVNLAHRLLPELRDWGAALVTLHG 468
Query: 112 RTRDEKDGKKFRADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170
R+R+++ K ADW I+ V A +P+ NG++ ED + ++ TG G++ A
Sbjct: 469 RSREQRYTKL--ADWQYIEQCVTAASPMPLFGNGDILSYEDANRAMK-TGVAGIMIARGA 525
Query: 171 LENPALFAGFRTAE-WIVGSEE 191
L P LF + W + S E
Sbjct: 526 LLKPWLFTEIKEQRHWDISSSE 547
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 196 (74.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 56/175 (32%), Positives = 90/175 (51%)
Query: 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82
LLN R +E D+VDIN+GCP + + G LM+ + +V + L+VP++ K
Sbjct: 375 LLN--RTIE--VDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGMNQVLDVPLTVK 430
Query: 83 IRVFPNLQDTIKYAKML----EDAGCSLLAVHGRTRDEKDGKKFRADWNAIK-AVKNALR 137
IR +Q+ + A L + G +L+ +HGR+R+++ K ADW I+ V A
Sbjct: 431 IRT--GVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTKL--ADWQYIEQCVTAASP 486
Query: 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSEE 191
+P+ NG++ ED + ++ TG GV+ A L P LF + W + S E
Sbjct: 487 MPLFGNGDILSYEDANRAMQ-TGVAGVMIARGALLKPWLFTEIKEQRHWDISSSE 540
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 194 (73.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 52/161 (32%), Positives = 79/161 (49%)
Query: 35 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR--VFPNLQDT 92
D+VDIN GCP + + G LM + +V + L+VP++ KIR V N
Sbjct: 398 DFVDINSGCPIDLVYKKGGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIA 457
Query: 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPVLANGNVRHMED 151
K ++ G SL+ +HGR+R+++ K ADW+ I A +P+ NG++ ED
Sbjct: 458 HKLIPEMKKWGVSLITLHGRSREQRYTKL--ADWDYINTCAQLAAPVPLFGNGDILSYED 515
Query: 152 VQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSEE 191
K ETG G++ A L P LF + + W + S E
Sbjct: 516 AMKA-RETGVSGIMVARGALIKPWLFTEIKESRHWDISSTE 555
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 191 (72.3 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNL 61
P E L +Q ++DP++ ++AAR+V D +D+N GCP+ + GA L+ D L
Sbjct: 78 PVETGRLILQLGSSDPQLAVDAARKVIDDVDGIDLNCGCPKNFSTHSGMGAELLKTPDKL 137
Query: 62 -PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 120
++ +LVEK+ + +SCKIR+F N + + + G S L +H RT ++
Sbjct: 138 CSILINLVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIHCRTPIMRN-- 195
Query: 121 KFRAD--WNAIKAVKNALR---IPVLANGNVRHMEDV---QKCLEETGCEGVLS---AES 169
R D WN + + ++ + ++ NGN++++ D+ Q L + G G LS AE+
Sbjct: 196 --RQDPVWNFLPKLIPIIQTAGVNLVINGNMQNVADLKNLQSALNDNG-GGKLSIMIAEA 252
Query: 170 LLENPALFA 178
NP++F+
Sbjct: 253 AEANPSVFS 261
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 52/198 (26%), Positives = 97/198 (48%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLM 58
+K P ED+ VQ C + + + A +E D+VDIN GCP + GA LM
Sbjct: 372 LKRHPCEDK-FGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALM 430
Query: 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG----CSLLAVHGRTR 114
+ V+ L+ ++ +L+ P + KIR+ + +D K++ G C++ +HGR+R
Sbjct: 431 ERPKKVEQLLRGISSSLSCPTTIKIRIGKS-EDAPTAHKLIPSLGEWGACAV-TLHGRSR 488
Query: 115 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
++ + A+W+ +K IP++ NG++ + +DV + + ++ A L P
Sbjct: 489 AQRYSRL--ANWDYVKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGALIKP 546
Query: 175 ALFAGFRTA-EWIVGSEE 191
+F + EW + + E
Sbjct: 547 WIFTEIKEKREWDISASE 564
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 190 (71.9 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 50/180 (27%), Positives = 87/180 (48%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN---- 60
P E L Q + PE+ + AA+ V +D+N GCP+ + GA L+ N
Sbjct: 78 PLEANRLIFQLGSASPELAVEAAKLVANDVAGIDLNCGCPKHFSVHAGMGAGLLKNQDRL 137
Query: 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 120
+ ++ +LV ++ + +SCKIR+ +DT+K + + D G + VH RT ++ +
Sbjct: 138 VSILDALVNEIGKPYKISISCKIRLLETKEDTLKLVERICDTGVRAITVHCRTTPMRNTE 197
Query: 121 KFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
AD + + + R + +L NG+V D +E+ G +GVL A + N + F
Sbjct: 198 P--ADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKYGVDGVLIARAAERNVSCF 255
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 191 (72.3 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 59/200 (29%), Positives = 97/200 (48%)
Query: 1 MKNLPPEDRPLF-VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFL 57
+K P ED +F VQ P+ + A + D +VDIN+GCP + + G L
Sbjct: 340 LKRHPCED--IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCAL 397
Query: 58 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKML----EDAGCSLLAVHGRT 113
M+ + +V + L+VP++ K+R +Q+ + A L D G +L+ +HGR+
Sbjct: 398 MNRSAKFQQIVRGVNGVLDVPLTVKMRT--GVQERVSLAHRLLPELRDWGVALVTLHGRS 455
Query: 114 RDEKDGKKFRADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
R+++ + ADW I+ K A +P+ NG++ ED C +TG G++ A L
Sbjct: 456 REQRYTRL--ADWPYIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALL 512
Query: 173 NPALFAGFRTAE-WIVGSEE 191
P LF + W + S E
Sbjct: 513 KPWLFTEIKEQRHWDISSSE 532
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 189 (71.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 58/200 (29%), Positives = 99/200 (49%)
Query: 1 MKNLPPEDRPLF-VQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFL 57
+K P ED +F VQ P+ + A + D +VDIN+GCP + + G L
Sbjct: 343 LKRHPCED--IFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCAL 400
Query: 58 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA-KMLEDA---GCSLLAVHGRT 113
M+ + +V + L+VP++ K+R +Q+ + A ++L + G +L+ +HGR+
Sbjct: 401 MNRSAKFQQIVRGMNEVLDVPLTVKMRT--GVQERVSLAHRLLPELRNWGVALVTLHGRS 458
Query: 114 RDEKDGKKFRADWNAIK-AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
R+++ + ADW I+ K A +P+ NG++ ED C +TG G++ A L
Sbjct: 459 REQRYTRL--ADWPYIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALL 515
Query: 173 NPALFAGFRTAE-WIVGSEE 191
P LF + W + S E
Sbjct: 516 KPWLFTEIKEQRHWDISSSE 535
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 184 (69.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 67/253 (26%), Positives = 112/253 (44%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PE+ PL +Q +DP+ L AR E D +++N+GCP G +GA L+ LV
Sbjct: 80 PEEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELV 139
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIK----YAKMLEDAGCSLLAVHGRTRDEK--D 118
V ++ +N+PVS K R + QD+ + + K + +AGC + +H R K
Sbjct: 140 ADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLS 199
Query: 119 GKKFRA----DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ R + + +K + ++ NG ++ +E + L E +GV+ N
Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREV--DGVMIGREAYAN 257
Query: 174 PALFAGFRTAEWIVGSEEIS--KDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKL 228
P A F V S ++ K L +L+ YL K VP + H++ L
Sbjct: 258 PLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGL 317
Query: 229 LGEWFRIQPGVRE 241
F+ QPG ++
Sbjct: 318 ----FQGQPGAKK 326
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 184 (69.8 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 67/253 (26%), Positives = 112/253 (44%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PE+ PL +Q +DP+ L AR E D +++N+GCP G +GA L+ LV
Sbjct: 80 PEEHPLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELV 139
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIK----YAKMLEDAGCSLLAVHGRTRDEK--D 118
V ++ +N+PVS K R + QD+ + + K + +AGC + +H R K
Sbjct: 140 ADCVAAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLS 199
Query: 119 GKKFRA----DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ R + + +K + ++ NG ++ +E + L E +GV+ N
Sbjct: 200 PAENRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREV--DGVMIGREAYAN 257
Query: 174 PALFAGFRTAEWIVGSEEIS--KDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHVHKL 228
P A F V S ++ K L +L+ YL K VP + H++ L
Sbjct: 258 PLFCAAFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGL 317
Query: 229 LGEWFRIQPGVRE 241
F+ QPG ++
Sbjct: 318 ----FQGQPGAKK 326
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 184 (69.8 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 48/185 (25%), Positives = 92/185 (49%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P + PL +Q +DPE L A+ E D V++N+GCP + G +GA LM V
Sbjct: 79 PAEHPLAIQLGGSDPEALAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERV 138
Query: 65 KSLVEKLALNLNVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTR-----D 115
V + ++VPV+ K R+ + +D + + ++ +AGC VH R
Sbjct: 139 ADCVRAMCEAVSVPVTVKTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLS 198
Query: 116 EKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
K+ ++ ++ ++ +K+ L + ++ NG ++ +++ ++ L + C+GV+ + N
Sbjct: 199 PKENRQTPPLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHL--SWCDGVMIGRAAYHN 256
Query: 174 PALFA 178
P L A
Sbjct: 257 PYLLA 261
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 188 (71.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 35 DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR--VFPNLQDT 92
D+VDIN+GCP + + G LM + +V + L+VP++ KIR V +
Sbjct: 368 DFVDINVGCPIDLVYKKGGGCALMTRSNKFEQIVRGMNSVLDVPLTVKIRTGVQEKMNVA 427
Query: 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI-KAVKNALRIPVLANGNVRHMED 151
K + + G S++ +HGR+R+++ + ADW+ I + K A +P+ NG++ ED
Sbjct: 428 HKIIPKIREWGASMVTLHGRSREQRYTRV--ADWDYIAECAKIASPMPLFGNGDILSYED 485
Query: 152 VQKCLEETGCEGVLSAESLLENPALFAGFRTAE-WIVGSEE 191
+ ++ TG G++ A L P LF + W + S E
Sbjct: 486 ANQAMQ-TGVSGIMIARGALIKPWLFTEIKEQRHWDISSSE 525
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 168 (64.2 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 59/248 (23%), Positives = 111/248 (44%)
Query: 7 EDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ P+ +QF ++P+ L + A+ E D +++N+GCP + G +GA LM LV
Sbjct: 56 EEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVA 115
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKY-----AKMLEDAGCSLLAVHGRTR-----D 115
V + +++PV+ K R+ + QD+ ++ A + E GC +H R
Sbjct: 116 ECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLS 175
Query: 116 EKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
K+ ++ D+ +K + + NG V+ +E+ + L+ +GV+ +N
Sbjct: 176 PKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHL--DGVMIGREAYQN 233
Query: 174 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 233
P L A + I G E K ++ ++ E + E+ + +LG F
Sbjct: 234 PYLLA--EVDQQIFGLETPVKK----RSQVIHEMMPYIERELSQGTHLGHMTRHMLG-LF 286
Query: 234 RIQPGVRE 241
+ PG R+
Sbjct: 287 QNMPGARQ 294
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 168 (64.2 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 59/248 (23%), Positives = 111/248 (44%)
Query: 7 EDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ P+ +QF ++P+ L + A+ E D +++N+GCP + G +GA LM LV
Sbjct: 56 EEHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVA 115
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKY-----AKMLEDAGCSLLAVHGRTR-----D 115
V + +++PV+ K R+ + QD+ ++ A + E GC +H R
Sbjct: 116 ECVAAMRAVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLS 175
Query: 116 EKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
K+ ++ D+ +K + + NG V+ +E+ + L+ +GV+ +N
Sbjct: 176 PKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHL--DGVMIGREAYQN 233
Query: 174 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 233
P L A + I G E K ++ ++ E + E+ + +LG F
Sbjct: 234 PYLLA--EVDQQIFGLETPVKK----RSQVIHEMMPYIERELSQGTHLGHMTRHMLG-LF 286
Query: 234 RIQPGVRE 241
+ PG R+
Sbjct: 287 QNMPGARQ 294
>FB|FBgn0032819 [details] [associations]
symbol:CG10463 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270
GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 EMBL:AY119278 ProteinModelPortal:Q8MRT5
SMR:Q8MRT5 STRING:Q8MRT5 PaxDb:Q8MRT5 PRIDE:Q8MRT5
FlyBase:FBgn0032819 InParanoid:Q8MRT5 OrthoDB:EOG49CNPV
ArrayExpress:Q8MRT5 Bgee:Q8MRT5 Uniprot:Q8MRT5
Length = 604
Score = 171 (65.3 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 47/181 (25%), Positives = 91/181 (50%)
Query: 13 VQFCANDPEILLNAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 70
VQ C N+P +L AA+ + D++D+N+GCP + + G+ LM +++ V
Sbjct: 316 VQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNILELTVRS 375
Query: 71 LA-LNLNVPVSCKIR--VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
A L+ +P + K+R ++ + + ++E+ G S + +HGR+R+++ K A+W
Sbjct: 376 CAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTK--HANWA 433
Query: 128 AIK-AVKNALRIPVLANGNVRHMED-VQKCLEETGCEGVLSAESLLENPALFAGFRTAE- 184
I+ A R+PV+ NG++ ED +++ V+ L P +F + +
Sbjct: 434 YIEECAAKAKRMPVIGNGDILSYEDYMERRTLAPHVSSVMIGRGALIKPWIFQEIKEKQA 493
Query: 185 W 185
W
Sbjct: 494 W 494
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 164 (62.8 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 48/182 (26%), Positives = 84/182 (46%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ PL +Q ++P L AAR E Y D V++N GCP + G +GA LM LV
Sbjct: 60 EHPLVLQLGGSEPGKLAEAARIAEGYGYDEVNLNCGCPSERVQSGAFGACLMAEPDLVAD 119
Query: 67 LVEKLALNLNVPVSCKIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----DEK 117
V + +++PV+ K R+ P + + + + AGCS+ VH R K
Sbjct: 120 CVAAMRAAVSIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHARKAWLKGLSPK 179
Query: 118 DGKKFRA-DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGC-EGVLSAESLLENP 174
+ ++ D+ + +K A + ++ NG + + +C + G +GV+ + + P
Sbjct: 180 ENREVPPLDYGLVAELKTARPDLTIILNGGIA---TIDQCRDHIGVFDGVMLGRAAYQTP 236
Query: 175 AL 176
L
Sbjct: 237 GL 238
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 164 (62.8 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 53/183 (28%), Positives = 91/183 (49%)
Query: 7 EDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IARRGNYGAFLMDNLPL 63
+++P+ QF N PE +A+ E D VDIN+GCP R ++ + GA L+ N L
Sbjct: 66 QEKPIVAQFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALITNPSL 125
Query: 64 VKSLVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
K +V+ K ALN PVS K R+ + + ++ ++ ++ + L +H RT+ K+
Sbjct: 126 AKEIVKITKEALNFEKPVSVKTRIGFDKIEIDEWIPLILESEPACLTLHLRTK--KELSL 183
Query: 122 FRADW-----NAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
A W + + ++N + L NG+V E + + G +GV+ ++ NP
Sbjct: 184 VPAHWEHQVLDRVVELRNQISPNTLLVGNGDVETYEQGIDYINQFGIDGVMIGRAVYGNP 243
Query: 175 ALF 177
LF
Sbjct: 244 WLF 246
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 160 (61.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 52/180 (28%), Positives = 86/180 (47%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPL 63
E L Q + P + AA +V +DIN GCP+ + G+ L+ D L L
Sbjct: 81 ESSKLIFQIGSASPALATQAALKVINDVSGIDINAGCPKHFSIHSGMGSALLRTPDTLCL 140
Query: 64 V-KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 122
+ K LV+ + + P+S KIR+ QDT++ K L G + L VH R + ++ ++
Sbjct: 141 ILKELVKNVGNPHSKPISVKIRLLDTKQDTLQLVKRLCATGITNLTVHCRKTEMRNREQP 200
Query: 123 RADWNA-IKAVKNALRIPVLANGNVR---HMEDVQ-KCLEETGCEGVLSAESLLENPALF 177
D+ A I + A + ++ NG +R H D+Q + T G++ AE +P +F
Sbjct: 201 ITDYIAEIYEICQANNVSLIVNGAIRDRSHFHDLQANHWKNTNIGGMI-AECAERDPTVF 259
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 158 (60.7 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 48/202 (23%), Positives = 92/202 (45%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ P+ +Q +DP L A+ E D +++N+GCP + G +GA LM N LV
Sbjct: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYA----KMLEDAG-CSLLAVHGRTR-----D 115
V+ + +++PV+ K R+ + QD+ ++ + G C + +H R
Sbjct: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181
Query: 116 EKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
K+ ++ D+ + +K + + NG ++ +E+ + L+ +GV+ +N
Sbjct: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239
Query: 174 PALFAGFRTAEWIVGSEEISKD 195
P + A I GS + D
Sbjct: 240 PGILAAVDRE--IFGSSDTDAD 259
>TIGR_CMR|SPO_2374 [details] [associations]
symbol:SPO_2374 "tRNA-dihydrouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_167596.1 ProteinModelPortal:Q5LQV9 GeneID:3194172
KEGG:sil:SPO2374 PATRIC:23378123 Uniprot:Q5LQV9
Length = 344
Score = 156 (60.0 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 49/183 (26%), Positives = 86/183 (46%)
Query: 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ P+ +Q +DPE L AAR E D +++N GCP + G +GA LM + LV
Sbjct: 63 EEHPVALQLGGSDPEELAQAARLGAEAGYDEINLNCGCPSDRVQSGTFGAVLMKHPGLVA 122
Query: 66 SLVEKL--ALNLNVPVSCKIRVFPNLQDTI--KYAKMLEDAGCSLLAVHGRTR-----DE 116
V + A+++ V V C+I V +T+ ++ + + AGC + +H R
Sbjct: 123 DCVTAMREAVDVEVTVKCRIGVDDQDPETVLPEFLEQIAGAGCQRVIIHARKAWLQGLSP 182
Query: 117 KDGKKFRA-DWNAIKAVKNALRIP---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
K+ + D++ + +K R P + NG + + + L+ G +GV+ +
Sbjct: 183 KENRDIPPLDYDLVHRMK--ARFPGMHISINGGIDTLAAARAHLD-AGLDGVMIGRAAYH 239
Query: 173 NPA 175
PA
Sbjct: 240 QPA 242
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 155 (59.6 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 53/213 (24%), Positives = 96/213 (45%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ PL +Q +D + + A+ E Y D V+IN+GCP + G +GA LM LV
Sbjct: 70 EHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQ 129
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAK-MLED---AGCSLLAVHGRTR-----DEK 117
V ++ N+PV+ K R+ + D+ ++ +E+ A C +H R K
Sbjct: 130 CVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPK 189
Query: 118 DGKKFRA-DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175
+ D++ + +KN + + V NG ++ + + L+ +GV+ + +P
Sbjct: 190 QNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHI--DGVMIGREIYNSPY 247
Query: 176 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 208
+ A I S+ I K + DL+V Y+
Sbjct: 248 MLADADNE--IYQSDTI-KLSRSEVIDLMVPYI 277
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 155 (59.6 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 49/186 (26%), Positives = 86/186 (46%)
Query: 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ PL +Q ++P L A+ E D V++N+GCP + G +GA LM LV
Sbjct: 65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA----GCSLLAVHGRTR-----DE 116
V+ + +++PV+ K R+ + QD+ ++ D GC +H R
Sbjct: 125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184
Query: 117 KDGKKFRA-DWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
K+ ++ D++ + +K AL I + NG + +E Q L+ +GV+ +
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISI--NGGITSLEQAQTHLQHL--DGVMVGREAYQ 240
Query: 173 NPALFA 178
NP + A
Sbjct: 241 NPYMLA 246
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 155 (59.6 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 53/213 (24%), Positives = 96/213 (45%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ PL +Q +D + + A+ E Y D V+IN+GCP + G +GA LM LV
Sbjct: 70 EHPLVLQLGGSDVKAMTECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQ 129
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAK-MLED---AGCSLLAVHGRTR-----DEK 117
V ++ N+PV+ K R+ + D+ ++ +E+ A C +H R K
Sbjct: 130 CVNQMQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPK 189
Query: 118 DGKKFRA-DWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175
+ D++ + +KN + + V NG ++ + + L+ +GV+ + +P
Sbjct: 190 QNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQHI--DGVMIGREIYNSPY 247
Query: 176 LFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 208
+ A I S+ I K + DL+V Y+
Sbjct: 248 MLADADNE--IYQSDTI-KLSRSEVIDLMVPYI 277
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 155 (59.6 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 49/186 (26%), Positives = 86/186 (46%)
Query: 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E+ PL +Q ++P L A+ E D V++N+GCP + G +GA LM LV
Sbjct: 65 EEHPLALQLGGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVA 124
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA----GCSLLAVHGRTR-----DE 116
V+ + +++PV+ K R+ + QD+ ++ D GC +H R
Sbjct: 125 ECVDAMKQVVDIPVTVKTRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSP 184
Query: 117 KDGKKFRA-DWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
K+ ++ D++ + +K AL I + NG + +E Q L+ +GV+ +
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISI--NGGITSLEQAQTHLQHL--DGVMVGREAYQ 240
Query: 173 NPALFA 178
NP + A
Sbjct: 241 NPYMLA 246
>ASPGD|ASPL0000038251 [details] [associations]
symbol:AN2967 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000195580
KO:K05543 OrthoDB:EOG4PG98M RefSeq:XP_660571.1
ProteinModelPortal:Q5B913 STRING:Q5B913
EnsemblFungi:CADANIAT00010113 GeneID:2873785 KEGG:ani:AN2967.2
OMA:KEMIMHY Uniprot:Q5B913
Length = 437
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 52/211 (24%), Positives = 95/211 (45%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNL-P 62
E L Q +PE+ + A + V + +D+N GCP+ + G GA L+ D L
Sbjct: 98 EKGKLIFQMGTANPELAVQAGKLVAADVNGIDVNSGCPKPFSTSGGMGAALLRTPDKLVS 157
Query: 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK- 121
++++LV+++ + +S KIR+ + T L G + L +H RT + ++
Sbjct: 158 ILEALVKEVGEPYQIGISVKIRLLETPELTESLVSRLVRTGITGLTIHCRTTPMRPRERA 217
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
R I + + + + NG+V ++ ++E G +G + A + N + F
Sbjct: 218 IRDQLRMIVSTCHNAGVACIMNGDVTSRDEALALMQEYGADGAMIATAAEANSSCFR--- 274
Query: 182 TAEWIVGSEEISKDGNLDQ-ADLLVEYLKLC 211
SE DG L +++ EY+KLC
Sbjct: 275 -------SEA---DGGLAPWREVVHEYVKLC 295
>UNIPROTKB|F8WEL2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC004839 EMBL:AC002381 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HGNC:HGNC:21517 IPI:IPI00925668
ProteinModelPortal:F8WEL2 SMR:F8WEL2 Ensembl:ENST00000443233
ArrayExpress:F8WEL2 Bgee:F8WEL2 Uniprot:F8WEL2
Length = 119
Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQR 46
D PL VQF AND +L +AAR V PY + +DIN GCPQR
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQR 119
>UNIPROTKB|I3L4Y9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 GO:GO:0005739
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000575677 Bgee:I3L4Y9 Uniprot:I3L4Y9
Length = 158
Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
++R +F Q +D E L AR VE +D+N+GCP++ + +G GA L+ + ++
Sbjct: 81 QNRVVF-QMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSDPDKIEK 139
Query: 67 LVEKLALNLNVPVSCKIRV 85
++ L PV+CKIR+
Sbjct: 140 ILSTLVKGTRRPVTCKIRI 158
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 49/187 (26%), Positives = 83/187 (44%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
+ PL +Q + L AR E D V++N+GCP + GA LM + LV
Sbjct: 71 EHPLALQLGGSTAAGLAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVAD 130
Query: 67 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE------DAGCSLLAVHGRT------- 113
V+ + + +PV+ K R+ N +D+ YA++ + DAGC VH R
Sbjct: 131 CVKAMRDAVGIPVTVKHRIGINGRDS--YAELCDFVGTVHDAGCQSFTVHARIAILEGLS 188
Query: 114 -RDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171
++ +D R D + +K + ++ NG ++ +E + L+ +GV+
Sbjct: 189 PKENRDIPPLRYD--VVAQLKTDFPELEIVLNGGIKTLEQCSEHLQTF--DGVMLGREAY 244
Query: 172 ENPALFA 178
NP L A
Sbjct: 245 HNPYLLA 251
>GENEDB_PFALCIPARUM|PFI0920c [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 133 (51.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVK 65
+ P+ Q D + AA VE D ++IN+GCP ++A +G +GA LM N V+
Sbjct: 253 EHPIVCQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVR 312
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGR 112
++V ++ + +PV+ KIR + D+ + K + GC+ VH R
Sbjct: 313 NIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>UNIPROTKB|Q8I2W5 [details] [associations]
symbol:PFI0920c "Dihydrouridine synthase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 GO:GO:0020011 EMBL:AL844508 RefSeq:XP_001352059.1
ProteinModelPortal:Q8I2W5 EnsemblProtists:PFI0920c:mRNA
GeneID:813464 KEGG:pfa:PFI0920c EuPathDB:PlasmoDB:PF3D7_0918800
HOGENOM:HOG000282922 ProtClustDB:CLSZ2432702 Uniprot:Q8I2W5
Length = 577
Score = 133 (51.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVK 65
+ P+ Q D + AA VE D ++IN+GCP ++A +G +GA LM N V+
Sbjct: 253 EHPIVCQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVR 312
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM----LEDAGCSLLAVHGR 112
++V ++ + +PV+ KIR + D+ + K + GC+ VH R
Sbjct: 313 NIVYEIKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVGCNHFIVHAR 363
>TAIR|locus:2087408 [details] [associations]
symbol:AT3G63510 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016556 "mRNA modification" evidence=RCA]
[GO:0019243 "methylglyoxal catabolic process to D-lactate"
evidence=RCA] InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:3.20.20.70
GO:GO:0050660 UniGene:At.43820 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 EMBL:BT000879
IPI:IPI00546722 RefSeq:NP_567149.2 ProteinModelPortal:Q8H128
SMR:Q8H128 EnsemblPlants:AT3G63510.1 GeneID:825526
KEGG:ath:AT3G63510 TAIR:At3g63510 InParanoid:Q8H128 OMA:SPTRHFI
PhylomeDB:Q8H128 ProtClustDB:CLSN2686569 ArrayExpress:Q8H128
Genevestigator:Q8H128 Uniprot:Q8H128
Length = 419
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 55/212 (25%), Positives = 90/212 (42%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQ-RIARRGNYGAFLMDNLPL 63
P+ P+ +Q ++ E L AA+ + Y D +++N GCP ++A G +G LM L
Sbjct: 105 PQQHPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKL 164
Query: 64 VKSLVEKLALNLNVPVSCKIRV-------FPNLQDTIKYAKMLEDAGCSLLAVHGRTR-- 114
V + +A N NVPV+ K R+ + L D I L + VH R
Sbjct: 165 VGEAMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFI--VHSRKALL 222
Query: 115 ---DEKDGKKFRA-DWNAIKA-VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169
D ++ + A V++ + NG + + V L+E G GV+ +
Sbjct: 223 GGISPADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKE-GAHGVMVGRA 281
Query: 170 LLENPALFAG-FRTAEWIVGSEEISKDGNLDQ 200
NP G TA + V S +++ L+Q
Sbjct: 282 AYNNPWQTLGQVDTAVYGVPSSGLTRRQVLEQ 313
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 45/179 (25%), Positives = 81/179 (45%)
Query: 7 EDRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 64
+++P+ ++PE + E +DIN+GCP +A RG G+ L+ +
Sbjct: 68 DEQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPDVA 126
Query: 65 KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
L++ +PVS K R+ F L + + + + L++H RTR+E +
Sbjct: 127 AELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIHLRTREEMS--QVD 183
Query: 124 ADWNAIKAVKNAL-RI-P---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
A W I +K RI P + NG++ + + E+ G +GV+ + +NP F
Sbjct: 184 AHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPFAF 242
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 45/179 (25%), Positives = 81/179 (45%)
Query: 7 EDRPLFVQFCANDPEILLNAA-RRVEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPLV 64
+++P+ ++PE + E +DIN+GCP +A RG G+ L+ +
Sbjct: 68 DEQPMVAHIWGDNPEYFRQMSIGMAELGFKGIDINMGCPVPNVASRGK-GSGLILRPDVA 126
Query: 65 KSLVEKLALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
L++ +PVS K R+ F L + + + + L++H RTR+E +
Sbjct: 127 AELIQAAKAG-GLPVSVKTRLGFKELSEWEDWLTHIFKQDIANLSIHLRTREEMS--QVD 183
Query: 124 ADWNAIKAVKNAL-RI-P---VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
A W I +K RI P + NG++ + + E+ G +GV+ + +NP F
Sbjct: 184 AHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKYGIDGVMIGRGIFKNPFAF 242
>SGD|S000004393 [details] [associations]
symbol:DUS3 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS;IMP] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 SGD:S000004393 GO:GO:0005634 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006945 EMBL:U19729 EMBL:Z18944 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
GeneTree:ENSGT00550000075134 OrthoDB:EOG4M950K OMA:PWIFEEV
PIR:S55957 RefSeq:NP_013505.4 RefSeq:NP_013508.3
ProteinModelPortal:Q06053 SMR:Q06053 DIP:DIP-4469N MINT:MINT-473573
STRING:Q06053 PaxDb:Q06053 PeptideAtlas:Q06053 EnsemblFungi:YLR401C
GeneID:851117 GeneID:851120 KEGG:sce:YLR401C KEGG:sce:YLR404W
BioCyc:MetaCyc:MONOMER-16678 NextBio:967836 Genevestigator:Q06053
GermOnline:YLR401C Uniprot:Q06053
Length = 668
Score = 110 (43.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 31/127 (24%), Positives = 63/127 (49%)
Query: 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN-LPLVKSLVEKLALNL 75
A E L N+ + +++N GCP + R G+ L+DN +++ L ++
Sbjct: 364 AKAAEALANSVSEISE----INLNSGCPIDLLYRQGSGSALLDNPARMIRCLNAMNYVSK 419
Query: 76 NVPVSCKIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 130
++P++ KIR P + +K +++ + + + +HGR+R ++ K ADW+ +
Sbjct: 420 DIPITVKIRTGTKEGHPIAEGLVK--RLVNETDVAAITLHGRSRQQRYTKS--ADWDYVS 475
Query: 131 AVKNALR 137
V + LR
Sbjct: 476 QVADTLR 482
Score = 51 (23.0 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 137 RIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKD 195
RI + NG+V + ED + L + V+ A L P +F + +++ + D
Sbjct: 503 RIQFVGNGDVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLDKTSTERLD 562
Query: 196 GNLDQADLLVEY 207
D A +E+
Sbjct: 563 ILRDYAQFSMEH 574
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 50/194 (25%), Positives = 92/194 (47%)
Query: 37 VDINLGCPQRIARRGNYGAFLMDN-LPLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIK 94
+++N GCP + + G+ L+D L++ L A + ++PV+ KIR ++T
Sbjct: 332 LNLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKEGKNTAV 391
Query: 95 --YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK----AVKN-----------ALR 137
+++LE+ + + +HGR+R ++ K+ ADWN I VKN R
Sbjct: 392 NLVSRVLEEGNAAAITLHGRSRQQRYSKE--ADWNYIAEVGTVVKNWNEQQKEDKEGRDR 449
Query: 138 IPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKD 195
PV + NG+V ED + + G + V+ A L P +F E + + + K
Sbjct: 450 DPVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIF------EEVEAQQYLDKS 503
Query: 196 GNLDQADLLVEYLK 209
+ ++ D+L ++ K
Sbjct: 504 SS-ERLDILGKFAK 516
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 50/194 (25%), Positives = 92/194 (47%)
Query: 37 VDINLGCPQRIARRGNYGAFLMDN-LPLVKSLVEKLALNLNVPVSCKIRV-FPNLQDTIK 94
+++N GCP + + G+ L+D L++ L A + ++PV+ KIR ++T
Sbjct: 332 LNLNCGCPIDLLYKQGQGSALLDQPSKLLRILSGMNASSGDIPVTVKIRTGIKEGKNTAV 391
Query: 95 --YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK----AVKN-----------ALR 137
+++LE+ + + +HGR+R ++ K+ ADWN I VKN R
Sbjct: 392 NLVSRVLEEGNAAAITLHGRSRQQRYSKE--ADWNYIAEVGTVVKNWNEQQKEDKEGRDR 449
Query: 138 IPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKD 195
PV + NG+V ED + + G + V+ A L P +F E + + + K
Sbjct: 450 DPVYFVGNGDVYSHEDWYEHVNTDGIDSVMVARGALIKPWIF------EEVEAQQYLDKS 503
Query: 196 GNLDQADLLVEYLK 209
+ ++ D+L ++ K
Sbjct: 504 SS-ERLDILGKFAK 516
>UNIPROTKB|A4RLF4 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 GO:GO:0005634
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:CM001232 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
OrthoDB:EOG4M950K RefSeq:XP_003714097.1 ProteinModelPortal:A4RLF4
STRING:A4RLF4 EnsemblFungi:MGG_01205T0 GeneID:2679761
KEGG:mgr:MGG_01205 Uniprot:A4RLF4
Length = 739
Score = 114 (45.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 32 PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL-ALNLNVPVSCKIRV----- 85
P+ +D+N GCP + + G+ L++ ++ ++ + A++ VP++CK+R+
Sbjct: 431 PHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVPITCKLRIGVKEN 490
Query: 86 FP----NLQDTI----KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
P N++ + + L GC+ + +HGRTR ++ K ADW I
Sbjct: 491 HPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKP--ADWGYI 540
Score = 43 (20.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
L NG+ D K ++E+ + V+ L P +F +++
Sbjct: 578 LGNGDCYSHADYYKAIDESHVDTVMIGRGALIKPWVFEEIAAGQYL 623
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.140 0.428 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 287 274 0.00078 115 3 11 22 0.47 33
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 120
No. of states in DFA: 606 (64 KB)
Total size of DFA: 214 KB (2119 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.97u 0.10s 24.07t Elapsed: 00:00:01
Total cpu time: 23.99u 0.10s 24.09t Elapsed: 00:00:01
Start: Sat May 11 09:31:03 2013 End: Sat May 11 09:31:04 2013
WARNINGS ISSUED: 1