BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023070
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 233 bits (595), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL D L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 156/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG+YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 16/238 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PEDRPL VQFCANDPE+ + AA + YCD +D+NLGCPQ IA+RG YGAFL + L++
Sbjct: 71 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQ 130
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A
Sbjct: 131 RMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W IKAV+ A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 191 WEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW 250
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 243
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----------------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 149/245 (60%), Gaps = 16/245 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
PE+RPL +QFC NDPEI+L AA+ PYCD VD+NLGCPQ IA++G YG+FL +N L++
Sbjct: 72 PEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIE 131
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K AD
Sbjct: 132 SIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIAD 191
Query: 126 WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
W I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +F
Sbjct: 192 WEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLP---- 247
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGEWFRIQPG 238
S ++ +D D+ EYL + ++ + I+ H+ KL+ I
Sbjct: 248 ---PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIHTD 302
Query: 239 VREDL 243
+R L
Sbjct: 303 IRSKL 307
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 101/252 (40%), Positives = 149/252 (59%), Gaps = 16/252 (6%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
DRPL VQFCANDPE LL AA+ VE CD VD+NLGCPQ IA++G+YG+FLM+ L+ +L
Sbjct: 86 DRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNL 145
Query: 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127
+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K K A+W
Sbjct: 146 INTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWE 205
Query: 128 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP +F +T
Sbjct: 206 TIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNVGQTK-- 263
Query: 186 IVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGEWFRIQPGVRE 241
+K+ + D ++ EY ++ C++ ++SH K+L + +R
Sbjct: 264 -------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRS 316
Query: 242 DLNAQN-RLTFE 252
L N + T+E
Sbjct: 317 TLATMNAKATWE 328
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AAR V PY + +DIN GCPQR A YGA L++ LV+ +
Sbjct: 81 DCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +E+
Sbjct: 141 VKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
+++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGY 253
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 6/176 (3%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF AND +L +AA V PY + +DIN GCPQR A YGA L++ LV +
Sbjct: 81 DCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDM 140
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V ++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 141 VRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQP---V 197
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG+
Sbjct: 198 HYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGY 253
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D L +QF +DP IL AA+ V PY D + IN GCPQ A + G+ L+D V L
Sbjct: 73 DASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKL 132
Query: 68 VE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
V K L + KIR+ +L T +++E +G ++ VHGRTR +D F +
Sbjct: 133 VRAVKSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVN 190
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
+AI+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 191 LDAIREVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 128/257 (49%), Gaps = 26/257 (10%)
Query: 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
D PL VQF +DP +L AA V VD+N GCP+ R +G+ L+ L+ +
Sbjct: 48 DSPLIVQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADM 107
Query: 68 VEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
V + + P VS KIR+ +++ T+ + E AG + L VHGRT ++
Sbjct: 108 VRQTRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---I 164
Query: 125 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 184
D A++ VK+++ +P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 165 DIQALRIVKDSVSVPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP 224
Query: 185 WIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLN 244
+D + +++L +Y + W + H+ +L F Q R N
Sbjct: 225 ----------------SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFN 266
Query: 245 AQN-RLTFE-FLYNLVD 259
N RL + FL NL+D
Sbjct: 267 ELNGRLAIDHFLNNLLD 283
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 7/184 (3%)
Query: 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKS 66
ED PL VQ N+ LL V PYCD + IN GCP + R G L+ N L+ S
Sbjct: 92 EDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIGCALIYNSDLLCS 151
Query: 67 LVE--KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 124
+V K + + KIR+ L +T++ + L DAG + +HGRTR + + A
Sbjct: 152 MVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQP--A 209
Query: 125 DWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
+ +AIK + + +PV+ANG+ + D+++ + TG GV++ LL NPALFAG+
Sbjct: 210 NLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLLSNPALFAGYT 269
Query: 182 TAEW 185
T W
Sbjct: 270 TCPW 273
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 105/199 (52%), Gaps = 19/199 (9%)
Query: 6 PEDRPLF-----------VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYG 54
P+DR +F Q +D E L AR VE +D+N+GCP++ + +G G
Sbjct: 68 PDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMG 127
Query: 55 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR 114
A L+ + ++ ++ L PV+CKIR+ P+L+DT+ K +E G + +AVHGR R
Sbjct: 128 AALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKR 187
Query: 115 DEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESL 170
+E+ + IKA+ + L IPV+ANG +++ D++ + T V+ A +
Sbjct: 188 EER--PQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAA 245
Query: 171 LENPALF--AGFRTAEWIV 187
+ NP++F G R E ++
Sbjct: 246 MWNPSIFLKEGLRPLEEVM 264
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 19/199 (9%)
Query: 6 PEDRPLF-----------VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYG 54
P+DR +F Q +D E L AR VE +D+N+GCP+ + +G G
Sbjct: 68 PDDRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMG 127
Query: 55 AFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR 114
A L+ + ++ ++ L + PV+CKIR+ P+L+DT+ K +E G S +AVHGR R
Sbjct: 128 AALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNR 187
Query: 115 DEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRHMEDVQKCLEETGCEGVLSAESL 170
DE+ + I+A+ L IPV+ANG +++ D++ + T V+ A +
Sbjct: 188 DER--PQHPVSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAA 245
Query: 171 LENPALFA--GFRTAEWIV 187
+ NP++F G R E ++
Sbjct: 246 MWNPSIFLKDGLRPLEEVM 264
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 113/210 (53%), Gaps = 13/210 (6%)
Query: 7 EDRPLFVQFCANDPEILLNA----ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP 62
E+RP+ +Q ++PE + A A+ ++P D++DIN GC R +++ P
Sbjct: 58 EERPIHIQVFGSNPEEIAQASVVIAKELKP--DFIDINFGCSVPKVLRNKAAGYMLQCPP 115
Query: 63 LVKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119
L+ +V++ L +PVS KIR+ + + + L+ AG SL+A+H RT K G
Sbjct: 116 LMGEVVKETVEALKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHART--AKQG 173
Query: 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 179
+A W+ IK K +P++ +G+V+ D+++ EET C+GV+ + L NP +F
Sbjct: 174 FSGKALWHRIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKE 233
Query: 180 FRTAEWI-VGSEEISKDGNLDQADLLVEYL 208
F+ I VG +E D L++ ++ EY+
Sbjct: 234 FKEKRDIEVGLKE-RMDFILEELSMMTEYM 262
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 105/187 (56%), Gaps = 11/187 (5%)
Query: 6 PEDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCP-QRIARRGNYGAFLMDNLPL 63
P + P+ +Q P+ + AA++ V VDIN+GCP +I ++G G+ L+ +
Sbjct: 94 PRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGG-GSSLLRQPAV 152
Query: 64 VKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+++V+ + ++VPV+ K R+ + +++A+ L+DAG +L +HGRTR + G
Sbjct: 153 AEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQ--GYN 210
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG-- 179
RA W I VK AL IPV+ANG++ +E CLEETG +GV+ + L P L
Sbjct: 211 GRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIE 270
Query: 180 --FRTAE 184
F+T E
Sbjct: 271 HFFKTGE 277
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 5/174 (2%)
Query: 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
ED P VQ DP +L AA+R VE +DIN+GCP + G+ L+ + LV
Sbjct: 66 EDEPRSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVA 125
Query: 66 SLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
+++ + ++VPV+ KIR + ++ + AK+ E AG LAVHGRTR D
Sbjct: 126 EILDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTR--ADLYTGE 183
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
A++ I A+K A+ IPV ANG++ E +K +E+TG + +L + P +F
Sbjct: 184 AEYETIAAIKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 141/268 (52%), Gaps = 20/268 (7%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ DP+ + AA+ VE + +DIN+GCP + R G+ L+ LVK ++ K+
Sbjct: 69 VQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILNKV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++ VPV+ KIR + ++ ++ AK+ E G L +HGRTR +G+ A+++
Sbjct: 129 VKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRTRSCMFEGE---AEYDN 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 188
IKAVK L IP++ANG++ E + L+ T + ++ L NP L FR E ++
Sbjct: 186 IKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPWL---FRVMESLIE 242
Query: 189 SEEISKDGNLDQ-ADLLVEYLK-LCEKYPVP--WRMIRSHVHKLLGEWFRIQPGVREDLN 244
+ I + +L++ ++++++++ L + Y V R+ R HV L + + P R+ N
Sbjct: 243 KDSIVLEPSLNEKCNVILQHIQELHQFYGVEKGCRIARKHVAWYL-QGIQPNPVFRQAFN 301
Query: 245 A-----QNRLTFEFLYNLVDRLRELGVR 267
A + + E +NL+ +E VR
Sbjct: 302 AITDPKEQLIALEGFFNLILMDKEKNVR 329
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 1 MKNLPPEDRPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMD 59
M PE P+ VQ +P+++ AA+ E +DIN GCP + G+ G+ LM
Sbjct: 59 MVECEPEQFPMAVQLAGCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMR 118
Query: 60 NLPLVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE- 116
+ L ++E A + +PV+ K+R + + + A++ E+ G L+ VHGRTR++
Sbjct: 119 DEALAARILEATAKAVTIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQF 178
Query: 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+G ADW+ I++VK A+ IPV+ NG++ + V + L E+G +GV+ P
Sbjct: 179 YNGT---ADWSFIRSVKEAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRPWF 235
Query: 177 FAGFRTAEWIVGSEEISKDGNLDQADLLVE-YLKLCEKYPVP--WRMIRSHV 225
A + +I E + +Q D L+E Y + Y V R+ R H+
Sbjct: 236 PA--QVMHYIRTGERLPDPPLHEQLDTLLEHYDAMLTHYGVEGGLRVARKHI 285
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 130/256 (50%), Gaps = 32/256 (12%)
Query: 8 DRPLFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
++PL +Q E L+ AA+ V+ D +DIN+GCP + + GA + + +
Sbjct: 65 EKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIY 124
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
+V + +N PV+ K+R+ + +K A+ +E AG +A+HGRTR + +
Sbjct: 125 EMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQM--YEGT 182
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
A+W+ IK VK ++ IPV+ NG+V+ +D ++ L+ETG +GV+ + L NP + +RT
Sbjct: 183 ANWDIIKEVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNPWMI--YRTV 240
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY----------PVPWRMIRSHVHKLLGEWF 233
+++ + G L + + E + +C+ + V R +R H W+
Sbjct: 241 QYL-------ETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKH-----AAWY 288
Query: 234 RIQPGVREDLNAQNRL 249
GV+ + N +N +
Sbjct: 289 L--KGVKGNANVRNEI 302
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 9 RPLFVQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 67
RP VQ + + AA+ + D +DIN+GCP + G G+ LM + L
Sbjct: 59 RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGL 118
Query: 68 VEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+E +++PV+ K+R+ N + A+ E +G L+ +HGRTR + + RAD
Sbjct: 119 IEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQF--YEGRAD 176
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W+AI+AV+ + +P++ANG+V D Q+ L +G + V+ P AG
Sbjct: 177 WDAIRAVREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRP-WHAGV----- 230
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWF 233
+ G+ E ++ D AD+ VE+ ++ + IR H K LG W+
Sbjct: 231 LAGAAEPRRE---DIADIAVEHYRMMLDFYGEAVAIR-HARKHLG-WY 273
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E P+ VQ +P+ L AAR V+ +DIN+GCP + G+ LM + LV
Sbjct: 63 EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEELVA 122
Query: 66 SLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
++ + +NVPV+ KIR + ++ A++ +D G + LAVHGRTRD+
Sbjct: 123 RILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTGS 180
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
A++ I +K AL+IPV+ANG++ + + L ETG + V+ + P +F A
Sbjct: 181 AEYATIAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWIFG--EVA 238
Query: 184 EWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV 225
++ E + D L+ +L+ + P R+ R H+
Sbjct: 239 HFLATGEVLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKHL 283
>sp|Q8EJR8|DUSB_SHEON tRNA-dihydrouridine synthase B OS=Shewanella oneidensis (strain
MR-1) GN=dusB PE=3 SV=1
Length = 322
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ DPE++ AA+ VE +DIN+GCP + + G+ LM N PLVK +++ +
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
++VPV+ KIR P ++ ++ A++ ED G + LAVHGRTR + K A+++ I
Sbjct: 129 VAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTR--QCMYKGNAEYDTI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KA+K + IPV+ANG++ E + L+ TG + ++ P +F
Sbjct: 187 KAIKQNVSIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIF 234
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 7/198 (3%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +P ++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 71 VQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEAT 130
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+ +P++ K+R+ N ++ AK+ E +G ++ VHGRTR + ADW+ I
Sbjct: 131 VKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRCQF--YSGNADWDFI 188
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
++VK A++IPV+ANG++ + ++ L+++G +G++ P L + + A ++
Sbjct: 189 RSVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLVS--QIAHYLKTG 246
Query: 190 EEISKDGNLDQADLLVEY 207
EE +Q D++ E+
Sbjct: 247 EEKPAPSIAEQLDIVTEH 264
>sp|P44606|DUSC_HAEIN tRNA-dihydrouridine synthase C OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusC PE=3 SV=1
Length = 310
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 11/174 (6%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ VQ P+ L NA R ++ +D+N GCP + N GA L+ L+
Sbjct: 64 PVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKTVNGSNGGAALLKQPELIYRAT 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ L A+ PVS K+R+ + ++ + A +E G + + VHGRT+ DG +RAD
Sbjct: 124 QALRRAVPSEFPVSVKVRLGWDDISQAFEIADAVEQGGATEITVHGRTK--ADG--YRAD 179
Query: 126 ---WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W I V+ L IPV+ANG + H +D Q CL +TGC+ ++ L P L
Sbjct: 180 RINWKKISEVRERLSIPVIANGEIWHWQDGQDCLSQTGCQDLMVGRGALNIPNL 233
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 105/205 (51%), Gaps = 7/205 (3%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +P ++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 71 VQLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLAAKIFEAT 130
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+ +PV+ K+R+ N ++ AK+ E +G ++ VHGRTR + ADW+ I
Sbjct: 131 VEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQF--YSGNADWDFI 188
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
++VK +++IPV+ANG++ + ++ L+++G +G++ P L + + ++
Sbjct: 189 RSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLIS--QIDHYLKTG 246
Query: 190 EEISKDGNLDQADLLVEYLKLCEKY 214
EE S +Q D++ E+ + Y
Sbjct: 247 EEKSAPSIAEQLDIVTEHYEAILDY 271
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 16/228 (7%)
Query: 30 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89
VE +DIN+GCP + G+ L+ + LV ++ + ++VPV+ KIR +
Sbjct: 90 VEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEILHAVVSAVDVPVTLKIRTGWDR 149
Query: 90 --QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 147
++ + AK+ E AG LAVHGRTR D A+++ I A+K A+ IPV ANG++
Sbjct: 150 ANKNGLNVAKIAEQAGIQALAVHGRTR--ADLYTGEAEYDTIGAIKQAVSIPVFANGDIT 207
Query: 148 HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQAD-LLVE 206
E + LE TG +G+L + P + FR E + + E LD+ + +L+E
Sbjct: 208 SPEKARAVLETTGVDGLLIGRAAQGRPWI---FREIEHYLRTGEHLPAPQLDEVERILLE 264
Query: 207 YLKLCEKY---PVPWRMIRSHVHKLL-----GEWFRIQPGVREDLNAQ 246
+L + + R+ R HV L G+ FR + ED AQ
Sbjct: 265 HLAALHAFYGDVMGVRIARKHVGWYLATRPGGKEFRARFNALEDTQAQ 312
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 131/263 (49%), Gaps = 28/263 (10%)
Query: 13 VQFCANDP-EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP E+ AA VE +DIN+GCP + R G+ L+ LV+ ++ ++
Sbjct: 69 VQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKILREV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
+NVPV+ KIR + ++ ++ K+ E G L VHGRTR +G+ A+++
Sbjct: 129 VSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRTRACLFEGE---AEYDN 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVG 188
IKAVK A+ IPV+ANG++ + L TG + ++ + L NP L F+ E ++
Sbjct: 186 IKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL---FQAVENLIE 242
Query: 189 SEEISKDGNLDQ--ADLLVEYLKLCEKY--PVPWRMIRSHVHKLLGEWF--RIQPG--VR 240
IS+ +L + +L +L + Y +R+ R HV W+ IQP +
Sbjct: 243 HNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHV-----AWYLQGIQPDSVFK 297
Query: 241 EDLNA-----QNRLTFEFLYNLV 258
+ NA + + E +NL+
Sbjct: 298 QTFNAISDPKEQLIVLEDFFNLI 320
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 25/261 (9%)
Query: 13 VQFCANDPEILLNAARRV--EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 70
VQ DP+ + AARR+ + +DIN+GCP + R G+ L+ LVK ++
Sbjct: 69 VQIAGCDPD-EMAAARRINADSGAQIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILST 127
Query: 71 LALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR--ADW 126
+ ++VPV+ KIR P ++ ++ AK+ ED G L +HGRTR F A++
Sbjct: 128 VVKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGRTR----ACLFNGFAEY 183
Query: 127 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWI 186
++I+AVK A+ IP++ANG++ + L+ TG + ++ + P +F + ++
Sbjct: 184 DSIRAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIFREIQ--HYL 241
Query: 187 VGSEEISKDGNLDQADLLVEYLKLCEKYPVP---WRMIRSHVHKLLGEWFRIQPGVREDL 243
E ++ ++ LL+E+++ + P +R+ R HV L E
Sbjct: 242 DTGELLAPLPLVEVKRLLIEHIRELHDFYGPGKGFRIARKHVSWYLQE---------HAP 292
Query: 244 NAQNRLTFEFLYNLVDRLREL 264
N Q R TF + + ++L L
Sbjct: 293 NDQFRRTFNAIEDASEQLEAL 313
>sp|Q8XYX1|DUSC_RALSO tRNA-dihydrouridine synthase C OS=Ralstonia solanacearum (strain
GMI1000) GN=dusC PE=3 SV=1
Length = 326
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ +Q +DPE L NAA+ +D+N GCP ++ R GA L+ L+ +V
Sbjct: 65 PMVIQLLGSDPEWLARNAAQAATVSPHGIDLNFGCPAKVVNRHGGGAMLLATPELLHRIV 124
Query: 69 EKL--ALNLNVPVSCKIRVFPNLQDT---IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
+ A+ + V+ K+R+ + DT I A L + G + L VH RTRD G +
Sbjct: 125 STVRAAVPARIAVTAKMRL--GVSDTSLAIACATALAEGGAASLVVHARTRDH--GYRPP 180
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A W+ I + +A+R+PV+ANG V ++D +C +GC+ V+ + +P L
Sbjct: 181 AHWDWIARIADAVRVPVVANGEVWTVDDWARCRAVSGCDDVMIGRGAVSDPFL 233
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
E P+ VQ +P+ L AAR V+ +DIN+GCP + G+ LM + LV
Sbjct: 63 EPDPISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEDLVA 122
Query: 66 SLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 123
++ + ++VPV+ KIR + ++ A++ +D G + LAVHGRTRD+
Sbjct: 123 RILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTGT 180
Query: 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178
A++ I +K AL+IPV+ANG++ + + L +TG + V+ + P +F
Sbjct: 181 AEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWIFG 235
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 94/169 (55%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ NDP+ + AAR V +DIN+GCP + R G+ L+ + LVK ++ +
Sbjct: 69 VQIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ I+ A++ E+ G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRTRSCLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q87N01|DUSC_VIBPA tRNA-dihydrouridine synthase C OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusC PE=3 SV=1
Length = 322
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 5/171 (2%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ VQ +P + NA R E +D+N GCP ++ + GA L+ + L+ S+V
Sbjct: 64 PVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIHSVV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ A+ N+PVS KIR+ + N +D + ++ AG + L VH RT+ + K
Sbjct: 124 KACRDAVPANIPVSAKIRLGWENPEDCFEIVDAIQSAGANELTVHARTK-QGGYKASEIK 182
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W I ++ IP++ANG + + ED Q+C+E TG + ++ P L
Sbjct: 183 WEYINKIRERFSIPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNIPNL 233
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 96/168 (57%), Gaps = 5/168 (2%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+++ +AA+ VE +DIN+GCP + + G+ L+ +++ +++ +
Sbjct: 69 VQIAGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLQYPTIIEEILKAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
++VPV+ K R + ++ ++ AK+ ED G LA+HGRT+ K A++++I
Sbjct: 129 VNAVDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTKACM--YKGEAEYDSI 186
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
KAVK A+ IPV+ANG++ E + LE TG + ++ P +F
Sbjct: 187 KAVKEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q8EFG7|DUSC_SHEON tRNA-dihydrouridine synthase C OS=Shewanella oneidensis (strain
MR-1) GN=dusC PE=3 SV=1
Length = 315
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ VQ +P + NA R +E VD N GCP ++ R N GA L+ +
Sbjct: 60 PSGTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+V + A+ PV+ KIR+ + + ++ A + +AG + LA+H R++ DG K
Sbjct: 120 HDIVRAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVYEAGATELAIHARSK--VDGYK 177
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181
A W I V+ L IPV+ANG + + +D ++C++ TGC+ ++ + P L +
Sbjct: 178 PPAYWEYITEVRERLPIPVIANGEIWNRDDAKRCMQVTGCDSIMIGRGAISLPNLADTIK 237
Query: 182 TA 183
T
Sbjct: 238 TG 239
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP + +AAR VE +DIN+GCP + R G+ L+ LVKS++ +
Sbjct: 69 VQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILIGV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ ++ A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP + +AAR VE +DIN+GCP + R G+ L+ LVKS++ +
Sbjct: 69 VQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILIGV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ ++ A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IP++ANG++ + + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q8Z5B2|DUSC_SALTI tRNA-dihydrouridine synthase C OS=Salmonella typhi GN=dusC PE=3
SV=1
Length = 312
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDY-VDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ +Q P+ L A R Y VD+N GCP ++ GA L+ + L+
Sbjct: 60 PSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLTDPELI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+ + A+ ++PV+ K+R+ + D + A ++ AG S L VHGRT+ +
Sbjct: 120 YQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTK----AQG 175
Query: 122 FRA---DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+RA DW AI ++ L IPV+ANG + + Q C+ +GC+ V+ L P L
Sbjct: 176 YRAEHIDWQAIGEIRQRLTIPVIANGEIWDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|Q9CJW1|DUSC_PASMU tRNA-dihydrouridine synthase C OS=Pasteurella multocida (strain
Pm70) GN=dusC PE=3 SV=1
Length = 312
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 2 KNLPPEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN 60
+ L P+ VQ P+ L NA R +E +D+N GCP + N GA L+
Sbjct: 56 QGLTASGTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQ 115
Query: 61 LPLVKSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 117
L+ + L A+ +PVS K+R+ + N + + A ++ G + + +HGRT+
Sbjct: 116 PELIYHATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQQGGATEITIHGRTK--M 173
Query: 118 DGKKFRAD---WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
DG +RAD W I V+ L IPV+ANG + + Q CL ETGC+ ++ L P
Sbjct: 174 DG--YRADRINWAKINDVRQRLSIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALNIP 231
Query: 175 AL 176
L
Sbjct: 232 NL 233
>sp|Q8ZNM4|DUSC_SALTY tRNA-dihydrouridine synthase C OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusC PE=3 SV=1
Length = 312
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDY-VDINLGCPQRIARRGNYGAFLMDNLPLV 64
P P+ +Q P+ L A R Y VD+N GCP ++ GA L+ + L+
Sbjct: 60 PSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLKDPELI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+ + A+ ++PV+ K+R+ + D + A ++ AG S L VHGRT+ +
Sbjct: 120 YQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTK----AQG 175
Query: 122 FRA---DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+RA DW AI ++ L IPV+ANG + + Q C+ +GC+ V+ L P L
Sbjct: 176 YRAEHIDWQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|Q88LF2|DUSC_PSEPK tRNA-dihydrouridine synthase C OS=Pseudomonas putida (strain
KT2440) GN=dusC PE=3 SV=1
Length = 323
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 6/171 (3%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ VQ +DP L NAA E +D+N GCP + + GA L+ L+ ++V
Sbjct: 64 PMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLHAIV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ A+ N+PV+ K+R+ F + ++ A L + G + L VH RT+ E G K A
Sbjct: 124 REVRRAVPANIPVTSKMRLGFDSPDGALECATALAEGGSAHLVVHARTKVE--GYKPPAH 181
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W + V++ +++PV ANG + ++D ++C E +G E ++ L+ P L
Sbjct: 182 WEWVARVQDVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRPDL 232
>sp|Q884C6|DUSC_PSESM tRNA-dihydrouridine synthase C OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusC PE=3 SV=1
Length = 317
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 90/171 (52%), Gaps = 6/171 (3%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
PL +Q +DP L NAA E +D+N GCP + R GA L+ L+ ++V
Sbjct: 64 PLRLQLLGSDPVCLAENAAFACELGAPVLDLNFGCPAKTVNRSRGGAILLKEPELLHTIV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ A+ ++PV+ K+R+ + N + A+ L D G + + VH RT+ DG K A
Sbjct: 124 SQVRRAVPKDIPVTAKMRLGYENTDGALDCARALADGGAAQIVVHARTK--VDGYKPPAH 181
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W I ++ +++PV+ANG + +ED ++C E G ++ L+ P L
Sbjct: 182 WEWIARIQEVVKVPVVANGEIWTVEDWRRCREICGARDIMIGRGLVARPDL 232
>sp|O68273|DUSC_CUPNH tRNA-dihydrouridine synthase C OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=dusC PE=3 SV=2
Length = 322
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 6/171 (3%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ +Q +DPE L NAA +D+N GCP ++ R GA L+ N L+ +V
Sbjct: 65 PMVIQLLGSDPEWLARNAAYAATLSPHGIDLNFGCPAKVVNRHGGGAMLLTNPELLNRIV 124
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ A+ ++ V+ K+R+ + I A L + G + L VH RTRD G + A
Sbjct: 125 ASVRAAVPAHIAVTAKMRLGVSDASLAIDCATALAEGGAASLVVHARTRDH--GYRPPAH 182
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
W+ I + A+ +PV+ANG+V + D ++C +GC V+ + +P L
Sbjct: 183 WDWIARIAAAVDVPVIANGDVWTVADWERCRAVSGCADVMIGRGAVSDPFL 233
>sp|Q8ZGV2|DUSC_YERPE tRNA-dihydrouridine synthase C OS=Yersinia pestis GN=dusC PE=3 SV=2
Length = 312
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 91/169 (53%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
+Q PE L NAAR V VD+N GCP ++ GA L+ + L+ + +
Sbjct: 67 IQLLGQYPEWLAENAARAVALGSYGVDLNCGCPSKLVNGSGGGATLLKDPELIYQGAKAM 126
Query: 72 --ALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWN 127
A+ ++PV+ KIR+ + D + A ++ AG + LAVHGRT++ DG + R +W
Sbjct: 127 RAAVPAHLPVTVKIRLGWDSGDRQFEIADAVQQAGATELAVHGRTKE--DGYQAERINWQ 184
Query: 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
AI ++ L IPV+ANG + + Q+C++ TGC+ V+ L P L
Sbjct: 185 AIGEIRQRLTIPVIANGEIWDYQSAQECMKVTGCDAVMLGRGALNVPNL 233
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 103/198 (52%), Gaps = 7/198 (3%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +P+++ AA+ E +D+N GCP + G G+ LM + L + E
Sbjct: 71 VQLAGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEAT 130
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
+ +PV+ K+R+ N ++ AK+ ++G ++ VHGRTR + A+W+ I
Sbjct: 131 VKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQF--YSGNANWDFI 188
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGS 189
+ VK A++IPV+ANG++ + ++ L+ +G +G++ + P L + + A ++
Sbjct: 189 RTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGKPWLIS--QIAYYLKTG 246
Query: 190 EEISKDGNLDQADLLVEY 207
+E +Q D++ ++
Sbjct: 247 KEKPAPSIAEQLDIITKH 264
>sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12)
GN=dusB PE=3 SV=1
Length = 321
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++ ++
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1
Length = 321
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++ ++
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT7|DUSB_ECO57 tRNA-dihydrouridine synthase B OS=Escherichia coli O157:H7 GN=dusB
PE=3 SV=1
Length = 321
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 96/169 (56%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ +DP+ + +AAR VE +DIN+GCP + R G+ L+ +VKS++ ++
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 72 ALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR P ++ + A++ ED G L +HGRTR +G+ A++++
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGE---AEYDS 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 186 IRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q9AMN9|DUSC_PSEAC tRNA-dihydrouridine synthase C OS=Pseudomonas alcaligenes GN=dusC
PE=3 SV=1
Length = 315
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ VQF +DP+ L NAA +D+N GCP + + GA L+ L+ ++V
Sbjct: 64 PMRVQFLGSDPQCLADNAAFACTLGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLHAIV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
++ + +PV+ K+R+ F + + A+ L + G S + VH RT+ E G K A
Sbjct: 124 REVRRTVPAEIPVTAKMRLGFEGKEGALDCARALAEGGASQIVVHARTKVE--GYKPPAH 181
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL---FAGFRT 182
W + V+ + +PV ANG V ++D ++C E +G + ++ L+ P L A R
Sbjct: 182 WEWVARVQEVVGVPVFANGEVWTLDDWRRCREISGVDDIMLGRGLVSRPGLARQIAAVRA 241
Query: 183 AE 184
E
Sbjct: 242 GE 243
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 7/169 (4%)
Query: 13 VQFCANDPEILLNAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
VQ ++P + AA+ Y +DIN+GCP + + G+ L+ LV +++ +
Sbjct: 69 VQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARILDAV 128
Query: 72 ALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNA 128
++VPV+ KIR ++ ++ AK+ E AG S L +HGRTRD +G+ A++ +
Sbjct: 129 VNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNGQ---AEYES 185
Query: 129 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177
IKAVK A+ +P++ANG++ + + L+ TG + V+ P LF
Sbjct: 186 IKAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPWLF 234
>sp|Q9HZ95|DUSC_PSEAE tRNA-dihydrouridine synthase C OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusC
PE=3 SV=1
Length = 319
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 10 PLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 68
P+ VQ +DP L NAA E +D+N GCP + R GA L+ L+ +V
Sbjct: 64 PMRVQLLGSDPACLADNAAFACELGAPVIDLNFGCPAKTVNRSRGGAVLLKEPELMHDIV 123
Query: 69 EKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+ A+ + V+ K+R+ + + + A+ L D G + + VH RT+ DG + A
Sbjct: 124 AAVRRAVPSEIAVTSKMRLGYDSPDGALDCARALADGGSAHVVVHARTK--VDGYRPPAH 181
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W + V A+R+PV ANG V ++D +C E +G E ++ L+ P L + A W
Sbjct: 182 WEWVARVAEAVRVPVFANGEVWTLDDYLRCREVSGVEDIMLGRGLVSRPGL--ARQIAAW 239
Query: 186 IVGSE 190
G E
Sbjct: 240 RDGGE 244
>sp|Q8FFV5|DUSC_ECOL6 tRNA-dihydrouridine synthase C OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusC PE=3 SV=2
Length = 316
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 5/175 (2%)
Query: 6 PEDRPLFVQFCANDPEILL-NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLV 64
P + VQ P+ L NAAR VE VD+N GCP + GA L+ + L+
Sbjct: 60 PSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119
Query: 65 KSLVEKL--ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 121
+ + A+ ++PVS K+R+ + + + + A ++ AG + L VHGRT+ E+ +
Sbjct: 120 YQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTK-EQGYRA 178
Query: 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
DW AI ++ L IPV+ANG + + Q+C+ +GC+ V+ L P L
Sbjct: 179 EHIDWQAIGEIRQRLNIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNL 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.140 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,269,662
Number of Sequences: 539616
Number of extensions: 4640125
Number of successful extensions: 13945
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 494
Number of HSP's that attempted gapping in prelim test: 13236
Number of HSP's gapped (non-prelim): 970
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)