BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023070
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With
Flavin
Length = 318
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
P +R + VQ ++P L AAR + ++D+N GCP R + G L+ +L +
Sbjct: 56 PHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFR 115
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+V +L +++ S K R+ + + ++L + G + +H RT + RA+
Sbjct: 116 YIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTG--RAE 173
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
W A+ ++ RIP +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 174 WKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 223
>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 17/182 (9%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYC-DYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PE+ P+ +Q +DP+ L AAR E + D +++NLGCP A+ G YGA L+ +L V
Sbjct: 55 PEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARV 114
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIK----YAKMLEDAGCSLLAVHGR-------T 113
+ +++ + + VPV+ K+R+ ++T + + + +AG + VH R T
Sbjct: 115 REILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALST 174
Query: 114 RDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
+ ++ R DW + +K ++ + NG +R +E+ L+ +GV+ ++ E
Sbjct: 175 KANREIPPLRHDW--VHRLKGDFPQLTFVTNGGIRSLEEALFHLKR--VDGVMLGRAVYE 230
Query: 173 NP 174
+P
Sbjct: 231 DP 232
>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
pdb|3B0V|D Chain D, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
Length = 363
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYC-DYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
PE+ P+ +Q +DP+ L AAR E + D +++NLGCP A+ G YGA L+ +L V
Sbjct: 76 PEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARV 135
Query: 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIK-YAKMLE---DAGCSLLAVHGR-------T 113
+ +++ + VPV+ K R+ ++T + A+ +E +AG + VH R T
Sbjct: 136 REILKAXGEAVRVPVTVKXRLGLEGKETYRGLAQSVEAXAEAGVKVFVVHARSALLALST 195
Query: 114 RDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
+ ++ R DW + +K ++ + NG +R +E+ L+ +GV ++ E
Sbjct: 196 KANREIPPLRHDW--VHRLKGDFPQLTFVTNGGIRSLEEALFHLKR--VDGVXLGRAVYE 251
Query: 173 NP 174
+P
Sbjct: 252 DP 253
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 155 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 211
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 147
+ D ++ A E+ G +A+ T + F +++K V A+ IPVL G VR
Sbjct: 31 EVGDPVEMAVRYEEEGADEIAILDITAAPEGRATF---IDSVKRVAEAVSIPVLVGGGVR 87
Query: 148 HMEDVQKCLEETGCEGVLSAESLLENPALFA 178
+ED L G + V + + NP L A
Sbjct: 88 SLED-ATTLFRAGADKVSVNTAAVRNPQLVA 117
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 156 LEETGCEGVLSAESLLEN-PALFAGFRTA-EWIVGSEEISKDGNLDQADL-LVEYLKLCE 212
+E T + + S ++ L P F A EW V S +I NL+ A + +V +K CE
Sbjct: 149 VEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIR---NLESARVSMVGQVKQCE 205
Query: 213 KYPVPWRMIRSHVHKLLGEWFR 234
P WR+ + K WFR
Sbjct: 206 GKPYTWRIELAKTEKYWDGWFR 227
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 15 FCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 73
C+ + + +R+ E D +++NL CP + RG G + LV+++ +
Sbjct: 642 MCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERG-MGLACGQDPELVRNICRWVRQ 700
Query: 74 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133
+ +P K+ PN+ D + A+ ++ G + K W A+ A K
Sbjct: 701 AVQIPFFAKLT--PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGK 758
>pdb|2WFD|A Chain A, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
pdb|2WFD|B Chain B, Structure Of The Human Cytosolic Leucyl-Trna Synthetase
Editing Domain
Length = 252
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 43 CPQRIARRGNYGAFLMDN--LPLVKSLV--EKLALNLNVPVSCK--IRVFPNLQDTIKYA 96
C Q+ AR +Y F DN +P+VK L E L +L+ P++ I V P L TIK
Sbjct: 69 CTQKAARNXSYQGFTKDNGVVPVVKELXGEEILGASLSAPLTSYKVIYVLPXL--TIK-- 124
Query: 97 KMLEDAGCSLLA 108
ED G ++
Sbjct: 125 ---EDKGTGVVT 133
>pdb|1ULZ|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit Of
Pyruvate Carboxylase
Length = 451
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 55 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN---LQDTIKYAKMLEDAGCSLLAVHG 111
A+++ PL L ++ +NL + V + P L + ++AKM E+AG + + H
Sbjct: 48 AYMIGTDPLDTYLNKQRIINLALEVGAD-AIHPGYGFLAENAEFAKMCEEAGITFIGPHW 106
Query: 112 RTRDEKDGKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAES 169
+ E G K R+ K V +PV+ ++G ++ +E+ + E G +L A +
Sbjct: 107 KV-IELMGDKARS-----KEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGYPVLLKATA 160
Query: 170 LLENPALFAGFRTAEWIVGSEEISKDGN--LDQADLLVE 206
+ E + E+ S++ + DLL+E
Sbjct: 161 GGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLE 199
>pdb|3F4W|A Chain A, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
pdb|3F4W|B Chain B, The 1.65a Crystal Structure Of 3-Hexulose-6-Phosphate
Synthase From Salmonella Typhimurium
Length = 211
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 151
++LE+AG +LAVH T + G+K D + V+ RI V + + ++D
Sbjct: 121 RLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKD 175
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 116 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167
+KDG D I+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 475 DKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA 526
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 116 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167
+KDG D I+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 475 DKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA 526
>pdb|2Y88|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase (Variant D11n) With Bound Prfar
pdb|2Y89|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase A (Variant D11n)
Length = 244
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 99 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ--KCL 156
L+ GCS V T KDG + + + V + PV+A+G V ++D++ L
Sbjct: 158 LDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATL 214
Query: 157 EETGCEGVLSAESL 170
G EG + ++L
Sbjct: 215 THRGVEGAIVGKAL 228
>pdb|2Y85|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|2Y85|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Rcdrp
pdb|3ZS4|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Phosphoribosyl Isomerase With Bound Prfar
Length = 244
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 99 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ--KCL 156
L+ GCS V T KDG + + + V + PV+A+G V ++D++ L
Sbjct: 158 LDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATL 214
Query: 157 EETGCEGVLSAESL 170
G EG + ++L
Sbjct: 215 THRGVEGAIVGKAL 228
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 24 LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
+N RRVEPY Y NL + + + YG +PL + V
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKV 170
>pdb|3OG3|A Chain A, Crystal Structure Of An Artificial Thermostable
(Ba)8-Barrel Protein From Identical Half Barrels
Length = 251
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 113 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 50 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKVSINTAAVE 108
Query: 173 NPALFA 178
NP+L
Sbjct: 109 NPSLIT 114
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 113 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 171 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF-LAGADKVSINTAAVE 229
Query: 173 NPALFA 178
NP+L
Sbjct: 230 NPSLIT 235
>pdb|3TDM|A Chain A, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|B Chain B, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|C Chain C, Computationally Designed Tim-Barrel Protein, Halfflr
pdb|3TDM|D Chain D, Computationally Designed Tim-Barrel Protein, Halfflr
Length = 126
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 113 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 55 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 113
Query: 173 NPALFA 178
NP+L
Sbjct: 114 NPSLIT 119
>pdb|3TDN|A Chain A, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
pdb|3TDN|B Chain B, Computationally Designed Two-Fold Symmetric Tim-Barrel
Protein, Flr
Length = 247
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 113 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 55 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 113
Query: 173 NPALFA 178
NP+L
Sbjct: 114 NPSLIT 119
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 113 TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172
T ++DG K D I+ V+ +P++A+G ME + G + V + +E
Sbjct: 176 TSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLR-GADKVSINTAAVE 234
Query: 173 NPALFA 178
NP+L
Sbjct: 235 NPSLIT 240
>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|B Chain B, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|C Chain C, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|D Chain D, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|E Chain E, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV1|F Chain F, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp
Synthase From Bacillus Subtilis
Length = 305
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 96 AKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
AK+ E+AG +AV R D G AD ++ V NA+ IPV+A + H+
Sbjct: 34 AKIAEEAGA--VAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIV 91
Query: 151 DVQKCLEETGCEGVLSAESL 170
+ + LE G + + +E L
Sbjct: 92 EA-RVLEAMGVDYIDESEVL 110
>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|C Chain C, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|E Chain E, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|G Chain G, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|I Chain I, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|K Chain K, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|M Chain M, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|O Chain O, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|Q Chain Q, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|S Chain S, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|U Chain U, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|W Chain W, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 294
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 96 AKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
AK+ E+AG +AV R D G AD ++ V NA+ IPV+A + H+
Sbjct: 31 AKIAEEAGA--VAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIV 88
Query: 151 DVQKCLEETGCEGVLSAESL 170
+ + LE G + + +E L
Sbjct: 89 EA-RVLEAMGVDYIDESEVL 107
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,454,500
Number of Sequences: 62578
Number of extensions: 348471
Number of successful extensions: 972
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 30
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)