Query 023070
Match_columns 287
No_of_seqs 329 out of 2508
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2335 tRNA-dihydrouridine sy 100.0 5.7E-56 1.2E-60 399.8 26.3 257 2-272 67-328 (358)
2 COG0042 tRNA-dihydrouridine sy 100.0 1.4E-54 3E-59 398.1 27.3 250 5-263 63-319 (323)
3 PF01207 Dus: Dihydrouridine s 100.0 1.4E-53 2.9E-58 390.6 16.3 250 2-259 47-302 (309)
4 PRK10550 tRNA-dihydrouridine s 100.0 8.9E-52 1.9E-56 378.1 27.7 245 4-261 58-310 (312)
5 PRK10415 tRNA-dihydrouridine s 100.0 9.3E-52 2E-56 380.2 27.6 254 3-263 59-318 (321)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 5.5E-51 1.2E-55 373.6 26.8 240 2-247 48-299 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 1.3E-47 2.8E-52 353.1 27.4 254 3-263 57-316 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 1.2E-47 2.6E-52 354.5 27.2 254 2-261 58-326 (333)
9 KOG2333 Uncharacterized conser 100.0 3.7E-43 8E-48 323.9 21.4 258 3-286 314-585 (614)
10 cd02801 DUS_like_FMN Dihydrour 100.0 1.8E-38 3.9E-43 279.2 19.0 178 3-182 49-228 (231)
11 TIGR00736 nifR3_rel_arch TIM-b 100.0 1.2E-36 2.6E-41 265.9 19.1 160 7-173 66-226 (231)
12 cd02911 arch_FMN Archeal FMN-b 100.0 1.3E-36 2.9E-41 267.6 18.6 161 8-181 72-232 (233)
13 TIGR01037 pyrD_sub1_fam dihydr 100.0 1.5E-31 3.2E-36 244.4 18.9 168 7-181 89-277 (300)
14 cd02940 DHPD_FMN Dihydropyrimi 100.0 1.5E-30 3.2E-35 237.6 17.2 170 8-181 99-296 (299)
15 KOG2334 tRNA-dihydrouridine sy 100.0 5.1E-30 1.1E-34 234.2 19.2 216 8-240 81-300 (477)
16 cd04740 DHOD_1B_like Dihydroor 100.0 4E-29 8.7E-34 227.9 18.7 168 7-181 88-274 (296)
17 PRK07259 dihydroorotate dehydr 100.0 8.8E-29 1.9E-33 226.2 19.5 169 7-182 90-278 (301)
18 cd02810 DHOD_DHPD_FMN Dihydroo 100.0 8.2E-29 1.8E-33 225.1 18.0 169 7-181 97-287 (289)
19 PRK13523 NADPH dehydrogenase N 100.0 6.8E-29 1.5E-33 229.6 15.0 161 21-182 142-320 (337)
20 cd04734 OYE_like_3_FMN Old yel 100.0 1E-28 2.2E-33 229.4 15.5 162 21-182 141-330 (343)
21 PRK08318 dihydropyrimidine deh 100.0 6.3E-28 1.4E-32 230.1 17.3 169 8-182 99-298 (420)
22 cd04733 OYE_like_2_FMN Old yel 100.0 5.1E-28 1.1E-32 224.6 15.8 163 19-181 147-336 (338)
23 cd04741 DHOD_1A_like Dihydroor 100.0 2.8E-27 6.1E-32 215.5 19.1 168 7-181 90-287 (294)
24 cd04738 DHOD_2_like Dihydrooro 100.0 2.9E-27 6.2E-32 218.5 16.9 168 7-181 127-324 (327)
25 cd02931 ER_like_FMN Enoate red 99.9 6.9E-27 1.5E-31 220.0 16.5 162 21-182 150-350 (382)
26 cd02933 OYE_like_FMN Old yello 99.9 8.7E-27 1.9E-31 215.9 16.1 157 21-182 152-329 (338)
27 PRK05286 dihydroorotate dehydr 99.9 9.1E-27 2E-31 216.4 15.3 168 7-181 136-333 (344)
28 cd02932 OYE_YqiM_FMN Old yello 99.9 1.3E-26 2.8E-31 215.0 16.0 162 20-181 153-334 (336)
29 cd02803 OYE_like_FMN_family Ol 99.9 1.8E-26 3.8E-31 213.2 16.5 162 20-181 140-325 (327)
30 cd04735 OYE_like_4_FMN Old yel 99.9 9E-27 1.9E-31 217.3 13.6 161 21-182 144-328 (353)
31 cd04747 OYE_like_5_FMN Old yel 99.9 7.4E-26 1.6E-30 210.7 15.7 160 21-182 144-343 (361)
32 cd02929 TMADH_HD_FMN Trimethyl 99.9 2.3E-25 5E-30 208.8 15.8 162 20-182 149-334 (370)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 99.9 3.6E-25 7.7E-30 206.6 16.2 163 20-182 136-321 (353)
34 cd04739 DHOD_like Dihydroorota 99.9 1.2E-24 2.6E-29 200.8 18.8 166 8-181 99-281 (325)
35 PRK08255 salicylyl-CoA 5-hydro 99.9 9.3E-25 2E-29 222.1 16.9 160 20-179 550-729 (765)
36 PRK07565 dihydroorotate dehydr 99.9 1.6E-23 3.5E-28 194.1 18.4 166 8-181 101-283 (334)
37 COG1902 NemA NADH:flavin oxido 99.9 2E-23 4.4E-28 194.0 16.2 162 21-182 149-333 (363)
38 PRK10605 N-ethylmaleimide redu 99.9 4.4E-22 9.5E-27 186.0 16.2 157 21-182 159-336 (362)
39 PF00724 Oxidored_FMN: NADH:fl 99.9 1.3E-22 2.8E-27 188.6 12.0 163 20-182 148-336 (341)
40 PLN02495 oxidoreductase, actin 99.9 2.3E-21 5E-26 181.2 17.0 170 8-181 113-314 (385)
41 TIGR01036 pyrD_sub2 dihydrooro 99.9 8.4E-21 1.8E-25 175.6 15.2 169 6-181 132-332 (335)
42 COG0167 PyrD Dihydroorotate de 99.9 2.9E-20 6.3E-25 168.4 17.1 167 7-181 95-285 (310)
43 PLN02411 12-oxophytodienoate r 99.8 1.7E-20 3.6E-25 177.0 15.9 161 21-182 165-357 (391)
44 PRK02506 dihydroorotate dehydr 99.8 2.4E-20 5.3E-25 171.0 15.7 168 8-181 92-285 (310)
45 PLN02826 dihydroorotate dehydr 99.8 6.2E-19 1.3E-23 166.4 18.7 166 9-181 187-385 (409)
46 PF01180 DHO_dh: Dihydroorotat 99.8 2E-19 4.4E-24 164.0 14.3 169 8-182 96-289 (295)
47 cd02809 alpha_hydroxyacid_oxid 99.8 3.6E-19 7.8E-24 162.7 15.1 142 8-171 115-260 (299)
48 PRK14024 phosphoribosyl isomer 99.8 1.1E-17 2.3E-22 148.4 14.7 124 53-180 103-235 (241)
49 PRK01033 imidazole glycerol ph 99.7 2E-16 4.3E-21 141.7 14.8 142 13-173 77-232 (258)
50 TIGR02151 IPP_isom_2 isopenten 99.7 7.2E-16 1.6E-20 142.8 15.6 155 7-172 112-288 (333)
51 PRK04180 pyridoxal biosynthesi 99.7 1.5E-16 3.2E-21 141.4 10.0 138 25-174 28-241 (293)
52 PRK00748 1-(5-phosphoribosyl)- 99.7 2.7E-15 5.9E-20 132.1 15.1 143 13-173 77-226 (233)
53 PRK05437 isopentenyl pyrophosp 99.6 7.1E-15 1.5E-19 137.0 17.8 154 8-172 120-295 (352)
54 cd04731 HisF The cyclase subun 99.6 2.8E-15 6.1E-20 133.0 14.1 136 23-175 83-231 (243)
55 TIGR03572 WbuZ glycosyl amidat 99.6 3.4E-15 7.4E-20 131.6 14.3 139 13-170 77-230 (232)
56 TIGR01304 IMP_DH_rel_2 IMP deh 99.6 9.6E-16 2.1E-20 142.8 11.2 136 5-171 82-220 (369)
57 cd04732 HisA HisA. Phosphorib 99.6 7E-15 1.5E-19 129.5 14.2 147 11-176 74-228 (234)
58 cd02811 IDI-2_FMN Isopentenyl- 99.6 2.4E-14 5.1E-19 132.4 16.8 154 8-172 112-289 (326)
59 PRK13585 1-(5-phosphoribosyl)- 99.6 3.3E-14 7.1E-19 126.0 14.8 152 11-181 77-236 (241)
60 TIGR00007 phosphoribosylformim 99.6 5.3E-14 1.1E-18 123.8 15.2 141 12-173 74-224 (230)
61 cd04722 TIM_phosphate_binding 99.6 1.6E-13 3.4E-18 116.0 16.3 142 7-168 56-200 (200)
62 PRK02083 imidazole glycerol ph 99.6 7.1E-14 1.5E-18 124.8 14.2 128 29-173 92-233 (253)
63 KOG0134 NADH:flavin oxidoreduc 99.5 5.6E-14 1.2E-18 129.9 12.2 163 20-182 173-363 (400)
64 TIGR00735 hisF imidazoleglycer 99.5 1.6E-13 3.4E-18 122.7 13.7 117 54-173 103-235 (254)
65 COG0106 HisA Phosphoribosylfor 99.5 1.1E-12 2.4E-17 114.2 13.8 150 9-178 74-232 (241)
66 PRK08649 inosine 5-monophospha 99.4 1.2E-12 2.5E-17 122.4 10.4 104 59-170 115-218 (368)
67 PRK05458 guanosine 5'-monophos 99.4 1.8E-11 3.9E-16 112.5 16.7 134 17-172 93-235 (326)
68 TIGR03151 enACPred_II putative 99.4 1.9E-11 4.2E-16 112.1 15.9 137 8-175 62-198 (307)
69 cd04737 LOX_like_FMN L-Lactate 99.4 1.3E-11 2.8E-16 114.7 14.1 156 8-174 124-312 (351)
70 TIGR02708 L_lactate_ox L-lacta 99.3 2.7E-11 5.9E-16 112.8 15.2 154 8-172 132-317 (367)
71 KOG1436 Dihydroorotate dehydro 99.3 1.2E-11 2.5E-16 110.5 11.4 175 4-182 174-376 (398)
72 PLN02446 (5-phosphoribosyl)-5- 99.3 8.3E-11 1.8E-15 104.5 15.2 150 9-177 82-250 (262)
73 TIGR01919 hisA-trpF 1-(5-phosp 99.3 5.4E-11 1.2E-15 105.6 13.7 149 10-178 74-236 (243)
74 PRK02083 imidazole glycerol ph 99.3 1.5E-11 3.2E-16 109.9 9.9 89 90-182 30-118 (253)
75 cd04730 NPD_like 2-Nitropropan 99.3 1.5E-10 3.2E-15 102.0 15.9 140 8-176 53-194 (236)
76 cd00381 IMPDH IMPDH: The catal 99.3 1.2E-10 2.6E-15 107.6 15.9 144 9-176 82-235 (325)
77 cd04731 HisF The cyclase subun 99.3 2.3E-11 4.9E-16 108.0 9.9 89 90-182 27-115 (243)
78 PRK13587 1-(5-phosphoribosyl)- 99.3 2.1E-10 4.6E-15 101.3 15.3 139 13-172 79-226 (234)
79 PRK14114 1-(5-phosphoribosyl)- 99.2 2.2E-10 4.9E-15 101.5 14.9 142 13-175 76-231 (241)
80 PF00977 His_biosynth: Histidi 99.2 1.3E-10 2.8E-15 102.4 12.9 145 10-173 73-226 (229)
81 cd02922 FCB2_FMN Flavocytochro 99.2 2.7E-10 5.8E-15 105.9 15.1 159 8-175 117-308 (344)
82 cd03319 L-Ala-DL-Glu_epimerase 99.2 9.4E-10 2E-14 101.3 17.8 136 6-167 121-258 (316)
83 TIGR00735 hisF imidazoleglycer 99.2 1.6E-10 3.4E-15 103.4 9.8 89 90-182 30-118 (254)
84 TIGR01306 GMP_reduct_2 guanosi 99.1 1.6E-09 3.5E-14 99.3 16.0 140 10-171 84-231 (321)
85 cd04729 NanE N-acetylmannosami 99.1 1.2E-09 2.5E-14 95.6 14.3 127 25-175 84-214 (219)
86 cd04723 HisA_HisF Phosphoribos 99.1 1.6E-09 3.4E-14 95.8 15.2 141 12-174 80-225 (233)
87 cd04732 HisA HisA. Phosphorib 99.1 3.6E-10 7.8E-15 99.5 10.2 89 90-182 29-117 (234)
88 PF04131 NanE: Putative N-acet 99.1 9.7E-10 2.1E-14 92.5 12.1 129 22-178 53-183 (192)
89 PRK13125 trpA tryptophan synth 99.1 2.1E-09 4.6E-14 95.6 14.8 148 18-172 15-219 (244)
90 PRK13586 1-(5-phosphoribosyl)- 99.1 2.1E-09 4.7E-14 94.7 14.5 140 13-173 76-224 (232)
91 cd04736 MDH_FMN Mandelate dehy 99.1 2.3E-09 5E-14 99.8 15.2 156 8-172 115-323 (361)
92 COG0107 HisF Imidazoleglycerol 99.1 1E-09 2.2E-14 94.4 11.7 135 17-168 80-230 (256)
93 PLN02535 glycolate oxidase 99.1 2.7E-09 5.8E-14 99.6 14.9 159 8-175 123-315 (364)
94 PRK01130 N-acetylmannosamine-6 99.1 2.9E-09 6.2E-14 93.2 13.9 121 28-172 83-207 (221)
95 TIGR00343 pyridoxal 5'-phospha 99.0 1.7E-08 3.7E-13 90.0 17.6 49 123-172 183-233 (287)
96 cd04727 pdxS PdxS is a subunit 99.0 4.6E-09 1E-13 93.5 13.4 125 23-173 77-231 (283)
97 TIGR00734 hisAF_rel hisA/hisF 99.0 1.4E-08 3E-13 89.0 16.1 106 54-173 108-219 (221)
98 TIGR02129 hisA_euk phosphoribo 99.0 1.1E-08 2.5E-13 90.6 14.9 143 10-172 76-237 (253)
99 PLN02617 imidazole glycerol ph 98.9 1.8E-08 4E-13 98.6 14.9 149 11-168 315-513 (538)
100 cd03332 LMO_FMN L-Lactate 2-mo 98.9 2.4E-08 5.3E-13 93.8 14.8 155 8-171 137-341 (383)
101 cd00945 Aldolase_Class_I Class 98.9 6.4E-08 1.4E-12 82.3 16.0 141 8-167 48-201 (201)
102 PLN02979 glycolate oxidase 98.9 3E-08 6.5E-13 92.0 14.8 156 8-172 120-312 (366)
103 PRK06843 inosine 5-monophospha 98.9 4E-08 8.7E-13 92.7 15.6 135 17-174 149-292 (404)
104 PRK11197 lldD L-lactate dehydr 98.9 4.2E-08 9.2E-13 92.0 15.5 96 68-172 237-334 (381)
105 TIGR03572 WbuZ glycosyl amidat 98.9 7.9E-09 1.7E-13 91.0 10.1 89 90-182 30-118 (232)
106 cd00331 IGPS Indole-3-glycerol 98.9 7.2E-08 1.6E-12 84.1 16.0 139 8-178 72-212 (217)
107 PF01070 FMN_dh: FMN-dependent 98.9 1.9E-08 4.2E-13 94.0 13.1 153 9-172 110-314 (356)
108 COG0107 HisF Imidazoleglycerol 98.9 5.2E-09 1.1E-13 90.1 8.5 90 88-181 28-117 (256)
109 PLN02274 inosine-5'-monophosph 98.9 4.9E-08 1.1E-12 95.2 16.4 143 8-172 235-385 (505)
110 PLN02493 probable peroxisomal 98.9 3.9E-08 8.5E-13 91.8 14.6 156 8-172 121-313 (367)
111 PTZ00314 inosine-5'-monophosph 98.9 6.3E-08 1.4E-12 94.3 15.9 142 9-172 229-378 (495)
112 cd04728 ThiG Thiazole synthase 98.9 1E-07 2.2E-12 83.5 14.8 134 18-172 73-209 (248)
113 cd03315 MLE_like Muconate lact 98.8 2.6E-07 5.6E-12 83.0 17.7 134 7-166 73-209 (265)
114 TIGR01302 IMP_dehydrog inosine 98.8 1.2E-07 2.6E-12 91.6 16.5 142 15-178 218-367 (450)
115 PRK00748 1-(5-phosphoribosyl)- 98.8 2.3E-08 4.9E-13 88.0 9.9 89 90-182 30-118 (233)
116 cd02808 GltS_FMN Glutamate syn 98.8 6.6E-08 1.4E-12 91.7 13.5 111 60-174 197-321 (392)
117 cd03316 MR_like Mandelate race 98.8 1.5E-07 3.3E-12 88.0 15.6 141 7-167 125-270 (357)
118 PRK13585 1-(5-phosphoribosyl)- 98.7 5E-08 1.1E-12 86.4 9.7 89 90-182 32-120 (241)
119 PRK07695 transcriptional regul 98.7 6E-07 1.3E-11 77.4 15.9 80 94-175 106-185 (201)
120 TIGR00262 trpA tryptophan synt 98.7 2.9E-07 6.4E-12 82.4 14.4 158 10-171 11-231 (256)
121 PRK04128 1-(5-phosphoribosyl)- 98.7 1.8E-07 3.9E-12 82.4 12.8 132 13-174 76-218 (228)
122 PRK00208 thiG thiazole synthas 98.7 5.1E-07 1.1E-11 79.3 15.1 134 18-172 73-209 (250)
123 CHL00200 trpA tryptophan synth 98.7 4.8E-07 1E-11 81.2 14.7 159 10-172 16-236 (263)
124 PRK14024 phosphoribosyl isomer 98.7 8.3E-08 1.8E-12 85.2 9.7 87 91-182 33-119 (241)
125 PF03060 NMO: Nitronate monoox 98.7 6.8E-07 1.5E-11 83.0 15.9 82 93-175 146-227 (330)
126 cd04724 Tryptophan_synthase_al 98.7 4.6E-07 1E-11 80.5 13.9 146 19-171 12-219 (242)
127 PRK01033 imidazole glycerol ph 98.7 1.1E-07 2.4E-12 85.3 10.0 89 90-182 30-118 (258)
128 PLN02591 tryptophan synthase 98.7 8.3E-07 1.8E-11 79.0 15.3 149 19-171 14-222 (250)
129 PRK04128 1-(5-phosphoribosyl)- 98.7 9.5E-08 2.1E-12 84.1 9.2 86 91-182 31-116 (228)
130 PRK13587 1-(5-phosphoribosyl)- 98.7 1.2E-07 2.5E-12 83.9 9.5 89 90-182 31-120 (234)
131 PRK05567 inosine 5'-monophosph 98.7 6.3E-07 1.4E-11 87.4 15.4 140 11-172 218-365 (486)
132 TIGR01303 IMP_DH_rel_1 IMP deh 98.7 3.7E-07 8.1E-12 88.4 13.6 140 9-171 213-361 (475)
133 COG0214 SNZ1 Pyridoxine biosyn 98.7 2.2E-07 4.7E-12 80.2 10.4 118 43-172 50-242 (296)
134 TIGR01769 GGGP geranylgeranylg 98.7 1.8E-06 3.8E-11 74.6 16.2 70 92-167 136-205 (205)
135 TIGR01163 rpe ribulose-phospha 98.7 6.2E-07 1.4E-11 77.4 13.4 147 12-178 2-204 (210)
136 TIGR01305 GMP_reduct_1 guanosi 98.6 1E-06 2.2E-11 80.7 15.1 138 10-171 97-245 (343)
137 TIGR01304 IMP_DH_rel_2 IMP deh 98.6 4.7E-07 1E-11 84.8 12.9 138 20-175 141-292 (369)
138 PRK00507 deoxyribose-phosphate 98.6 1.3E-06 2.9E-11 76.4 14.4 124 26-169 80-210 (221)
139 PRK07107 inosine 5-monophospha 98.6 1.1E-06 2.3E-11 85.8 14.7 130 21-172 242-386 (502)
140 PF03437 BtpA: BtpA family; I 98.6 2.2E-06 4.8E-11 76.3 15.3 155 8-179 80-239 (254)
141 PRK05096 guanosine 5'-monophos 98.6 1.2E-06 2.6E-11 80.2 13.8 138 11-173 99-248 (346)
142 PRK07807 inosine 5-monophospha 98.6 8.4E-07 1.8E-11 86.0 13.6 141 11-175 217-367 (479)
143 PF00478 IMPDH: IMP dehydrogen 98.6 4.6E-07 9.9E-12 84.1 11.0 137 11-172 99-245 (352)
144 TIGR00007 phosphoribosylformim 98.6 3.9E-07 8.5E-12 80.1 10.0 89 90-182 28-116 (230)
145 KOG1606 Stationary phase-induc 98.6 3.2E-07 6.9E-12 78.1 8.7 126 43-180 51-251 (296)
146 PRK08649 inosine 5-monophospha 98.6 1.6E-06 3.5E-11 81.4 14.3 140 20-177 140-295 (368)
147 PRK00278 trpC indole-3-glycero 98.6 5.7E-06 1.2E-10 74.3 17.2 105 60-178 145-251 (260)
148 PF01645 Glu_synthase: Conserv 98.6 5.9E-07 1.3E-11 83.9 11.1 110 59-172 185-308 (368)
149 PRK14114 1-(5-phosphoribosyl)- 98.6 3.8E-07 8.2E-12 80.9 9.4 87 90-181 30-116 (241)
150 PRK13111 trpA tryptophan synth 98.5 2.6E-06 5.7E-11 76.3 14.8 157 10-171 13-232 (258)
151 cd00429 RPE Ribulose-5-phospha 98.5 2.8E-06 6.1E-11 73.2 14.3 152 10-178 1-205 (211)
152 COG3010 NanE Putative N-acetyl 98.5 3.3E-06 7.1E-11 71.8 14.0 123 26-175 91-216 (229)
153 PRK07226 fructose-bisphosphate 98.5 2.7E-06 5.8E-11 76.7 14.3 145 8-176 73-240 (267)
154 PF00977 His_biosynth: Histidi 98.5 1.8E-07 3.9E-12 82.4 6.5 89 90-182 29-117 (229)
155 TIGR01768 GGGP-family geranylg 98.5 4E-06 8.7E-11 73.2 14.2 57 123-180 164-221 (223)
156 COG0106 HisA Phosphoribosylfor 98.5 6.2E-07 1.3E-11 78.5 9.0 89 90-182 31-119 (241)
157 cd04743 NPD_PKS 2-Nitropropane 98.5 6.7E-06 1.5E-10 75.5 15.8 140 7-176 54-211 (320)
158 PLN02446 (5-phosphoribosyl)-5- 98.5 6.9E-07 1.5E-11 79.6 9.0 84 90-182 43-130 (262)
159 TIGR01949 AroFGH_arch predicte 98.5 4.6E-06 9.9E-11 74.8 14.1 147 7-178 69-238 (258)
160 PRK08883 ribulose-phosphate 3- 98.5 4.5E-06 9.7E-11 73.1 13.7 146 11-175 2-203 (220)
161 KOG1799 Dihydropyrimidine dehy 98.4 1.1E-07 2.4E-12 86.2 3.3 153 18-174 215-392 (471)
162 TIGR00259 thylakoid_BtpA membr 98.4 1.6E-05 3.4E-10 71.0 16.8 150 8-175 79-234 (257)
163 TIGR02129 hisA_euk phosphoribo 98.4 1E-06 2.2E-11 78.3 9.1 79 93-182 41-123 (253)
164 PLN02334 ribulose-phosphate 3- 98.4 1.6E-05 3.4E-10 70.1 16.5 143 7-177 64-212 (229)
165 cd00958 DhnA Class I fructose- 98.4 1E-05 2.2E-10 71.4 14.8 130 21-177 76-224 (235)
166 TIGR03128 RuMP_HxlA 3-hexulose 98.4 3.3E-05 7.1E-10 66.6 17.5 140 10-175 54-194 (206)
167 TIGR00126 deoC deoxyribose-pho 98.4 7.5E-06 1.6E-10 71.1 13.2 129 22-168 72-205 (211)
168 KOG0538 Glycolate oxidase [Ene 98.4 1.5E-06 3.2E-11 78.0 8.9 105 60-173 207-313 (363)
169 cd02812 PcrB_like PcrB_like pr 98.4 2E-06 4.2E-11 75.0 9.4 84 88-180 133-217 (219)
170 PRK13586 1-(5-phosphoribosyl)- 98.4 2E-06 4.3E-11 75.9 9.6 88 90-182 30-117 (232)
171 PLN02617 imidazole glycerol ph 98.4 1.5E-06 3.3E-11 85.2 9.5 92 90-182 267-381 (538)
172 PRK04169 geranylgeranylglycery 98.4 2.3E-05 4.9E-10 69.0 15.4 52 123-175 169-221 (232)
173 TIGR01919 hisA-trpF 1-(5-phosp 98.3 3E-06 6.4E-11 75.3 9.5 88 90-182 31-118 (243)
174 cd04723 HisA_HisF Phosphoribos 98.3 3.1E-06 6.8E-11 74.7 9.3 87 90-182 35-121 (233)
175 cd04726 KGPDC_HPS 3-Keto-L-gul 98.3 6.8E-05 1.5E-09 64.3 16.9 141 8-175 53-194 (202)
176 PF04481 DUF561: Protein of un 98.3 1.9E-05 4.1E-10 67.8 12.5 148 8-170 61-217 (242)
177 COG2070 Dioxygenases related t 98.2 6.4E-06 1.4E-10 76.5 9.8 82 93-175 137-221 (336)
178 COG0159 TrpA Tryptophan syntha 98.2 6.7E-05 1.4E-09 66.9 15.5 150 19-171 29-237 (265)
179 cd00959 DeoC 2-deoxyribose-5-p 98.2 2.8E-05 6E-10 67.3 12.9 121 26-164 75-200 (203)
180 COG0274 DeoC Deoxyribose-phosp 98.2 2.1E-05 4.6E-10 68.1 11.9 134 17-168 72-213 (228)
181 PF00290 Trp_syntA: Tryptophan 98.2 2.6E-05 5.6E-10 69.8 12.7 157 10-171 11-230 (259)
182 COG1304 idi Isopentenyl diphos 98.2 2.7E-06 5.9E-11 79.4 6.6 105 59-172 201-307 (360)
183 PRK07028 bifunctional hexulose 98.2 0.00019 4E-09 69.1 19.3 103 64-175 96-198 (430)
184 cd00564 TMP_TenI Thiamine mono 98.2 1.4E-05 3E-10 67.7 10.3 82 94-177 106-188 (196)
185 PF05690 ThiG: Thiazole biosyn 98.2 7.7E-05 1.7E-09 65.0 14.7 146 7-172 61-209 (247)
186 PRK06806 fructose-bisphosphate 98.2 5.8E-05 1.3E-09 68.5 14.4 165 7-174 41-237 (281)
187 cd04742 NPD_FabD 2-Nitropropan 98.2 6.5E-05 1.4E-09 71.4 15.0 81 93-175 166-256 (418)
188 PF01791 DeoC: DeoC/LacD famil 98.2 1.4E-05 3.1E-10 70.5 10.0 134 23-172 79-235 (236)
189 PRK05283 deoxyribose-phosphate 98.1 3E-05 6.6E-10 69.0 11.6 130 22-176 85-226 (257)
190 COG0434 SgcQ Predicted TIM-bar 98.1 6.4E-05 1.4E-09 65.5 13.1 152 7-173 84-238 (263)
191 CHL00162 thiG thiamin biosynth 98.1 0.0001 2.3E-09 64.9 14.5 134 18-172 81-223 (267)
192 PTZ00170 D-ribulose-5-phosphat 98.1 9.7E-05 2.1E-09 65.1 14.5 149 10-175 8-209 (228)
193 PRK09140 2-dehydro-3-deoxy-6-p 98.1 0.00025 5.4E-09 61.5 16.5 150 7-174 8-186 (206)
194 TIGR00734 hisAF_rel hisA/hisF 98.1 1.7E-05 3.7E-10 69.5 8.9 86 90-181 36-122 (221)
195 PRK00043 thiE thiamine-phospha 98.1 2.9E-05 6.3E-10 67.0 9.9 78 96-175 117-196 (212)
196 COG0036 Rpe Pentose-5-phosphat 98.0 0.00017 3.7E-09 62.5 13.8 153 9-178 4-208 (220)
197 PRK05581 ribulose-phosphate 3- 98.0 0.00027 5.8E-09 61.4 15.3 140 9-178 62-209 (220)
198 PRK08005 epimerase; Validated 98.0 0.0003 6.5E-09 61.1 15.2 148 11-175 3-199 (210)
199 cd00452 KDPG_aldolase KDPG and 98.0 0.00019 4.2E-09 61.3 13.8 144 8-171 3-175 (190)
200 PF00218 IGPS: Indole-3-glycer 98.0 0.00013 2.9E-09 65.0 13.0 57 123-180 193-251 (254)
201 cd03329 MR_like_4 Mandelate ra 98.0 0.0003 6.5E-09 66.3 15.9 124 19-166 143-270 (368)
202 PRK08745 ribulose-phosphate 3- 98.0 0.00037 8E-09 61.1 15.2 146 11-175 6-207 (223)
203 PRK13307 bifunctional formalde 98.0 0.00053 1.1E-08 64.9 17.2 140 8-175 226-366 (391)
204 COG0352 ThiE Thiamine monophos 98.0 3.7E-05 8E-10 66.7 8.7 85 93-179 114-198 (211)
205 cd03321 mandelate_racemase Man 98.0 0.0002 4.3E-09 67.1 14.4 134 8-166 130-266 (355)
206 cd00405 PRAI Phosphoribosylant 98.0 0.00017 3.6E-09 62.3 12.6 132 17-176 59-190 (203)
207 PRK13957 indole-3-glycerol-pho 97.9 0.00031 6.8E-09 62.3 14.1 135 29-180 70-243 (247)
208 PRK07565 dihydroorotate dehydr 97.9 0.00021 4.6E-09 66.4 13.4 106 61-167 86-197 (334)
209 TIGR01859 fruc_bis_ald_ fructo 97.9 0.00062 1.3E-08 61.8 15.8 163 7-171 39-234 (282)
210 TIGR02814 pfaD_fam PfaD family 97.9 0.00051 1.1E-08 65.8 15.4 78 96-175 174-261 (444)
211 PRK02615 thiamine-phosphate py 97.9 0.00011 2.4E-09 68.4 10.5 78 96-175 253-330 (347)
212 COG1646 Predicted phosphate-bi 97.8 0.0003 6.4E-09 61.2 11.8 141 23-180 30-233 (240)
213 TIGR00693 thiE thiamine-phosph 97.8 0.00018 3.8E-09 61.5 10.1 77 97-175 110-188 (196)
214 cd03325 D-galactonate_dehydrat 97.8 0.0007 1.5E-08 63.4 14.5 144 7-167 111-257 (352)
215 COG2022 ThiG Uncharacterized e 97.8 0.00094 2E-08 58.1 13.8 134 17-171 79-215 (262)
216 cd00377 ICL_PEPM Members of th 97.8 0.0013 2.7E-08 58.6 15.1 147 8-171 69-230 (243)
217 cd03328 MR_like_3 Mandelate ra 97.8 0.00076 1.6E-08 63.2 14.3 122 19-166 138-264 (352)
218 PRK06801 hypothetical protein; 97.7 0.0012 2.6E-08 60.0 14.9 161 7-171 41-237 (286)
219 PRK06512 thiamine-phosphate py 97.7 0.00026 5.6E-09 62.1 9.9 78 96-176 124-201 (221)
220 PF02581 TMP-TENI: Thiamine mo 97.7 0.00016 3.4E-09 61.3 8.3 73 96-170 108-180 (180)
221 PRK11840 bifunctional sulfur c 97.7 0.0018 3.9E-08 59.4 15.6 134 18-172 147-283 (326)
222 KOG2334 tRNA-dihydrouridine sy 97.7 9.6E-06 2.1E-10 75.7 0.7 133 37-178 290-422 (477)
223 PRK04302 triosephosphate isome 97.7 0.0032 6.8E-08 55.2 16.2 107 63-178 102-213 (223)
224 PRK11750 gltB glutamate syntha 97.7 0.0003 6.6E-09 75.3 11.3 112 60-175 979-1104(1485)
225 PRK07315 fructose-bisphosphate 97.7 0.0015 3.3E-08 59.6 14.4 161 7-173 41-238 (293)
226 cd03324 rTSbeta_L-fuconate_deh 97.7 0.0016 3.5E-08 62.4 15.2 124 17-166 194-323 (415)
227 PRK14017 galactonate dehydrata 97.7 0.0015 3.2E-08 61.9 14.9 144 7-167 112-258 (382)
228 PRK06552 keto-hydroxyglutarate 97.7 0.0017 3.7E-08 56.6 14.1 145 8-171 12-187 (213)
229 PRK13802 bifunctional indole-3 97.7 0.0017 3.7E-08 65.7 15.9 141 24-180 73-253 (695)
230 COG4948 L-alanine-DL-glutamate 97.6 0.0013 2.8E-08 62.0 14.0 123 19-166 143-268 (372)
231 PRK09722 allulose-6-phosphate 97.6 0.0019 4.1E-08 56.9 13.8 146 10-172 4-203 (229)
232 cd03320 OSBS o-Succinylbenzoat 97.6 0.0024 5.2E-08 57.3 14.6 133 7-166 71-205 (263)
233 PRK13397 3-deoxy-7-phosphohept 97.6 0.0029 6.3E-08 56.3 14.7 110 53-168 104-220 (250)
234 PLN02460 indole-3-glycerol-pho 97.6 0.0029 6.3E-08 58.5 15.0 136 30-181 149-331 (338)
235 cd03326 MR_like_1 Mandelate ra 97.6 0.0027 5.9E-08 60.2 15.3 124 18-166 159-289 (385)
236 PRK07455 keto-hydroxyglutarate 97.6 0.0025 5.4E-08 54.4 13.5 146 8-172 11-185 (187)
237 cd04739 DHOD_like Dihydroorota 97.6 0.0075 1.6E-07 55.9 17.7 105 62-167 85-195 (325)
238 cd03322 rpsA The starvation se 97.6 0.0031 6.7E-08 59.3 15.2 126 8-166 115-243 (361)
239 cd03327 MR_like_2 Mandelate ra 97.5 0.0039 8.4E-08 58.1 15.6 140 8-166 108-251 (341)
240 PF00834 Ribul_P_3_epim: Ribul 97.5 0.00063 1.4E-08 58.8 9.3 142 11-173 2-200 (201)
241 PRK15072 bifunctional D-altron 97.5 0.0032 6.8E-08 60.2 14.7 142 15-166 123-286 (404)
242 PRK03512 thiamine-phosphate py 97.5 0.001 2.2E-08 57.9 10.3 81 96-178 115-197 (211)
243 TIGR01927 menC_gamma/gm+ o-suc 97.5 0.0055 1.2E-07 56.3 15.4 129 10-166 102-235 (307)
244 TIGR02534 mucon_cyclo muconate 97.5 0.0066 1.4E-07 57.2 16.3 134 8-166 130-267 (368)
245 PF09370 TIM-br_sig_trns: TIM- 97.5 0.0009 2E-08 59.5 9.6 151 7-170 80-249 (268)
246 TIGR01182 eda Entner-Doudoroff 97.5 0.0096 2.1E-07 51.5 15.7 133 8-175 7-184 (204)
247 cd03318 MLE Muconate Lactonizi 97.5 0.0079 1.7E-07 56.5 16.6 133 9-166 132-268 (365)
248 PRK06852 aldolase; Validated 97.4 0.005 1.1E-07 56.3 13.9 105 64-175 156-273 (304)
249 cd03323 D-glucarate_dehydratas 97.4 0.0062 1.3E-07 58.0 15.2 120 19-166 168-290 (395)
250 PRK08999 hypothetical protein; 97.4 0.001 2.2E-08 61.0 9.5 73 96-170 239-311 (312)
251 PRK08227 autoinducer 2 aldolas 97.4 0.0054 1.2E-07 55.1 13.6 143 7-175 73-234 (264)
252 PF01884 PcrB: PcrB family; I 97.4 0.00023 4.9E-09 62.5 4.5 47 128-175 173-219 (230)
253 PRK14057 epimerase; Provisiona 97.4 0.0076 1.6E-07 53.7 14.2 145 8-175 19-229 (254)
254 COG0269 SgbH 3-hexulose-6-phos 97.3 0.012 2.6E-07 50.9 14.5 142 8-175 56-200 (217)
255 cd00331 IGPS Indole-3-glycerol 97.3 0.0014 3E-08 57.1 9.0 78 88-172 29-106 (217)
256 PLN02535 glycolate oxidase 97.3 0.0038 8.2E-08 58.6 12.3 43 123-167 209-251 (364)
257 TIGR02320 PEP_mutase phosphoen 97.3 0.021 4.5E-07 52.0 16.7 150 8-171 78-244 (285)
258 PRK09427 bifunctional indole-3 97.3 0.0084 1.8E-07 58.0 14.8 134 31-181 80-252 (454)
259 TIGR01361 DAHP_synth_Bsub phos 97.3 0.006 1.3E-07 54.8 12.9 111 54-170 115-232 (260)
260 cd06556 ICL_KPHMT Members of t 97.3 0.0048 1E-07 54.7 12.0 115 9-167 74-209 (240)
261 cd00408 DHDPS-like Dihydrodipi 97.3 0.0074 1.6E-07 54.5 13.5 126 18-157 15-149 (281)
262 PRK08091 ribulose-phosphate 3- 97.2 0.031 6.7E-07 49.2 16.6 138 8-175 68-215 (228)
263 PLN02979 glycolate oxidase 97.2 0.0047 1E-07 57.8 12.1 43 123-167 209-251 (366)
264 PRK02714 O-succinylbenzoate sy 97.2 0.023 5E-07 52.5 16.5 131 9-166 110-246 (320)
265 TIGR02317 prpB methylisocitrat 97.2 0.017 3.7E-07 52.5 14.8 151 7-171 72-233 (285)
266 PRK08185 hypothetical protein; 97.2 0.023 4.9E-07 51.6 15.5 158 7-170 36-231 (283)
267 TIGR01928 menC_lowGC/arch o-su 97.2 0.017 3.6E-07 53.5 15.1 130 8-166 121-252 (324)
268 PF01680 SOR_SNZ: SOR/SNZ fami 97.2 0.0046 9.9E-08 51.7 9.9 115 27-164 27-142 (208)
269 COG0069 GltB Glutamate synthas 97.2 0.002 4.4E-08 62.0 8.9 108 60-172 286-408 (485)
270 cd04727 pdxS PdxS is a subunit 97.2 0.0092 2E-07 53.7 12.5 116 27-165 21-137 (283)
271 PLN02493 probable peroxisomal 97.1 0.0064 1.4E-07 57.1 11.9 43 123-167 210-252 (367)
272 PRK05848 nicotinate-nucleotide 97.1 0.0052 1.1E-07 55.5 10.8 91 64-175 168-265 (273)
273 PRK12595 bifunctional 3-deoxy- 97.1 0.0088 1.9E-07 56.2 12.6 115 54-177 208-330 (360)
274 cd03317 NAAAR N-acylamino acid 97.1 0.021 4.5E-07 53.4 15.2 130 8-166 125-257 (354)
275 PRK05437 isopentenyl pyrophosp 97.1 0.0075 1.6E-07 56.6 12.1 111 55-167 99-217 (352)
276 PRK12290 thiE thiamine-phospha 97.1 0.0042 9E-08 59.3 10.3 78 96-175 313-400 (437)
277 COG1830 FbaB DhnA-type fructos 97.1 0.015 3.2E-07 51.9 13.0 142 8-175 77-245 (265)
278 PLN02898 HMP-P kinase/thiamin- 97.1 0.0036 7.9E-08 61.4 10.2 78 96-175 403-483 (502)
279 KOG2550 IMP dehydrogenase/GMP 97.1 0.0084 1.8E-07 56.3 11.6 133 13-170 244-386 (503)
280 KOG0623 Glutamine amidotransfe 97.1 0.0019 4.1E-08 59.2 7.2 72 91-165 442-513 (541)
281 PF13714 PEP_mutase: Phosphoen 97.1 0.0096 2.1E-07 52.8 11.7 143 8-171 69-223 (238)
282 PRK00278 trpC indole-3-glycero 97.1 0.013 2.8E-07 52.7 12.7 130 8-167 49-187 (260)
283 cd02809 alpha_hydroxyacid_oxid 97.1 0.011 2.4E-07 54.1 12.5 85 77-167 116-200 (299)
284 PRK05718 keto-hydroxyglutarate 97.0 0.017 3.6E-07 50.4 12.9 151 8-177 14-192 (212)
285 TIGR03247 glucar-dehydr glucar 97.0 0.019 4.2E-07 55.4 14.6 122 19-166 180-308 (441)
286 PRK13398 3-deoxy-7-phosphohept 97.0 0.011 2.4E-07 53.2 12.1 111 53-170 116-234 (266)
287 cd04740 DHOD_1B_like Dihydroor 97.0 0.032 6.9E-07 50.8 15.1 101 65-166 78-185 (296)
288 PRK12858 tagatose 1,6-diphosph 97.0 0.039 8.4E-07 51.5 15.7 135 29-175 115-284 (340)
289 PRK02227 hypothetical protein; 97.0 0.054 1.2E-06 47.7 15.3 160 21-215 8-180 (238)
290 TIGR01362 KDO8P_synth 3-deoxy- 97.0 0.048 1E-06 48.5 15.0 111 54-175 99-227 (258)
291 PF04476 DUF556: Protein of un 97.0 0.071 1.5E-06 46.8 15.8 160 21-215 8-180 (235)
292 cd00381 IMPDH IMPDH: The catal 96.9 0.0096 2.1E-07 55.2 11.2 94 61-167 69-163 (325)
293 TIGR02319 CPEP_Pphonmut carbox 96.9 0.047 1E-06 49.9 15.3 150 7-171 76-237 (294)
294 PRK13813 orotidine 5'-phosphat 96.9 0.021 4.6E-07 49.5 12.7 149 9-176 4-201 (215)
295 COG0134 TrpC Indole-3-glycerol 96.9 0.0065 1.4E-07 54.0 9.4 115 65-180 96-249 (254)
296 PRK12457 2-dehydro-3-deoxyphos 96.9 0.058 1.3E-06 48.5 15.3 113 54-175 113-243 (281)
297 PRK07998 gatY putative fructos 96.9 0.033 7.2E-07 50.5 14.0 161 7-171 41-233 (283)
298 TIGR02151 IPP_isom_2 isopenten 96.9 0.014 3.1E-07 54.2 12.0 111 55-167 92-210 (333)
299 COG0329 DapA Dihydrodipicolina 96.9 0.037 8E-07 50.8 14.5 126 18-157 22-156 (299)
300 cd00377 ICL_PEPM Members of th 96.9 0.02 4.4E-07 50.8 12.4 150 27-181 22-192 (243)
301 PRK13396 3-deoxy-7-phosphohept 96.9 0.031 6.6E-07 52.3 13.9 110 53-168 190-307 (352)
302 TIGR01858 tag_bisphos_ald clas 96.9 0.036 7.8E-07 50.3 14.0 162 7-171 39-234 (282)
303 PRK11197 lldD L-lactate dehydr 96.9 0.014 3E-07 55.2 11.7 43 123-167 231-273 (381)
304 PRK11320 prpB 2-methylisocitra 96.9 0.073 1.6E-06 48.6 15.9 150 7-171 77-238 (292)
305 cd00945 Aldolase_Class_I Class 96.9 0.032 7E-07 47.0 13.0 129 19-169 11-151 (201)
306 cd03332 LMO_FMN L-Lactate 2-mo 96.9 0.016 3.5E-07 54.8 12.0 43 123-167 239-281 (383)
307 cd04737 LOX_like_FMN L-Lactate 96.8 0.013 2.9E-07 54.8 11.2 41 124-166 208-248 (351)
308 PRK00230 orotidine 5'-phosphat 96.8 0.017 3.6E-07 51.0 11.3 81 10-111 4-88 (230)
309 PRK02901 O-succinylbenzoate sy 96.8 0.081 1.8E-06 49.1 16.3 132 10-167 80-214 (327)
310 PRK07428 nicotinate-nucleotide 96.8 0.015 3.2E-07 53.0 11.0 95 64-176 182-280 (288)
311 PRK12738 kbaY tagatose-bisphos 96.8 0.051 1.1E-06 49.4 14.4 162 7-171 41-236 (286)
312 PF00478 IMPDH: IMP dehydrogen 96.8 0.0082 1.8E-07 56.1 9.2 72 90-169 107-179 (352)
313 PF04131 NanE: Putative N-acet 96.8 0.021 4.5E-07 48.6 10.8 111 24-166 2-118 (192)
314 PRK12737 gatY tagatose-bisphos 96.8 0.053 1.2E-06 49.3 14.3 162 7-171 41-236 (284)
315 PRK06015 keto-hydroxyglutarate 96.8 0.041 8.9E-07 47.5 12.8 147 8-171 3-176 (201)
316 PRK08673 3-deoxy-7-phosphohept 96.8 0.052 1.1E-06 50.5 14.3 112 52-170 181-300 (335)
317 PRK03620 5-dehydro-4-deoxygluc 96.7 0.051 1.1E-06 49.9 14.1 123 19-156 26-154 (303)
318 PRK07709 fructose-bisphosphate 96.7 0.069 1.5E-06 48.6 14.7 162 7-170 41-236 (285)
319 TIGR02708 L_lactate_ox L-lacta 96.7 0.023 5E-07 53.5 11.8 42 124-167 215-256 (367)
320 TIGR00078 nadC nicotinate-nucl 96.7 0.02 4.3E-07 51.6 11.0 89 66-175 166-258 (265)
321 cd00952 CHBPH_aldolase Trans-o 96.7 0.058 1.3E-06 49.6 14.2 126 18-157 26-161 (309)
322 PRK08072 nicotinate-nucleotide 96.7 0.021 4.5E-07 51.8 11.0 68 94-175 199-268 (277)
323 PRK09195 gatY tagatose-bisphos 96.7 0.073 1.6E-06 48.4 14.5 162 7-171 41-236 (284)
324 PLN02495 oxidoreductase, actin 96.7 0.02 4.4E-07 54.2 11.2 110 62-171 98-218 (385)
325 cd02922 FCB2_FMN Flavocytochro 96.7 0.037 8.1E-07 51.7 12.9 89 77-167 118-241 (344)
326 PRK05198 2-dehydro-3-deoxyphos 96.7 0.11 2.4E-06 46.4 14.9 111 54-175 107-235 (264)
327 TIGR03249 KdgD 5-dehydro-4-deo 96.6 0.067 1.5E-06 48.8 14.2 125 18-157 23-153 (296)
328 cd00950 DHDPS Dihydrodipicolin 96.6 0.05 1.1E-06 49.2 13.3 127 18-158 18-153 (284)
329 PRK05742 nicotinate-nucleotide 96.6 0.024 5.1E-07 51.4 10.9 68 94-175 200-269 (277)
330 PRK07114 keto-hydroxyglutarate 96.6 0.14 3.1E-06 44.8 15.5 150 8-175 14-196 (222)
331 PRK09517 multifunctional thiam 96.6 0.0079 1.7E-07 62.0 8.8 73 103-177 128-204 (755)
332 cd01568 QPRTase_NadC Quinolina 96.6 0.025 5.4E-07 51.1 11.0 66 96-175 194-263 (269)
333 PRK09250 fructose-bisphosphate 96.6 0.062 1.3E-06 49.9 13.6 156 7-175 124-326 (348)
334 COG2876 AroA 3-deoxy-D-arabino 96.5 0.035 7.6E-07 49.4 10.9 96 75-175 151-255 (286)
335 cd04736 MDH_FMN Mandelate dehy 96.5 0.037 8E-07 52.0 11.8 43 123-167 222-264 (361)
336 PRK12857 fructose-1,6-bisphosp 96.5 0.095 2.1E-06 47.7 14.2 162 7-171 41-236 (284)
337 PRK13957 indole-3-glycerol-pho 96.5 0.02 4.4E-07 50.9 9.6 76 90-172 61-136 (247)
338 PRK07084 fructose-bisphosphate 96.5 0.1 2.2E-06 48.1 14.4 149 7-156 47-236 (321)
339 cd00947 TBP_aldolase_IIB Tagat 96.5 0.1 2.2E-06 47.3 14.1 161 7-170 36-229 (276)
340 TIGR01305 GMP_reduct_1 guanosi 96.5 0.027 5.9E-07 52.0 10.4 97 61-167 80-178 (343)
341 PRK07259 dihydroorotate dehydr 96.5 0.039 8.5E-07 50.4 11.7 92 74-166 89-188 (301)
342 cd00951 KDGDH 5-dehydro-4-deox 96.5 0.12 2.5E-06 47.1 14.7 124 19-157 19-148 (289)
343 TIGR01306 GMP_reduct_2 guanosi 96.5 0.035 7.5E-07 51.3 11.2 101 56-167 62-165 (321)
344 PRK03170 dihydrodipicolinate s 96.5 0.092 2E-06 47.8 13.8 126 18-157 19-153 (292)
345 PRK05835 fructose-bisphosphate 96.5 0.12 2.6E-06 47.4 14.3 146 7-153 40-220 (307)
346 cd02811 IDI-2_FMN Isopentenyl- 96.4 0.045 9.7E-07 50.8 11.7 110 56-167 92-209 (326)
347 PRK08610 fructose-bisphosphate 96.4 0.13 2.9E-06 46.8 14.4 162 7-170 41-236 (286)
348 PF01081 Aldolase: KDPG and KH 96.4 0.017 3.7E-07 49.6 8.2 149 8-174 7-183 (196)
349 TIGR01502 B_methylAsp_ase meth 96.4 0.13 2.9E-06 49.1 15.0 146 6-166 162-326 (408)
350 TIGR00674 dapA dihydrodipicoli 96.4 0.091 2E-06 47.7 13.4 126 19-158 17-151 (285)
351 cd01572 QPRTase Quinolinate ph 96.4 0.016 3.4E-07 52.4 8.2 65 96-174 195-261 (268)
352 cd02810 DHOD_DHPD_FMN Dihydroo 96.3 0.11 2.3E-06 47.2 13.5 105 62-167 83-196 (289)
353 COG1411 Uncharacterized protei 96.3 0.028 6E-07 48.0 8.7 83 87-173 134-216 (229)
354 PRK06843 inosine 5-monophospha 96.3 0.067 1.5E-06 51.0 12.0 71 90-168 152-223 (404)
355 TIGR00167 cbbA ketose-bisphosp 96.3 0.16 3.5E-06 46.3 14.0 163 7-171 41-240 (288)
356 PF01070 FMN_dh: FMN-dependent 96.2 0.026 5.7E-07 53.0 9.0 42 124-167 212-253 (356)
357 TIGR01521 FruBisAldo_II_B fruc 96.2 0.16 3.4E-06 47.4 13.9 77 93-170 174-278 (347)
358 PTZ00314 inosine-5'-monophosph 96.2 0.037 8.1E-07 54.2 10.0 69 91-167 241-310 (495)
359 cd00954 NAL N-Acetylneuraminic 96.1 0.18 3.9E-06 45.8 13.9 126 18-157 18-154 (288)
360 cd04729 NanE N-acetylmannosami 96.1 0.21 4.6E-06 43.4 13.8 121 18-167 24-150 (219)
361 TIGR02313 HpaI-NOT-DapA 2,4-di 96.1 0.19 4.2E-06 45.8 14.0 125 19-157 19-153 (294)
362 PRK13306 ulaD 3-keto-L-gulonat 96.1 0.17 3.6E-06 44.2 12.7 143 8-175 56-199 (216)
363 TIGR00683 nanA N-acetylneurami 96.1 0.26 5.5E-06 45.0 14.5 126 18-157 18-154 (290)
364 cd00308 enolase_like Enolase-s 96.1 0.089 1.9E-06 46.0 11.1 92 65-166 81-174 (229)
365 PF01116 F_bP_aldolase: Fructo 96.1 0.14 3E-06 46.8 12.5 162 7-171 40-239 (287)
366 PRK05581 ribulose-phosphate 3- 96.0 0.32 7E-06 42.0 14.5 131 11-167 6-138 (220)
367 PRK05105 O-succinylbenzoate sy 96.0 0.3 6.5E-06 45.2 15.0 122 15-166 111-236 (322)
368 TIGR01182 eda Entner-Doudoroff 96.0 0.053 1.2E-06 46.9 9.3 82 87-181 17-98 (204)
369 PRK04147 N-acetylneuraminate l 96.0 0.23 5.1E-06 45.2 14.1 125 19-157 22-156 (293)
370 PLN02334 ribulose-phosphate 3- 96.0 0.49 1.1E-05 41.5 15.5 142 4-168 3-147 (229)
371 cd01573 modD_like ModD; Quinol 96.0 0.042 9.1E-07 49.7 8.8 63 96-169 196-260 (272)
372 COG2513 PrpB PEP phosphonomuta 95.9 0.46 9.9E-06 43.0 15.0 147 7-170 77-237 (289)
373 PRK05458 guanosine 5'-monophos 95.9 0.066 1.4E-06 49.6 9.9 100 56-167 65-168 (326)
374 PRK06015 keto-hydroxyglutarate 95.9 0.064 1.4E-06 46.3 9.2 89 79-181 6-94 (201)
375 PF01081 Aldolase: KDPG and KH 95.9 0.05 1.1E-06 46.7 8.5 83 87-182 17-99 (196)
376 PRK09196 fructose-1,6-bisphosp 95.9 0.2 4.3E-06 46.8 12.9 79 91-170 174-280 (347)
377 TIGR00284 dihydropteroate synt 95.9 0.11 2.4E-06 50.9 11.8 48 23-83 168-215 (499)
378 PLN03033 2-dehydro-3-deoxyphos 95.9 0.28 6.1E-06 44.2 13.4 111 54-175 113-246 (290)
379 PRK00311 panB 3-methyl-2-oxobu 95.9 0.26 5.7E-06 44.3 13.3 102 10-144 78-203 (264)
380 PRK08318 dihydropyrimidine deh 95.9 0.5 1.1E-05 45.3 16.2 154 9-166 15-199 (420)
381 PRK15440 L-rhamnonate dehydrat 95.8 0.09 1.9E-06 50.1 10.8 96 61-166 191-290 (394)
382 PRK13399 fructose-1,6-bisphosp 95.8 0.26 5.7E-06 46.0 13.5 78 92-170 175-280 (347)
383 PRK15129 L-Ala-D/L-Glu epimera 95.8 0.55 1.2E-05 43.4 15.7 126 9-166 119-246 (321)
384 TIGR01302 IMP_dehydrog inosine 95.8 0.041 8.8E-07 53.4 8.5 69 91-167 224-293 (450)
385 PRK13958 N-(5'-phosphoribosyl) 95.8 0.33 7.1E-06 42.1 13.2 61 104-170 123-185 (207)
386 COG0135 TrpF Phosphoribosylant 95.8 0.28 6.2E-06 42.5 12.6 133 15-175 59-191 (208)
387 PF00701 DHDPS: Dihydrodipicol 95.7 0.4 8.6E-06 43.5 14.3 146 6-181 68-218 (289)
388 TIGR02320 PEP_mutase phosphoen 95.7 0.14 3E-06 46.7 11.0 108 60-167 62-189 (285)
389 PF00701 DHDPS: Dihydrodipicol 95.7 0.2 4.3E-06 45.4 12.2 125 19-157 20-153 (289)
390 KOG3111 D-ribulose-5-phosphate 95.7 0.17 3.8E-06 43.0 10.7 149 10-175 6-205 (224)
391 cd06557 KPHMT-like Ketopantoat 95.7 0.31 6.8E-06 43.6 13.0 105 8-144 72-200 (254)
392 cd08210 RLP_RrRLP Ribulose bis 95.7 0.64 1.4E-05 43.8 15.6 142 6-167 123-284 (364)
393 PF01487 DHquinase_I: Type I 3 95.7 0.76 1.6E-05 40.0 15.2 134 13-167 2-150 (224)
394 TIGR03569 NeuB_NnaB N-acetylne 95.6 0.54 1.2E-05 43.7 14.8 108 41-162 108-218 (329)
395 PRK01222 N-(5'-phosphoribosyl) 95.6 0.87 1.9E-05 39.5 15.2 130 15-175 61-191 (210)
396 cd06557 KPHMT-like Ketopantoat 95.6 0.37 8.1E-06 43.1 13.0 126 27-166 25-177 (254)
397 cd00956 Transaldolase_FSA Tran 95.6 0.19 4E-06 43.8 10.9 128 8-167 51-185 (211)
398 PRK01130 N-acetylmannosamine-6 95.5 0.49 1.1E-05 41.1 13.6 128 11-167 9-146 (221)
399 PRK05265 pyridoxine 5'-phospha 95.5 0.29 6.4E-06 43.1 11.9 110 54-174 105-220 (239)
400 PRK09140 2-dehydro-3-deoxy-6-p 95.5 0.098 2.1E-06 45.3 8.9 88 78-179 11-99 (206)
401 PRK07535 methyltetrahydrofolat 95.5 0.3 6.5E-06 43.9 12.3 72 17-107 21-95 (261)
402 cd00953 KDG_aldolase KDG (2-ke 95.5 0.75 1.6E-05 41.6 15.0 126 16-157 15-147 (279)
403 PF01729 QRPTase_C: Quinolinat 95.5 0.11 2.3E-06 43.7 8.7 94 64-175 66-163 (169)
404 COG2513 PrpB PEP phosphonomuta 95.5 0.28 6E-06 44.4 11.8 149 27-182 31-199 (289)
405 COG5016 Pyruvate/oxaloacetate 95.4 2.5 5.5E-05 40.1 19.7 126 19-165 95-229 (472)
406 PLN02417 dihydrodipicolinate s 95.4 0.46 9.9E-06 43.1 13.4 124 18-157 19-151 (280)
407 cd00423 Pterin_binding Pterin 95.4 0.16 3.4E-06 45.5 10.2 79 18-107 21-100 (258)
408 TIGR01037 pyrD_sub1_fam dihydr 95.4 0.51 1.1E-05 43.0 13.8 106 61-167 75-189 (300)
409 PF03932 CutC: CutC family; I 95.4 0.66 1.4E-05 40.0 13.5 134 12-167 2-147 (201)
410 PF03932 CutC: CutC family; I 95.4 0.13 2.8E-06 44.4 9.2 125 18-164 66-196 (201)
411 cd04726 KGPDC_HPS 3-Keto-L-gul 95.4 1.2 2.5E-05 37.9 15.2 129 11-167 3-133 (202)
412 TIGR02317 prpB methylisocitrat 95.4 0.38 8.2E-06 43.8 12.6 149 27-181 26-193 (285)
413 PRK08385 nicotinate-nucleotide 95.3 0.17 3.7E-06 45.8 10.2 93 65-175 170-267 (278)
414 TIGR03128 RuMP_HxlA 3-hexulose 95.3 0.78 1.7E-05 39.2 14.0 126 11-167 2-133 (206)
415 COG0800 Eda 2-keto-3-deoxy-6-p 95.3 0.28 6.1E-06 42.4 10.9 79 87-178 22-100 (211)
416 PRK05096 guanosine 5'-monophos 95.3 0.16 3.5E-06 47.0 9.9 97 61-168 81-180 (346)
417 cd00452 KDPG_aldolase KDPG and 95.3 0.13 2.9E-06 43.7 8.9 81 87-180 13-93 (190)
418 PRK05718 keto-hydroxyglutarate 95.2 0.14 3E-06 44.6 9.0 85 83-181 21-105 (212)
419 PRK07107 inosine 5-monophospha 95.2 0.083 1.8E-06 51.9 8.4 72 90-168 241-313 (502)
420 cd06556 ICL_KPHMT Members of t 95.2 0.57 1.2E-05 41.6 13.0 138 27-181 25-187 (240)
421 TIGR01303 IMP_DH_rel_1 IMP deh 95.2 0.067 1.4E-06 52.2 7.7 70 91-168 225-295 (475)
422 PLN02274 inosine-5'-monophosph 95.2 0.084 1.8E-06 51.9 8.4 70 90-167 247-317 (505)
423 TIGR03586 PseI pseudaminic aci 95.2 0.7 1.5E-05 42.9 13.9 100 54-162 117-217 (327)
424 cd00003 PNPsynthase Pyridoxine 95.2 0.42 9.2E-06 42.0 11.7 114 53-174 101-218 (234)
425 TIGR00559 pdxJ pyridoxine 5'-p 95.2 0.47 1E-05 41.8 12.0 113 54-174 102-219 (237)
426 PRK11320 prpB 2-methylisocitra 95.1 0.25 5.4E-06 45.1 10.7 149 27-181 30-198 (292)
427 TIGR02321 Pphn_pyruv_hyd phosp 95.1 1.2 2.5E-05 40.8 15.1 147 8-170 75-238 (290)
428 COG4981 Enoyl reductase domain 95.1 0.1 2.2E-06 50.9 8.2 109 65-174 111-260 (717)
429 PLN02424 ketopantoate hydroxym 95.1 0.49 1.1E-05 43.8 12.3 96 18-144 110-224 (332)
430 COG0800 Eda 2-keto-3-deoxy-6-p 95.1 0.51 1.1E-05 40.9 11.7 119 8-165 12-131 (211)
431 COG1891 Uncharacterized protei 95.0 1.3 2.7E-05 37.4 13.4 161 21-216 8-181 (235)
432 PRK11572 copper homeostasis pr 95.0 0.62 1.3E-05 41.5 12.3 132 13-166 4-147 (248)
433 PRK08091 ribulose-phosphate 3- 94.9 1.4 3.1E-05 38.7 14.5 135 8-177 12-154 (228)
434 PF03740 PdxJ: Pyridoxal phosp 94.9 0.15 3.2E-06 45.0 8.2 116 51-174 100-221 (239)
435 PRK06552 keto-hydroxyglutarate 94.9 0.21 4.6E-06 43.5 9.1 82 87-181 22-106 (213)
436 PF04309 G3P_antiterm: Glycero 94.8 0.036 7.7E-07 46.7 4.0 69 90-170 104-172 (175)
437 TIGR02313 HpaI-NOT-DapA 2,4-di 94.8 0.16 3.4E-06 46.4 8.5 87 88-175 19-110 (294)
438 PRK05286 dihydroorotate dehydr 94.7 0.59 1.3E-05 43.7 12.3 106 64-170 124-248 (344)
439 PRK05567 inosine 5'-monophosph 94.7 0.15 3.2E-06 50.0 8.7 69 91-167 228-297 (486)
440 TIGR01334 modD putative molybd 94.7 0.33 7.1E-06 44.0 10.2 95 63-174 174-270 (277)
441 PRK06559 nicotinate-nucleotide 94.7 0.36 7.7E-06 44.0 10.4 90 65-175 184-277 (290)
442 cd02940 DHPD_FMN Dihydropyrimi 94.7 0.91 2E-05 41.5 13.3 106 62-167 84-200 (299)
443 PF13714 PEP_mutase: Phosphoen 94.7 0.48 1E-05 42.0 10.9 134 27-166 22-174 (238)
444 TIGR00222 panB 3-methyl-2-oxob 94.6 0.7 1.5E-05 41.5 12.0 94 19-144 90-202 (263)
445 PRK13397 3-deoxy-7-phosphohept 94.6 0.16 3.4E-06 45.4 7.8 91 88-182 27-120 (250)
446 PLN02363 phosphoribosylanthran 94.6 1.6 3.4E-05 39.2 14.2 52 123-175 185-236 (256)
447 PF00809 Pterin_bind: Pterin b 94.6 0.14 3.1E-06 44.4 7.4 72 25-107 24-96 (210)
448 cd08205 RuBisCO_IV_RLP Ribulos 94.6 1.4 2.9E-05 41.7 14.4 142 6-167 127-288 (367)
449 TIGR01740 pyrF orotidine 5'-ph 94.6 0.66 1.4E-05 40.2 11.5 46 66-112 40-85 (213)
450 cd00739 DHPS DHPS subgroup of 94.5 0.39 8.4E-06 43.1 10.2 82 19-111 22-105 (257)
451 TIGR02319 CPEP_Pphonmut carbox 94.5 0.52 1.1E-05 43.1 10.9 150 27-182 29-198 (294)
452 PRK01222 N-(5'-phosphoribosyl) 94.5 1.5 3.2E-05 38.0 13.4 127 12-168 4-132 (210)
453 PRK06106 nicotinate-nucleotide 94.5 0.52 1.1E-05 42.8 10.8 86 65-171 181-270 (281)
454 COG0329 DapA Dihydrodipicolina 94.4 0.21 4.5E-06 45.8 8.4 88 87-175 22-114 (299)
455 KOG0538 Glycolate oxidase [Ene 94.4 0.17 3.8E-06 46.0 7.5 42 124-167 210-251 (363)
456 PRK02412 aroD 3-dehydroquinate 94.4 2.9 6.3E-05 37.3 15.5 140 10-168 17-173 (253)
457 PRK07114 keto-hydroxyglutarate 94.4 0.63 1.4E-05 40.8 10.8 83 86-181 23-109 (222)
458 PRK04452 acetyl-CoA decarbonyl 94.3 0.63 1.4E-05 43.0 11.3 113 31-161 87-201 (319)
459 PF00793 DAHP_synth_1: DAHP sy 94.3 0.49 1.1E-05 42.7 10.5 111 52-168 112-235 (270)
460 PRK00311 panB 3-methyl-2-oxobu 94.2 1.6 3.4E-05 39.3 13.4 126 27-166 28-180 (264)
461 KOG4201 Anthranilate synthase 94.2 0.23 4.9E-06 43.1 7.5 72 96-173 199-272 (289)
462 cd00951 KDGDH 5-dehydro-4-deox 94.2 0.27 5.9E-06 44.7 8.6 85 88-174 19-108 (289)
463 PRK07455 keto-hydroxyglutarate 94.2 0.46 1E-05 40.4 9.5 72 87-168 21-92 (187)
464 PF02548 Pantoate_transf: Keto 94.1 1.1 2.3E-05 40.2 12.0 104 19-166 92-214 (261)
465 COG3010 NanE Putative N-acetyl 94.1 1.9 4E-05 37.3 12.7 116 18-165 30-152 (229)
466 PLN02424 ketopantoate hydroxym 94.0 1.2 2.7E-05 41.2 12.4 127 27-166 48-201 (332)
467 PRK06543 nicotinate-nucleotide 94.0 0.86 1.9E-05 41.4 11.3 90 65-175 180-273 (281)
468 PRK06978 nicotinate-nucleotide 94.0 0.66 1.4E-05 42.3 10.5 91 65-176 193-286 (294)
469 TIGR02321 Pphn_pyruv_hyd phosp 93.9 1 2.2E-05 41.1 11.7 151 27-182 28-200 (290)
470 PRK07896 nicotinate-nucleotide 93.9 0.75 1.6E-05 42.0 10.8 92 66-175 188-282 (289)
471 PLN02417 dihydrodipicolinate s 93.9 0.33 7.2E-06 44.0 8.5 87 88-175 20-111 (280)
472 PRK03620 5-dehydro-4-deoxygluc 93.9 0.31 6.8E-06 44.6 8.5 85 88-174 26-115 (303)
473 TIGR03326 rubisco_III ribulose 93.8 2.5 5.4E-05 40.5 14.6 141 6-169 141-307 (412)
474 COG1954 GlpP Glycerol-3-phosph 93.7 0.35 7.6E-06 40.4 7.5 63 92-166 110-172 (181)
475 COG0646 MetH Methionine syntha 93.7 1.2 2.6E-05 40.5 11.5 143 18-166 50-226 (311)
476 PRK09016 quinolinate phosphori 93.7 0.71 1.5E-05 42.2 10.2 90 65-175 196-288 (296)
477 TIGR00222 panB 3-methyl-2-oxob 93.7 2.2 4.8E-05 38.3 13.2 126 27-166 28-179 (263)
478 PLN02980 2-oxoglutarate decarb 93.7 2.1 4.6E-05 48.2 15.8 106 18-149 1089-1197(1655)
479 cd00952 CHBPH_aldolase Trans-o 93.6 0.37 8E-06 44.3 8.4 86 88-174 27-117 (309)
480 cd00740 MeTr MeTr subgroup of 93.6 1.9 4E-05 38.6 12.6 74 18-110 23-100 (252)
481 TIGR03151 enACPred_II putative 93.6 1.2 2.6E-05 41.0 11.7 90 60-166 46-135 (307)
482 cd08207 RLP_NonPhot Ribulose b 93.6 2.2 4.9E-05 40.8 13.8 140 6-168 140-302 (406)
483 PF00697 PRAI: N-(5'phosphorib 93.6 0.25 5.4E-06 42.4 6.8 142 13-176 1-185 (197)
484 PRK04147 N-acetylneuraminate l 93.5 0.42 9.1E-06 43.5 8.6 87 88-175 22-114 (293)
485 PRK15452 putative protease; Pr 93.4 4.1 8.8E-05 39.5 15.5 128 18-170 11-144 (443)
486 PRK07807 inosine 5-monophospha 93.2 0.42 9.1E-06 46.7 8.5 71 91-169 227-298 (479)
487 cd08209 RLP_DK-MTP-1-P-enolase 93.2 2.8 6.1E-05 39.9 13.8 142 6-169 121-287 (391)
488 PLN02716 nicotinate-nucleotide 93.2 0.8 1.7E-05 42.1 9.7 69 102-175 228-298 (308)
489 TIGR01036 pyrD_sub2 dihydrooro 93.2 1.4 3E-05 41.1 11.6 150 21-171 66-248 (335)
490 cd00405 PRAI Phosphoribosylant 93.2 2.5 5.4E-05 36.2 12.5 122 13-166 1-126 (203)
491 COG0191 Fba Fructose/tagatose 93.1 4 8.8E-05 37.0 13.8 161 7-169 41-236 (286)
492 COG0159 TrpA Tryptophan syntha 93.0 1.3 2.9E-05 39.7 10.7 103 66-168 6-130 (265)
493 cd00408 DHDPS-like Dihydrodipi 93.0 0.56 1.2E-05 42.2 8.5 86 88-174 16-106 (281)
494 PRK11613 folP dihydropteroate 93.0 0.57 1.2E-05 42.6 8.4 75 19-107 36-114 (282)
495 PRK09197 fructose-bisphosphate 92.9 1.3 2.9E-05 41.3 10.8 112 58-171 142-283 (350)
496 TIGR00683 nanA N-acetylneurami 92.8 0.65 1.4E-05 42.3 8.7 86 88-175 19-111 (290)
497 PRK06096 molybdenum transport 92.8 1.3 2.9E-05 40.2 10.6 88 64-169 176-266 (284)
498 cd04730 NPD_like 2-Nitropropan 92.8 2.6 5.7E-05 36.6 12.3 92 60-166 37-128 (236)
499 KOG4175 Tryptophan synthase al 92.7 3.4 7.3E-05 35.6 12.1 43 127-171 196-239 (268)
500 cd04722 TIM_phosphate_binding 92.7 0.65 1.4E-05 38.4 8.0 79 90-170 12-94 (200)
No 1
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-56 Score=399.83 Aligned_cols=257 Identities=49% Similarity=0.752 Sum_probs=230.3
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
+.++++|+|+|||++||||+.+.+||++++..+|+||||||||++.+++++||++|+.+|+++.++|++++..++.||++
T Consensus 67 ~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~ 146 (358)
T KOG2335|consen 67 LSTSPEDRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSV 146 (358)
T ss_pred cccCCCCCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcC
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|||++.+.+++++++++++++|++.++|||||+.++....+++||+.|+.+++.+. +||++||+|.+++|+.++++.||
T Consensus 147 KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG 226 (358)
T KOG2335|consen 147 KIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTG 226 (358)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998876677999999999999987 99999999999999999999999
Q ss_pred ccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCc--hHHHHHHHHHHHHhhhcCChH
Q 023070 161 CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVP--WRMIRSHVHKLLGEWFRIQPG 238 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~ 238 (287)
|||||+|||+|.|||+|.... + .....+++.+|++++.+++.. +..+|.|+++|++.++..++.
T Consensus 227 ~dGVM~arglL~NPa~F~~~~---~-----------~~~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~~~~~ 292 (358)
T KOG2335|consen 227 ADGVMSARGLLYNPALFLTAG---Y-----------GPTPWGCVEEYLDIAREFGGLSSFSLIRHHLFKMLRPLLSIHQD 292 (358)
T ss_pred CceEEecchhhcCchhhccCC---C-----------CCCHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999995411 1 112367899999999988744 999999999999999998888
Q ss_pred HHHHHHhcc-hhcHHHHHH-HHHHHHHhCCCCCCCC
Q 023070 239 VREDLNAQN-RLTFEFLYN-LVDRLRELGVRIPLYK 272 (287)
Q Consensus 239 ~r~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 272 (287)
+|..++..+ ..++.++.+ .+..+++.+.+.|...
T Consensus 293 ~r~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~ 328 (358)
T KOG2335|consen 293 LRRDLAALNSCESVIDFLEELVLMVRKRVEDGFGRG 328 (358)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHHhhhccccccC
Confidence 999998775 234555555 6667777777665543
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-54 Score=398.10 Aligned_cols=250 Identities=34% Similarity=0.513 Sum_probs=223.6
Q ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEE
Q 023070 5 PPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCK 82 (287)
Q Consensus 5 ~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vK 82 (287)
.+.+.|+++||+|++|+.+++||++++. |+|+||||||||++++.++++|++||++|+++.++|++++++++ +|||||
T Consensus 63 ~~~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVK 142 (323)
T COG0042 63 LEEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVK 142 (323)
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEE
Confidence 3569999999999999999999997754 89999999999999999999999999999999999999999994 999999
Q ss_pred ecCCCChhh--HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhc
Q 023070 83 IRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 83 iR~g~~~~~--~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+|+||+..+ ..++++.++++|++.|+|||||+.+.+. +++||+.|+++++.++ +|||+||||.|++|+.++++.+
T Consensus 143 iRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~--~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 143 IRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYL--GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred EecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCC--CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhh
Confidence 999998776 7899999999999999999999997654 4799999999999998 9999999999999999999999
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHhhhcCCh
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGEWFRIQP 237 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~r~~~~~~~~~~~~~~~ 237 (287)
||||||||||++.|||+|+++ +++.+|+..+ ++..+..+++.+|++...++. ..+..+|+|+.||+.. +++..
T Consensus 221 g~DgVMigRga~~nP~l~~~i---~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~~-~~~a~ 295 (323)
T COG0042 221 GADGVMIGRGALGNPWLFRQI---DYLETGELLP-PTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKG-LPGAR 295 (323)
T ss_pred CCCEEEEcHHHccCCcHHHHH---HHhhcCCCCC-CCHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhc-CccHH
Confidence 999999999999999999988 5666676654 667788999999998876655 5688999999998887 57778
Q ss_pred HHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 238 GVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 238 ~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
.+|+.+++.. +.+++..+++.+..
T Consensus 296 ~~r~~~~~~~--~~~~~~~~l~~~~~ 319 (323)
T COG0042 296 ELRRALNKAE--DGAEVRRALEAVFE 319 (323)
T ss_pred HHHHHHhccC--cHHHHHHHHHHHHh
Confidence 8899888876 77777777776544
No 3
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1.4e-53 Score=390.58 Aligned_cols=250 Identities=35% Similarity=0.549 Sum_probs=191.0
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+.+.++|+++||+|+||+.+++||+++.. |+|+||||||||++.+.++++|++||++|+.+.++++++++++++|||
T Consensus 47 ~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvs 126 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVS 126 (309)
T ss_dssp S-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEE
T ss_pred ccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceE
Confidence 3456778999999999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 81 CKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 81 vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
||+|+|++ .+++.++++.++++|+++|+||+||+.+.+. +++||+.++++++.+++|||+||||+|++|+.++++.
T Consensus 127 vKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~--~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~ 204 (309)
T PF01207_consen 127 VKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYK--GPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQ 204 (309)
T ss_dssp EEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCT--S---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCC
T ss_pred EecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCC--cccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHh
Confidence 99999987 6789999999999999999999999987654 4899999999999999999999999999999999999
Q ss_pred cCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CC--CchHHHHHHHHHHHHhhhcC
Q 023070 159 TGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YP--VPWRMIRSHVHKLLGEWFRI 235 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~--~~~~~~r~~~~~~~~~~~~~ 235 (287)
+||||||||||++.|||+|++.....+ +...+.++..+..+++.+|+++..+ ++ ..+..+|+|+.||+.. +++
T Consensus 205 tg~dgvMigRgal~nP~lf~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~-~~~ 280 (309)
T PF01207_consen 205 TGADGVMIGRGALGNPWLFREIDQIKE---GEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKG-FPG 280 (309)
T ss_dssp H-SSEEEESHHHCC-CCHHCHHHCHHH---HTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTT-STT
T ss_pred cCCcEEEEchhhhhcCHHhhhhhhhcc---CCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcc-CCc
Confidence 999999999999999999995322222 2222223356778899999986544 42 3467888888777665 566
Q ss_pred ChHHHHHHHhcchhcHHHHHHHHH
Q 023070 236 QPGVREDLNAQNRLTFEFLYNLVD 259 (287)
Q Consensus 236 ~~~~r~~l~~~~~~~~~~~~~~~~ 259 (287)
...+|+.+++.. +.+++.+.++
T Consensus 281 ~~~~r~~l~~~~--~~~e~~~~l~ 302 (309)
T PF01207_consen 281 ARKFRRELNKCK--TLEEFLELLE 302 (309)
T ss_dssp HHHHHHHHCCH---SHHHHHHHH-
T ss_pred HHHHHHHHHhhC--CHHHHhhhhc
Confidence 667899998876 7788888777
No 4
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=8.9e-52 Score=378.13 Aligned_cols=245 Identities=24% Similarity=0.374 Sum_probs=214.0
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEE
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVS 80 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~ 80 (287)
.++.++|+++||+|++|+.|++||+.++ .|+|+||||||||++.+.+.++|++|+++|+++.+|++++++.+ ++||+
T Consensus 58 ~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVs 137 (312)
T PRK10550 58 RTPSGTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVT 137 (312)
T ss_pred CCCCCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceE
Confidence 4677899999999999999999998665 59999999999999988888899999999999999999999987 49999
Q ss_pred EEecCCCCh-hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 81 CKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 81 vKiR~g~~~-~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
||+|+|++. +++.++++.++++|+++|+||+||..+. +.++ ++|+.++++++.+++|||+||||.|++|+.++++.
T Consensus 138 vKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 138 VKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred EEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 999999854 4588999999999999999999998764 4455 49999999999999999999999999999999988
Q ss_pred cCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHhhhcC
Q 023070 159 TGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV---PWRMIRSHVHKLLGEWFRI 235 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~r~~~~~~~~~~~~~ 235 (287)
+|||+||||||+++|||||++++. |+ +.++..++++++.+|+++..++.. .+..||+|+.||+++ +++
T Consensus 216 ~g~DgVmiGRg~l~nP~lf~~~~~------g~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~ 286 (312)
T PRK10550 216 TGCDAVMIGRGALNIPNLSRVVKY------NE--PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKE-YDE 286 (312)
T ss_pred cCCCEEEEcHHhHhCcHHHHHhhc------CC--CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhc-CCc
Confidence 999999999999999999998853 32 234566788889999987554432 266799999998886 678
Q ss_pred ChHHHHHHHhcchhcHHHHHHHHHHH
Q 023070 236 QPGVREDLNAQNRLTFEFLYNLVDRL 261 (287)
Q Consensus 236 ~~~~r~~l~~~~~~~~~~~~~~~~~~ 261 (287)
..++|+.+++.. +.+++.++++++
T Consensus 287 ~~~~r~~i~~~~--~~~e~~~~~~~~ 310 (312)
T PRK10550 287 ATELFQEIRALN--NSPDIARAIQAI 310 (312)
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHhh
Confidence 889999999987 888888888754
No 5
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=9.3e-52 Score=380.16 Aligned_cols=254 Identities=27% Similarity=0.373 Sum_probs=223.9
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.+.+++.|+++||+|++|++|++||+.+ +.|+|+||||||||++.+.+.++|++|+++|+++.++++++++.+++||++
T Consensus 59 ~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~v 138 (321)
T PRK10415 59 VHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTL 138 (321)
T ss_pred ccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEE
Confidence 3456678999999999999999999975 468999999999999988888899999999999999999999999999999
Q ss_pred EecCCCChh--hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 82 KIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 82 KiR~g~~~~--~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|+|.||+.+ ++.++++.++++|+++|+||+|++.+.+ .++++|+.++++++.+++|||+||||.|++|+.++++.+
T Consensus 139 KiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~--~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~ 216 (321)
T PRK10415 139 KIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYT 216 (321)
T ss_pred EEEccccCCcchHHHHHHHHHHhCCCEEEEecCcccccc--CCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhcc
Confidence 999998754 6889999999999999999999987653 457899999999999999999999999999999999889
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhhcCC
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQ 236 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~r~~~~~~~~~~~~~~ 236 (287)
|||+||+|||++.|||+|++++ .++..|+..++++..++.+++.+|++.+.+ |+. ++..+|+|+.||+++ +++.
T Consensus 217 gadgVmiGR~~l~nP~if~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~ 293 (321)
T PRK10415 217 GADALMIGRAAQGRPWIFREIQ--HYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQE-HAPN 293 (321)
T ss_pred CCCEEEEChHhhcCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhc-CCch
Confidence 9999999999999999999885 455556665556667888999999987654 443 378899999998886 6888
Q ss_pred hHHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 237 PGVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 237 ~~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
..+|+.+++.+ +.+++.++++++..
T Consensus 294 ~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 294 DQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 89999999987 89999999987653
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=5.5e-51 Score=373.59 Aligned_cols=240 Identities=22% Similarity=0.351 Sum_probs=204.7
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+++.++|+++||+|++|+.|++||+.+++ |+|+||||||||++++++++||++|+++|+++.++++++++++++||+
T Consensus 48 l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVs 127 (318)
T TIGR00742 48 LKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVT 127 (318)
T ss_pred cccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeE
Confidence 4567899999999999999999999998764 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCh----hhHHHHHHHHHHcCCCEEEEeccCC-CCcCCC-----CccccHHHHHHHHhhC-CCcEEEecCCCCH
Q 023070 81 CKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTR-DEKDGK-----KFRADWNAIKAVKNAL-RIPVLANGNVRHM 149 (287)
Q Consensus 81 vKiR~g~~~----~~~~~~a~~l~~~G~~~I~vh~rt~-~~~~~~-----~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~ 149 (287)
||+|+|++. +++.++++.++++|++.|+||+||+ .+.+.. ..+++|+.++++++.+ ++|||+||||+|+
T Consensus 128 vKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~ 207 (318)
T TIGR00742 128 VKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNS 207 (318)
T ss_pred EEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCH
Confidence 999999853 4678999999999999999999997 322211 1245899999999987 8999999999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 229 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 229 (287)
+|+.+++. |||+||||||++.|||+|.+++. ++.++ +.+.++..+..+.+++|++....+...+..+|+|+.||+
T Consensus 208 ~da~~~l~--g~dgVMigRgal~nP~if~~~~~--~l~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~ 282 (318)
T TIGR00742 208 EQIKQHLS--HVDGVMVGREAYENPYLLANVDR--EIFNE-TDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLF 282 (318)
T ss_pred HHHHHHHh--CCCEEEECHHHHhCCHHHHHHHH--HhcCC-CCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 99999995 89999999999999999999864 33333 333355566777888888765545556889999999988
Q ss_pred HhhhcCChHHHHHHHhcc
Q 023070 230 GEWFRIQPGVREDLNAQN 247 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~ 247 (287)
++ +++...+|+.+++..
T Consensus 283 ~g-~~~~~~~r~~~~~~~ 299 (318)
T TIGR00742 283 QG-KPGAKQWRRYLSENA 299 (318)
T ss_pred cc-CCCHHHHHHHHHhcc
Confidence 85 678889999998864
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.3e-47 Score=353.13 Aligned_cols=254 Identities=30% Similarity=0.519 Sum_probs=219.5
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.++++++|+++||+|++|++|++||+.++ .|+|+||||+|||+..+.+.++|+.++++|+++.++++++++.+++||+|
T Consensus 57 ~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~v 136 (319)
T TIGR00737 57 DIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTV 136 (319)
T ss_pred hcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEE
Confidence 45678999999999999999999999775 59999999999998766677777789999999999999999999999999
Q ss_pred EecCCCChh--hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 82 KIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 82 KiR~g~~~~--~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|+|.|++.. ++.++++.++++|+++|+||+|+..+. ++++++|+.++++++.+++||++||||.|++|+.++++.+
T Consensus 137 Kir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 137 KIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQG--YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred EEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccccc--CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 999987543 578999999999999999999987653 4457899999999999999999999999999999999878
Q ss_pred CccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhhcCC
Q 023070 160 GCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV--PWRMIRSHVHKLLGEWFRIQ 236 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~r~~~~~~~~~~~~~~ 236 (287)
|||+||+||+++.|||+|.+++ .++..++..++++..++++++.+|++++.+ |+. .+..+|+|+.+|+.. +++.
T Consensus 215 gad~VmigR~~l~~P~l~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~ 291 (319)
T TIGR00737 215 GCDGVMIGRGALGNPWLFRQIE--QYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKG-FPGN 291 (319)
T ss_pred CCCEEEEChhhhhCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhc-CCcH
Confidence 9999999999999999999885 445445444445666888999999987644 543 378899999998874 6888
Q ss_pred hHHHHHHHhcchhcHHHHHHHHHHHHH
Q 023070 237 PGVREDLNAQNRLTFEFLYNLVDRLRE 263 (287)
Q Consensus 237 ~~~r~~l~~~~~~~~~~~~~~~~~~~~ 263 (287)
+.+|+.++++. +++++.++++++..
T Consensus 292 ~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 292 AALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 89999999987 89999999888654
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=1.2e-47 Score=354.52 Aligned_cols=254 Identities=21% Similarity=0.344 Sum_probs=209.7
Q ss_pred CCCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 2 KNLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 2 ~~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.+++.++|+++||+|++|+.|++||+.++. |+|+||||||||++++++++||++|+++|+++.++++++++++++||+
T Consensus 58 l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVs 137 (333)
T PRK11815 58 LAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVT 137 (333)
T ss_pred hccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceE
Confidence 4567889999999999999999999997765 899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCh----hhHHHHHHHHHHcCCCEEEEeccCCC-CcCC-----CCccccHHHHHHHHhhC-CCcEEEecCCCCH
Q 023070 81 CKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG-----KKFRADWNAIKAVKNAL-RIPVLANGNVRHM 149 (287)
Q Consensus 81 vKiR~g~~~----~~~~~~a~~l~~~G~~~I~vh~rt~~-~~~~-----~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~ 149 (287)
+|+|++++. +++.++++.++++|+++|+||+|+.. +.+. ...+++|+.++++++.+ ++|||+||||+|+
T Consensus 138 vKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~ 217 (333)
T PRK11815 138 VKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTL 217 (333)
T ss_pred EEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCH
Confidence 999998643 45789999999999999999999862 2111 11357899999999985 8999999999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLL 229 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 229 (287)
+|+.++++ +||+|||||+++.|||+|++++...+ |++.+.++..+..+.+.+|++....++..+..+|+|+.||+
T Consensus 218 eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~ 292 (333)
T PRK11815 218 EEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELF---GEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLF 292 (333)
T ss_pred HHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhc---CCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 99999997 59999999999999999999864332 44333345556677777777665445556889999999988
Q ss_pred HhhhcCChHHHHHHHhcch---hcHHHHHHHHHHH
Q 023070 230 GEWFRIQPGVREDLNAQNR---LTFEFLYNLVDRL 261 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~~---~~~~~~~~~~~~~ 261 (287)
++ +++...+|+.+++... .+.+.+.+.+..+
T Consensus 293 ~~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 326 (333)
T PRK11815 293 QG-LPGARAWRRYLSENAHKPGAGIEVLEEALALV 326 (333)
T ss_pred cC-CCCHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 86 6888899999987642 3455555555443
No 9
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=100.00 E-value=3.7e-43 Score=323.94 Aligned_cols=258 Identities=21% Similarity=0.383 Sum_probs=212.7
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPV 79 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv 79 (287)
+.+..|.-+.|||+|+.|+.+.+||+++.+ .+|.||||||||...+-+.+.|++||++|..+.++++++....+ +|+
T Consensus 314 kRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPi 393 (614)
T KOG2333|consen 314 KRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPI 393 (614)
T ss_pred hhcCcccceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCe
Confidence 345666789999999999999999997643 58999999999999888888899999999999999999987774 699
Q ss_pred EEEecCCCChh--hHHHHHHHHH-HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 023070 80 SCKIRVFPNLQ--DTIKYAKMLE-DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 80 ~vKiR~g~~~~--~~~~~a~~l~-~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~ 154 (287)
|||||.|.... -+.+++..+. +-|+++||+|||+++|++.. .+||++|.++.+.. .+|+|+||||.|++|..+
T Consensus 394 TVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK--~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~ 471 (614)
T KOG2333|consen 394 TVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTK--SANWDYIEECADKAKSALPLIGNGDILSWEDWYE 471 (614)
T ss_pred EEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhc--ccChHHHHHHHHhcccCceeEecCccccHHHHHH
Confidence 99999986433 4556777776 89999999999999988765 79999999998875 389999999999999888
Q ss_pred HHHhcC-ccEEEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHH-HhCCC---chHHHHHHHHHHH
Q 023070 155 CLEETG-CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKYPV---PWRMIRSHVHKLL 229 (287)
Q Consensus 155 ~l~~~g-ad~VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~~~r~~~~~~~ 229 (287)
.+..++ +|+||||||+|-.||+|.+|+...+. ..+..+|+++++.|.+|. +.|+. .+...|+++..+|
T Consensus 472 ~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~w-------D~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~l 544 (614)
T KOG2333|consen 472 RLNQNPNVDSVMIARGALIKPWIFTEIKEQQHW-------DISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFL 544 (614)
T ss_pred HhhcCCCcceEEeeccccccchHhhhhhhhhcC-------CccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHH
Confidence 887665 99999999999999999999875432 245678999999999995 45553 3677888876555
Q ss_pred HhhhcCChHHHHHHHhcchhcHHHHHHHHHHH-HHhCCCCCCCCCCcchhhhhhhccc
Q 023070 230 GEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL-RELGVRIPLYKKDADDAEILADDLA 286 (287)
Q Consensus 230 ~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
.++.+..| . .+++.+ ..++.|||+|+||.++||||||.-|
T Consensus 545 SF~~RYiP--------------v---~l~e~lpqriN~RPp~y~gRdelETLm~S~ka 585 (614)
T KOG2333|consen 545 SFFHRYIP--------------V---GLLEVLPQRINDRPPLYTGRDELETLMSSQKA 585 (614)
T ss_pred HHHHhhch--------------H---HHhhcCchhhccCCccccchhHHHHHHhcccc
Confidence 54444444 1 233332 7789999999999999999999765
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.8e-38 Score=279.18 Aligned_cols=178 Identities=42% Similarity=0.699 Sum_probs=164.4
Q ss_pred CCCCCCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 3 NLPPEDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 3 ~~~~~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
..++.+.|+++||+|++|++|+++|+.+.. |||+||||+|||+++.++++||++++++++++.++++++++.+++||++
T Consensus 49 ~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~v 128 (231)
T cd02801 49 TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV 128 (231)
T ss_pred ccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 346788999999999999999999997755 9999999999999999999999999999999999999999998999999
Q ss_pred EecCCCChh-hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 82 KIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 82 KiR~g~~~~-~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
|+|.+++.. ++.++++.+++.|+++|+||+|+..+. +.++.+|+.++++++.+++||++||||.|++|+.++++.+|
T Consensus 129 k~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~g 206 (231)
T cd02801 129 KIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTG 206 (231)
T ss_pred EEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcC
Confidence 999998776 889999999999999999999987652 23367999999999999999999999999999999999889
Q ss_pred ccEEEEehhhhhCccchhchhh
Q 023070 161 CEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~~ 182 (287)
||+||+||+++.|||+|++++.
T Consensus 207 ad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 207 VDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CCEEEEcHHhHhCCHHHHhhhh
Confidence 9999999999999999998764
No 11
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=100.00 E-value=1.2e-36 Score=265.85 Aligned_cols=160 Identities=23% Similarity=0.248 Sum_probs=147.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+..|+++|+.+++|+++.++++.++.++|+||||||||++.+.+.++|++|+++|+.+.++++++++ .++||+||+|++
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~~ 144 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRGN 144 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence 4569999999999999999999998899999999999999999999999999999999999999994 589999999999
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
++..++.++++.++++|+++|+||.+... .+.++|+.|+++++.++ +|||+||||+|++|+.++++ +|||+||
T Consensus 145 ~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~Vm 218 (231)
T TIGR00736 145 CIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFVS 218 (231)
T ss_pred CCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeEE
Confidence 87778899999999999999999965432 12389999999999985 99999999999999999998 7999999
Q ss_pred EehhhhhC
Q 023070 166 SAESLLEN 173 (287)
Q Consensus 166 iGR~~l~n 173 (287)
+||+++.+
T Consensus 219 vgR~~l~~ 226 (231)
T TIGR00736 219 VARAILKG 226 (231)
T ss_pred EcHhhccC
Confidence 99999976
No 12
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.3e-36 Score=267.64 Aligned_cols=161 Identities=24% Similarity=0.318 Sum_probs=146.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+++||+|++|+.+.++|+.++.++|+||||||||++.+.+.++|++|+++|+.+.++++++++ .++||++|+|+++
T Consensus 72 ~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~ 150 (233)
T cd02911 72 NVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGV 150 (233)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 569999999999999999999887778999999999999998888999999999999999999997 5999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+ .++.++++.++++|++.|+++.+.. + ..+||+.+++++ +++|||+||||.|++|+.++++ +|||+||+|
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~----g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~-~GaD~VmiG 220 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDP----G--NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMFS-YGADMVSVA 220 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCC----C--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHH-cCCCEEEEc
Confidence 8 8899999999999999876654321 1 268999999987 7899999999999999999998 699999999
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
|+ .|||+|++++
T Consensus 221 R~--~~p~~~~~~~ 232 (233)
T cd02911 221 RA--SLPENIEWLV 232 (233)
T ss_pred CC--CCchHHHHhh
Confidence 99 9999998764
No 13
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.98 E-value=1.5e-31 Score=244.42 Aligned_cols=168 Identities=23% Similarity=0.319 Sum_probs=144.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
.+.|+++||+|+++++|.++|+.++. ++|+||||||||+.+ ++|+.++++|+++.++++++++.+++||++|+
T Consensus 89 ~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi 164 (300)
T TIGR01037 89 FPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKL 164 (300)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 35699999999999999999998763 489999999999964 47899999999999999999999899999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCcccc----HHHHHHHHhhCCCcEEEecC
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRAD----WNAIKAVKNALRIPVLANGN 145 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~~~~----~~~i~~i~~~~~ipVi~nGg 145 (287)
+. +.++..++++.++++|+|+|+||+++... ..++++++. ++.++++++.+++|||++||
T Consensus 165 ~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GG 242 (300)
T TIGR01037 165 SP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGG 242 (300)
T ss_pred CC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECC
Confidence 85 44678899999999999999998653210 012233443 47888999999999999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|.|++|+.+++. +|||+||+||+++.|||+|.++.
T Consensus 243 I~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~ 277 (300)
T TIGR01037 243 ITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKII 277 (300)
T ss_pred CCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHH
Confidence 999999999998 69999999999999999998775
No 14
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.97 E-value=1.5e-30 Score=237.64 Aligned_cols=170 Identities=18% Similarity=0.276 Sum_probs=147.4
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++|++|+ ++++|.++|+.+++ |+|+||||++||+.. ...++|+.++++|+.+.++++++++.+++||+||+|.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~ 177 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC
Confidence 68999999998 99999999998765 899999999999974 3445799999999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCC-------------------CcCCCCcccc----HHHHHHHHhhC--CCcE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------------------EKDGKKFRAD----WNAIKAVKNAL--RIPV 140 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~-------------------~~~~~~~~~~----~~~i~~i~~~~--~ipV 140 (287)
. ..+..++++.++++|+++|+++.++.. ...+++|++. |+.++++++.+ ++||
T Consensus 178 ~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipI 255 (299)
T cd02940 178 N--ITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPI 255 (299)
T ss_pred C--chhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcE
Confidence 4 457889999999999999986533211 1234555666 89999999999 8999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
|+||||.|.+|+.+++. +|||+||+||+++. +|.++.++.
T Consensus 256 ig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 256 SGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred EEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 99999999999999998 79999999999887 999998764
No 15
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.1e-30 Score=234.18 Aligned_cols=216 Identities=28% Similarity=0.493 Sum_probs=192.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
...+++|++.++|+-..++|+.+.....+||+|||||..+...+++|++|+.+|+.+..|+.++.+...+||++|||+..
T Consensus 81 ~~rlilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~ 160 (477)
T KOG2334|consen 81 NSRLILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLD 160 (477)
T ss_pred cCeEEEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCC---HHHHHHHHHhcCccE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRH---MEDVQKCLEETGCEG 163 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s---~~da~~~l~~~gad~ 163 (287)
+.++++++++++.+.|+..|+||+||++++... ++.-++++.+...+. +|||+||+..+ ..|+....+.+|+|+
T Consensus 161 s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~--~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~ 238 (477)
T KOG2334|consen 161 SKEDTLKLVKRICATGIAAITVHCRTRDERNQE--PATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADS 238 (477)
T ss_pred CcccHHHHHHHHHhcCCceEEEEeeccccCCCC--CCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccch
Confidence 999999999999999999999999999877554 677788999988886 99999999999 778888888899999
Q ss_pred EEEehhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhhcCChHHH
Q 023070 164 VLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVR 240 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~r 240 (287)
|||+|++..||.+|.+- ++.+..+.+++|++++.+|...+...+..+..++...+.+-|..+
T Consensus 239 vmiAR~A~~n~SiF~~e---------------G~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~ 300 (477)
T KOG2334|consen 239 VMIARAAESNPSIFREE---------------GCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGK 300 (477)
T ss_pred hhhhHhhhcCCceeeec---------------CCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhh
Confidence 99999999999999732 245678899999999998887777778888887776555545443
No 16
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=4e-29 Score=227.95 Aligned_cols=168 Identities=20% Similarity=0.315 Sum_probs=143.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+++||+|+++++|+++|+.+++ |+|+||||++||+.+. .|+.+.++++++.++++++++.+++||++|++.
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 57899999999999999999997754 8999999999999642 377888999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCccc----cHHHHHHHHhhCCCcEEEecCCC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRA----DWNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~~~----~~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
. .++..++++.++++|+|+|++++++... ....++++ .|+.++++++.+++|||++|||.
T Consensus 164 ~--~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~ 241 (296)
T cd04740 164 N--VTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA 241 (296)
T ss_pred C--chhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC
Confidence 3 4578899999999999999986543210 01122222 46889999999999999999999
Q ss_pred CHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
|++|+.++++ .|||+||+||+++.||++++++.
T Consensus 242 ~~~da~~~l~-~GAd~V~igra~l~~p~~~~~i~ 274 (296)
T cd04740 242 SGEDALEFLM-AGASAVQVGTANFVDPEAFKEII 274 (296)
T ss_pred CHHHHHHHHH-cCCCEEEEchhhhcChHHHHHHH
Confidence 9999999998 69999999999999999999775
No 17
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.96 E-value=8.8e-29 Score=226.24 Aligned_cols=169 Identities=21% Similarity=0.334 Sum_probs=143.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.|+++||+|+++++|+++|+.++. | +|+||||++||+. ..+ |..+.++++++.+++++|++.+++||++|++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~---~~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV---KHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC---CCC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 37899999999999999999997765 7 9999999999984 122 7788899999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--------------cCCCCc----cccHHHHHHHHhhCCCcEEEecCC
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF----RADWNAIKAVKNALRIPVLANGNV 146 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--------------~~~~~~----~~~~~~i~~i~~~~~ipVi~nGgI 146 (287)
. +.++..++++.++++|+|+|++++++... ....++ +..++.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 6 44578899999999999999986543211 011112 236889999999999999999999
Q ss_pred CCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 147 RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.|++|+.+++. .|||+||+||+++.||+++.++..
T Consensus 244 ~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 244 SSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred CCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHH
Confidence 99999999998 699999999999999999998753
No 18
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.96 E-value=8.2e-29 Score=225.07 Aligned_cols=169 Identities=22% Similarity=0.357 Sum_probs=146.9
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+++||+|++++++.++|+.+++ |+|+||||++||+.+. |..++++++.+.++++++++.+++||++|++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 47899999999999999999997755 8999999999998532 34478999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCc--------------CCCCc----cccHHHHHHHHhhC--CCcEEEecC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKF----RADWNAIKAVKNAL--RIPVLANGN 145 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~--------------~~~~~----~~~~~~i~~i~~~~--~ipVi~nGg 145 (287)
+++.++..++++.++++|+|+|++|+++.... ...++ +..+++++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 88888899999999999999999998754210 01111 12578899999988 899999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
|+|++|+.+++. .|||+||+||+++.| |++|.++.
T Consensus 252 I~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 252 IDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred CCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 999999999998 699999999999999 99999875
No 19
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.96 E-value=6.8e-29 Score=229.62 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=143.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----
Q 023070 21 EILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----- 85 (287)
++|++||+.+ ++|||+||||++ ||..|.|+|.||++|++|.+++.+|+++|++.++.||++|++.
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 6888999865 569999999987 9999999999999999999999999999999999999999997
Q ss_pred -CCChhhHHHHHHHHHHcCCCEEEEeccCCCCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 -FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 -g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
|.+.++..++++.+++.|+|+|+||+++.... ..++ ..+|++.+++++.+++||+++|+|.|++++++++++++||
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~-~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYP-GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRAD 300 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCc-cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCC
Confidence 45778899999999999999999999874321 1122 2478889999999999999999999999999999988899
Q ss_pred EEEEehhhhhCccchhchhh
Q 023070 163 GVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~~ 182 (287)
+|++||++++||+|++++..
T Consensus 301 ~V~~gR~~iadP~~~~k~~~ 320 (337)
T PRK13523 301 LIFIGRELLRNPYFPRIAAK 320 (337)
T ss_pred hHHhhHHHHhCccHHHHHHH
Confidence 99999999999999998864
No 20
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.96 E-value=1e-28 Score=229.38 Aligned_cols=162 Identities=19% Similarity=0.263 Sum_probs=139.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEec--c-------CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC---
Q 023070 21 EILLNAARRV-EPYCDYVDINL--G-------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP--- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~--g-------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~--- 87 (287)
++|++||+.+ ++|||+||||+ | ||..|.|+|+||++|++|.+++.+|+++|++.++.++.||+|+++
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~ 220 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED 220 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc
Confidence 6889999865 57999999997 4 899999999999999999999999999999999888888888753
Q ss_pred -----ChhhHHHHHHHHHHcC-CCEEEEeccCCCCc---------CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 88 -----NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEK---------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 88 -----~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~---------~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
+.++++++++.++++| +|+|+||+++.... ..++...+|+.++.+++.+++||++||+|+|++++
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~ 300 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEA 300 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHH
Confidence 4568899999999998 89999975543321 01112346888999999999999999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 153 QKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.++++.++||+||+||+++.||||++++..
T Consensus 301 ~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 301 EQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred HHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 999998889999999999999999998865
No 21
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.96 E-value=6.3e-28 Score=230.06 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=144.9
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+++||+|+ ++++|+++|+.++. |+|+||||++||++. ...++|+.++++|+.+.+|++++++.+++||+||++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~-~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGM-SERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc-cccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC
Confidence 58999999999 99999999997765 899999999999943 3345799999999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe---------------------ccCCCCcCCCCccc----cHHHHHHHHhhC---C
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDEKDGKKFRA----DWNAIKAVKNAL---R 137 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh---------------------~rt~~~~~~~~~~~----~~~~i~~i~~~~---~ 137 (287)
+..+..++++.++++|+++|++. +|+.. .+++|++ .|+.|+++++.+ +
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~--gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 178 --NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSH--GGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred --CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCc--ccccchhhhHHHHHHHHHHHhccccCC
Confidence 44467899999999999999953 23222 2344555 599999999987 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchhh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 182 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~~ 182 (287)
+|||++|||.|.+|+.+++. +|||+|||||+++. +|.++.++..
T Consensus 254 ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred CCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHH
Confidence 99999999999999999998 79999999999887 8998887754
No 22
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.95 E-value=5.1e-28 Score=224.56 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=143.3
Q ss_pred CHHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec--
Q 023070 19 DPEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR-- 84 (287)
Q Consensus 19 ~~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR-- 84 (287)
..++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|++++.+++++|++++ ++||.+|++
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 457899999966 5699999999885 99999999999999999999999999999998 489999997
Q ss_pred ----CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC---------CccccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 85 ----VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---------KFRADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 85 ----~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~---------~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
.|++.+++.++++.+++.|+++|.||+++..+.... .....++..+++++.+++||+++|+|.++++
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~ 306 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA 306 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 478888999999999999999999999876433210 0112367888999999999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+.+++++++||+|++||++++||+|+++++
T Consensus 307 a~~~l~~g~aD~V~lgR~~iadP~~~~k~~ 336 (338)
T cd04733 307 MEQALASGAVDGIGLARPLALEPDLPNKLL 336 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence 999999888999999999999999999875
No 23
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.95 E-value=2.8e-27 Score=215.47 Aligned_cols=168 Identities=15% Similarity=0.251 Sum_probs=138.4
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC----CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP----YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~----g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
.+.|+++||+|+ +++|.++++.++. ++|+||||++||+.. + +..+..+|+.+.++++++++.+++||+||
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~---~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP---G--KPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC---C--cccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999 9999999986653 689999999999941 1 23567799999999999999999999999
Q ss_pred ecCCCChhhHHHHHHHHHHc--CCCEEEEeccC-----------C-----CCc-CCCCcc----ccHHHHHHHHhhC--C
Q 023070 83 IRVFPNLQDTIKYAKMLEDA--GCSLLAVHGRT-----------R-----DEK-DGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~--G~~~I~vh~rt-----------~-----~~~-~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+|.+++..+..++++.+.+. |+++|+++.++ . .+. .+.+|+ ..+..++++++.+ +
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ 243 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE 243 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence 99998877888999999888 99999964322 1 010 111221 2356678888888 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||++|||.|.+|+.+++. .|||+||+||+++. +||+|+++.
T Consensus 244 ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 287 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIE 287 (294)
T ss_pred CCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHH
Confidence 99999999999999999998 79999999999995 999999875
No 24
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.95 E-value=2.9e-27 Score=218.48 Aligned_cols=168 Identities=20% Similarity=0.271 Sum_probs=144.3
Q ss_pred CCCCEEEEecCCC-------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC---
Q 023070 7 EDRPLFVQFCAND-------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--- 76 (287)
.+.|+++||+|++ .++|+++++.+..++|+||||++||+.. |...+++++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhcc
Confidence 4689999999998 7899999998877899999999999842 33347899999999999999875
Q ss_pred --CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhC--C
Q 023070 77 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 77 --~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+||++|++..++.++..++++.++++|+++|++|+++.... .+++++ ..|+.++++++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 99999999887777889999999999999999999865321 123333 3478899999988 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+||+++|||+|++|+.+++. .|||+||+||+++. +|++|.++.
T Consensus 281 ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHH
Confidence 99999999999999999998 79999999999987 599999875
No 25
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.95 E-value=6.9e-27 Score=219.99 Aligned_cols=162 Identities=25% Similarity=0.307 Sum_probs=140.0
Q ss_pred HHHHHHHHHH-cCCCCEEEEec---cC-------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 21 EILLNAARRV-EPYCDYVDINL---GC-------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~---gc-------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
++|++||+.+ ++|||+||||+ || |..|.|+|.||++|++|++++.+|+++|++++ ++||++|++.
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~ 229 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 6889999866 56999999996 64 88999999999999999999999999999988 5899999985
Q ss_pred ------------------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC-C----C-CccccHHHHHHHHhhCCCcEE
Q 023070 86 ------------------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-G----K-KFRADWNAIKAVKNALRIPVL 141 (287)
Q Consensus 86 ------------------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~-~----~-~~~~~~~~i~~i~~~~~ipVi 141 (287)
|.+.++++++++.++++|+|+|+||+++..... . + +....++.++.+++.+++||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 345678899999999999999999988754321 0 1 111236778899999999999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++|+|++++++.+++++++||+|++||+++.||||+++++.
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 99999999999999998889999999999999999998864
No 26
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.95 E-value=8.7e-27 Score=215.90 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=139.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCC-cEEEEecCC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV-PVSCKIRVF--- 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~-pv~vKiR~g--- 86 (287)
++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|.+++.+|+++|++.++. +|++|++..
T Consensus 152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 6888999866 4699999999888 9999999999999999999999999999998854 899999852
Q ss_pred ------CChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.+.++..++++.+++.|+|+|.| ||++..+. ...+++..+.+++.+++||+++|+|+ ++++.++++++
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 25578889999999999999999 56554322 35788999999999999999999997 99999999988
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+||+|++||++++||||+++++.
T Consensus 307 ~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 307 KADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred CCCEEEeCHhhhhCcCHHHHHhc
Confidence 89999999999999999998865
No 27
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.94 E-value=9.1e-27 Score=216.42 Aligned_cols=168 Identities=20% Similarity=0.264 Sum_probs=144.6
Q ss_pred CCCCEEEEecCC-------CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC---
Q 023070 7 EDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--- 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~-------~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--- 76 (287)
.+.|++++|+|+ ..++|++.++.+..++|+||+|++||+.. |....++++.+.+++++|++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999987 67899999998887899999999999842 23337899999999999999886
Q ss_pred --CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCcc----ccHHHHHHHHhhC--C
Q 023070 77 --VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFR----ADWNAIKAVKNAL--R 137 (287)
Q Consensus 77 --~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~----~~~~~i~~i~~~~--~ 137 (287)
+||+||++.+.+.++..++++.++++|+|+|++|+++... ..+.+|+ ..|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999988777789999999999999999999987432 1123333 3788999999988 7
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||++|||.|++|+.+++. .|||+||+||+++. +|+++.++.
T Consensus 290 ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~ 333 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIV 333 (344)
T ss_pred CCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHH
Confidence 99999999999999999998 79999999999976 599999875
No 28
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.94 E-value=1.3e-26 Score=214.98 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=139.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|+||++|++|++++.+++++|++.+ ++||++|++.
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 37888999864 5799999999875 99999999999999999999999999999998 7899999983
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc--cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF--RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~--~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|++.+++.++++.+++.|+++|.||..........+. ..+++..+++++.+++||+++|+|.|++++.++++.+
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 5678889999999999999999998543322111111 2356888999999999999999999999999999987
Q ss_pred CccEEEEehhhhhCccchhchh
Q 023070 160 GCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.||+||+||+++.||+|+.++.
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 313 RADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred CCCeehhhHHHHhCccHHHHHh
Confidence 7999999999999999998764
No 29
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=1.8e-26 Score=213.20 Aligned_cols=162 Identities=28% Similarity=0.348 Sum_probs=142.6
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g- 86 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|.||++++++++++.+++++|++.+ ++||++|++..
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 36888999865 569999999976 899999999999999999999999999999988 78999999863
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.+++.++++.+++.|+++|+|++++..+... .....+++.++.+++.+++||+++|||.|++++.++
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 466788999999999999999999887654321 112457788999999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchhchh
Q 023070 156 LEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
++.++||+|++||+++.||+|+.+++
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHHHh
Confidence 99879999999999999999999775
No 30
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=9e-27 Score=217.28 Aligned_cols=161 Identities=22% Similarity=0.308 Sum_probs=133.9
Q ss_pred HHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccC----CcEEEEecCC
Q 023070 21 EILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN----VPVSCKIRVF 86 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~----~pv~vKiR~g 86 (287)
++|++||+.+ ++|||+||||+ .||..|.|+|.||+++++|.+++.||+++|+++++ .++.|++|++
T Consensus 144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 6889999865 46999999995 59999999999999999999999999999999876 4555555553
Q ss_pred --------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH
Q 023070 87 --------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 87 --------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l 156 (287)
.+.++.+++++.+++.|+|+|+||+++............++.++.+++.+ ++||+++|||+|++++.+++
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l 303 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEAL 303 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 34578899999999999999999986543322111123566677777766 79999999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+. |||+|++||++++||+|+.+++.
T Consensus 304 ~~-gaD~V~~gR~liadPdl~~k~~~ 328 (353)
T cd04735 304 ET-GADLVAIGRGLLVDPDWVEKIKE 328 (353)
T ss_pred Hc-CCChHHHhHHHHhCccHHHHHHc
Confidence 97 89999999999999999998864
No 31
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.94 E-value=7.4e-26 Score=210.72 Aligned_cols=160 Identities=18% Similarity=0.214 Sum_probs=137.5
Q ss_pred HHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+||||++| |..|.|+|+||++|.+|.+++.+|+++|++.+ ++||.+|++.
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 5889999865 5699999999888 99999999999999999999999999999988 5899999984
Q ss_pred -------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC------------
Q 023070 86 -------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV------------ 146 (287)
Q Consensus 86 -------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI------------ 146 (287)
|.+.++..++++.+++.|+|+|+|+.+.... ..+. ..+++..+.+++.+++||+++|+|
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~-~~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~ 301 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFE-GSELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFAG 301 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcC-ccchhHHHHHHHHcCCCEEEECCccccccccccccc
Confidence 2345677889999999999999887653211 1122 246777888999999999999999
Q ss_pred ------CCHHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 147 ------RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 147 ------~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.|+++++++++.++||+|++||+++.||||+++++.
T Consensus 302 ~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~ 343 (361)
T cd04747 302 DEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVRE 343 (361)
T ss_pred ccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHc
Confidence 699999999998889999999999999999998864
No 32
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.93 E-value=2.3e-25 Score=208.85 Aligned_cols=162 Identities=17% Similarity=0.160 Sum_probs=134.8
Q ss_pred HHHHHHHHHHH-cCCCCEEEEeccC---------ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---
Q 023070 20 PEILLNAARRV-EPYCDYVDINLGC---------PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~gc---------P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--- 86 (287)
.++|++||+.+ ++|||+||||++| |..|.|+|.||++|++|.+++.+|+++|++.++.++.|++|++
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 37889999865 5699999999888 9999999999999999999999999999999865555555553
Q ss_pred -------CChhhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 87 -------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 87 -------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
++.++++++++.+++. +|++.|+....... ...+....|+..+.+++.+++||+++|+|++++++.++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 2456778999999876 79999976532211 11122346788899999999999999999999999999
Q ss_pred HHhcCccEEEEehhhhhCccchhchhh
Q 023070 156 LEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+++++||+|++||++++||||+.+++.
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~~ 334 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIRE 334 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHHc
Confidence 998889999999999999999998875
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.93 E-value=3.6e-25 Score=206.62 Aligned_cols=163 Identities=21% Similarity=0.219 Sum_probs=133.7
Q ss_pred HHHHHHHHHHH-cCCCCEEEEec---------cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---
Q 023070 20 PEILLNAARRV-EPYCDYVDINL---------GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~---------gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--- 86 (287)
.++|++||+.+ ++|||+||||. .||..|.|+|.||++|+++++++.+++++|++.++.++.+++|++
T Consensus 136 ~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D 215 (353)
T cd02930 136 IEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD 215 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc
Confidence 37889999865 57999999985 399999999999999999999999999999999865544444442
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCCCCc----CCCCcc-ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~----~~~~~~-~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
++.++++++++.++++|+|+|+|+....+.. ...... ...+..+++++.+++||+++|++.+++++++++
T Consensus 216 ~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i 295 (353)
T cd02930 216 LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLL 295 (353)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHH
Confidence 4667889999999999999999964321110 011112 234567889999999999999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhchhh
Q 023070 157 EETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++||+||+||+++.||||+++++.
T Consensus 296 ~~g~~D~V~~gR~~l~dP~~~~k~~~ 321 (353)
T cd02930 296 ADGDADMVSMARPFLADPDFVAKAAA 321 (353)
T ss_pred HCCCCChhHhhHHHHHCccHHHHHHh
Confidence 98889999999999999999998864
No 34
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.93 E-value=1.2e-24 Score=200.78 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=137.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+++||+|+++++|.++|+.++. |+|+||||++||. .+.+.+|+.+ ++.+.++++++++.+++||+||++..
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~--~~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~ 173 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALP--TDPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF 173 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC--CCCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC
Confidence 6899999999999999999998764 8999999999964 2234566544 57789999999999999999999864
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
..+..++++.++++|+++|++|+|+.... ...+|+ ..+++++++++.+++|||++|||.|++|
T Consensus 174 --~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D 251 (325)
T cd04739 174 --FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED 251 (325)
T ss_pred --ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence 34788999999999999999999863221 011222 2367788898888999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+.+++. .|||+||+||+++. +|.++.++.
T Consensus 252 a~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 252 VVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred HHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 999998 79999999999988 599888664
No 35
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.92 E-value=9.3e-25 Score=222.08 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=135.8
Q ss_pred HHHHHHHHHHH-cCCCCEEEEecc---------CChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC--
Q 023070 20 PEILLNAARRV-EPYCDYVDINLG---------CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV-- 85 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN~g---------cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~-- 85 (287)
.++|++||+.+ ++|||+||||++ ||..|.|+|+||++|+++.+++.+|+++|++.+ ++||++|++.
T Consensus 550 i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 550 RDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Confidence 36889999864 579999999988 999999999999999999999999999999987 5899999996
Q ss_pred ----CCChhhHHHHHHHHHHcCCCEEEEec-cCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ----FPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G~~~I~vh~-rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|++.++++++++.+++.|+|+|+||+ ++..... .+......+..+++|+.+++||+++|+|+++++++++++++
T Consensus 630 ~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 630 WVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 45677899999999999999999994 4432211 11112345667889999999999999999999999999998
Q ss_pred CccEEEEehhhhhCccchhc
Q 023070 160 GCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~ 179 (287)
+||+||+||++++||+|..+
T Consensus 710 ~~D~v~~gR~~l~dP~~~~~ 729 (765)
T PRK08255 710 RADLCALARPHLADPAWTLH 729 (765)
T ss_pred CcceeeEcHHHHhCccHHHH
Confidence 99999999999999955443
No 36
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.91 E-value=1.6e-23 Score=194.13 Aligned_cols=166 Identities=20% Similarity=0.213 Sum_probs=135.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+++||+|++++++.++|+.++ .|+|+|+||++||... .+..|.. .++.+.++++++++.+++||++|++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 589999999999999999999775 4899999999997632 2333432 346688999999999999999999874
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCc-----------CCCCcc----ccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
. .+..++++.++++|+++|++|+|+.... .+.+++ ..|+.++++++.+++|||++|||+|++|
T Consensus 176 ~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 F--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred c--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 4 4678899999999999999998864321 011222 2367788888888999999999999999
Q ss_pred HHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+.+++. +|||+||+||+++. +|.++.++.
T Consensus 254 a~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 254 VIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred HHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 999998 79999999999998 498777653
No 37
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.91 E-value=2e-23 Score=193.99 Aligned_cols=162 Identities=23% Similarity=0.313 Sum_probs=137.8
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecC---
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRV--- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~--- 85 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ .||.+|+..
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 6899999965 5799999998 779999999999999999999999999999999984 689999876
Q ss_pred ----CCChhhHHHHHHHHHHcC-CCEEEEeccCCC--CcCCCC-ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 86 ----FPNLQDTIKYAKMLEDAG-CSLLAVHGRTRD--EKDGKK-FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 ----g~~~~~~~~~a~~l~~~G-~~~I~vh~rt~~--~~~~~~-~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
|++.++..++++.+++.| +++|++.+.... +..... ..........++..+.+|||++|+|++++.++++++
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 345668899999999999 799999765443 111111 123446667788888899999999999999999999
Q ss_pred hcCccEEEEehhhhhCccchhchhh
Q 023070 158 ETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.+.||.|.+||+++.||+|..+++.
T Consensus 309 ~g~aDlVa~gR~~ladP~~~~k~~~ 333 (363)
T COG1902 309 SGRADLVAMGRPFLADPDLVLKAAE 333 (363)
T ss_pred cCCCCEEEechhhhcCccHHHHHHc
Confidence 7679999999999999999998875
No 38
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.88 E-value=4.4e-22 Score=186.03 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecC----
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRV---- 85 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~---- 85 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.++ ..|.+|+..
T Consensus 159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~ 238 (362)
T PRK10605 159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF 238 (362)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence 6889999865 5799999999 569999999999999999999999999999999884 258888753
Q ss_pred -----CCChhh-HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 -----FPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 -----g~~~~~-~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|.+.++ ++++++.+++.|+|+|.|+........ +......+++++.+++||+++|++ |++.++++++++
T Consensus 239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~----~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G 313 (362)
T PRK10605 239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGE----PYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKG 313 (362)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCc----cccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC
Confidence 245566 799999999999999999864322111 223456688898899999999996 899999999987
Q ss_pred CccEEEEehhhhhCccchhchhh
Q 023070 160 GCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
.||+|++||++++||+|+++++.
T Consensus 314 ~~D~V~~gR~~iadPd~~~k~~~ 336 (362)
T PRK10605 314 LIDAVAFGRDYIANPDLVARLQR 336 (362)
T ss_pred CCCEEEECHHhhhCccHHHHHhc
Confidence 79999999999999999998864
No 39
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.88 E-value=1.3e-22 Score=188.59 Aligned_cols=163 Identities=28% Similarity=0.379 Sum_probs=129.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCC-
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVF- 86 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g- 86 (287)
.++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|++.+ ++||.+|+...
T Consensus 148 i~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~ 227 (341)
T PF00724_consen 148 IEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTC
T ss_pred HHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeec
Confidence 36889999865 5799999999 55999999999999999999999999999999987 58899998773
Q ss_pred -----CChhhHHHHHHHHHHcCCCEEEEeccCC------CCc--CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHH
Q 023070 87 -----PNLQDTIKYAKMLEDAGCSLLAVHGRTR------DEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQ 153 (287)
Q Consensus 87 -----~~~~~~~~~a~~l~~~G~~~I~vh~rt~------~~~--~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~ 153 (287)
.+.+++.++++.+++.|++.+.++.... ... .........+....+++.+++|||++|+|.+++.+.
T Consensus 228 ~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae 307 (341)
T PF00724_consen 228 FVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAE 307 (341)
T ss_dssp SSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHH
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhH
Confidence 2346778889999999999886642211 110 111112345778888998999999999999999999
Q ss_pred HHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 154 KCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 154 ~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++++.||.|.+||++++||+|.++++.
T Consensus 308 ~~l~~g~~DlV~~gR~~ladPd~~~k~~~ 336 (341)
T PF00724_consen 308 KALEEGKADLVAMGRPLLADPDLPNKARE 336 (341)
T ss_dssp HHHHTTSTSEEEESHHHHH-TTHHHHHHH
T ss_pred HHHhcCCceEeeccHHHHhCchHHHHHHc
Confidence 99999889999999999999999998875
No 40
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.87 E-value=2.3e-21 Score=181.22 Aligned_cols=170 Identities=20% Similarity=0.292 Sum_probs=136.9
Q ss_pred CCCEEEEecC-CCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCA-NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g-~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
++|+|++|+| .++++|.+.++.+++ |+|+||||++||+...-++ .|..+.++|+.+.++++++++.+++||.+|+..
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 6899999977 899999999998765 8999999999999533333 588899999999999999999889999999865
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCC-------Cc------------CCCCccc----cHHHHHHHHhhC------
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------EK------------DGKKFRA----DWNAIKAVKNAL------ 136 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~-------~~------------~~~~~~~----~~~~i~~i~~~~------ 136 (287)
+..+..++++.+.++|+++|++..++.. .. .+.+|++ .+..+.++++.+
T Consensus 192 --n~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~ 269 (385)
T PLN02495 192 --NITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPE 269 (385)
T ss_pred --ChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccC
Confidence 5556888999999999999999765432 00 0111121 223344455554
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
++|||+.|||.|.+|+.+++. .||+.|+++++++.+ |.++.++.
T Consensus 270 ~ipIiGvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~ 314 (385)
T PLN02495 270 DRSLSGIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLC 314 (385)
T ss_pred CCcEEEECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHH
Confidence 499999999999999999999 599999999999887 99988764
No 41
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.85 E-value=8.4e-21 Score=175.62 Aligned_cols=169 Identities=18% Similarity=0.255 Sum_probs=139.0
Q ss_pred CCCCCEEEEecCC-------CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--
Q 023070 6 PEDRPLFVQFCAN-------DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 76 (287)
Q Consensus 6 ~~~~p~~~Qi~g~-------~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-- 76 (287)
..+.|++++++++ ..++|++.++.+...+|+||||++||+.. |.....+++.+.+++++|++.++
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~ 205 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGL 205 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhh
Confidence 3467999999887 58999999998877899999999999852 33445789999999999988776
Q ss_pred -----CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-----------cCCCCccc----cHHHHHHHHhhC
Q 023070 77 -----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFRA----DWNAIKAVKNAL 136 (287)
Q Consensus 77 -----~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-----------~~~~~~~~----~~~~i~~i~~~~ 136 (287)
+||.+|+....+.++..++++.++++|+++|++..++... ..+.+|++ .+.+++++++.+
T Consensus 206 ~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~ 285 (335)
T TIGR01036 206 RRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAEL 285 (335)
T ss_pred hhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 9999999887776688999999999999999997654321 11222322 356778888776
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
++|||+.|||.|++|+.+++. .|||.|++|++++. +|+++.++.
T Consensus 286 ~~~ipiig~GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 286 QGRLPIIGVGGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred CCCCCEEEECCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHHHH
Confidence 699999999999999999999 59999999999977 699998775
No 42
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.85 E-value=2.9e-20 Score=168.44 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=141.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.+.+++....+...+.|.+.+..++. + +|+|+||++||+. ++ |..+-++++.+.++++++++...+||.||+.
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 45679999999999999999987764 6 8999999999993 22 7778889999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC---------------cCCCCcc----ccHHHHHHHHhhCC--CcEEEe
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFR----ADWNAIKAVKNALR--IPVLAN 143 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~---------------~~~~~~~----~~~~~i~~i~~~~~--ipVi~n 143 (287)
. +..+..++|+.+.++|+|+|++...+... ..+.+|+ ..+..++++++.++ +|||+.
T Consensus 170 P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 P--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred C--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 6 77899999999999999999987533311 1122332 35678999999876 999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhC-ccchhchh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 181 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~n-P~lf~~~~ 181 (287)
|||.|.+|+.+++. .||+.|++|++++.+ |++|.++.
T Consensus 248 GGI~s~~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~ 285 (310)
T COG0167 248 GGIETGEDALEFIL-AGASAVQVGTALIYKGPGIVKEII 285 (310)
T ss_pred cCcCcHHHHHHHHH-cCCchheeeeeeeeeCchHHHHHH
Confidence 99999999999999 599999999999887 99999774
No 43
>PLN02411 12-oxophytodienoate reductase
Probab=99.85 E-value=1.7e-20 Score=177.03 Aligned_cols=161 Identities=14% Similarity=0.156 Sum_probs=127.2
Q ss_pred HHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--
Q 023070 21 EILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP-- 87 (287)
Q Consensus 21 ~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~-- 87 (287)
++|++||+.+ ++|||+|||| |.+|..|.|+|.||+++.+|.+++.||+++|+++++ -.|.+|+....
T Consensus 165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~ 244 (391)
T PLN02411 165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH 244 (391)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence 6899999865 5799999999 569999999999999999999999999999999984 24888887421
Q ss_pred -------ChhhHHHHHHHHHHc------CCCEEEEeccCCCCc---CC-CCc-ccc-HHHHHHHHhhCCCcEEEecCCCC
Q 023070 88 -------NLQDTIKYAKMLEDA------GCSLLAVHGRTRDEK---DG-KKF-RAD-WNAIKAVKNALRIPVLANGNVRH 148 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~------G~~~I~vh~rt~~~~---~~-~~~-~~~-~~~i~~i~~~~~ipVi~nGgI~s 148 (287)
..++..++++.+++. |+|+|.|........ .. ..+ ... ..+.+.+++.+++||+++|+| +
T Consensus 245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 123466778887763 599999976532110 00 000 111 245678899999999999999 5
Q ss_pred HHHHHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 149 MEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 149 ~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
++++.++++++.||.|.+||++++||+|..+++.
T Consensus 324 ~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 324 RELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred HHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence 7999999997679999999999999999998864
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.85 E-value=2.4e-20 Score=171.01 Aligned_cols=168 Identities=17% Similarity=0.299 Sum_probs=129.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-C-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-Y-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+|+||.|.++++|.+.|+.++. + +|+||||++||+.. + +..+-.+++.+.++++++++.+.+||.+|+..
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPP 166 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHHHhcCCccEEecCC
Confidence 5899999999999999999998765 6 89999999999841 1 44455689999999999999999999999988
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecc----------CCCC----c---CCCCcc----ccHHHHHHHHhhC--CCcEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGR----------TRDE----K---DGKKFR----ADWNAIKAVKNAL--RIPVLA 142 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~r----------t~~~----~---~~~~~~----~~~~~i~~i~~~~--~ipVi~ 142 (287)
..+..+..+.+..+.+.|++.|....+ +... . .+.+|+ ..+..++++++.+ ++|||+
T Consensus 167 ~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig 246 (310)
T PRK02506 167 YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIG 246 (310)
T ss_pred CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEE
Confidence 655444445555555667777644321 1100 0 111222 2456677887777 699999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
+|||.|.+|+.+++. .|||.||++++++. +|.++.++.
T Consensus 247 ~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~ 285 (310)
T PRK02506 247 TGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLT 285 (310)
T ss_pred ECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHH
Confidence 999999999999998 69999999999887 899998764
No 45
>PLN02826 dihydroorotate dehydrogenase
Probab=99.82 E-value=6.2e-19 Score=166.40 Aligned_cols=166 Identities=21% Similarity=0.240 Sum_probs=134.9
Q ss_pred CCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---------
Q 023070 9 RPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN--------- 74 (287)
Q Consensus 9 ~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~--------- 74 (287)
.|++++|+++ .+++|.+.++.+...+|+|+||..||+.. |-.-+.+++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 3899999888 68999999998888899999999999952 223356788999999988643
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC------------cCCCCccc----cHHHHHHHHhhC--
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFRA----DWNAIKAVKNAL-- 136 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~------------~~~~~~~~----~~~~i~~i~~~~-- 136 (287)
..+||.||+....+.++..++++.+.++|+++|++...+... ..+.+|++ .++.++++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 468999998876666788899999999999999998654311 11223332 467788888887
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh-Cccchhchh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 181 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~-nP~lf~~~~ 181 (287)
++|||+.|||.|.+|+.+++. .||+.|+++++++. +|+++.++.
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHHHH
Confidence 799999999999999999999 59999999999876 598887664
No 46
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.82 E-value=2e-19 Score=164.03 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=132.0
Q ss_pred CCCEEEEecCCC---HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 8 DRPLFVQFCAND---PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~---~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
..|+++++.|.+ .++|.+.|+.+++++|+||||+.||+.. .+..+..+++...++++.+++..++||.||+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 579999999999 9999999998889999999999999853 24456678899999999999888999999998
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCC----------Cc-----CCCCccc----cHHHHHHHHhhCC--CcEEEe
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD----------EK-----DGKKFRA----DWNAIKAVKNALR--IPVLAN 143 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~----------~~-----~~~~~~~----~~~~i~~i~~~~~--ipVi~n 143 (287)
...+.......+..+.+.|+++|++..++.. .. .+.+|++ .+.+++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 7555455566777777999999985433210 00 0112332 4677888998887 999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchhh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 182 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~~ 182 (287)
|||.|++|+.+++. .|||.|++++++ +.+|+++.++..
T Consensus 251 GGI~s~~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 251 GGIHSGEDAIEFLM-AGASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp SS--SHHHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHH
T ss_pred CCcCCHHHHHHHHH-hCCCHheechhhhhcCcHHHHHHHH
Confidence 99999999999999 599999999999 779999998753
No 47
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.81 E-value=3.6e-19 Score=162.69 Aligned_cols=142 Identities=26% Similarity=0.260 Sum_probs=116.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.+||++. +++.+.++++.++ .|+|+|++|++||+...+ ...++++++++.+++||++|...
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~ 181 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGIL 181 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecC
Confidence 37999999987 9999999988664 589999999999984222 23467888888888999999542
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
..+.++.+.++|+++|+|+++...+ .+.+++.|+.+.++++.+ ++|||++|||+++.|+.+++. .|||+
T Consensus 182 ------s~~~a~~a~~~G~d~I~v~~~gG~~--~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~-lGAd~ 252 (299)
T cd02809 182 ------TPEDALRAVDAGADGIVVSNHGGRQ--LDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA-LGADA 252 (299)
T ss_pred ------CHHHHHHHHHCCCCEEEEcCCCCCC--CCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCE
Confidence 2466889999999999997655332 234578899999998877 599999999999999999998 79999
Q ss_pred EEEehhhh
Q 023070 164 VLSAESLL 171 (287)
Q Consensus 164 VmiGR~~l 171 (287)
||+||+++
T Consensus 253 V~ig~~~l 260 (299)
T cd02809 253 VLIGRPFL 260 (299)
T ss_pred EEEcHHHH
Confidence 99999444
No 48
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.76 E-value=1.1e-17 Score=148.45 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=103.8
Q ss_pred ccccccCChHHHHHHHHHHhhcc--CCcE---EEEecCCCCh--hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNL--NVPV---SCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~--~~pv---~vKiR~g~~~--~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~ 125 (287)
.|++++++|+++.++++++.+.+ .+++ .+|++ ||+. .++.++++.+++.|++.|++|++++.+++. | +|
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~--G-~d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLT--G-PN 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCcc--C-CC
Confidence 57999999999999999987665 3344 45553 6642 367899999999999999999999998754 3 59
Q ss_pred HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH--hcCccEEEEehhhhhCccchhch
Q 023070 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLE--ETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 126 ~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~--~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
|+.++++++.+++|||+||||+|++|+.++++ .+|||+||+||+++.++.-+.++
T Consensus 179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 179 LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEA 235 (241)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence 99999999999999999999999999998864 36999999999999988655443
No 49
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.71 E-value=2e-16 Score=141.69 Aligned_cols=142 Identities=20% Similarity=0.293 Sum_probs=117.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g------ 86 (287)
+|++| ....+.++.+++..|++.|.|| ++++.+|+++.++++++.+. .+++++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 56655 6666677777777799999997 56778999999999988532 26777777655
Q ss_pred -----C---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 87 -----P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 87 -----~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
| ...+..++++.+++.|++.+++|++++.+++.+ .||+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G---~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG---YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC---CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 223578999999999999999999999887653 69999999999999999999999999999999966
Q ss_pred cCccEEEEehhhhhC
Q 023070 159 TGCEGVLSAESLLEN 173 (287)
Q Consensus 159 ~gad~VmiGR~~l~n 173 (287)
+|||+|++|++++-.
T Consensus 218 ~GvdgVivg~a~~~~ 232 (258)
T PRK01033 218 LGADAAAAGSLFVFK 232 (258)
T ss_pred CCCCEEEEcceeeeC
Confidence 899999999998755
No 50
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.68 E-value=7.2e-16 Score=142.83 Aligned_cols=155 Identities=26% Similarity=0.349 Sum_probs=116.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
.+.|+++++++. +++++.++.+.+ ++|+++||++|++......++. +.+.+.+.++.+++.+++||.+
T Consensus 112 ~~~p~i~nl~~~~~~~~~~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 112 PNGPLIANIGAPQLVEGGPEEAQEAIDMI--EADALAIHLNVLQELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred CCCcEEeecCchhhccccHHHHHHHHHHh--cCCCEEEcCcccccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEE
Confidence 478999988753 355566666655 5789999999999776666543 3456778999999999999999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------c--CC--CCccccH-----HHHHHHHh-hCCCcEEEec
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------K--DG--KKFRADW-----NAIKAVKN-ALRIPVLANG 144 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~--~~--~~~~~~~-----~~i~~i~~-~~~ipVi~nG 144 (287)
|.. |. ....+.++.++++|+|+|+|+|+.... + .. .....+| +.+.++++ .+++|||++|
T Consensus 185 K~~-g~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasG 261 (333)
T TIGR02151 185 KEV-GF--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASG 261 (333)
T ss_pred Eec-CC--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEEC
Confidence 975 32 235788999999999999999864211 0 00 0112344 45666666 4689999999
Q ss_pred CCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 145 NVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 145 gI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
||+++.|+.+++. .|||+|++||+++.
T Consensus 262 GI~~~~di~kaLa-lGAd~V~igr~~L~ 288 (333)
T TIGR02151 262 GLRTGLDVAKAIA-LGADAVGMARPFLK 288 (333)
T ss_pred CCCCHHHHHHHHH-hCCCeehhhHHHHH
Confidence 9999999999999 58999999999984
No 51
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.68 E-value=1.5e-16 Score=141.39 Aligned_cols=138 Identities=22% Similarity=0.329 Sum_probs=103.9
Q ss_pred HHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 25 NAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 25 ~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
++|+++++ |++.|.+|.|||+..++++ |.+++++|+.+. +|++.+++||+.|+|.|. ..-++.|+++|
T Consensus 28 ~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-----~~Ea~~L~~~G 96 (293)
T PRK04180 28 EQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH-----FVEAQILEALG 96 (293)
T ss_pred HHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-----HHHHHHHHHcC
Confidence 56777765 9999999999999987777 999999999887 555567999999999863 22244444555
Q ss_pred CCEEEEec-----------------------------------------------------------------------c
Q 023070 104 CSLLAVHG-----------------------------------------------------------------------R 112 (287)
Q Consensus 104 ~~~I~vh~-----------------------------------------------------------------------r 112 (287)
+|+|.-+. .
T Consensus 97 vDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 97 VDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred CCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 55543321 1
Q ss_pred CCCCcCC--CCccccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 113 TRDEKDG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 113 t~~~~~~--~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
|.+.... ....++|+.++++++..++||+ +.|||.|++++..+++ .|||+|++|++++..+
T Consensus 177 t~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 177 SEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSG 241 (293)
T ss_pred CHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCC
Confidence 1111000 0124689999999998899998 9999999999999998 6999999999998433
No 52
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.66 E-value=2.7e-15 Score=132.13 Aligned_cols=143 Identities=23% Similarity=0.225 Sum_probs=109.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec----CCC-
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR----VFP- 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR----~g~- 87 (287)
+|+.| ......++.++++.|+|.|- .|++++.+|+.+.++++.+.+.+-+++.+|.+ .+|
T Consensus 77 v~~~G-GI~~~ed~~~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~ 141 (233)
T PRK00748 77 VQVGG-GIRSLETVEALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWL 141 (233)
T ss_pred EEEcC-CcCCHHHHHHHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCe
Confidence 44433 33444444445556777764 36788889999999999886554444444321 234
Q ss_pred --ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 --NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 --~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+..+..++++.+++.|++.|++|+++++++.. + +||+.++++++.+++|||++|||+|++|+.++++.+|||+||
T Consensus 142 ~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~--G-~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~ 218 (233)
T PRK00748 142 ETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLS--G-PNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVI 218 (233)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcC--C-CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEE
Confidence 23466899999999999999999999887654 2 799999999999999999999999999999999976699999
Q ss_pred EehhhhhC
Q 023070 166 SAESLLEN 173 (287)
Q Consensus 166 iGR~~l~n 173 (287)
+||+++..
T Consensus 219 vg~a~~~~ 226 (233)
T PRK00748 219 VGRALYEG 226 (233)
T ss_pred EEHHHHcC
Confidence 99999865
No 53
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.65 E-value=7.1e-15 Score=137.05 Aligned_cols=154 Identities=23% Similarity=0.243 Sum_probs=116.6
Q ss_pred CCCEEEEecC-----CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCA-----NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g-----~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|++++|+. .+++.+.++.+.+ ++|+++||++||+......++ .+.+.+.+.++++++.+++||.+|
T Consensus 120 ~~p~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK 192 (352)
T PRK05437 120 DGLLFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVK 192 (352)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEE
Confidence 7789886655 4467777777666 569999999999976665542 356667899999999899999999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cC----CCC-----ccccHHHHHHHHhh-CCCcEEEecC
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KD----GKK-----FRADWNAIKAVKNA-LRIPVLANGN 145 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~----~~~-----~~~~~~~i~~i~~~-~~ipVi~nGg 145 (287)
.... ..+.+.++.++++|+|+|+|+|+.... +. ... +.+-.+.+.++++. .++|||++||
T Consensus 193 ~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GG 269 (352)
T PRK05437 193 EVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGG 269 (352)
T ss_pred eCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECC
Confidence 8632 233678899999999999998763210 00 000 11223467777777 5899999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|+|+.|+.+++.. |||+|++||+++.
T Consensus 270 I~~~~dv~k~l~~-GAd~v~ig~~~l~ 295 (352)
T PRK05437 270 IRNGLDIAKALAL-GADAVGMAGPFLK 295 (352)
T ss_pred CCCHHHHHHHHHc-CCCEEEEhHHHHH
Confidence 9999999999995 8999999999985
No 54
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.65 E-value=2.8e-15 Score=133.01 Aligned_cols=136 Identities=26% Similarity=0.351 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEecC----------CC--Ch
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRV----------FP--NL 89 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~----------g~--~~ 89 (287)
...+.+.++.|+|.|.++ +.++.+|+.+.++++.+.+ .+-+++.+|.|. ++ +.
T Consensus 83 ~~d~~~~l~~G~~~v~ig--------------~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~ 148 (243)
T cd04731 83 LEDARRLLRAGADKVSIN--------------SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTG 148 (243)
T ss_pred HHHHHHHHHcCCceEEEC--------------chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecC
Confidence 333444445688888775 5667899999999998853 344556555443 32 23
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|+++|++|+++..+... ..+|+.++++++.+++||+++|||++++|+.++++.+|||+||+||+
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~---g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~a 225 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKK---GYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASI 225 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCC---CCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHH
Confidence 567899999999999999999998765432 36899999999999999999999999999999999889999999999
Q ss_pred hhhCcc
Q 023070 170 LLENPA 175 (287)
Q Consensus 170 ~l~nP~ 175 (287)
++..-.
T Consensus 226 l~~~~~ 231 (243)
T cd04731 226 FHFGEY 231 (243)
T ss_pred HHcCCC
Confidence 986543
No 55
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.64 E-value=3.4e-15 Score=131.58 Aligned_cols=139 Identities=23% Similarity=0.309 Sum_probs=112.1
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF------ 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g------ 86 (287)
+|+ |+++..+..+.++.+.|++.|.+| +.++++|+++.++++...+. .++++++++.+
T Consensus 77 v~~-~ggi~~~~d~~~~~~~G~~~vilg--------------~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~ 140 (232)
T TIGR03572 77 LTV-GGGIRSLEDAKKLLSLGADKVSIN--------------TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDY 140 (232)
T ss_pred EEE-ECCCCCHHHHHHHHHcCCCEEEEC--------------hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcE
Confidence 344 556666667666667789999886 66788999999999887433 26677777663
Q ss_pred ------C---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH
Q 023070 87 ------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 87 ------~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~ 157 (287)
| ...++.++++.+++.|++.|++|+++..+... ..+|+.++++++.+++||+++|||+|++|+.+++.
T Consensus 141 ~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~ 217 (232)
T TIGR03572 141 KVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMK---GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVAL 217 (232)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcC---CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHH
Confidence 1 13457899999999999999999988875433 36899999999999999999999999999999777
Q ss_pred hcCccEEEEehhh
Q 023070 158 ETGCEGVLSAESL 170 (287)
Q Consensus 158 ~~gad~VmiGR~~ 170 (287)
.+|||+|++|+++
T Consensus 218 ~~gadgV~vg~a~ 230 (232)
T TIGR03572 218 EAGASAVAAASLF 230 (232)
T ss_pred HcCCCEEEEehhh
Confidence 7899999999986
No 56
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.64 E-value=9.6e-16 Score=142.81 Aligned_cols=136 Identities=19% Similarity=0.264 Sum_probs=114.7
Q ss_pred CCCCCCEEEEecC--CCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE
Q 023070 5 PPEDRPLFVQFCA--NDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC 81 (287)
Q Consensus 5 ~~~~~p~~~Qi~g--~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v 81 (287)
+++..|+.+||+| ++|+. ++|++.+++ +++. .+|+++.+++++++++. |++
T Consensus 82 ~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~----------------------~~p~l~~~ii~~vr~a~---Vtv 135 (369)
T TIGR01304 82 HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP----------------------LKPELLGERIAEVRDSG---VIT 135 (369)
T ss_pred CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----------------------cChHHHHHHHHHHHhcc---eEE
Confidence 4556788999999 67777 888887765 5554 37999999999999873 999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
|+|+++ .++.++++.++++|++.|++|+|++++.+.. +..+|..+.++++..++|||+ |+|.|.+++.++++ +||
T Consensus 136 kiRl~~--~~~~e~a~~l~eAGad~I~ihgrt~~q~~~s-g~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~-aGa 210 (369)
T TIGR01304 136 AVRVSP--QNAREIAPIVVKAGADLLVIQGTLVSAEHVS-TSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLMR-TGA 210 (369)
T ss_pred EEecCC--cCHHHHHHHHHHCCCCEEEEeccchhhhccC-CCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHHH-cCC
Confidence 999953 5788999999999999999999999876522 346888899988889999998 99999999999998 799
Q ss_pred cEEEEehhhh
Q 023070 162 EGVLSAESLL 171 (287)
Q Consensus 162 d~VmiGR~~l 171 (287)
|+||+|++.-
T Consensus 211 DgV~~G~gg~ 220 (369)
T TIGR01304 211 AGVIVGPGGA 220 (369)
T ss_pred CEEEECCCCC
Confidence 9999998764
No 57
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.62 E-value=7e-15 Score=129.55 Aligned_cols=147 Identities=24% Similarity=0.261 Sum_probs=112.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEec----C
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR----V 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR----~ 85 (287)
+-+|+.|. .....++.++++.|+|.|-+ |+.++.+|+++.++.+.+.+ .+-+++.+|.+ .
T Consensus 74 ~pv~~~Gg-I~~~e~~~~~~~~Gad~vvi--------------gs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~ 138 (234)
T cd04732 74 IPVQVGGG-IRSLEDIERLLDLGVSRVII--------------GTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATK 138 (234)
T ss_pred CCEEEeCC-cCCHHHHHHHHHcCCCEEEE--------------CchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEEC
Confidence 34666553 44455555566678888744 56778899999999998754 32223333221 1
Q ss_pred CC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+| +..+..++++.+++.|++.+++|++++.+... ..+|+.++++++.+++||+++|||++++|+.++++ .|||
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~---g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~ 214 (234)
T cd04732 139 GWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLS---GPNFELYKELAAATGIPVIASGGVSSLDDIKALKE-LGVA 214 (234)
T ss_pred CCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccC---CCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCC
Confidence 22 23467899999999999999999998876543 38899999999999999999999999999999998 5999
Q ss_pred EEEEehhhhhCccc
Q 023070 163 GVLSAESLLENPAL 176 (287)
Q Consensus 163 ~VmiGR~~l~nP~l 176 (287)
+||+||+++.++--
T Consensus 215 gv~vg~~~~~~~~~ 228 (234)
T cd04732 215 GVIVGKALYEGKIT 228 (234)
T ss_pred EEEEeHHHHcCCCC
Confidence 99999999999853
No 58
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.61 E-value=2.4e-14 Score=132.38 Aligned_cols=154 Identities=27% Similarity=0.348 Sum_probs=114.0
Q ss_pred CCCEEEEecCC-----CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCAN-----DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~-----~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
+.|++++++.. +++++.++.+.+ ++|+++||++||+......+. ++.+.+.+.++.+++.+++||.+|
T Consensus 112 ~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK 184 (326)
T cd02811 112 NGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVK 184 (326)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 57888777664 567777776655 579999999998865555532 355667788999999899999999
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC--C-----cCCC------CccccH-----HHHHHHHhhC-CCcEEEe
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--E-----KDGK------KFRADW-----NAIKAVKNAL-RIPVLAN 143 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~--~-----~~~~------~~~~~~-----~~i~~i~~~~-~ipVi~n 143 (287)
.... ..+.+.++.++++|+|+|+|+|+-.. . +... ....+| ..+.++++.+ ++|||++
T Consensus 185 ~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIias 261 (326)
T cd02811 185 EVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIAS 261 (326)
T ss_pred ecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEE
Confidence 7432 23367889999999999999874110 0 0000 001223 4566777766 8999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|||++..|+.+++. .|||+|++||+++.
T Consensus 262 GGIr~~~dv~kal~-lGAd~V~i~~~~L~ 289 (326)
T cd02811 262 GGIRNGLDIAKALA-LGADLVGMAGPFLK 289 (326)
T ss_pred CCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Confidence 99999999999999 48999999999873
No 59
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.59 E-value=3.3e-14 Score=125.98 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEE---ec-C
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCK---IR-V 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vK---iR-~ 85 (287)
+-+|+.| ....+.++..+++.|+|.|-+ |+.++++|+.+.++.+.+.. .+-+.+++| +. .
T Consensus 77 ~~l~v~G-Gi~~~~~~~~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~ 141 (241)
T PRK13585 77 VPVQLGG-GIRSAEDAASLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIK 141 (241)
T ss_pred CcEEEcC-CcCCHHHHHHHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEEC
Confidence 4456633 334444445555679998866 56778899999999888632 221222322 11 1
Q ss_pred CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
||.. .+..++++.+++.|++.|++|+++..+... ..+|+.++++++.+++||+++|||+|++|+.++++ .||+
T Consensus 142 g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~---g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~-~Ga~ 217 (241)
T PRK13585 142 GWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLE---GVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKE-AGAA 217 (241)
T ss_pred CCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCC
Confidence 4432 267899999999999999999998765432 47999999999999999999999999999999765 7999
Q ss_pred EEEEehhhhhCccchhchh
Q 023070 163 GVLSAESLLENPALFAGFR 181 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~ 181 (287)
+|++|++++.+|..+.++.
T Consensus 218 gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 218 GVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred EEEEEHHHhcCCcCHHHHH
Confidence 9999999999999877553
No 60
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.58 E-value=5.3e-14 Score=123.78 Aligned_cols=141 Identities=25% Similarity=0.267 Sum_probs=109.1
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHh-hccCCcEEEEecC-----
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-LNLNVPVSCKIRV----- 85 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~-~~~~~pv~vKiR~----- 85 (287)
-+|+.| ......++.++++.|+|.|=+ |+.++++|+.+.++++++. +. +.+++++|.
T Consensus 74 pi~~gg-GI~~~ed~~~~~~~Ga~~vvl--------------gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~ 136 (230)
T TIGR00007 74 PVQVGG-GIRSLEDVEKLLDLGVDRVII--------------GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAV 136 (230)
T ss_pred CEEEeC-CcCCHHHHHHHHHcCCCEEEE--------------ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEE
Confidence 345533 334444444455578887743 5677789999999999885 33 455555553
Q ss_pred -CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 -FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 -g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
||. ..+..++++.+++.|++.+++|.+++.++.. ..||+.++++++.+++||+++|||+|++|+.++++ +||
T Consensus 137 ~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~---g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~-~Ga 212 (230)
T TIGR00007 137 KGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLS---GPNFELTKELVKAVNVPVIASGGVSSIDDLIALKK-LGV 212 (230)
T ss_pred cCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCC
Confidence 343 2366889999999999999999999887543 37899999999999999999999999999999887 799
Q ss_pred cEEEEehhhhhC
Q 023070 162 EGVLSAESLLEN 173 (287)
Q Consensus 162 d~VmiGR~~l~n 173 (287)
|+||+||+++.+
T Consensus 213 dgv~ig~a~~~~ 224 (230)
T TIGR00007 213 YGVIVGKALYEG 224 (230)
T ss_pred CEEEEeHHHHcC
Confidence 999999999976
No 61
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.56 E-value=1.6e-13 Score=116.01 Aligned_cols=142 Identities=23% Similarity=0.248 Sum_probs=109.3
Q ss_pred CCCCEEEEecCCCHHHHHH-HHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLN-AAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~-aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
.+.|+++|+..+++..+.. +|+ ..+.|+|+|+||.+||.. ++...++++++++.+ ++|+.+|+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~ 121 (200)
T cd04722 56 TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKL 121 (200)
T ss_pred cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEE
Confidence 4689999999998887665 234 445699999999999864 788899999999887 89999999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+........ .+.+.|+++|.++++...+......+.....+..++...++||+++|||.+++++.++++. |||+
T Consensus 122 ~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~-Gad~ 195 (200)
T cd04722 122 SPTGELAAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALAL-GADG 195 (200)
T ss_pred CCCCccchh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHh-CCCE
Confidence 875432221 1678899999999887654322111111244566667788999999999999999999995 9999
Q ss_pred EEEeh
Q 023070 164 VLSAE 168 (287)
Q Consensus 164 VmiGR 168 (287)
|++||
T Consensus 196 v~vgs 200 (200)
T cd04722 196 VIVGS 200 (200)
T ss_pred EEecC
Confidence 99997
No 62
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.56 E-value=7.1e-14 Score=124.84 Aligned_cols=128 Identities=20% Similarity=0.300 Sum_probs=103.1
Q ss_pred HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHh-h----ccC-------CcEEEEecCCCCh--hhHHH
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA-L----NLN-------VPVSCKIRVFPNL--QDTIK 94 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~-~----~~~-------~pv~vKiR~g~~~--~~~~~ 94 (287)
.++.|++.|-++ +.++++|+++.++.+.+. + .++ .|++||+|.++.. ....+
T Consensus 92 ~l~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~ 157 (253)
T PRK02083 92 LLRAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVE 157 (253)
T ss_pred HHHcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHH
Confidence 344577877664 667789999999999873 1 223 4678999887643 36678
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+++.+++.|++.+++|+..+.++.. ..||+.++++++.+++|||++|||.|.+|+.++++.+|||+||+|++++..
T Consensus 158 ~~~~~~~~g~~~ii~~~i~~~g~~~---g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 158 WAKEVEELGAGEILLTSMDRDGTKN---GYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCC---CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 9999999999999998866554333 268999999999999999999999999999999987799999999999865
No 63
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.54 E-value=5.6e-14 Score=129.91 Aligned_cols=163 Identities=17% Similarity=0.191 Sum_probs=124.5
Q ss_pred HHHHHHHHHHH-cCCCCEEEEe---------ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEec---
Q 023070 20 PEILLNAARRV-EPYCDYVDIN---------LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR--- 84 (287)
Q Consensus 20 ~~~~~~aA~~~-~~g~d~IdiN---------~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR--- 84 (287)
.|-++.||+.+ +.|||+|||| |-.|..|.|+|.||+++.+|.+++.|++++|++.+. .+..+-..
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 35677788877 7899999999 669999999999999999999999999999999872 33333322
Q ss_pred ---CCCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------cCCCC--ccccHHHHHHHHhhCCCcEE-EecCCCCHHH
Q 023070 85 ---VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGKK--FRADWNAIKAVKNALRIPVL-ANGNVRHMED 151 (287)
Q Consensus 85 ---~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------~~~~~--~~~~~~~i~~i~~~~~ipVi-~nGgI~s~~d 151 (287)
.+++.++...++..+++.|++.+-++|++... ++... -....+....++...+.||| ++|+.++.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 14566778888999999999966665544321 11100 01223555666666666666 6678999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchhh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFRT 182 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~~ 182 (287)
+.++++....|+|..||.+++||+|..++..
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl~~ 363 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRLLN 363 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHHHh
Confidence 9999999888999999999999999998864
No 64
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.53 E-value=1.6e-13 Score=122.75 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=95.0
Q ss_pred cccccCChHHHHHHHHHHh-hcc--CC-----cE------EEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCc
Q 023070 54 GAFLMDNLPLVKSLVEKLA-LNL--NV-----PV------SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEK 117 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~-~~~--~~-----pv------~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~ 117 (287)
|+.++.+|+++.++.+... +.+ .+ ++ .||+|.+++ ..+..++++.+++.|++.|++|++++.++
T Consensus 103 gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~ 182 (254)
T TIGR00735 103 NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182 (254)
T ss_pred ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC
Confidence 5677789999999988773 222 11 11 366666543 34678999999999999999999888654
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.. .++|+.++++++.+++||+++|||+|++|+.++++.++||+||+|++++..
T Consensus 183 ~~---g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 183 KS---GYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred CC---CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 32 489999999999999999999999999999999997679999999998754
No 65
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.46 E-value=1.1e-12 Score=114.21 Aligned_cols=150 Identities=25% Similarity=0.281 Sum_probs=119.5
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC---
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--- 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--- 85 (287)
.++-+|++|. .-+...+.++++.|++-|-+ |+...++|+++.++++..... +-|++..|.
T Consensus 74 ~~~~vQvGGG-IRs~~~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g~v 136 (241)
T COG0106 74 TDVPVQVGGG-IRSLEDVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDGKV 136 (241)
T ss_pred CCCCEEeeCC-cCCHHHHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCCcc
Confidence 4567899774 34445555667788877766 677789999999999998744 455555554
Q ss_pred ---CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ---g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
||.. -+..++++++++.|+..|.+|..+++++.. ..|++.++++.+.+++||+++|||.|.+|+..+-+..
T Consensus 137 av~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~---G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~ 213 (241)
T COG0106 137 AVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLS---GPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELS 213 (241)
T ss_pred ccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccC---CCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcC
Confidence 5642 267899999999999999999999987655 3899999999999999999999999999999777632
Q ss_pred CccEEEEehhhhhCccchh
Q 023070 160 GCEGVLSAESLLENPALFA 178 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf~ 178 (287)
|++||.+||++|..-.-+.
T Consensus 214 G~~GvIvG~ALy~g~~~l~ 232 (241)
T COG0106 214 GVEGVIVGRALYEGKFTLE 232 (241)
T ss_pred CCcEEEEehHHhcCCCCHH
Confidence 8999999999998766443
No 66
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.40 E-value=1.2e-12 Score=122.44 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
.+|+++.++++++++. + |++|+|+ +..+..++++.+.++|++.|++|+||.++.+..+ ..+|..+.++++..++
T Consensus 115 ~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~-~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 115 IKPELITERIAEIRDA-G--VIVAVSL--SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSK-EGEPLNLKEFIYELDV 188 (368)
T ss_pred CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCC-cCCHHHHHHHHHHCCC
Confidence 4699999999999986 3 5566666 3356789999999999999999999988765431 1278888888878899
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
|||+ |+|.|++++.++++ +|||+||+|++-
T Consensus 189 pVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 189 PVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999 89999999999998 799999999874
No 67
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.39 E-value=1.8e-11 Score=112.47 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHcCCC--CEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~--d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
|.+++++.++.+++++|+ |.|-|...- .+.+.+.++++.+++.. ++||.++ +. .+.
T Consensus 93 g~~~~~~~~~~~Lv~ag~~~d~i~iD~a~---------------gh~~~~~e~I~~ir~~~p~~~vi~g-----~V-~t~ 151 (326)
T PRK05458 93 GVKDDEYDFVDQLAAEGLTPEYITIDIAH---------------GHSDSVINMIQHIKKHLPETFVIAG-----NV-GTP 151 (326)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CchHHHHHHHHHHHhhCCCCeEEEE-----ec-CCH
Confidence 346899999999999954 999986432 24567788899999887 5888887 11 135
Q ss_pred HHHHHHHHcCCCEEEEe---ccCCCC-cCCCCccccHH--HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 94 KYAKMLEDAGCSLLAVH---GRTRDE-KDGKKFRADWN--AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh---~rt~~~-~~~~~~~~~~~--~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+-++.+.++|+|++.|+ |+...+ .....+.++|. .++.+++.+++|||++|||+++.|+.++|. .|||+||+|
T Consensus 152 e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG 230 (326)
T PRK05458 152 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIG 230 (326)
T ss_pred HHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEec
Confidence 66788899999999886 332111 11122356776 488888888999999999999999999999 499999999
Q ss_pred hhhhh
Q 023070 168 ESLLE 172 (287)
Q Consensus 168 R~~l~ 172 (287)
+.+..
T Consensus 231 ~~~~~ 235 (326)
T PRK05458 231 SLFAG 235 (326)
T ss_pred hhhcC
Confidence 88874
No 68
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.37 E-value=1.9e-11 Score=112.08 Aligned_cols=137 Identities=22% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.++...|..-.....+++.+++.|.+++|.|. ++++.+++. ++.|...+.
T Consensus 62 ~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~--- 117 (307)
T TIGR03151 62 DKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVA--- 117 (307)
T ss_pred CCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcC---
Confidence 56777777665544322222245667888877665542 355555544 666666542
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+.++.++++|+|.|++||+...+..+ ...+|..++++++.+++|||++|||.+++++.+++. .|||+|++|
T Consensus 118 ----s~~~a~~a~~~GaD~Ivv~g~eagGh~g--~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~-~GA~gV~iG 190 (307)
T TIGR03151 118 ----SVALAKRMEKAGADAVIAEGMESGGHIG--ELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFA-LGAEAVQMG 190 (307)
T ss_pred ----CHHHHHHHHHcCCCEEEEECcccCCCCC--CCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCCEeecc
Confidence 2467889999999999999996654322 135799999999999999999999999999999998 699999999
Q ss_pred hhhhhCcc
Q 023070 168 ESLLENPA 175 (287)
Q Consensus 168 R~~l~nP~ 175 (287)
+.++.-+.
T Consensus 191 t~f~~t~E 198 (307)
T TIGR03151 191 TRFLCAKE 198 (307)
T ss_pred hHHhcccc
Confidence 99987554
No 69
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.36 E-value=1.3e-11 Score=114.69 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=110.9
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---cc------------------ccccc-----
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NY------------------GAFLM----- 58 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~------------------G~~l~----- 58 (287)
+.|..+|+.-. |.+......+.++ .|+..|=+...+|.. +..++ ++ |....
T Consensus 124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (351)
T cd04737 124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA 203 (351)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence 35789999874 5555555555554 599998888766552 11110 00 00000
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
-++.+..+.++.+++.+++||.+|- . ...+.++.+.++|+|+|+| ||+.. ...++..++.+.++++.+
T Consensus 204 ~~~~~~~~~l~~lr~~~~~PvivKg---v---~~~~dA~~a~~~G~d~I~vsnhGGr~----ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 204 AKQKLSPADIEFIAKISGLPVIVKG---I---QSPEDADVAINAGADGIWVSNHGGRQ----LDGGPASFDSLPEIAEAV 273 (351)
T ss_pred ccCCCCHHHHHHHHHHhCCcEEEec---C---CCHHHHHHHHHcCCCEEEEeCCCCcc----CCCCchHHHHHHHHHHHh
Confidence 0123445777888888899999992 1 2346788899999999999 66422 223467788999998887
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++|||++|||++..|+.++|. .|||+||+||+++...
T Consensus 274 ~~~i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~~l 312 (351)
T cd04737 274 NHRVPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLYGL 312 (351)
T ss_pred CCCCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHH
Confidence 699999999999999999999 7999999999888644
No 70
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.34 E-value=2.7e-11 Score=112.83 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=109.7
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh----cC----------------cccccc-----cC
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR----RG----------------NYGAFL-----MD 59 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~----~~----------------~~G~~l-----~~ 59 (287)
+.|...||.-. |.+...+..+.++ .|+.+|=|..-+|.. +.. .+ +.+... ..
T Consensus 132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (367)
T TIGR02708 132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSA 211 (367)
T ss_pred CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcccc
Confidence 45899999884 4454455666664 599998887666642 110 00 001000 01
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhC-
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL- 136 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~- 136 (287)
++.+.-+-++.+++.+++||++| |.. ..+.++.+.++|+++|.| ||+. +.+.+++.|+.+.++++.+
T Consensus 212 ~~~~~w~~i~~l~~~~~~PvivK---Gv~---~~eda~~a~~~Gvd~I~VS~HGGr----q~~~~~a~~~~L~ei~~av~ 281 (367)
T TIGR02708 212 KQKLSPRDIEEIAGYSGLPVYVK---GPQ---CPEDADRALKAGASGIWVTNHGGR----QLDGGPAAFDSLQEVAEAVD 281 (367)
T ss_pred CCCCCHHHHHHHHHhcCCCEEEe---CCC---CHHHHHHHHHcCcCEEEECCcCcc----CCCCCCcHHHHHHHHHHHhC
Confidence 23333466888888889999999 322 256788999999999876 6642 2334577899999999876
Q ss_pred -CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 137 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 137 -~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++|||++|||++..|+.++|. .|||+|||||+++.
T Consensus 282 ~~i~vi~dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 282 KRVPIVFDSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred CCCcEEeeCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 499999999999999999999 79999999998874
No 71
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.33 E-value=1.2e-11 Score=110.54 Aligned_cols=175 Identities=21% Similarity=0.233 Sum_probs=121.7
Q ss_pred CCCCCCCEEEEecCCC-----HHHHHHHHHHHcCCCCEEEEeccCChh-hhhcCcccccccCChHHHHHHHHHHhh---c
Q 023070 4 LPPEDRPLFVQFCAND-----PEILLNAARRVEPYCDYVDINLGCPQR-IARRGNYGAFLMDNLPLVKSLVEKLAL---N 74 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~-----~~~~~~aA~~~~~g~d~IdiN~gcP~~-~~~~~~~G~~l~~~~~~~~~iv~~v~~---~ 74 (287)
+++.-.++.|.++-|. ..++++-.+..-..+|...||..||++ -.|.-++-+.| .+++.+++.+--+ .
T Consensus 174 ~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGlr~lq~k~~L---~~ll~~v~~a~~~~~~~ 250 (398)
T KOG1436|consen 174 YPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGLRSLQKKSDL---RKLLTKVVQARDKLPLG 250 (398)
T ss_pred CCCccccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcchhhhhhHHHH---HHHHHHHHHHHhccccC
Confidence 4455566888887654 345555555555678999999999994 33333221111 1222333333211 2
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC------------cCCCCcc----ccHHHHHHHHhhC--
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFR----ADWNAIKAVKNAL-- 136 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~------------~~~~~~~----~~~~~i~~i~~~~-- 136 (287)
...|+.+|+......++..+++..+.+..+|.++|.+-|.+- +.+-+|+ ...+.++.+...+
T Consensus 251 ~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g 330 (398)
T KOG1436|consen 251 KKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRG 330 (398)
T ss_pred CCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccC
Confidence 246999999887677788899999999999999997654321 1112222 2456777777765
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh-hhCccchhchhh
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 182 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~-l~nP~lf~~~~~ 182 (287)
+||||++|||.|.+||.+.+. .||..|++++++ +..|-++.+|+.
T Consensus 331 ~IpiIG~GGV~SG~DA~Ekir-aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 331 KIPIIGCGGVSSGKDAYEKIR-AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred CCceEeecCccccHhHHHHHh-cCchHHHHHHHHhhcCchhHHHHHH
Confidence 699999999999999999998 699999999997 689999998864
No 72
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=99.30 E-value=8.3e-11 Score=104.53 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=116.3
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCC----hHHHHHHHHHH-hhccCCcEEEEe
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKI 83 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~----~~~~~~iv~~v-~~~~~~pv~vKi 83 (287)
.++-+|++|.-- . .++.++++.|++-|-|| +...++ |+++.++++.. .+.+-+.+.+|.
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 356799999875 3 66666888999999986 455566 99999999988 444333344441
Q ss_pred cC--------CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 84 RV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 84 R~--------g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
.- ||. ..++.+++..+.+.|+..|.++...++++.. .+|++.++++.+.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~---G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRL---GIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCccc---CCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 12 453 2367888899999999999999998887654 389999999999999999999999999999
Q ss_pred HHHHHhc-CccEEEEehhh--hhCccch
Q 023070 153 QKCLEET-GCEGVLSAESL--LENPALF 177 (287)
Q Consensus 153 ~~~l~~~-gad~VmiGR~~--l~nP~lf 177 (287)
.++.+.+ |+.+|.+|+++ |.+-.=+
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~~y~g~~~l 250 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALDIFGGNLPY 250 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHHHhCCCccH
Confidence 9888754 78999999999 5554433
No 73
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=99.29 E-value=5.4e-11 Score=105.60 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=111.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec-C---
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V--- 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR-~--- 85 (287)
++-+|++|. .....++...++.|+|-|-+ |+...++|+++.++.+...+. +.+++..+ -
T Consensus 74 ~~~v~vgGG-Irs~e~~~~~l~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~--ivvslD~k~~g~~ 136 (243)
T TIGR01919 74 VVVEELSGG-RRDDSSLRAALTGGRARVNG--------------GTAALENPWWAAAVIRYGGDI--VAVGLDVLEDGEW 136 (243)
T ss_pred CCCEEEcCC-CCCHHHHHHHHHcCCCEEEE--------------CchhhCCHHHHHHHHHHcccc--EEEEEEEecCCce
Confidence 455677663 23333444455668887755 466678999999998887544 33444443 1
Q ss_pred ------CCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH--
Q 023070 86 ------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC-- 155 (287)
Q Consensus 86 ------g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~-- 155 (287)
||. ..+..++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||+|.+|+.++
T Consensus 137 ~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~---G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~ 213 (243)
T TIGR01919 137 HTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG---GPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKY 213 (243)
T ss_pred EEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC---CcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHh
Confidence 343 2367899999999999999999988887655 389999999999999999999999999999977
Q ss_pred HHhcCccEEEEehhhhhCccchh
Q 023070 156 LEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 156 l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+...|+++|++|++++.+--=+.
T Consensus 214 l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 214 LDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred hccCCeeEEEEhHHHHcCCCCHH
Confidence 43469999999999987764333
No 74
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.29 E-value=1.5e-11 Score=109.87 Aligned_cols=89 Identities=21% Similarity=0.364 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+||.+++.+... +.+|+.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 478899999999999999999999865333 58999999999999999999999999999999999 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 ~l~~p~~~~ei~~ 118 (253)
T PRK02083 106 AVANPELISEAAD 118 (253)
T ss_pred HhhCcHHHHHHHH
Confidence 9999999998865
No 75
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.28 E-value=1.5e-10 Score=102.02 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=99.8
Q ss_pred CCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.++++.+++ +.+.+.++ ..+.|+|+|.+|.++|. ++++.+++ .++++.+++..
T Consensus 53 ~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~~~--------------------~~~~~~~~-~~i~~i~~v~~ 111 (236)
T cd04730 53 DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGPPA--------------------EVVERLKA-AGIKVIPTVTS 111 (236)
T ss_pred CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCCCH--------------------HHHHHHHH-cCCEEEEeCCC
Confidence 4688899999875 33444444 45669999999866332 22333332 35777776421
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.+.++.+.+.|+++|.++++.............++.++++++.+++||+++|||++++++.++++ .|+|+|+
T Consensus 112 -------~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~-~GadgV~ 183 (236)
T cd04730 112 -------VEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQ 183 (236)
T ss_pred -------HHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHH-cCCcEEE
Confidence 24466777899999999887432211111124578999999888999999999999999999998 6999999
Q ss_pred EehhhhhCccc
Q 023070 166 SAESLLENPAL 176 (287)
Q Consensus 166 iGR~~l~nP~l 176 (287)
+|++++..+..
T Consensus 184 vgS~l~~~~e~ 194 (236)
T cd04730 184 MGTRFLATEES 194 (236)
T ss_pred EchhhhcCccc
Confidence 99999877653
No 76
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.28 E-value=1.2e-10 Score=107.62 Aligned_cols=144 Identities=24% Similarity=0.195 Sum_probs=106.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
.+.+.+..|.+++....+..++++|+|.|+||+.. | +++.+.++++.+++.. ++||.+ |.
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~ 142 (325)
T cd00381 82 RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAH----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GN 142 (325)
T ss_pred CceEEEecCCChhHHHHHHHHHhcCCCEEEEECCC----------C-----CcHHHHHHHHHHHHHCCCceEEE----CC
Confidence 34566777888888888888889999999998631 2 2356678888888765 355555 21
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEecc------CCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-.+.+.++.+.++|+|+|.|+.. ++.. .+.+.++|..+..+.+.. ++|||++|||.++.|+.+++.
T Consensus 143 --v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~--~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla- 217 (325)
T cd00381 143 --VVTAEAARDLIDAGADGVKVGIGPGSICTTRIV--TGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA- 217 (325)
T ss_pred --CCCHHHHHHHHhcCCCEEEECCCCCcCccccee--CCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH-
Confidence 23456688888999999998632 2211 223456788777776654 699999999999999999998
Q ss_pred cCccEEEEehhhhhCccc
Q 023070 159 TGCEGVLSAESLLENPAL 176 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~l 176 (287)
.|||+||+|+.+..-..-
T Consensus 218 ~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 218 AGADAVMLGSLLAGTDES 235 (325)
T ss_pred cCCCEEEecchhcccccC
Confidence 799999999999875543
No 77
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.27 E-value=2.3e-11 Score=107.99 Aligned_cols=89 Identities=22% Similarity=0.382 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|++|.++..... .+.+++.++++++.+++||+++|||+|.+|+.++++ .|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~---~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASSEG---RETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccccc---CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECch
Confidence 47889999999999999999999875432 257999999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 103 ~~~~p~~~~~i~~ 115 (243)
T cd04731 103 AVENPELIREIAK 115 (243)
T ss_pred hhhChHHHHHHHH
Confidence 9999999998754
No 78
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.26 E-value=2.1e-10 Score=101.32 Aligned_cols=139 Identities=13% Similarity=0.167 Sum_probs=109.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g 86 (287)
+|++| ....+.++.++++.|++-|-| |+...++|+++.++.+...+. +-+++-.+- |
T Consensus 79 i~vGG-GIrs~e~v~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~g 141 (234)
T PRK13587 79 IEVGG-GIRTKSQIMDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNG 141 (234)
T ss_pred EEEcC-CcCCHHHHHHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecC
Confidence 67755 334455555566778887755 467788999999999887433 445554443 3
Q ss_pred CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 87 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 87 ~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
|. ..+..++++.+++.|+..+.++...++++.. ..|++.++++.+.+++||++.|||+|++|+.++++ .|+++
T Consensus 142 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~ 217 (234)
T PRK13587 142 WEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMS---GPNFELTGQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHA 217 (234)
T ss_pred CcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCC---ccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCE
Confidence 42 2356899999999999999999888876554 38899999999989999999999999999999997 69999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|.+|++++.
T Consensus 218 vivG~a~~~ 226 (234)
T PRK13587 218 AIIGKAAHQ 226 (234)
T ss_pred EEEhHHHHh
Confidence 999999986
No 79
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.24 E-value=2.2e-10 Score=101.48 Aligned_cols=142 Identities=15% Similarity=0.151 Sum_probs=106.8
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------F 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g 86 (287)
+|++|. ...+.++.+.++.|++-|-| |+...++|+++.++ .+... .+.+++..+- |
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~--~ivvslD~k~g~v~~~g 137 (241)
T PRK14114 76 IQIGGG-IRSLDYAEKLRKLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDV--EPVFSLDTRGGKVAFKG 137 (241)
T ss_pred EEEecC-CCCHHHHHHHHHCCCCEEEE--------------CchhhCCHHHHHHH-HHhCC--CEEEEEEccCCEEeeCC
Confidence 566553 23334444455667777655 46677899999999 54432 2456665543 3
Q ss_pred CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc----
Q 023070 87 PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET---- 159 (287)
Q Consensus 87 ~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~---- 159 (287)
|. ..++.++++.+++.|+..|.++...++++.. .+|++.++++++.+++|||++|||.|.+|+.++.+..
T Consensus 138 w~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~---G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~ 214 (241)
T PRK14114 138 WLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQ---EHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETN 214 (241)
T ss_pred CeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCC---CcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccC
Confidence 42 2357899999999999999999888887654 3899999999999999999999999999999888741
Q ss_pred C-ccEEEEehhhhhCcc
Q 023070 160 G-CEGVLSAESLLENPA 175 (287)
Q Consensus 160 g-ad~VmiGR~~l~nP~ 175 (287)
| ++||.+|++++.+--
T Consensus 215 g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 215 GLLKGVIVGRAFLEGIL 231 (241)
T ss_pred CcEEEEEEehHHHCCCC
Confidence 5 999999999987653
No 80
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=99.24 E-value=1.3e-10 Score=102.41 Aligned_cols=145 Identities=24% Similarity=0.337 Sum_probs=108.0
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEec----
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIR---- 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR---- 84 (287)
++-+|++|. ...+..+.++++.|++.|-|| +...++|+++.++.+.... .+-+.+.+|-.
T Consensus 73 ~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~ 137 (229)
T PF00977_consen 73 GIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGSQRIVVSLDARDGYKVA 137 (229)
T ss_dssp SSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEE
T ss_pred CccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEE
Confidence 456788664 345556666777888877764 6677899999999998865 33333333432
Q ss_pred C-CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 85 V-FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 85 ~-g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. +|.. .+..++++.+.+.|+..+.++.-.++++.. .+|++.++++++..++|||++|||.+.+|+.++.+ .|
T Consensus 138 ~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~---G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G 213 (229)
T PF00977_consen 138 TNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ---GPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKK-AG 213 (229)
T ss_dssp ETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS---S--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHH-TT
T ss_pred ecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC---CCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHH-CC
Confidence 0 3432 368899999999999999999988887655 37899999999888999999999999999999986 69
Q ss_pred ccEEEEehhhhhC
Q 023070 161 CEGVLSAESLLEN 173 (287)
Q Consensus 161 ad~VmiGR~~l~n 173 (287)
+++|++|++++.+
T Consensus 214 ~~gvivg~al~~g 226 (229)
T PF00977_consen 214 IDGVIVGSALHEG 226 (229)
T ss_dssp ECEEEESHHHHTT
T ss_pred CcEEEEehHhhCC
Confidence 9999999999864
No 81
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.23 E-value=2.7e-10 Score=105.90 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=110.7
Q ss_pred CCCEEEEec-CCCHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCcc-------------------cccc---cC
Q 023070 8 DRPLFVQFC-ANDPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNY-------------------GAFL---MD 59 (287)
Q Consensus 8 ~~p~~~Qi~-g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~-------------------G~~l---~~ 59 (287)
+.|+.+||. ..|.+...+..+.++ .|+++|-|+...|.. +.. +.++ +... ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 468899996 457777777777765 499999999888852 110 0000 0000 11
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hC
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---AL 136 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~ 136 (287)
++....+.++.+++.++.||.+| +. ...+.++.+.++|+++|+|.+....+.. ....-+..+..+++ .+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK---gv---~~~~dA~~a~~~G~d~I~vsnhgG~~~d--~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK---GV---QTVEDAVLAAEYGVDGIVLSNHGGRQLD--TAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE---cC---CCHHHHHHHHHcCCCEEEEECCCcccCC--CCCCHHHHHHHHHHHHHHh
Confidence 34456678899999899999999 22 2356678899999999999643211111 11233445555554 22
Q ss_pred --CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 --~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++|||+.|||++..|+.++|. .|||+|+|||+++..+.
T Consensus 269 ~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 269 FDKIEVYVDGGVRRGTDVLKALC-LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 599999999999999999999 59999999999998664
No 82
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=99.21 E-value=9.4e-10 Score=101.33 Aligned_cols=136 Identities=13% Similarity=0.182 Sum_probs=114.1
Q ss_pred CCCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEe
Q 023070 6 PEDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKI 83 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKi 83 (287)
.+..|+..|+++.+|+.+.+.++ ..+.||+.|.||+|. +++...+.++++++.+ ++++.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 121 PRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeC
Confidence 45678888999999999988776 556799999999762 2355567888888766 48899999
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.+|+.+++.++++.+++.|+.+| ++... +.+|+.++++++.+++||++++.+.+++++.++++.+++|.
T Consensus 185 n~~~~~~~A~~~~~~l~~~~l~~i-------EeP~~---~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~ 254 (316)
T cd03319 185 NQGWTPEEAVELLRELAELGVELI-------EQPVP---AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDG 254 (316)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEE-------ECCCC---CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCE
Confidence 999999999999999999999888 22211 46889999999999999999999999999999999889999
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
|++-
T Consensus 255 v~~~ 258 (316)
T cd03319 255 INIK 258 (316)
T ss_pred EEEe
Confidence 9873
No 83
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.16 E-value=1.6e-10 Score=103.37 Aligned_cols=89 Identities=20% Similarity=0.357 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+++..+..... ...+++.++++++.+++||+++|||+|.+|+.+++. .||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~~---~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSEG---RTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccc---ChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 47889999999999999999998876432 257999999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999998753
No 84
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.15 E-value=1.6e-09 Score=99.28 Aligned_cols=140 Identities=19% Similarity=0.231 Sum_probs=101.4
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCC--CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPY--CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g--~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
++.+.+ |..++++.++..++++| .|.|-+-.. . .+.+.+.+.++.+++....|+.++=..
T Consensus 84 ~v~~Sv-G~t~e~~~r~~~lv~a~~~~d~i~~D~a--------h-------g~s~~~~~~i~~i~~~~p~~~vi~GnV-- 145 (321)
T TIGR01306 84 FASISV-GVKACEYEFVTQLAEEALTPEYITIDIA--------H-------GHSNSVINMIKHIKTHLPDSFVIAGNV-- 145 (321)
T ss_pred EEEEEc-CCCHHHHHHHHHHHhcCCCCCEEEEeCc--------c-------CchHHHHHHHHHHHHhCCCCEEEEecC--
Confidence 344554 67888899999888887 577665421 0 145778889999998876664444212
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe---ccCCCCc-CCCCccccH--HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH---GRTRDEK-DGKKFRADW--NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh---~rt~~~~-~~~~~~~~~--~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
.+.+.++.+.++|++.|.|+ |++...+ ....+..+| ..+.++++..++|||++|||++..|+.++|. .||
T Consensus 146 ---~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa-~GA 221 (321)
T TIGR01306 146 ---GTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSIR-FGA 221 (321)
T ss_pred ---CCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHHH-cCC
Confidence 25677899999999999997 4432111 111122334 5788888888999999999999999999999 599
Q ss_pred cEEEEehhhh
Q 023070 162 EGVLSAESLL 171 (287)
Q Consensus 162 d~VmiGR~~l 171 (287)
|+||+||.+-
T Consensus 222 d~Vmig~~~a 231 (321)
T TIGR01306 222 SMVMIGSLFA 231 (321)
T ss_pred CEEeechhhc
Confidence 9999998764
No 85
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.14 E-value=1.2e-09 Score=95.60 Aligned_cols=127 Identities=20% Similarity=0.315 Sum_probs=91.7
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH--HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHc
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP--LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~--~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~ 102 (287)
++-.+.+.|+|.|-++... ..+|+ .+.++++.+++..++|+.+.+. +.+.+..+.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~ 142 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKL 142 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHc
Confidence 4444556788888887421 11232 6778888777655688887642 22345778889
Q ss_pred CCCEEEE--eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 103 GCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 103 G~~~I~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|++++.+ +|++.... .....+++.++++++.+++||+++|||++++++.++++ .|||+|++|++++...+
T Consensus 143 G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 143 GFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred CCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEchHHhChHh
Confidence 9999965 45544322 12246789999999988999999999999999999999 58999999999765444
No 86
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=99.14 E-value=1.6e-09 Score=95.75 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=108.2
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC-----
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF----- 86 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g----- 86 (287)
-+|++|. ...+..+.+.++.|++-|-|| +...++ +++.++++...+. .+-+++-.+-+
T Consensus 80 ~v~vgGG-ir~~edv~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~ 142 (233)
T cd04723 80 GLWVDGG-IRSLENAQEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKP 142 (233)
T ss_pred CEEEecC-cCCHHHHHHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccc
Confidence 3666653 334555555666777777664 555677 9999999988541 34556655544
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+..+..++++.+++. ++.++++...+..+.. ..|++.++++.+.+++||+++|||+|.+|+.++++ .|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~~~---g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGSGQ---GPDLELLERLAARADIPVIAAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCccccCC---CcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 2345678899999999 9999998877765443 47899999999999999999999999999999998 59999999
Q ss_pred ehhhhhCc
Q 023070 167 AESLLENP 174 (287)
Q Consensus 167 GR~~l~nP 174 (287)
|++++.+-
T Consensus 218 Gsal~~g~ 225 (233)
T cd04723 218 ASALHDGG 225 (233)
T ss_pred ehHHHcCC
Confidence 99998763
No 87
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.12 E-value=3.6e-10 Score=99.48 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|+..+.... ..+.+++.++++++.+++||+++|||+|+++++++++ .|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 5788999999999999999998776421 1257899999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999998765
No 88
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.12 E-value=9.7e-10 Score=92.51 Aligned_cols=129 Identities=19% Similarity=0.285 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED 101 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~ 101 (287)
.+.++-.+++.|+|.|-+-.- .-.||+.+.++++.+++.. ..+...+.. ++-+..+.+
T Consensus 53 T~~ev~~l~~aGadIIAlDaT--------------~R~Rp~~l~~li~~i~~~~-~l~MADist-------~ee~~~A~~ 110 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT--------------DRPRPETLEELIREIKEKY-QLVMADIST-------LEEAINAAE 110 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S--------------SSS-SS-HHHHHHHHHHCT-SEEEEE-SS-------HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEEecC--------------CCCCCcCHHHHHHHHHHhC-cEEeeecCC-------HHHHHHHHH
Confidence 355566677889998888631 1246788999999999887 788877532 444677889
Q ss_pred cCCCEE--EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 102 AGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 102 ~G~~~I--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+|+|.| |+.|.|..... ..+|+++++++++. ++|||+-|+|+||+++.++|+ .||++|.+|. ++.+|++..
T Consensus 111 ~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~~pvIaEGri~tpe~a~~al~-~GA~aVVVGs-AITrP~~It 183 (192)
T PF04131_consen 111 LGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-DVPVIAEGRIHTPEQAAKALE-LGAHAVVVGS-AITRPQEIT 183 (192)
T ss_dssp TT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-TSEEEEESS--SHHHHHHHHH-TT-SEEEE-H-HHH-HHHHH
T ss_pred cCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-CCcEeecCCCCCHHHHHHHHh-cCCeEEEECc-ccCCHHHHH
Confidence 999999 45566665433 35899999999986 899999999999999999999 5999999995 557787543
No 89
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=99.11 E-value=2.1e-09 Score=95.57 Aligned_cols=148 Identities=16% Similarity=0.211 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHH-----HHHHHHhhccCCcEE--EEecCCCChh
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK-----SLVEKLALNLNVPVS--CKIRVFPNLQ 90 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~-----~iv~~v~~~~~~pv~--vKiR~g~~~~ 90 (287)
.+++++.++++.++.++|.||||+-||.+. .+ |..+.+.+..+. ++++++++.+++|+. +|+... ..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~--ad--G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~--~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPK--YD--GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDY--VD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCC--CC--CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchh--hh
Confidence 388999999997654599999999888763 22 556666667766 899999988889973 665541 34
Q ss_pred hHHHHHHHHHHcCCCEEEEecc-----------------------------CCCC----------------cCCCCc---
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGR-----------------------------TRDE----------------KDGKKF--- 122 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~r-----------------------------t~~~----------------~~~~~~--- 122 (287)
+..++++.+.++|++++++|.- |... .....+
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 5667778888888888888731 1000 000011
Q ss_pred ccc-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 123 RAD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 123 ~~~-~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+ .+.++++++.. +.||++.|||++++++.++++ .|||++.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 112 24677777776 589999999999999999888 59999999999874
No 90
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.11 E-value=2.1e-09 Score=94.74 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=103.2
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec-C------
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR-V------ 85 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR-~------ 85 (287)
+|++|. ...+.++.++++.|++-|-| |+...++|+++.++.+..... .+-+++..| -
T Consensus 76 v~vGGG-Irs~e~~~~~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~-~ivvslD~~~~~~v~~~ 139 (232)
T PRK13586 76 IQVGGG-IRDIEKAKRLLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSN-RVLVSIDYDNTKRVLIR 139 (232)
T ss_pred EEEeCC-cCCHHHHHHHHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCC-CEEEEEEcCCCCEEEcc
Confidence 566552 12223334445567776655 467788999999999887322 244555553 1
Q ss_pred CCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 86 FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 86 g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
||. ..+..++++.+++.|+..|.++.-.++++.. .+|++.++.+++. ..|++++|||+|.+|+.++.+ .|+|+
T Consensus 140 gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~---G~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~g 214 (232)
T PRK13586 140 GWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTK---GIDYNVKDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDY 214 (232)
T ss_pred CCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCc---CcCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCE
Confidence 342 2256799999999999999999888887654 3889999998876 556999999999999998886 69999
Q ss_pred EEEehhhhhC
Q 023070 164 VLSAESLLEN 173 (287)
Q Consensus 164 VmiGR~~l~n 173 (287)
|.+|++++.+
T Consensus 215 vivg~Aly~g 224 (232)
T PRK13586 215 IIVGMAFYLG 224 (232)
T ss_pred EEEehhhhcC
Confidence 9999999854
No 91
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.11 E-value=2.3e-09 Score=99.80 Aligned_cols=156 Identities=17% Similarity=0.105 Sum_probs=108.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhc---Cccc----------------------------
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQR-IARR---GNYG---------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~---~~~G---------------------------- 54 (287)
+.|...||.-.+.+......+.++ +||++|=+..-+|.. +..+ .++-
T Consensus 115 ~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~ 194 (361)
T cd04736 115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM 194 (361)
T ss_pred CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccc
Confidence 358999999988555555555554 599999888665552 1110 1110
Q ss_pred -------c----c-------c--cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCC
Q 023070 55 -------A----F-------L--MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR 114 (287)
Q Consensus 55 -------~----~-------l--~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~ 114 (287)
. . + .-++.+.-+.++.+++.++.|+.+| |. ...+-++.+.+.|+|+|.|++.-.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV---~~~eda~~a~~~G~d~I~VSnhGG 268 (361)
T cd04736 195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GI---VTAEDAKRCIELGADGVILSNHGG 268 (361)
T ss_pred ccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cC---CCHHHHHHHHHCCcCEEEECCCCc
Confidence 0 0 0 0123334467888888889999999 21 234557788899999999843222
Q ss_pred CCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 115 DEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 115 ~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+. ...++.++.+.++++.+++|||+.|||++..|+.++|. .|||+||+||+++.
T Consensus 269 rql--d~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~ 323 (361)
T cd04736 269 RQL--DDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKALA-LGANAVLLGRATLY 323 (361)
T ss_pred CCC--cCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 121 11245678888998888999999999999999999999 69999999999874
No 92
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-09 Score=94.44 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC-C----C---
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV-F----P--- 87 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~-g----~--- 87 (287)
|........+.+++..|+|-|.|| ++.+.+|+++.++-+....++ -+.|..|-+. | |
T Consensus 80 GGGI~s~eD~~~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~ 145 (256)
T COG0107 80 GGGIRSVEDARKLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVF 145 (256)
T ss_pred cCCcCCHHHHHHHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEE
Confidence 444455555667888999999999 445789999999988876554 3444555542 1 1
Q ss_pred -------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 -------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+.-+++++++.+++.|+..|.++...+++... .+|++.++.+++.+++|||++||..++++..+.+..+.
T Consensus 146 ~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~---GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~ 222 (256)
T COG0107 146 THGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKA---GYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGK 222 (256)
T ss_pred ecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccccc---CcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcC
Confidence 22478999999999999999999887776554 48999999999999999999999999999999999888
Q ss_pred ccEEEEeh
Q 023070 161 CEGVLSAE 168 (287)
Q Consensus 161 ad~VmiGR 168 (287)
||++..+.
T Consensus 223 adAaLAAs 230 (256)
T COG0107 223 ADAALAAS 230 (256)
T ss_pred ccHHHhhh
Confidence 99887654
No 93
>PLN02535 glycolate oxidase
Probab=99.09 E-value=2.7e-09 Score=99.58 Aligned_cols=159 Identities=21% Similarity=0.182 Sum_probs=109.1
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---ccc--------------------cc----c
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NYG--------------------AF----L 57 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~G--------------------~~----l 57 (287)
+.|...|+.-. |.+...+..+.++ +||.+|=+..-+|.. +..++ ++. +. .
T Consensus 123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (364)
T PLN02535 123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA 202 (364)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence 45899999874 4666666666664 599998888766662 11111 000 00 0
Q ss_pred --cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 58 --MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 58 --~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
.-++.+.-+-++.+++.++.||.+|-= -..+-++.+.++|+|+|.|.+....+ ...+++....+.++++.
T Consensus 203 ~~~~~~~~tW~~i~~lr~~~~~PvivKgV------~~~~dA~~a~~~GvD~I~vsn~GGr~--~d~~~~t~~~L~ev~~a 274 (364)
T PLN02535 203 SETFDASLSWKDIEWLRSITNLPILIKGV------LTREDAIKAVEVGVAGIIVSNHGARQ--LDYSPATISVLEEVVQA 274 (364)
T ss_pred HhccCCCCCHHHHHHHHhccCCCEEEecC------CCHHHHHHHHhcCCCEEEEeCCCcCC--CCCChHHHHHHHHHHHH
Confidence 002334456678888888999999921 11244788889999999996432211 12224446778888776
Q ss_pred C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 136 L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 136 ~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+ ++|||+.|||++..|+.++|. .|||+|++||+++..+.
T Consensus 275 v~~~ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 275 VGGRVPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPVIYGLA 315 (364)
T ss_pred HhcCCCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHHHhhhh
Confidence 5 699999999999999999998 59999999999987655
No 94
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.08 E-value=2.9e-09 Score=93.22 Aligned_cols=121 Identities=17% Similarity=0.269 Sum_probs=86.2
Q ss_pred HHHcCCCCEEEEeccCChhhhhcCcccccccCCh--HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 28 RRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNL--PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 28 ~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~--~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
.+.+.|+|.|-+.. |. ...| +.+.++++.+++..++++.+.+. + .+-++.+.+.|++
T Consensus 83 ~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d 141 (221)
T PRK01130 83 ALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFD 141 (221)
T ss_pred HHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCC
Confidence 34567888777642 11 1122 55677888877645677776532 2 2335678899999
Q ss_pred EEEEe--ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 106 LLAVH--GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 106 ~I~vh--~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.++ +.+.... .....+++.++++++.+++||++.|||++++++.++++ .|+|+|++|++++.
T Consensus 142 ~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~-~GadgV~iGsai~~ 207 (221)
T PRK01130 142 FIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALE-LGAHAVVVGGAITR 207 (221)
T ss_pred EEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEchHhcC
Confidence 99774 3332211 12246789999999999999999999999999999998 58999999998764
No 95
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=99.05 E-value=1.7e-08 Score=90.02 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=45.1
Q ss_pred cccHHHHHHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 123 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++.++++++..++||+ +.|||.|++++..+++ .|||+|++|++++.
T Consensus 183 ~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 183 RVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 3678999999998899998 9999999999999998 69999999999884
No 96
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=99.03 E-value=4.6e-09 Score=93.54 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=94.4
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHc
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA 102 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~ 102 (287)
|.++-.+.+.|+|.|| |-. -.+| +.+++..++...+.|+.+.++. ++-+.+..+.
T Consensus 77 ~~Ea~~L~eaGvDiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st-------leEal~a~~~ 131 (283)
T cd04727 77 FVEAQILEALGVDMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN-------LGEALRRISE 131 (283)
T ss_pred HHHHHHHHHcCCCEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC-------HHHHHHHHHC
Confidence 6777667788999996 111 1234 5788888888778999988653 3346667789
Q ss_pred CCCEE--EEeccCCC------------------CcC--------CCCccccHHHHHHHHhhCCCcEE--EecCCCCHHHH
Q 023070 103 GCSLL--AVHGRTRD------------------EKD--------GKKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDV 152 (287)
Q Consensus 103 G~~~I--~vh~rt~~------------------~~~--------~~~~~~~~~~i~~i~~~~~ipVi--~nGgI~s~~da 152 (287)
|+|.| ++.|.|.. ..+ .....++|+.++++++..++||+ +.|||.+++++
T Consensus 132 Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena 211 (283)
T cd04727 132 GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADA 211 (283)
T ss_pred CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHH
Confidence 99999 55455554 000 11124789999999999999997 99999999999
Q ss_pred HHHHHhcCccEEEEehhhhhC
Q 023070 153 QKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~n 173 (287)
.++++ .|||+|++|++++.-
T Consensus 212 ~~v~e-~GAdgVaVGSAI~~a 231 (283)
T cd04727 212 ALMMQ-LGADGVFVGSGIFKS 231 (283)
T ss_pred HHHHH-cCCCEEEEcHHhhcC
Confidence 99998 699999999999853
No 97
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=99.03 E-value=1.4e-08 Score=89.00 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=81.6
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecC------CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 127 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~ 127 (287)
|+..+++|+++.++.. .+++-.+- +|. +...++.+.+.+.|+ .+.++.-.+.++.. .+|++
T Consensus 108 gT~a~~~p~~l~~~~~--------vvslD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dGt~~---G~d~e 174 (221)
T TIGR00734 108 ATETLDITELLRECYT--------VVSLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVGTMK---GPNLE 174 (221)
T ss_pred cChhhCCHHHHHHhhh--------EEEEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCccccCC---CCCHH
Confidence 5666789998887651 23333321 443 356677888888998 78777766665433 47899
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 128 ~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.++++++.+++|||++|||+|++|+.++.+ .|+|+|++|++++.+
T Consensus 175 li~~i~~~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g 219 (221)
T TIGR00734 175 LLTKTLELSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHHHhhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCC
Confidence 999999999999999999999999998776 699999999998764
No 98
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=99.01 E-value=1.1e-08 Score=90.61 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=107.3
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCC----hHHHHHHHHHH-hhccCCcEEEEec
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDN----LPLVKSLVEKL-ALNLNVPVSCKIR 84 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~----~~~~~~iv~~v-~~~~~~pv~vKiR 84 (287)
.+-+|++|.=- . ..+.+.++.|++.|-|| +.+.++ |+++.++.+.. .+.+-+.+.+|..
T Consensus 76 ~~~v~vGGGIr-~-e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~ 139 (253)
T TIGR02129 76 PGGLQVGGGIN-D-TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT 139 (253)
T ss_pred CCCEEEeCCcC-H-HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc
Confidence 35678887653 3 56666788899999885 444444 88999998888 3443333344410
Q ss_pred -C--------CCCh---hhHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHH
Q 023070 85 -V--------FPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 151 (287)
Q Consensus 85 -~--------g~~~---~~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~d 151 (287)
- ||.. .++. ++++.+++. +..|.++...++++.. .+|++.++++++.+++|||++||+.|.+|
T Consensus 140 ~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl~---G~dlel~~~l~~~~~ipVIASGGv~s~eD 215 (253)
T TIGR02129 140 QDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLCK---GIDEELVSKLGEWSPIPITYAGGAKSIDD 215 (253)
T ss_pred CCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCccc---cCCHHHHHHHHhhCCCCEEEECCCCCHHH
Confidence 1 4532 2566 899999999 9999999999887655 38999999999999999999999999999
Q ss_pred HHHHHHh-cCccEEEEehhhhh
Q 023070 152 VQKCLEE-TGCEGVLSAESLLE 172 (287)
Q Consensus 152 a~~~l~~-~gad~VmiGR~~l~ 172 (287)
+.++.+. .|..++.+|++++.
T Consensus 216 i~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 216 LDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHhcCCCCcEEeeehHHH
Confidence 9988432 36777999999864
No 99
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.94 E-value=1.8e-08 Score=98.59 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=109.8
Q ss_pred EEEEecCC--CHHH--------HHHHHHHHcCCCCEEEEecc---CChhhhhcCcccccccCChHHHHHHHHHHhhccCC
Q 023070 11 LFVQFCAN--DPEI--------LLNAARRVEPYCDYVDINLG---CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 77 (287)
Q Consensus 11 ~~~Qi~g~--~~~~--------~~~aA~~~~~g~d~IdiN~g---cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 77 (287)
+=+|++|. +.++ +..+.++++.|+|-|-||-. .|-. -|-+.-..+|+++.++.+...+.+ +
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~-----~~~~~~~~~p~~i~~~~~~fg~q~-i 388 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEE-----YIASGVKTGKTSIEQISRVYGNQA-V 388 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhh-----hhccccccCHHHHHHHHHHcCCce-E
Confidence 34688775 3333 46666788899999999831 1210 112223467899999999885431 2
Q ss_pred cEEEEecC----------------------------------CC---ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC
Q 023070 78 PVSCKIRV----------------------------------FP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 120 (287)
Q Consensus 78 pv~vKiR~----------------------------------g~---~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~ 120 (287)
-|++..+- || +..+++++++.+++.|+..|.++...++++..
T Consensus 389 vvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~- 467 (538)
T PLN02617 389 VVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGK- 467 (538)
T ss_pred EEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccccc-
Confidence 22222211 22 23477899999999999999999888887654
Q ss_pred CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 121 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 121 ~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
..|++.++.+++.+++|||++||+.+++|+.++++.+++|+++.|.
T Consensus 468 --G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 468 --GFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred --CcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 4899999999999999999999999999999999988999999884
No 100
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.93 E-value=2.4e-08 Score=93.78 Aligned_cols=155 Identities=21% Similarity=0.188 Sum_probs=104.8
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhhcC---ccc---------------------------
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IARRG---NYG--------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~~~---~~G--------------------------- 54 (287)
+.|...||.-. |.+...+..+.++ .||.+|=|..-.|.. +..++ ++.
T Consensus 137 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (383)
T cd03332 137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE 216 (383)
T ss_pred CCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCC
Confidence 35889998776 5666666666554 599988887444431 11100 000
Q ss_pred ------------cccc---CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC
Q 023070 55 ------------AFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 119 (287)
Q Consensus 55 ------------~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~ 119 (287)
+..+ -++.+.-+-++.+++.++.||.+| |. ...+-++.+.+.|+|+|+|.+....+ .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV---~~~~dA~~a~~~G~d~I~vsnhGGr~--~ 288 (383)
T cd03332 217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GI---LHPDDARRAVEAGVDGVVVSNHGGRQ--V 288 (383)
T ss_pred CcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cC---CCHHHHHHHHHCCCCEEEEcCCCCcC--C
Confidence 0000 123333466778888889999999 22 22355778889999999995322111 1
Q ss_pred CCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 120 KKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+++..+.+.++++.+ ++||++.|||++..|+.++|. .|||+|++||+++
T Consensus 289 d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~l 341 (383)
T cd03332 289 DGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALA-LGAKAVLIGRPYA 341 (383)
T ss_pred CCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHH
Confidence 22345577888888776 599999999999999999998 5999999999998
No 101
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.92 E-value=6.4e-08 Score=82.30 Aligned_cols=141 Identities=18% Similarity=0.290 Sum_probs=108.4
Q ss_pred CCCEEEEecCCC----HHHHHHHHHH-HcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCc
Q 023070 8 DRPLFVQFCAND----PEILLNAARR-VEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVP 78 (287)
Q Consensus 8 ~~p~~~Qi~g~~----~~~~~~aA~~-~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~p 78 (287)
..|+++++..++ .++..+.++. .+.|+|+|.+. ++++. ..+++.+.+.++++.+.+ ++|
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~p 115 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLK------------EGDWEEVLEEIAAVVEAADGGLP 115 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHh------------CCCHHHHHHHHHHHHHHhcCCce
Confidence 578999999988 7777777774 55699999984 32221 115788888888888874 899
Q ss_pred EEEEecCCCC--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHH
Q 023070 79 VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK 154 (287)
Q Consensus 79 v~vKiR~g~~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~ 154 (287)
+.++...+.. .+...++++.+.+.|++.|..+..... +..+++.++++++.. ++||++.||+.+++.+..
T Consensus 116 v~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~ 189 (201)
T cd00945 116 LKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------GGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALA 189 (201)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------CCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHH
Confidence 9999987543 455667777788899999987643221 235788888888876 679999999999999999
Q ss_pred HHHhcCccEEEEe
Q 023070 155 CLEETGCEGVLSA 167 (287)
Q Consensus 155 ~l~~~gad~VmiG 167 (287)
++.. ||+++++|
T Consensus 190 ~~~~-Ga~g~~~g 201 (201)
T cd00945 190 AIEA-GADGIGTS 201 (201)
T ss_pred HHHh-ccceeecC
Confidence 9984 99999875
No 102
>PLN02979 glycolate oxidase
Probab=98.92 E-value=3e-08 Score=91.99 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=106.3
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCccc---------------------------
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNYG--------------------------- 54 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~G--------------------------- 54 (287)
+.|...|+.-. |.+...+-.+.++ +|+.+|=+..-+|.. +.. +.++.
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 34789999754 5555555555554 599998888666663 111 11110
Q ss_pred ccc--cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 55 AFL--MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 55 ~~l--~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
..+ .-++.+.-+-++.+++..+.||.+|- . ...+-|+.+.++|+|+|.|.+.-..+. ...++..+.+.++
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKg---V---~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei 271 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKG---V---LTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEV 271 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeec---C---CCHHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHH
Confidence 000 01233334668888888999999993 1 124567889999999999964432222 2224456777777
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 133 KNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 133 ~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+ ++||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 272 ~~~~~~~~~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 272 VKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred HHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 7765 599999999999999999998 59999999998873
No 103
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.92 E-value=4e-08 Score=92.71 Aligned_cols=135 Identities=20% Similarity=0.194 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
|-.++.+.++..++++|+|.|-|-..- .+.+.+.++++.+++.. +.+|.++. -.+.+-
T Consensus 149 g~~~~~~~~v~~lv~aGvDvI~iD~a~---------------g~~~~~~~~v~~ik~~~p~~~vi~g~------V~T~e~ 207 (404)
T PRK06843 149 SIDIDTIERVEELVKAHVDILVIDSAH---------------GHSTRIIELVKKIKTKYPNLDLIAGN------IVTKEA 207 (404)
T ss_pred eCCHHHHHHHHHHHhcCCCEEEEECCC---------------CCChhHHHHHHHHHhhCCCCcEEEEe------cCCHHH
Confidence 557888888888999999998885421 23567888899998876 67787762 233566
Q ss_pred HHHHHHcCCCEEEEeccCCCC----c-CCCCccccHHHHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 96 AKMLEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~----~-~~~~~~~~~~~i~~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+.++|+|+|.| |.+... + ....+.+++..+.. +.+..++|||+.|||+++.|+.++|. .|||+||+|
T Consensus 208 a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmvG 285 (404)
T PRK06843 208 ALDLISVGADCLKV-GIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMIG 285 (404)
T ss_pred HHHHHHcCCCEEEE-CCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEc
Confidence 78888999999987 332211 0 01112355665544 44456899999999999999999999 699999999
Q ss_pred hhhhhCc
Q 023070 168 ESLLENP 174 (287)
Q Consensus 168 R~~l~nP 174 (287)
+.+..-.
T Consensus 286 s~~agt~ 292 (404)
T PRK06843 286 NLFAGTK 292 (404)
T ss_pred ceeeeee
Confidence 9987633
No 104
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.91 E-value=4.2e-08 Score=92.04 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=72.5
Q ss_pred HHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecC
Q 023070 68 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN 145 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGg 145 (287)
++.+++.++.||.+|= . -..+-++.+.+.|+++|.|.+.-..+... .....+.+.++.+.+ ++||++.||
T Consensus 237 i~~lr~~~~~pvivKg-----V-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~~i~~a~~~~~~vi~dGG 308 (381)
T PRK11197 237 LEWIRDFWDGPMVIKG-----I-LDPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALPAIADAVKGDITILADSG 308 (381)
T ss_pred HHHHHHhCCCCEEEEe-----c-CCHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHHHHHHHhcCCCeEEeeCC
Confidence 7778888899999992 1 23455778889999999995321111111 134456677776655 699999999
Q ss_pred CCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 146 VRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|++..|+.++|. .|||+|++||.++.
T Consensus 309 Ir~g~Di~KALa-LGA~~V~iGr~~l~ 334 (381)
T PRK11197 309 IRNGLDVVRMIA-LGADTVLLGRAFVY 334 (381)
T ss_pred cCcHHHHHHHHH-cCcCceeEhHHHHH
Confidence 999999999998 59999999999873
No 105
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.91 E-value=7.9e-09 Score=91.04 Aligned_cols=89 Identities=22% Similarity=0.358 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.|+++......... ..+++.++++.+.+++||+++|||+|.+++.++++ .|++.|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~~~~---~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASKRGR---EPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcccCC---CCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 378999999999999999999887764322 57899999999999999999999999999999887 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988764
No 106
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.91 E-value=7.2e-08 Score=84.09 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=96.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|++++=++.++. ++....+.|+|+|-+.. .. + .++.+.++++.... .++.+.+-+.
T Consensus 72 ~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~-------------~~-~-~~~~~~~~~~~~~~-~g~~~~v~v~--- 129 (217)
T cd00331 72 SLPVLRKDFIIDPY---QIYEARAAGADAVLLIV-------------AA-L-DDEQLKELYELARE-LGMEVLVEVH--- 129 (217)
T ss_pred CCCEEECCeecCHH---HHHHHHHcCCCEEEEee-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEEC---
Confidence 56777654446664 23334567999988752 11 1 23666777776533 3555444442
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++ ++.+.+.|++++.+|+++.... ..+++.+.++++. .++||++.|||.+++++.++++ .|+|+|+
T Consensus 130 ~~~e----~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~-~Ga~gvi 199 (217)
T cd00331 130 DEEE----LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAE-AGADAVL 199 (217)
T ss_pred CHHH----HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHH-cCCCEEE
Confidence 2222 5667789999999997764321 4667888999887 4699999999999999999998 5999999
Q ss_pred EehhhhhCccchh
Q 023070 166 SAESLLENPALFA 178 (287)
Q Consensus 166 iGR~~l~nP~lf~ 178 (287)
+|++++..++...
T Consensus 200 vGsai~~~~~p~~ 212 (217)
T cd00331 200 IGESLMRAPDPGA 212 (217)
T ss_pred ECHHHcCCCCHHH
Confidence 9999998776443
No 107
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.91 E-value=1.9e-08 Score=94.02 Aligned_cols=153 Identities=24% Similarity=0.295 Sum_probs=101.6
Q ss_pred CCEEEEecC-CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhc----Ccccc---------------------------
Q 023070 9 RPLFVQFCA-NDPEILLNAARRVE-PYCDYVDINLGCPQRIARR----GNYGA--------------------------- 55 (287)
Q Consensus 9 ~p~~~Qi~g-~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~----~~~G~--------------------------- 55 (287)
.|..+||.- .+.+...+..+.++ .|+++|-++.-+|+...|. .++.-
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 678999955 46677666777665 5999988875544421110 11100
Q ss_pred ------------cc---cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEe--ccCCCCcC
Q 023070 56 ------------FL---MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKD 118 (287)
Q Consensus 56 ------------~l---~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh--~rt~~~~~ 118 (287)
.+ .-++.+.-+-++.+++.++.||.||== -..+-++.+.+.|+++|.|. |.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv------~~~~da~~~~~~G~~~i~vs~hGGr~~--- 260 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV------LSPEDAKRAVDAGVDGIDVSNHGGRQL--- 260 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSS---
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec------ccHHHHHHHHhcCCCEEEecCCCcccC---
Confidence 00 013444456688888999999999932 22345788899999999995 44432
Q ss_pred CCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 119 GKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 119 ~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+++-.+.+.++++.+ ++||++.|||++..|+.+++. .|||+|.+||+++.
T Consensus 261 -d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 261 -DWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp -TTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred -ccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 22355667788888765 599999999999999999999 59999999998863
No 108
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.91 E-value=5.2e-09 Score=90.13 Aligned_cols=90 Identities=21% Similarity=0.364 Sum_probs=79.9
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+++++|++..+.|+|.++.-..|.+.... ...+++++++.+.+.+|+.+.|||+|.+|+.++|. .|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~gr---~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEGR---ETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEecccccccc---hhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeC
Confidence 45588999999999999999998777654222 47789999999999999999999999999999998 599999999
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
++++.||.|.+++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999998775
No 109
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.91 E-value=4.9e-08 Score=95.16 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=102.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.+.++-=-.|-.++.+.++..++++|+|.|-|.. +. .+...+.+.++.+++.. +.+|.++
T Consensus 235 ~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~--~~-------------g~~~~~~~~i~~ik~~~p~~~vi~g---- 295 (505)
T PLN02274 235 GKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDS--SQ-------------GDSIYQLEMIKYIKKTYPELDVIGG---- 295 (505)
T ss_pred CCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeC--CC-------------CCcHHHHHHHHHHHHhCCCCcEEEe----
Confidence 3434433356678889999999999999988864 21 24456678889998876 6788776
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEe--cc----CCCCc-CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh--~r----t~~~~-~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+ -.+.+-++.+.++|+|.|.|. +. |+... .+.+....+..+.++.+..++|||+.|||+++.|+.++|. .
T Consensus 296 -~-v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla-~ 372 (505)
T PLN02274 296 -N-VVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALT-L 372 (505)
T ss_pred -c-CCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-c
Confidence 2 123455788889999999773 22 21100 1112223556677888778999999999999999999999 5
Q ss_pred CccEEEEehhhhh
Q 023070 160 GCEGVLSAESLLE 172 (287)
Q Consensus 160 gad~VmiGR~~l~ 172 (287)
|||+||+|+.+..
T Consensus 373 GA~~V~vGs~~~~ 385 (505)
T PLN02274 373 GASTVMMGSFLAG 385 (505)
T ss_pred CCCEEEEchhhcc
Confidence 9999999998864
No 110
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.90 E-value=3.9e-08 Score=91.78 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=105.5
Q ss_pred CCCEEEEecCC-CHHHHHHHHHHHc-CCCCEEEEeccCChh-hhh---cCccc--------c---------------cc-
Q 023070 8 DRPLFVQFCAN-DPEILLNAARRVE-PYCDYVDINLGCPQR-IAR---RGNYG--------A---------------FL- 57 (287)
Q Consensus 8 ~~p~~~Qi~g~-~~~~~~~aA~~~~-~g~d~IdiN~gcP~~-~~~---~~~~G--------~---------------~l- 57 (287)
+.|...|+.-. |.+...+..+.++ +||.+|=|..-+|.. +.. +.++- . .+
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 200 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence 35789999864 5555555555554 599998887666653 111 11110 0 00
Q ss_pred -----cCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 58 -----MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 58 -----~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.-++.+.-+-++.+++..+.||.+|= . ...+-++.+.++|++.|.|.+.-..+. ...++..+.+.++
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKg---V---~~~~dA~~a~~~Gvd~I~VsnhGGrql--d~~~~t~~~L~ei 272 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKG---V---LTGEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEV 272 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEeec---C---CCHHHHHHHHHcCCCEEEECCCCCCCC--CCchhHHHHHHHH
Confidence 01222333557788888899999992 1 134667889999999999964432222 2224456777778
Q ss_pred HhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 133 KNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 133 ~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++.+ ++||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 273 ~~av~~~~~vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 273 VKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred HHHhCCCCeEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 7765 599999999999999999998 59999999998874
No 111
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.88 E-value=6.3e-08 Score=94.31 Aligned_cols=142 Identities=23% Similarity=0.222 Sum_probs=97.9
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+.++-=..|..++.+.++..++++|+|.|.|+.. . .+.....+.++.+++.. +++|.++
T Consensus 229 rL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a--------~-------G~s~~~~~~i~~ik~~~~~~~v~aG----- 288 (495)
T PTZ00314 229 QLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS--------Q-------GNSIYQIDMIKKLKSNYPHVDIIAG----- 288 (495)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC--------C-------CCchHHHHHHHHHHhhCCCceEEEC-----
Confidence 4344345567788888888889999999999963 1 13444567888888775 6777774
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe--cc-CCCCc-CCCCccccHHHHHHHH---hhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVK---NALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh--~r-t~~~~-~~~~~~~~~~~i~~i~---~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+ -.+.+-++.+.++|+|+|.|. +. +.... ....+.+++..+..+. +..++|||+.|||+++.|+.+++. .|
T Consensus 289 ~-V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla-~G 366 (495)
T PTZ00314 289 N-VVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALA-LG 366 (495)
T ss_pred C-cCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH-cC
Confidence 1 122455777889999999872 11 11110 1112234555544444 445899999999999999999998 69
Q ss_pred ccEEEEehhhhh
Q 023070 161 CEGVLSAESLLE 172 (287)
Q Consensus 161 ad~VmiGR~~l~ 172 (287)
||+||+|+.+..
T Consensus 367 A~~Vm~G~~~a~ 378 (495)
T PTZ00314 367 ADCVMLGSLLAG 378 (495)
T ss_pred CCEEEECchhcc
Confidence 999999998654
No 112
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.85 E-value=1e-07 Score=83.51 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=94.8
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
.+.++..+.|++..+ +-|.|.|-. +.| -.|+.|+....+-.+.+.+. ++-+.--+ .+...
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc------~dd~~ 135 (248)
T cd04728 73 RTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYC------TDDPV 135 (248)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEe------CCCHH
Confidence 578888888887654 457776652 222 24666666655555554321 22222111 12346
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++++.|++.|..+|...... .+..+.+.|+.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 136 ~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~ 209 (248)
T cd04728 136 LAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAK 209 (248)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcC
Confidence 79999999999996665554422 2356789999999988999999999999999999999 69999999999873
No 113
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=98.85 E-value=2.6e-07 Score=83.04 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=109.3
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+...+++.+.+.++ ..+.||..+.+++| .+++.-.++++++++.+ ++++.+..
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa 136 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDA 136 (265)
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3457777777778888887776 56679999999875 13466678888888876 57888888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+++|.- ... +.+++..+++++.+++||.+.+.+.++.++.++++...+|.
T Consensus 137 n~~~~~~~a~~~~~~l~~~~i~~iEe-------P~~---~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~ 206 (265)
T cd03315 137 NRGWTPKQAIRALRALEDLGLDYVEQ-------PLP---ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADA 206 (265)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEC-------CCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCE
Confidence 88899999999999999999988832 111 35788899999999999999999999999999998888999
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 207 v~~ 209 (265)
T cd03315 207 VNI 209 (265)
T ss_pred EEE
Confidence 987
No 114
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.85 E-value=1.2e-07 Score=91.57 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=100.9
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCCCChhhHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~ 93 (287)
-.+-.++.+.++..+++.|+|.|.|+..- | +...+.+.++.+++. .++||.++- -.+.
T Consensus 218 av~~~~~~~~r~~~L~~aG~d~I~vd~a~----------g-----~~~~~~~~i~~i~~~~~~~~vi~G~------v~t~ 276 (450)
T TIGR01302 218 AVGTREFDKERAEALVKAGVDVIVIDSSH----------G-----HSIYVIDSIKEIKKTYPDLDIIAGN------VATA 276 (450)
T ss_pred EecCchhHHHHHHHHHHhCCCEEEEECCC----------C-----cHhHHHHHHHHHHHhCCCCCEEEEe------CCCH
Confidence 34556788999998999999999998531 1 234677888888887 489999862 1234
Q ss_pred HHHHHHHHcCCCEEEEe--cc-CCCCc-CCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVH--GR-TRDEK-DGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh--~r-t~~~~-~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+-++.+.++|+|+|.|. +. +...+ ....+.+.+..+.++.+ ..++|||+.|||+++.|+.++|. .|||.||+
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla-~GA~~V~~ 355 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALA-AGADAVML 355 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 55777889999999764 21 11111 11122345566665544 35899999999999999999999 59999999
Q ss_pred ehhhhhCccchh
Q 023070 167 AESLLENPALFA 178 (287)
Q Consensus 167 GR~~l~nP~lf~ 178 (287)
|+.+..-.+-..
T Consensus 356 G~~~a~~~e~pg 367 (450)
T TIGR01302 356 GSLLAGTTESPG 367 (450)
T ss_pred CchhhcCCcCCC
Confidence 998766555443
No 115
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.82 E-value=2.3e-08 Score=88.01 Aligned_cols=89 Identities=27% Similarity=0.421 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.++++....... + ...+++.++++++.+++||++.|||+|.+|+.++++ .|||.|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 4788999999999999999987643211 1 147899999999999999999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999998887654
No 116
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.82 E-value=6.6e-08 Score=91.66 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhccC-CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC------CCCccccHHHHHHH
Q 023070 60 NLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKAV 132 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~-~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~------~~~~~~~~~~i~~i 132 (287)
+++.+.++++.+++..+ +||.+|.-.+. ...++++.++..|+|+|+|.|....+.. ...+.+....+..+
T Consensus 197 ~~~~l~~~I~~lr~~~~~~pV~vK~~~~~---~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 197 SIEDLAQLIEDLREATGGKPIGVKLVAGH---GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEECCCC---CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 45668999999999887 99999986643 3346777788888999999765322110 01112222334444
Q ss_pred Hhh-------CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 133 KNA-------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 133 ~~~-------~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+. .++||+++|||+|..|+.+++. .|||+|.+||+++.--
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kala-LGAd~V~ig~~~l~al 321 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALA-LGADAVGIGTAALIAL 321 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH-cCCCeeeechHHHHhc
Confidence 332 2699999999999999999999 5999999999998543
No 117
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=98.81 E-value=1.5e-07 Score=87.99 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=113.2
Q ss_pred CCCCEEEEecCC--CHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEE
Q 023070 7 EDRPLFVQFCAN--DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~v 81 (287)
...|+...+.+. +++++.++++. .+.||+.|.|+.|.+.. +.++++...++++++++.+ ++++.+
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 345666666555 59999888874 56799999999874321 1167888899999999887 578999
Q ss_pred EecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 82 KiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
..+-+|+.++++++++.+++.|+.+|- +.. . +.+++..+.+++.+++||++.+.+.+++++.++++...+
T Consensus 195 DaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP~-~--~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~ 264 (357)
T cd03316 195 DANGRWDLAEAIRLARALEEYDLFWFE-------EPV-P--PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAV 264 (357)
T ss_pred ECCCCCCHHHHHHHHHHhCccCCCeEc-------CCC-C--ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCC
Confidence 988899999999999999998887763 111 1 247888999999999999999999999999999998789
Q ss_pred cEEEEe
Q 023070 162 EGVLSA 167 (287)
Q Consensus 162 d~VmiG 167 (287)
|.|.+-
T Consensus 265 d~v~~k 270 (357)
T cd03316 265 DIIQPD 270 (357)
T ss_pred CEEecC
Confidence 998773
No 118
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.75 E-value=5e-08 Score=86.35 Aligned_cols=89 Identities=27% Similarity=0.404 Sum_probs=75.0
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++++.+.+.|++.+++-..+.... . ...+++.++++.+..++|++++|||+|.++++.+++ .|||.|++|+.
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~-~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~-~Ga~~v~iGs~ 107 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFE-G--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLD-LGVDRVILGTA 107 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhc-C--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 4788999999999999986654432211 1 146789999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|+++.++..
T Consensus 108 ~~~~~~~~~~i~~ 120 (241)
T PRK13585 108 AVENPEIVRELSE 120 (241)
T ss_pred HhhChHHHHHHHH
Confidence 9999999988764
No 119
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.74 E-value=6e-07 Score=77.39 Aligned_cols=80 Identities=18% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+.++.+.+.|+|++.++...............|+.++++++.+++||++.||| +++++.++++ .|+|+|++|++++..
T Consensus 106 e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 106 EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcC
Confidence 34667889999999765333222111112357899999998889999999999 8999999998 699999999999854
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
++
T Consensus 184 ~~ 185 (201)
T PRK07695 184 AN 185 (201)
T ss_pred CC
Confidence 33
No 120
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.74 E-value=2.9e-07 Score=82.38 Aligned_cols=158 Identities=17% Similarity=0.221 Sum_probs=101.9
Q ss_pred CEEEEecCC--CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cCCc
Q 023070 10 PLFVQFCAN--DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~~p 78 (287)
-++.=|... |.+...++++. .+.|+|.|||- |.-|. +..++- +--+|. -+.+.+.++++++++. .++|
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a-~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAA-DLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 466555544 66778888874 56799999997 34444 112111 111111 2567788999999876 6788
Q ss_pred EEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEecc--------------------------CC-----------C---
Q 023070 79 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR--------------------------TR-----------D--- 115 (287)
Q Consensus 79 v~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~-----------~--- 115 (287)
+..= ...+. -...++++.+.++|++.+++|.- |. .
T Consensus 90 lv~m--~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfi 167 (256)
T TIGR00262 90 IGLL--TYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFV 167 (256)
T ss_pred EEEE--EeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCE
Confidence 6421 11111 12245677777777777777531 10 0
Q ss_pred ---CcCCCCc------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 116 ---EKDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 116 ---~~~~~~~------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
...+.+| +...+.++++++.++.||++.|||+|++++.++.+ .|||+|.+|++++
T Consensus 168 y~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~-~GADgvVvGSaiv 231 (256)
T TIGR00262 168 YLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAID-AGADGVIVGSAIV 231 (256)
T ss_pred EEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHH
Confidence 0011122 12367888999888999999999999999999888 5999999999985
No 121
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.74 E-value=1.8e-07 Score=82.36 Aligned_cols=132 Identities=20% Similarity=0.168 Sum_probs=92.7
Q ss_pred EEecC--CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC----
Q 023070 13 VQFCA--NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF---- 86 (287)
Q Consensus 13 ~Qi~g--~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g---- 86 (287)
+|+.| ++.+++.+ +.+.|++.+-+ |++.. +|+++.++.+... ++-+++..|-|
T Consensus 76 v~~gGGIrs~edv~~---l~~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~ 134 (228)
T PRK04128 76 VQVGGGLRTYESIKD---AYEIGVENVII--------------GTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAV 134 (228)
T ss_pred EEEcCCCCCHHHHHH---HHHCCCCEEEE--------------Cchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEec
Confidence 45544 34454443 34457777755 35555 8999999988773 25566665543
Q ss_pred --CC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 87 --PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 87 --~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
|. .....++++.+++. +..|.++...++++..+ +| +..+. ..++|||++|||+|.+|+.++.+ .|+
T Consensus 135 ~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G---~d-~l~~~---~~~~pviasGGv~~~~Dl~~l~~-~g~ 205 (228)
T PRK04128 135 KGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGTLTG---IE-EIERF---WGDEEFIYAGGVSSAEDVKKLAE-IGF 205 (228)
T ss_pred CCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhcccC---HH-HHHHh---cCCCCEEEECCCCCHHHHHHHHH-CCC
Confidence 32 23567888889888 99999998888876543 33 22221 25899999999999999999987 699
Q ss_pred cEEEEehhhhhCc
Q 023070 162 EGVLSAESLLENP 174 (287)
Q Consensus 162 d~VmiGR~~l~nP 174 (287)
++|.+|++++..-
T Consensus 206 ~gvivg~al~~g~ 218 (228)
T PRK04128 206 SGVIIGKALYEGR 218 (228)
T ss_pred CEEEEEhhhhcCC
Confidence 9999999997653
No 122
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.73 E-value=5.1e-07 Score=79.27 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
.+.++..+.|++..+ +-+.|.|-. +-| -.++.|+....+-.+.+.+. ++-|.--+ .+...
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~llpd~~~tv~aa~~L~~~-Gf~vlpyc------~~d~~ 135 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFVVLPYC------TDDPV 135 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCC----------CCCCcCHHHHHHHHHHHHHC-CCEEEEEe------CCCHH
Confidence 578888888887654 457766652 222 23455555555544444221 22222111 12356
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.++++++.|++.|-.+|...... .+..+.+.++.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 136 ~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItk 209 (250)
T PRK00208 136 LAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhC
Confidence 79999999999996655544322 2345788899999988999999999999999999999 69999999999874
No 123
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.71 E-value=4.8e-07 Score=81.22 Aligned_cols=159 Identities=16% Similarity=0.203 Sum_probs=102.6
Q ss_pred CEEEEecCC--CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcE
Q 023070 10 PLFVQFCAN--DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPV 79 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv 79 (287)
-++.=|... +.+...+.++ +.+.|+|.|||- |.-|. +..++- +--+|. -+.+.+.++++++++..++|+
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~rAL~~g~~~~~~~~~~~~~r~~~~~p~ 94 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEA-SNRALKQGINLNKILSILSEVNGEIKAPI 94 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhcCCCCCE
Confidence 466555554 5677888777 456799999997 45555 122211 112222 256778899999987778886
Q ss_pred EEEecCCCCh--h-hHHHHHHHHHHcCCCEEEEecc--------------------------CCC----------C----
Q 023070 80 SCKIRVFPNL--Q-DTIKYAKMLEDAGCSLLAVHGR--------------------------TRD----------E---- 116 (287)
Q Consensus 80 ~vKiR~g~~~--~-~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~----------~---- 116 (287)
. +-..++. . ...+|++.+.++|++.+++|.- |.. .
T Consensus 95 v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY 172 (263)
T CHL00200 95 V--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIY 172 (263)
T ss_pred E--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEE
Confidence 4 2222221 1 2345677777777777777531 100 0
Q ss_pred ---cCCCCcc-----cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 117 ---KDGKKFR-----AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 117 ---~~~~~~~-----~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+.+|. .+ -+.++++++.++.||...+||++++++.++.+ .|||||.+|.+++.
T Consensus 173 ~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~-~GADGvVVGSalv~ 236 (263)
T CHL00200 173 LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKG-WNINGIVIGSACVQ 236 (263)
T ss_pred EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 0111111 11 25677888888999999999999999999887 59999999999964
No 124
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.71 E-value=8.3e-08 Score=85.21 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.++|+.+.+.|++.|++-.-.... + ...+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+.|.+|.++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchH
Confidence 78899999999999999997655432 1 247889999999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+.||.++.++..
T Consensus 108 l~~p~l~~~i~~ 119 (241)
T PRK14024 108 LENPEWCARVIA 119 (241)
T ss_pred hCCHHHHHHHHH
Confidence 999999988754
No 125
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.70 E-value=6.8e-07 Score=82.98 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+.++.+.+.|+|.|++.|....+..+.....-+.++.++++.+++|||+.|||.|.+++..+|. .|||||++|+.++.
T Consensus 146 ~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 146 VREARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESHHHHT
T ss_pred HHHHHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCCeEEe
Confidence 45678889999999999877554332211112467888999999999999999999999999998 69999999999987
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
-+.
T Consensus 225 t~E 227 (330)
T PF03060_consen 225 TEE 227 (330)
T ss_dssp STT
T ss_pred ccc
Confidence 655
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.69 E-value=4.6e-07 Score=80.49 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCccccccc----------CChHHHHHHHHHHhhccCCcEEE--EecC
Q 023070 19 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLM----------DNLPLVKSLVEKLALNLNVPVSC--KIRV 85 (287)
Q Consensus 19 ~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~----------~~~~~~~~iv~~v~~~~~~pv~v--KiR~ 85 (287)
+.+.+.+.++.++ .|+|.|+|++ |.+.-.-| |-... -+.+...++++.+++..++|+.+ +...
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~D--G~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGI--PFSDPVAD--GPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 5578899888655 5899999995 44222222 11111 13457889999999877888654 5332
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEec--------------------------cCCC-----------C------cCCCCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------RTRD-----------E------KDGKKF 122 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~--------------------------rt~~-----------~------~~~~~~ 122 (287)
-.. .....+++.+.++|++.++++. -|.. + ..+..|
T Consensus 88 ~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG 166 (242)
T cd04724 88 ILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTG 166 (242)
T ss_pred HHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCC
Confidence 110 0124566667777777777621 0100 0 001111
Q ss_pred ------cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 ------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ------~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
....+.++++++..++||++.|||++.+++.++.+ . ||+|.+|++++
T Consensus 167 ~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~-~-ADgvVvGSaiv 219 (242)
T cd04724 167 ARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAK-Y-ADGVIVGSALV 219 (242)
T ss_pred CccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHc-c-CCEEEECHHHH
Confidence 11246788888888999999999999999999887 4 99999998876
No 127
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.69 E-value=1.1e-07 Score=85.27 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+.+.|++.|++..-.+..... ..+++.++++.+.+++||++.|||+|.+|+.+++. .|++.|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~---~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKRGS---EPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCC---cccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChH
Confidence 478999999999999999998766553322 47899999999999999999999999999999997 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988754
No 128
>PLN02591 tryptophan synthase
Probab=98.68 E-value=8.3e-07 Score=79.05 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=94.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhccCCcEEEEecCCCCh-
Q 023070 19 DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALNLNVPVSCKIRVFPNL- 89 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~- 89 (287)
|.+...+.++ +.+.|+|.|||- |.-|. +..++. .--+|. -+.+.+.++++.+++..++|+.+= ..++.
T Consensus 14 ~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm--~Y~N~i 90 (250)
T PLN02591 14 DLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAA-ATRALEKGTTLDSVISMLKEVAPQLSCPIVLF--TYYNPI 90 (250)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE--ecccHH
Confidence 6778888888 456799999997 44554 122211 111222 256778899999987778886422 21111
Q ss_pred -h-hHHHHHHHHHHcCCCEEEE-------------------------e-ccCCCC-----------------cCCCCc--
Q 023070 90 -Q-DTIKYAKMLEDAGCSLLAV-------------------------H-GRTRDE-----------------KDGKKF-- 122 (287)
Q Consensus 90 -~-~~~~~a~~l~~~G~~~I~v-------------------------h-~rt~~~-----------------~~~~~~-- 122 (287)
. ...+|++.+.++|++.+.+ - +-|... ..+-+|
T Consensus 91 ~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~ 170 (250)
T PLN02591 91 LKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR 170 (250)
T ss_pred HHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC
Confidence 0 2234555555555555555 1 111110 011111
Q ss_pred ---cccH-HHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 ---RADW-NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ---~~~~-~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+. +.++.+++.+++||+..-||++++++.++++ .|||||.+|++++
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~-~GADGvIVGSalV 222 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAG-WGADGVIVGSAMV 222 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHh-cCCCEEEECHHHH
Confidence 2233 4588899888999999999999999999887 5999999999987
No 129
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.68 E-value=9.5e-08 Score=84.12 Aligned_cols=86 Identities=15% Similarity=0.261 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.++++.+.+. ++.+++-.+..... + .+.+++.++++.+.+++||++.|||+|.+|++++++ .|+|+|.+|+++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~-g--~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFE-G--KPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhc-C--CcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchh
Confidence 788999999998 99998865543211 1 147899999999999999999999999999999998 599999999999
Q ss_pred hhCccchhchhh
Q 023070 171 LENPALFAGFRT 182 (287)
Q Consensus 171 l~nP~lf~~~~~ 182 (287)
+ ||.+++++..
T Consensus 106 ~-~~~~l~~~~~ 116 (228)
T PRK04128 106 F-DLEFLEKVTS 116 (228)
T ss_pred c-CHHHHHHHHH
Confidence 9 9999988753
No 130
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.67 E-value=1.2e-07 Score=83.88 Aligned_cols=89 Identities=6% Similarity=0.138 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++.+.|+.+.+ .|++.++|-.-...... .+.+++.|+++.+.+++||.+.|||+|.+++++++. .||+-|.+|+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~---~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~-~Ga~kvvigt 106 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQ---HAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFA-AGINYCIVGT 106 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccC---CcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHH-CCCCEEEECc
Confidence 367789999999 79999999755443211 147899999999999999999999999999999998 6999999999
Q ss_pred hhhhCccchhchhh
Q 023070 169 SLLENPALFAGFRT 182 (287)
Q Consensus 169 ~~l~nP~lf~~~~~ 182 (287)
.++.||.+++++..
T Consensus 107 ~a~~~~~~l~~~~~ 120 (234)
T PRK13587 107 KGIQDTDWLKEMAH 120 (234)
T ss_pred hHhcCHHHHHHHHH
Confidence 99999999998864
No 131
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.67 E-value=6.3e-07 Score=87.39 Aligned_cols=140 Identities=20% Similarity=0.178 Sum_probs=96.5
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
.+-...+-+|+.+..+..+++.|+|.|-++. +. .+...+.+.++.+++.. +.||.++-
T Consensus 218 ~V~aai~~~~~~~e~a~~L~~agvdvivvD~--a~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~------ 276 (486)
T PRK05567 218 RVGAAVGVGADNEERAEALVEAGVDVLVVDT--AH-------------GHSEGVLDRVREIKAKYPDVQIIAGN------ 276 (486)
T ss_pred EEEeecccCcchHHHHHHHHHhCCCEEEEEC--CC-------------CcchhHHHHHHHHHhhCCCCCEEEec------
Confidence 4445556566777777678888999875542 11 12345677888888876 88998862
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCC---Cc-CCCCccccHHHHHHHHhh---CCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRD---EK-DGKKFRADWNAIKAVKNA---LRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~---~~-~~~~~~~~~~~i~~i~~~---~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
-.+.+-++.+.++|+++|.|-..... .+ ....+.+++..+.++++. .++|||+.|||+++.|+.++|. .|||
T Consensus 277 v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla-~GA~ 355 (486)
T PRK05567 277 VATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALA-AGAS 355 (486)
T ss_pred cCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHH-hCCC
Confidence 22344567788999999987321100 00 112234677778777664 4799999999999999999999 5999
Q ss_pred EEEEehhhhh
Q 023070 163 GVLSAESLLE 172 (287)
Q Consensus 163 ~VmiGR~~l~ 172 (287)
.||+|+.+-.
T Consensus 356 ~v~~G~~~a~ 365 (486)
T PRK05567 356 AVMLGSMLAG 365 (486)
T ss_pred EEEECccccc
Confidence 9999987643
No 132
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.66 E-value=3.7e-07 Score=88.38 Aligned_cols=140 Identities=17% Similarity=0.120 Sum_probs=98.0
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+..+-.+.|-.++....+..++++|+|.|-|-... .+++.+.++++.+++.. ++||.+.
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~---------------g~~~~~~~~i~~i~~~~~~~~vi~g----- 272 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAH---------------GHQVKMISAIKAVRALDLGVPIVAG----- 272 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCC---------------CCcHHHHHHHHHHHHHCCCCeEEEe-----
Confidence 44556666666777777778888999987775321 25688999999999865 7999884
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC--Cc--CCCCccc----cHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD--EK--DGKKFRA----DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~--~~--~~~~~~~----~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
.--+.+-++.+.++|+++|.|.++... .. ...-+.+ .++..+.+++ .++|||+.|||+++.|+.++|. .
T Consensus 273 -~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~-~~~~viadGgi~~~~di~kala-~ 349 (475)
T TIGR01303 273 -NVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARK-LGGHVWADGGVRHPRDVALALA-A 349 (475)
T ss_pred -ccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHH-cCCcEEEeCCCCCHHHHHHHHH-c
Confidence 122345577788999999987433111 11 1111223 3333333343 3899999999999999999999 6
Q ss_pred CccEEEEehhhh
Q 023070 160 GCEGVLSAESLL 171 (287)
Q Consensus 160 gad~VmiGR~~l 171 (287)
|||+||+|+.+-
T Consensus 350 GA~~vm~g~~~a 361 (475)
T TIGR01303 350 GASNVMVGSWFA 361 (475)
T ss_pred CCCEEeechhhc
Confidence 999999998764
No 133
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.66 E-value=2.2e-07 Score=80.24 Aligned_cols=118 Identities=25% Similarity=0.477 Sum_probs=82.7
Q ss_pred CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE----ec-------
Q 023070 43 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----HG------- 111 (287)
Q Consensus 43 cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v----h~------- 111 (287)
-|......+ |-+-|.||..+.+|++++ .+||..|.|+|.-.+ |+.|+..|+|+|.= ++
T Consensus 50 vPaDiR~aG--GVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~~E-----A~iLealgVD~IDESEVLTPAD~~~Hi 118 (296)
T COG0214 50 VPADIRAAG--GVARMADPKMIEEIMDAV----SIPVMAKVRIGHFVE-----AQILEALGVDMIDESEVLTPADEEFHI 118 (296)
T ss_pred CcHHHHhcc--CccccCCHHHHHHHHHhc----ccceeeeeecchhHH-----HHHHHHhCCCccccccccCCCchhhhc
Confidence 566544444 788899999999998874 699999999986422 67788889988832 11
Q ss_pred ------------------------------cCCCCcCCC--------------------------------CccccHHHH
Q 023070 112 ------------------------------RTRDEKDGK--------------------------------KFRADWNAI 129 (287)
Q Consensus 112 ------------------------------rt~~~~~~~--------------------------------~~~~~~~~i 129 (287)
||..+...+ ...+.++.+
T Consensus 119 ~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv 198 (296)
T COG0214 119 NKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELV 198 (296)
T ss_pred chhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHH
Confidence 111110000 001224556
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 130 KAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 130 ~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+++++.-++||+ +.|||-||.|+.-+++ .|||||.+|+|++.
T Consensus 199 ~~~~~~grLPVvnFAAGGvATPADAALMM~-LGadGVFVGSGIFK 242 (296)
T COG0214 199 KEVAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHhCCCCeEeecccCcCChhHHHHHHH-hCCCeEEecccccC
Confidence 666666578875 8999999999998887 69999999999864
No 134
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=98.66 E-value=1.8e-06 Score=74.65 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
...++...+..|++.|.+-.-+ +...+.+.+.++++++.+++|++..|||+|+++++++++ .|||+|.+|
T Consensus 136 ~~~~a~aa~~~G~~~i~Le~~s-----Ga~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~-~GAD~VVVG 205 (205)
T TIGR01769 136 AAAYCLAAKYFGMKWVYLEAGS-----GASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVL-AGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHH-cCCCEEEeC
Confidence 3344444445555555442211 111135689999999999999999999999999999987 489999987
No 135
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.65 E-value=6.2e-07 Score=77.38 Aligned_cols=147 Identities=16% Similarity=0.265 Sum_probs=93.3
Q ss_pred EEEecCCCHHHHHHHHHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC
Q 023070 12 FVQFCANDPEILLNAARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP 87 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~ 87 (287)
.++|...|++.+.+.++.+. .|+|.|++- +-+|.- .+.....++++++++..+.|+. ++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 46778889999999999665 589999996 222321 1222345566666655556643 4432
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC---------------------C--c--------------------CCCCc-c
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------------E--K--------------------DGKKF-R 123 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~---------------------~--~--------------------~~~~~-~ 123 (287)
+..++++.+.++|++.|++|+.... . . .+.++ .
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~ 143 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQK 143 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccc
Confidence 2345677777888888888763110 0 0 00111 1
Q ss_pred ccHH---HHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 124 ADWN---AIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 124 ~~~~---~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
.+|. .++++++.+ ++||.+.|||+ ++.+.++++ +|+|++.+|++++..++...
T Consensus 144 ~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsai~~~~d~~~ 204 (210)
T TIGR01163 144 FIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSAIFGADDYKE 204 (210)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChHHhCCCCHHH
Confidence 2333 344454433 37999999995 799999887 69999999999998776443
No 136
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.65 E-value=1e-06 Score=80.70 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=97.9
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
-+.+.+ |-.++++.++..++++ +.|.|-|... . .+.+.+.+.++.+++...-+..+|=+
T Consensus 97 ~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~A--------h-------Ghs~~~i~~ik~ir~~~p~~~viaGN--- 157 (343)
T TIGR01305 97 NVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVA--------N-------GYSEHFVEFVKLVREAFPEHTIMAGN--- 157 (343)
T ss_pred eEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECC--------C-------CcHHHHHHHHHHHHhhCCCCeEEEec---
Confidence 355654 6788999999998887 4888777631 1 25677889999999887444555511
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe------ccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh------~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~ 158 (287)
--+.+-++.+.++|+|.|.|. ..|+.. ..-+.+.+..+..+++.. ++|||+-|||++.-|+.++|.
T Consensus 158 --V~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~--~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA- 232 (343)
T TIGR01305 158 --VVTGEMVEELILSGADIVKVGIGPGSVCTTRTK--TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFG- 232 (343)
T ss_pred --ccCHHHHHHHHHcCCCEEEEcccCCCcccCcee--CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHH-
Confidence 123455778889999999875 122221 122235677777776653 689999999999999999998
Q ss_pred cCccEEEEehhhh
Q 023070 159 TGCEGVLSAESLL 171 (287)
Q Consensus 159 ~gad~VmiGR~~l 171 (287)
.|||+||+|.-+.
T Consensus 233 ~GAd~VMlG~llA 245 (343)
T TIGR01305 233 AGADFVMLGGMFA 245 (343)
T ss_pred cCCCEEEECHhhh
Confidence 6999999994443
No 137
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.63 E-value=4.7e-07 Score=84.82 Aligned_cols=138 Identities=19% Similarity=0.150 Sum_probs=83.2
Q ss_pred HHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHH
Q 023070 20 PEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 20 ~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
|....+.++. +++|+|.|-++-- .+...|.+. -.+|..+.++++. .++||.+.- ..+ .+.++.
T Consensus 141 ~~~~~e~a~~l~eAGad~I~ihgr-----t~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~G~--V~t----~e~A~~ 204 (369)
T TIGR01304 141 PQNAREIAPIVVKAGADLLVIQGT-----LVSAEHVST-SGEPLNLKEFIGE----LDVPVIAGG--VND----YTTALH 204 (369)
T ss_pred CcCHHHHHHHHHHCCCCEEEEecc-----chhhhccCC-CCCHHHHHHHHHH----CCCCEEEeC--CCC----HHHHHH
Confidence 4455555553 5679999999821 122223111 1256666665554 478998731 112 334555
Q ss_pred HHHcCCCEEEEeccCCC--Cc-CCCCccccHHHHHHHHh-------hC---CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 99 LEDAGCSLLAVHGRTRD--EK-DGKKFRADWNAIKAVKN-------AL---RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~--~~-~~~~~~~~~~~i~~i~~-------~~---~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++|+|.|.+ |+... .. ....+.+....+..+.. .. .+|||+.|||.+..|+.++|. .|||+||
T Consensus 205 ~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlA-lGAdaV~ 282 (369)
T TIGR01304 205 LMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIA-CGADAVV 282 (369)
T ss_pred HHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH-cCCCEee
Confidence 66799999984 22111 10 11111233334444332 22 399999999999999999998 6999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+|+++..--+
T Consensus 283 iGt~~a~a~E 292 (369)
T TIGR01304 283 LGSPLARAAE 292 (369)
T ss_pred eHHHHHhhhc
Confidence 9999976444
No 138
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.61 E-value=1.3e-06 Score=76.39 Aligned_cols=124 Identities=17% Similarity=0.269 Sum_probs=89.3
Q ss_pred HHHHHcCCCCEEEE--eccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe---cCCCChhhHHHHHHHHH
Q 023070 26 AARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKMLE 100 (287)
Q Consensus 26 aA~~~~~g~d~Idi--N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi---R~g~~~~~~~~~a~~l~ 100 (287)
+...++.|+|.||+ |.++|. ..+.+.+.+-+.++++.+ .|+.+|+ -...+.++....++.+.
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~ 146 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAK 146 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHH
Confidence 33466789999886 444333 345777888888887755 4677787 33345667788899999
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
++|+|+|--.... . ++.+..+.++.+++.+ +++|.++|||+|++++.++++ .||+.+...++
T Consensus 147 ~agadfIKTsTG~-~-----~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~-aGA~riGtS~~ 210 (221)
T PRK00507 147 EAGADFVKTSTGF-S-----TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIE-AGATRLGTSAG 210 (221)
T ss_pred HhCCCEEEcCCCC-C-----CCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHH-cCcceEccCcH
Confidence 9999977443221 1 1246677777777765 499999999999999999998 59998876654
No 139
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.60 E-value=1.1e-06 Score=85.80 Aligned_cols=130 Identities=17% Similarity=0.165 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE 100 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~ 100 (287)
+.+.++..++++|+|.|.|- +.. ...+.+.+.++.+++....++.|+-..- .+.+-++.+.
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li 302 (502)
T PRK07107 242 DYAERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLA 302 (502)
T ss_pred hHHHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHH
Confidence 45666777888999999985 111 1334557888888887654455553221 2234566777
Q ss_pred HcCCCEEEE--ecc----CCCCcCCCCccccHHHHHHHHhhC-------C--CcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 101 DAGCSLLAV--HGR----TRDEKDGKKFRADWNAIKAVKNAL-------R--IPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 101 ~~G~~~I~v--h~r----t~~~~~~~~~~~~~~~i~~i~~~~-------~--ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
++|+|+|.| |+. |+.+ ...+.+.+..+.++.++. + +|||+.|||++..|+.++|. .|||+||
T Consensus 303 ~aGAd~I~vg~g~Gs~c~tr~~--~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla-~GA~~vm 379 (502)
T PRK07107 303 EAGADFVKVGIGGGSICITREQ--KGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALA-MGADFIM 379 (502)
T ss_pred HcCCCEEEECCCCCcCcccccc--cCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHH-cCCCeee
Confidence 899999988 333 2222 223356677777666643 3 89999999999999999998 6999999
Q ss_pred Eehhhhh
Q 023070 166 SAESLLE 172 (287)
Q Consensus 166 iGR~~l~ 172 (287)
+||.+-+
T Consensus 380 ~G~~~ag 386 (502)
T PRK07107 380 LGRYFAR 386 (502)
T ss_pred eChhhhc
Confidence 9998765
No 140
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=98.59 E-value=2.2e-06 Score=76.28 Aligned_cols=155 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-- 85 (287)
..|+.+|+.-||+..-...|. ..|+|.|.+|..|=... .+ .+.+..+...+.+.-+.+... +.|...++.
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~--A~ga~FIRv~~~~g~~~--~d--~G~~~~~a~e~~r~R~~l~a~--v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAA--ATGADFIRVNVFVGAYV--TD--EGIIEGCAGELLRYRKRLGAD--VKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHH--HhCCCEEEecCEEceec--cc--CccccccHHHHHHHHHHcCCC--eEEEeeechhh
Confidence 569999999988876444443 23789999985544322 11 122333344444443433222 444443332
Q ss_pred C--CChhhHHHHHHH-HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 F--PNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g--~~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+ ....+..+.++. ++..++|+|+|+|..... +++.+.++++++.+++||+.++|+ |++.+.++|.. ||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~------~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~~--AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKATGE------PPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLSY--AD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCcccCC------CCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHHh--CC
Confidence 1 112233444544 477899999999875432 578899999999999999999999 57999999984 99
Q ss_pred EEEEehhhhhCccchhc
Q 023070 163 GVLSAESLLENPALFAG 179 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~ 179 (287)
|+.+|+.+-.|=.+...
T Consensus 223 G~IVGS~~K~~G~~~n~ 239 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWENP 239 (254)
T ss_pred EEEEeeeeeeCCEeCCc
Confidence 99999987655554443
No 141
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.59 E-value=1.2e-06 Score=80.21 Aligned_cols=138 Identities=15% Similarity=0.150 Sum_probs=99.7
Q ss_pred EEEEecCCCHHHHHHHHHHHc--CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 11 LFVQFCANDPEILLNAARRVE--PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~--~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
+.+.+ |-.++++.++.++++ +++|.|-|... . .+.+.+.+.++.+++.. +.+|.+-
T Consensus 99 ~~vav-G~~~~d~er~~~L~~~~~g~D~iviD~A--------h-------Ghs~~~i~~ik~ik~~~P~~~vIaG----- 157 (346)
T PRK05096 99 VMVST-GTSDADFEKTKQILALSPALNFICIDVA--------N-------GYSEHFVQFVAKAREAWPDKTICAG----- 157 (346)
T ss_pred EEEEe-cCCHHHHHHHHHHHhcCCCCCEEEEECC--------C-------CcHHHHHHHHHHHHHhCCCCcEEEe-----
Confidence 45544 667799999999887 48898877631 1 25678889999999876 6777655
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe------ccCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHh
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh------~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+ --+.+.++.|.++|+|.+-|- ..|+.. ..-|.+.+..+.++.+ ..++|||+.|||++.-|+.++|.
T Consensus 158 N-V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v--tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla- 233 (346)
T PRK05096 158 N-VVTGEMVEELILSGADIVKVGIGPGSVCTTRVK--TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG- 233 (346)
T ss_pred c-ccCHHHHHHHHHcCCCEEEEcccCCccccCccc--cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH-
Confidence 1 233467788999999999772 122221 1223456666665554 45899999999999999999998
Q ss_pred cCccEEEEehhhhhC
Q 023070 159 TGCEGVLSAESLLEN 173 (287)
Q Consensus 159 ~gad~VmiGR~~l~n 173 (287)
.|||.||+|+-+-+-
T Consensus 234 aGAd~VMlGsllAGt 248 (346)
T PRK05096 234 GGADFVMLGGMLAGH 248 (346)
T ss_pred cCCCEEEeChhhcCc
Confidence 699999999876543
No 142
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.59 E-value=8.4e-07 Score=86.05 Aligned_cols=141 Identities=19% Similarity=0.178 Sum_probs=100.9
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
.+-.+.|-.++....+..+++.|+|.|-|... .+ .-..+.+.++.+++.. +.+|.+. +
T Consensus 217 ~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a--------~~-------~~~~~~~~i~~ik~~~p~~~v~ag-----n- 275 (479)
T PRK07807 217 RVAAAVGINGDVAAKARALLEAGVDVLVVDTA--------HG-------HQEKMLEALRAVRALDPGVPIVAG-----N- 275 (479)
T ss_pred chHhhhccChhHHHHHHHHHHhCCCEEEEecc--------CC-------ccHHHHHHHHHHHHHCCCCeEEee-----c-
Confidence 34445555566666666677889988766531 11 2467888999998876 6788764 1
Q ss_pred hhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
-.+.+-++.+.++|+|.|-|-= .|+. ...-+.+++..+.++.+ ..++|||+.|||.++.|+.++|. .|
T Consensus 276 v~t~~~a~~l~~aGad~v~vgig~gsictt~~--~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~-~g 352 (479)
T PRK07807 276 VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRM--MTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALA-AG 352 (479)
T ss_pred cCCHHHHHHHHHcCCCEEEECccCCccccccc--ccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH-cC
Confidence 2345667788899999997631 1221 12223578888888877 45899999999999999999999 59
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
||+||+|+.+..-..
T Consensus 353 a~~v~~g~~~ag~~E 367 (479)
T PRK07807 353 ASNVMIGSWFAGTYE 367 (479)
T ss_pred CCeeeccHhhccCcc
Confidence 999999998875443
No 143
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.58 E-value=4.6e-07 Score=84.09 Aligned_cols=137 Identities=23% Similarity=0.261 Sum_probs=92.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~ 89 (287)
+.+-+ |..++++.++..++++|+|.|-|... . -+.+.+.+.++.+++.. ++||.+--
T Consensus 99 V~aav-g~~~~~~er~~~L~~agvD~ivID~a--------~-------g~s~~~~~~ik~ik~~~~~~~viaGN------ 156 (352)
T PF00478_consen 99 VAAAV-GTRDDDFERAEALVEAGVDVIVIDSA--------H-------GHSEHVIDMIKKIKKKFPDVPVIAGN------ 156 (352)
T ss_dssp EEEEE-ESSTCHHHHHHHHHHTT-SEEEEE-S--------S-------TTSHHHHHHHHHHHHHSTTSEEEEEE------
T ss_pred EEEEe-cCCHHHHHHHHHHHHcCCCEEEcccc--------C-------ccHHHHHHHHHHHHHhCCCceEEecc------
Confidence 34444 55557788888888999999877521 1 14566778888888877 48888761
Q ss_pred hhHHHHHHHHHHcCCCEEEEec------cCCCCcCCCCccccHHHHHHHHh---hCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN---ALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~------rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
--+.+-++.|.++|+|+|-|-= .|+... .-|.+.+..+.++.+ ..++|||+.|||++.-|+.++|. .|
T Consensus 157 V~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~--GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla-~G 233 (352)
T PF00478_consen 157 VVTYEGAKDLIDAGADAVKVGIGPGSICTTREVT--GVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALA-AG 233 (352)
T ss_dssp E-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHH--SBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHH-TT
T ss_pred cCCHHHHHHHHHcCCCEEEEeccCCccccccccc--ccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeee-ec
Confidence 2335667788999999998841 112111 112355666655544 45799999999999999999998 69
Q ss_pred ccEEEEehhhhh
Q 023070 161 CEGVLSAESLLE 172 (287)
Q Consensus 161 ad~VmiGR~~l~ 172 (287)
||.||+|+.+-.
T Consensus 234 Ad~VMlG~llAg 245 (352)
T PF00478_consen 234 ADAVMLGSLLAG 245 (352)
T ss_dssp -SEEEESTTTTT
T ss_pred ccceeechhhcc
Confidence 999999987643
No 144
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.57 E-value=3.9e-07 Score=80.06 Aligned_cols=89 Identities=26% Similarity=0.411 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++++.+++.|++.++|......... ...+++.++++.+.+++||.+.|||++.++++++++ .|||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g---~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEG---GPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LGVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccC---CCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 47889999999999999999755433111 246889999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887754
No 145
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=98.57 E-value=3.2e-07 Score=78.08 Aligned_cols=126 Identities=25% Similarity=0.458 Sum_probs=82.7
Q ss_pred CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE----ec-------
Q 023070 43 CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----HG------- 111 (287)
Q Consensus 43 cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v----h~------- 111 (287)
-|.....++ |-+-|.||..+++|..+ +.+||..|.|+|.- ++ ++.++..|+|+|.= +.
T Consensus 51 vPadiR~~G--gV~RMsDP~mIKei~~a----VsiPVMAk~RiGHF----VE-AQIlE~l~vDYiDESEvlt~AD~~hhI 119 (296)
T KOG1606|consen 51 VPADIRAQG--GVARMSDPRMIKEIKNA----VSIPVMAKVRIGHF----VE-AQILEALGVDYIDESEVLTPADWDHHI 119 (296)
T ss_pred CCHhHHhcC--CeeecCCHHHHHHHHHh----ccchhhhhhhhhhh----hH-HHHHHHhccCccchhhhcccccccchh
Confidence 355443333 67889999988777654 57999999999743 22 56677777777622 00
Q ss_pred ------------------------------cCCCCcCC--------------------------------CCccccHHHH
Q 023070 112 ------------------------------RTRDEKDG--------------------------------KKFRADWNAI 129 (287)
Q Consensus 112 ------------------------------rt~~~~~~--------------------------------~~~~~~~~~i 129 (287)
||...... ....+-++++
T Consensus 120 ~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv 199 (296)
T KOG1606|consen 120 EKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLV 199 (296)
T ss_pred hhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHH
Confidence 11100000 0001224455
Q ss_pred HHHHhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 130 KAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 130 ~~i~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
++.++.-++||+ +.|||.||.|+.-+++ .|||||.+|.+.+..++=++..
T Consensus 200 ~~t~q~GrlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~a 251 (296)
T KOG1606|consen 200 KQTKQLGRLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKRA 251 (296)
T ss_pred HHHHHcCCCceEEecccCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHHH
Confidence 555555578885 8999999999998887 6999999999998777655543
No 146
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.56 E-value=1.6e-06 Score=81.38 Aligned_cols=140 Identities=21% Similarity=0.125 Sum_probs=85.2
Q ss_pred HHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHH
Q 023070 20 PEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKM 98 (287)
Q Consensus 20 ~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~ 98 (287)
+.++.+-++ ++++|+|.|-++..- +...|+..- .++..+.++++. .++||.++- -.+.+.++.
T Consensus 140 ~~~~~e~a~~l~eaGvd~I~vhgrt-----~~~~h~~~~-~~~~~i~~~ik~----~~ipVIaG~------V~t~e~A~~ 203 (368)
T PRK08649 140 PQRAQELAPTVVEAGVDLFVIQGTV-----VSAEHVSKE-GEPLNLKEFIYE----LDVPVIVGG------CVTYTTALH 203 (368)
T ss_pred CcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCCc-CCHHHHHHHHHH----CCCCEEEeC------CCCHHHHHH
Confidence 333444444 567799999998531 112222210 145555555544 478998731 122345666
Q ss_pred HHHcCCCEEEEeccCCCC----c-CCCCccccHHHHHHHHhh-------C---CCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 99 LEDAGCSLLAVHGRTRDE----K-DGKKFRADWNAIKAVKNA-------L---RIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 99 l~~~G~~~I~vh~rt~~~----~-~~~~~~~~~~~i~~i~~~-------~---~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+.++|+|.|.+ |+.... + ....+.+.+..+.++.+. . ++|||+.|||++..|+.++|. .|||+
T Consensus 204 l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla-lGAd~ 281 (368)
T PRK08649 204 LMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA-CGADA 281 (368)
T ss_pred HHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH-cCCCe
Confidence 77899999977 433210 0 011112334445444321 1 599999999999999999998 69999
Q ss_pred EEEehhhhhCccch
Q 023070 164 VLSAESLLENPALF 177 (287)
Q Consensus 164 VmiGR~~l~nP~lf 177 (287)
||+|+.+..-..-.
T Consensus 282 Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 282 VMLGSPLARAAEAP 295 (368)
T ss_pred ecccchhcccccCC
Confidence 99999998654433
No 147
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.56 E-value=5.7e-06 Score=74.30 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+++.+.++++..++ .+..+.+-+.. .+ + ++++.++|++.|.+|+|+.... ..+++...++.+.. .
T Consensus 145 ~~~~l~~li~~a~~-lGl~~lvevh~---~~---E-~~~A~~~gadiIgin~rdl~~~-----~~d~~~~~~l~~~~p~~ 211 (260)
T PRK00278 145 DDEQLKELLDYAHS-LGLDVLVEVHD---EE---E-LERALKLGAPLIGINNRNLKTF-----EVDLETTERLAPLIPSD 211 (260)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeCC---HH---H-HHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHhCCCC
Confidence 35677888887755 46666655432 22 2 3456688999999998875421 35677788887765 3
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+|+|+-|||.|++++.++++ .|+|+|.+|++++..++.-.
T Consensus 212 ~~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 212 RLVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGA 251 (260)
T ss_pred CEEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHH
Confidence 69999999999999999998 59999999999998777543
No 148
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.55 E-value=5.9e-07 Score=83.88 Aligned_cols=110 Identities=23% Similarity=0.292 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC------CCccccHHHHHH
Q 023070 59 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKA 131 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~------~~~~~~~~~i~~ 131 (287)
.+++-+.+.|+.+++.. +.||++|+-.+...++. +..+.++|+|+|+|.|........ ..|-+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~---~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDI---AAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHH---HHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHH---HHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46778899999999888 89999999876654332 233778999999998764332110 001111112333
Q ss_pred HHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 132 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 132 i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+.+. + ++.++++||+.|+.|+.+++. .|||+|.+||++|-
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~igt~~li 308 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-LGADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-SHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEecchhhh
Confidence 3222 1 489999999999999999998 69999999999874
No 149
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.55 E-value=3.8e-07 Score=80.94 Aligned_cols=87 Identities=14% Similarity=0.286 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-..... +. +.+++.++++.+.+ .||.+.|||+|.++++++++ .|||-|++|+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g~--~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~-~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-NS--VENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc-CC--cchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHH-CCCCEEEECch
Confidence 4889999999999999999975543211 11 47889999999887 79999999999999999998 69999999999
Q ss_pred hhhCccchhchh
Q 023070 170 LLENPALFAGFR 181 (287)
Q Consensus 170 ~l~nP~lf~~~~ 181 (287)
++.||.+++++.
T Consensus 105 a~~~p~~l~~~~ 116 (241)
T PRK14114 105 VLEDPSFLKFLK 116 (241)
T ss_pred hhCCHHHHHHHH
Confidence 999999999883
No 150
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.55 E-value=2.6e-06 Score=76.27 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=95.6
Q ss_pred CEEEEecCC--CHHHHHHHHH-HHcCCCCEEEEe--ccCCh---hhhhcCcccccccC--ChHHHHHHHHHHh-hccCCc
Q 023070 10 PLFVQFCAN--DPEILLNAAR-RVEPYCDYVDIN--LGCPQ---RIARRGNYGAFLMD--NLPLVKSLVEKLA-LNLNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~-~~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~~--~~~~~~~iv~~v~-~~~~~p 78 (287)
-++.=+... +.+...++++ +.+.|+|.|||- |.-|. +..++- .--+|-+ +.+.+.+++++++ +..++|
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a-~~~AL~~G~~~~~~~~~~~~~r~~~~~~p 91 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAA-SLRALAAGVTLADVFELVREIREKDPTIP 91 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 356555554 6678888887 456799999997 34444 122211 1112222 4667888999998 556788
Q ss_pred EEEEecCCCCh--h-hHHHHHHHHHHcCCCEEEE--------------------------eccCCCC-------------
Q 023070 79 VSCKIRVFPNL--Q-DTIKYAKMLEDAGCSLLAV--------------------------HGRTRDE------------- 116 (287)
Q Consensus 79 v~vKiR~g~~~--~-~~~~~a~~l~~~G~~~I~v--------------------------h~rt~~~------------- 116 (287)
+.+= ..++. . ...+|++.+.++|+++++| .+.+...
T Consensus 92 ~vlm--~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfI 169 (258)
T PRK13111 92 IVLM--TYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFV 169 (258)
T ss_pred EEEE--ecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 6432 11110 0 2223444455555555444 2111100
Q ss_pred ----cCCCCc-----ccc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ----KDGKKF-----RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ----~~~~~~-----~~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+| +.+ .+.++.+++..++||++.+||++++++.++++ .||||.+|++++
T Consensus 170 Y~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv 232 (258)
T PRK13111 170 YYVSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALV 232 (258)
T ss_pred EEEeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHH
Confidence 001111 123 35889999988999999999999999999986 499999999987
No 151
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.54 E-value=2.8e-06 Score=73.21 Aligned_cols=152 Identities=18% Similarity=0.327 Sum_probs=88.6
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
++.+.|..-|+..+.+.++.+ +.|++.|.+-+. + |... .+..+-.++++.+++.++.|+.+.+-.
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~~~-~~~~~~~~~~~~i~~~~~~~~~v~l~~--- 66 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVM--------D--GHFV-PNLTFGPPVVKALRKHTDLPLDVHLMV--- 66 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc--------c--CCCC-CccccCHHHHHHHHhhCCCcEEEEeee---
Confidence 357888899999999999855 568999988421 0 1000 011111234455544333444332211
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCC--------------------------C----------------c-CCCCc-cc
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E----------------K-DGKKF-RA 124 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~--------------------------~----------------~-~~~~~-~~ 124 (287)
.+..++++.+.++|+++++||+.... + . .+..+ ..
T Consensus 67 -~d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~ 145 (211)
T cd00429 67 -ENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKF 145 (211)
T ss_pred -CCHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCccc
Confidence 12234455555666777666642100 0 0 00011 12
Q ss_pred cH---HHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 125 DW---NAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 125 ~~---~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+| +.++++++.. ++||++.|||+. +++.++++ .|+|+|.+|++++..++...
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~-~gad~iivgsai~~~~~~~~ 205 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAE-AGADVLVAGSALFGSDDYAE 205 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHH-cCCCEEEECHHHhCCCCHHH
Confidence 23 3455555544 489999999985 99999887 69999999999998776544
No 152
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=3.3e-06 Score=71.85 Aligned_cols=123 Identities=15% Similarity=0.225 Sum_probs=88.1
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChH-HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLP-LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~-~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~ 104 (287)
.-.+++.|++.|-+..- .-.||+ .+.++++..+ ..+.-++..+. +++-+..+.++|+
T Consensus 91 Vd~L~~~Ga~IIA~DaT--------------~R~RP~~~~~~~i~~~k-~~~~l~MAD~S-------t~ee~l~a~~~G~ 148 (229)
T COG3010 91 VDALAEAGADIIAFDAT--------------DRPRPDGDLEELIARIK-YPGQLAMADCS-------TFEEGLNAHKLGF 148 (229)
T ss_pred HHHHHHCCCcEEEeecc--------------cCCCCcchHHHHHHHhh-cCCcEEEeccC-------CHHHHHHHHHcCC
Confidence 33455667777766532 224666 7778887733 33444554432 2333555678999
Q ss_pred CEE--EEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 105 SLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 105 ~~I--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|+| |++|.|.... .+..+|+..++++.+ .+++||+.|.+.||+.+.++++ .||++|.+|. ++..|.
T Consensus 149 D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga~aVvVGs-AITRp~ 216 (229)
T COG3010 149 DIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGADAVVVGS-AITRPE 216 (229)
T ss_pred cEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCCeEEEECc-ccCCHH
Confidence 999 7888887433 223589999999988 7999999999999999999999 5999999995 556665
No 153
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.53 E-value=2.7e-06 Score=76.70 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=93.0
Q ss_pred CCCEEEEecCCC--------HHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccC
Q 023070 8 DRPLFVQFCAND--------PEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLN 76 (287)
Q Consensus 8 ~~p~~~Qi~g~~--------~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~ 76 (287)
+.|+++.+.+.. ...+.++.+.++.|+|.|++-+- +|+. ..+.+.+.+.++++ ..+
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~----------~g~~---~~~~~~~~~~~v~~~~~~~g 139 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVN----------VGSE---TEAEMLEDLGEVAEECEEWG 139 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEe----------cCCh---hHHHHHHHHHHHHHHHHHcC
Confidence 567788766321 12223344467789999888631 1211 01223444444433 247
Q ss_pred CcEEEEec-------CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC--
Q 023070 77 VPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 147 (287)
Q Consensus 77 ~pv~vKiR-------~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-- 147 (287)
+|+.+=.. ...+.+.....++.+.+.|+|+|-.. + ..+.+.++++.+..++||++.|||+
T Consensus 140 ~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~--~~~~~~l~~~~~~~~ipV~a~GGi~~~ 208 (267)
T PRK07226 140 MPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------Y--TGDPESFREVVEGCPVPVVIAGGPKTD 208 (267)
T ss_pred CcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------C--CCCHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 88776321 12233344455777889999999443 1 1356888888887789999999999
Q ss_pred CHHHHHHHHH---hcCccEEEEehhhhhCccc
Q 023070 148 HMEDVQKCLE---ETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 148 s~~da~~~l~---~~gad~VmiGR~~l~nP~l 176 (287)
+.+++.+++. +.||+|+.+||.++..|+.
T Consensus 209 ~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p 240 (267)
T PRK07226 209 TDREFLEMVRDAMEAGAAGVAVGRNVFQHEDP 240 (267)
T ss_pred CHHHHHHHHHHHHHcCCcEEehhhhhhcCCCH
Confidence 8888887762 3699999999999987763
No 154
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.52 E-value=1.8e-07 Score=82.41 Aligned_cols=89 Identities=24% Similarity=0.470 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+++.|++.++|..-.... .+ .+.+++.++++.+.+.+||.+.|||+|.+|++++++ .||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~-~g--~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~-~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK-EG--RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLD-AGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC-CT--HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHH-TT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc-cC--chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHH-hCCCEEEeChH
Confidence 578899999999999999997543321 11 146889999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999998764
No 155
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=98.50 E-value=4e-06 Score=73.19 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=51.5
Q ss_pred cccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 123 RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 123 ~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+.+.+.++.+++.+ ++|++..|||+|+++++++++ .|||+|++|..++.||.++.++
T Consensus 164 ~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGs~~~~dp~~~~~~ 221 (223)
T TIGR01768 164 PVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAE-AGADTIVTGNVIEEDVDKALET 221 (223)
T ss_pred CcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHH-cCCCEEEECcHHhhCHHHHHHh
Confidence 45689999999988 899999999999999999997 5999999999999999887653
No 156
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.50 E-value=6.2e-07 Score=78.50 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+++.+.++.+.+.|+..+++-.=+... ..++.+.+.++++.+.+++||-..|||+|.+++..+++ .|++-|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~---~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~-~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAK---AGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLD-AGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccc---cCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHH-CCCCEEEEecc
Confidence 478899999999999999886443321 12257889999999999999999999999999999999 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.++.++-.
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999998764
No 157
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.48 E-value=6.7e-06 Score=75.51 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=87.2
Q ss_pred CCCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 7 EDRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.++|+.|.|.+..+ +.+.+..+ +++.+++.|-+.+|.|.. ++.+++ .++.|...+.
T Consensus 54 tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~-~Gi~v~~~v~ 111 (320)
T cd04743 54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEA-IGISTYLHVP 111 (320)
T ss_pred cCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHH-CCCEEEEEeC
Confidence 36788888754311 11222233 345677777777655531 133332 3666765542
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHH-HHHHhh------CCCcEEEecCCCCHHHHHHHH
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAI-KAVKNA------LRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i-~~i~~~------~~ipVi~nGgI~s~~da~~~l 156 (287)
+...++.+++.|+|.|++.|....+.-+. +.-.-|+.+ ..+.+. .++|||+.|||.+...+..++
T Consensus 112 -------s~~~A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal 184 (320)
T cd04743 112 -------SPGLLKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS 184 (320)
T ss_pred -------CHHHHHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH
Confidence 24567889999999999988776543211 001123322 222211 279999999999999998888
Q ss_pred HhcCc--------cEEEEehhhhhCccc
Q 023070 157 EETGC--------EGVLSAESLLENPAL 176 (287)
Q Consensus 157 ~~~ga--------d~VmiGR~~l~nP~l 176 (287)
. .|+ +||.+|+.++.-+..
T Consensus 185 a-LGA~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 185 A-LAAPLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred H-cCCcccccccccEEEEccHHhcchhh
Confidence 7 467 899999999876654
No 158
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.48 E-value=6.9e-07 Score=79.64 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+++.|+++++|-.=.. ..+.+.+.++++.+ +++||.+.|||++ ++++++++ .|||-|++|+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg------g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~-~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA------DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLD-AGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC------CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHH-cCCCEEEEchH
Confidence 5789999999999999999864422 11467899999998 8899999999996 99999998 69999999999
Q ss_pred hhhC----ccchhchhh
Q 023070 170 LLEN----PALFAGFRT 182 (287)
Q Consensus 170 ~l~n----P~lf~~~~~ 182 (287)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 999987754
No 159
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=98.46 E-value=4.6e-06 Score=74.79 Aligned_cols=147 Identities=14% Similarity=0.227 Sum_probs=95.1
Q ss_pred CCCCEEEEecCCCHH-------HH-HHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---c
Q 023070 7 EDRPLFVQFCANDPE-------IL-LNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---L 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~-------~~-~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~ 75 (287)
.+.++++.+.++.|. .+ ..+.+.++.|+|+|++-.- .|+ ..+.+.+ +.+.++++. .
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~ 135 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW 135 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence 356788888554332 22 3344567789999888532 222 1122333 445555443 4
Q ss_pred CCcEEEEec-----CCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC--
Q 023070 76 NVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-- 147 (287)
Q Consensus 76 ~~pv~vKiR-----~g~-~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-- 147 (287)
++|+.+..- ++. +.+.....++...+.|+|+|-+. + ..+.+.++++.+..++||++.|||+
T Consensus 136 g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~~iPVva~GGi~~~ 204 (258)
T TIGR01949 136 GVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGCPAPVVVAGGPKTN 204 (258)
T ss_pred CCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhCCCcEEEecCCCCC
Confidence 788877433 222 22233344677889999999763 1 1367889999888899999999999
Q ss_pred CHHHHHHHH----HhcCccEEEEehhhhhCccchh
Q 023070 148 HMEDVQKCL----EETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 148 s~~da~~~l----~~~gad~VmiGR~~l~nP~lf~ 178 (287)
|.+++.+.+ + .|++|+.+||.++..++...
T Consensus 205 ~~~~~~~~i~~~~~-aGa~Gia~g~~i~~~~dp~~ 238 (258)
T TIGR01949 205 SDREFLQMIKDAME-AGAAGVAVGRNIFQHDDPVG 238 (258)
T ss_pred CHHHHHHHHHHHHH-cCCcEEehhhHhhcCCCHHH
Confidence 656555444 5 69999999999998776443
No 160
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.46 E-value=4.5e-06 Score=73.10 Aligned_cols=146 Identities=16% Similarity=0.265 Sum_probs=99.2
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCC
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVF 86 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g 86 (287)
+.++|...|+..+.+-.+.++ .|+|.+-+- =|+=++ +.-+--++++++++. +++|+.|-+-.
T Consensus 2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvp-------------n~tfg~~~i~~i~~~~~~~~~dvHLMv- 67 (220)
T PRK08883 2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVP-------------NLTFGAPICKALRDYGITAPIDVHLMV- 67 (220)
T ss_pred cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccC-------------ccccCHHHHHHHHHhCCCCCEEEEecc-
Confidence 457889999999999888765 488875554 222222 222234567777776 57888777543
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCc-
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF- 122 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~- 122 (287)
++...+++.+.++|++.|++|.-.... ..++.|
T Consensus 68 ---~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 68 ---KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 456677888889999999998531100 011111
Q ss_pred ---cccHHHHHHHHhhC-----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 ---RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ---~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+..++.++++++.. ++||.+-|||+ .+.+.++.+ .|||++.+|++++..++
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~-aGAd~vVvGSaIf~~~d 203 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE-AGADMFVAGSAIFGQPD 203 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 22345677776654 48999999997 899998888 69999999999876544
No 161
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=98.45 E-value=1.1e-07 Score=86.24 Aligned_cols=153 Identities=16% Similarity=0.227 Sum_probs=109.3
Q ss_pred CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
++-..|.+.+...+ +|.|..|+|+.||...-.++ +|.++-..|..+.|+..-|+..+.+|+.-|+-. +..+..+.+
T Consensus 215 ynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTP--Nitd~reva 291 (471)
T KOG1799|consen 215 YNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIVDCEVCGWINAKATIPMVSKMTP--NITDKREVA 291 (471)
T ss_pred hhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhhhHHHhhhhhhccccccccccCC--Ccccccccc
Confidence 45556666665544 58999999999999755554 799999999999999999998889999999755 445566777
Q ss_pred HHHHHcCCCEEEEe---------------------ccCCCCcCCCC--ccccHHHHHHHHhhC-CCcEEEecCCCCHHHH
Q 023070 97 KMLEDAGCSLLAVH---------------------GRTRDEKDGKK--FRADWNAIKAVKNAL-RIPVLANGNVRHMEDV 152 (287)
Q Consensus 97 ~~l~~~G~~~I~vh---------------------~rt~~~~~~~~--~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da 152 (287)
+.....|+..|+.. +|+..+.+.++ .|..+..+-.|++.. ..|+.+.|||.|..|+
T Consensus 292 r~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~ 371 (471)
T KOG1799|consen 292 RSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDA 371 (471)
T ss_pred hhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhcCccccccCcccccch
Confidence 87788888777441 11111111111 012233333344433 5889999999999999
Q ss_pred HHHHHhcCccEEEEehhhhhCc
Q 023070 153 QKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+++. .|+.-|.+..|.+..-
T Consensus 372 ~~Fil-~Gs~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 372 AEFIL-LGSNTVQVCTGVMMHG 392 (471)
T ss_pred hhHhh-cCCcHhhhhhHHHhcC
Confidence 99998 5999999999886543
No 162
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=98.44 E-value=1.6e-05 Score=70.95 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=99.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV-- 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~-- 85 (287)
..|+.+|+.-||+..-...|. ..|+|+|.+|..|=.. + ++ -+.+..+...+.+.-+.+.. ++.|...++.
T Consensus 79 ~~p~GvnvL~nd~~aal~iA~--a~ga~FIRv~~~~g~~-~-~d--~G~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh 150 (257)
T TIGR00259 79 SIPLGINVLRNDAVAALAIAM--AVGAKFIRVNVLTGVY-A-SD--QGIIEGNAGELIRYKKLLGS--EVKILADIVVKH 150 (257)
T ss_pred CCCeeeeeecCCCHHHHHHHH--HhCCCEEEEccEeeeE-e-cc--cccccccHHHHHHHHHHcCC--CcEEEeceeecc
Confidence 458999999998875444443 3478999998544332 1 11 12333445555555555542 3444333322
Q ss_pred CC--ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 FP--NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 g~--~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+. ......+.++.....| +|+|+|+|..... +.||+.++++++.. ++||+.+||+ +++.+.++++. +
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~------~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~--a 221 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTTGT------EVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI--A 221 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC------CCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh--C
Confidence 21 1234556677666555 9999999875432 58999999998855 6999999999 58999999985 9
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|||.+|+++- +|.
T Consensus 222 dGviVgS~~K-~~G 234 (257)
T TIGR00259 222 DGVIVATTIK-KDG 234 (257)
T ss_pred CEEEECCCcc-cCC
Confidence 9999999875 444
No 163
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.44 E-value=1e-06 Score=78.28 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+.|+.+++.|+++++|-.= + ..|.+.++++.+.+++||...|||++ ++++++++ .|||.|.+|..++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g---~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------G---PNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------C---CCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 88999999999999988744 1 23889999999999999999999998 99999999 69999999999999
Q ss_pred C----ccchhchhh
Q 023070 173 N----PALFAGFRT 182 (287)
Q Consensus 173 n----P~lf~~~~~ 182 (287)
| |.++.++..
T Consensus 110 ~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 110 KGKFDLKRLKEIVS 123 (253)
T ss_pred CCCCCHHHHHHHHH
Confidence 8 778887754
No 164
>PLN02334 ribulose-phosphate 3-epimerase
Probab=98.44 E-value=1.6e-05 Score=70.06 Aligned_cols=143 Identities=10% Similarity=0.229 Sum_probs=93.8
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
.+.|+.+.+.-++|+++.+.+ .+.|+|+|-+|++ +. .+...+.++.+++. +.-+.+-+..
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~--~~~gad~v~vH~~q~~----------------~d~~~~~~~~i~~~-g~~iGls~~~ 124 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDF--AKAGASIFTFHIEQAS----------------TIHLHRLIQQIKSA-GMKAGVVLNP 124 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHH--HHcCCCEEEEeecccc----------------chhHHHHHHHHHHC-CCeEEEEECC
Confidence 345678999999999988776 5668999999975 11 12234555555432 3323333221
Q ss_pred CCChhhHHHHHHHHHHcC-CCEE---EEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 FPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G-~~~I---~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
....+.++.+.+.| +|+| +|++.+..+. ..+..++.++++++. .++||.+-||| +++++.++.+ .|
T Consensus 125 ----~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~-aG 195 (229)
T PLN02334 125 ----GTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAE-AG 195 (229)
T ss_pred ----CCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHH-cC
Confidence 12334455555564 9999 4454333221 113445677787776 46899999999 6899999998 69
Q ss_pred ccEEEEehhhhhCccch
Q 023070 161 CEGVLSAESLLENPALF 177 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf 177 (287)
+|+|.+|++++..++..
T Consensus 196 ad~vvvgsai~~~~d~~ 212 (229)
T PLN02334 196 ANVIVAGSAVFGAPDYA 212 (229)
T ss_pred CCEEEEChHHhCCCCHH
Confidence 99999999988766643
No 165
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.41 E-value=1e-05 Score=71.40 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=84.2
Q ss_pred HHHHH-HHHHHcCCCCEE--EEeccCChhhhhcCcccccccCChHHHHHHHHHHhh---ccCCcEEEEecC-CC------
Q 023070 21 EILLN-AARRVEPYCDYV--DINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL---NLNVPVSCKIRV-FP------ 87 (287)
Q Consensus 21 ~~~~~-aA~~~~~g~d~I--diN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~---~~~~pv~vKiR~-g~------ 87 (287)
..+.. +.+.++.|+|+| .+|.+-. ..+...+.+.++++ ..++|+.+-... |.
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~---------------~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~ 140 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGSE---------------EEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEK 140 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCCc---------------hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCcc
Confidence 34433 334567799998 4554311 12223333333332 347888875543 11
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC--CCHHH----HHHHHHhcCc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV--RHMED----VQKCLEETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI--~s~~d----a~~~l~~~ga 161 (287)
+.++....++...+.|+|+|-+.. +.+++.++++++.+++||++.||+ .|+++ +.++++ .|+
T Consensus 141 ~~~~i~~~~~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~-~Ga 208 (235)
T cd00958 141 DPDLIAYAARIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAME-AGA 208 (235)
T ss_pred CHHHHHHHHHHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHH-cCC
Confidence 122333347778899999997731 126788999999899999999987 67766 666676 699
Q ss_pred cEEEEehhhhhCccch
Q 023070 162 EGVLSAESLLENPALF 177 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf 177 (287)
+||.+||.++..|+..
T Consensus 209 ~gv~vg~~i~~~~dp~ 224 (235)
T cd00958 209 AGVAVGRNIFQRPDPV 224 (235)
T ss_pred cEEEechhhhcCCCHH
Confidence 9999999999877643
No 166
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.40 E-value=3.3e-05 Score=66.64 Aligned_cols=140 Identities=14% Similarity=0.245 Sum_probs=90.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
++++-+--.||+.+ ++-+..+.|+|.|-+|+.+| +..+.++++.+++ .++++.+-+-. .
T Consensus 54 ~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~~~~----------------~~~~~~~i~~~~~-~g~~~~~~~~~---~ 112 (206)
T TIGR03128 54 KVLADLKTMDAGEY-EAEQAFAAGADIVTVLGVAD----------------DATIKGAVKAAKK-HGKEVQVDLIN---V 112 (206)
T ss_pred EEEEEEeeccchHH-HHHHHHHcCCCEEEEeccCC----------------HHHHHHHHHHHHH-cCCEEEEEecC---C
Confidence 45544422366543 22224566888888885433 1335666666655 47888876311 2
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.+.+.|++++.++..+..+... +..++.++++++..+ .+|.+.||| +++.+.++++ .|+|+|.+||
T Consensus 113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~---~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~-~Ga~~v~vGs 187 (206)
T TIGR03128 113 KDKVKRAKELKELGADYIGVHTGLDEQAKG---QNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIK-LGPDIVIVGG 187 (206)
T ss_pred CChHHHHHHHHHcCCCEEEEcCCcCcccCC---CCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHH-cCCCEEEEee
Confidence 234455666677899999997544433222 344677788877664 455569999 7899999997 6999999999
Q ss_pred hhhhCcc
Q 023070 169 SLLENPA 175 (287)
Q Consensus 169 ~~l~nP~ 175 (287)
+++..++
T Consensus 188 ai~~~~d 194 (206)
T TIGR03128 188 AITKAAD 194 (206)
T ss_pred hhcCCCC
Confidence 9887655
No 167
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.39 E-value=7.5e-06 Score=71.13 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKML 99 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l 99 (287)
...++...++.|+|.||+-+. +|.....+.+.+.+-+.++++.+ ++|+.+=+-.+ .+.++....++.+
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 444455567889999999752 55555567788888888888766 56665544333 3445667788889
Q ss_pred HHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 100 EDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 100 ~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++|+|+|-.. |... +.+..+.++.+++.+ ++||-++|||+|.+++.++++ .|++-+....
T Consensus 142 ~eaGADfvKTsTGf~~-------~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~-aGa~riGts~ 205 (211)
T TIGR00126 142 IDAGADFVKTSTGFGA-------GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIE-AGASRIGASA 205 (211)
T ss_pred HHhCCCEEEeCCCCCC-------CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HhhHHhCcch
Confidence 99999999654 3221 134455555555544 699999999999999999998 4888765543
No 168
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=98.39 E-value=1.5e-06 Score=77.99 Aligned_cols=105 Identities=25% Similarity=0.280 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
+|.+.-+=++.+++.++.|+.+|==+ + .+-|+.+.++|+++|+|+.-...| ....++..+.+.++.+++ +
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGil--t----~eDA~~Ave~G~~GIIVSNHGgRQ--lD~vpAtI~~L~Evv~aV~~r 278 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVL--T----GEDARKAVEAGVAGIIVSNHGGRQ--LDYVPATIEALPEVVKAVEGR 278 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeec--c----cHHHHHHHHhCCceEEEeCCCccc--cCcccchHHHHHHHHHHhcCc
Confidence 44455566777888889999999211 2 233666778999999995332222 223378889999999887 5
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+||...|||++..|+.++|. .||.+|.+||+++..
T Consensus 279 i~V~lDGGVR~G~DVlKALA-LGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 279 IPVFLDGGVRRGTDVLKALA-LGAKGVFIGRPIVWG 313 (363)
T ss_pred eEEEEecCcccchHHHHHHh-cccceEEecCchhee
Confidence 99999999999999999998 699999999987643
No 169
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=98.39 E-value=2e-06 Score=75.02 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.+++...|...+..|...+.+- .+. . ..+.+.++++++.+ ++||++.|||+|+++++++++ .|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~SG-----~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YSG-----A--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CCC-----C--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45677788888899996666554 211 1 25678999999998 999999999999999999997 59999999
Q ss_pred ehhhhhCccchhch
Q 023070 167 AESLLENPALFAGF 180 (287)
Q Consensus 167 GR~~l~nP~lf~~~ 180 (287)
|.+++.||.++.++
T Consensus 204 Gsai~~~p~~~~~~ 217 (219)
T cd02812 204 GNIVEEDPNAALET 217 (219)
T ss_pred CchhhCCHHHHHHH
Confidence 99999999988754
No 170
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.39 E-value=2e-06 Score=75.95 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+....||...|||+|.++++++++ .|||-|.+|+.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~ 104 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTI 104 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECch
Confidence 478999999999999999997554332 1 146779999998854459999999999999999998 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||.+++++..
T Consensus 105 a~~~p~~~~~~~~ 117 (232)
T PRK13586 105 VFTNFNLFHDIVR 117 (232)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999988653
No 171
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=98.38 E-value=1.5e-06 Score=85.23 Aligned_cols=92 Identities=10% Similarity=0.114 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH-----------HHHHHHHHh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 158 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~-----------~da~~~l~~ 158 (287)
.+++++|+.+.+.|+|.|++-.-+........-..+++.++++.+.+.+||.+.|||+|. +++.++|+
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~- 345 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR- 345 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-
Confidence 478999999999999999997665432111111345899999999999999999999997 66899998
Q ss_pred cCccEEEEehhhhhCc------------cchhchhh
Q 023070 159 TGCEGVLSAESLLENP------------ALFAGFRT 182 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP------------~lf~~~~~ 182 (287)
.|||-|.||++++.|| .++.++..
T Consensus 346 ~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~ 381 (538)
T PLN02617 346 SGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR 381 (538)
T ss_pred cCCCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence 6999999999999975 88877654
No 172
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=98.35 E-value=2.3e-05 Score=69.00 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=48.4
Q ss_pred cccHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 RADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~i-pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+.+.++++++.+++ ||++.|||+|++++.+++. .|||+|.+|.++..||.
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 4678999999999988 9999999999999999888 59999999999999998
No 173
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.33 E-value=3e-06 Score=75.34 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.+.++.+.+.|++.++|-.=.... + .+.+.+.++++.+.+.+||.+.|||+|.++++++++ .|||-|++|+.
T Consensus 31 ~~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~-~Ga~~vvigT~ 105 (243)
T TIGR01919 31 GSLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALT-GGRARVNGGTA 105 (243)
T ss_pred CCHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHH-cCCCEEEECch
Confidence 366788888999999999886433221 1 146789999999999999999999999999999999 59999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.||+++.++..
T Consensus 106 a~~~p~~~~~~~~ 118 (243)
T TIGR01919 106 ALENPWWAAAVIR 118 (243)
T ss_pred hhCCHHHHHHHHH
Confidence 9999999987753
No 174
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.32 E-value=3.1e-06 Score=74.74 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+-|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~-~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLK-RGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHH-cCCCeEEEcce
Confidence 478899999999999999997655432 1 257889999999999999999999999999999998 69999999999
Q ss_pred hhhCccchhchhh
Q 023070 170 LLENPALFAGFRT 182 (287)
Q Consensus 170 ~l~nP~lf~~~~~ 182 (287)
++.| .++.++..
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 88887654
No 175
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.30 E-value=6.8e-05 Score=64.32 Aligned_cols=141 Identities=19% Similarity=0.244 Sum_probs=92.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+++.+.-.++..+ .+-...+.|+|+|-+|.-. .++...++++.+++ .++++.+-+-
T Consensus 53 ~~~i~~~~~v~~~~~~-~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~-~g~~~~v~~~--- 111 (202)
T cd04726 53 DKIIVADLKTADAGAL-EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKK-YGKEVQVDLI--- 111 (202)
T ss_pred CCEEEEEEEeccccHH-HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHH-cCCeEEEEEe---
Confidence 5678887776777532 1122456799999998421 23445667777664 3555554311
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+..+..+..+ +.+.|++++.++ +++.. ..+ .....+.++++++..++||++.|||+ ++++.++++ .|+|+|.+
T Consensus 112 ~~~t~~e~~~-~~~~~~d~v~~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~~-~Gad~vvv 185 (202)
T cd04726 112 GVEDPEKRAK-LLKLGVDIVILHRGIDAQ-AAG--GWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFKK-AGADIVIV 185 (202)
T ss_pred CCCCHHHHHH-HHHCCCCEEEEcCccccc-ccC--CCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHHh-cCCCEEEE
Confidence 1223334444 667899999885 33222 111 23456778888876789999999995 999999998 59999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
|++++..++
T Consensus 186 Gsai~~~~d 194 (202)
T cd04726 186 GRAITGAAD 194 (202)
T ss_pred eehhcCCCC
Confidence 999876554
No 176
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.27 E-value=1.9e-05 Score=67.79 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=102.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEE-eccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDI-NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~Idi-N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
.-|+-|+ +-+|+.|..|. ++|+|.||| ||-|=...-+. =..+.+.++.++.|+-. ++|++|-+.-
T Consensus 61 ~lPICVS--aVep~~f~~aV---~AGAdliEIGNfDsFY~qGr~--------f~a~eVL~Lt~~tR~LLP~~~LsVTVPH 127 (242)
T PF04481_consen 61 NLPICVS--AVEPELFVAAV---KAGADLIEIGNFDSFYAQGRR--------FSAEEVLALTRETRSLLPDITLSVTVPH 127 (242)
T ss_pred CCCeEee--cCCHHHHHHHH---HhCCCEEEecchHHHHhcCCe--------ecHHHHHHHHHHHHHhCCCCceEEecCc
Confidence 3455554 46888887664 579999999 55544321111 13566778888887765 7888888765
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC--c-----cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--F-----RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~--~-----~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
-...++-+++|..|++.|+|.|.--|.+........ | .+.+.....+.+.+++||++.-|+.+ -.+--++.
T Consensus 128 iL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~-vT~PmAia- 205 (242)
T PF04481_consen 128 ILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSA-VTAPMAIA- 205 (242)
T ss_pred cccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcch-hhHHHHHH-
Confidence 556677789999999999999988777765432110 0 12344456677788999999999976 44545565
Q ss_pred cCccEEEEehhh
Q 023070 159 TGCEGVLSAESL 170 (287)
Q Consensus 159 ~gad~VmiGR~~ 170 (287)
.||.||.||.+.
T Consensus 206 aGAsGVGVGSav 217 (242)
T PF04481_consen 206 AGASGVGVGSAV 217 (242)
T ss_pred cCCcccchhHHh
Confidence 599999999875
No 177
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.24 E-value=6.4e-06 Score=76.51 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCC--CccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~--~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
...+++.++.|+|.|++.|-...+..+. ....-..++.++++.++ +|||+.|||.|.+++..++. .|||+|.+|+.
T Consensus 137 ~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT~ 215 (336)
T COG2070 137 VREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGTR 215 (336)
T ss_pred HHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhhh
Confidence 5678889999999999987655433221 11233577899999998 99999999999999999999 59999999999
Q ss_pred hhhCcc
Q 023070 170 LLENPA 175 (287)
Q Consensus 170 ~l~nP~ 175 (287)
++.-..
T Consensus 216 Fl~t~E 221 (336)
T COG2070 216 FLATKE 221 (336)
T ss_pred hhcccc
Confidence 986544
No 178
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.22 E-value=6.7e-05 Score=66.93 Aligned_cols=150 Identities=23% Similarity=0.264 Sum_probs=92.6
Q ss_pred CHHHHHHHHHH-HcCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHhhc-cCCcEEEEecCCCC-
Q 023070 19 DPEILLNAARR-VEPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLALN-LNVPVSCKIRVFPN- 88 (287)
Q Consensus 19 ~~~~~~~aA~~-~~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~- 88 (287)
+++...++++. .+.|+|.|||- |.-|. +..+..+ =-+|- -.++.+.++++.+++. .++|+.+=.-..+-
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~-~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~ 107 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAH-LRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF 107 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence 77899999985 57799999996 34444 1222111 01121 3577889999999854 67887654321100
Q ss_pred hhhHHHHHHHHHHcCCCEEEE-------------------------eccCCC-C-----------------cCCCCc---
Q 023070 89 LQDTIKYAKMLEDAGCSLLAV-------------------------HGRTRD-E-----------------KDGKKF--- 122 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~v-------------------------h~rt~~-~-----------------~~~~~~--- 122 (287)
.....+|.+.+.++|++.+.| .+-|.. . +.+-+|
T Consensus 108 ~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~ 187 (265)
T COG0159 108 NYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARN 187 (265)
T ss_pred HhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCc
Confidence 011223444555555555544 211110 0 011111
Q ss_pred c--cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 123 R--AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 123 ~--~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+ .. -+.++++++..++||...=||++++++.++.+. ||||.+|+++.
T Consensus 188 ~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 188 PVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred ccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 1 11 356888898889999998899999999999984 99999999886
No 179
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.22 E-value=2.8e-05 Score=67.26 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=82.5
Q ss_pred HHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC-CChhhHHHHHHHHHHcC
Q 023070 26 AARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 26 aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g-~~~~~~~~~a~~l~~~G 103 (287)
+-+.++.|+|.||+.+. +|..+-.+.+.+.+-+.++++.+ +.|+.+=+-.+ .+.++....++.+.++|
T Consensus 75 ve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~G 144 (203)
T cd00959 75 AREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAG 144 (203)
T ss_pred HHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 34467789999999752 45444456677777777777766 45555433333 23456677788889999
Q ss_pred CCEEEEe-ccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 104 CSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 104 ~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+|+|-.. |... ..+..+.++.+++. .++||-++|||+|.+++.+++. .||+-+
T Consensus 145 aD~IKTsTG~~~-------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~-~g~~ri 200 (203)
T cd00959 145 ADFIKTSTGFGP-------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIE-AGATRI 200 (203)
T ss_pred CCEEEcCCCCCC-------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHH-hChhhc
Confidence 9999664 3321 13445544444444 4699999999999999999998 488765
No 180
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.22 E-value=2.1e-05 Score=68.12 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=93.0
Q ss_pred CCCHHH--HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C-CChhh
Q 023070 17 ANDPEI--LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQD 91 (287)
Q Consensus 17 g~~~~~--~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g-~~~~~ 91 (287)
|+++-. ..++-..++.|+|.||+=+ +.|...-.+.+.+.+-|+++++.++-++.+|+=+ + .+.++
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee 141 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE 141 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence 444444 3444446788999999853 1345555689999999999999886445555433 3 34556
Q ss_pred HHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 92 TIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
....++.+.++|+|+|--+ |-. ++.+..+.++.+++.+ .+.|=++|||+|.+|+..+++. |+.-+...+
T Consensus 142 ~~~A~~i~~~aGAdFVKTSTGf~-------~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~a-ga~RiGtSs 213 (228)
T COG0274 142 KRKACEIAIEAGADFVKTSTGFS-------AGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEA-GATRIGTSS 213 (228)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCC-------CCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHH-hHHHhcccc
Confidence 6778888999999999443 322 2245666677777665 4889999999999999999984 665554443
No 181
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.21 E-value=2.6e-05 Score=69.79 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=94.7
Q ss_pred CEEEEecCC--CHHHHHHHHHHH-cCCCCEEEEe--ccCCh---hhhhcCccccccc--CChHHHHHHHHHHh-hccCCc
Q 023070 10 PLFVQFCAN--DPEILLNAARRV-EPYCDYVDIN--LGCPQ---RIARRGNYGAFLM--DNLPLVKSLVEKLA-LNLNVP 78 (287)
Q Consensus 10 p~~~Qi~g~--~~~~~~~aA~~~-~~g~d~IdiN--~gcP~---~~~~~~~~G~~l~--~~~~~~~~iv~~v~-~~~~~p 78 (287)
.++.=|... |.+.+.++++.+ +.|+|.|||- |.-|. +..++-. =-+|- -+.+.+.++++.++ +..++|
T Consensus 11 ~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~-~rAL~~G~~~~~~~~~~~~ir~~~~~~p 89 (259)
T PF00290_consen 11 ALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKAS-QRALKNGFTLEKIFELVKEIRKKEPDIP 89 (259)
T ss_dssp EEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHH-HHHHHTT--HHHHHHHHHHHHHHCTSSE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHH-HHHHHCCCCHHHHHHHHHHHhccCCCCC
Confidence 355555555 458888988865 5699999997 34454 1111110 01111 25677889999999 777888
Q ss_pred EEEEecCCCCh---hhHHHHHHHHHHcCCCEEEEec--------------------------cCCCC-------------
Q 023070 79 VSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHG--------------------------RTRDE------------- 116 (287)
Q Consensus 79 v~vKiR~g~~~---~~~~~~a~~l~~~G~~~I~vh~--------------------------rt~~~------------- 116 (287)
+.+=.-. +. ....+|++.+.++|++++++.. .|...
T Consensus 90 ivlm~Y~--N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFi 167 (259)
T PF00290_consen 90 IVLMTYY--NPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFI 167 (259)
T ss_dssp EEEEE-H--HHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEE
T ss_pred EEEEeec--cHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEE
Confidence 8654211 10 0123455555566666665521 11100
Q ss_pred ----cCCCCcc-----cc-HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 117 ----KDGKKFR-----AD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 117 ----~~~~~~~-----~~-~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
..+.+|. .. -+.++.+++.+++||.+.=||++++++.++. .++|||.||++++
T Consensus 168 Y~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v 230 (259)
T PF00290_consen 168 YLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFV 230 (259)
T ss_dssp EEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHH
T ss_pred EeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHH
Confidence 0111111 11 3668889999999999988999999999888 3899999999986
No 182
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.21 E-value=2.7e-06 Score=79.42 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-
Q 023070 59 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 137 (287)
Q Consensus 59 ~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~- 137 (287)
.+|-.+.+.+..+++.+..|+.+| |. ....+ +..+.+.|++.|.++..... +...+.+..+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~k---GV--~~~~D-~~~a~~tg~~~I~vsnhggr--qlD~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLK---GI--LAPED-AAGAGGTGADGIEVSNHGGR--QLDWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHh---CC--CCHHH-HHhhccCCceEEEEEcCCCc--cccCCCChHHHHHHHHHHhCC
Confidence 345555555556655555555555 22 12222 45667889999998532222 22233566788889998875
Q ss_pred -CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 138 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 138 -ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+||++.|||++..|+.+++. .|||+|++||+++.
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAlA-LGA~~v~igrp~L~ 307 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKALA-LGADAVGIGRPFLY 307 (360)
T ss_pred CeEEEecCCCCCHHHHHHHHH-hCCchhhhhHHHHH
Confidence 99999999999999999999 59999999999874
No 183
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.20 E-value=0.00019 Score=69.09 Aligned_cols=103 Identities=19% Similarity=0.340 Sum_probs=73.5
Q ss_pred HHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 64 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
+.++++.+++ .+.++.+.+ . +..+..+.++.+.+.|+++|.++.....+.. +...++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~-~--s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~---~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL-I--NVPDPVKRAVELEELGVDYINVHVGIDQQML---GKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe-c--CCCCHHHHHHHHHhcCCCEEEEEeccchhhc---CCChHHHHHHHHhhCCCcEEEE
Confidence 5566666665 466666542 1 2223345567788899999988754322211 1234678899988888999999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
||| +.+.+.++++ .|+|+|.+||+++..++
T Consensus 169 GGI-~~~n~~~~l~-aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 169 GGL-DAETAAKAVA-AGADIVIVGGNIIKSAD 198 (430)
T ss_pred CCC-CHHHHHHHHH-cCCCEEEEChHHcCCCC
Confidence 999 6899999998 59999999999987654
No 184
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=98.19 E-value=1.4e-05 Score=67.70 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
+-++.+.+.|+|+|.+......... ....+..++.++++++..++||++.|||. .+++.++++ .|+|+|.+|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~-~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLA-AGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHH-cCCCEEEEehHhhc
Confidence 3355677889999998765433211 11124678999999888899999999995 799998888 69999999999987
Q ss_pred Cccch
Q 023070 173 NPALF 177 (287)
Q Consensus 173 nP~lf 177 (287)
+++..
T Consensus 184 ~~~~~ 188 (196)
T cd00564 184 ADDPA 188 (196)
T ss_pred CCCHH
Confidence 66543
No 185
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.19 E-value=7.7e-05 Score=65.00 Aligned_cols=146 Identities=17% Similarity=0.216 Sum_probs=89.9
Q ss_pred CCCCEEEEecC-CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 7 EDRPLFVQFCA-NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g-~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
....+..+-.| .+.++....|++..+ +-+.|.|-.- .| .-.|+-|+-...+-.+.+.+. ++-|.--+
T Consensus 61 ~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi-------~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~ 130 (247)
T PF05690_consen 61 SGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVI-------GD--DKTLLPDPIETLKAAEILVKE-GFVVLPYC 130 (247)
T ss_dssp CTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--B-------S---TTT--B-HHHHHHHHHHHHHT-T-EEEEEE
T ss_pred cCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEe-------CC--CCCcCCChhHHHHHHHHHHHC-CCEEeecC
Confidence 34445566655 588999999997754 4677777521 11 124566666555555555432 45554443
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
. +| .-+|++|++.||..+---|-.-. ...|-.+...++.+.+..++|||..+||.++.|+..+++ .|||+
T Consensus 131 ~-----~D-~v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~da 200 (247)
T PF05690_consen 131 T-----DD-PVLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADA 200 (247)
T ss_dssp ------S--HHHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SE
T ss_pred C-----CC-HHHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCce
Confidence 1 22 45799999999998855443222 122346678889999888999999999999999999999 69999
Q ss_pred EEEehhhhh
Q 023070 164 VLSAESLLE 172 (287)
Q Consensus 164 VmiGR~~l~ 172 (287)
|++.++...
T Consensus 201 VLvNTAiA~ 209 (247)
T PF05690_consen 201 VLVNTAIAK 209 (247)
T ss_dssp EEESHHHHT
T ss_pred eehhhHHhc
Confidence 999988753
No 186
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.17 E-value=5.8e-05 Score=68.47 Aligned_cols=165 Identities=15% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCCH-----HHHHHHHH-HHcC-CCCEEEEec-cCCh-h---hhhcCcccccccC----ChHHHHHHHHH
Q 023070 7 EDRPLFVQFCANDP-----EILLNAAR-RVEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD----NLPLVKSLVEK 70 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~-----~~~~~aA~-~~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~----~~~~~~~iv~~ 70 (287)
...|+|+|+.-+.. +.+...++ .++. .+. |-||+ .|.. . ..-+.|+-+-.++ ..+...++.+.
T Consensus 41 ~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-v~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~ 119 (281)
T PRK06806 41 LNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVP-VAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKE 119 (281)
T ss_pred hCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHH
Confidence 35799999966432 33333333 2332 232 55664 2433 2 2234555443332 12233333333
Q ss_pred Hhh---ccCCcEEEEe-cCC-C---------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 71 LAL---NLNVPVSCKI-RVF-P---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 71 v~~---~~~~pv~vKi-R~g-~---------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
+++ ..++||-..+ .+| . +..+..+..+..++.|+|+|.+.-++.-+.+......+++.++++++.+
T Consensus 120 v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~ 199 (281)
T PRK06806 120 IVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV 199 (281)
T ss_pred HHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc
Confidence 332 3367766543 222 1 1123334333345679999987322222222222357899999999999
Q ss_pred CCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 137 RIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 137 ~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++|+++-| ||. .+++.++++ .|+++|-+.+++..+|
T Consensus 200 ~iPlV~hG~SGI~-~e~~~~~i~-~G~~kinv~T~i~~a~ 237 (281)
T PRK06806 200 HIPLVLHGGSGIS-PEDFKKCIQ-HGIRKINVATATFNSV 237 (281)
T ss_pred CCCEEEECCCCCC-HHHHHHHHH-cCCcEEEEhHHHHHHH
Confidence 99999999 995 688999988 6999999999998753
No 187
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.16 E-value=6.5e-05 Score=71.42 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHHHHHHcC-CCEEEEeccCCCCc-CCCCccccHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 93 IKYAKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 93 ~~~a~~l~~~G-~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~--------~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.+-|+.+++.| +|.|++. ....+. ...+...-+..+.++++.+ ++||++.|||.|++++..++. .|||
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-lGAd 243 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-LGAD 243 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-cCCc
Confidence 34466667777 6999986 222111 0111112234455555444 699999999999999999998 5999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+|++|+.++.-+.
T Consensus 244 ~V~~GT~flat~E 256 (418)
T cd04742 244 FIVTGSINQCTVE 256 (418)
T ss_pred EEeeccHHHhCcc
Confidence 9999999988665
No 188
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=98.16 E-value=1.4e-05 Score=70.54 Aligned_cols=134 Identities=18% Similarity=0.240 Sum_probs=86.4
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc---cCCcEEEEecCCCCh--------hh
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN---LNVPVSCKIRVFPNL--------QD 91 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~pv~vKiR~g~~~--------~~ 91 (287)
..++.+.++.|+|+|++-+. +|...-.+.+.+.+.+.++++. .++||.+-.-+ .+. +.
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence 45555677889999998642 2222222344455555555443 36787776322 111 13
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc----EEEecCC------CCHHHHHHHHHhcCc
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP----VLANGNV------RHMEDVQKCLEETGC 161 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip----Vi~nGgI------~s~~da~~~l~~~ga 161 (287)
....++.+.++|+|+|-..-... ......+...++++.+..++| |.++||| ++.+++.++++ .||
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~-aGa 222 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIE-AGA 222 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHH-TTH
T ss_pred HHHHHHHHHHhCCCEEEecCCcc----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHH-cCC
Confidence 46778888999999996642211 111124556677777767889 9999999 99999999998 599
Q ss_pred --cEEEEehhhhh
Q 023070 162 --EGVLSAESLLE 172 (287)
Q Consensus 162 --d~VmiGR~~l~ 172 (287)
-|++.||.++.
T Consensus 223 ~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 223 DRIGTSSGRNIWQ 235 (236)
T ss_dssp SEEEEEEHHHHHT
T ss_pred hhHHHHHHHHHHc
Confidence 99999998764
No 189
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=98.14 E-value=3e-05 Score=69.03 Aligned_cols=130 Identities=19% Similarity=0.192 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCC-CChh-hHHHHHH
Q 023070 22 ILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVF-PNLQ-DTIKYAK 97 (287)
Q Consensus 22 ~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g-~~~~-~~~~~a~ 97 (287)
...++...++.|+|.||+=+. +|..+..+.+.+.+-+.+|++.++ .|+-|=+-.+ .+.+ +....++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 344455577889999998542 455555688888888888887654 3333333333 2334 3667888
Q ss_pred HHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHHHhhC-------CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 98 MLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 98 ~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~-------~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+.++|+|+|-- +|.. ++.+..+.++.+++.+ ++-|=++|||+|.+++.++++. |+-
T Consensus 155 ~a~~aGADFVKTSTGf~-------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a--------g~~ 219 (257)
T PRK05283 155 IAIKAGADFIKTSTGKV-------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL--------ADE 219 (257)
T ss_pred HHHHhCCCEEEcCCCCC-------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH--------HHH
Confidence 999999999944 3321 1134555555554442 4778999999999999999984 555
Q ss_pred hhhCccc
Q 023070 170 LLENPAL 176 (287)
Q Consensus 170 ~l~nP~l 176 (287)
.+++-|+
T Consensus 220 ~lg~~~~ 226 (257)
T PRK05283 220 ILGADWA 226 (257)
T ss_pred HhChhhc
Confidence 5555443
No 190
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=98.14 E-value=6.4e-05 Score=65.45 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=98.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR 84 (287)
-..|+.+++.-||+-.....|. ..|+|+|-+|..|-....-. +.+..+...+.+....+...+. ..|-||..
T Consensus 84 v~iPvGvNVLrNd~vaA~~IA~--a~gA~FIRVN~~tg~~~tdq----Giieg~A~e~~r~r~~L~~~v~vlADv~VKHa 157 (263)
T COG0434 84 VSIPVGVNVLRNDAVAALAIAY--AVGADFIRVNVLTGAYATDQ----GIIEGNAAELARYRARLGSRVKVLADVHVKHA 157 (263)
T ss_pred ccccceeeeeccccHHHHHHHH--hcCCCEEEEEeeeceEeccc----ceecchHHHHHHHHHhccCCcEEEeecchhcc
Confidence 3579999999998754333222 23789999996544321111 2333344444444455542221 12334433
Q ss_pred CCCChhhHHHHHHH-HHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 85 VFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 85 ~g~~~~~~~~~a~~-l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
......+..+.++- ++..++|+++++|.+... ++|.+.++.+++..++||+++.|+ +++.+.++|+. |||
T Consensus 158 ~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~------~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~~--adG 228 (263)
T COG0434 158 VHLGNRSLEEAVKDTVERGLADAVIVTGSRTGS------PPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLKI--ADG 228 (263)
T ss_pred cccCCcCHHHHHHHHHHccCCCEEEEecccCCC------CCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHHH--cCc
Confidence 32222234444444 778889999999875431 688999999999999999999999 68999999985 999
Q ss_pred EEEehhhhhC
Q 023070 164 VLSAESLLEN 173 (287)
Q Consensus 164 VmiGR~~l~n 173 (287)
+++|+.+=.+
T Consensus 229 ~IvgT~lK~~ 238 (263)
T COG0434 229 VIVGTSLKKG 238 (263)
T ss_pred eEEEEEEccC
Confidence 9999866433
No 191
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.13 E-value=0.0001 Score=64.90 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHcC-C-------CCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 18 NDPEILLNAARRVEP-Y-------CDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~-g-------~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.+.++..+.|++..+ + -+.|.|-. |-| -.|+-|+-...+-.+.+.+. ++.|.--+
T Consensus 81 ~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~----------~~LlPD~~etl~Aae~Lv~e-GF~VlPY~----- 144 (267)
T CHL00162 81 QTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDP----------KYLLPDPIGTLKAAEFLVKK-GFTVLPYI----- 144 (267)
T ss_pred CCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCC----------cccCCChHHHHHHHHHHHHC-CCEEeecC-----
Confidence 577888888876533 2 45655542 211 35666776666665555432 44454332
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+| .-+|+++++.||..|---|-.-. ...|-.+...++.+.+..++||+..+||.+++|+..+++ .|||+|.+.+
T Consensus 145 ~~D-~v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nS 219 (267)
T CHL00162 145 NAD-PMLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNT 219 (267)
T ss_pred CCC-HHHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecc
Confidence 123 35799999999988844332221 122345677888999999999999999999999999999 6999999999
Q ss_pred hhhh
Q 023070 169 SLLE 172 (287)
Q Consensus 169 ~~l~ 172 (287)
|+..
T Consensus 220 aIak 223 (267)
T CHL00162 220 AVAQ 223 (267)
T ss_pred eeec
Confidence 9873
No 192
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=98.13 E-value=9.7e-05 Score=65.07 Aligned_cols=149 Identities=17% Similarity=0.315 Sum_probs=98.7
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
-+.++|...|+..+.+-.+.++. |+|.+-+-.- .+ .+..+..+-.++++++++.. ++|+.+|+-.
T Consensus 8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~Dim-------Dg----~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~-- 74 (228)
T PTZ00170 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVM-------DG----HFVPNLSFGPPVVKSLRKHLPNTFLDCHLMV-- 74 (228)
T ss_pred EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecc-------cC----ccCCCcCcCHHHHHHHHhcCCCCCEEEEECC--
Confidence 36789999999999999987754 7887555421 00 11112222246677777766 8999999752
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------c---------------------------------CCCC
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K---------------------------------DGKK 121 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------~---------------------------------~~~~ 121 (287)
.+...+++.+.++|++.++||+-.... . .+..
T Consensus 75 --~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~ 152 (228)
T PTZ00170 75 --SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFG 152 (228)
T ss_pred --CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCC
Confidence 456667788889999999999642111 0 0000
Q ss_pred cc----ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 122 FR----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 122 ~~----~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
|. ..++.++++++.. .+.|.+.|||+ ++.+..+.+ .|+|.+++||++...++
T Consensus 153 gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~~-aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 153 GQSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAAD-AGANVIVAGSSIFKAKD 209 (228)
T ss_pred CcEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHHH-cCCCEEEEchHHhCCCC
Confidence 00 0123455555543 46788999996 588888887 59999999999887665
No 193
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.11 E-value=0.00025 Score=61.50 Aligned_cols=150 Identities=21% Similarity=0.218 Sum_probs=92.2
Q ss_pred CCCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh--hh--cCccccc------ccCChHHHHHHHHHHhh--
Q 023070 7 EDRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI--AR--RGNYGAF------LMDNLPLVKSLVEKLAL-- 73 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~--~~--~~~~G~~------l~~~~~~~~~iv~~v~~-- 73 (287)
...|+++=+.+.++++..+.++. ++.|+..||+-+-.|... .+ ...|+.. -.-+++.+...+++=.+
T Consensus 8 ~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fi 87 (206)
T PRK09140 8 TKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLI 87 (206)
T ss_pred HhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEE
Confidence 35677777999999999999985 566899999986555411 10 1122211 01223332222221000
Q ss_pred --------------ccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--C
Q 023070 74 --------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 137 (287)
Q Consensus 74 --------------~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 137 (287)
..+.++..- .....+ +....+.|+|++.+.+- ....++.++.+++.. +
T Consensus 88 vsp~~~~~v~~~~~~~~~~~~~G------~~t~~E-~~~A~~~Gad~vk~Fpa---------~~~G~~~l~~l~~~~~~~ 151 (206)
T PRK09140 88 VTPNTDPEVIRRAVALGMVVMPG------VATPTE-AFAALRAGAQALKLFPA---------SQLGPAGIKALRAVLPPD 151 (206)
T ss_pred ECCCCCHHHHHHHHHCCCcEEcc------cCCHHH-HHHHHHcCCCEEEECCC---------CCCCHHHHHHHHhhcCCC
Confidence 011222111 011122 34455678888876321 123468899998877 4
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
+|+++.||| +++++.++++ .|+|+|.++++++...
T Consensus 152 ipvvaiGGI-~~~n~~~~~~-aGa~~vav~s~l~~~~ 186 (206)
T PRK09140 152 VPVFAVGGV-TPENLAPYLA-AGAAGFGLGSALYRPG 186 (206)
T ss_pred CeEEEECCC-CHHHHHHHHH-CCCeEEEEehHhcccc
Confidence 999999999 7899999998 6999999999997643
No 194
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.09 E-value=1.7e-05 Score=69.48 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~-~gad~VmiGR 168 (287)
.++.++|+.+.+.|++.++|-.-.... + .+.+++.++++.+. +||...|||+|.+|+++++.. .+||-|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~--~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--G--LGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--C--CcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 478899999999999999987554431 1 14688999999887 499999999999999998652 2699999999
Q ss_pred hhhhCccchhchh
Q 023070 169 SLLENPALFAGFR 181 (287)
Q Consensus 169 ~~l~nP~lf~~~~ 181 (287)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999988764
No 195
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.07 E-value=2.9e-05 Score=67.02 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=58.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+....+.|+|+|.+++........ ......++.++++++..+ +||++.||| +.+++.++++ .|+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~-~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE-AGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEeHHhhcC
Confidence 455567899999887544332111 111234889999988877 999999999 6899999998 699999999998765
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
++
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 54
No 196
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=0.00017 Score=62.51 Aligned_cols=153 Identities=14% Similarity=0.277 Sum_probs=104.4
Q ss_pred CCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
.++.++|...|...+.+-.+.++ +|+|.|-+-.. . +-+..+.-+--.+++++++.+..|+.|-+-.
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVM-------D----ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV-- 70 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVM-------D----GHFVPNITFGPPVVKALRKITDLPLDVHLMV-- 70 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEecc-------C----CCcCCCcccCHHHHHHHhhcCCCceEEEEec--
Confidence 46789999999999999998776 58988766521 0 1112222333567888888778999888644
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCC-----------------------C--------------------cCCCCc--
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------------------E--------------------KDGKKF-- 122 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~-----------------------~--------------------~~~~~~-- 122 (287)
++...+++.+.++|+++|++|.-... . ..++.|
T Consensus 71 --~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 71 --ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred --CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 45667888899999999999853100 0 011111
Q ss_pred --cccHHHHHHHHhhC----CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 123 --RADWNAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 123 --~~~~~~i~~i~~~~----~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+.-++-++++++.. ++-|-+-|||+ .+.+..+.+ .|||.++.|++++.+++.-.
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~-AGad~~VaGSalF~~~d~~~ 208 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAA-AGADVFVAGSALFGADDYKA 208 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHH-cCCCEEEEEEEEeCCccHHH
Confidence 12245556665543 24577999995 588887777 59999999999998888433
No 197
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=98.03 E-value=0.00027 Score=61.42 Aligned_cols=140 Identities=10% Similarity=0.206 Sum_probs=82.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.|+.+.++.++++.+.+.+ .+.|+|+|-+|.+- .+...+.++.+++. ++.+.+-+.. +
T Consensus 62 ~~~~v~l~v~d~~~~i~~~--~~~g~d~v~vh~~~-----------------~~~~~~~~~~~~~~-~~~~g~~~~~--~ 119 (220)
T PRK05581 62 LPLDVHLMVENPDRYVPDF--AKAGADIITFHVEA-----------------SEHIHRLLQLIKSA-GIKAGLVLNP--A 119 (220)
T ss_pred CcEEEEeeeCCHHHHHHHH--HHcCCCEEEEeecc-----------------chhHHHHHHHHHHc-CCEEEEEECC--C
Confidence 4677899999999887655 36799999999541 12223344444432 3444433311 1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH---HHHHHHHhhCC-----CcEEEecCCCCHHHHHHHHHhcC
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW---NAIKAVKNALR-----IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~---~~i~~i~~~~~-----ipVi~nGgI~s~~da~~~l~~~g 160 (287)
+..+.++.+. .+++++.+-+........ ..+| +.++++++..+ .+|.+.|||+. +++.++++ .|
T Consensus 120 --t~~e~~~~~~-~~~d~i~~~~~~~g~tg~---~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~-~G 191 (220)
T PRK05581 120 --TPLEPLEDVL-DLLDLVLLMSVNPGFGGQ---KFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAE-AG 191 (220)
T ss_pred --CCHHHHHHHH-hhCCEEEEEEECCCCCcc---cccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHH-cC
Confidence 1123344432 347777664432211111 2233 34444444322 33567899987 89999887 69
Q ss_pred ccEEEEehhhhhCccchh
Q 023070 161 CEGVLSAESLLENPALFA 178 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~ 178 (287)
+|+|.+|++++.+|+...
T Consensus 192 aD~vvvgSai~~~~d~~~ 209 (220)
T PRK05581 192 ADVFVAGSAVFGAPDYKE 209 (220)
T ss_pred CCEEEEChhhhCCCCHHH
Confidence 999999999998777544
No 198
>PRK08005 epimerase; Validated
Probab=98.02 E-value=0.0003 Score=61.09 Aligned_cols=148 Identities=11% Similarity=0.216 Sum_probs=96.4
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+.++|.+.|+..+.+-.+.++ .|+|.+-+-.- .+. +..+.-+--++++++++.+++|+.|-+-.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~----FVPN~tfG~~~i~~l~~~t~~~~DvHLMv---- 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTS----FINNITFGMKTIQAVAQQTRHPLSFHLMV---- 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCC----cCCccccCHHHHHHHHhcCCCCeEEEecc----
Confidence 568899999999999888665 48887555421 111 11222233456777777777887776533
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCcc---
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKFR--- 123 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~~--- 123 (287)
.+...+++.+.++|++.|++|.-.... ..++.|.
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 355667888889999999998531100 0111111
Q ss_pred -ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 -ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 -~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.-++.++++++.. ...|.+-|||+ .+.+.++.+ .|||.+.+|++++.+++
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~-aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 1234455555443 34689999996 688887887 69999999999876655
No 199
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.01 E-value=0.00019 Score=61.26 Aligned_cols=144 Identities=19% Similarity=0.259 Sum_probs=93.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCCh-----hhhhcCcc-----cccccCChHHHHH----------
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQ-----RIARRGNY-----GAFLMDNLPLVKS---------- 66 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~-----~~~~~~~~-----G~~l~~~~~~~~~---------- 66 (287)
..|+++=+.+.+++++.+.++. ++.|++.|++.+-.|. ...++ .| |+...-+.+.+..
T Consensus 3 ~~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~-~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRK-EFPEALIGAGTVLTPEQADAAIAAGAQFIV 81 (190)
T ss_pred cCcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHH-HCCCCEEEEEeCCCHHHHHHHHHcCCCEEE
Confidence 4577777899999999999885 5668999999765442 11111 12 2222223333322
Q ss_pred -------HHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 67 -------LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 67 -------iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+++..+. .+.++.+-+ . +. +-+..+.+.|+|+|-+.... +...++++.+++.. ++
T Consensus 82 ~p~~~~~~~~~~~~-~~~~~i~gv----~--t~-~e~~~A~~~Gad~i~~~p~~---------~~g~~~~~~l~~~~~~~ 144 (190)
T cd00452 82 SPGLDPEVVKAANR-AGIPLLPGV----A--TP-TEIMQALELGADIVKLFPAE---------AVGPAYIKALKGPFPQV 144 (190)
T ss_pred cCCCCHHHHHHHHH-cCCcEECCc----C--CH-HHHHHHHHCCCCEEEEcCCc---------ccCHHHHHHHHhhCCCC
Confidence 2222221 234443322 1 22 22455568999999884311 12356788887765 59
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
|+++.||| +++++.++++ .|+|+|.++..++
T Consensus 145 p~~a~GGI-~~~n~~~~~~-~G~~~v~v~s~i~ 175 (190)
T cd00452 145 RFMPTGGV-SLDNAAEWLA-AGVVAVGGGSLLP 175 (190)
T ss_pred eEEEeCCC-CHHHHHHHHH-CCCEEEEEchhcc
Confidence 99999999 8999999998 5899999999887
No 200
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.00 E-value=0.00013 Score=65.03 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=45.3
Q ss_pred cccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 123 RADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 123 ~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
..|++...++...+ ++.+|+.+||.+++|+..+.. .|+|+|.||+++|..|+.-..+
T Consensus 193 ~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~-~G~davLVGe~lm~~~d~~~~~ 251 (254)
T PF00218_consen 193 EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLAR-AGADAVLVGEALMRSPDPGEAL 251 (254)
T ss_dssp CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCT-TT-SEEEESHHHHTSSSHHHHH
T ss_pred ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHH
Confidence 46677777777765 478999999999999998887 6999999999999998865543
No 201
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.99 E-value=0.0003 Score=66.28 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=97.6
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+.++ ..+.||+.|.|..|-+ ..++.-.+.++++++.+ ++++.+...-+|+.+++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 7888888776 5567999999953210 11455678888998877 57888888888999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s-~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++- +.- .+.+++..+++++.+++||.+...+.+ ++++.++++...+|.|.+
T Consensus 209 ~~~l~~~~l~~iE-------eP~---~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYE-------DPL---REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEe-------CCC---CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9999999877662 111 134678888999999999988888999 999999999877888876
No 202
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.98 E-value=0.00037 Score=61.15 Aligned_cols=146 Identities=14% Similarity=0.269 Sum_probs=97.3
Q ss_pred EEEEecCCCHHHHHHHHHHHcC-CCCEEEEec--cCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCC
Q 023070 11 LFVQFCANDPEILLNAARRVEP-YCDYVDINL--GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVF 86 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~--gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g 86 (287)
+.++|...|+..+.+-.+.++. |+|.+-+-. |.=+ .+.-+--++++++++. +++|+.|-+-.
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FV-------------PN~tfg~~~i~~lr~~~~~~~~dvHLMv- 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYV-------------PNLTIGPMVCQALRKHGITAPIDVHLMV- 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccC-------------CCcccCHHHHHHHHhhCCCCCEEEEecc-
Confidence 6789999999999999987754 888755542 2111 1222334577888876 58888877643
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCcc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKFR 123 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~~ 123 (287)
.+...+++.+.++|++.|++|.-.... ..++.|.
T Consensus 72 ---~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 72 ---EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred ---CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 356667888889999999998531100 0111111
Q ss_pred ----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 ----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 ----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..++-++++++. .++.|-+.|||+ .+.+..+.+ .|||.+++|+++...++
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~-aGaDi~V~GSaiF~~~d 207 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAA-AGADTFVAGSAIFNAPD 207 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEChhhhCCCC
Confidence 123445555543 246689999996 688888887 69999999999876555
No 203
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.98 E-value=0.00053 Score=64.88 Aligned_cols=140 Identities=19% Similarity=0.293 Sum_probs=96.9
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+.|--.|+..+. +-...+.|+|.+.+|... ..+.+.+.++.+++. ++-+.+.+ +
T Consensus 226 ~~~I~~DLK~~Di~~~v-v~~~a~aGAD~vTVH~ea----------------~~~ti~~ai~~akk~-GikvgVD~-l-- 284 (391)
T PRK13307 226 DAFIVADLKTLDTGNLE-ARMAADATADAVVISGLA----------------PISTIEKAIHEAQKT-GIYSILDM-L-- 284 (391)
T ss_pred CCeEEEEecccChhhHH-HHHHHhcCCCEEEEeccC----------------CHHHHHHHHHHHHHc-CCEEEEEE-c--
Confidence 46799999999999886 223557799999999531 233456666666654 44444421 1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+..+..+.++.+ ..++|.+.+|.....+.. ..-|+.++++++. .+++|.+.|||. .+++.++++ .|+|.+.+
T Consensus 285 np~tp~e~i~~l-~~~vD~Vllht~vdp~~~----~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~-aGADivVV 357 (391)
T PRK13307 285 NVEDPVKLLESL-KVKPDVVELHRGIDEEGT----EHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALK-AGADILVV 357 (391)
T ss_pred CCCCHHHHHHHh-hCCCCEEEEccccCCCcc----cchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHH-cCCCEEEE
Confidence 123445566666 678999999942222211 2456778888774 478999999997 899988887 69999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
||+++..++
T Consensus 358 GsaIf~a~D 366 (391)
T PRK13307 358 GRAITKSKD 366 (391)
T ss_pred eHHHhCCCC
Confidence 999876555
No 204
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.98 E-value=3.7e-05 Score=66.72 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
.+-+..+++.|+|+|.+.......+.....+.-|+.++.+++...+|+++-||| +++.+.++++ +|+|||.+-|+++.
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga~gVAvvsai~~ 191 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCCCeEEehhHhhc
Confidence 355667788999999986655444333334567899999998888999999999 5799999998 69999999999998
Q ss_pred Cccchhc
Q 023070 173 NPALFAG 179 (287)
Q Consensus 173 nP~lf~~ 179 (287)
.++....
T Consensus 192 a~d~~~a 198 (211)
T COG0352 192 AADPAAA 198 (211)
T ss_pred CCCHHHH
Confidence 7775543
No 205
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.97 E-value=0.0002 Score=67.12 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=103.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-..+...+++++.+.++ .++.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...
T Consensus 130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 345555665567777765554 667799888876541 23455567788888877 477888888
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++.++++.+++.++.+|- +.- .+.|++..+++++.+++||.+...+.++.++.++++...+|.|
T Consensus 195 ~~~~~~~A~~~~~~l~~~~i~~iE-------eP~---~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i 264 (355)
T cd03321 195 QSLTVPEAIERGQALDQEGLTWIE-------EPT---LQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLV 264 (355)
T ss_pred CCcCHHHHHHHHHHHHcCCCCEEE-------CCC---CCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeE
Confidence 789999999999999999988873 111 1357899999999999999998899999999999998778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 265 ~~ 266 (355)
T cd03321 265 MP 266 (355)
T ss_pred ec
Confidence 76
No 206
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.97 E-value=0.00017 Score=62.25 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 17 ANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
..+++.+.+.+. +.++|+|.||-. .+++ .++.+++..+.++...+..... ...+.
T Consensus 59 n~~~~~i~~ia~--~~~~d~Vqlhg~----------------e~~~----~~~~l~~~~~~~~i~~i~~~~~--~~~~~- 113 (203)
T cd00405 59 NEDLEEILEIAE--ELGLDVVQLHGD----------------ESPE----YCAQLRARLGLPVIKAIRVKDE--EDLEK- 113 (203)
T ss_pred CCCHHHHHHHHH--hcCCCEEEECCC----------------CCHH----HHHHHHhhcCCcEEEEEecCCh--hhHHH-
Confidence 445555555543 236788888721 1222 3444454445666544444322 11222
Q ss_pred HHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
......|+|++.+...+.....+...+.+|+.+++++ .++||++.||| +++.+.++++...++||-+++++...|..
T Consensus 114 ~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 114 AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 2334578999988655543221112257999988876 67999999999 89999999996449999999999877764
No 207
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.94 E-value=0.00031 Score=62.32 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=82.0
Q ss_pred HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----------
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F---------- 86 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g---------- 86 (287)
..+.|+++|.++. -...||+++ +.++.+++.+++||-.|==+ |
T Consensus 70 y~~~GA~aISVlT-------e~~~F~Gs~--------~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~ 134 (247)
T PRK13957 70 YETLGASAISVLT-------DQSYFGGSL--------EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRI 134 (247)
T ss_pred HHHCCCcEEEEEc-------CCCcCCCCH--------HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhh
Confidence 4456888887762 233355543 33455566667898888322 1
Q ss_pred CChhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCH
Q 023070 87 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHM 149 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~ 149 (287)
.+.++..++.+...+.|.+.+ -||...- +.+.-.+...|.+...++...+ +..+|+.+||.|+
T Consensus 135 L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~ 214 (247)
T PRK13957 135 LTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIESR 214 (247)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 112233444555555555444 3442100 0011112245677777777765 4678899999999
Q ss_pred HHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 150 EDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 150 ~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+|+.++.. . +|+|.||.++|..++.-..+
T Consensus 215 ~d~~~l~~-~-~davLvG~~lm~~~d~~~~~ 243 (247)
T PRK13957 215 SDLDKFRK-L-VDAALIGTYFMEKKDIRKAW 243 (247)
T ss_pred HHHHHHHH-h-CCEEEECHHHhCCCCHHHHH
Confidence 99998775 4 99999999999988865433
No 208
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.92 E-value=0.00021 Score=66.43 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc----ccHHHHHHHHhhC
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL 136 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~ 136 (287)
++...+.+..+++..++||.++++. .+.++..++++.++++|+++|.+|-..........+. .-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 4566677777777778999999965 4557788999999999999999964221111111111 1357788899888
Q ss_pred CCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 137 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 137 ~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999976 556677788888888999998663
No 209
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.91 E-value=0.00062 Score=61.84 Aligned_cols=163 Identities=17% Similarity=0.258 Sum_probs=93.6
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHHHcCCCC--EEEEec-cCCh-h---hhhcCcccccccC----ChHHHHHHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARRVEPYCD--YVDINL-GCPQ-R---IARRGNYGAFLMD----NLPLVKSLVE 69 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~~~~g~d--~IdiN~-gcP~-~---~~~~~~~G~~l~~----~~~~~~~iv~ 69 (287)
...|+|+|+.-+. .+.+...++.+...++ -|-+|+ .|+. . ..-+.++.+-.++ ..+...+..+
T Consensus 39 ~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~ 118 (282)
T TIGR01859 39 ENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTK 118 (282)
T ss_pred hCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHH
Confidence 3689999986532 3345555543322233 356663 4543 2 2334555433322 1122222333
Q ss_pred HHh---hccCCcEEEEecC--C---------CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 70 KLA---LNLNVPVSCKIRV--F---------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 70 ~v~---~~~~~pv~vKiR~--g---------~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
.+. ...+++|-..+.. | ....+..+..+..++.|+|+|.+.-++.-+.+......+++.++++++.
T Consensus 119 ~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~ 198 (282)
T TIGR01859 119 KVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL 198 (282)
T ss_pred HHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH
Confidence 332 2335666655543 1 0111333333333458999998742222211222235789999999999
Q ss_pred CCCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 136 LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 136 ~~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+++|+++-| ||. .+++.++++ .|+++|-+++.+.
T Consensus 199 ~~iPlv~hGgSGi~-~e~i~~~i~-~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 199 TNIPLVLHGASGIP-EEQIKKAIK-LGIAKINIDTDCR 234 (282)
T ss_pred hCCCEEEECCCCCC-HHHHHHHHH-cCCCEEEECcHHH
Confidence 999999999 995 588999998 5999999998775
No 210
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=97.88 E-value=0.00051 Score=65.84 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHHHHHcC-CCEEEEeccCCCCc-CCCCccccHHHHHHHHhhC--------CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 96 AKMLEDAG-CSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 96 a~~l~~~G-~~~I~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~--------~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
|+.+++.| +|.|++. ....+. ...+...-++.+.++++.+ ++||++.|||.|++++..+|. .|||+|+
T Consensus 174 A~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAdgV~ 251 (444)
T TIGR02814 174 AELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGADFIV 251 (444)
T ss_pred HHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCcEEE
Confidence 45566666 5888884 221111 0111112233444444444 799999999999999999998 5999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+|+.++.-+.
T Consensus 252 ~GT~flat~E 261 (444)
T TIGR02814 252 TGSVNQCTVE 261 (444)
T ss_pred eccHHHhCcc
Confidence 9999987655
No 211
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.87 E-value=0.00011 Score=68.43 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=61.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+..+.+.|+|+|.+.+...........+..++.++.+++..++||++-|||. ++++.+++. .|+++|.++++++..++
T Consensus 253 ~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~-~Ga~gVAvisaI~~a~d 330 (347)
T PRK02615 253 MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQ-AGAKRVAVVRAIMGAED 330 (347)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHH-cCCcEEEEeHHHhCCCC
Confidence 4556678999999876554432222224678999999988899999999995 899998887 69999999999986544
No 212
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=97.84 E-value=0.0003 Score=61.24 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=90.2
Q ss_pred HHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC---------------
Q 023070 23 LLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF--------------- 86 (287)
Q Consensus 23 ~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g--------------- 86 (287)
..+-++ +++.|-|+|-| |++.--+.+.+.++++++++..++|+.+=-...
T Consensus 30 ~~ei~~~~~~~GTDaImI--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~~aDavff~sv 95 (240)
T COG1646 30 ADEIAEAAAEAGTDAIMI--------------GGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISPYADAVFFPSV 95 (240)
T ss_pred cHHHHHHHHHcCCCEEEE--------------CCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCccCCeEEEEEE
Confidence 344444 34568999988 555556778899999999988899988754320
Q ss_pred -------CChhhHHHHHHHHHHcCC-----CEEEEe--------c------cCCCC---------------------cCC
Q 023070 87 -------PNLQDTIKYAKMLEDAGC-----SLLAVH--------G------RTRDE---------------------KDG 119 (287)
Q Consensus 87 -------~~~~~~~~~a~~l~~~G~-----~~I~vh--------~------rt~~~---------------------~~~ 119 (287)
|-...-.+-++.+.+.+. .++++- + ++... ..+
T Consensus 96 LNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEagsg 175 (240)
T COG1646 96 LNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEAGSG 175 (240)
T ss_pred ecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEecCC
Confidence 101111233344444432 222221 1 11100 012
Q ss_pred CCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 120 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 120 ~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
.+.|...+.++++++.. |+|+.|||+|++.+.++.+ .|||.++.|..+..+|+-+.++
T Consensus 176 a~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~-agAD~IVtG~iiee~~~~~~~~ 233 (240)
T COG1646 176 AGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAE-AGADTIVTGTIIEEDPDKALET 233 (240)
T ss_pred CCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHH-cCCCEEEECceeecCHHHHHHH
Confidence 23355667777776654 9999999999999999998 5999999999999999765543
No 213
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.81 E-value=0.00018 Score=61.53 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=56.9
Q ss_pred HHHHHcCCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 97 KMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 97 ~~l~~~G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
..+.+.|+|++.+......... ....+..++.++++++.. ++||++.||| +++++.++++ .|+|+|.+|++++..+
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 3466789999987544332211 111134688899888765 5999999999 5899998887 6999999999998654
Q ss_pred c
Q 023070 175 A 175 (287)
Q Consensus 175 ~ 175 (287)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 4
No 214
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.79 E-value=0.0007 Score=63.42 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=106.6
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
...|+-..+.+.+++.+.+-++ ..+.||..+.+..|-+..+. + --.+++.-.+.++++++.+ ++.+.+..
T Consensus 111 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~--~-----~~~~~~~D~~~i~avr~~~g~~~~l~vDa 183 (352)
T cd03325 111 DRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWI--D-----TSKKVDAAVERVAALREAVGPDIDIGVDF 183 (352)
T ss_pred ceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccC--C-----CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 3456666666778888765554 56779999999876321100 0 0023556677888888876 57788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+.+| ++.- .+.|++..+++++.+.+||.+.=.+.+++++..+++...+|.
T Consensus 184 N~~~~~~~A~~~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~ 253 (352)
T cd03325 184 HGRVSKPMAKDLAKELEPYRLLFI-------EEPV---LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDI 253 (352)
T ss_pred CCCCCHHHHHHHHHhccccCCcEE-------ECCC---CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCE
Confidence 878999999999999999998877 2211 135789999999999999999888999999999998777888
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
|.+-
T Consensus 254 v~~d 257 (352)
T cd03325 254 IQPD 257 (352)
T ss_pred EecC
Confidence 8763
No 215
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.78 E-value=0.00094 Score=58.05 Aligned_cols=134 Identities=17% Similarity=0.240 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHcC--CCCEEEEec-cCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAARRVEP--YCDYVDINL-GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~~~~~--g~d~IdiN~-gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~ 93 (287)
..++++....|++..+ +.|.|.|-. +++. .|+-|+-...+-.+.+.+. ++.|..- ..+| .
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlPY-----~~dD-~ 141 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLPY-----TTDD-P 141 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEeec-----cCCC-H
Confidence 3578899999987754 457777763 3322 4555555444444444322 3444332 2233 3
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
-+|+++++.||..+-=-+-.- ...-|..+-..++.+.+..++|||+.-||.++.|+...++ .|||+|++-++.-
T Consensus 142 v~arrLee~GcaavMPl~aPI---GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA 215 (262)
T COG2022 142 VLARRLEEAGCAAVMPLGAPI---GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIA 215 (262)
T ss_pred HHHHHHHhcCceEeccccccc---cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhh
Confidence 479999999998772211111 1122345667788888888999999999999999999999 6999999988764
No 216
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.77 E-value=0.0013 Score=58.58 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=98.4
Q ss_pred CCCEEEEe--cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEE
Q 023070 8 DRPLFVQF--CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi--~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vK 82 (287)
..|+++-+ +..+++.+.+.++ +++.|+++|.|-=+..- .+.+..|..-+-.++...+.+++++++.+ .++.|=
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~--k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~Ii 146 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGP--KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVII 146 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC--ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEE
Confidence 46777654 3346778888776 45679999999644321 12233344445567777777777766543 244444
Q ss_pred ec-----CC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec--CC--CCHHHH
Q 023070 83 IR-----VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NV--RHMEDV 152 (287)
Q Consensus 83 iR-----~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG--gI--~s~~da 152 (287)
-| .+ ...+++++-++...++|+|.+-+++.+ +.+.++++.+.++.||.++- +- .+.+++
T Consensus 147 ARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l 215 (243)
T cd00377 147 ARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAEL 215 (243)
T ss_pred EEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHH
Confidence 44 23 467889999999999999999998553 55888999999999988763 22 244444
Q ss_pred HHHHHhcCccEEEEehhhh
Q 023070 153 QKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~l 171 (287)
. +.|+..|.+|-.++
T Consensus 216 ~----~lG~~~v~~~~~~~ 230 (243)
T cd00377 216 A----ELGVRRVSYGLALL 230 (243)
T ss_pred H----HCCCeEEEEChHHH
Confidence 3 36999999886543
No 217
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.76 E-value=0.00076 Score=63.19 Aligned_cols=122 Identities=12% Similarity=0.142 Sum_probs=96.0
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+-++ .++.||..+.+..| .+++.-.+.++++++.+ ++.+.+...-+|+..+++++
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~ 201 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALAL 201 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHH
Confidence 6776665554 66789999999754 13455677888888877 47788888888999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++ ++.- .+.|++..+++++. +++||.+.=.+.+..++.++++...+|.|++
T Consensus 202 ~~~l~~~~~~~~-------EeP~---~~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 202 ARAFADEGVTWF-------EEPV---SSDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHhCcchh-------hCCC---ChhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 999999888665 2211 13578899999999 8899999888999999999999777888875
No 218
>PRK06801 hypothetical protein; Provisional
Probab=97.75 E-value=0.0012 Score=60.00 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=94.1
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHH-HcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAARR-VEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~~-~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+. .+.+...++. ++. .+. |-||+ .|.. ...-+.||.|-..+ +.+...+
T Consensus 41 ~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-V~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~ 119 (286)
T PRK06801 41 ERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIP-VVLNLDHGLHFEAVVRALRLGFSSVMFDGSTLEYEENVRQTRE 119 (286)
T ss_pred HCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3579999997643 3555555553 332 332 55664 2332 12234555544432 2233333
Q ss_pred HHHHHhhccCCcEEEEecC-C-CC------------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-PN------------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~~------------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
+++..+ ..+++|-.-+.. | .+ ..+..+..+.+++.|+|++.+.=.+..+.+......+++.++++
T Consensus 120 v~~~a~-~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i 198 (286)
T PRK06801 120 VVKMCH-AVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAI 198 (286)
T ss_pred HHHHHH-HcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHH
Confidence 433332 235555433322 1 00 11223333334479999998854444333332224799999999
Q ss_pred HhhCCCcEEEecC--CCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 133 KNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 133 ~~~~~ipVi~nGg--I~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.+++|++.-|| |. .+++.++++ .|++.|-+++.+.
T Consensus 199 ~~~~~~PLVlHGGSgi~-~e~~~~~i~-~Gi~KINv~T~~~ 237 (286)
T PRK06801 199 HQQTGLPLVLHGGSGIS-DADFRRAIE-LGIHKINFYTGMS 237 (286)
T ss_pred HHhcCCCEEEECCCCCC-HHHHHHHHH-cCCcEEEehhHHH
Confidence 9999999999998 86 588888888 6999999998774
No 219
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.73 E-value=0.00026 Score=62.07 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+....+.|+|+|.+.+-... ......+..++.++++++.+++||++-||| +++++.++++ .|++||.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~-tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGAD-NKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-TGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEECCCCCC-CCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-hCCCEEEEhHHhhCCCC
Confidence 34456799999999765322 111122345778888888889999999999 7899999998 69999999999986555
Q ss_pred c
Q 023070 176 L 176 (287)
Q Consensus 176 l 176 (287)
.
T Consensus 201 p 201 (221)
T PRK06512 201 P 201 (221)
T ss_pred H
Confidence 3
No 220
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.73 E-value=0.00016 Score=61.27 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=54.9
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.+.+.|+|++.+.+-..........+..|+.+.++++..++||++-||| +++++.++.+ .|++||.+-+++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 667778999999998765443322223567899999999999999999999 6899998887 699999988763
No 221
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.72 E-value=0.0018 Score=59.40 Aligned_cols=134 Identities=23% Similarity=0.233 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHcC--CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH
Q 023070 18 NDPEILLNAARRVEP--YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~--g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 95 (287)
.+.++..+.|++..+ +-+.|.|-.-- + --.++.|+..+.+-.+.+.+. ++-+.+-+ .+....
T Consensus 147 ~ta~eAv~~a~lare~~~~~~iKlEvi~-------e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc------~~d~~~ 210 (326)
T PRK11840 147 YTAEEAVRTLRLAREAGGWDLVKLEVLG-------D--AKTLYPDMVETLKATEILVKE-GFQVMVYC------SDDPIA 210 (326)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEcC-------C--CCCcccCHHHHHHHHHHHHHC-CCEEEEEe------CCCHHH
Confidence 578888888887654 45776665311 1 123445555544444444221 33332222 122456
Q ss_pred HHHHHHcCCCEEEEec-cCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 96 AKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
++++++.|+ +.|-+ ...-+ ...+-.+.+.++.+.+..++||+..+||.+++|+..+++ .|||+|.+.+|...
T Consensus 211 a~~l~~~g~--~avmPl~~pIG--sg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~ 283 (326)
T PRK11840 211 AKRLEDAGA--VAVMPLGAPIG--SGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAE 283 (326)
T ss_pred HHHHHhcCC--EEEeecccccc--CCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceecc
Confidence 889999999 43432 11111 111234778899999989999999999999999999999 69999999998864
No 222
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=9.6e-06 Score=75.66 Aligned_cols=133 Identities=25% Similarity=0.356 Sum_probs=107.8
Q ss_pred EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC
Q 023070 37 VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 116 (287)
Q Consensus 37 IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~ 116 (287)
.++|++||.......+.+...+..+..+..+.+..++..+.|+ .|.|+-.+..++.++++.+++.+ .+.+|+|....
T Consensus 290 ~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~ 366 (477)
T KOG2334|consen 290 RGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFD 366 (477)
T ss_pred hhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccc
Confidence 5677999998888887788888888888899998888888888 89999888889999999999998 56778776444
Q ss_pred cCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 117 ~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+..+ ++.|+.++.+.....+|+++||.+....+- . .+++..||..++...+-.+|.
T Consensus 367 r~~~--pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~ 422 (477)
T KOG2334|consen 367 RPTD--PAKWDTPKMVLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWS 422 (477)
T ss_pred ccCC--CcCCCCHHHHHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccC
Confidence 4344 678888888877788999999999866653 2 357888999999987777665
No 223
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.68 E-value=0.0032 Score=55.19 Aligned_cols=107 Identities=23% Similarity=0.223 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC-C--CCcccc-HHHHHHHHhhC-C
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-G--KKFRAD-WNAIKAVKNAL-R 137 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~-~--~~~~~~-~~~i~~i~~~~-~ 137 (287)
.+.+.++...+ .++.+.+=+ + + .+-++.+.+.|.++|.+-++...+.. . ...+.. -+.++.+++.. +
T Consensus 102 e~~~~v~~a~~-~Gl~~I~~v--~-~----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~ 173 (223)
T PRK04302 102 DIEAVVERAKK-LGLESVVCV--N-N----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPD 173 (223)
T ss_pred HHHHHHHHHHH-CCCeEEEEc--C-C----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCC
Confidence 35556665544 354444421 1 1 12344566788888877554221110 0 000111 23345566543 6
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 178 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~ 178 (287)
+||++.|||++++++..+++ .|+|||.+|++++.-+++..
T Consensus 174 ~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa~l~~~~~~~ 213 (223)
T PRK04302 174 VKVLCGAGISTGEDVKAALE-LGADGVLLASGVVKAKDPEA 213 (223)
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCCEEEEehHHhCCcCHHH
Confidence 99999999999999999887 59999999999997766544
No 224
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.68 E-value=0.0003 Score=75.28 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-----CccccHHH-HHHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADWNA-IKAV 132 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-----~~~~~~~~-i~~i 132 (287)
.++-+.++|..++... +.||+||+-.+.... .++.-+.++|+|.|+|.|......... ....-|+. +.++
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg---~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~ 1055 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVG---TIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAET 1055 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCcc---HHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHH
Confidence 4566888888888876 689999987653332 244456789999999987644321100 00122333 3333
Q ss_pred Hhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+. + ++.+++.||++|+.|+.+++. .|||.|.+||++|---.
T Consensus 1056 ~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a-LGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1056 HQALVANGLRHKIRLQVDGGLKTGLDVIKAAI-LGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH-cCCcccccchHHHHHcC
Confidence 222 2 489999999999999999998 69999999999875433
No 225
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.67 E-value=0.0015 Score=59.61 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=96.4
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHH-HcC-CCC-EEEEec-cCChh---hhhcCcccccccC----ChHHHHHHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARR-VEP-YCD-YVDINL-GCPQR---IARRGNYGAFLMD----NLPLVKSLVE 69 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~-~~~-g~d-~IdiN~-gcP~~---~~~~~~~G~~l~~----~~~~~~~iv~ 69 (287)
...|+|+|+.-.. .+.+...++. ++. ++. -|-||+ .|... ..-+.++.+-.++ ..+...++.+
T Consensus 41 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~ 120 (293)
T PRK07315 41 KKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAK 120 (293)
T ss_pred HCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHH
Confidence 3679999996532 3444444442 332 222 266665 34432 2334555544433 1222333333
Q ss_pred HHhh---ccCCcEEEEecC--C-C------ChhhHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHH
Q 023070 70 KLAL---NLNVPVSCKIRV--F-P------NLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 70 ~v~~---~~~~pv~vKiR~--g-~------~~~~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i 132 (287)
++++ ..+++|-..+.. | . +.-...+-|+.+.+.|+|+|.+ ||..... +...+++.++++
T Consensus 121 ~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~----~k~l~~e~L~~i 196 (293)
T PRK07315 121 EVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPEN----WEGLDLDHLEKL 196 (293)
T ss_pred HHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCC----CCcCCHHHHHHH
Confidence 3332 346777655432 2 1 1102234455566899999966 4443321 114789999999
Q ss_pred HhhC-CCcEEEecC--CCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 133 KNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 133 ~~~~-~ipVi~nGg--I~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++.+ ++|+++-|| |. .+++.++++ .|++.|-+++.+..+
T Consensus 197 ~~~~~~iPlVlhGGSGi~-~e~~~~~i~-~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 197 TEAVPGFPIVLHGGSGIP-DDQIQEAIK-LGVAKVNVNTECQIA 238 (293)
T ss_pred HHhccCCCEEEECCCCCC-HHHHHHHHH-cCCCEEEEccHHHHH
Confidence 9998 599999999 85 588999998 699999999998863
No 226
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.67 E-value=0.0016 Score=62.36 Aligned_cols=124 Identities=13% Similarity=0.076 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
+.+++++.+-++ .++.||..+.+..| .+++.-.+.++++++.+ ++.+.+...-+|+.+++.
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 557787766555 66789999999764 24555677888888877 467777777789999999
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++.++.+| ++.- .+.|++..+++++.+ ++||.+.-.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~i-------EEP~---~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWI-------EEPT---SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEE-------ECCC---CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 99999999998776 2211 135788889999887 699988778999999999998777888875
No 227
>PRK14017 galactonate dehydratase; Provisional
Probab=97.67 E-value=0.0015 Score=61.95 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=106.5
Q ss_pred CCCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 7 EDRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
+..|+...+++.+|+++.+-++ ..+.||..+.+..|-+.. . .++ ..+++.-.+.++++++.+ ++.+.+..
T Consensus 112 ~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~--~---~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDa 184 (382)
T PRK14017 112 DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQ--Y---IDS--PRKVDAAVARVAAVREAVGPEIGIGVDF 184 (382)
T ss_pred ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCcc--c---ccc--HHHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 3446666666778998865554 667799999997531110 0 000 123556678888888877 47788888
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
+-+|+.+++.++++.+++.|+.+| ++.- .+.|++..+++++.+.+||.+.=.+.++.++..+++...+|.
T Consensus 185 N~~w~~~~A~~~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~ 254 (382)
T PRK14017 185 HGRVHKPMAKVLAKELEPYRPMFI-------EEPV---LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDI 254 (382)
T ss_pred CCCCCHHHHHHHHHhhcccCCCeE-------ECCC---CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCe
Confidence 778999999999999999988877 2211 135788899999999999999889999999999999877888
Q ss_pred EEEe
Q 023070 164 VLSA 167 (287)
Q Consensus 164 VmiG 167 (287)
+.+-
T Consensus 255 v~~d 258 (382)
T PRK14017 255 IQPD 258 (382)
T ss_pred EecC
Confidence 8764
No 228
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.67 E-value=0.0017 Score=56.60 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh-----hhhcC-------cccccccCChHHHHHHHHH----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR-----IARRG-------NYGAFLMDNLPLVKSLVEK---- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~-----~~~~~-------~~G~~l~~~~~~~~~iv~~---- 70 (287)
..|++.=|.+.++++....++. ++.|+..+||-+-.|.. ..++. .-|+.-.-+++.+.+.+++
T Consensus 12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F 91 (213)
T PRK06552 12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF 91 (213)
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence 4678888999999999999995 56689999999876651 11111 0122222344444333322
Q ss_pred -------------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC
Q 023070 71 -------------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 137 (287)
Q Consensus 71 -------------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 137 (287)
.+ ..++|+.- |- ....+ +....++|+|+|-+.+.. ....++++.++...+
T Consensus 92 ivsP~~~~~v~~~~~-~~~i~~iP----G~--~T~~E-~~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p 154 (213)
T PRK06552 92 IVSPSFNRETAKICN-LYQIPYLP----GC--MTVTE-IVTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLP 154 (213)
T ss_pred EECCCCCHHHHHHHH-HcCCCEEC----Cc--CCHHH-HHHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCC
Confidence 11 11222221 11 11222 233457999999885421 122577888887765
Q ss_pred -CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 138 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 138 -ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+|+++.|||+ .+.+.++++ .|+++|.+|..++
T Consensus 155 ~ip~~atGGI~-~~N~~~~l~-aGa~~vavgs~l~ 187 (213)
T PRK06552 155 QVNVMVTGGVN-LDNVKDWFA-AGADAVGIGGELN 187 (213)
T ss_pred CCEEEEECCCC-HHHHHHHHH-CCCcEEEEchHHh
Confidence 9999999996 799999998 6999999999885
No 229
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.67 E-value=0.0017 Score=65.74 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=87.8
Q ss_pred HHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----
Q 023070 24 LNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F---- 86 (287)
Q Consensus 24 ~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g---- 86 (287)
.+.|+ ..+.|+++|.+. +....||+++ +-+..+++.+++||-.|==+ |
T Consensus 73 ~~~a~~y~~~GA~aiSVl-------Te~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADav 137 (695)
T PRK13802 73 AALAREYEQGGASAISVL-------TEGRRFLGSL--------DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLV 137 (695)
T ss_pred HHHHHHHHHcCCcEEEEe-------cCcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEe
Confidence 33344 345578888886 2233344443 33455566677888777311 1
Q ss_pred ------CChhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEe
Q 023070 87 ------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLAN 143 (287)
Q Consensus 87 ------~~~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~n 143 (287)
.+.++..++.+...+.|.+.| -||...- +.+.-.+...|.+...++...+ ++.+|+.
T Consensus 138 LLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsE 217 (695)
T PRK13802 138 LLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAE 217 (695)
T ss_pred ehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEc
Confidence 122344555556666666555 4553210 0011112246777777777765 4678999
Q ss_pred cCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 144 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 144 GgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+||.+++|+..+.+ .|+|+|.||.++|..|+.-..+
T Consensus 218 SGI~~~~d~~~l~~-~G~davLIGeslm~~~dp~~~~ 253 (695)
T PRK13802 218 SGVFGAVEVEDYAR-AGADAVLVGEGVATADDHELAV 253 (695)
T ss_pred CCCCCHHHHHHHHH-CCCCEEEECHHhhCCCCHHHHH
Confidence 99999999998887 6999999999999998854433
No 230
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=97.64 E-value=0.0013 Score=61.97 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
.++.+.++++.+. .||+.+.+..|++... .-.+.++++|+++ ++.+.+...-+|+..+++.+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 6777878887655 6999999999887632 4567778888877 47788888889999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++.++.++ ++.- .+-|++..+++++.+.+||.+.=-+.|..|+.++++...+|.|++
T Consensus 208 ~~~l~~~~l~~i-------EeP~---~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWI-------EEPL---PPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceE-------ECCC---CccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 999999997766 2211 135788899999987899999999999999999999766888765
No 231
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.63 E-value=0.0019 Score=56.87 Aligned_cols=146 Identities=19% Similarity=0.286 Sum_probs=94.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
.+.++|...|...+.+-.+.++.|+|.+-+-.- . +.+..+.-+--++++++++.+++|+.|-+-.
T Consensus 4 ~I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------D----G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv---- 68 (229)
T PRK09722 4 KISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------D----GHFVPNLTLSPFFVSQVKKLASKPLDVHLMV---- 68 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------c----CccCCCcccCHHHHHHHHhcCCCCeEEEEEe----
Confidence 377899999999999999877778887555421 1 1112222333557777877777887776533
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCC-CC-------------------------------------------cCCCCcc--
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTR-DE-------------------------------------------KDGKKFR-- 123 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~-~~-------------------------------------------~~~~~~~-- 123 (287)
.+...+++.+.++|++.|++|.-.. .. ..++.|.
T Consensus 69 ~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~f 148 (229)
T PRK09722 69 TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPF 148 (229)
T ss_pred cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhc
Confidence 3566778888889999999985421 00 0011111
Q ss_pred --ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh-hhh
Q 023070 124 --ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES-LLE 172 (287)
Q Consensus 124 --~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~-~l~ 172 (287)
.-++.|+++++. .++.|.+-|||+ .+.+.++.+ .|||.+.+|++ +..
T Consensus 149 i~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~-aGad~~V~Gss~iF~ 203 (229)
T PRK09722 149 IPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME-AGADVFIVGTSGLFN 203 (229)
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEEChHHHcC
Confidence 112344544432 246688999997 678888887 69999999976 443
No 232
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.61 E-value=0.0024 Score=57.30 Aligned_cols=133 Identities=11% Similarity=0.136 Sum_probs=98.1
Q ss_pred CCCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 7 EDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
...|+..-+.+.+++...++.+.++.||..+.+.+| ..+++.-.+.++++++.+ ++.+.+...
T Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN 135 (263)
T cd03320 71 NRIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDAN 135 (263)
T ss_pred cCcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence 345666667777776665655566779999999865 123455567777887776 456677766
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++..+++.+++.++.+| ++.-. +.|++.+++++ .++||.+.=.+.++.++.++++...+|.|
T Consensus 136 ~~w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v 203 (263)
T cd03320 136 GGWSLEEALAFLEALAAGRIEYI-------EQPLP---PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGAL 203 (263)
T ss_pred CCCCHHHHHHHHHhhcccCCceE-------ECCCC---hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEE
Confidence 78999999999999999888766 22111 34677777776 78999998899999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 204 ~~ 205 (263)
T cd03320 204 VL 205 (263)
T ss_pred EE
Confidence 77
No 233
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.60 E-value=0.0029 Score=56.30 Aligned_cols=110 Identities=18% Similarity=0.303 Sum_probs=75.2
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~ 131 (287)
-||..+.+.+++..+ .+ .+.||.+|-....+.++....++.+.+.|..-|.+.-|-......... ..|+..+..
T Consensus 104 Igs~~~~n~~LL~~v----a~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~ 178 (250)
T PRK13397 104 VGARNMQNFEFLKTL----SH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPI 178 (250)
T ss_pred ECcccccCHHHHHHH----Hc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHH
Confidence 377778886665544 32 489999997767788899999999999999766553322222111111 467888889
Q ss_pred HHhhCCCcEEEe----cCCCC--HHHHHHHHHhcCccEEEEeh
Q 023070 132 VKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 132 i~~~~~ipVi~n----GgI~s--~~da~~~l~~~gad~VmiGR 168 (287)
+++..++||++. +|.+. +.-+..++. .||||+||=+
T Consensus 179 lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA-~GAdGl~IE~ 220 (250)
T PRK13397 179 IQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKA-VGANGIMMEV 220 (250)
T ss_pred HHHHhCCCeEECCCCCCcccchHHHHHHHHHH-hCCCEEEEEe
Confidence 998889999874 55543 233455555 6999999864
No 234
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.59 E-value=0.0029 Score=58.53 Aligned_cols=136 Identities=18% Similarity=0.191 Sum_probs=84.3
Q ss_pred HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC------------C----------
Q 023070 30 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV------------F---------- 86 (287)
Q Consensus 30 ~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~------------g---------- 86 (287)
.+.|+++|.+.- -...|+|+ .+-++.+++. +++||-.|==+ |
T Consensus 149 e~~GA~aISVLT-------d~~~F~Gs--------~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaai 213 (338)
T PLN02460 149 EKGGAACLSVLT-------DEKYFQGS--------FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAV 213 (338)
T ss_pred HhCCCcEEEEec-------CcCcCCCC--------HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHh
Confidence 445777777751 22334443 2345667776 78999888311 1
Q ss_pred CChhhHHHHHHHHHHcCCCEE-EEeccCC-----C--C--------cCCCCccccHHHHHHHHh-----hC---CCcEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLL-AVHGRTR-----D--E--------KDGKKFRADWNAIKAVKN-----AL---RIPVLA 142 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I-~vh~rt~-----~--~--------~~~~~~~~~~~~i~~i~~-----~~---~ipVi~ 142 (287)
.+..+..++.+...+.|.+.+ -||...- . + +.-.+...|++...++.. .+ ++.+|+
T Consensus 214 L~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~Vs 293 (338)
T PLN02460 214 LPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVG 293 (338)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEE
Confidence 122344556666666666555 4553210 0 0 011122467777777766 22 355789
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.+||+|++|+..+.+ .|+|+|.||.++|..|+.-..++
T Consensus 294 ESGI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l~ 331 (338)
T PLN02460 294 ESGLFTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGIA 331 (338)
T ss_pred CCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHHH
Confidence 999999999998887 69999999999999988655443
No 235
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.58 E-value=0.0027 Score=60.24 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=96.0
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+++++.+.++ .++.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++++
T Consensus 159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~ 223 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIA 223 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 36776765554 667899999997651 23455567788888876 5778888888899999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCc----cEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGC----EGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ga----d~Vmi 166 (287)
+++.+++.++.+| ++.- .+.|++..+++++.+++||.+.=.+.++.++.++++...+ |.+++
T Consensus 224 ~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 224 YAKALAPYGLRWY-------EEPG---DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred HHHHhhCcCCCEE-------ECCC---CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 9999999988777 2211 1357889999999999999998899999999999986555 77765
No 236
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.57 E-value=0.0025 Score=54.40 Aligned_cols=146 Identities=18% Similarity=0.193 Sum_probs=91.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh-----h---h---cCcccccccCChHHHHHHHHH-----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI-----A---R---RGNYGAFLMDNLPLVKSLVEK----- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~-----~---~---~~~~G~~l~~~~~~~~~iv~~----- 70 (287)
..|++.=|.+.++++..+.++. ++.|++.|++-+-.|... . + ..+.|..+.. +.+...++.
T Consensus 11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~--d~~~~A~~~gAdgv 88 (187)
T PRK07455 11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTL--EDLEEAIAAGAQFC 88 (187)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcH--HHHHHHHHcCCCEE
Confidence 4577777899999999998884 567899999975333210 0 0 1112222221 332222221
Q ss_pred -----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CC
Q 023070 71 -----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 138 (287)
Q Consensus 71 -----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 138 (287)
+++..+++.. +| ..+..+ +....+.|+|++-+..- . . ..-.++++.++..+ ++
T Consensus 89 ~~p~~~~~~~~~~~~~~~~~i----~G--~~t~~e-~~~A~~~Gadyv~~Fpt---~--~---~~G~~~l~~~~~~~~~i 153 (187)
T PRK07455 89 FTPHVDPELIEAAVAQDIPII----PG--ALTPTE-IVTAWQAGASCVKVFPV---Q--A---VGGADYIKSLQGPLGHI 153 (187)
T ss_pred ECCCCCHHHHHHHHHcCCCEE----cC--cCCHHH-HHHHHHCCCCEEEECcC---C--c---ccCHHHHHHHHhhCCCC
Confidence 1111122211 23 122223 44556799999988431 0 0 12357899999887 69
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
|+++.||| +++++.++++ .|+++|.++++++.
T Consensus 154 pvvaiGGI-~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 154 PLIPTGGV-TLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred cEEEeCCC-CHHHHHHHHH-CCCeEEEEehhccc
Confidence 99999999 6899999999 69999999988763
No 237
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.57 E-value=0.0075 Score=55.91 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc----ccHHHHHHHHhhCC
Q 023070 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALR 137 (287)
Q Consensus 62 ~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~~ 137 (287)
+...+.+...++..+.||.+-+. |.+.++..++++.++++|+|+|.++-..........+. .-.+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 44444444444455789988873 55667888999999999999999975421111111111 11467888888889
Q ss_pred CcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 138 IPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 138 ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+||++ +.++.+..++.+.+.+.|+|+|.+.
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 99884 4566677778777777899998663
No 238
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=97.56 E-value=0.0031 Score=59.29 Aligned_cols=126 Identities=11% Similarity=0.130 Sum_probs=96.5
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
..|+-....+.+++.+.+.++ ..+.||..+.+.. .+.++++++.+ ++.+.+..+
T Consensus 115 ~v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN 171 (361)
T cd03322 115 GIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVH 171 (361)
T ss_pred eeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECC
Confidence 344444455667777755444 5667999888853 56688888877 467788877
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+.+++..+++.+++.++.++ ++.- .+.+++.++++++.+++||.+.=.+.++.++..+++...+|.+
T Consensus 172 ~~w~~~~A~~~~~~l~~~~l~~i-------EeP~---~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~ 241 (361)
T cd03322 172 HRLTPNQAARFGKDVEPYRLFWM-------EDPT---PAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYI 241 (361)
T ss_pred CCCCHHHHHHHHHHhhhcCCCEE-------ECCC---CcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEE
Confidence 78999999999999999888777 2211 1357888999999999999998889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 242 ~~ 243 (361)
T cd03322 242 RT 243 (361)
T ss_pred ec
Confidence 66
No 239
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=97.55 E-value=0.0039 Score=58.15 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=102.6
Q ss_pred CCCEEEEe-cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQF-CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi-~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-... ...+++.+.+-++ .++.||..+.+..|... .. + ..+++.-.+.++++++.+ ++.+.+..
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~----~~--~---~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGP----SD--G---HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----Cc--c---hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 34554443 2458888866554 66789999999865310 00 0 023456677888888877 46777877
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
..+|+.+++..+++.+++.++.+| ++.- .+.|++..+.+++.+++||.+.=.+.+..++.++++...+|.
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~i-------EeP~---~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWI-------EEPL---IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCccc-------cCCC---CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCE
Confidence 778999999999999999887655 2211 135788899999999999999888999999999999777888
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
|++
T Consensus 249 i~~ 251 (341)
T cd03327 249 LQP 251 (341)
T ss_pred Eec
Confidence 876
No 240
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.52 E-value=0.00063 Score=58.76 Aligned_cols=142 Identities=15% Similarity=0.365 Sum_probs=89.7
Q ss_pred EEEEecCCCHHHHHHHHHHHc-CCCCEEEEe--cc--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 11 LFVQFCANDPEILLNAARRVE-PYCDYVDIN--LG--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN--~g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.++|...|+..+.+..+.++ .|+|.+-+- -| +|+ .-+--++++++++.+++|+.+-+-.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn---------------~~~g~~~i~~i~~~~~~~~DvHLMv 66 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPN---------------LTFGPDIIKAIRKITDLPLDVHLMV 66 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSS---------------B-B-HHHHHHHHTTSSSEEEEEEES
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCc---------------ccCCHHHHHHHhhcCCCcEEEEeee
Confidence 678899999999999999775 588864443 22 332 2233566777888888898888743
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCC-------------------------------------------cCCCCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------------------------------------KDGKKF 122 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------------------------------------~~~~~~ 122 (287)
.++..+++.+.++|++.|++|...... ..++.|
T Consensus 67 ----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 67 ----ENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp ----SSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSS
T ss_pred ----ccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCc
Confidence 234456777788888888888532110 011222
Q ss_pred c----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 123 R----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 123 ~----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
. .-++.|+++++. .++.|.+-|||+. +.+..+.+ .|||.+.+|+++..+
T Consensus 143 q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~-aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 143 QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVE-AGADIFVAGSAIFKA 200 (201)
T ss_dssp B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHH-HT--EEEESHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHH-cCCCEEEECHHHhCC
Confidence 1 124445555443 3588999999965 78888887 599999999987653
No 241
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=97.50 E-value=0.0032 Score=60.15 Aligned_cols=142 Identities=15% Similarity=0.154 Sum_probs=101.0
Q ss_pred ecCCCHHHHHH-HHHHHcCCCCEEEEeccCChh---hhhcCcccc------cc----------cCChHHHHHHHHHHhhc
Q 023070 15 FCANDPEILLN-AARRVEPYCDYVDINLGCPQR---IARRGNYGA------FL----------MDNLPLVKSLVEKLALN 74 (287)
Q Consensus 15 i~g~~~~~~~~-aA~~~~~g~d~IdiN~gcP~~---~~~~~~~G~------~l----------~~~~~~~~~iv~~v~~~ 74 (287)
+.+.+++++.+ |.+.++.||..+.|.+|-|-. .....+.|. .. .+.++...+.++++++.
T Consensus 123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 45667777754 445667799999998874320 000000000 00 01224456789999988
Q ss_pred c--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHH
Q 023070 75 L--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 152 (287)
Q Consensus 75 ~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da 152 (287)
+ ++.+.+...-+|+.+++..+++.+++.++.+|- +.-. +.+++..+++++.+++||.+.=.+.++.++
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------eP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~ 272 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------DPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDC 272 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------CCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHH
Confidence 7 467888877789999999999999998887772 2111 357888999999999999998889999999
Q ss_pred HHHHHhcCccEEEE
Q 023070 153 QKCLEETGCEGVLS 166 (287)
Q Consensus 153 ~~~l~~~gad~Vmi 166 (287)
.++++...+|.|.+
T Consensus 273 ~~li~~~a~dii~~ 286 (404)
T PRK15072 273 KQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHcCCCCEEec
Confidence 99999877898886
No 242
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.49 E-value=0.001 Score=57.91 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+..+.+.|+|++.+.+-....... ...+..|+.++++.+. .++||++-|||. .+++.++++ .|++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~-~Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLA-TGVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHH-cCCCEEEEhhHhhCC
Confidence 455667899999997654433221 2224567888888776 589999999995 799999998 699999999999866
Q ss_pred ccchh
Q 023070 174 PALFA 178 (287)
Q Consensus 174 P~lf~ 178 (287)
++.-.
T Consensus 193 ~d~~~ 197 (211)
T PRK03512 193 ADWRA 197 (211)
T ss_pred CCHHH
Confidence 65433
No 243
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=97.47 E-value=0.0055 Score=56.33 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=94.6
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--CcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--VPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g~ 87 (287)
+....|...+++.+.+.+.. +.||..+.+..| . .+++.-.+.++++++.++ +.+.+...-+|
T Consensus 102 ~~~~~l~~~~~~~~~~~~~~-~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w 165 (307)
T TIGR01927 102 YYVALLPAGDPALLLLRSAK-AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPDKAELRLDANGGL 165 (307)
T ss_pred cceeeccCCCHHHHHHHHHH-hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCCCCeEEEeCCCCC
Confidence 44555666778877765554 669999988754 1 145555677778877663 55666666689
Q ss_pred ChhhHHHHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+..++.++++.+++ .++.+| ++ |.+.+ +.++.+++.+++||.+.=.+.++.|+.++++...+|.|
T Consensus 166 ~~~~A~~~~~~l~~~~~~~i~~i-------Eq----P~~~~-~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i 233 (307)
T TIGR01927 166 SPDEAQQFLKALDPNLRGRIAFL-------EE----PLPDA-DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGAL 233 (307)
T ss_pred CHHHHHHHHHhcccccCCCceEE-------eC----CCCCH-HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceE
Confidence 99999999999997 667666 22 11222 67888988999999999999999999999987566777
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 234 ~i 235 (307)
T TIGR01927 234 VI 235 (307)
T ss_pred EE
Confidence 66
No 244
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=97.47 E-value=0.0066 Score=57.15 Aligned_cols=134 Identities=16% Similarity=0.225 Sum_probs=97.7
Q ss_pred CCCEEEEecCCCHHHH-HHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEe
Q 023070 8 DRPLFVQFCANDPEIL-LNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKI 83 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~-~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKi 83 (287)
..|+-..+...++++. .++.+..+ .||..+.+..| . .+++.-.+.++++++.+ ++.+.+..
T Consensus 130 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~~~~l~~Da 194 (368)
T TIGR02534 130 SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGDRASVRVDV 194 (368)
T ss_pred ceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3455555555665544 44444453 69999998754 1 23555567778887776 45666776
Q ss_pred cCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 84 RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 84 R~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.-+|+.+++.++++.+++.++.+| ++.-. +.|++.++++++.+++||.+.-.+.++.++.++++..++|.
T Consensus 195 N~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~ 264 (368)
T TIGR02534 195 NAAWDERTALHYLPQLADAGVELI-------EQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKASAADV 264 (368)
T ss_pred CCCCCHHHHHHHHHHHHhcChhhe-------ECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCE
Confidence 668999999999999999887655 22111 34688889999999999999889999999999999878998
Q ss_pred EEE
Q 023070 164 VLS 166 (287)
Q Consensus 164 Vmi 166 (287)
+.+
T Consensus 265 ~~~ 267 (368)
T TIGR02534 265 FAL 267 (368)
T ss_pred EEE
Confidence 876
No 245
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.46 E-value=0.0009 Score=59.54 Aligned_cols=151 Identities=23% Similarity=0.304 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCCHH-HHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCC---hHHHHHHHHHHhhc-c-CCcE
Q 023070 7 EDRPLFVQFCANDPE-ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDN---LPLVKSLVEKLALN-L-NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~-~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~---~~~~~~iv~~v~~~-~-~~pv 79 (287)
.+.|++.=+++.||- ++..-.+.+ +.||.+|. || |.--...+.|...|... .++=.++++..++. . .+|.
T Consensus 80 ~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 80 KDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--E
T ss_pred cCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeee
Confidence 468999999999995 344444444 45999884 65 65333344444444332 12223333333322 1 1222
Q ss_pred EEEecCCCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccH----HHHHHHHh---hC--CCc-EEEecCCCC
Q 023070 80 SCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADW----NAIKAVKN---AL--RIP-VLANGNVRH 148 (287)
Q Consensus 80 ~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~----~~i~~i~~---~~--~ip-Vi~nGgI~s 148 (287)
.. +. +-++.+.++|+|.|++| |.|..+..+......+ +.+.++.+ .+ ++- ++..|-|.+
T Consensus 157 vf------~~----e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~ 226 (268)
T PF09370_consen 157 VF------NE----EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIAT 226 (268)
T ss_dssp E-------SH----HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-S
T ss_pred ec------CH----HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 11 22 33566668999999999 4454432221111222 22333333 22 343 445566999
Q ss_pred HHHHHHHHHhcC-ccEEEEehhh
Q 023070 149 MEDVQKCLEETG-CEGVLSAESL 170 (287)
Q Consensus 149 ~~da~~~l~~~g-ad~VmiGR~~ 170 (287)
|+|++.+++.+. |+|..-|..+
T Consensus 227 p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 227 PEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHHHHHHHhcCCCCCEEecccch
Confidence 999999999886 9998776543
No 246
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.46 E-value=0.0096 Score=51.51 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=82.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
+.|++.=|.+.++++..+.++. ++.|++.|||.+-.|.. .+.++.+++.. ++.|.+-.
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a------------------~~~i~~l~~~~~~~~vGAGT-- 66 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVA------------------LDAIRLLRKEVPDALIGAGT-- 66 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccH------------------HHHHHHHHHHCCCCEEEEEe--
Confidence 5678888999999999999995 56689999999765542 22333333222 11111110
Q ss_pred CCChhhHHHHHHHHH-----------------------------------------HcCCCEEEEeccCCCCcCCCCccc
Q 023070 86 FPNLQDTIKYAKMLE-----------------------------------------DAGCSLLAVHGRTRDEKDGKKFRA 124 (287)
Q Consensus 86 g~~~~~~~~~a~~l~-----------------------------------------~~G~~~I~vh~rt~~~~~~~~~~~ 124 (287)
=.+ .+-++.+. ++|++.+-+.+-.. .
T Consensus 67 Vl~----~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~---------~ 133 (204)
T TIGR01182 67 VLN----PEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEV---------S 133 (204)
T ss_pred CCC----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchh---------c
Confidence 001 11122233 34444444432110 1
Q ss_pred c-HHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 125 D-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 125 ~-~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
. ..+++.++.-. ++|++..|||. ++.+.+.++ .|+.+|.+|+.++....
T Consensus 134 GG~~yikal~~plp~i~~~ptGGV~-~~N~~~~l~-aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 134 GGVKMLKALAGPFPQVRFCPTGGIN-LANVRDYLA-APNVACGGGSWLVPKDL 184 (204)
T ss_pred CCHHHHHHHhccCCCCcEEecCCCC-HHHHHHHHh-CCCEEEEEChhhcCchh
Confidence 1 36788887654 79999999995 599999999 59999999988875443
No 247
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.46 E-value=0.0079 Score=56.52 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCEEEEecCCCHHHHH-HHHHHHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEec
Q 023070 9 RPLFVQFCANDPEILL-NAARRVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~-~aA~~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR 84 (287)
.|+-..+...+++++. ++.+.+..| |..+.+..|- .+++.-.+.++++++.+ ++.+.+...
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDaN 196 (365)
T cd03318 132 LPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDVN 196 (365)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 4554445445555544 455567778 9999998641 13444456677777776 356777777
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++.++++.+++.++.+| ++.-. +.+++.++++++..++||.+.=.+.++.++.++++...+|.+
T Consensus 197 ~~~~~~~A~~~~~~l~~~~~~~i-------EeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~ 266 (365)
T cd03318 197 QAWDESTAIRALPRLEAAGVELI-------EQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVF 266 (365)
T ss_pred CCCCHHHHHHHHHHHHhcCccee-------eCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeE
Confidence 78999999999999999987655 22111 247888999999999999988889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
++
T Consensus 267 ~~ 268 (365)
T cd03318 267 SL 268 (365)
T ss_pred EE
Confidence 65
No 248
>PRK06852 aldolase; Validated
Probab=97.40 E-value=0.005 Score=56.34 Aligned_cols=105 Identities=13% Similarity=0.108 Sum_probs=65.7
Q ss_pred HHHHHHHHhhccCCcEEEEe-cCCC------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 64 VKSLVEKLALNLNVPVSCKI-RVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 64 ~~~iv~~v~~~~~~pv~vKi-R~g~------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
+.+++++. ...++|+.+=+ -.|. +.+.....++...+.|+|.|-+---+... ..+-+.++++.+.+
T Consensus 156 l~~v~~ea-~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~------~g~~e~f~~vv~~~ 228 (304)
T PRK06852 156 AAQIIYEA-HKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEG------ANPAELFKEAVLAA 228 (304)
T ss_pred HHHHHHHH-HHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCC------CCCHHHHHHHHHhC
Confidence 33444432 34589987522 1132 22234455677789999999775222111 13457788888888
Q ss_pred -CCcEEEecCCC-CHHHHHH----HHHhcCccEEEEehhhhhCcc
Q 023070 137 -RIPVLANGNVR-HMEDVQK----CLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 -~ipVi~nGgI~-s~~da~~----~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||+..||=. +.+++.+ .++..|+.||.+||=....|.
T Consensus 229 g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 229 GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 89999888866 4444443 444369999999998887654
No 249
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=97.40 E-value=0.0062 Score=57.99 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=92.4
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
+++++.+-++ .++ .||..+.|..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++.++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 6787777665 444 599999997541 23455567788888776 46677777778999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++ ++.++ ++ |.+ |++.++++++.+++||.+.-.+.+.+++.++++...+|.+++
T Consensus 233 ~~~l~~-~l~~i-------Ee----P~~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~ 290 (395)
T cd03323 233 AKELEG-VLAYL-------ED----PCG-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLA 290 (395)
T ss_pred HHhcCc-CCCEE-------EC----CCC-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEee
Confidence 999998 77665 22 223 788899999999999998878999999999999877888854
No 250
>PRK08999 hypothetical protein; Provisional
Probab=97.38 E-value=0.001 Score=61.05 Aligned_cols=73 Identities=16% Similarity=0.291 Sum_probs=56.4
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
++.+.+.|+|++.+.+-..........+..++.++++++..++||++-||| +++++.++++ +|+++|.+-+++
T Consensus 239 ~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g~~gva~i~~~ 311 (312)
T PRK08999 239 LARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hCCCEEEEEEEe
Confidence 455677899999997654433221122456888999998899999999999 8899999888 699999887654
No 251
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.38 E-value=0.0054 Score=55.09 Aligned_cols=143 Identities=13% Similarity=0.235 Sum_probs=85.4
Q ss_pred CCCCEEEEecCCC-----H--HHHHHHH-HHHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC
Q 023070 7 EDRPLFVQFCAND-----P--EILLNAA-RRVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN 76 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~--~~~~~aA-~~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~ 76 (287)
.+.|+++++.++. + ..+.-.. +.+..|+|+|-++ +|.+... +..+.+.+++++. ...+
T Consensus 73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~-----------~~l~~l~~v~~ea-~~~G 140 (264)
T PRK08227 73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEH-----------QSIKNIIQLVDAG-LRYG 140 (264)
T ss_pred CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHH-HHhC
Confidence 4678999998842 1 2222222 2556688876654 5533210 0112233333332 3458
Q ss_pred CcEEEEecCCCCh---hhHH-HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC-CHHH
Q 023070 77 VPVSCKIRVFPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR-HMED 151 (287)
Q Consensus 77 ~pv~vKiR~g~~~---~~~~-~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~-s~~d 151 (287)
+|+.+=...|... .+.+ ..++...+.|+|.|-+- +++ +.++++.+..++||+..||=. +.++
T Consensus 141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------y~~----~~f~~vv~a~~vPVviaGG~k~~~~~ 207 (264)
T PRK08227 141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------YVE----EGFERITAGCPVPIVIAGGKKLPERD 207 (264)
T ss_pred CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------CCH----HHHHHHHHcCCCcEEEeCCCCCCHHH
Confidence 9988722224321 2233 34566789999999653 221 567888888899999999866 3344
Q ss_pred HHH----HHHhcCccEEEEehhhhhCcc
Q 023070 152 VQK----CLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 152 a~~----~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.+ +++ .|+.||.+||=....|+
T Consensus 208 ~L~~v~~ai~-aGa~Gv~~GRNIfQ~~~ 234 (264)
T PRK08227 208 ALEMCYQAID-EGASGVDMGRNIFQSEH 234 (264)
T ss_pred HHHHHHHHHH-cCCceeeechhhhccCC
Confidence 443 444 69999999998876654
No 252
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=97.36 E-value=0.00023 Score=62.50 Aligned_cols=47 Identities=28% Similarity=0.543 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 128 ~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++..+...++|+|+.|||+|.+++.++++ .|||.|++|..+..||+
T Consensus 173 v~~~~~~~~~~~LivGGGIrs~e~A~~~~~-aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 173 VIAAVKKLSDIPLIVGGGIRSPEQAREMAE-AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HHHHHHHSSSSEEEEESS--SHHHHHHHHC-TTSSEEEESCHHHHHH-
T ss_pred HHHHHHhcCCccEEEeCCcCCHHHHHHHHH-CCCCEEEECCEEEEcch
Confidence 344444456899999999999999999998 59999999999999998
No 253
>PRK14057 epimerase; Provisional
Probab=97.36 E-value=0.0076 Score=53.75 Aligned_cols=145 Identities=17% Similarity=0.217 Sum_probs=89.2
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcC-CCCEEEEec--c--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEP-YCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~--g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
..|+.++|...|...+.+-.+.++. |+|.+-+-. | +|+ .-+--++++++++ ++|+.|-
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~p~DvH 81 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQ---------------FTVGPWAVGQLPQ--TFIKDVH 81 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCc---------------cccCHHHHHHhcc--CCCeeEE
Confidence 4689999999999999999987765 888755542 2 232 1122334444443 4565555
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC------------C----------c-----------------------
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E----------K----------------------- 117 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~------------~----------~----------------------- 117 (287)
+-. .+...+++.+.++|++.|++|.-... + +
T Consensus 82 LMV----~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~ 157 (254)
T PRK14057 82 LMV----ADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEV 157 (254)
T ss_pred eee----CCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCE
Confidence 422 34556677777788888888742100 0 0
Q ss_pred -------CCCCcc----ccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 118 -------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 118 -------~~~~~~----~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++.|. .-++-|+++++. .++.|.+-|||+ .+.+.++.+ .|||.+++|++++.+++
T Consensus 158 VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~-aGad~~V~GSalF~~~d 229 (254)
T PRK14057 158 IQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLIA-QGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 011111 112334444432 246689999995 578888887 69999999998876554
No 254
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.012 Score=50.89 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+++++.-+=..|...+. ++ ..++|+|.+-+-+-. +..-+...++..+ ..+.-+.+-+-.-
T Consensus 56 d~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~-~~~~~v~iDl~~~ 116 (217)
T COG0269 56 DKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAK-EYGKEVQIDLIGV 116 (217)
T ss_pred CCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHH-HcCCeEEEEeecC
Confidence 44455555444443332 33 245688888775322 3344455555443 3456666665444
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
|+ ..+-++.+++.|++.+.+|-..-.|..+. ...|+.+..+++..+ .+|-..||| +++++..+.. .|+|.|
T Consensus 117 ~~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~-~~~~iv 189 (217)
T COG0269 117 WD---PEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKG-IGADIV 189 (217)
T ss_pred CC---HHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhc-CCCCEE
Confidence 44 44556777789999999994433333222 233567777777654 789999999 5899998888 589999
Q ss_pred EEehhhhhCcc
Q 023070 165 LSAESLLENPA 175 (287)
Q Consensus 165 miGR~~l~nP~ 175 (287)
.+||++-.-.+
T Consensus 190 IvGraIt~a~d 200 (217)
T COG0269 190 IVGRAITGAKD 200 (217)
T ss_pred EECchhcCCCC
Confidence 99998865433
No 255
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.32 E-value=0.0014 Score=57.05 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=62.1
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+..++|+.+++.|+++|.+..-... . ....+.++.+++.+++||+.-|+|.+..++..+++ .|||+|.++
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~----~--~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~ 101 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKY----F--QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLI 101 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccc----c--CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEe
Confidence 3457899999999999999988643222 1 13456778888888999999999999999998888 699999988
Q ss_pred hhhhh
Q 023070 168 ESLLE 172 (287)
Q Consensus 168 R~~l~ 172 (287)
-..+.
T Consensus 102 ~~~~~ 106 (217)
T cd00331 102 VAALD 106 (217)
T ss_pred eccCC
Confidence 76654
No 256
>PLN02535 glycolate oxidase
Probab=97.31 E-value=0.0038 Score=58.62 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=37.7
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++||++ .||.+++|+..+.+ .|+|+|.+.
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~-~GvD~I~vs 251 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVE-VGVAGIIVS 251 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHh-cCCCEEEEe
Confidence 46799999999999999888 66899999998888 699999774
No 257
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.30 E-value=0.021 Score=51.99 Aligned_cols=150 Identities=15% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCCEEEEe-cCCCHHHHHHHHHH-HcCCCCEEEEeccC-ChhhhhcCcccc---cccCChHHHHHHHHHHhhc-c--CCc
Q 023070 8 DRPLFVQF-CANDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNYGA---FLMDNLPLVKSLVEKLALN-L--NVP 78 (287)
Q Consensus 8 ~~p~~~Qi-~g~~~~~~~~aA~~-~~~g~d~IdiN~gc-P~~~~~~~~~G~---~l~~~~~~~~~iv~~v~~~-~--~~p 78 (287)
..|+++-+ .|.+|..+.+.++. ++.|+.+|.|-=.+ |. +.+.+|+ ..+-.++...+.+++++++ . +++
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk---~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~ 154 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLK---KNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFM 154 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCc---cccccCCCCcccccCHHHHHHHHHHHHHhccCCCeE
Confidence 56776554 23588888888884 56799999994321 21 1122232 2344556666666666554 3 455
Q ss_pred EEEEecC---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecCCCCHH
Q 023070 79 VSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHME 150 (287)
Q Consensus 79 v~vKiR~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGgI~s~~ 150 (287)
|..+.-. +...+++++-++...++|+|.|-+++.. .+.+.+.++.+.+ ++|++.+.+-.-.-
T Consensus 155 IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~ 224 (285)
T TIGR02320 155 IIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------KDPDEILEFARRFRNHYPRTPLVIVPTSYYTT 224 (285)
T ss_pred EEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHhhhhCCCCCEEEecCCCCCC
Confidence 5555322 2357789999999999999999998321 2334555555544 46888765311111
Q ss_pred HHHHHHHhcCccEEEEehhhh
Q 023070 151 DVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 151 da~~~l~~~gad~VmiGR~~l 171 (287)
++.++-+ .|+..|..|-.++
T Consensus 225 ~~~eL~~-lG~~~v~~~~~~~ 244 (285)
T TIGR02320 225 PTDEFRD-AGISVVIYANHLL 244 (285)
T ss_pred CHHHHHH-cCCCEEEEhHHHH
Confidence 3444444 6999999985554
No 258
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.29 E-value=0.0084 Score=58.01 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=83.3
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC------------C----------CC
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV------------F----------PN 88 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~------------g----------~~ 88 (287)
+.|+++|.+.. ....||+++ +-+..+++.+++||-.|==+ | .+
T Consensus 80 ~~gA~aiSVlT-------e~~~F~Gs~--------~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~ 144 (454)
T PRK09427 80 KHYASAISVLT-------DEKYFQGSF--------DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLD 144 (454)
T ss_pred HcCCeEEEEec-------CcCcCCCCH--------HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCC
Confidence 55677777762 223344432 23455666677888877311 1 12
Q ss_pred hhhHHHHHHHHHHcCCCEE-EEeccCC--------------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHH
Q 023070 89 LQDTIKYAKMLEDAGCSLL-AVHGRTR--------------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMED 151 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I-~vh~rt~--------------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~d 151 (287)
.++..++.+...+.|.+.+ -||...- +.+.-.+...|.+...++...+ ++.+|+-+||.|++|
T Consensus 145 ~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d 224 (454)
T PRK09427 145 DEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQ 224 (454)
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHH
Confidence 2344556666666666655 5553210 0011112246777777777665 577889999999999
Q ss_pred HHHHHHhcCccEEEEehhhhhCccchhchh
Q 023070 152 VQKCLEETGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 152 a~~~l~~~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
+..+. . |+|+|.||.++|..|+.-..++
T Consensus 225 ~~~~~-~-~~davLiG~~lm~~~d~~~~~~ 252 (454)
T PRK09427 225 VRELS-P-FANGFLIGSSLMAEDDLELAVR 252 (454)
T ss_pred HHHHH-h-cCCEEEECHHHcCCCCHHHHHH
Confidence 99864 3 6999999999999998655443
No 259
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.28 E-value=0.006 Score=54.79 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=74.0
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCCccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~~~~~~~~i~~i 132 (287)
||..+.+++++ +++. ..+.||.+|.....+.++....++.+.+.|..-|++ |..+..-........||..+..+
T Consensus 115 ~s~~~~n~~LL----~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~l 189 (260)
T TIGR01361 115 GARNMQNFELL----KEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVL 189 (260)
T ss_pred CcccccCHHHH----HHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHH
Confidence 45555555543 3333 358999999777667888989999999999976655 53232210111225799999999
Q ss_pred HhhCCCcEEE-ecCCCC-----HHHHHHHHHhcCccEEEEehhh
Q 023070 133 KNALRIPVLA-NGNVRH-----MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 133 ~~~~~ipVi~-nGgI~s-----~~da~~~l~~~gad~VmiGR~~ 170 (287)
++..++||+. ++-... +.-+..+.. .||||+||=+-+
T Consensus 190 k~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~H~ 232 (260)
T TIGR01361 190 KKETHLPIIVDPSHAAGRRDLVIPLAKAAIA-AGADGLMIEVHP 232 (260)
T ss_pred HHhhCCCEEEcCCCCCCccchHHHHHHHHHH-cCCCEEEEEeCC
Confidence 9888999999 333322 344455665 699999987544
No 260
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=97.27 E-value=0.0048 Score=54.74 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=79.3
Q ss_pred CCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 9 RPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 9 ~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
.|+++-+ +|++|++..+.++ +++.|+++|.|=-+ ....+.+++++++ ++||...+.
T Consensus 74 ~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~ViaRtd 133 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIAHTG 133 (240)
T ss_pred CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEEEeC
Confidence 4676655 3456677777776 55678999888521 1234456666554 488887766
Q ss_pred CCC-----------------ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC
Q 023070 85 VFP-----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 147 (287)
Q Consensus 85 ~g~-----------------~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~ 147 (287)
..+ ..+++++-++.++++|++.|.+.+. +.+.++++.+.+++|++++|.=.
T Consensus 134 ~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~gag~ 201 (240)
T cd06556 134 LTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIGAGS 201 (240)
T ss_pred CchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEecCc
Confidence 521 1346677788899999999998633 45788999999999999887432
Q ss_pred CHHHHHHHHHhcCccEEEEe
Q 023070 148 HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiG 167 (287)
+||+-++-
T Consensus 202 ------------~~dgq~lv 209 (240)
T cd06556 202 ------------GTDGQFLV 209 (240)
T ss_pred ------------CCCceEEe
Confidence 78887654
No 261
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.26 E-value=0.0074 Score=54.51 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=86.3
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ +++.|+++|-+|- ..|-...-..+.-.++++.+++.+ ++||.+.+.. .+..++++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~G----------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 83 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLG----------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIE 83 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHH
Confidence 37778888777 4567999998882 234444445555566666666554 5888888644 34578999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi------~nGgI~s~~da~~~l~ 157 (287)
+++.+++.|++++.+..-.... .+...-+++++.+.+.+++||+ .+|---+++.+.++.+
T Consensus 84 ~a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 84 LARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 9999999999999987543221 1111234667788888889987 3466667888877775
No 262
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=97.25 E-value=0.031 Score=49.18 Aligned_cols=138 Identities=14% Similarity=0.072 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCC--cEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV--PVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~--pv~vKiR~ 85 (287)
+.|+=+.|.-.+|+.|.+. .+++|+|.|-+|.=.. ..+.++++.+++. +. ...+-+..
T Consensus 68 ~~~~DvHLMv~~P~~~i~~--~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ik~~-g~~~kaGlalnP 127 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKA--CVAAGADIVTLQVEQT-----------------HDLALTIEWLAKQ-KTTVLIGLCLCP 127 (228)
T ss_pred CCCEEEEeccCCHHHHHHH--HHHhCCCEEEEcccCc-----------------ccHHHHHHHHHHC-CCCceEEEEECC
Confidence 5688899999999998754 4667999999995311 1245666666654 44 44555545
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCCCCccccHHHHHHHHhh-----CCCcEEEecCCCCHHHHHHHHH
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLE 157 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~~~~~~~~~~i~~i~~~-----~~ipVi~nGgI~s~~da~~~l~ 157 (287)
+...+....+ .+. +|.|.|-.. ...|... +.-++-|+++++. .++.|-+-|||+ .+.+.++.+
T Consensus 128 ~Tp~~~i~~~----l~~-vD~VLiMtV~PGfgGQ~f~---~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~ 198 (228)
T PRK08091 128 ETPISLLEPY----LDQ-IDLIQILTLDPRTGTKAPS---DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQ 198 (228)
T ss_pred CCCHHHHHHH----Hhh-cCEEEEEEECCCCCCcccc---HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHH
Confidence 4443333333 222 788866433 3322211 2334556655542 246689999996 688888887
Q ss_pred hcCccEEEEehhhhhCcc
Q 023070 158 ETGCEGVLSAESLLENPA 175 (287)
Q Consensus 158 ~~gad~VmiGR~~l~nP~ 175 (287)
.|||.+.+|+++..+++
T Consensus 199 -aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 199 -HQIDWVVSGSALFSQGE 215 (228)
T ss_pred -CCCCEEEEChhhhCCCC
Confidence 69999999999877666
No 263
>PLN02979 glycolate oxidase
Probab=97.25 E-value=0.0047 Score=57.79 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=37.5
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++|||+ .||.+++|+.++.+ .|+|+|.++
T Consensus 209 ~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~-~Gvd~I~Vs 251 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 251 (366)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHh-cCCCEEEEC
Confidence 35799999999999999988 55789999999998 699999775
No 264
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=97.22 E-value=0.023 Score=52.55 Aligned_cols=131 Identities=10% Similarity=0.142 Sum_probs=94.8
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRV 85 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~ 85 (287)
.|+.+-| .+++.+.+.++ ..+.||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-
T Consensus 110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~ 172 (320)
T PRK02714 110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG 172 (320)
T ss_pred Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence 4454444 33455555444 567799999887541 23455567778888776 5677777777
Q ss_pred CCChhhHHHHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 86 FPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+|+.+++.++++.+++ .++.+| +|.-. ..+++..+.+++.+++||.+.=.+.++.|+..+++...+|
T Consensus 173 ~w~~~~A~~~~~~l~~l~~~~i~~i-------EqP~~---~~~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d 242 (320)
T PRK02714 173 GLSLEEAKRWLQLCDRRLSGKIEFI-------EQPLP---PDQFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRG 242 (320)
T ss_pred CCCHHHHHHHHHHHhhccCCCccEE-------ECCCC---cccHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCC
Confidence 8999999999999987 466655 22111 2478888999999999999999999999999999876667
Q ss_pred EEEE
Q 023070 163 GVLS 166 (287)
Q Consensus 163 ~Vmi 166 (287)
.|.+
T Consensus 243 ~v~i 246 (320)
T PRK02714 243 IFVI 246 (320)
T ss_pred EEEE
Confidence 6655
No 265
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=97.18 E-value=0.017 Score=52.53 Aligned_cols=151 Identities=16% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCCCEEEEecC--CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEE
Q 023070 7 EDRPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCK 82 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vK 82 (287)
.+.|+++-+=+ .+|..+.+.++. .+.|+.+|.|-=... + .+.+..++.-+-.++...+-|++++++. +.++.+=
T Consensus 72 ~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~-p-K~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~Ii 149 (285)
T TIGR02317 72 TDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVL-P-KRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVII 149 (285)
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCC-c-cccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEE
Confidence 35788876622 348898888884 567999999974331 1 1223333332334444444455555443 4455555
Q ss_pred ecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHHHHH
Q 023070 83 IRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKC 155 (287)
Q Consensus 83 iR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da~~~ 155 (287)
-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.+++|+.+| ||-.-.-++.++
T Consensus 150 ARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL 218 (285)
T TIGR02317 150 ARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADEL 218 (285)
T ss_pred EEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHH
Confidence 554 234678888899999999999999753 23567888888888898433 332111234444
Q ss_pred HHhcCccEEEEehhhh
Q 023070 156 LEETGCEGVLSAESLL 171 (287)
Q Consensus 156 l~~~gad~VmiGR~~l 171 (287)
-+ .|+..|..|..++
T Consensus 219 ~~-lGv~~v~~~~~~~ 233 (285)
T TIGR02317 219 RE-AGYKMVIYPVTAF 233 (285)
T ss_pred HH-cCCcEEEEchHHH
Confidence 44 6999999985554
No 266
>PRK08185 hypothetical protein; Provisional
Probab=97.17 E-value=0.023 Score=51.64 Aligned_cols=158 Identities=19% Similarity=0.317 Sum_probs=93.3
Q ss_pred CCCCEEEEecCCC----HHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHHH
Q 023070 7 EDRPLFVQFCAND----PEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKSL 67 (287)
Q Consensus 7 ~~~p~~~Qi~g~~----~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~i 67 (287)
...|+|+|+.-.. +..+...++ .++. .+. |-||+ .|.. ...-+.+|.|-+++ +.+...++
T Consensus 36 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP-V~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~v 114 (283)
T PRK08185 36 NNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP-FVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEV 114 (283)
T ss_pred hCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 4679999996532 233555555 3333 343 66775 3433 22334555454433 22334444
Q ss_pred HHHHhhccCCcEEEEecC-CC---C---------hhhHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHH
Q 023070 68 VEKLALNLNVPVSCKIRV-FP---N---------LQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAI 129 (287)
Q Consensus 68 v~~v~~~~~~pv~vKiR~-g~---~---------~~~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i 129 (287)
++... ..+++|-..+.. |. . ..+..+..+.+++.|+|++.+ ||...... ....+++.+
T Consensus 115 v~~a~-~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~---kp~L~~e~l 190 (283)
T PRK08185 115 VELAH-KVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDK---KPELQMDLL 190 (283)
T ss_pred HHHHH-HcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCC---CCCcCHHHH
Confidence 43332 346666655432 11 0 113334344445669999999 76654321 124689999
Q ss_pred HHHHhhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 130 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 130 ~~i~~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+++++.+++|++.-||+..+ ++++++++ .|+.-|=|++.+
T Consensus 191 ~~I~~~~~iPLVlHGgsg~~~e~~~~ai~-~GI~KiNi~T~l 231 (283)
T PRK08185 191 KEINERVDIPLVLHGGSANPDAEIAESVQ-LGVGKINISSDM 231 (283)
T ss_pred HHHHHhhCCCEEEECCCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 99999999999999998655 45566766 689989888765
No 267
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=97.17 E-value=0.017 Score=53.52 Aligned_cols=130 Identities=14% Similarity=0.167 Sum_probs=92.8
Q ss_pred CCCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~ 85 (287)
..|+-..++..+|+++.+.++ .++.||..+.+..+ | +.-.+.++++++.. ++.+.+...-
T Consensus 121 ~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-----------------~~d~~~v~~vr~~~~~~~l~vDaN~ 182 (324)
T TIGR01928 121 KAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-----------------QIMHQLVKLRRLRFPQIPLVIDANE 182 (324)
T ss_pred eEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-----------------chhHHHHHHHHHhCCCCcEEEECCC
Confidence 345555566678888776655 56679999988753 1 11135566666655 3556666666
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+|+.+++ ..++.+++.++.+| ++.- .+.|++.++++++.+++||.+.=.+.++.++..+++...+|.+.
T Consensus 183 ~~~~~~a-~~~~~l~~~~~~~i-------EeP~---~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~ 251 (324)
T TIGR01928 183 SYDLQDF-PRLKELDRYQLLYI-------EEPF---KIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVIN 251 (324)
T ss_pred CCCHHHH-HHHHHHhhCCCcEE-------ECCC---ChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 7887664 56888998887776 2111 13468889999999999999988999999999999987888886
Q ss_pred E
Q 023070 166 S 166 (287)
Q Consensus 166 i 166 (287)
+
T Consensus 252 ~ 252 (324)
T TIGR01928 252 I 252 (324)
T ss_pred e
Confidence 5
No 268
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=97.17 E-value=0.0046 Score=51.73 Aligned_cols=115 Identities=21% Similarity=0.321 Sum_probs=62.3
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
|++++ +|+-+|=.==--|......+ |-+-|.||..+.+|.++ +.+||..|.|+|.- . -|+.|+..|+|
T Consensus 27 AkIAE~AGA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~a----VsIPVMAK~RIGHf----v-EAqiLealgVD 95 (208)
T PF01680_consen 27 AKIAEEAGAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDA----VSIPVMAKVRIGHF----V-EAQILEALGVD 95 (208)
T ss_dssp HHHHHHHT-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH-----SSEEEEEEETT-H----H-HHHHHHHTT-S
T ss_pred HHHHHHhCCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHh----eEeceeecccccee----e-hhhhHHHhCCc
Confidence 44444 36444322223455544433 78889999999888876 47999999999863 2 27889999999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+|.=+-.-. ++|... .--|...++|+++ |-++.-.+.+-+.+ ||..+
T Consensus 96 ~IDESEVLT--------pAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI~E-GAaMI 142 (208)
T PF01680_consen 96 YIDESEVLT--------PADEEN-HIDKHNFKVPFVC--GARNLGEALRRIAE-GAAMI 142 (208)
T ss_dssp EEEEETTS----------S-SS-----GGG-SS-EEE--EESSHHHHHHHHHT-T-SEE
T ss_pred eeccccccc--------cccccc-cccchhCCCCeEe--cCCCHHHHHhhHHh-hhhhh
Confidence 997663211 233322 1223456889876 35677888877775 66543
No 269
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=97.15 E-value=0.002 Score=62.02 Aligned_cols=108 Identities=18% Similarity=0.276 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcC------CCCccccHHH-HHH
Q 023070 60 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNA-IKA 131 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~------~~~~~~~~~~-i~~ 131 (287)
.++-+.++|..+++.. ..+|+||+-.+..... ++--+.++++|.|+|.|-...... ...| .-|+. +..
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~---iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHGVGT---IAAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccchHH---HHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHHH
Confidence 4567888999998875 4679999866443222 222277899999999754322110 0111 12332 222
Q ss_pred HHhh-----C--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhh
Q 023070 132 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 172 (287)
Q Consensus 132 i~~~-----~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~ 172 (287)
..+. + ++-|++.||++|..|+..++. .|||.|-+|+++|-
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a-LGAd~v~~gTa~li 408 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAAA-LGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHHH-hCcchhhhchHHHH
Confidence 2221 1 477999999999999999998 69999999999864
No 270
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.15 E-value=0.0092 Score=53.68 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=79.9
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS 105 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~ 105 (287)
|++++ +|+-+|=.=---|......+ |-+-+++|+.+.+| ++.+++||.-+++.+. ..-++.+.++|+|
T Consensus 21 a~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~I----k~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvD 89 (283)
T cd04727 21 ARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEI----MDAVSIPVMAKVRIGH-----FVEAQILEALGVD 89 (283)
T ss_pred HHHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHH----HHhCCCCeEEeeehhH-----HHHHHHHHHcCCC
Confidence 44444 46544433224566553333 67778888876655 4456899999988755 4557889999999
Q ss_pred EEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 106 LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 106 ~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
.|.-+.|.+ +..+.+..+|...++|+++ |+.|.+++.+..+. |+|.|-
T Consensus 90 iIDaT~r~r---------P~~~~~~~iK~~~~~l~MA--D~stleEal~a~~~-Gad~I~ 137 (283)
T cd04727 90 MIDESEVLT---------PADEEHHIDKHKFKVPFVC--GARNLGEALRRISE-GAAMIR 137 (283)
T ss_pred EEeccCCCC---------cHHHHHHHHHHHcCCcEEc--cCCCHHHHHHHHHC-CCCEEE
Confidence 996443322 2356788888877777664 89999999999984 999764
No 271
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=97.14 E-value=0.0064 Score=57.11 Aligned_cols=43 Identities=19% Similarity=0.517 Sum_probs=37.6
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++|||+ .||.+++|+..+.+ .|||+|.++
T Consensus 210 ~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~-~Gvd~I~Vs 252 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 252 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHH-cCCCEEEEC
Confidence 45799999999999999988 55789999999998 699999875
No 272
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.13 E-value=0.0052 Score=55.52 Aligned_cols=91 Identities=16% Similarity=0.291 Sum_probs=61.5
Q ss_pred HHHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-----C
Q 023070 64 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 136 (287)
Q Consensus 64 ~~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~ 136 (287)
+.+.++.+++... .+|.|-++ +.+-++.+.++|+|.|-+.. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566666666542 45655432 33445566689999887542 234455554443 2
Q ss_pred CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 ~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++.|.++||| +++.+.++.+ +|+|.|.+|.....-|+
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~ 265 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATW 265 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 5669999999 9999999988 79999999986664554
No 273
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=97.11 E-value=0.0088 Score=56.21 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=76.7
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-e-ccCCCCcCCCCccccHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-H-GRTRDEKDGKKFRADWNAIKA 131 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h-~rt~~~~~~~~~~~~~~~i~~ 131 (287)
||..+.+.++ ++++. ..+.||.+|...+.+.++....++.+.+.|..-|++ | |.+.-+... ....|+..+..
T Consensus 208 ~s~~~~n~~L----L~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~-~~~ldl~~i~~ 281 (360)
T PRK12595 208 GARNMQNFEL----LKAAG-RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKAT-RNTLDISAVPI 281 (360)
T ss_pred CcccccCHHH----HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCC-CCCcCHHHHHH
Confidence 4555555444 33333 348999999776678889988899999999865554 5 443222111 22479999999
Q ss_pred HHhhCCCcEEEe-c---CCCCHH--HHHHHHHhcCccEEEEehhhhhCccch
Q 023070 132 VKNALRIPVLAN-G---NVRHME--DVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 132 i~~~~~ipVi~n-G---gI~s~~--da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
+++..++||+++ . |-++.. -+..++. .||||+||=+-+ ||...
T Consensus 282 lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 282 LKQETHLPVMVDVTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHHhCCCEEEeCCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCCC
Confidence 999889999994 2 322222 3444555 699999998877 77643
No 274
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=97.11 E-value=0.021 Score=53.39 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=90.5
Q ss_pred CCCEEEEecCCCH-HHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEec
Q 023070 8 DRPLFVQFCANDP-EILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIR 84 (287)
Q Consensus 8 ~~p~~~Qi~g~~~-~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR 84 (287)
..|+-..+...++ +++.+.++ .++.||..+.+..+ | +.-.+.++++++.+ ++.+.+..+
T Consensus 125 ~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g~~~l~lDaN 186 (354)
T cd03317 125 SIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFPDIPLMADAN 186 (354)
T ss_pred eEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCCCCeEEEECC
Confidence 3455445544443 66666554 56779999999763 1 12245567777665 345555555
Q ss_pred CCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 85 VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 85 ~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
-+|+..++. +++.+++.++.+| ++.- .+.|++..+++++.+++||.+.=.+.+++++..+++...+|.+
T Consensus 187 ~~~~~~~a~-~~~~l~~~~i~~i-------EeP~---~~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~ 255 (354)
T cd03317 187 SAYTLADIP-LLKRLDEYGLLMI-------EQPL---AADDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKII 255 (354)
T ss_pred CCCCHHHHH-HHHHhhcCCccEE-------ECCC---ChhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEE
Confidence 578877764 7888888887666 2211 1356888899999999999998889999999999997778888
Q ss_pred EE
Q 023070 165 LS 166 (287)
Q Consensus 165 mi 166 (287)
.+
T Consensus 256 ~i 257 (354)
T cd03317 256 NI 257 (354)
T ss_pred Ee
Confidence 76
No 275
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.10 E-value=0.0075 Score=56.57 Aligned_cols=111 Identities=13% Similarity=0.094 Sum_probs=72.8
Q ss_pred ccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HH
Q 023070 55 AFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 128 (287)
Q Consensus 55 ~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~ 128 (287)
+..+.+|+ ..+-++.+++.. +.||.+-+..... ..+..++.+.++..+++++.+|-..........+..++ +.
T Consensus 99 ~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~ 177 (352)
T PRK05437 99 RAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDN 177 (352)
T ss_pred HhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHH
Confidence 34456787 777777787765 8898887655211 11233455566677899999985322111111223345 57
Q ss_pred HHHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 129 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 129 i~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 178 i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~Vs 217 (352)
T PRK05437 178 IAEIVSALPVPVIVKEVGFGISKETAKRLAD-AGVKAIDVA 217 (352)
T ss_pred HHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH-cCCCEEEEC
Confidence 88888888999996 566677888887776 699999874
No 276
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.09 E-value=0.0042 Score=59.31 Aligned_cols=78 Identities=8% Similarity=0.082 Sum_probs=58.2
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHHHhhC---------CCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~---------~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+.++.+.|+|+|.+.+........ ...+.-|+.++++++.+ ++||++-||| +++++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 455667899999997654433221 22245677777766544 6999999999 6899999998 7999999
Q ss_pred EehhhhhCcc
Q 023070 166 SAESLLENPA 175 (287)
Q Consensus 166 iGR~~l~nP~ 175 (287)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986554
No 277
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.015 Score=51.89 Aligned_cols=142 Identities=15% Similarity=0.272 Sum_probs=87.6
Q ss_pred CCCEEEEecCC---CHHHHHHHH-----HHHcCCCCE--EEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh--cc
Q 023070 8 DRPLFVQFCAN---DPEILLNAA-----RRVEPYCDY--VDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL--NL 75 (287)
Q Consensus 8 ~~p~~~Qi~g~---~~~~~~~aA-----~~~~~g~d~--IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~--~~ 75 (287)
+.|+++++.++ .|+.+-++. ..+..|+|+ +-||+|+.. +.+.+.++.+.+.. ..
T Consensus 77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~--------------e~~~i~~~~~v~~~a~~~ 142 (265)
T COG1830 77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSET--------------EREMIENISQVVEDAHEL 142 (265)
T ss_pred CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcc--------------hHHHHHHHHHHHHHHHHc
Confidence 78999999987 333333222 234457776 556766544 24444444444322 34
Q ss_pred CCcEEEEecC-CCCh--------hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCC
Q 023070 76 NVPVSCKIRV-FPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 146 (287)
Q Consensus 76 ~~pv~vKiR~-g~~~--------~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI 146 (287)
+.|+.+=+-. |... +.+...++...+.|+|.|-+- + +-+-+.++++.+.+++||+..||=
T Consensus 143 Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~---------y--tg~~e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 143 GMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK---------Y--TGDPESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred CCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec---------C--CCChHHHHHHHHhCCCCEEEeCCC
Confidence 7888763322 2221 123344556688999998553 2 223377888888889999999997
Q ss_pred CC--HHHHH----HHHHhcCccEEEEehhhhhCcc
Q 023070 147 RH--MEDVQ----KCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 147 ~s--~~da~----~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.+ .+++. .+++ .|+.|+.+||-++..|.
T Consensus 212 k~~~~~~~l~~~~~ai~-aGa~G~~~GRNifQ~~~ 245 (265)
T COG1830 212 KTETEREFLEMVTAAIE-AGAMGVAVGRNIFQHED 245 (265)
T ss_pred CCCChHHHHHHHHHHHH-ccCcchhhhhhhhccCC
Confidence 65 44444 3444 49999999998876554
No 278
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=97.08 E-value=0.0036 Score=61.42 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc---EEEEehhhhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 172 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad---~VmiGR~~l~ 172 (287)
+....+.|+|+|.+.+-..........+..++.++++.+..++||++-|||. ++++.++++ +|++ +|.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~~-~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVME-SGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHHH-cCCCcCceEEEEeHHhc
Confidence 4556678999998754433222111124578999999888899999999995 899998888 6888 9999999985
Q ss_pred Ccc
Q 023070 173 NPA 175 (287)
Q Consensus 173 nP~ 175 (287)
.++
T Consensus 481 ~~d 483 (502)
T PLN02898 481 QED 483 (502)
T ss_pred CCC
Confidence 544
No 279
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.0084 Score=56.29 Aligned_cols=133 Identities=20% Similarity=0.198 Sum_probs=84.3
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhh
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~ 91 (287)
.-|+..+.+.+ +...++++|.|.|-|.-. . | +...-.++++-|++.. ...|... + --
T Consensus 244 AaiGTre~dK~-rl~ll~~aGvdvviLDSS--------q--G-----nS~~qiemik~iK~~yP~l~ViaG-----N-VV 301 (503)
T KOG2550|consen 244 AAIGTRDDDKE-RLDLLVQAGVDVVILDSS--------Q--G-----NSIYQLEMIKYIKETYPDLQIIAG-----N-VV 301 (503)
T ss_pred eccccccchhH-HHHHhhhcCCcEEEEecC--------C--C-----cchhHHHHHHHHHhhCCCceeecc-----c-ee
Confidence 44444444443 333356789998888621 1 1 2344567888888765 4555432 1 12
Q ss_pred HHHHHHHHHHcCCCEEEEecc------CCCCcCCCCccccHHH---HHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 92 TIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNA---IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~r------t~~~~~~~~~~~~~~~---i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+.+-++.|.++|+|.+-|--. |.+-. .-|.+.... +.+.+...++|||+.|||.+..++.++|. .||+
T Consensus 302 T~~qa~nLI~aGaDgLrVGMGsGSiCiTqevm--a~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAs 378 (503)
T KOG2550|consen 302 TKEQAANLIAAGADGLRVGMGSGSICITQKVM--ACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGAS 378 (503)
T ss_pred eHHHHHHHHHccCceeEeccccCceeeeceee--eccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCch
Confidence 345678888999999988422 22211 111222222 34555567999999999999999999998 5999
Q ss_pred EEEEehhh
Q 023070 163 GVLSAESL 170 (287)
Q Consensus 163 ~VmiGR~~ 170 (287)
.||+|--+
T Consensus 379 tVMmG~lL 386 (503)
T KOG2550|consen 379 TVMMGGLL 386 (503)
T ss_pred hheeccee
Confidence 99999533
No 280
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0019 Score=59.17 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
...++.+.++..|+..|.+.....++... ..|+++++.++.+++||||++.|-.+|+...+.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGsn~---GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGSNK---GYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCCCC---CcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 56799999999999999887776654322 4899999999999999999999999999999999999998764
No 281
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=97.06 E-value=0.0096 Score=52.77 Aligned_cols=143 Identities=20% Similarity=0.267 Sum_probs=90.8
Q ss_pred CCCEEEEe---cCCCHHHHHHHHHH-HcCCCCEEEEecc-CChhhhhcCcccccccCChHHHHHHHHHHhhcc---CCcE
Q 023070 8 DRPLFVQF---CANDPEILLNAARR-VEPYCDYVDINLG-CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL---NVPV 79 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~~-~~~g~d~IdiN~g-cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~---~~pv 79 (287)
+.|+++-+ +|++|..+.+.++. .+.|+.+|.|.=. |. .-|..+. .++...+=|++++++. ++-|
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I 140 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVI 140 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence 46777766 46679999999985 5679999999865 32 1234445 4555555455554432 4555
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHH
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~ 155 (287)
..+.-.. ...+++++=++.+.++|+|.|-+++.. +.+.++++.+.++.|+.++-+ ...-++.++
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL 208 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------SEEEIERIVKAVDGPLNVNPG-PGTLSAEEL 208 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------SHHHHHHHHHHHSSEEEEETT-SSSS-HHHH
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHHhcCCCEEEEcC-CCCCCHHHH
Confidence 5554332 245677888888999999999998652 235578888888899887764 222455555
Q ss_pred HHhcCccEEEEehhhh
Q 023070 156 LEETGCEGVLSAESLL 171 (287)
Q Consensus 156 l~~~gad~VmiGR~~l 171 (287)
-+ .|+..|.+|-.++
T Consensus 209 ~~-lGv~~v~~~~~~~ 223 (238)
T PF13714_consen 209 AE-LGVKRVSYGNSLL 223 (238)
T ss_dssp HH-TTESEEEETSHHH
T ss_pred HH-CCCcEEEEcHHHH
Confidence 55 6999999886554
No 282
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.06 E-value=0.013 Score=52.66 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCCEEEEecCCCHH--------HHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc
Q 023070 8 DRPLFVQFCANDPE--------ILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP 78 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~--------~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p 78 (287)
..|+|.-+-..+|. +..+.|+.. +.|+++|-++. ....||+. .+.+.++++.+++|
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlt-------e~~~f~g~--------~~~l~~v~~~v~iP 113 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLT-------DERFFQGS--------LEYLRAARAAVSLP 113 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEec-------ccccCCCC--------HHHHHHHHHhcCCC
Confidence 36888888665554 236666644 45899997752 23334544 35666777778999
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
|..|--+ .+.. -+..+.++|+|+|++.+.... ...+..+-+..+..++.+++ .+.+.+++.++.+
T Consensus 114 vl~kdfi----~~~~-qi~~a~~~GAD~VlLi~~~l~-------~~~l~~li~~a~~lGl~~lv--evh~~~E~~~A~~- 178 (260)
T PRK00278 114 VLRKDFI----IDPY-QIYEARAAGADAILLIVAALD-------DEQLKELLDYAHSLGLDVLV--EVHDEEELERALK- 178 (260)
T ss_pred EEeeeec----CCHH-HHHHHHHcCCCEEEEEeccCC-------HHHHHHHHHHHHHcCCeEEE--EeCCHHHHHHHHH-
Confidence 9987311 2233 466778999999999877532 12233333333335654444 5889999998887
Q ss_pred cCccEEEEe
Q 023070 159 TGCEGVLSA 167 (287)
Q Consensus 159 ~gad~VmiG 167 (287)
.|+|.+.+.
T Consensus 179 ~gadiIgin 187 (260)
T PRK00278 179 LGAPLIGIN 187 (260)
T ss_pred cCCCEEEEC
Confidence 599988863
No 283
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.05 E-value=0.011 Score=54.07 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=66.9
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHH
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l 156 (287)
.|+.+.+-...+.+...+.++.+++.|++.|.+|....... . ...|+.++++++.+++||++- ++.+++++..+.
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a~ 190 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRAV 190 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHHH
Confidence 67777775544667777888888999999999986544321 1 257899999999999999985 478999999888
Q ss_pred HhcCccEEEEe
Q 023070 157 EETGCEGVLSA 167 (287)
Q Consensus 157 ~~~gad~VmiG 167 (287)
+ .|+|+|.+.
T Consensus 191 ~-~G~d~I~v~ 200 (299)
T cd02809 191 D-AGADGIVVS 200 (299)
T ss_pred H-CCCCEEEEc
Confidence 7 699999774
No 284
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.05 E-value=0.017 Score=50.36 Aligned_cols=151 Identities=11% Similarity=0.072 Sum_probs=87.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChh--hhh--cCccc-----ccccCChHHHH------------
Q 023070 8 DRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQR--IAR--RGNYG-----AFLMDNLPLVK------------ 65 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~--~~~--~~~~G-----~~l~~~~~~~~------------ 65 (287)
+.+++.=+.+.++++..+.++.+ +.|++.|||-+-.|.. ..+ +..|+ +...-+++.+.
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 46788889999999999999965 4589999998765541 111 01111 11112222222
Q ss_pred -----HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 66 -----SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 66 -----~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
++++..++ .++|+.- | ..+.-| +..+.++|++.+-+.+-... ....+++.++.-. ++|
T Consensus 94 P~~~~~vi~~a~~-~~i~~iP----G--~~TptE-i~~a~~~Ga~~vKlFPa~~~--------gg~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLIP----G--VSTPSE-LMLGMELGLRTFKFFPAEAS--------GGVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEeC----C--CCCHHH-HHHHHHCCCCEEEEccchhc--------cCHHHHHHHhccCCCCe
Confidence 22222111 1122210 1 112223 45567888888888532110 0246777777654 699
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
++..|||. ++++.+.++. | +.+.+|.+.+.++.+.
T Consensus 158 ~~ptGGV~-~~ni~~~l~a-g-~v~~vggs~L~~~~~~ 192 (212)
T PRK05718 158 FCPTGGIS-PANYRDYLAL-P-NVLCIGGSWMVPKDAI 192 (212)
T ss_pred EEEeCCCC-HHHHHHHHhC-C-CEEEEEChHhCCcchh
Confidence 99999995 5999999985 6 4455555666554443
No 285
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=97.04 E-value=0.019 Score=55.43 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=89.2
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~ 95 (287)
+|+++++-|+ .++ .||..+.|..|-+ +++.-.+.++++++.+ ++.+.+...-+|+.++++.+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~ 244 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSLDEAIAL 244 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHH
Confidence 5777766554 454 5999999976521 2344466677777765 46677777778999999999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.+++. +.+| ++.-. +.| ++.++++++.+++||.+.-.+.++.++..+++...+|.++.
T Consensus 245 ~~~Le~~-~~~i-------EePv~---~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~ 308 (441)
T TIGR03247 245 CKDLKGV-LAYA-------EDPCG---AEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLA 308 (441)
T ss_pred HHHhhhh-hceE-------eCCCC---cccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEec
Confidence 9999986 5433 22111 223 78899999999999999888999999999999877888653
No 286
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.03 E-value=0.011 Score=53.22 Aligned_cols=111 Identities=15% Similarity=0.237 Sum_probs=73.4
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCC-ccccHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~-~~~~~~~i~ 130 (287)
-||..+.+.+++.++ ...+.||.+|-....+.++....++.+...|-.-+++ |..++.. ..|+ ...|+..+.
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~-~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTF-ETYTRNTLDLAAVA 189 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCC-CCCCHHHHHHHHHH
Confidence 345555554444433 2458999999777667888888899999999866544 4322111 1221 235788888
Q ss_pred HHHhhCCCcEEE-ecCCCC-----HHHHHHHHHhcCccEEEEehhh
Q 023070 131 AVKNALRIPVLA-NGNVRH-----MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 131 ~i~~~~~ipVi~-nGgI~s-----~~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++..++||++ ..-... +..+..++. .||||+||=+-+
T Consensus 190 ~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva-~Ga~Gl~iE~H~ 234 (266)
T PRK13398 190 VIKELSHLPIIVDPSHATGRRELVIPMAKAAIA-AGADGLMIEVHP 234 (266)
T ss_pred HHHhccCCCEEEeCCCcccchhhHHHHHHHHHH-cCCCEEEEeccC
Confidence 888888999998 343333 555666666 599999987544
No 287
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.00 E-value=0.032 Score=50.82 Aligned_cols=101 Identities=24% Similarity=0.336 Sum_probs=66.0
Q ss_pred HHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCC-----CCccccHHHHHHHHhhCCCc
Q 023070 65 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-----KKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~-----~~~~~~~~~i~~i~~~~~ip 139 (287)
.+.+...++..+.|+.+-++ +.+.++..+.++.++++|+|+|.+|-........ .....-.+.++.+++.+++|
T Consensus 78 ~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 78 LEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCC
Confidence 33333344445788888875 4556888999999999999999997443321110 00011235677888888899
Q ss_pred EE--EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VL--ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi--~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+ .+.++.+..++.+.+.+.|+|++.+
T Consensus 157 v~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 157 VIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 88 4455555666666666689999865
No 288
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=97.00 E-value=0.039 Score=51.48 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=77.5
Q ss_pred HHcCCCCEEEEeccCChhhhhcCccccccc-----CChHHHHHHHHHHhhccCCcEEEEe--c-CCC-----------Ch
Q 023070 29 RVEPYCDYVDINLGCPQRIARRGNYGAFLM-----DNLPLVKSLVEKLALNLNVPVSCKI--R-VFP-----------NL 89 (287)
Q Consensus 29 ~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~-----~~~~~~~~iv~~v~~~~~~pv~vKi--R-~g~-----------~~ 89 (287)
+++.|+|+|-+++- ||+.-. .....+.++.++.+ ..++|+.+=+ . .+. +.
T Consensus 115 a~~~GAdAVk~lv~----------~~~d~~~~~~~~~~~~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~p 183 (340)
T PRK12858 115 IKEAGADAVKLLLY----------YRPDEDDAINDRKHAFVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVKP 183 (340)
T ss_pred HHHcCCCEEEEEEE----------eCCCcchHHHHHHHHHHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccCH
Confidence 45679999888742 332100 11223444444433 3489987742 1 111 22
Q ss_pred hhHHHHHHHHHH--cCCCEEEEec-c---CCCCcC----CCCccccHHHHHHHHhhCCCcEEE-ecCCCCHHHHHHHHH-
Q 023070 90 QDTIKYAKMLED--AGCSLLAVHG-R---TRDEKD----GKKFRADWNAIKAVKNALRIPVLA-NGNVRHMEDVQKCLE- 157 (287)
Q Consensus 90 ~~~~~~a~~l~~--~G~~~I~vh~-r---t~~~~~----~~~~~~~~~~i~~i~~~~~ipVi~-nGgI~s~~da~~~l~- 157 (287)
+.....++.+.+ .|+|.+-+-- . ..++.. .++...-.+.++++.+.+++|++. +||+ +.+++.+.++
T Consensus 184 ~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~ 262 (340)
T PRK12858 184 EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEF 262 (340)
T ss_pred HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHH
Confidence 345567777884 9999997631 1 111100 011011125677778888999765 7887 6676665553
Q ss_pred --hcCc--cEEEEehhhhhCcc
Q 023070 158 --ETGC--EGVLSAESLLENPA 175 (287)
Q Consensus 158 --~~ga--d~VmiGR~~l~nP~ 175 (287)
+.|+ .||.+||....++-
T Consensus 263 A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 263 ACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHcCCCccchhhhHHHHhhhh
Confidence 2689 99999999887655
No 289
>PRK02227 hypothetical protein; Provisional
Probab=96.97 E-value=0.054 Score=47.74 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l 99 (287)
-+..+|...++.|+|.||+- +-..|.-| -+.|..+.+|+..+... .|||..+.=.+ +......-+..+
T Consensus 8 r~~eEA~~Al~~GaDiIDvK------~P~~GaLG---A~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~ 76 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVK------NPKEGSLG---ANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGA 76 (238)
T ss_pred CCHHHHHHHHhcCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHH
Confidence 34456666677899999995 22233333 35677788888877643 68998864222 233344445556
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH----hh-CCCcEEEecCCC-------CHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK----NA-LRIPVLANGNVR-------HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~----~~-~~ipVi~nGgI~-------s~~da~~~l~~~gad~VmiG 167 (287)
..+|+|+|-|- ..... .. ...++.++.+. .. .+..|++.+--. ++.++.....+.|++++|+-
T Consensus 77 a~~GvDyVKvG-l~~~~--~~--~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlD 151 (238)
T PRK02227 77 AATGADYVKVG-LYGGK--TA--EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLD 151 (238)
T ss_pred HhhCCCEEEEc-CCCCC--cH--HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEe
Confidence 77999999873 11110 00 12234443332 22 246677665222 56777778877899999997
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 215 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (287)
++.=..-.+|..+. .+.+.+|++.+..++
T Consensus 152 Ta~Kdg~~Lfd~l~-------------------~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 152 TAIKDGKSLFDHMD-------------------EEELAEFVAEARSHG 180 (238)
T ss_pred cccCCCcchHhhCC-------------------HHHHHHHHHHHHHcc
Confidence 76555555554331 345778888777766
No 290
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.95 E-value=0.048 Score=48.48 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=76.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+...|-..|.+.-|-..- ++. ...|+..+..+
T Consensus 99 gArn~rn~~LL----~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf--~y~r~~~D~~~ip~~ 171 (258)
T TIGR01362 99 PAFLCRQTDLL----VAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSF--GYNNLVVDMRSLPIM 171 (258)
T ss_pred CchhcchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc--CCCCcccchhhhHHH
Confidence 67777777554 44443 489999997777888899999999999999999887664421 221 13577778878
Q ss_pred HhhCCCcEEEe---------------cCCCCHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN---------------GNVRHME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n---------------GgI~s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++. +.|||.- ||.++.- -+...+. .|+||+||= .--||.
T Consensus 172 k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA-~GaDGl~iE--vHpdP~ 227 (258)
T TIGR01362 172 REL-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVA-VGIDGLFME--THPDPK 227 (258)
T ss_pred Hhc-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH-hCCCEEEEE--eCCCcc
Confidence 775 8999953 4544322 2334455 699999995 334554
No 291
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=96.95 E-value=0.071 Score=46.81 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l 99 (287)
-+..+|...++.|+|.||+- +-..|.-|+ ..|..+.+|++.+.. ..|||.-+.=.+ ........+...
T Consensus 8 ~~~~EA~~a~~~gaDiID~K------~P~~GaLGA---~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~ 76 (235)
T PF04476_consen 8 RNVEEAEEALAGGADIIDLK------NPAEGALGA---LFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGA 76 (235)
T ss_pred CCHHHHHHHHhCCCCEEEcc------CCCCCCCCC---CCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHH
Confidence 34556666677899999995 223333443 456777777666533 389998864322 333333334445
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHH----HhhC-CCcEEEec--CC-----CCHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KNAL-RIPVLANG--NV-----RHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i----~~~~-~ipVi~nG--gI-----~s~~da~~~l~~~gad~VmiG 167 (287)
...|+++|-|-=-... .. ....+.++.+ +..- +..|++.+ |- -++-++.+...+.|++++|+-
T Consensus 77 a~~GvdyvKvGl~g~~---~~--~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlD 151 (235)
T PF04476_consen 77 AATGVDYVKVGLFGCK---DY--DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLD 151 (235)
T ss_pred HhcCCCEEEEecCCCC---CH--HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEe
Confidence 6789999988411000 00 1112333333 3321 34566665 22 245677777777899999999
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 215 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (287)
++.=....+|..+. .+.+.+|++.+..++
T Consensus 152 Ta~Kdg~~L~d~~~-------------------~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 152 TADKDGGSLFDHLS-------------------EEELAEFVAQARAHG 180 (235)
T ss_pred cccCCCCchhhcCC-------------------HHHHHHHHHHHHHcc
Confidence 88777777776432 245777887777765
No 292
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.95 E-value=0.0096 Score=55.23 Aligned_cols=94 Identities=23% Similarity=0.293 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
++...+.++.++....+.+. .+.+ .+..+.++.+.++|++.|.+...... + ..-++.++++++.. ++|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~----~~~~-~~~~~~~~~l~eagv~~I~vd~~~G~-----~-~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAA----VGTR-EDDKERAEALVEAGVDVIVIDSAHGH-----S-VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEe----cCCC-hhHHHHHHHHHhcCCCEEEEECCCCC-----c-HHHHHHHHHHHHHCCCce
Confidence 34455566666543222222 2322 45567888889999999988642211 0 12357788888875 488
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
|++ |.+.|++++..+++ .|||+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~-aGaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLID-AGADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHh-cCCCEEEEC
Confidence 887 99999999999988 699999984
No 293
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.94 E-value=0.047 Score=49.87 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=90.9
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEE
Q 023070 7 EDRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~v 81 (287)
.+.||++-+ +|+.++ ..+.++ ..+.|+.+|.|-=... ..+.+..++.-+-.++...+-|++++++. +.++.+
T Consensus 76 ~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~--pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I 152 (294)
T TIGR02319 76 VDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN--PKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTI 152 (294)
T ss_pred cCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC--ccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 357888776 355555 566666 4567999999974321 12233333432334444444444444432 334544
Q ss_pred EecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcE---EEecCCCCHHHHHH
Q 023070 82 KIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV---LANGNVRHMEDVQK 154 (287)
Q Consensus 82 KiR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipV---i~nGgI~s~~da~~ 154 (287)
=-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.++.|+ +..||-.-.-++.+
T Consensus 153 ~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-----------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~e 221 (294)
T TIGR02319 153 IARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-----------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKE 221 (294)
T ss_pred EEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC-----------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHH
Confidence 4444 345678888899999999999999852 23467888888888787 34443322223444
Q ss_pred HHHhcCccEEEEehhhh
Q 023070 155 CLEETGCEGVLSAESLL 171 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l 171 (287)
+-+ .|++.|..+-.++
T Consensus 222 L~~-lG~~~v~~~~~~~ 237 (294)
T TIGR02319 222 LES-IGYNLAIYPLSGW 237 (294)
T ss_pred HHH-cCCcEEEEcHHHH
Confidence 444 6999999985554
No 294
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.94 E-value=0.021 Score=49.51 Aligned_cols=149 Identities=14% Similarity=0.165 Sum_probs=82.6
Q ss_pred CCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC
Q 023070 9 RPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN 88 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~ 88 (287)
.++.+-+=-.+.++..+.++.+....++|+++..+=. .+| .++++.+++...+++.+|+-.-
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l~~------~~G----------~~~v~~ir~~~~i~~D~k~~di-- 65 (215)
T PRK13813 4 SRIILALDVTDRERALKIAEELDDYVDAIKVGWPLVL------ASG----------LGIIEELKRYAPVIADLKVADI-- 65 (215)
T ss_pred CCEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHHHH------hhC----------HHHHHHHHhcCCEEEEeecccc--
Confidence 3455555334444444444433334678888742211 122 3566777766677777886411
Q ss_pred hhhHHHHHHHHHHcCCCEEEEeccCCCC-------------c--------CC----------------------CCc---
Q 023070 89 LQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K--------DG----------------------KKF--- 122 (287)
Q Consensus 89 ~~~~~~~a~~l~~~G~~~I~vh~rt~~~-------------~--------~~----------------------~~~--- 122 (287)
......+++.+.++|+|++++|.-.... . .. ..+
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 1122334577778999999998643100 0 00 000
Q ss_pred -cccHHHHHHHHhhCCCc-EEEecCCCCH-HHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 123 -RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 123 -~~~~~~i~~i~~~~~ip-Vi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
....+.++++++..+-+ .+..|||+.. .++..+++ .|+|++.+||+++..++.
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~-aGad~iV~Gr~I~~~~d~ 201 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIK-AGADYVIVGRSIYNAADP 201 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHH-cCCCEEEECcccCCCCCH
Confidence 01123344555544332 3477999863 24677777 699999999998876653
No 295
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.93 E-value=0.0065 Score=54.04 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=78.5
Q ss_pred HHHHHHHhhccCCcEEEEecC------------C----------CChhhHHHHHHHHHHcCCCEE-EEeccCC-------
Q 023070 65 KSLVEKLALNLNVPVSCKIRV------------F----------PNLQDTIKYAKMLEDAGCSLL-AVHGRTR------- 114 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~------------g----------~~~~~~~~~a~~l~~~G~~~I-~vh~rt~------- 114 (287)
.+.++.++..+.+||-+|==+ | .+.++..+++....+.|.+.+ -||...-
T Consensus 96 ~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ 175 (254)
T COG0134 96 FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKL 175 (254)
T ss_pred HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhC
Confidence 355567777889999888422 2 122345566666677777665 4553210
Q ss_pred -------CCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccchhch
Q 023070 115 -------DEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 180 (287)
Q Consensus 115 -------~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf~~~ 180 (287)
+.+.-.+...|++...++.... +..+|.-+||.+++|+.++.. .|+|++.||.++|.+++....+
T Consensus 176 ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~-~ga~a~LVG~slM~~~~~~~a~ 249 (254)
T COG0134 176 GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAK-AGADAFLVGEALMRADDPEEAL 249 (254)
T ss_pred CCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHH-cCCCEEEecHHHhcCCCHHHHH
Confidence 0001112246778777887765 377899999999999998888 6999999999999999875433
No 296
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.91 E-value=0.058 Score=48.51 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=77.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+.+.|...|.+.-|-....+. ....|+..+..++
T Consensus 113 gAr~~rntdLL----~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~-~~~~D~~~ip~mk 186 (281)
T PRK12457 113 PAFLARQTDLV----VAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD-NLVVDMLGFRQMK 186 (281)
T ss_pred CchhhchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC-CcccchHHHHHHH
Confidence 67777776554 44433 479999997666788889999999999999999887664432222 1246888888888
Q ss_pred hh-CCCcEEEe---------------cCCCCH--HHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 134 NA-LRIPVLAN---------------GNVRHM--EDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 134 ~~-~~ipVi~n---------------GgI~s~--~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+. +++|||.- ||.+.. .-+...+. .|+||+|+= .--||.
T Consensus 187 ~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA-~GaDGl~iE--vHpdP~ 243 (281)
T PRK12457 187 RTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMA-VGLAGLFLE--AHPDPD 243 (281)
T ss_pred hhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE--ecCCcc
Confidence 85 68999953 444322 22344454 699999995 334554
No 297
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.91 E-value=0.033 Score=50.54 Aligned_cols=161 Identities=18% Similarity=0.274 Sum_probs=95.0
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ .++. .+ -|-||+ .|+. ...-+.||.|-+. ++.+..++
T Consensus 41 ~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~v-PV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (283)
T PRK07998 41 SGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDV-PVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAALPFEENIAFTKE 119 (283)
T ss_pred hCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCC-CEEEECcCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 357999998442 3344554444 2332 33 244553 2332 1222445554433 23344555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 135 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 135 (287)
+++... ..+++|-.-+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+.. ...|++.++++++.
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~ 197 (283)
T PRK07998 120 AVDFAK-SYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEV 197 (283)
T ss_pred HHHHHH-HcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHHHHHHHHhh
Confidence 555443 246666444322 11 0 12444555556789999997754444333322 24689999999999
Q ss_pred CCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 136 LRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 136 ~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+++|++.-||=..+ +++.++++ .|+..|=|++.+.
T Consensus 198 ~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~Tel~ 233 (283)
T PRK07998 198 SPVPLVIHGGSGIPPEILRSFVN-YKVAKVNIASDLR 233 (283)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHH-cCCcEEEECHHHH
Confidence 99999988875555 66777877 6999999998764
No 298
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.90 E-value=0.014 Score=54.22 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=70.9
Q ss_pred ccccCChHHHHHHHHHHhh-ccCCcEEEEecCCCChh-hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HH
Q 023070 55 AFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NA 128 (287)
Q Consensus 55 ~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~g~~~~-~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~ 128 (287)
+..+.+|+..... ..+++ ..++|+.+-+....... ...++.+.++..+++++.+|--.........+..++ +.
T Consensus 92 ~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~ 170 (333)
T TIGR02151 92 RAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEK 170 (333)
T ss_pred hhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHH
Confidence 3345688876666 77776 56899988765421111 134455556666788888874321111111122344 67
Q ss_pred HHHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 129 IKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 129 i~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++.+++||++ +|.-.+.+.+..+.+ .|+|+|-++
T Consensus 171 i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~-aGvd~I~Vs 210 (333)
T TIGR02151 171 IAEICSQLSVPVIVKEVGFGISKEVAKLLAD-AGVSAIDVA 210 (333)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 88899988999986 455578888876666 699999886
No 299
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.037 Score=50.76 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=84.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+|+|=++- .-|-+..-..+.=.++++.+++.+ .+||.+-+.. .+..++++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~G----------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~ 90 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLG----------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIE 90 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHH
Confidence 47788888777 5677999999982 234444455666677777777766 3788877532 34688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++-+..-...... ...-++.++.+.+++++||| +| |---+++.+.++-+
T Consensus 91 lak~a~~~Gad~il~v~PyY~k~~---~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 91 LAKHAEKLGADGILVVPPYYNKPS---QEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCC---hHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 999999999999988644322111 12335667778888888865 45 44456666655554
No 300
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.90 E-value=0.02 Score=50.84 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=85.7
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcCC
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGC 104 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G~ 104 (287)
|++++ .|||+|=+-=.+-. .. -++-..-+-..+.+...++.|...+.+||++.+..|. +..+..+.++.+.+.|+
T Consensus 22 A~~~e~~G~~ai~~s~~~~~-~s--~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVA-AS--LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHHHH-Hh--cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 44444 48998877521111 11 1222223345677788888888888999999998875 34567788999999999
Q ss_pred CEEEEeccCCCCcCC-------CCccccHHHHHHHHhh----CCCcEEEecC---C--CCHHHHHHHH---HhcCccEEE
Q 023070 105 SLLAVHGRTRDEKDG-------KKFRADWNAIKAVKNA----LRIPVLANGN---V--RHMEDVQKCL---EETGCEGVL 165 (287)
Q Consensus 105 ~~I~vh~rt~~~~~~-------~~~~~~~~~i~~i~~~----~~ipVi~nGg---I--~s~~da~~~l---~~~gad~Vm 165 (287)
++|.+-+.....+.+ .+.....+.|+.+++. .+++|++--+ + .+.+++.+.. .+.|||+|+
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 999995443221111 0001112334444443 2466666522 2 3455554332 336999999
Q ss_pred EehhhhhCccchhchh
Q 023070 166 SAESLLENPALFAGFR 181 (287)
Q Consensus 166 iGR~~l~nP~lf~~~~ 181 (287)
+=-. .++.-++++.
T Consensus 179 v~~~--~~~~~~~~~~ 192 (243)
T cd00377 179 VEGL--KDPEEIRAFA 192 (243)
T ss_pred eCCC--CCHHHHHHHH
Confidence 8422 2555555443
No 301
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=96.89 E-value=0.031 Score=52.26 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=76.3
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCCcCCCC-ccccHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKK-FRADWNAIK 130 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~~~~~~-~~~~~~~i~ 130 (287)
-|+..+.+.+++. ++. ..+.||.+|-....+.++....++.+.+.|..-|++ |..++.-...|+ ...||..+.
T Consensus 190 Iga~~~~n~~LL~----~va-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~ 264 (352)
T PRK13396 190 VGARNMQNFSLLK----KVG-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIP 264 (352)
T ss_pred ECcccccCHHHHH----HHH-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHH
Confidence 4777888877644 443 248999999877778899999999999999876655 543322111222 357999999
Q ss_pred HHHhhCCCcEEEec----CCCC--HHHHHHHHHhcCccEEEEeh
Q 023070 131 AVKNALRIPVLANG----NVRH--MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 131 ~i~~~~~ipVi~nG----gI~s--~~da~~~l~~~gad~VmiGR 168 (287)
.+++..++|||++- |.++ +.-+..++. .||||+||=+
T Consensus 265 ~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva-~GAdGliIE~ 307 (352)
T PRK13396 265 VLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIA-AGTDSLMIEV 307 (352)
T ss_pred HHHHhhCCCEEECCcccCCcHHHHHHHHHHHHh-hCCCeEEEEe
Confidence 99988899998762 3322 233444554 6999999864
No 302
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.89 E-value=0.036 Score=50.35 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=94.0
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHH-HcC-CCCEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARR-VEP-YCDYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~-~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. +.+.+...++. ++. .+ -|-||+ .|.. ....+.||.|-+.+ +.+..++
T Consensus 39 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~ 117 (282)
T TIGR01858 39 MRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNM-PLALHLDHHESLDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKE 117 (282)
T ss_pred hCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHH
Confidence 357999999652 34555555553 332 33 255664 2333 12334556554432 3344555
Q ss_pred HHHHHhhccCCcEEEEecC--C-CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--F-PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g-~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++..+. .+++|-.=+.- | .+ ..++.+..+.+++.|+|.+.|.=+|.-+.+......||+.+++++
T Consensus 118 vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~ 196 (282)
T TIGR01858 118 VVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIR 196 (282)
T ss_pred HHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHH
Confidence 5554432 35555443321 1 00 123344444556899999977544443333333358999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 197 ~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 234 (282)
T TIGR01858 197 EVVDVPLVLHGASDVPDEDVRRTIE-LGICKVNVATELK 234 (282)
T ss_pred HHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 9999999988865444 55666776 6999998887663
No 303
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=96.88 E-value=0.014 Score=55.17 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=38.2
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.|+.+++..++|||+ .||.|.+|+..+++ .|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~-~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVR-FGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHh-CCCCEEEEC
Confidence 46899999999999999888 66899999999998 699999875
No 304
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.86 E-value=0.073 Score=48.61 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=95.1
Q ss_pred CCCCEEEEecC--CCHHHHHHHHHH-HcCCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEE
Q 023070 7 EDRPLFVQFCA--NDPEILLNAARR-VEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSC 81 (287)
Q Consensus 7 ~~~p~~~Qi~g--~~~~~~~~aA~~-~~~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~v 81 (287)
.+.|+++-+=+ .+|..+.+..+. .+.|+.+|.|==.. |. +.+..++.-+-.++...+-|++++++. +.++.+
T Consensus 77 ~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~I 153 (292)
T PRK11320 77 CDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVI 153 (292)
T ss_pred cCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEE
Confidence 35688877733 289999998885 56799999996432 22 223333332334554454555554433 455555
Q ss_pred EecC----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE---ecCCCCHHHHHH
Q 023070 82 KIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA---NGNVRHMEDVQK 154 (287)
Q Consensus 82 KiR~----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~---nGgI~s~~da~~ 154 (287)
=-|+ ....+++++=++...++|+|.|-+++- .+.+.++++.+.+++|+.+ ++|-.-.-++.+
T Consensus 154 iARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~ 222 (292)
T PRK11320 154 MARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADAVKVPILANITEFGATPLFTTEE 222 (292)
T ss_pred EEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH
Confidence 5554 234678888899999999999999853 2457788888888889844 333221112333
Q ss_pred HHHhcCccEEEEehhhh
Q 023070 155 CLEETGCEGVLSAESLL 171 (287)
Q Consensus 155 ~l~~~gad~VmiGR~~l 171 (287)
+- +.|+..|..|-.++
T Consensus 223 L~-~lGv~~v~~~~~~~ 238 (292)
T PRK11320 223 LA-SAGVAMVLYPLSAF 238 (292)
T ss_pred HH-HcCCcEEEEChHHH
Confidence 33 46999999986554
No 305
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.86 E-value=0.032 Score=46.96 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=81.0
Q ss_pred CHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC---ChhhHHH
Q 023070 19 DPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~---~~~~~~~ 94 (287)
|.+.+.+.++. ++.|+++|.++. +.+..+.+.+... ++|+.+++.... ..+++.+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 78888888884 567999999983 2333333332210 489998876532 1478889
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEE-e-cCCC-CHHHHHHH---HHhcCccEEEE
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-N-GNVR-HMEDVQKC---LEETGCEGVLS 166 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~-n-GgI~-s~~da~~~---l~~~gad~Vmi 166 (287)
.++.+.+.|++++.++.-....... ....-.+.++++.+.+ ++||+. | -+.. +++...++ +...|+|+|=.
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~ 148 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSLKEG-DWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKT 148 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHHhCC-CHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 9999999999999887422110000 0012256677888774 788764 2 2222 66666554 34568999876
Q ss_pred ehh
Q 023070 167 AES 169 (287)
Q Consensus 167 GR~ 169 (287)
..+
T Consensus 149 ~~~ 151 (201)
T cd00945 149 STG 151 (201)
T ss_pred CCC
Confidence 554
No 306
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.86 E-value=0.016 Score=54.82 Aligned_cols=43 Identities=19% Similarity=0.566 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+|+.++.+++..++||+.- ||.+.+|+..+++ .|+|+|.++
T Consensus 239 ~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~-~G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVE-AGVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHH-CCCCEEEEc
Confidence 357999999999999999885 7899999999998 599999986
No 307
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.84 E-value=0.013 Score=54.83 Aligned_cols=41 Identities=20% Similarity=0.428 Sum_probs=36.9
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+|+.++.+++..++||++-| |.+++|+..+.+ .|+|+|.+
T Consensus 208 ~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~-~G~d~I~v 248 (351)
T cd04737 208 LSPADIEFIAKISGLPVIVKG-IQSPEDADVAIN-AGADGIWV 248 (351)
T ss_pred CCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHH-cCCCEEEE
Confidence 579999999999999999875 899999998888 69999988
No 308
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=96.84 E-value=0.017 Score=50.98 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=47.2
Q ss_pred CEEEEecCCCHHHHHHHHHHHcC---CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecC
Q 023070 10 PLFVQFCANDPEILLNAARRVEP---YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRV 85 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~---g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~ 85 (287)
++++-+ |..++.++.+.++. ..+.|+++.+.=. .+| .++++.+++. ..+++.+|+
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~f~------~~G----------~~~i~~l~~~~~~i~~D~Kl-- 62 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMELFT------AGG----------PQFVRELKQRGFKVFLDLKL-- 62 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHHHH------hcC----------HHHHHHHHhcCCCEEEEeeh--
Confidence 455554 55555566665543 4678888753111 122 3446666654 456666664
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEec
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHG 111 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~ 111 (287)
..-.......++.+.+.|++++|||+
T Consensus 63 ~Di~~t~~~~i~~~~~~gad~itvH~ 88 (230)
T PRK00230 63 HDIPNTVAKAVRALAKLGVDMVNVHA 88 (230)
T ss_pred hhccccHHHHHHHHHHcCCCEEEEcc
Confidence 22222344567778899999999996
No 309
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=96.83 E-value=0.081 Score=49.13 Aligned_cols=132 Identities=16% Similarity=0.232 Sum_probs=92.5
Q ss_pred CEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~ 87 (287)
|+...+...+++.+.+.++.. .|+..+.+..|-+ | .+++.-.+.++++++.+ ++.+.+..+-+|
T Consensus 80 p~~~tv~~~~~e~~~~~~~~~-~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~w 145 (327)
T PRK02901 80 PVNATVPAVDAAQVPEVLARF-PGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGW 145 (327)
T ss_pred EeeEEeCCCCHHHHHHHHHHh-CCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 344444444666544443322 4777777776511 1 24555567777787776 466667767789
Q ss_pred ChhhHHHHHHHH-HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l-~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++++.+++.+ ++.++.+| ++. - .+++.++.+++.+++||.+.=.+++..|..++++..++|.+++
T Consensus 146 s~~~Ai~~~~~L~e~~~l~~i-------EqP----~-~~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 146 SVDEAVAAARALDADGPLEYV-------EQP----C-ATVEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CHHHHHHHHHHhhhccCceEE-------ecC----C-CCHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999 67777766 211 1 2367788899999999999888999999999999888999887
Q ss_pred e
Q 023070 167 A 167 (287)
Q Consensus 167 G 167 (287)
-
T Consensus 214 k 214 (327)
T PRK02901 214 K 214 (327)
T ss_pred C
Confidence 4
No 310
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.82 E-value=0.015 Score=52.95 Aligned_cols=95 Identities=14% Similarity=0.325 Sum_probs=58.9
Q ss_pred HHHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHH-HHHHHh-hCCCc
Q 023070 64 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA-IKAVKN-ALRIP 139 (287)
Q Consensus 64 ~~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~-i~~i~~-~~~ip 139 (287)
+.+.++.+++... .+|.+-+ + ..+-+..+.++|+|+|-+..-+ +.++.. +..+++ ..++|
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv------~-tleea~eA~~~GaD~I~LDn~~---------~e~l~~av~~~~~~~~~i~ 245 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVET------E-TLEQVQEALEYGADIIMLDNMP---------VDLMQQAVQLIRQQNPRVK 245 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEEC------C-CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHHhcCCCeE
Confidence 3455555565543 3333332 1 2233445558999999886221 122222 222222 35789
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
+.++||| +.+.+.++.+ +|+|++.+|+....-|++
T Consensus 246 leAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 246 IEASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 9999999 5899998887 799999999877756653
No 311
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.81 E-value=0.051 Score=49.44 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=93.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHH-HcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARR-VEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~-~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++. ++. .+ -|-||+ .|.. . ..-+.||.|-+.+ +.+..++
T Consensus 41 ~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~V-PValHLDHg~~~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~e 119 (286)
T PRK12738 41 MRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNM-PLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKS 119 (286)
T ss_pred HCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHH
Confidence 357999998542 33445554442 332 33 244554 2322 1 2234556554432 3445555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++.... .+++|-.=+.- |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......|++.+++|+
T Consensus 120 vv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~ 198 (286)
T PRK12738 120 VVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIR 198 (286)
T ss_pred HHHHHHH-cCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHH
Confidence 5554432 24554433321 10 0 123444455556889999987544444333333357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVLHGgSG~~~e~~~kai~-~GI~KiNi~T~l~ 236 (286)
T PRK12738 199 EVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATELK 236 (286)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 999999998885433 466777777 6999898887653
No 312
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.78 E-value=0.0082 Score=56.05 Aligned_cols=72 Identities=24% Similarity=0.424 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++..+.++.|.++|+|.|+|..-.... ..-.+.++.+++..+ +|||+ |+|-|++-++.+++ .|||+|-+|-
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ik~~~~~~~via-GNV~T~e~a~~L~~-aGad~vkVGi 178 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKKIKKKFPDVPVIA-GNVVTYEGAKDLID-AGADAVKVGI 178 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHHHHHHSTTSEEEE-EEE-SHHHHHHHHH-TT-SEEEESS
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHHHHHhCCCceEEe-cccCCHHHHHHHHH-cCCCEEEEec
Confidence 345677888999999999996332111 233577889988864 88885 88999999999888 6999999985
Q ss_pred h
Q 023070 169 S 169 (287)
Q Consensus 169 ~ 169 (287)
|
T Consensus 179 G 179 (352)
T PF00478_consen 179 G 179 (352)
T ss_dssp S
T ss_pred c
Confidence 4
No 313
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.77 E-value=0.021 Score=48.56 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=67.6
Q ss_pred HHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC---ChhhHHHHHH
Q 023070 24 LNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQDTIKYAK 97 (287)
Q Consensus 24 ~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~---~~~~~~~~a~ 97 (287)
.+.|+.+ ..|+.+|-+|- .+-++++++.+++||. +|-.... ...-+++-++
T Consensus 2 ~~mA~Aa~~gGA~giR~~~-----------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~ 58 (192)
T PF04131_consen 2 ARMAKAAEEGGAVGIRANG-----------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVD 58 (192)
T ss_dssp HHHHHHHHHCT-SEEEEES-----------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHH
T ss_pred HHHHHHHHHCCceEEEcCC-----------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHH
Confidence 4455544 45789999981 2346778888999986 4532211 1123456677
Q ss_pred HHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 98 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 98 ~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++|++.|.+.+-.+.. + ..-.+.++++++.. +..-.||.|.+++..+.+ .|+|.|.-
T Consensus 59 ~l~~aGadIIAlDaT~R~R----p-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~-~G~D~I~T 118 (192)
T PF04131_consen 59 ALAEAGADIIALDATDRPR----P-ETLEELIREIKEKY---QLVMADISTLEEAINAAE-LGFDIIGT 118 (192)
T ss_dssp HHHHCT-SEEEEE-SSSS-----S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHH-TT-SEEE-
T ss_pred HHHHcCCCEEEEecCCCCC----C-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHH-cCCCEEEc
Confidence 8889999999887644431 1 23357788898876 455679999999999998 59998753
No 314
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.77 E-value=0.053 Score=49.30 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=93.5
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh-h---hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ-R---IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~-~---~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ .++. .+ -|-||+ .|+. . ..-+.||.|-+.+ +.+..++
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~V-PValHLDH~~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~ 119 (284)
T PRK12737 41 LRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNI-PLALHLDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEENIAIVKE 119 (284)
T ss_pred hCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEecCCCCCHHHHHHHHHH
Confidence 467999999753 3344545444 3332 33 255665 2432 2 2234556554432 3444555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++-.+. .++.|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......||+.+++++
T Consensus 120 vv~~Ah~-~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~ 198 (284)
T PRK12737 120 VVEFCHR-YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIR 198 (284)
T ss_pred HHHHHHH-cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 5554432 24554443321 10 0 123344444556799999977544433333222357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++++ .|+.-|=|++.+.
T Consensus 199 ~~~~iPLVlHGgSG~~~e~~~kai~-~Gi~KiNi~T~l~ 236 (284)
T PRK12737 199 EKVSIPLVLHGASGVPDEDVKKAIS-LGICKVNVATELK 236 (284)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeCcHHH
Confidence 999999998876443 356677776 6999999988753
No 315
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.77 E-value=0.041 Score=47.47 Aligned_cols=147 Identities=15% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh--hhh--cCccc-----ccccCChHHHHHHHHHHhh----
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR--IAR--RGNYG-----AFLMDNLPLVKSLVEKLAL---- 73 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~--~~~--~~~~G-----~~l~~~~~~~~~iv~~v~~---- 73 (287)
+.|++.=|.+.++++..+.++. ++.|+..|||.+-.|.. ..+ +..|+ +.-.-+++.+.+.+++=.+
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 5678888999999999999995 56689999999887762 111 11222 2112344444444332100
Q ss_pred ------------ccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcE
Q 023070 74 ------------NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPV 140 (287)
Q Consensus 74 ------------~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipV 140 (287)
..++|+.--. .+.. | +....++|++.|-+.+-..- + -..+++.++.-. ++|+
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~---~Tpt---E-i~~A~~~Ga~~vK~FPa~~~---G-----G~~yikal~~plp~~~l 147 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGA---ATPS---E-VMALREEGYTVLKFFPAEQA---G-----GAAFLKALSSPLAGTFF 147 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCC---CCHH---H-HHHHHHCCCCEEEECCchhh---C-----CHHHHHHHHhhCCCCcE
Confidence 1112221000 1111 2 22345688888877642111 0 136788887654 7999
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+..|||. ++++.+.++. |+..+..|..+.
T Consensus 148 ~ptGGV~-~~n~~~~l~a-g~~~~~ggs~l~ 176 (201)
T PRK06015 148 CPTGGIS-LKNARDYLSL-PNVVCVGGSWVA 176 (201)
T ss_pred EecCCCC-HHHHHHHHhC-CCeEEEEchhhC
Confidence 9999995 5899999995 555555565444
No 316
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=96.75 E-value=0.052 Score=50.49 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=77.7
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEE-eccCCCC-cCCCCccccHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDE-KDGKKFRADWNAI 129 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~v-h~rt~~~-~~~~~~~~~~~~i 129 (287)
.-||..+.+.+++.++- ..+.||.+|-....+.++....++.+...|-.-+++ |..++.- .+. ....|+..+
T Consensus 181 qIgAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~-~~~ldl~ai 254 (335)
T PRK08673 181 QIGARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETAT-RNTLDLSAV 254 (335)
T ss_pred EECcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC-hhhhhHHHH
Confidence 35788888888766654 358999999777767888888899999999876655 5222221 111 224788999
Q ss_pred HHHHhhCCCcEEEe----cCCCC--HHHHHHHHHhcCccEEEEehhh
Q 023070 130 KAVKNALRIPVLAN----GNVRH--MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 130 ~~i~~~~~ipVi~n----GgI~s--~~da~~~l~~~gad~VmiGR~~ 170 (287)
..+++..+.|||+. +|.++ +..+..++. .||||+||=.-.
T Consensus 255 ~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA-~GAdGliIE~H~ 300 (335)
T PRK08673 255 PVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVA-AGADGLIVEVHP 300 (335)
T ss_pred HHHHHhcCCCEEEeCCCCCccccchHHHHHHHHH-hCCCEEEEEecC
Confidence 99998889999774 33321 244455665 699999997543
No 317
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.74 E-value=0.051 Score=49.86 Aligned_cols=123 Identities=16% Similarity=0.071 Sum_probs=81.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ ++..|+++|=+|- ..|-...-..+.-.++++.+++.+ ++||.+-+. . +..+++++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~G----------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~ 93 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAG----------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEY 93 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHH
Confidence 6677777776 4467999999982 234444445555566666665544 589988874 3 77899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-cC-CCCHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-GN-VRHMEDVQKCL 156 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-Gg-I~s~~da~~~l 156 (287)
++.+++.|++++.+..-.... .+...-.++++.+.+.+++||+ +| .| --+++.+.++.
T Consensus 94 ~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 94 AQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999885432211 0001234667788888889965 33 23 33677777666
No 318
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.73 E-value=0.069 Score=48.58 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=96.4
Q ss_pred CCCCEEEEecCC------CHHHHHHHHHH-HcC-CC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAN------DPEILLNAARR-VEP-YC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~------~~~~~~~aA~~-~~~-g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-+ ..+.+...++. ++. .+ --|-||+ .|.. ...-+.||.|-+.+ +.+..
T Consensus 41 ~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T 120 (285)
T PRK07709 41 EKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHHPFEENVETT 120 (285)
T ss_pred HCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 367999999653 23444444442 332 22 1366775 3442 23334566554442 33445
Q ss_pred HHHHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++++... ..+++|-.-+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+......||+.+++++
T Consensus 121 revv~~Ah-~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~ 199 (285)
T PRK07709 121 KKVVEYAH-ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR 199 (285)
T ss_pred HHHHHHHH-HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHH
Confidence 55555443 235665544321 11 1 224444444556889999987544444333333357999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+.+++|++.-||=..+ +++.++++ .|+.-|=|++.+
T Consensus 200 ~~~~iPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 236 (285)
T PRK07709 200 DFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 236 (285)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 9999999988876555 66777777 689888888765
No 319
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.72 E-value=0.023 Score=53.47 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=37.2
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+.++.+++..++||++= ||.+++|+..+.+ .|+|+|.++
T Consensus 215 ~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~-~Gvd~I~VS 256 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALK-AGASGIWVT 256 (367)
T ss_pred CCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHH-cCcCEEEEC
Confidence 57999999999999999976 6999999999998 699998764
No 320
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.71 E-value=0.02 Score=51.60 Aligned_cols=89 Identities=18% Similarity=0.314 Sum_probs=57.5
Q ss_pred HHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 66 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 66 ~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.-++.+++..+ .++.+-++ + .+-++.+.+.|+|+|-+-.. ..+.++++.+.+ .+||+
T Consensus 166 ~av~~~r~~~~~~~~Igvev~---t----~eea~~A~~~gaDyI~ld~~------------~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVE---S----LEEAEEAAEAGADIIMLDNM------------KPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeC---C----HHHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhcCCCcEE
Confidence 34555555543 34444332 2 23355667899999988432 225566665544 38999
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.||| +++.+.++.+ +|+|++.+|.-...-|+
T Consensus 227 AsGGI-~~~ni~~~a~-~Gvd~Isvgait~sa~~ 258 (265)
T TIGR00078 227 ASGGI-TLDNLEEYAE-TGVDVISSGALTHSVPA 258 (265)
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEeCHHHcCCCc
Confidence 99999 5899999987 79999999643332343
No 321
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.70 E-value=0.058 Score=49.64 Aligned_cols=126 Identities=13% Similarity=0.018 Sum_probs=83.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ ++..|+++|=+|- ..|-+..-..+.-.++++.+.+.+ ++||.+-+.. .+..++++
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~G----------stGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~ 94 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMG----------TFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIA 94 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECc----------ccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHH
Confidence 36777777777 4577999999982 345555555666667777666555 4888887632 35689999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-.... .+...-.++.+.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 95 ~a~~A~~~Gad~vlv~~P~y~~---~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMWLP---LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHHhCCCEEEECCCcCCC---CCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHhc
Confidence 9999999999999886432111 11123356777888877 58876 2 232335666666653
No 322
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.69 E-value=0.021 Score=51.75 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+-++.+.+.|+|+|.+. ....+.++++++..+ +||.+.||| +++.+.++.+ +|+|+|.+|.-..
T Consensus 199 eea~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 199 EQVREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33555668999999772 123366777776554 788899999 6899999998 7999999997554
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 265 sa~~ 268 (277)
T PRK08072 265 SVKA 268 (277)
T ss_pred CCcc
Confidence 3444
No 323
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.68 E-value=0.073 Score=48.39 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-. ..+.+...++ +++. .+. |-||+ .|.. ...-+.||.|-+. .+.+..++
T Consensus 41 ~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP-V~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (284)
T PRK09195 41 LHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP-LALHLDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQNISLVKE 119 (284)
T ss_pred hCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHH
Confidence 468999999652 3355555555 3333 332 55664 2222 1223445544333 23445555
Q ss_pred HHHHHhhccCCcEEEEecC-C-C-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++-.+ ..+++|-.=+.. | . + ..++.+..+.+++.|+|.+.|.=.|.-+.+......||+.+++++
T Consensus 120 vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~ 198 (284)
T PRK09195 120 VVDFCH-RFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIR 198 (284)
T ss_pred HHHHHH-HcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 555443 235555443321 1 0 0 123334444455889999977444433333222357999999999
Q ss_pred hhCCCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 236 (284)
T PRK09195 199 QWVNIPLVLHGASGLPTKDIQQTIK-LGICKVNVATELK 236 (284)
T ss_pred HHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 999999998775333 466777877 6999999988765
No 324
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.68 E-value=0.02 Score=54.21 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCC-CCccccHHHH----HHH
Q 023070 62 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDG-KKFRADWNAI----KAV 132 (287)
Q Consensus 62 ~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~-~~~~~~~~~i----~~i 132 (287)
+...+.+..+++.. ++||.+-+--+.+.++..++++.++++|+|+|.+-=. +...+.. .....+.+.+ +.+
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~V 177 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWI 177 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHH
Confidence 33333455565555 6799988755567889999999999999999988211 1100000 0001234444 555
Q ss_pred HhhCCCcEE--EecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 133 KNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 133 ~~~~~ipVi--~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
++.+++||+ .+-++.+..++.+.+.+.|+|||.+---+.
T Consensus 178 k~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 178 NAKATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 777789987 567888888888877778999998755444
No 325
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.68 E-value=0.037 Score=51.71 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=65.7
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCC-------CCcC----------------------------CCC
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKD----------------------------GKK 121 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~-------~~~~----------------------------~~~ 121 (287)
.|..+-+....+...+.++.++++++|++.|.+|--+. +.+. ...
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 56666555555667778899999999999998872111 0000 001
Q ss_pred ccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 122 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 122 ~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+...|+.++.+++..++||++- ||.+++|+..+.+ .|+|+|.+.
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~-~G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAE-YGVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHH-cCCCEEEEE
Confidence 2357999999999999999987 6789999998887 699999875
No 326
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.65 E-value=0.11 Score=46.37 Aligned_cols=111 Identities=19% Similarity=0.241 Sum_probs=76.1
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++.+ ++.||.+|-..+.+.++....++.+...|-.-|.+.-|-..- ++. ...|+..+..+
T Consensus 107 gArn~rn~~LL----~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf--~y~r~~~D~~~vp~~ 179 (264)
T PRK05198 107 PAFLCRQTDLL----VAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSF--GYNNLVVDMRGLPIM 179 (264)
T ss_pred CchhcchHHHH----HHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCc--CCCCeeechhhhHHH
Confidence 67777777554 44443 489999997777888899999999999999999887665421 221 13577778777
Q ss_pred HhhCCCcEEEe---------------cCCCCHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN---------------GNVRHME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n---------------GgI~s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++ ..+|||+. ||-++.- -+...+. .|+||+|+= .--||.
T Consensus 180 k~-~~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA-~GadGl~iE--vHpdP~ 235 (264)
T PRK05198 180 RE-TGAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVA-VGVAGLFIE--THPDPD 235 (264)
T ss_pred hh-CCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHH-cCCCEEEEE--eCCCcc
Confidence 76 45999953 4444322 2334455 699999995 334554
No 327
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.65 E-value=0.067 Score=48.85 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=83.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ +++.|+|+|=++ |..|-...-..+.-.++++.+.+.+ .+||.+-+. .+..++++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~ 90 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIE 90 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHH
Confidence 36778888777 456799999988 2234444445555566666655544 488888874 35789999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee--cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n--GgI~s~~da~~~l~ 157 (287)
.++.+++.|+|++.+..-.... .+...-.++++.+.+++++||+ +| |---+++.+.++.+
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 9999999999999886432211 0012235677888888889965 44 32347777777765
No 328
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.65 E-value=0.05 Score=49.23 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-.+ +++.|+++|=+|- ..|-+..-..+.-.++++.+++.+ ++||.+-+.. .+..++++
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~G----------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~ 86 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCG----------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIE 86 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHH
Confidence 36677777776 4567999999982 233333444555566666665554 4777766533 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHHh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLEE 158 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~~ 158 (287)
+++.+++.|++++.+..-.... .+...-+++.+++.+.+++||+ . .|---|++.+.++.+.
T Consensus 87 ~a~~a~~~G~d~v~~~~P~~~~---~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~ 153 (284)
T cd00950 87 LTKRAEKAGADAALVVTPYYNK---PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEH 153 (284)
T ss_pred HHHHHHHcCCCEEEEcccccCC---CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcC
Confidence 9999999999999886432211 1112235677888888888987 2 4556678888777753
No 329
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.64 E-value=0.024 Score=51.41 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+-++.+.++|+|+|-+- ....+.++++.+.. ++||.++||| +++.+.++.+ +|+|++.+|.-..
T Consensus 200 eea~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt~ 265 (277)
T PRK05742 200 DELRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33556668999999663 12335566665544 7999999999 5899998887 7999999997554
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 266 s~~~ 269 (277)
T PRK05742 266 DVKA 269 (277)
T ss_pred CCcc
Confidence 4443
No 330
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.63 E-value=0.14 Score=44.81 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhh--hh------cCc-----ccccccCChHHHHHHHHHHhh
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRI--AR------RGN-----YGAFLMDNLPLVKSLVEKLAL 73 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~--~~------~~~-----~G~~l~~~~~~~~~iv~~v~~ 73 (287)
+.|++.=+.+.++++..+.++. ++.|+..|||-+-.|... .+ ... -|+.-.-+++.+...+++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a--- 90 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL--- 90 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc---
Confidence 4678877899999999999995 566899999998655421 00 011 111111223322222221
Q ss_pred ccCCcEEEEecCCCChhhHHHH-----------------HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC
Q 023070 74 NLNVPVSCKIRVFPNLQDTIKY-----------------AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 136 (287)
Q Consensus 74 ~~~~pv~vKiR~g~~~~~~~~~-----------------a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 136 (287)
..++-|+ .+++ .+..+. +....++|++.+-+.+-. .....+++.++.-.
T Consensus 91 GA~FiVs----P~~~-~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~---------~~G~~~ikal~~p~ 156 (222)
T PRK07114 91 GANFIVT----PLFN-PDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGS---------VYGPGFVKAIKGPM 156 (222)
T ss_pred CCCEEEC----CCCC-HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECccc---------ccCHHHHHHHhccC
Confidence 0011110 0100 001111 112334555555444211 11246788887643
Q ss_pred -CCcEEEecCCCC-HHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 137 -RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 137 -~ipVi~nGgI~s-~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++|++..|||.. .+++.+.++ .|+.+|.+|+.+..+.+
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl~-aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWFG-AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHHh-CCCEEEEEChhhcCccc
Confidence 699999999984 589999999 69999999988775444
No 331
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.63 E-value=0.0079 Score=61.96 Aligned_cols=73 Identities=11% Similarity=0.155 Sum_probs=57.2
Q ss_pred CCCEEEEeccCCCCcC-CCCccccHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccch
Q 023070 103 GCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 177 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~~---ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~lf 177 (287)
|+|++.+.+-...... ..+.+..|+.++++++.++ +||++-||| +++++.++++ .|++||.+.++++..++..
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~-~Ga~giAvisai~~a~d~~ 204 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA-TGIDGLCVVSAIMAAANPA 204 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhCCCCHH
Confidence 5999999765443322 1122357899999988887 999999999 7899999998 6999999999999766643
No 332
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.61 E-value=0.025 Score=51.07 Aligned_cols=66 Identities=20% Similarity=0.343 Sum_probs=46.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+....+.|+|+|-+-..+. +.++++.+. .++||.+.||| +++.+.++.+ +|+|++.+|....
T Consensus 194 a~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~~~i~i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~ 259 (269)
T cd01568 194 AEEALEAGADIIMLDNMSP------------EELKEAVKLLKGLPRVLLEASGGI-TLENIRAYAE-TGVDVISTGALTH 259 (269)
T ss_pred HHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccCCCeEEEEECCC-CHHHHHHHHH-cCCCEEEEcHHHc
Confidence 4445578999998853221 334443333 37899999999 5799998887 7999999986555
Q ss_pred hCcc
Q 023070 172 ENPA 175 (287)
Q Consensus 172 ~nP~ 175 (287)
.-|+
T Consensus 260 s~~~ 263 (269)
T cd01568 260 SAPA 263 (269)
T ss_pred CCCc
Confidence 5544
No 333
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.61 E-value=0.062 Score=49.94 Aligned_cols=156 Identities=10% Similarity=0.101 Sum_probs=85.6
Q ss_pred CCCCEEEEecCCCH----H----HHHH-HHHHHcCCCCEEEE--eccCChhhhhcCcccccccCChHHHHHHHHHHhhcc
Q 023070 7 EDRPLFVQFCANDP----E----ILLN-AARRVEPYCDYVDI--NLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL 75 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~----~----~~~~-aA~~~~~g~d~Idi--N~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~ 75 (287)
.+.|+++.+.++.. + .+.. .-..+..|+|+|-+ |+|++... ...+.+.+++++. ...
T Consensus 124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~-----------~ml~~l~~i~~ea-~~~ 191 (348)
T PRK09250 124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESR-----------RQIEEISEAFEEA-HEL 191 (348)
T ss_pred CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHH-HHh
Confidence 46899999988521 1 1111 12245668887655 45533210 1122333444433 245
Q ss_pred CCcEEEEec-CCC---C-------hhhHHHHHHHHHHcCCCEEEEeccCC-CC------------c-CCCCccccHHHHH
Q 023070 76 NVPVSCKIR-VFP---N-------LQDTIKYAKMLEDAGCSLLAVHGRTR-DE------------K-DGKKFRADWNAIK 130 (287)
Q Consensus 76 ~~pv~vKiR-~g~---~-------~~~~~~~a~~l~~~G~~~I~vh~rt~-~~------------~-~~~~~~~~~~~i~ 130 (287)
++|+.+=+- .|. + .+.....++...+.|+|.|-+---+. .. . ........-+.++
T Consensus 192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~ 271 (348)
T PRK09250 192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR 271 (348)
T ss_pred CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence 889876221 121 1 12233445667899999997742111 00 0 0111112335567
Q ss_pred HHHhhC---CCcEEEecCCC-CHHHHH----HH---HHhcCccEEEEehhhhhCcc
Q 023070 131 AVKNAL---RIPVLANGNVR-HMEDVQ----KC---LEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 131 ~i~~~~---~ipVi~nGgI~-s~~da~----~~---l~~~gad~VmiGR~~l~nP~ 175 (287)
.+.+.+ ++||+..||=. +.+++. .+ ++ .|+.|+.+||-....|.
T Consensus 272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKR-AGGMGLIIGRKAFQRPM 326 (348)
T ss_pred HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhh-cCCcchhhchhhhcCCc
Confidence 777776 79999999866 444443 44 44 59999999998877664
No 334
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=96.53 E-value=0.035 Score=49.40 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=69.7
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc---CCCCcCCCCccccHHHHHHHHhhCCCcEEEec----CCC
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVR 147 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG----gI~ 147 (287)
.++||-.|-.++.+.++++..|+-+...|-..+++.-| |.+.. .....|+..+..+|+.+++|||++= |=+
T Consensus 151 ~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~--TRntLDi~aV~~~kq~THLPVivDpSH~~Grr 228 (286)
T COG2876 151 QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKA--TRNTLDISAVPILKQETHLPVIVDPSHATGRR 228 (286)
T ss_pred cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccccccccc--ccceechHHHHHHHhhcCCCEEECCCCcccch
Confidence 47999999888889999999999999999999988643 33321 1225789999999999999999752 222
Q ss_pred CHH--HHHHHHHhcCccEEEEehhhhhCcc
Q 023070 148 HME--DVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 148 s~~--da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++- -+..++. .||||+|+= .-.||.
T Consensus 229 ~lv~pla~AA~A-aGAdglmiE--VHp~P~ 255 (286)
T COG2876 229 DLVEPLAKAAIA-AGADGLMIE--VHPDPE 255 (286)
T ss_pred hhHHHHHHHHHh-ccCCeeEEE--ecCCcc
Confidence 221 2233344 599999984 555665
No 335
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.53 E-value=0.037 Score=51.99 Aligned_cols=43 Identities=23% Similarity=0.632 Sum_probs=38.3
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
...|+.|+.+++..+.|||.-| |.+++|+..+.+ .|+|+|.++
T Consensus 222 ~~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~-~G~d~I~VS 264 (361)
T cd04736 222 SFNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIE-LGADGVILS 264 (361)
T ss_pred cCCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHH-CCcCEEEEC
Confidence 3579999999999999999875 999999999998 599999875
No 336
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.53 E-value=0.095 Score=47.68 Aligned_cols=162 Identities=19% Similarity=0.298 Sum_probs=92.7
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHH-HHcC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAAR-RVEP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~-~~~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-.. .+.+...++ .++. .+ -|-||+ .|.. ...-+.||.|-+. .+.+..++
T Consensus 41 ~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~V-PValHLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~ 119 (284)
T PRK12857 41 EKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASV-PVALHLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKK 119 (284)
T ss_pred hCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHH
Confidence 3689999997532 344544444 2332 33 255664 2432 2233455654333 24445555
Q ss_pred HHHHHhhccCCcEEEEecC--CC-------C----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-------N----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-------~----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
+++..+ ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+......|++.+++++
T Consensus 120 vv~~Ah-~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~ 198 (284)
T PRK12857 120 VVEIAH-AVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIK 198 (284)
T ss_pred HHHHHH-HcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHH
Confidence 555543 234444433321 10 0 123344444456889999977444433333222357999999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 199 ~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 236 (284)
T PRK12857 199 ELVNIPIVLHGSSGVPDEAIRKAIS-LGVRKVNIDTNIR 236 (284)
T ss_pred HHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 9999999988864433 56677776 6898888887653
No 337
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.53 E-value=0.02 Score=50.87 Aligned_cols=76 Identities=21% Similarity=0.301 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.+..++|+.+++.|+.+|.|..- +.+ + ..+++.++.+++.+++||+..+.|-++.++.+... .|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~~~-F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---QSY-F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---CCc-C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 37789999999999999977521 111 1 35789999999999999999999999999999998 79999976544
Q ss_pred hhh
Q 023070 170 LLE 172 (287)
Q Consensus 170 ~l~ 172 (287)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
No 338
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.52 E-value=0.1 Score=48.13 Aligned_cols=149 Identities=13% Similarity=0.238 Sum_probs=78.4
Q ss_pred CCCCEEEEecCC-------C-HHHHHHHHH-HHcC-CCC-EEEEec-cCCh----hhhhcCccccccc--------CChH
Q 023070 7 EDRPLFVQFCAN-------D-PEILLNAAR-RVEP-YCD-YVDINL-GCPQ----RIARRGNYGAFLM--------DNLP 62 (287)
Q Consensus 7 ~~~p~~~Qi~g~-------~-~~~~~~aA~-~~~~-g~d-~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~ 62 (287)
...|+|+|+.-+ + ...+..+++ .++. ++. -|-||+ .|.. ...-+.+|.|-+. .+.+
T Consensus 47 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S~lp~eeNI~ 126 (321)
T PRK07084 47 TKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGSHLPYEENVA 126 (321)
T ss_pred hCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCCCCCHHHHHH
Confidence 468999999531 1 233444444 2332 322 366664 2322 1223455554433 2344
Q ss_pred HHHHHHHHHhhccCCcEEEEecC-C-C-------C--hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-----CccccH
Q 023070 63 LVKSLVEKLALNLNVPVSCKIRV-F-P-------N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRADW 126 (287)
Q Consensus 63 ~~~~iv~~v~~~~~~pv~vKiR~-g-~-------~--~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-----~~~~~~ 126 (287)
..+++++..+ ..+++|-.-+.. | . . ..++.+..+.+++.|+|.+.+.=.|.-+.+.. ....||
T Consensus 127 ~T~evv~~Ah-~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~ 205 (321)
T PRK07084 127 LTKKVVEYAH-QFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRF 205 (321)
T ss_pred HHHHHHHHHH-HcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCH
Confidence 4555555443 335555433321 1 0 0 12344444445578999997743333332221 224799
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHH
Q 023070 127 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 156 (287)
Q Consensus 127 ~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l 156 (287)
+.+++|++.+ ++|++.-||=..+++..+.+
T Consensus 206 d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~ 236 (321)
T PRK07084 206 DILEEIEKRIPGFPIVLHGSSSVPQEYVKTI 236 (321)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCcHHHHHHH
Confidence 9999999999 79999888765554433333
No 339
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.51 E-value=0.1 Score=47.28 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=92.6
Q ss_pred CCCCEEEEecCCC-----HHHHHHHHHHH-cC-CCCEEEEec-cCCh----hhhhcCccccccc--------CChHHHHH
Q 023070 7 EDRPLFVQFCAND-----PEILLNAARRV-EP-YCDYVDINL-GCPQ----RIARRGNYGAFLM--------DNLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~-----~~~~~~aA~~~-~~-g~d~IdiN~-gcP~----~~~~~~~~G~~l~--------~~~~~~~~ 66 (287)
...|+|+|+.-.. .+.+...++.+ +. .+ -|-||+ .|.. ....+.||.|-+. .+.+..++
T Consensus 36 ~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~V-PV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~ 114 (276)
T cd00947 36 TRSPVILQISEGAIKYAGLELLVAMVKAAAERASV-PVALHLDHGSSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKE 114 (276)
T ss_pred hCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHH
Confidence 3579999996432 34555555533 22 22 255554 2321 1223445555443 23445555
Q ss_pred HHHHHhhccCCcEEEEecC--CCC---------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHh
Q 023070 67 LVEKLALNLNVPVSCKIRV--FPN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKN 134 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~~---------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~ 134 (287)
+++-.+. .+++|-.=+.- |.. ..++.+..+.+++.|+|.+.|.=.|.-+.+.. ....||+.++++.+
T Consensus 115 vv~~ah~-~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~ 193 (276)
T cd00947 115 VVELAHA-YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAE 193 (276)
T ss_pred HHHHHHH-cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHH
Confidence 5555443 25555443321 110 12333444445578999997643333332222 23579999999999
Q ss_pred hCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 135 ALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 135 ~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
.+++|++.-||=..+ +++.++.+ .|+.-|=+++.+
T Consensus 194 ~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 229 (276)
T cd00947 194 RVNVPLVLHGGSGIPDEQIRKAIK-LGVCKININTDL 229 (276)
T ss_pred HhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 999999988876555 55777777 699999888776
No 340
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.49 E-value=0.027 Score=52.01 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
++.-.+.++.+......-+.+ ..|.. ++..+.++.+.++| +|.|+|.--.. . ...-.+.++.+++..+-
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~AhG-----h-s~~~i~~ik~ir~~~p~ 150 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVANG-----Y-SEHFVEFVKLVREAFPE 150 (343)
T ss_pred HHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCCC-----c-HHHHHHHHHHHHhhCCC
Confidence 444444454433333223333 23333 33456677777774 99998842110 0 02345788999988766
Q ss_pred cEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 139 PVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 139 pVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+..|+|-|++++..+++ .|||+|-+|
T Consensus 151 ~~viaGNV~T~e~a~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 151 HTIMAGNVVTGEMVEELIL-SGADIVKVG 178 (343)
T ss_pred CeEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 6777799999999999998 699999877
No 341
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.49 E-value=0.039 Score=50.40 Aligned_cols=92 Identities=21% Similarity=0.382 Sum_probs=62.5
Q ss_pred ccCCcEEEEecCCCChhhHHHHHHHHHHcC-CCEEEEeccCCCCcC-----CCCccccHHHHHHHHhhCCCcEEE--ecC
Q 023070 74 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NGN 145 (287)
Q Consensus 74 ~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipVi~--nGg 145 (287)
..+.|+.+-+. |.+.++..+.++.++++| +|+|.+......... ......-++.++.+++.+++||++ +.+
T Consensus 89 ~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~ 167 (301)
T PRK07259 89 EFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN 167 (301)
T ss_pred ccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 34788888874 456788999999999999 999988432211111 000112356778888888899886 444
Q ss_pred CCCHHHHHHHHHhcCccEEEE
Q 023070 146 VRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~Vmi 166 (287)
+.+..++.+.+++.|+|++.+
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEE
Confidence 555556666777789999865
No 342
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=96.49 E-value=0.12 Score=47.13 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=80.4
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ +++.|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+. . +..+++++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~ 86 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAY 86 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHH
Confidence 6677777776 4567999999982 233333334444455566555544 589998874 3 67899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee--cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN--GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n--GgI~s~~da~~~l~ 157 (287)
++.++++|++++.+..-.... .+...-.++++.+.+.+++||+ +| |---+++.+.++.+
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999885332211 0011224667778888889975 32 32346777776665
No 343
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=96.49 E-value=0.035 Score=51.32 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=67.7
Q ss_pred cccC-ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 56 FLMD-NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 56 ~l~~-~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.+.+ +++...+.++.++.. .+ .+-+..|.+.++ .+.+..+.++| +|+|.+..-.. . ...-++.++.+
T Consensus 62 i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~ahg-----~-s~~~~~~i~~i 131 (321)
T TIGR01306 62 IMHRFDEESRIPFIKDMQER-GL--FASISVGVKACE-YEFVTQLAEEALTPEYITIDIAHG-----H-SNSVINMIKHI 131 (321)
T ss_pred EEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCccC-----c-hHHHHHHHHHH
Confidence 4445 666655555554322 23 344445555444 45566777778 69887742110 0 02346789999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++..+.|++..|+|.+++++..+++ .|||+|.+|
T Consensus 132 ~~~~p~~~vi~GnV~t~e~a~~l~~-aGad~I~V~ 165 (321)
T TIGR01306 132 KTHLPDSFVIAGNVGTPEAVRELEN-AGADATKVG 165 (321)
T ss_pred HHhCCCCEEEEecCCCHHHHHHHHH-cCcCEEEEC
Confidence 9988899999999999999999998 699999877
No 344
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.46 E-value=0.092 Score=47.77 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=80.1
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-.+ +++.|+++|=+|. ..|-...-..+.=.++++.+++.+ ++||.+-+.. .+..++++
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~ 87 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIE 87 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHH
Confidence 36777777777 4567999999972 233333334444455555555444 4788766533 35688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
.++.++++|++++.+..-.... .+...-+++++.+.+.+++||+ . +|---+++.+.++.+
T Consensus 88 ~a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~ 153 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAE 153 (292)
T ss_pred HHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHHc
Confidence 9999999999999886432211 0011234667778877888876 2 354556777776654
No 345
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.45 E-value=0.12 Score=47.44 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=80.9
Q ss_pred CCCCEEEEecCC-----CHHHHHHHHHHH-cCCC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCAN-----DPEILLNAARRV-EPYC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~-----~~~~~~~aA~~~-~~g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+ ..+.+...++.+ +..- --|-||+ .|.. ....+.||.|-+.+ +.+..++
T Consensus 40 ~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 119 (307)
T PRK05835 40 ENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSK 119 (307)
T ss_pred HCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH
Confidence 367999998653 234444455433 3221 2466664 2332 12334556554443 3344445
Q ss_pred HHHHHhhccCCcEEEEecC--CC-C----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC--CCccccHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV--FP-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKA 131 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~--g~-~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~--~~~~~~~~~i~~ 131 (287)
+++-.+ ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=.|.-+.+. .....||+.+++
T Consensus 120 vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~ 198 (307)
T PRK05835 120 VVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQE 198 (307)
T ss_pred HHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHH
Confidence 544433 234554443321 10 0 1233444445568899999775444333332 222579999999
Q ss_pred HHhhCCCcEEEecCCCCHHHHH
Q 023070 132 VKNALRIPVLANGNVRHMEDVQ 153 (287)
Q Consensus 132 i~~~~~ipVi~nGgI~s~~da~ 153 (287)
+++.+++|++.-||=..+++..
T Consensus 199 I~~~~~iPLVLHGgSGip~e~~ 220 (307)
T PRK05835 199 VKRLTNIPLVLHGASAIPDDVR 220 (307)
T ss_pred HHHHhCCCEEEeCCCCCchHHh
Confidence 9999999999999877777533
No 346
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.43 E-value=0.045 Score=50.80 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=69.4
Q ss_pred cccCChHHHHHHHHHHhhcc-CCcEEEEecCCCC-hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH----HHH
Q 023070 56 FLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAI 129 (287)
Q Consensus 56 ~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~-~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~----~~i 129 (287)
..+.+|+.. +-++.+++.. +.|+.+-+..... ..+..++.+.++..+++++.+|--.........+..++ +.+
T Consensus 92 ~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i 170 (326)
T cd02811 92 AALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERI 170 (326)
T ss_pred hhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHH
Confidence 345567765 5666676655 4888876554210 11334455566667899999984321111111123345 568
Q ss_pred HHHHhhCCCcEEE--ecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 130 KAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 130 ~~i~~~~~ipVi~--nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 171 ~~l~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~vs 209 (326)
T cd02811 171 EELVKALSVPVIVKEVGFGISRETAKRLAD-AGVKAIDVA 209 (326)
T ss_pred HHHHHhcCCCEEEEecCCCCCHHHHHHHHH-cCCCEEEEC
Confidence 8888888999997 455578888877666 799999875
No 347
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.42 E-value=0.13 Score=46.76 Aligned_cols=162 Identities=15% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCCEEEEecCCC------HHHHHHHHHH-HcC-CC-CEEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAND------PEILLNAARR-VEP-YC-DYVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~~------~~~~~~aA~~-~~~-g~-d~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-.. .+.+...++. ++. .+ --|-||+ .|+. ...-+.||.|-+.+ +.+..
T Consensus 41 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T 120 (286)
T PRK08610 41 ENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATT 120 (286)
T ss_pred HCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHH
Confidence 3689999995532 3334444442 222 22 1366775 2433 22334566554432 34445
Q ss_pred HHHHHHHhhccCCcEEEEecC--CC-C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--FP-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g~-~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
.++++... ..+++|-.=+.. |. + ..++.+..+.+++.|+|.+.|.=+|.-+.+......|++.+++++
T Consensus 121 ~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~ 199 (286)
T PRK08610 121 KKVVEYAH-EKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIG 199 (286)
T ss_pred HHHHHHHH-HcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHH
Confidence 55555443 335555444321 11 0 123444444456899999977544444333333357899999999
Q ss_pred hhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhh
Q 023070 134 NALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~ 170 (287)
+.+++|++.-||=..+ +++.++++ .|+.-|=|++.+
T Consensus 200 ~~~~vPLVLHGgSG~~~e~~~~ai~-~GI~KiNi~T~l 236 (286)
T PRK08610 200 LSTGLPLVLHGGTGIPTKDIQKAIP-FGTAKINVNTEN 236 (286)
T ss_pred HHHCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeccHH
Confidence 9999999988876555 66677777 689888887655
No 348
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.42 E-value=0.017 Score=49.63 Aligned_cols=149 Identities=17% Similarity=0.248 Sum_probs=84.1
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChh--hhh--cCcc-----cccccCChHHHHHHHHH-------
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQR--IAR--RGNY-----GAFLMDNLPLVKSLVEK------- 70 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~--~~~--~~~~-----G~~l~~~~~~~~~iv~~------- 70 (287)
+.+++.=|.+.++++..+.++. ++.|+..|||.+-.|.. ..+ +..| |+.-..+++.+.+.+++
T Consensus 7 ~~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS 86 (196)
T PF01081_consen 7 ENKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS 86 (196)
T ss_dssp HHSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC
Confidence 3467888899999999999994 56789999999877651 111 1111 11112234433333332
Q ss_pred ----------HhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCc
Q 023070 71 ----------LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIP 139 (287)
Q Consensus 71 ----------v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ip 139 (287)
.++ .++|+.=-+ .+. -| +..+.++|++.+-+.+-..- + -..+++.++.-. +++
T Consensus 87 P~~~~~v~~~~~~-~~i~~iPG~---~Tp---tE-i~~A~~~G~~~vK~FPA~~~---G-----G~~~ik~l~~p~p~~~ 150 (196)
T PF01081_consen 87 PGFDPEVIEYARE-YGIPYIPGV---MTP---TE-IMQALEAGADIVKLFPAGAL---G-----GPSYIKALRGPFPDLP 150 (196)
T ss_dssp SS--HHHHHHHHH-HTSEEEEEE---SSH---HH-HHHHHHTT-SEEEETTTTTT---T-----HHHHHHHHHTTTTT-E
T ss_pred CCCCHHHHHHHHH-cCCcccCCc---CCH---HH-HHHHHHCCCCEEEEecchhc---C-----cHHHHHHHhccCCCCe
Confidence 111 122222111 011 12 22244677777766533221 0 147788888754 699
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
++..|||. ++++.+.++ .|+.+|.+|+.+..+.
T Consensus 151 ~~ptGGV~-~~N~~~~l~-ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 151 FMPTGGVN-PDNLAEYLK-AGAVAVGGGSWLFPKD 183 (196)
T ss_dssp EEEBSS---TTTHHHHHT-STTBSEEEESGGGSHH
T ss_pred EEEcCCCC-HHHHHHHHh-CCCEEEEECchhcCHH
Confidence 99999996 489999998 5999999998665443
No 349
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=96.41 E-value=0.13 Score=49.15 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=93.6
Q ss_pred CCCCCEEEEecC---CCHHHHHHHHH-HHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcE
Q 023070 6 PEDRPLFVQFCA---NDPEILLNAAR-RVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPV 79 (287)
Q Consensus 6 ~~~~p~~~Qi~g---~~~~~~~~aA~-~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv 79 (287)
.+..|+..|++- .+++.+..-++ .+..| +..+.. +|-.. ..+....+.+.+-++++++ ..+..+
T Consensus 162 ~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~~---------~k~~~~~~~~~~ri~~lr~~g~~~~l 231 (408)
T TIGR01502 162 TNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLDG---------EKLLEYVKWLRDRIIKLGREGYAPIF 231 (408)
T ss_pred CCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCCH---------HHhhhhHHHHHHHHHHhhccCCCCeE
Confidence 456788888752 45777766554 66666 776664 54211 0111223344455555662 224567
Q ss_pred EEEecC------CCChhhHHHHHHHHHHcCCCE-EEEeccCCCCcCC-CCccccHHHHHHHHhh-----CCCcEEEecCC
Q 023070 80 SCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDG-KKFRADWNAIKAVKNA-----LRIPVLANGNV 146 (287)
Q Consensus 80 ~vKiR~------g~~~~~~~~~a~~l~~~G~~~-I~vh~rt~~~~~~-~~~~~~~~~i~~i~~~-----~~ipVi~nGgI 146 (287)
.+...- +|+..++.++.+.+++....+ +.+ ++.-. .....+++.++++++. +++||++.=.+
T Consensus 232 ~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~i-----EqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~ 306 (408)
T TIGR01502 232 HIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWC 306 (408)
T ss_pred EEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEE-----ecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCC
Confidence 777764 788899999999998742211 222 11110 0001348888999877 58999999999
Q ss_pred CCHHHHHHHHHhcCccEEEE
Q 023070 147 RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 147 ~s~~da~~~l~~~gad~Vmi 166 (287)
.|++|+.++++...||.|.+
T Consensus 307 ~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 307 NTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCHHHHHHHHHhCCCCEEEe
Confidence 99999999999888999987
No 350
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.40 E-value=0.091 Score=47.68 Aligned_cols=126 Identities=19% Similarity=0.177 Sum_probs=80.2
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-.+ +++.|+++|=++- ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~G----------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~ 85 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVG----------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAISL 85 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHH
Confidence 6677777776 4577999998872 223333333444455555554433 4788877532 356789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE------EecCCCCHHHHHHHHHh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi------~nGgI~s~~da~~~l~~ 158 (287)
++.+++.|+|++.+..-.... .+...-+++++.+.+.+++||+ ..|---+++.+.++.+.
T Consensus 86 a~~a~~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcC
Confidence 999999999999886432211 1111234667788888888876 23545577777777653
No 351
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.40 E-value=0.016 Score=52.37 Aligned_cols=65 Identities=18% Similarity=0.310 Sum_probs=48.5
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
++.+.+.|+|+|-+-.. ..+.++++.+.. ++|+.+.||| +++.+.++.+ +|+|++.+|.....-
T Consensus 195 a~~A~~~gaDyI~ld~~------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~~a 260 (268)
T cd01572 195 LKEALEAGADIIMLDNM------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTHSA 260 (268)
T ss_pred HHHHHHcCCCEEEECCc------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeecCC
Confidence 44556788998877422 246677776655 5999999999 5899998887 799999999755433
Q ss_pred c
Q 023070 174 P 174 (287)
Q Consensus 174 P 174 (287)
|
T Consensus 261 ~ 261 (268)
T cd01572 261 P 261 (268)
T ss_pred C
Confidence 3
No 352
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.34 E-value=0.11 Score=47.16 Aligned_cols=105 Identities=22% Similarity=0.334 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhhc-cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc----HHHHHHHHhhC
Q 023070 62 PLVKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNAL 136 (287)
Q Consensus 62 ~~~~~iv~~v~~~-~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~ 136 (287)
+...+-+...++. .+.|+.+-++. .+.++..+.++.++++|+++|.++..............+ .+.++.+++.+
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc
Confidence 4444444444443 47888887754 456788899999999999999997554332111110112 35677788878
Q ss_pred CCcEEE--ecCCC--CHHHHHHHHHhcCccEEEEe
Q 023070 137 RIPVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 137 ~ipVi~--nGgI~--s~~da~~~l~~~gad~VmiG 167 (287)
++||++ ++++. +..++.+.+.+.|+|++.+.
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 889874 34443 23344445566799999875
No 353
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=96.33 E-value=0.028 Score=47.99 Aligned_cols=83 Identities=30% Similarity=0.322 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
...++..+..+.+...--..+++-.....+.+. ..|++.+..+......||+..|||.-.+|.+.+.. .|++||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~---G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAVGTKS---GPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccccccc---CCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeee
Confidence 346677777776654433333333322322222 37889999999888899999999999999998887 79999999
Q ss_pred ehhhhhC
Q 023070 167 AESLLEN 173 (287)
Q Consensus 167 GR~~l~n 173 (287)
|+++...
T Consensus 210 aTalh~G 216 (229)
T COG1411 210 ATALHEG 216 (229)
T ss_pred hhhhhcC
Confidence 9998653
No 354
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.27 E-value=0.067 Score=50.96 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.++.+.++.+.++|+|.|++..-... +..-++.++++++.. +++|+ .|+|.|++++..+++ .|+|+|.+|=
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~------~~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~-aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH------STRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLIS-VGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC------ChhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHH-cCCCEEEECC
Confidence 34678899999999999998432211 123457888998875 56654 589999999999998 6999998873
No 355
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.25 E-value=0.16 Score=46.27 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=95.5
Q ss_pred CCCCEEEEecCC------CHHHHHHHHHH-Hc-CCCC-EEEEec-cCCh----hhhhcCcccccccC--------ChHHH
Q 023070 7 EDRPLFVQFCAN------DPEILLNAARR-VE-PYCD-YVDINL-GCPQ----RIARRGNYGAFLMD--------NLPLV 64 (287)
Q Consensus 7 ~~~p~~~Qi~g~------~~~~~~~aA~~-~~-~g~d-~IdiN~-gcP~----~~~~~~~~G~~l~~--------~~~~~ 64 (287)
...|+|+|+.-. .++.+..+.+. ++ .++. -|-||+ .|.. ....+.+|.|-+.+ +.+..
T Consensus 41 ~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS~lp~eeNi~~T 120 (288)
T TIGR00167 41 EKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGSHEPFEENIELT 120 (288)
T ss_pred HCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCCHHHHHHHH
Confidence 367999999653 34556665553 22 2222 266775 3433 22334556654443 34445
Q ss_pred HHHHHHHhhccCCcEEEEecC--C-CC----------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcc-ccHHHHH
Q 023070 65 KSLVEKLALNLNVPVSCKIRV--F-PN----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIK 130 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv~vKiR~--g-~~----------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~-~~~~~i~ 130 (287)
+++++... ..+++|-.=+.. | .+ ..++.+..+-+++.|+|.+.|.=+|.-+.+..... .|++.++
T Consensus 121 ~~vv~~Ah-~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~ 199 (288)
T TIGR00167 121 KKVVERAH-KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLE 199 (288)
T ss_pred HHHHHHHH-HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHH
Confidence 55555433 235555443321 1 00 11333434444578999997754444333322223 7999999
Q ss_pred HHHhhCCCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 131 AVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 131 ~i~~~~~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
++++.+++|++.-||=..+ +++.++.+ .|+.-|=|++.+.
T Consensus 200 ~I~~~v~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 240 (288)
T TIGR00167 200 EIQKYVNLPLVLHGGSGIPDEEIKKAIS-LGVVKVNIDTELQ 240 (288)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEcChHHH
Confidence 9999999999988876655 57777887 6898888887653
No 356
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.22 E-value=0.026 Score=52.96 Aligned_cols=42 Identities=24% Similarity=0.642 Sum_probs=35.3
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+.|+.+++..++|||.=| |.+++|+..+.+ .|+|+|.++
T Consensus 212 ~~w~~i~~~~~~~~~pvivKg-v~~~~da~~~~~-~G~~~i~vs 253 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIVKG-VLSPEDAKRAVD-AGVDGIDVS 253 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEEEE-E-SHHHHHHHHH-TT-SEEEEE
T ss_pred CCHHHHHHHhcccCCceEEEe-cccHHHHHHHHh-cCCCEEEec
Confidence 479999999999999999866 689999999998 599999886
No 357
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.22 E-value=0.16 Score=47.41 Aligned_cols=77 Identities=16% Similarity=0.110 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCCEEEEeccCCCCcCCC---C--ccccHHHHHHHHhhC-CCcEEEecCCCCH-----------------
Q 023070 93 IKYAKMLEDAGCSLLAVHGRTRDEKDGK---K--FRADWNAIKAVKNAL-RIPVLANGNVRHM----------------- 149 (287)
Q Consensus 93 ~~~a~~l~~~G~~~I~vh~rt~~~~~~~---~--~~~~~~~i~~i~~~~-~ipVi~nGgI~s~----------------- 149 (287)
.+..+.+++.|+|.+.|.=.|.-+.+.. + ...||+.+++|++.+ ++|++.-||=..+
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~ 253 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKET 253 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccccc
Confidence 4444455688999996633333222211 1 127899999999999 7999988876555
Q ss_pred -----HHHHHHHHhcCccEEEEehhh
Q 023070 150 -----EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 150 -----~da~~~l~~~gad~VmiGR~~ 170 (287)
+++.++++ .|+.-|=|++.+
T Consensus 254 ~g~p~e~i~~ai~-~GI~KVNi~Tdl 278 (347)
T TIGR01521 254 YGVPVEEIVEGIK-YGVRKVNIDTDL 278 (347)
T ss_pred CCCCHHHHHHHHH-CCCeeEEeChHH
Confidence 66677776 477777777655
No 358
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.15 E-value=0.037 Score=54.25 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+.++.+.++|++.|.|..-.. . ....|+.++++++.. ++||++ |+|.|++++..+.+ .|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G-----~-s~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~-aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQG-----N-SIYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLID-AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCC-----C-chHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHH-cCCCEEEEC
Confidence 447889999999999999864211 0 023478899999885 688777 99999999999998 599999865
No 359
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=96.14 E-value=0.18 Score=45.80 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=80.5
Q ss_pred CCHHHHHHHHH-HHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-++ +++. |+++|=++- ..|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~G----------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai 86 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNG----------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQ 86 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHH
Confidence 36777777777 5677 999998872 223333333444455555555443 4788876533 3567899
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
++++.+++.|++++.+..-.... .+...-+++++.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhc
Confidence 99999999999999876432211 00012356778888888 88987 2 344457777776664
No 360
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.14 E-value=0.21 Score=43.40 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-----hhh
Q 023070 18 NDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-----LQD 91 (287)
Q Consensus 18 ~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-----~~~ 91 (287)
.++....++++. .+.|+..+++| .+ +.++.+++..++|+..-.+.+.+ ...
T Consensus 24 ~~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~ 80 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITP 80 (219)
T ss_pred CcHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCC
Confidence 466778888885 45688887742 22 34455555568898643332221 011
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
..+.++.+.++|++.|.+....... .. +....+.++.+++..++|++. ++.|++++..+.+ .|+|.+.+.
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~-p~--~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~~-~G~d~i~~~ 150 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPR-PD--GETLAELIKRIHEEYNCLLMA--DISTLEEALNAAK-LGFDIIGTT 150 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCC-CC--CcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHHH-cCCCEEEcc
Confidence 2456788899999988775432210 00 013346677777665577776 6889999988877 599998653
No 361
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=96.11 E-value=0.19 Score=45.84 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=79.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .+..|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+.. .+..+++++
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~ 87 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLEL 87 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHH
Confidence 6677777776 4567999998872 234333334444455555554433 4788876532 456789999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-..... +...-.++++.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~---~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKP---NQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCC---CHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 9999999999998875322110 0112346677888888 78876 3 244456777776664
No 362
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=96.06 E-value=0.17 Score=44.21 Aligned_cols=143 Identities=16% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP 87 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~ 87 (287)
+.|+.+-+--.|+..+..-+ ..+.|+|.+.+|.. ...+.+.+.++++++ .+.-+.|-+-...
T Consensus 56 ~~~v~~DLK~~Di~~~v~~~-~~~~Gad~vTvH~~----------------a~~~~i~~~~~~~~~-~g~~~~V~llts~ 117 (216)
T PRK13306 56 DKIIVADTKIADAGKILAKM-AFEAGADWVTVICA----------------AHIPTIKAALKVAKE-FNGEIQIELYGNW 117 (216)
T ss_pred CCEEEEEEeecCCcHHHHHH-HHHCCCCEEEEeCC----------------CCHHHHHHHHHHHHH-cCCEEEEEECCCC
Confidence 46788888888988777744 56779999999942 134456666666553 2334555544444
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC-CccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
+.++ ++.+.+.|++.+.+|--...+..+. ..+...+.++++++ .+..+.+.|||+ ++.+.... ..|+|.+++
T Consensus 118 ~~~~----l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~-~~~~i~V~gGI~-~~~~~~~~-~~~ad~~Vv 190 (216)
T PRK13306 118 TWEQ----AQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD-MGFKVSVTGGLV-VEDLKLFK-GIPVKTFIA 190 (216)
T ss_pred CHHH----HHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc-CCCeEEEcCCCC-HhhHHHHh-cCCCCEEEE
Confidence 3332 2345566776666663222221111 01233455555554 244488999997 45555543 459999999
Q ss_pred ehhhhhCcc
Q 023070 167 AESLLENPA 175 (287)
Q Consensus 167 GR~~l~nP~ 175 (287)
||++...++
T Consensus 191 Gr~I~~a~d 199 (216)
T PRK13306 191 GRAIRGAAD 199 (216)
T ss_pred CCcccCCCC
Confidence 999887666
No 363
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=96.06 E-value=0.26 Score=44.95 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=78.9
Q ss_pred CCHHHHHHHHH-HHcCC-CCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAAR-RVEPY-CDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g-~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~ 93 (287)
=|.+.+.+-.+ .+..| +++|=+| |..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..+++
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i 86 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAV 86 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHH
Confidence 36677777777 45678 9999888 2234333345555566666665544 4788877532 3568899
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+.++.+++.|+|++.+..-.... .+...-+++.+.+.+++ ++||+ + .|---+++.+.++.+
T Consensus 87 ~la~~a~~~Gad~v~v~~P~y~~---~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHHHhCCCEEEEeCCcCCC---CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 99999999999999885422111 00012245666676655 67765 3 244456666666654
No 364
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=96.06 E-value=0.089 Score=46.02 Aligned_cols=92 Identities=16% Similarity=0.218 Sum_probs=73.5
Q ss_pred HHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEE
Q 023070 65 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 142 (287)
Q Consensus 65 ~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~ 142 (287)
.+.++++++.+ ++.+.+..+-+|+.+++.++++.+++.++.+| ++.-. +.|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~i-------EeP~~---~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWI-------EEPCA---PDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeE-------ECCCC---ccCHHHHHHHHhhCCCCEEe
Confidence 66777887776 47788888878999999999999999887777 22111 34688889999999999999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.=.+.++++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 777999999998888777888866
No 365
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.05 E-value=0.14 Score=46.75 Aligned_cols=162 Identities=19% Similarity=0.312 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCHHH-----HHHHHHHH-cC-CCCEEEEec--cCCh---hhhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCANDPEI-----LLNAARRV-EP-YCDYVDINL--GCPQ---RIARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~-----~~~aA~~~-~~-g~d~IdiN~--gcP~---~~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-+.... +...++.+ +. .. -|-||+ |... ....+.+|.|-+.+ +.+..++
T Consensus 40 ~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~v-PValHLDH~~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~ 118 (287)
T PF01116_consen 40 LNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASV-PVALHLDHGKDFEDIKRAIDAGFTSVMIDGSALPFEENIAITRE 118 (287)
T ss_dssp TTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTS-EEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHH
T ss_pred hCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCC-CEEeecccCCCHHHHHHHHHhCcccccccCCcCCHHHHHHHHHH
Confidence 4679999997644433 33333322 22 32 244443 2222 22334556554432 3334444
Q ss_pred HHHHHhhccCCcEEEEecC-C-C----C--------hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCC--CccccHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P----N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIK 130 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~----~--------~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~--~~~~~~~~i~ 130 (287)
+++-.+ ..+++|-.=+.. + . . ..++.+..+.+++.|+|.+.|.=+|.-+.+.. ....|++.++
T Consensus 119 vv~~ah-~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~ 197 (287)
T PF01116_consen 119 VVEYAH-AYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLK 197 (287)
T ss_dssp HHHHHH-HTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHH
T ss_pred HHHhhh-hhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHH
Confidence 544433 235666555432 1 0 0 12445555556799999998854444333333 3357899999
Q ss_pred HHHhhC-CCcEEEecCCCCHH-HHHHHHHhcCccEEEEehhhh
Q 023070 131 AVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 131 ~i~~~~-~ipVi~nGgI~s~~-da~~~l~~~gad~VmiGR~~l 171 (287)
++++.+ ++|++.-||=..++ ++.++++ .|+.-|=+++.+.
T Consensus 198 ~I~~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 198 EIREAVPDIPLVLHGGSGLPDEQIRKAIK-NGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHTSEEEESSCTTS-HHHHHHHHH-TTEEEEEESHHHH
T ss_pred HHHHhcCCCCEEEECCCCCCHHHHHHHHH-cCceEEEEehHHH
Confidence 999999 99999988765555 7777887 6999998887664
No 366
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=96.04 E-value=0.32 Score=41.97 Aligned_cols=131 Identities=17% Similarity=0.251 Sum_probs=74.4
Q ss_pred EEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~ 89 (287)
+.+.|...|+..+.+.++.+ +.|+|.|.+-.. + |. +..+..+..+.++.+++.+..++.+-+-.
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~--------d--~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v---- 70 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM--------D--GH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMV---- 70 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc--------c--CC-cCCCcCcCHHHHHHHHhcCCCcEEEEeee----
Confidence 67889999999999998855 568999999421 1 11 11121233556666665444443333222
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-Vi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..++++.+.++|++.++||+...+ .....++.+++. ++. .+..+.-.+.+.+++ +. .++|.+.++
T Consensus 71 ~d~~~~i~~~~~~g~d~v~vh~~~~~--------~~~~~~~~~~~~-~~~~g~~~~~~t~~e~~~~-~~-~~~d~i~~~ 138 (220)
T PRK05581 71 ENPDRYVPDFAKAGADIITFHVEASE--------HIHRLLQLIKSA-GIKAGLVLNPATPLEPLED-VL-DLLDLVLLM 138 (220)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeccch--------hHHHHHHHHHHc-CCEEEEEECCCCCHHHHHH-HH-hhCCEEEEE
Confidence 13444556667999999999986321 122445555543 433 333322233444444 43 258988775
No 367
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=96.04 E-value=0.3 Score=45.19 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=82.6
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChhhHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~ 93 (287)
|...+++.+.+-++.. .||..+.+..|- .+++.-.+.++++++.+ ++.+.+...-+|+.+++.
T Consensus 111 l~~~~~~~~~~~a~~~-~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~ 174 (322)
T PRK05105 111 LCYGDPDELILKLADM-PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQ 174 (322)
T ss_pred eecCCHHHHHHHHHHc-CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHH
Confidence 4445788777666544 788888887641 23444556666776654 455666666679999999
Q ss_pred HHHHHHHH---cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 94 KYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 94 ~~a~~l~~---~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++++.+++ .++.+| +|. . .+++..+++++.+++||.+.=.+.++++. ..+. .++|.|.+
T Consensus 175 ~~~~~l~~~~~~~i~~i-------EqP--~---~~~~~~~~l~~~~~~PIa~DEs~~~~~~~-~~~~-~~~d~i~i 236 (322)
T PRK05105 175 QFAKYVPPDYRHRIAFL-------EEP--C---KTPDDSRAFARATGIAIAWDESLREPDFQ-FEAE-PGVRAIVI 236 (322)
T ss_pred HHHHHhhhhcCCCccEE-------ECC--C---CCHHHHHHHHHhCCCCEEECCCCCchhhh-hhhc-CCCCEEEE
Confidence 99999998 777766 221 1 12445678888899999998889988643 3333 47887644
No 368
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.03 E-value=0.053 Score=46.90 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=65.4
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|++.+-|+-++. ..++.|+++++..+--+++.|.|.|+++++.+++ .|++.++.
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~---------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~-aGA~Fivs 86 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTP---------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD-AGAQFIVS 86 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-cCCCEEEC
Confidence 4678899999999999999999986653 3357788888766545789999999999999998 59999954
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
=+ .||.+.+..+
T Consensus 87 -P~--~~~~v~~~~~ 98 (204)
T TIGR01182 87 -PG--LTPELAKHAQ 98 (204)
T ss_pred -CC--CCHHHHHHHH
Confidence 22 3888776554
No 369
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=96.02 E-value=0.23 Score=45.20 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=80.5
Q ss_pred CHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
|.+.+.+-.+ ++. .|+++|=++- ..|-...-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~ 90 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQE 90 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHH
Confidence 6777777777 557 7999999872 233333334454555666555544 4788876532 35688999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-.... .+...-+++++.+.+++++||+ .| |---+++.+.++.+
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 9999999999999887432211 1111235677788888888876 32 43446777766654
No 370
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.00 E-value=0.49 Score=41.45 Aligned_cols=142 Identities=20% Similarity=0.305 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 4 LPPEDRPLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 4 ~~~~~~p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
++.....+..++...++..+.+-++.+ +.|++.|.+.. ..+.| ..+..+-.++++++++.++.++.+-
T Consensus 3 ~~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f----~~~~~~g~~~~~~l~~~~~~~~~vh 71 (229)
T PLN02334 3 FSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHF----VPNLTIGPPVVKALRKHTDAPLDCH 71 (229)
T ss_pred cccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCc----CCccccCHHHHHHHHhcCCCcEEEE
Confidence 344455678888888888888877755 45899988853 11111 1111111256666666666665555
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccC-CCCcCCCCccccHHHHHHHHhhCCCcEEEecCC-CCHHHHHHHHHhcC
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-RDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETG 160 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt-~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI-~s~~da~~~l~~~g 160 (287)
+-. .++.++.+.+.++|++++++|... .. ......++.+++. ++-+-.+-.- +..+.+.+.+..+|
T Consensus 72 lmv----~~p~d~~~~~~~~gad~v~vH~~q~~~-------d~~~~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~ 139 (229)
T PLN02334 72 LMV----TNPEDYVPDFAKAGASIFTFHIEQAST-------IHLHRLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGL 139 (229)
T ss_pred ecc----CCHHHHHHHHHHcCCCEEEEeeccccc-------hhHHHHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccC
Confidence 422 233445666678999999999772 11 1113455666553 3222222222 23445555555323
Q ss_pred ccEEEEeh
Q 023070 161 CEGVLSAE 168 (287)
Q Consensus 161 ad~VmiGR 168 (287)
+|.|++|.
T Consensus 140 ~Dyi~~~~ 147 (229)
T PLN02334 140 VDMVLVMS 147 (229)
T ss_pred CCEEEEEE
Confidence 99999863
No 371
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.98 E-value=0.042 Score=49.69 Aligned_cols=63 Identities=13% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+..+.+.|+|+|-+-.... .++ +.++.+++. .++|+++.||| +++.+.++.+ +|+|+|++|.-
T Consensus 196 a~~A~~~gaD~I~ld~~~p---------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 196 ALAAAEAGADILQLDKFSP---------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred HHHHHHcCCCEEEECCCCH---------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChh
Confidence 3445589999998863322 122 233334433 36999999999 7899999988 79999977654
No 372
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.93 E-value=0.46 Score=43.04 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=89.9
Q ss_pred CCCCEEEEe---cCCCHHHHHHHHHHH-cCCCCEEEEec-cCChhhhhcCc-ccccccCChHHHHHHHHHHhhcc-CCcE
Q 023070 7 EDRPLFVQF---CANDPEILLNAARRV-EPYCDYVDINL-GCPQRIARRGN-YGAFLMDNLPLVKSLVEKLALNL-NVPV 79 (287)
Q Consensus 7 ~~~p~~~Qi---~g~~~~~~~~aA~~~-~~g~d~IdiN~-gcP~~~~~~~~-~G~~l~~~~~~~~~iv~~v~~~~-~~pv 79 (287)
.+.||+|-+ +|+ |...++.++.+ +.|+.+|.|-- --|.+ .++ -|..+. +++...+-|++++++. +.++
T Consensus 77 ~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~pk~---cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~f 151 (289)
T COG2513 77 VDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVGPKR---CGHLPGKELV-SIDEMVDRIKAAVEARRDPDF 151 (289)
T ss_pred cCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecccchh---cCCCCCCCcC-CHHHHHHHHHHHHHhccCCCe
Confidence 467888877 445 77888877744 56998888851 11111 111 123333 3444444444444443 5566
Q ss_pred EEEecCC----CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe---cCCCCHHHH
Q 023070 80 SCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDV 152 (287)
Q Consensus 80 ~vKiR~g----~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n---GgI~s~~da 152 (287)
.+--|.. ...+++++=++...++|+|.|-.++. .+.+.++++.+.+++|+.+| .|-+-.-++
T Consensus 152 vi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al-----------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~ 220 (289)
T COG2513 152 VIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEAL-----------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTV 220 (289)
T ss_pred EEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccC-----------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCH
Confidence 6655651 23678889999999999999977755 34578899999988776555 232211222
Q ss_pred HHHHHhcCccEEEEehhh
Q 023070 153 QKCLEETGCEGVLSAESL 170 (287)
Q Consensus 153 ~~~l~~~gad~VmiGR~~ 170 (287)
. -|+..|++.|..|-..
T Consensus 221 ~-~L~~~Gv~~V~~~~~~ 237 (289)
T COG2513 221 A-ELAELGVKRVSYGLTA 237 (289)
T ss_pred H-HHHhcCceEEEECcHH
Confidence 3 3335799999987443
No 373
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.90 E-value=0.066 Score=49.64 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccC-ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC--CEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 56 FLMD-NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 56 ~l~~-~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~--~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
.+.+ +++.....++.+. ...+.+-+..+.+.+ ..+-+..+.++|+ |.|.|..-.. ....-.+.++++
T Consensus 65 ~~~k~~~e~~~~~~r~~~---~~~l~v~~~vg~~~~-~~~~~~~Lv~ag~~~d~i~iD~a~g------h~~~~~e~I~~i 134 (326)
T PRK05458 65 IMHRFDPEARIPFIKDMH---EQGLIASISVGVKDD-EYDFVDQLAAEGLTPEYITIDIAHG------HSDSVINMIQHI 134 (326)
T ss_pred EEecCCHHHHHHHHHhcc---ccccEEEEEecCCHH-HHHHHHHHHhcCCCCCEEEEECCCC------chHHHHHHHHHH
Confidence 3445 6666555554432 222344444444433 4466777888855 9999842211 012335779999
Q ss_pred HhhCC-CcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~-ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
++..+ +||++ |+|.|++++..+.+ .|||++.+|
T Consensus 135 r~~~p~~~vi~-g~V~t~e~a~~l~~-aGad~i~vg 168 (326)
T PRK05458 135 KKHLPETFVIA-GNVGTPEAVRELEN-AGADATKVG 168 (326)
T ss_pred HhhCCCCeEEE-EecCCHHHHHHHHH-cCcCEEEEC
Confidence 98875 55554 88999999998888 699999877
No 374
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.90 E-value=0.064 Score=46.29 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=68.7
Q ss_pred EEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh
Q 023070 79 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE 158 (287)
Q Consensus 79 v~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~ 158 (287)
+..=+| +.+.+++.++++.+.+.|+..|-|+-++. ...+.|+++++..+--+++.|-|.|.++++++++
T Consensus 6 vv~Vir-~~~~~~a~~ia~al~~gGi~~iEit~~tp---------~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~- 74 (201)
T PRK06015 6 VIPVLL-IDDVEHAVPLARALAAGGLPAIEITLRTP---------AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK- 74 (201)
T ss_pred EEEEEE-cCCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH-
Confidence 333344 35678999999999999999999986643 3357788888766556899999999999999998
Q ss_pred cCccEEEEehhhhhCccchhchh
Q 023070 159 TGCEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 159 ~gad~VmiGR~~l~nP~lf~~~~ 181 (287)
.|++.++.= -.||.+.+..+
T Consensus 75 aGA~FivSP---~~~~~vi~~a~ 94 (201)
T PRK06015 75 AGSRFIVSP---GTTQELLAAAN 94 (201)
T ss_pred cCCCEEECC---CCCHHHHHHHH
Confidence 599998752 35777776544
No 375
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=95.90 E-value=0.05 Score=46.75 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=60.5
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|+..+-|+-|+. .-++.|+.+++..+--+++.|.|.|.++++++++ .||+.++.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~---------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~-aGA~FivS 86 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTP---------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA-AGAQFIVS 86 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTST---------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH-HT-SEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCc---------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH-cCCCEEEC
Confidence 4568999999999999999999997753 2357888888765546899999999999999999 59999875
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
= -.||.+.+..+.
T Consensus 87 P---~~~~~v~~~~~~ 99 (196)
T PF01081_consen 87 P---GFDPEVIEYARE 99 (196)
T ss_dssp S---S--HHHHHHHHH
T ss_pred C---CCCHHHHHHHHH
Confidence 2 357877765543
No 376
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.88 E-value=0.2 Score=46.76 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCC----------------
Q 023070 91 DTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRH---------------- 148 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s---------------- 148 (287)
++.+..+.+++.|+|.+.| ||.........+...||+.+++|++.+ ++|++.-||=..
T Consensus 174 ~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 174 DPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred CHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 3445555566899999965 655443100000127899999999999 799998886544
Q ss_pred ------HHHHHHHHHhcCccEEEEehhh
Q 023070 149 ------MEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 149 ------~~da~~~l~~~gad~VmiGR~~ 170 (287)
.++++++++ .|+.-|=|++.+
T Consensus 254 ~~~G~~~e~i~~ai~-~GI~KINi~Tdl 280 (347)
T PRK09196 254 ETYGVPVEEIQEGIK-HGVRKVNIDTDL 280 (347)
T ss_pred ccCCCCHHHHHHHHH-CCCceEEeChHH
Confidence 366677776 477777777655
No 377
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.88 E-value=0.11 Score=50.87 Aligned_cols=48 Identities=25% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEe
Q 023070 23 LLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKI 83 (287)
Q Consensus 23 ~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKi 83 (287)
..+|.+.+++|+|.||||+++..+ .++.+..+|+++++.+++||++..
T Consensus 168 ~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT 215 (499)
T TIGR00284 168 EGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT 215 (499)
T ss_pred HHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence 334445678899999999775432 345688999999887789999984
No 378
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=95.88 E-value=0.28 Score=44.24 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=74.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCC-ccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~-~~~~~~~i~~i 132 (287)
|+.++++.+++ +++. .++.||-+|-..+.+.++....++.+...|-.-|.+.-|-... ++. ...|+..+..+
T Consensus 113 gAr~~rqtdLL----~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tF--gy~~lv~D~r~ip~m 185 (290)
T PLN03033 113 PAFLCRQTDLL----VAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMF--GYNDLIVDPRNLEWM 185 (290)
T ss_pred CcHHHHHHHHH----HHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCc--CCCCcccchhhhHHH
Confidence 56666665554 4433 3589999998778888999999999999999999887665422 221 23577777777
Q ss_pred HhhCCCcEEEe--------------------cCCCCH--HHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 133 KNALRIPVLAN--------------------GNVRHM--EDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 133 ~~~~~ipVi~n--------------------GgI~s~--~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++ +++|||.- ||-+.. .-+..++. .|+||+|+= .--||+
T Consensus 186 k~-~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA-~GaDGlfiE--vHpdP~ 246 (290)
T PLN03033 186 RE-ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVA-VGVDGIFME--VHDDPL 246 (290)
T ss_pred Hh-cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE--ecCCcc
Confidence 74 78999852 333322 12334444 699999995 334555
No 379
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.86 E-value=0.26 Score=44.34 Aligned_cols=102 Identities=26% Similarity=0.344 Sum_probs=66.8
Q ss_pred CEEEEec-C---CCHHH-HHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE---
Q 023070 10 PLFVQFC-A---NDPEI-LLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--- 80 (287)
Q Consensus 10 p~~~Qi~-g---~~~~~-~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--- 80 (287)
|+++-+. | .++++ +..+.+.++ .|+++|.|=-| ....+.|+++++. ++||.
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHi 137 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHL 137 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeee
Confidence 3665552 3 35555 455566666 68888888521 2455666666543 78885
Q ss_pred ------------EEecCCCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 81 ------------CKIRVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 81 ------------vKiR~g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
.|+ .|-+ .+++++-++.++++|++.|.+-+- +. +.++++.+.+++|+|+-|
T Consensus 138 GL~pq~~~~~gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v----------~~--~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 138 GLTPQSVNVLGGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV----------PA--ELAKEITEALSIPTIGIG 203 (264)
T ss_pred cccceeecccCCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------CH--HHHHHHHHhCCCCEEEec
Confidence 222 2323 236678888999999999988533 12 678899999999999866
No 380
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.86 E-value=0.5 Score=45.34 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCEEEEec--CCCHHHHHHHHHHHcCCCCEEEEe-ccCCh-hhhh-----c--Ccccccc-cCCh--------HHHHHHH
Q 023070 9 RPLFVQFC--ANDPEILLNAARRVEPYCDYVDIN-LGCPQ-RIAR-----R--GNYGAFL-MDNL--------PLVKSLV 68 (287)
Q Consensus 9 ~p~~~Qi~--g~~~~~~~~aA~~~~~g~d~IdiN-~gcP~-~~~~-----~--~~~G~~l-~~~~--------~~~~~iv 68 (287)
.|+++-=+ +.+.+.+.++. +.|+.+|.+- .. |+ .|.. + .+....+ +.++ +...+.+
T Consensus 15 nPv~~aag~~~~~~~~~~~~~---~~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~~~~~~~~~~ 90 (420)
T PRK08318 15 NPFWLASAPPTNKYYNVARAF---EAGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDRPLEVNLREI 90 (420)
T ss_pred CCcEeCCcCCCCCHHHHHHHH---HhCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCcccccccCHHHHHHHH
Confidence 46665543 34555555554 3488888776 22 44 2322 1 1111111 2223 2222333
Q ss_pred HHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCC---CcCC-CCccccH----HHHHHHHhhCCCc
Q 023070 69 EKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---EKDG-KKFRADW----NAIKAVKNALRIP 139 (287)
Q Consensus 69 ~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~---~~~~-~~~~~~~----~~i~~i~~~~~ip 139 (287)
..+.+.. +.|+.+-+.-..+.++..++++.+++.|+|+|.+--.-.. .+.. .....+. +.++.+++.+++|
T Consensus 91 ~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~P 170 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLP 170 (420)
T ss_pred HHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCc
Confidence 4444433 5777776643326778899999999999999988311111 1100 0001233 4566666667889
Q ss_pred EE--EecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VL--ANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi--~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+ ..-++.+..++.+.+++.|+|+|.+
T Consensus 171 v~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 171 VIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred EEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 87 4566777778888787789999984
No 381
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=95.84 E-value=0.09 Score=50.10 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC
Q 023070 61 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 138 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 138 (287)
++.-.+.++++|+++ ++.+.+....+|+..+++++++.+++.|+.++ ++.- .+.|++..+++++.+++
T Consensus 191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wi-------EEPl---~~~d~~~~~~L~~~~~~ 260 (394)
T PRK15440 191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWI-------EECL---PPDDYWGYRELKRNAPA 260 (394)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcce-------eCCC---CcccHHHHHHHHHhCCC
Confidence 455677888888877 57888888888999999999999999998877 2211 13578889999998775
Q ss_pred cEEE--ecCCCCHHHHHHHHHhcCccEEEE
Q 023070 139 PVLA--NGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 139 pVi~--nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
||.. .=.+.+..++..+++...+|.+++
T Consensus 261 ~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 261 GMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred CCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 5443 335779999999999777888865
No 382
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=95.83 E-value=0.26 Score=45.97 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCCEEEE-----eccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCH----------------
Q 023070 92 TIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHM---------------- 149 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~---------------- 149 (287)
+.+..+.+++.|+|.+.| ||.........+...+|+.+++|++.+ ++|++.-||=..+
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~ 254 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE 254 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence 344444556789999965 555432100001127899999999999 7999988876555
Q ss_pred ------HHHHHHHHhcCccEEEEehhh
Q 023070 150 ------EDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 150 ------~da~~~l~~~gad~VmiGR~~ 170 (287)
++++++++ .|+.-|=|++.+
T Consensus 255 ~~g~~~e~~~kai~-~GI~KINi~Tdl 280 (347)
T PRK13399 255 TYGVPVEEIQRGIK-HGVRKVNIDTDI 280 (347)
T ss_pred cCCCCHHHHHHHHH-CCCeEEEeChHH
Confidence 56666666 466666666544
No 383
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=95.81 E-value=0.55 Score=43.37 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=84.7
Q ss_pred CCEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCC
Q 023070 9 RPLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVF 86 (287)
Q Consensus 9 ~p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g 86 (287)
.|+..-+...+|+++.+.++ .++.||..+.|..+ | + .-.+.++++++.+ ++.+.+.-+-+
T Consensus 119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~---------------~--~d~~~v~avr~~~~~~~l~vDaN~~ 180 (321)
T PRK15129 119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N---------------H--LISERMVAIRSAVPDATLIVDANES 180 (321)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C---------------c--hHHHHHHHHHHhCCCCeEEEECCCC
Confidence 45544554567787766555 56779999998752 1 1 1135567777665 34566666668
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|+..++..+++.+.+.++.+| +|.-. +.+++.++... .++||.+.=.+.++.|+..+. ..+|.|.+
T Consensus 181 w~~~~A~~~~~~l~~~~i~~i-------EqP~~---~~~~~~l~~~~--~~~pia~dEs~~~~~d~~~~~--~~~d~v~~ 246 (321)
T PRK15129 181 WRAEGLAARCQLLADLGVAML-------EQPLP---AQDDAALENFI--HPLPICADESCHTRSSLKALK--GRYEMVNI 246 (321)
T ss_pred CCHHHHHHHHHHHHhcCceEE-------ECCCC---CCcHHHHHHhc--cCCCEecCCCCCCHHHHHHHH--hhCCEEEe
Confidence 999999999999999888777 22111 23455454433 479999988999999998874 35777665
No 384
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.80 E-value=0.041 Score=53.36 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+-++.+.++|++.|.|...... ...-++.++++++. .++||++ |+|.|++++..+++ .|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~------~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~-aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGH------SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALID-AGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCc------HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 4567788899999999988532211 12346789999987 5899998 99999999999998 599999765
No 385
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.77 E-value=0.33 Score=42.09 Aligned_cols=61 Identities=21% Similarity=0.361 Sum_probs=39.4
Q ss_pred CCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHH-hcCccEEEEehhh
Q 023070 104 CSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-ETGCEGVLSAESL 170 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~-~~gad~VmiGR~~ 170 (287)
++++.+.... .. .+++| ..||+.++.+ ...|++..||| +++.+.+++. ..+..||=+.+|.
T Consensus 123 ~d~~LlDs~~-~~-~GGtG~~~dw~~~~~~---~~~p~iLAGGL-~peNV~~a~~~~~~p~gVDvsSGV 185 (207)
T PRK13958 123 VDLFIIDTPS-VS-YGGTGQTYDWTILKHI---KDIPYLIAGGI-NSENIQTVEQLKLSHQGYDIASGI 185 (207)
T ss_pred CCEEEEcCCC-CC-CCcCCcEeChHHhhhc---cCCCEEEECCC-CHHHHHHHHhcCCCCCEEEccccc
Confidence 5666665422 11 12222 4689988765 34699999999 5788888765 3466777776665
No 386
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.76 E-value=0.28 Score=42.50 Aligned_cols=133 Identities=20% Similarity=0.259 Sum_probs=84.1
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+...+++++.+.+..+ +.|.|.||- . .+++.+.+ ++...++||+--++.....+ .
T Consensus 59 f~n~~~~~i~~i~~~~--~ld~VQlHG-------------~---e~~~~~~~----l~~~~~~~v~kai~v~~~~~---~ 113 (208)
T COG0135 59 FVNESIEEILEIAEEL--GLDAVQLHG-------------D---EDPEYIDQ----LKEELGVPVIKAISVSEEGD---L 113 (208)
T ss_pred ECCCCHHHHHHHHHhc--CCCEEEECC-------------C---CCHHHHHH----HHhhcCCceEEEEEeCCccc---h
Confidence 3445666666555432 579999992 1 45555444 44444677775555533212 1
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
........-++.+.+-.....+..+.....||+.+... ....|++..||+ +++.+.++++.....+|=+.+|.=.+|
T Consensus 114 ~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 114 ELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred hhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccccccCC
Confidence 12223345588888866544322222225799987776 457889999999 689999999964349999999988777
Q ss_pred c
Q 023070 175 A 175 (287)
Q Consensus 175 ~ 175 (287)
.
T Consensus 191 G 191 (208)
T COG0135 191 G 191 (208)
T ss_pred C
Confidence 3
No 387
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.73 E-value=0.4 Score=43.48 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=90.7
Q ss_pred CCCCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEec
Q 023070 6 PEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIR 84 (287)
Q Consensus 6 ~~~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR 84 (287)
+...|+++++.+++.++..+.++.++ .|+|+|-+-. |.. . ..+.+-+.+-.+.|.+.+++|+.+--.
T Consensus 68 ~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~-------~---~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 68 AGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYY-------F---KPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp TTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STS-------S---SCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred cCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--ccc-------c---cchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 34579999999999999999998765 5999998853 431 1 124566778888888888999998754
Q ss_pred C---CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEecCCCCHHHHHHHHHhcC
Q 023070 85 V---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 85 ~---g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. |.+ -..+...++.+.+ ..+-+..- ..|+..+.++..... --.+.+| +-..+...+. .|
T Consensus 136 P~~tg~~--ls~~~l~~L~~~~-nv~giK~s----------~~~~~~~~~~~~~~~~~~~v~~G---~d~~~~~~l~-~G 198 (289)
T PF00701_consen 136 PARTGND--LSPETLARLAKIP-NVVGIKDS----------SGDLERLIQLLRAVGPDFSVFCG---DDELLLPALA-AG 198 (289)
T ss_dssp HHHHSST--SHHHHHHHHHTST-TEEEEEES----------SSBHHHHHHHHHHSSTTSEEEES---SGGGHHHHHH-TT
T ss_pred CCccccC--CCHHHHHHHhcCC-cEEEEEcC----------chhHHHHHHHhhhcccCeeeecc---cccccccccc-cc
Confidence 3 322 2334455555532 22222210 234555555555532 2235555 2234556666 59
Q ss_pred ccEEEEehhhhhCccchhchh
Q 023070 161 CEGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 161 ad~VmiGR~~l~nP~lf~~~~ 181 (287)
++|++.|-+.+ -|.++.++-
T Consensus 199 ~~G~is~~~n~-~P~~~~~i~ 218 (289)
T PF00701_consen 199 ADGFISGLANV-FPELIVEIY 218 (289)
T ss_dssp SSEEEESGGGT-HHHHHHHHH
T ss_pred CCEEEEccccc-ChHHHHHHH
Confidence 99999997765 567666654
No 388
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.72 E-value=0.14 Score=46.67 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCc---CCCC----c-cc--cHHHH
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DGKK----F-RA--DWNAI 129 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---~~~~----~-~~--~~~~i 129 (287)
..+...+.++.|...+++||++.+-.|-+..+....++.++++|+.+|.+-..+...+ .... . +. ..+.|
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 3445556678888888999999998886666778889999999999999943321110 0000 0 11 12334
Q ss_pred HHHHhh---CCCcEEEecCC----CCHHHHHHHH---HhcCccEEEEe
Q 023070 130 KAVKNA---LRIPVLANGNV----RHMEDVQKCL---EETGCEGVLSA 167 (287)
Q Consensus 130 ~~i~~~---~~ipVi~nGgI----~s~~da~~~l---~~~gad~VmiG 167 (287)
+.++++ .+++|++--+. ...+++.+.. .+.|||+|++=
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 444443 24677766332 2355554322 33699999984
No 389
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=95.71 E-value=0.2 Score=45.44 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=76.7
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~~ 95 (287)
|.+.+.+-++ .++.|+++|=++- ..|-...-..+.-.++++.+.+.+ ++||.+-+.. .+..+++++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~ 88 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIEL 88 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHH
Confidence 6677777777 4567999999872 223333333444455566555433 5788887533 356899999
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-Ee-----cCCCCHHHHHHHHH
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-AN-----GNVRHMEDVQKCLE 157 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~n-----GgI~s~~da~~~l~ 157 (287)
++.+++.|+|++.+..-.... .+...-.++++.+.+.+++||+ .| |---|++.+.++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~---~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFK---PSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSS---CCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHhhcCceEEEEecccccc---chhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 999999999999876432211 1111224667777777888875 33 44445666666554
No 390
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=95.71 E-value=0.17 Score=43.02 Aligned_cols=149 Identities=13% Similarity=0.247 Sum_probs=81.9
Q ss_pred CEEEEecCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc--EEEEecCC
Q 023070 10 PLFVQFCANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP--VSCKIRVF 86 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p--v~vKiR~g 86 (287)
.+..+|..+|-..+++-.+ ++..|+|.+-+..- -+-+..+.-+---+++++|+..+.+ +.+-+-
T Consensus 6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVM-----------Dg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmM-- 72 (224)
T KOG3111|consen 6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVM-----------DGHFVPNITFGPPVVESLRKHTGADPFFDVHMM-- 72 (224)
T ss_pred eechhhhccchHHHHHHHHHHHHcCCCeEEEeee-----------cccccCCcccchHHHHHHHhccCCCcceeEEEe--
Confidence 3567888888777776555 55679998766510 0111112222233455566555444 222221
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEecc--------------------------CCCC-----------------cCCCCcc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGR--------------------------TRDE-----------------KDGKKFR 123 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~r--------------------------t~~~-----------------~~~~~~~ 123 (287)
..+..+++..+.++|++.+++|-- |..+ ..++.|.
T Consensus 73 --V~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ 150 (224)
T KOG3111|consen 73 --VENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ 150 (224)
T ss_pred --ecCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh
Confidence 134445555555666666666521 1100 0011111
Q ss_pred ----ccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 124 ----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 124 ----~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.-++-++.+++.. +.-+-+.||+. ++.+.++.+ .||+.+..|++.+.-++
T Consensus 151 kFme~mm~KV~~lR~kyp~l~ievDGGv~-~~ti~~~a~-AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 151 KFMEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAE-AGANMIVAGSAVFGAAD 205 (224)
T ss_pred hhHHHHHHHHHHHHHhCCCceEEecCCcC-cchHHHHHH-cCCCEEEecceeecCCC
Confidence 1134466677554 44455999994 688888887 59999999998865433
No 391
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.68 E-value=0.31 Score=43.60 Aligned_cols=105 Identities=25% Similarity=0.300 Sum_probs=68.8
Q ss_pred CCC-EEEEec-C---CCHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE
Q 023070 8 DRP-LFVQFC-A---NDPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS 80 (287)
Q Consensus 8 ~~p-~~~Qi~-g---~~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~ 80 (287)
+.| +++-+. | +++++..+.+ +.++ .|+++|.|=-| ....+.|++++++ ++||.
T Consensus 72 ~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~ 131 (254)
T cd06557 72 PRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVM 131 (254)
T ss_pred CCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCee
Confidence 457 566552 3 4577766654 5666 79999988521 2455556665533 67776
Q ss_pred EEecC--------------CCC---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe
Q 023070 81 CKIRV--------------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 143 (287)
Q Consensus 81 vKiR~--------------g~~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n 143 (287)
--+.+ +-+ .+++++-++.++++|++.|.+-+- + -+.++++.+.+++|+|+-
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v----------~--~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV----------P--AELAKEITEALSIPTIGI 199 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC----------C--HHHHHHHHHhCCCCEEEe
Confidence 32221 112 245677888899999999988543 1 157889999999999987
Q ss_pred c
Q 023070 144 G 144 (287)
Q Consensus 144 G 144 (287)
|
T Consensus 200 G 200 (254)
T cd06557 200 G 200 (254)
T ss_pred c
Confidence 6
No 392
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=95.66 E-value=0.64 Score=43.82 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=89.4
Q ss_pred CCCCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--C
Q 023070 6 PEDRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN--V 77 (287)
Q Consensus 6 ~~~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~--~ 77 (287)
-.++|++.-+ .|-+|+.+++.+. .+..|+|.|-.+ ++.+.. +.+.++.+.+.+.+++..+.++ +
T Consensus 123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~--------~p~~eRv~~v~~av~~a~~eTG~~~ 194 (364)
T cd08210 123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPF--------APFEERVKACQEAVAEANAETGGRT 194 (364)
T ss_pred CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccC--------CCHHHHHHHHHHHHHHHHhhcCCcc
Confidence 3578877544 2789999999988 456689998443 332221 1122455566666666665554 4
Q ss_pred cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC-CcEEEe----cC-------
Q 023070 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN----GN------- 145 (287)
Q Consensus 78 pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipVi~n----Gg------- 145 (287)
++.+-+. -+.++..+-++.++++|++++-|..-+ .-|..+..+++... +||.+- |-
T Consensus 195 ~y~~Nit--a~~~em~~ra~~a~~~Ga~~vMv~~~~----------~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~ 262 (364)
T cd08210 195 LYAPNVT--GPPTQLLERARFAKEAGAGGVLIAPGL----------TGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDG 262 (364)
T ss_pred eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeeccc----------chHHHHHHHHhcCCCcEEEEccccccccccCCCc
Confidence 5555543 345688888999999999999775332 23456667777666 887754 22
Q ss_pred CCCHHHHHHHHHhcCccEEEEe
Q 023070 146 VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiG 167 (287)
|...--..++.+..|+|.++++
T Consensus 263 is~~~~~~kl~RlaGad~~~~~ 284 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFP 284 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeC
Confidence 2211235555666799988654
No 393
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=95.65 E-value=0.76 Score=40.04 Aligned_cols=134 Identities=16% Similarity=0.176 Sum_probs=83.6
Q ss_pred EEecCCCHHHHHHHHHHHcC-CCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC----C-
Q 023070 13 VQFCANDPEILLNAARRVEP-YCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----F- 86 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~-g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----g- 86 (287)
|.|.+.+.+++.+.++.+.. ++|.|||-+-+ +.. ...+.+.+.+..+++.+++|+.+=+|. |
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~---------l~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~ 69 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDY---------LEN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR 69 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGG---------STT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEecc---------ccc---cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence 67889999999888876655 99999998531 111 467788888999988889999998886 2
Q ss_pred C--ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHHHHHHH---
Q 023070 87 P--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKCLE--- 157 (287)
Q Consensus 87 ~--~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da~~~l~--- 157 (287)
+ +.++-.++.+.+.+.|+++|.|--.... ..... .......+..||++=- -.+.+++.+.++
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~--------~~~~~-~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~ 140 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFP--------DDLKS-RLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQ 140 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCH--------HHHHH-HHHHHHTTSEEEEEEEESS---THHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccch--------hHHHH-HHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHH
Confidence 1 3356678899999999999999533111 11111 2333345677776643 445544544443
Q ss_pred hcCccEEEEe
Q 023070 158 ETGCEGVLSA 167 (287)
Q Consensus 158 ~~gad~VmiG 167 (287)
..|||.|=+.
T Consensus 141 ~~gadivKia 150 (224)
T PF01487_consen 141 ELGADIVKIA 150 (224)
T ss_dssp HTT-SEEEEE
T ss_pred hcCCCeEEEE
Confidence 3577765443
No 394
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.63 E-value=0.54 Score=43.71 Aligned_cols=108 Identities=22% Similarity=0.294 Sum_probs=72.8
Q ss_pred ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCC---EEEEeccCCCCc
Q 023070 41 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEK 117 (287)
Q Consensus 41 ~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~---~I~vh~rt~~~~ 117 (287)
+|+|.-+ -||.=+.+.+++..+-+ .+.||.++... .+.++....++.+.+.|.. .+.+|..+..+.
T Consensus 108 ~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~ 176 (329)
T TIGR03569 108 LGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPA 176 (329)
T ss_pred cCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCC
Confidence 5566632 35555777777666543 48999999665 4677888888888899985 667786543221
Q ss_pred CCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 118 ~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
.....|+..|..+++..++||..++--....-...+.. .||+
T Consensus 177 --~~~~~nL~~I~~Lk~~f~~pVG~SdHt~G~~~~~aAva-lGA~ 218 (329)
T TIGR03569 177 --PFEDVNLNAMDTLKEAFDLPVGYSDHTLGIEAPIAAVA-LGAT 218 (329)
T ss_pred --CcccCCHHHHHHHHHHhCCCEEECCCCccHHHHHHHHH-cCCC
Confidence 11247899999999988999998865444444444444 4777
No 395
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.61 E-value=0.87 Score=39.53 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=78.1
Q ss_pred ecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 15 FCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 15 i~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+...+++.+.+.++ +.+.|.|.||-. .+++. ++.+++..++++.-.++.... .+...
T Consensus 61 f~~~~~~~i~~~~~--~~~~d~vQLHg~----------------e~~~~----~~~l~~~~~~~iik~i~v~~~-~~l~~ 117 (210)
T PRK01222 61 FVNASDEEIDEIVE--TVPLDLLQLHGD----------------ETPEF----CRQLKRRYGLPVIKALRVRSA-GDLEA 117 (210)
T ss_pred EeCCCHHHHHHHHH--hcCCCEEEECCC----------------CCHHH----HHHHHhhcCCcEEEEEecCCH-HHHHH
Confidence 33567777766654 346799999832 12333 345554456677655555322 12111
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
+... ...+|++.+...+. . .+++| ..||+.+. +..+.|++..||| +++.+.++++..+..||=+.+|.=..
T Consensus 118 -~~~~-~~~~d~~L~Ds~~~-~-~GGtG~~~dw~~l~---~~~~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~ 189 (210)
T PRK01222 118 -AAAY-YGDADGLLLDAYVG-L-PGGTGKTFDWSLLP---AGLAKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESA 189 (210)
T ss_pred -HHhh-hccCCEEEEcCCCC-C-CCCCCCccchHHhh---hccCCCEEEECCC-CHHHHHHHHHhcCCCEEEecCceECC
Confidence 1111 23578888875543 1 12222 46898772 1236799999999 68999999986688888887776544
Q ss_pred cc
Q 023070 174 PA 175 (287)
Q Consensus 174 P~ 175 (287)
|.
T Consensus 190 ~G 191 (210)
T PRK01222 190 PG 191 (210)
T ss_pred CC
Confidence 43
No 396
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.56 E-value=0.37 Score=43.11 Aligned_cols=126 Identities=18% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEecCC---CChhhHHHHHHHH-H
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYAKML-E 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKiR~g---~~~~~~~~~a~~l-~ 100 (287)
|++++ .|+|.|= .|.......- ++-....-..+.+...+++|++.++.| |++.+-.| .+.+++++.+.++ +
T Consensus 25 A~l~e~aG~d~i~--vGds~~~~~l-G~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 25 AKLADEAGVDVIL--VGDSLGMVVL-GYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHc-CCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 45544 5999994 4555443332 244444556777888888888888889 78777533 2355666655554 4
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
++|+++|.+-+.. ...+.|+.+++ .++||+ ..||. ++.+.+.+++ ++.
T Consensus 102 ~aGa~aVkiEd~~----------~~~~~I~al~~-agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~A 170 (254)
T cd06557 102 EAGADAVKLEGGA----------EVAETIRALVD-AGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEA 170 (254)
T ss_pred HhCCeEEEEcCcH----------HHHHHHHHHHH-cCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHC
Confidence 5999999996531 12244555553 378888 55654 2443333333 346
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
|||++.+
T Consensus 171 GA~~i~l 177 (254)
T cd06557 171 GAFALVL 177 (254)
T ss_pred CCCEEEE
Confidence 9999877
No 397
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=95.56 E-value=0.19 Score=43.77 Aligned_cols=128 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHcCCCC--EEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 8 DRPLFVQFCANDPEILLNAARRVEPYCD--YVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~~g~d--~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+.|+.+|+.|.+.+.+.+.|+.+..++. .|.| |.+. .-.+.++.+++. ++++.+-.
T Consensus 51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~-- 108 (211)
T cd00956 51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTA-- 108 (211)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEE--
Confidence 4689999999999999999986654332 2333 3321 123344444433 44444331
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEe-ccCCCCcCCCCccccHHHHHHHHh---hCCCc-EEEecCCCCHHHHHHHHHhcC
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKN---ALRIP-VLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh-~rt~~~~~~~~~~~~~~~i~~i~~---~~~ip-Vi~nGgI~s~~da~~~l~~~g 160 (287)
-.+.. -+..+.++|+++|... ||-.+. +. .-++.++++.+ ..+++ =+...+++++.++.+++. .|
T Consensus 109 V~s~~----Qa~~Aa~AGA~yvsP~vgR~~~~--g~---dg~~~i~~i~~~~~~~~~~tkil~As~r~~~ei~~a~~-~G 178 (211)
T cd00956 109 IFSAA----QALLAAKAGATYVSPFVGRIDDL--GG---DGMELIREIRTIFDNYGFDTKILAASIRNPQHVIEAAL-AG 178 (211)
T ss_pred ecCHH----HHHHHHHcCCCEEEEecChHhhc--CC---CHHHHHHHHHHHHHHcCCCceEEecccCCHHHHHHHHH-cC
Confidence 11222 3445667899998664 554432 11 22344444443 33433 355678999999999888 59
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
||.|-+.
T Consensus 179 ad~vTv~ 185 (211)
T cd00956 179 ADAITLP 185 (211)
T ss_pred CCEEEeC
Confidence 9999985
No 398
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.54 E-value=0.49 Score=41.11 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=78.5
Q ss_pred EEEEecC----CCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC
Q 023070 11 LFVQFCA----NDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV 85 (287)
Q Consensus 11 ~~~Qi~g----~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~ 85 (287)
+..|.-- +++++..+.|+.+ +.|+.++.++ . .+.++++++.+++||....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~ 65 (221)
T PRK01130 9 VSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKR 65 (221)
T ss_pred EEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEec
Confidence 3455544 3556777777754 4578888873 1 356677777778998644331
Q ss_pred C-CC----hhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcC
Q 023070 86 F-PN----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 160 (287)
Q Consensus 86 g-~~----~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~g 160 (287)
. ++ .....+.++.+.++|++.|.+-...... .. +....+.++.+++..++|++. ++.+.+++.++.+ .|
T Consensus 66 d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p~--~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~~-~G 139 (221)
T PRK01130 66 DYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-PD--GETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQK-LG 139 (221)
T ss_pred CCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-CC--CCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHH-cC
Confidence 1 00 0112356788899999988775432210 00 012235566666535677774 6789999987776 69
Q ss_pred ccEEEEe
Q 023070 161 CEGVLSA 167 (287)
Q Consensus 161 ad~VmiG 167 (287)
+|.+.++
T Consensus 140 ~d~i~~~ 146 (221)
T PRK01130 140 FDFIGTT 146 (221)
T ss_pred CCEEEcC
Confidence 9999774
No 399
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=95.53 E-value=0.29 Score=43.08 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=71.5
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~ 133 (287)
|=.+..+.+.+.++++.+++. ++.||+=+- ++ .+-++...+.|++.|-+|.......... .....+.+++
T Consensus 105 Gldv~~~~~~l~~~i~~L~~~-gIrVSLFid--P~----~~qi~~A~~~GAd~VELhTG~yA~a~~~---~~~~el~~~~ 174 (239)
T PRK05265 105 GLDVAGQFDKLKPAIARLKDA-GIRVSLFID--PD----PEQIEAAAEVGADRIELHTGPYADAKTE---AEAAELERIA 174 (239)
T ss_pred cchhhcCHHHHHHHHHHHHHC-CCEEEEEeC--CC----HHHHHHHHHhCcCEEEEechhhhcCCCc---chHHHHHHHH
Confidence 567778889999999998654 677765542 22 2334556689999999996554322111 1122233332
Q ss_pred ------hhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 134 ------NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 134 ------~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
...++-|-+..|+ +++.+..+..-.+..=|-||.+++.+-
T Consensus 175 ~aa~~a~~lGL~VnAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~A 220 (239)
T PRK05265 175 KAAKLAASLGLGVNAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARA 220 (239)
T ss_pred HHHHHHHHcCCEEecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHH
Confidence 2346777777777 578887765556788899999888653
No 400
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.50 E-value=0.098 Score=45.32 Aligned_cols=88 Identities=17% Similarity=0.289 Sum_probs=66.4
Q ss_pred cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc-EEEecCCCCHHHHHHHH
Q 023070 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCL 156 (287)
Q Consensus 78 pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-Vi~nGgI~s~~da~~~l 156 (287)
++..=+|. .+.++..++++.+.+.|+..+-|+-++. ...+.++.+++..+.+ +++.|.|.+.+++..++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~---------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSP---------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCc---------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 33333443 4668899999999999999999985543 2346788888776644 78999999999999999
Q ss_pred HhcCccEEEEehhhhhCccchhc
Q 023070 157 EETGCEGVLSAESLLENPALFAG 179 (287)
Q Consensus 157 ~~~gad~VmiGR~~l~nP~lf~~ 179 (287)
+ .|+|+++.+- .|+.+.+.
T Consensus 81 ~-aGA~fivsp~---~~~~v~~~ 99 (206)
T PRK09140 81 D-AGGRLIVTPN---TDPEVIRR 99 (206)
T ss_pred H-cCCCEEECCC---CCHHHHHH
Confidence 8 5999999863 45555443
No 401
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=95.48 E-value=0.3 Score=43.88 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH
Q 023070 17 ANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY 95 (287)
Q Consensus 17 g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~ 95 (287)
-.|++...+-|+ .+++|+|.||||++.+ ....++.+..+++.+++.+++||++... + .+.
T Consensus 21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~------~-~~v 81 (261)
T PRK07535 21 AKDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSP------N-PAA 81 (261)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCC------C-HHH
Confidence 356666666555 6788999999998732 1345778999999998888999998832 1 233
Q ss_pred HHHHHHc--CCCEE
Q 023070 96 AKMLEDA--GCSLL 107 (287)
Q Consensus 96 a~~l~~~--G~~~I 107 (287)
++...++ |++.|
T Consensus 82 ~eaaL~~~~G~~iI 95 (261)
T PRK07535 82 IEAGLKVAKGPPLI 95 (261)
T ss_pred HHHHHHhCCCCCEE
Confidence 4444444 87765
No 402
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.48 E-value=0.75 Score=41.63 Aligned_cols=126 Identities=13% Similarity=0.001 Sum_probs=79.9
Q ss_pred cCCCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 16 CANDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 16 ~g~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+.=|.+.+.+-++ +++.|+|+|=++- ..|-+..-..+.-.++++.+.+..+ +|.+-+. ..+..++++
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~G----------stGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~ 82 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAG----------TTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIE 82 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcc----------cCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHH
Confidence 3458888888887 4567999999982 2344444455555666666655554 3544432 245689999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.+++.|+|++.+..-...... +...-.++++.+.+ ++||+ + +|---+++.+.++.+
T Consensus 83 ~a~~a~~~Gad~v~v~~P~y~~~~--~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 83 LARAAKSFGIYAIASLPPYYFPGI--PEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCC--CHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 999999999999988643211100 00122356667766 78876 3 344567888777775
No 403
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=95.45 E-value=0.11 Score=43.71 Aligned_cols=94 Identities=14% Similarity=0.296 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcc-CC-cEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh-CCCc
Q 023070 64 VKSLVEKLALNL-NV-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIP 139 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~-pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ip 139 (287)
+.+.++++++.. .. +|.|-... .+-++.+.++|+|.|-+-.-+ +.++ +.++.++.. .++.
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-------~ee~~ea~~~g~d~I~lD~~~---------~~~~~~~v~~l~~~~~~v~ 129 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-------LEEAEEALEAGADIIMLDNMS---------PEDLKEAVEELRELNPRVK 129 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-------HHHHHHHHHTT-SEEEEES-C---------HHHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-------HHHHHHHHHhCCCEEEecCcC---------HHHHHHHHHHHhhcCCcEE
Confidence 456666666654 23 36666432 233555667999999886332 1222 223333322 3588
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++|||+ ++.+.++.+ +|+|.+.+|...+.-|+
T Consensus 130 ie~SGGI~-~~ni~~ya~-~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 130 IEASGGIT-LENIAEYAK-TGVDVISVGSLTHSAPP 163 (169)
T ss_dssp EEEESSSS-TTTHHHHHH-TT-SEEEECHHHHSBE-
T ss_pred EEEECCCC-HHHHHHHHh-cCCCEEEcChhhcCCcc
Confidence 99999994 688888887 79999999987666554
No 404
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.28 Score=44.39 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHc-CCCCEEEEe-ccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDIN-LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~G 103 (287)
|++++ .||.+|-+- .|+-...-..|. | ....+.+.+.++.|...+++||+|.+-.|+. ..+....++.++++|
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~-~---~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG 106 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDL-G---ITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAG 106 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCcc-c---cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcC
Confidence 55554 599999886 222221111221 1 1236677888888888999999999988764 456778888999999
Q ss_pred CCEEEEeccCCC-------CcCCCCccccHHHHHHHHhhC-CCcEEEecC-----CCCHHHHH----HHHHhcCccEEEE
Q 023070 104 CSLLAVHGRTRD-------EKDGKKFRADWNAIKAVKNAL-RIPVLANGN-----VRHMEDVQ----KCLEETGCEGVLS 166 (287)
Q Consensus 104 ~~~I~vh~rt~~-------~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg-----I~s~~da~----~~l~~~gad~Vmi 166 (287)
+.++++-.-... .+.-.+...-.+.|+.+++.. +.+++.+.. +...+++. .+.+ .|||++..
T Consensus 107 ~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e-AGAD~if~ 185 (289)
T COG2513 107 AAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE-AGADAIFP 185 (289)
T ss_pred cceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH-cCCcEEcc
Confidence 999998432221 111111011123444455443 234443321 11134443 3333 69999876
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
..+.++..|+++..
T Consensus 186 --~al~~~e~i~~f~~ 199 (289)
T COG2513 186 --EALTDLEEIRAFAE 199 (289)
T ss_pred --ccCCCHHHHHHHHH
Confidence 57778887777654
No 405
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=95.42 E-value=2.5 Score=40.14 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=82.0
Q ss_pred CHHHHHH-HHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCc--EEEEecCCCChhhHH
Q 023070 19 DPEILLN-AAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVP--VSCKIRVFPNLQDTI 93 (287)
Q Consensus 19 ~~~~~~~-aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~p--v~vKiR~g~~~~~~~ 93 (287)
-+|+.++ .++ .++.|.|.+.|- ..+||++-+..-++++++.- ..- ++.-+..-.+.+..+
T Consensus 95 yaDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv 159 (472)
T COG5016 95 YADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYV 159 (472)
T ss_pred CchHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHH
Confidence 4555555 344 456788877763 23688888888888877642 122 222223334667889
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe----cCCCCHHHHHHHHHhcCccEEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n----GgI~s~~da~~~l~~~gad~Vm 165 (287)
++++.+.+.|+|.|++..-..- . ....-++.++.+|+.+++||..- -|+.. -...++++ .|+|++=
T Consensus 160 ~~akel~~~g~DSIciKDmaGl--l--tP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~-m~ylkAvE-AGvD~iD 229 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMAGL--L--TPYEAYELVKAIKKELPVPVELHTHATSGMAE-MTYLKAVE-AGVDGID 229 (472)
T ss_pred HHHHHHHHcCCCEEEeeccccc--C--ChHHHHHHHHHHHHhcCCeeEEecccccchHH-HHHHHHHH-hCcchhh
Confidence 9999999999999999643221 0 11245799999999999999854 45533 33445666 4898863
No 406
>PLN02417 dihydrodipicolinate synthase
Probab=95.41 E-value=0.46 Score=43.07 Aligned_cols=124 Identities=11% Similarity=0.003 Sum_probs=75.9
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
=|.+.+.+-++ .++.|+++|=+| |..|-+..-..+.-.++++.+.+.+ .+||.+-+.. .+..++++
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~ 87 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIH 87 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHH
Confidence 36777777777 456799999998 2234333334444455666555444 4788877532 35678999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-E-----ecCCCCHHHHHHHHH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A-----NGNVRHMEDVQKCLE 157 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-~-----nGgI~s~~da~~~l~ 157 (287)
+++.++++|+|++.+..-.... .+...-.++++.+.+.. ||+ + .|---+++.+.++.+
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~~---~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYGK---TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccCC---CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 9999999999999886432211 00012235556666654 765 2 233345666666654
No 407
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=95.41 E-value=0.16 Score=45.50 Aligned_cols=79 Identities=24% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...+-|+ .+++|+|.||||+++..+....- ......+.+..+++.+++..++||++... + .+.+
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~----~~~~E~~rl~~~v~~l~~~~~~piSIDT~------~-~~v~ 89 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV----SVEEELERVIPVLRALAGEPDVPISVDTF------N-AEVA 89 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC----CHHHHHHHHHHHHHHHHhcCCCeEEEeCC------c-HHHH
Confidence 36677666665 67889999999987665421100 11223467888888888877899988731 1 3456
Q ss_pred HHHHHcCCCEE
Q 023070 97 KMLEDAGCSLL 107 (287)
Q Consensus 97 ~~l~~~G~~~I 107 (287)
+...+.|++.|
T Consensus 90 ~aaL~~g~~iI 100 (258)
T cd00423 90 EAALKAGADII 100 (258)
T ss_pred HHHHHhCCCEE
Confidence 66667787755
No 408
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.40 E-value=0.51 Score=43.01 Aligned_cols=106 Identities=20% Similarity=0.292 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcC--CCEEEEeccCCCCcC-C----CCccccHHHHHHHH
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKD-G----KKFRADWNAIKAVK 133 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G--~~~I~vh~rt~~~~~-~----~~~~~~~~~i~~i~ 133 (287)
.+...+.+....+..+.|+.+-+. |.+.++..+.++.+++++ +++|.+--....... + .....-.+.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 344444444444445678887763 567788899999999874 999988422111110 0 00011246677888
Q ss_pred hhCCCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 134 NALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 134 ~~~~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
+.+++||.+= .++.+..++.+.+++.|+|++.+.
T Consensus 154 ~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 154 DKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred HhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 8778888754 344445555666777899999874
No 409
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.40 E-value=0.66 Score=40.05 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=78.6
Q ss_pred EEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---
Q 023070 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F--- 86 (287)
Q Consensus 12 ~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g--- 86 (287)
++.++..++++...|. +.|+|-|||+-. .. .|+ | .|. ..+++.+++..++||.|=||+ |
T Consensus 2 ~lEvcv~s~~~a~~A~---~~GAdRiELc~~-----l~---~GG-l--TPS--~g~i~~~~~~~~ipv~vMIRpr~gdF~ 65 (201)
T PF03932_consen 2 ILEVCVESLEDALAAE---AGGADRIELCSN-----LE---VGG-L--TPS--LGLIRQAREAVDIPVHVMIRPRGGDFV 65 (201)
T ss_dssp EEEEEESSHHHHHHHH---HTT-SEEEEEBT-----GG---GT--B-------HHHHHHHHHHTTSEEEEE--SSSS-S-
T ss_pred eEEEEeCCHHHHHHHH---HcCCCEEEECCC-----cc---CCC-c--CcC--HHHHHHHHhhcCCceEEEECCCCCCcc
Confidence 4556666766655543 579999999831 11 121 2 232 234555555778998888887 3
Q ss_pred CChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEec---CCCCHHHHHHHHHhc
Q 023070 87 PNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG---NVRHMEDVQKCLEET 159 (287)
Q Consensus 87 ~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nG---gI~s~~da~~~l~~~ 159 (287)
++.. ...+-++.+.++|++.+.+-.=+.+. ..|.+.++++.+.. +.|+...= -+.++..+.+.+...
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg------~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l 139 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDG------EIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL 139 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETTS------SB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCC------CcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc
Confidence 2222 23455677889999999886544432 47888888887754 68888654 456777777777667
Q ss_pred CccEEEEe
Q 023070 160 GCEGVLSA 167 (287)
Q Consensus 160 gad~VmiG 167 (287)
|++.|.-.
T Consensus 140 G~~rVLTS 147 (201)
T PF03932_consen 140 GFDRVLTS 147 (201)
T ss_dssp T-SEEEES
T ss_pred CCCEEECC
Confidence 99988754
No 410
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.40 E-value=0.13 Score=44.40 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=74.7
Q ss_pred CCHHHHHHHH---HH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHH
Q 023070 18 NDPEILLNAA---RR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTI 93 (287)
Q Consensus 18 ~~~~~~~~aA---~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~ 93 (287)
.+++++.... +. .+.|+|+|-+=+.-|. |. =|.+.+.++++... +.|++. .|..+...+..
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~d--------g~---iD~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~ 130 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALTED--------GE---IDEEALEELIEAAG---GMPVTF-HRAFDEVPDPE 130 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BETT--------SS---B-HHHHHHHHHHHT---TSEEEE--GGGGGSSTHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCC--------CC---cCHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHH
Confidence 4555555544 33 3469999887543221 11 35667777777653 688888 45544344566
Q ss_pred HHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 94 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 94 ~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+-.+.+.+.|++.|--+|....- ....+.++++.+. -++.|+..|||+. +.+..+++.+|+.-+
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred HHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 66778888999999777665321 2345667766554 3688999999975 888888888888765
No 411
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=95.38 E-value=1.2 Score=37.89 Aligned_cols=129 Identities=22% Similarity=0.190 Sum_probs=81.4
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEEEecCCCCh
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSCKIRVFPNL 89 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~vKiR~g~~~ 89 (287)
+++-|=--++++..+.++.+.++++.|+++. |. .+. +| .+.++.+++. .++|+.+-.-.. +.
T Consensus 3 ~~~a~d~~~~~~~~~~~~~l~~~i~~ieig~--~~--~~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~~ 65 (202)
T cd04726 3 LQVALDLLDLEEALELAKKVPDGVDIIEAGT--PL--IKS--EG----------MEAVRALREAFPDKIIVADLKTA-DA 65 (202)
T ss_pred eEEEEcCCCHHHHHHHHHHhhhcCCEEEcCC--HH--HHH--hC----------HHHHHHHHHHCCCCEEEEEEEec-cc
Confidence 3455544578888888887766699999952 22 111 12 4566666664 477877632221 11
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe-cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n-GgI~s~~da~~~l~~~gad~VmiG 167 (287)
. ..+++.+.++|++++++|+.... ...-+.++.+++ .++++++. =+..|++++.+++. .|+|.|.++
T Consensus 66 ~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 66 G--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVDLIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred c--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 1 23568888999999999975421 011234455554 47777664 67889999988666 599999885
No 412
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=95.38 E-value=0.38 Score=43.82 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=83.1
Q ss_pred HHHHc-CCCCEEEEeccCCh-hhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDINLGCPQ-RIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~-~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G 103 (287)
|++++ .||++|=+-=.+=. ..-..|. | ++ ..+.+.+.++.|...+++||++.+-.|. +..+....++.++++|
T Consensus 26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~-g--~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG 101 (285)
T TIGR02317 26 ALLAERAGFEAIYLSGAAVAASLGLPDL-G--IT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAG 101 (285)
T ss_pred HHHHHHcCCCEEEEcHHHHHHhCCCCCC-C--CC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcC
Confidence 44443 59999888621110 1111121 1 22 5566677788888888999999998875 3567778899999999
Q ss_pred CCEEEEeccCCCCcCCC-Ccc--cc----HHHHHHHHhhC-CCcEEEecCCC-----CHHHHHHHH---HhcCccEEEEe
Q 023070 104 CSLLAVHGRTRDEKDGK-KFR--AD----WNAIKAVKNAL-RIPVLANGNVR-----HMEDVQKCL---EETGCEGVLSA 167 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~-~~~--~~----~~~i~~i~~~~-~ipVi~nGgI~-----s~~da~~~l---~~~gad~VmiG 167 (287)
+.+|++-..+...+-+. .+. .+ ...|+.++++. +.+++.+.... ..+++.+-. .+.|||+|++-
T Consensus 102 ~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 102 AAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred CeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 99999965432111010 011 11 22333333332 34455444322 244443222 23599999983
Q ss_pred hhhhhCccchhchh
Q 023070 168 ESLLENPALFAGFR 181 (287)
Q Consensus 168 R~~l~nP~lf~~~~ 181 (287)
.+.++...+++.
T Consensus 182 --g~~~~e~i~~~~ 193 (285)
T TIGR02317 182 --ALTSLEEFRQFA 193 (285)
T ss_pred --CCCCHHHHHHHH
Confidence 245555555443
No 413
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.33 E-value=0.17 Score=45.84 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=57.7
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHhh---CCCc
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA---LRIP 139 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~~---~~ip 139 (287)
.+.++.+++.. ..+|.|-++ ..+-+..+.++|+|.|-+...+. .++ +.+..+++. .++.
T Consensus 170 ~~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~~---------e~l~~~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 170 EEAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMTP---------EEIREVIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCCH---------HHHHHHHHHHHhcCcCCCEE
Confidence 34444444432 345555542 23445566689999887764422 222 222223331 3577
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+.++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 234 leaSGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 234 IEVSGGI-TPENIEEYAK-LDVDVISLGALTHSVRN 267 (278)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 9999999 7899998887 79999999976553444
No 414
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=95.32 E-value=0.78 Score=39.24 Aligned_cols=126 Identities=22% Similarity=0.200 Sum_probs=76.6
Q ss_pred EEEEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcE--EEEecCCC
Q 023070 11 LFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPV--SCKIRVFP 87 (287)
Q Consensus 11 ~~~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv--~vKiR~g~ 87 (287)
+++-+=..++++..+.++.+..|.+.|++.. |. ....-.++++.+++.. +..+ .+|+.
T Consensus 2 l~~alD~~~~~~a~~~~~~l~~~v~~iev~~--~l--------------~~~~g~~~i~~l~~~~~~~~i~~d~k~~--- 62 (206)
T TIGR03128 2 LQLALDLLDIEEALELAEKVADYVDIIEIGT--PL--------------IKNEGIEAVKEMKEAFPDRKVLADLKTM--- 62 (206)
T ss_pred eEEEecCCCHHHHHHHHHHcccCeeEEEeCC--HH--------------HHHhCHHHHHHHHHHCCCCEEEEEEeec---
Confidence 4556667788998998887766899999941 11 1111235566665542 3334 44432
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc-HHHHHHHHhhCCCcEEEe-cCCCC-HHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLAN-GNVRH-MEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~~ipVi~n-GgI~s-~~da~~~l~~~gad~V 164 (287)
+... ..++.+.++|+++|++|+-+. ..+ -+.+..+++ .+++++.. =+..+ .+++..+.+ .|+|.|
T Consensus 63 d~~~--~~~~~~~~~Gad~i~vh~~~~--------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~-~g~d~v 130 (206)
T TIGR03128 63 DAGE--YEAEQAFAAGADIVTVLGVAD--------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELKE-LGADYI 130 (206)
T ss_pred cchH--HHHHHHHHcCCCEEEEeccCC--------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHHH-cCCCEE
Confidence 2121 137788899999999996532 111 234445444 57888764 23344 477777776 599999
Q ss_pred EEe
Q 023070 165 LSA 167 (287)
Q Consensus 165 miG 167 (287)
.+.
T Consensus 131 ~~~ 133 (206)
T TIGR03128 131 GVH 133 (206)
T ss_pred EEc
Confidence 774
No 415
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.29 E-value=0.28 Score=42.44 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=64.0
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++++.+++.+.+.|++.|-|+-|+. .-.+.|+.+++...--+|+.|=|-+++++.++.+ .|++.+..
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEITl~sp---------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~-aGa~fiVs 91 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEITLRTP---------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIA-AGAQFIVS 91 (211)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecCCC---------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHH-cCCCEEEC
Confidence 4678999999999999999999987753 3458899999887766899999999999999998 59998763
Q ss_pred ehhhhhCccchh
Q 023070 167 AESLLENPALFA 178 (287)
Q Consensus 167 GR~~l~nP~lf~ 178 (287)
=+ -||.+.+
T Consensus 92 -P~--~~~ev~~ 100 (211)
T COG0800 92 -PG--LNPEVAK 100 (211)
T ss_pred -CC--CCHHHHH
Confidence 11 2555554
No 416
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.28 E-value=0.16 Score=47.05 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHH--cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-C
Q 023070 61 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 137 (287)
Q Consensus 61 ~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~--~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ 137 (287)
++.-.+.++.++.....-+.| ..|... +..+.++.+.+ +|+|.|+|.--.. . ...-.+.++.+++.. +
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~-~d~er~~~L~~~~~g~D~iviD~AhG-----h-s~~~i~~ik~ik~~~P~ 151 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMV--STGTSD-ADFEKTKQILALSPALNFICIDVANG-----Y-SEHFVQFVAKAREAWPD 151 (346)
T ss_pred HHHHHHHHHhccccccceEEE--EecCCH-HHHHHHHHHHhcCCCCCEEEEECCCC-----c-HHHHHHHHHHHHHhCCC
Confidence 444555555555333222333 333343 33455666666 5999998842110 0 023467899999875 5
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 138 ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
++|| .|+|-|++-++.+++ .|||+|=+|=
T Consensus 152 ~~vI-aGNV~T~e~a~~Li~-aGAD~vKVGI 180 (346)
T PRK05096 152 KTIC-AGNVVTGEMVEELIL-SGADIVKVGI 180 (346)
T ss_pred CcEE-EecccCHHHHHHHHH-cCCCEEEEcc
Confidence 6655 499999999999888 6999986653
No 417
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.27 E-value=0.13 Score=43.70 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=63.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.++..++++.+.+.|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++ .|+|+++.
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~-~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA-AGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH-cCCCEEEc
Confidence 4567889999999999999999985432 3456788888876545688899999999999998 69999987
Q ss_pred ehhhhhCccchhch
Q 023070 167 AESLLENPALFAGF 180 (287)
Q Consensus 167 GR~~l~nP~lf~~~ 180 (287)
+- .+|.+....
T Consensus 83 p~---~~~~~~~~~ 93 (190)
T cd00452 83 PG---LDPEVVKAA 93 (190)
T ss_pred CC---CCHHHHHHH
Confidence 63 356655543
No 418
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.25 E-value=0.14 Score=44.65 Aligned_cols=85 Identities=26% Similarity=0.370 Sum_probs=66.5
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
+| +.+.+++.++++.+.+.|++.|-|+-++. .-.+.|+.+++..+--+++.|-|.+.++++.+++ .|++
T Consensus 21 ~r-~~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~-aGA~ 89 (212)
T PRK05718 21 IV-INKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIE-AGAQ 89 (212)
T ss_pred EE-cCCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHH-cCCC
Confidence 44 45778999999999999999999984432 2357788888766556899999999999999998 5999
Q ss_pred EEEEehhhhhCccchhchh
Q 023070 163 GVLSAESLLENPALFAGFR 181 (287)
Q Consensus 163 ~VmiGR~~l~nP~lf~~~~ 181 (287)
.++. --.+|.+.+..+
T Consensus 90 Fivs---P~~~~~vi~~a~ 105 (212)
T PRK05718 90 FIVS---PGLTPPLLKAAQ 105 (212)
T ss_pred EEEC---CCCCHHHHHHHH
Confidence 9875 235667666544
No 419
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.23 E-value=0.083 Score=51.88 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCC-cEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i-pVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
.+..+.++.|.++|+|.|.|. +.... . ..-.+.++++++..+. -.+..|.|-|+++++.+++ .|||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~g~-~---~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~-aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSEGY-S---EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE-AGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Ccccc-c---HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH-cCCCEEEECC
Confidence 356788999999999999886 22110 0 1235788899887653 2467799999999999998 6999998864
No 420
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.23 E-value=0.57 Score=41.57 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=85.3
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccC-CcEEEEecCCC--ChhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~pv~vKiR~g~--~~~~~~~~a~~l~~~ 102 (287)
|++++ .|||.|=+-=. ..... -+|-....-..+.+...+++|++.+. .||++.+-.|. +.+++.+.++++.++
T Consensus 25 A~i~e~aG~dai~v~~s--~~a~~-~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~a 101 (240)
T cd06556 25 AKQFADAGLNVMLVGDS--QGMTV-AGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRA 101 (240)
T ss_pred HHHHHHcCCCEEEEChH--HHHHh-cCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 44444 48888877421 11111 12222222356777888888888775 79999998874 336788889999999
Q ss_pred CCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCC---------------CHHHHHHHH------HhcCc
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR---------------HMEDVQKCL------EETGC 161 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~---------------s~~da~~~l------~~~ga 161 (287)
|+++|.+-+.. ...+.++.+++. .+||++==|.. +.+.+.+++ ++.||
T Consensus 102 Ga~gv~iED~~----------~~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGA 170 (240)
T cd06556 102 GAAGVKIEGGE----------WHIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGA 170 (240)
T ss_pred CCcEEEEcCcH----------HHHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCC
Confidence 99999996531 122446666554 47888665551 223333333 34699
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
|+|.+= +. ++...+++.
T Consensus 171 d~i~~e-~~--~~e~~~~i~ 187 (240)
T cd06556 171 DLIVME-CV--PVELAKQIT 187 (240)
T ss_pred CEEEEc-CC--CHHHHHHHH
Confidence 999984 22 555555554
No 421
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=95.23 E-value=0.067 Score=52.19 Aligned_cols=70 Identities=33% Similarity=0.372 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR 168 (287)
+..+.++.|.++|++.|.+..-.. .+ ..-.+.++++++.. ++|||+ |.+-|.+.+..+.+ .|||+|-+|=
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g-----~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~-~G~d~i~vg~ 295 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHG-----HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLE-AGANIIKVGV 295 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCC-----Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHH-hCCCEEEECC
Confidence 556888999999999998842211 00 23357788998864 799999 88999999999998 6999987653
No 422
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.21 E-value=0.084 Score=51.93 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+..+-++.|.++|+|.|.+..-. +. ...-|+.++++++.. +++|++ |+|.|.+++..+++ .|||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~-aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQ-AGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHH-cCcCEEEEC
Confidence 355678899999999999886421 11 124578999999875 455554 89999999999998 699999775
No 423
>TIGR03586 PseI pseudaminic acid synthase.
Probab=95.18 E-value=0.7 Score=42.94 Aligned_cols=100 Identities=15% Similarity=0.286 Sum_probs=66.4
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC-CEEEEeccCCCCcCCCCccccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~-~~I~vh~rt~~~~~~~~~~~~~~~i~~i 132 (287)
||.-+.+..++..+-+ .+.||.+|... .+.++....++.+.+.|. +.+.+|+.+.-+ ......|+..|..+
T Consensus 117 ~S~~~~n~~LL~~va~-----~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP--~~~~~~nL~~i~~l 188 (327)
T TIGR03586 117 ASFEITDLPLIRYVAK-----TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKCTSSYP--APLEDANLRTIPDL 188 (327)
T ss_pred CCccccCHHHHHHHHh-----cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEecCCCCC--CCcccCCHHHHHHH
Confidence 4544677777666543 48999999766 467788888888889998 456668643221 11224789999999
Q ss_pred HhhCCCcEEEecCCCCHHHHHHHHHhcCcc
Q 023070 133 KNALRIPVLANGNVRHMEDVQKCLEETGCE 162 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~s~~da~~~l~~~gad 162 (287)
++..++||..++--....-...+.. .||+
T Consensus 189 k~~f~~pVG~SDHt~G~~~~~aAva-~GA~ 217 (327)
T TIGR03586 189 AERFNVPVGLSDHTLGILAPVAAVA-LGAC 217 (327)
T ss_pred HHHhCCCEEeeCCCCchHHHHHHHH-cCCC
Confidence 9988999977763333333334444 4776
No 424
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=95.17 E-value=0.42 Score=41.97 Aligned_cols=114 Identities=16% Similarity=0.184 Sum_probs=72.9
Q ss_pred ccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHH
Q 023070 53 YGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKA 131 (287)
Q Consensus 53 ~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~ 131 (287)
.|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|............ ...++.+..
T Consensus 101 gGldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP--d----~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~ 173 (234)
T cd00003 101 GGLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP--D----PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAK 173 (234)
T ss_pred ccchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC--C----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHH
Confidence 3667778889999999998765 6777765422 2 234556679999999999654432211100 111222222
Q ss_pred ---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 132 ---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 132 ---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.....++-|-+..|+ +++.+..+.+-.+..=|-||.+++.+-
T Consensus 174 aa~~a~~~GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~A 218 (234)
T cd00003 174 AAKLARELGLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISRA 218 (234)
T ss_pred HHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHHH
Confidence 222346767776777 578887777667889999999888654
No 425
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=95.17 E-value=0.47 Score=41.79 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=71.2
Q ss_pred cccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCc-cccHHHHHHH
Q 023070 54 GAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAV 132 (287)
Q Consensus 54 G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~-~~~~~~i~~i 132 (287)
|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|............ ...++.+...
T Consensus 102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP--~----~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~a 174 (237)
T TIGR00559 102 GLDVARLKDKLCELVKRFHAA-GIEVSLFIDA--D----KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKA 174 (237)
T ss_pred CchhhhCHHHHHHHHHHHHHC-CCEEEEEeCC--C----HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHH
Confidence 556777889999999998654 6777655322 2 234556669999999999655432211100 1112222222
Q ss_pred ---HhhCCCcEEEecCCCCHHHHHHHHHhcC-ccEEEEehhhhhCc
Q 023070 133 ---KNALRIPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENP 174 (287)
Q Consensus 133 ---~~~~~ipVi~nGgI~s~~da~~~l~~~g-ad~VmiGR~~l~nP 174 (287)
....++-|-+..|+ +++.+..+...-+ .+=|-||.+++.+-
T Consensus 175 a~~A~~lGL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~A 219 (237)
T TIGR00559 175 SVHAHSLGLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADA 219 (237)
T ss_pred HHHHHHcCCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHH
Confidence 22356777777777 5788877766555 88899999988654
No 426
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=95.15 E-value=0.25 Score=45.13 Aligned_cols=149 Identities=11% Similarity=0.141 Sum_probs=84.0
Q ss_pred HHHHc-CCCCEEEEe-ccCC-hhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDIN-LGCP-QRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP-~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~ 102 (287)
|++++ .||++|-+- .++- ...-..|. | +-..+.+.+.++.|.+.+++||++.+-.|. +..+....++.++++
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g---~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~a 105 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAAASLGLPDL-G---ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKA 105 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHhHhcCCCCC-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 45554 599998775 2222 11111221 1 234566677888888889999999998875 556777889999999
Q ss_pred CCCEEEEeccCCCCcCCC-Ccc--cc-HHHHHHH---HhhC-CCcEEEec--CCCC---HHHHHHHH---HhcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDGK-KFR--AD-WNAIKAV---KNAL-RIPVLANG--NVRH---MEDVQKCL---EETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~-~~~--~~-~~~i~~i---~~~~-~ipVi~nG--gI~s---~~da~~~l---~~~gad~Vmi 166 (287)
|+.+|++-......+.+. .+. .+ -+.+.+| ++.. +.+++.+. +... .+++.+-. .+.|||+|++
T Consensus 106 Gaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi 185 (292)
T PRK11320 106 GAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFP 185 (292)
T ss_pred CCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 999999954331100010 010 11 1333443 3332 34444443 3322 44443221 2369999998
Q ss_pred ehhhhhCccchhchh
Q 023070 167 AESLLENPALFAGFR 181 (287)
Q Consensus 167 GR~~l~nP~lf~~~~ 181 (287)
- .+.++.-++++.
T Consensus 186 ~--~~~~~~~i~~~~ 198 (292)
T PRK11320 186 E--AMTELEMYRRFA 198 (292)
T ss_pred c--CCCCHHHHHHHH
Confidence 4 355666555443
No 427
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.15 E-value=1.2 Score=40.77 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=85.7
Q ss_pred CCCEEEEe---cCCCHHHHHHHHH-HHcCCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhc-cCCcEEE
Q 023070 8 DRPLFVQF---CANDPEILLNAAR-RVEPYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALN-LNVPVSC 81 (287)
Q Consensus 8 ~~p~~~Qi---~g~~~~~~~~aA~-~~~~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~pv~v 81 (287)
+.||++-+ +|+.+ ...+.++ ..+.|+.+|.|-=.. |..+--.. -|..-+-+++...+-|++++++ .+.++.+
T Consensus 75 ~lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~-~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I 152 (290)
T TIGR02321 75 SIPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRT-DGRQELVRIEEFQGKIAAATAARADRDFVV 152 (290)
T ss_pred CCCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCccccccc-CCCccccCHHHHHHHHHHHHHhCCCCCEEE
Confidence 56888776 35555 5777776 456799999997532 32210000 0211123444444555555443 3445555
Q ss_pred EecC-----CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC--CcEEEec---CCCCHHH
Q 023070 82 KIRV-----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANG---NVRHMED 151 (287)
Q Consensus 82 KiR~-----g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipVi~nG---gI~s~~d 151 (287)
--|+ +...+++++=++...++|+|.|-+++.. .+.+.++++.+.++ +||.... ...+.++
T Consensus 153 ~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~----------~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~ 222 (290)
T TIGR02321 153 IARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----------KTPDEILAFVKSWPGKVPLVLVPTAYPQLTEAD 222 (290)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHH
Confidence 4444 2345788888999999999999998632 23466778877765 5886543 2334444
Q ss_pred HHHHHHhcC-ccEEEEehhh
Q 023070 152 VQKCLEETG-CEGVLSAESL 170 (287)
Q Consensus 152 a~~~l~~~g-ad~VmiGR~~ 170 (287)
+. + .| +..|..|-.+
T Consensus 223 l~---~-lg~~~~v~~g~~~ 238 (290)
T TIGR02321 223 IA---A-LSKVGIVIYGNHA 238 (290)
T ss_pred HH---H-hcCCcEEEEChHH
Confidence 33 2 34 6667777444
No 428
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=95.10 E-value=0.1 Score=50.88 Aligned_cols=109 Identities=18% Similarity=0.318 Sum_probs=73.6
Q ss_pred HHHHHHHhhccCCcE-EEEecCC-CChhhHHHHHHHHHHcCCCEEEEeccCCCCc---------------------CCCC
Q 023070 65 KSLVEKLALNLNVPV-SCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------DGKK 121 (287)
Q Consensus 65 ~~iv~~v~~~~~~pv-~vKiR~g-~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---------------------~~~~ 121 (287)
+++|+..|.. +.|+ .|-|..| ++.+++.++++.|-+.|+.++.+.+.+.++- ....
T Consensus 111 krLv~kara~-G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraG 189 (717)
T COG4981 111 KRLVQKARAS-GAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAG 189 (717)
T ss_pred HHHHHHHHhc-CCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccC
Confidence 4566665543 3333 2333444 4678889999999889999998876543220 0111
Q ss_pred ccccHH--------HHHHHHhhCCCcEEEecCCCCHHHHHHHHHh----------cCccEEEEehhhhhCc
Q 023070 122 FRADWN--------AIKAVKNALRIPVLANGNVRHMEDVQKCLEE----------TGCEGVLSAESLLENP 174 (287)
Q Consensus 122 ~~~~~~--------~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~----------~gad~VmiGR~~l~nP 174 (287)
|+..|+ ...++++.-+|-+++.|||.+++++...|.- .-.||+.+|+++|.--
T Consensus 190 GHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 190 GHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred CccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence 234443 2356777778999999999999999998841 1489999999998643
No 429
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=95.07 E-value=0.49 Score=43.79 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=65.1
Q ss_pred CCHHHHHHHHH-HHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC----------
Q 023070 18 NDPEILLNAAR-RVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV---------- 85 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~---------- 85 (287)
.++++..+.|. +++ .|+++|.|--|+ ....++|+++. ..++||.--+.+
T Consensus 110 ~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGG 170 (332)
T PLN02424 110 SSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGG 170 (332)
T ss_pred CCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcC
Confidence 46777777665 444 689999986221 22345666665 458999844332
Q ss_pred ----CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 86 ----FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 86 ----g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
|.+. ...++-|+.++++|+..|.+-+.. -+..++|.+.++||+|+-|
T Consensus 171 ykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 171 FRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------APVAAAITSALQIPTIGIG 224 (332)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------HHHHHHHHHhCCCCEEeec
Confidence 1222 245677889999999999886442 2478899999999999866
No 430
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.51 Score=40.90 Aligned_cols=119 Identities=20% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCEEEEecCCCHHHHHHHHHH-HcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCC
Q 023070 8 DRPLFVQFCANDPEILLNAARR-VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~-~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g 86 (287)
+.|+|.=|.+.++|+....++. ++.|++.|||-+-.|. ..+.++++++... .+=+..|
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~------------------a~e~I~~l~~~~p---~~lIGAG 70 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA------------------ALEAIRALAKEFP---EALIGAG 70 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC------------------HHHHHHHHHHhCc---ccEEccc
Confidence 5689999999999999999994 5678999999986665 3566666665543 2222222
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
. .-+. +-++.+.++|++++ |++. .+-+.++... ..++|++ =|+.|+.++..+++ .|++.+=
T Consensus 71 T-VL~~-~q~~~a~~aGa~fi-VsP~-----------~~~ev~~~a~-~~~ip~~--PG~~TptEi~~Ale-~G~~~lK 131 (211)
T COG0800 71 T-VLNP-EQARQAIAAGAQFI-VSPG-----------LNPEVAKAAN-RYGIPYI--PGVATPTEIMAALE-LGASALK 131 (211)
T ss_pred c-ccCH-HHHHHHHHcCCCEE-ECCC-----------CCHHHHHHHH-hCCCccc--CCCCCHHHHHHHHH-cChhhee
Confidence 1 1122 33566779999977 4322 2335444443 3466655 58999999999998 5888763
No 431
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.99 E-value=1.3 Score=37.39 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=92.3
Q ss_pred HHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHH-HHHH
Q 023070 21 EILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-AKML 99 (287)
Q Consensus 21 ~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~-a~~l 99 (287)
-.-.+|.+.++-|+|.||+. |-.. ++|-.+..++.+-++++... +.+|+.-+.--+..--+..+ +--.
T Consensus 8 in~eEA~eAieGGAdIiDVK------NP~E----GSLGANFPWvIr~i~Ev~p~-d~~vSAT~GDvpYKPGT~slAalGa 76 (235)
T COG1891 8 INREEAIEAIEGGADIIDVK------NPAE----GSLGANFPWVIREIREVVPE-DQEVSATVGDVPYKPGTASLAALGA 76 (235)
T ss_pred CCHHHHHHHhhCCCceEecc------Cccc----CcccCCChHHHHHHHHhCcc-ceeeeeeecCCCCCCchHHHHHHHh
Confidence 34456666777899999985 1122 34455666655544544322 35666654321211122222 3334
Q ss_pred HHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-----CCcEEEecC-------CCCHHHHHHHHHhcCccEEEEe
Q 023070 100 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGN-------VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 100 ~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipVi~nGg-------I~s~~da~~~l~~~gad~VmiG 167 (287)
.-+|+|+|-|.-.... .+ ...++.++.+.+++ +..|++.|- --+|-++-+.-.+.|||-+|+-
T Consensus 77 av~GaDYiKVGLYg~k---n~--~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvD 151 (235)
T COG1891 77 AVAGADYIKVGLYGTK---NE--EEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVD 151 (235)
T ss_pred HhhCCceEEEeecccc---cH--HHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEe
Confidence 5689999988421110 11 12345555554443 356777772 2345555666667899999999
Q ss_pred hhhhhCccchhchhhhhhccCCccccCCCchhHHHHHHHHHHHHHhCCC
Q 023070 168 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 216 (287)
Q Consensus 168 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 216 (287)
++.-....+|.-.+ .+.+.+|.+.+.+|+.
T Consensus 152 TaiKDGkslFdfm~-------------------~e~l~eFvd~Ah~hGL 181 (235)
T COG1891 152 TAIKDGKSLFDFMD-------------------EEELEEFVDLAHEHGL 181 (235)
T ss_pred cccccchhHHhhhc-------------------HHHHHHHHHHHHHcch
Confidence 98877777775322 3457788888777763
No 432
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.96 E-value=0.62 Score=41.48 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=78.5
Q ss_pred EEecCCCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC--C---C
Q 023070 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV--F---P 87 (287)
Q Consensus 13 ~Qi~g~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g---~ 87 (287)
+-++..++++...| .+.|+|-|||+-.-. .| .+.-.+..+ +.+++.+++||.+=||+ | .
T Consensus 4 lEvcv~s~~~a~~A---~~~GAdRiELc~~L~--------~G-GlTPS~g~i----~~~~~~~~ipv~vMIRPR~gdF~Y 67 (248)
T PRK11572 4 LEICCYSMECALTA---QQAGADRIELCAAPK--------EG-GLTPSLGVL----KSVRERVTIPVHPIIRPRGGDFCY 67 (248)
T ss_pred EEEEECCHHHHHHH---HHcCCCEEEEccCcC--------CC-CcCCCHHHH----HHHHHhcCCCeEEEEecCCCCCCC
Confidence 44555666554333 456999999973211 11 122333344 44445567888877776 3 2
Q ss_pred Chh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecC---CCCHHHHHHHHHhcC
Q 023070 88 NLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN---VRHMEDVQKCLEETG 160 (287)
Q Consensus 88 ~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGg---I~s~~da~~~l~~~g 160 (287)
+.. ...+-++.+.+.|++.|.+-.=+.+. ..|.+.++++.+.. ++|+...=- +.++..+.+.+...|
T Consensus 68 s~~E~~~M~~di~~~~~~GadGvV~G~L~~dg------~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 68 SDGEFAAMLEDIATVRELGFPGLVTGVLDVDG------HVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC------CcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 222 23455677889999999886544432 47777777776654 466665432 345666666555568
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
++.|.-
T Consensus 142 ~~rILT 147 (248)
T PRK11572 142 VARILT 147 (248)
T ss_pred CCEEEC
Confidence 877753
No 433
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.94 E-value=1.4 Score=38.71 Aligned_cols=135 Identities=12% Similarity=0.123 Sum_probs=89.4
Q ss_pred CCCEEEEecCCCHHHHHHHHHHHc-CCCCEEEEec--c--CChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEE
Q 023070 8 DRPLFVQFCANDPEILLNAARRVE-PYCDYVDINL--G--CPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCK 82 (287)
Q Consensus 8 ~~p~~~Qi~g~~~~~~~~aA~~~~-~g~d~IdiN~--g--cP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vK 82 (287)
..++.++|...|+..+.+-.+.++ .|+|.+-+-. | +|+ .-+--.+++.+++ +.|+.|-
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPN---------------itfGp~~i~~i~~--~~~~DvH 74 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPF---------------FTVGAIAIKQFPT--HCFKDVH 74 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc---------------cccCHHHHHHhCC--CCCEEEE
Confidence 457889999999999999988775 4888755542 2 332 2222345566653 5677666
Q ss_pred ecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC---CCcEEEecCCCCHHHHHHHHHhc
Q 023070 83 IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 83 iR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
+-. .+..++++.+.++|++.|++|.-... .-...+..+++.- +.-|..|=+ +..+++..++..
T Consensus 75 LMv----~~P~~~i~~~~~aGad~It~H~Ea~~--------~~~~~l~~Ik~~g~~~kaGlalnP~-Tp~~~i~~~l~~- 140 (228)
T PRK08091 75 LMV----RDQFEVAKACVAAGADIVTLQVEQTH--------DLALTIEWLAKQKTTVLIGLCLCPE-TPISLLEPYLDQ- 140 (228)
T ss_pred ecc----CCHHHHHHHHHHhCCCEEEEcccCcc--------cHHHHHHHHHHCCCCceEEEEECCC-CCHHHHHHHHhh-
Confidence 533 45677889999999999999955221 1125567777652 333445444 678888888885
Q ss_pred CccEEEEehhhhhCccch
Q 023070 160 GCEGVLSAESLLENPALF 177 (287)
Q Consensus 160 gad~VmiGR~~l~nP~lf 177 (287)
+|.|++ +--||.+-
T Consensus 141 -vD~VLi---MtV~PGfg 154 (228)
T PRK08091 141 -IDLIQI---LTLDPRTG 154 (228)
T ss_pred -cCEEEE---EEECCCCC
Confidence 898877 33477754
No 434
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=94.94 E-value=0.15 Score=45.02 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=69.2
Q ss_pred CcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCcccc---HH
Q 023070 51 GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD---WN 127 (287)
Q Consensus 51 ~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~---~~ 127 (287)
-..|=.+..+.+.+.++++.+++. ++.||+=+-. + .+-++...+.|++.|-+|..............+ ++
T Consensus 100 TegGldv~~~~~~l~~~i~~L~~~-gIrvSLFiDP--~----~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~ 172 (239)
T PF03740_consen 100 TEGGLDVAGNRDRLKPVIKRLKDA-GIRVSLFIDP--D----PEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLE 172 (239)
T ss_dssp TTSSB-TCGGHHHHHHHHHHHHHT-T-EEEEEE-S-------HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHH
T ss_pred CCcCChhhcCHHHHHHHHHHHHhC-CCEEEEEeCC--C----HHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHH
Confidence 334667778889999999999874 7777766422 2 344566679999999999554322111000011 12
Q ss_pred HHHH---HHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 128 AIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 128 ~i~~---i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.+.. .....++-|-+..|+ +++.+..+.+.-+..-|.||.+++.+-
T Consensus 173 ~l~~aa~~a~~lGL~VnAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~A 221 (239)
T PF03740_consen 173 RLRDAARYAHELGLGVNAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARA 221 (239)
T ss_dssp HHHHHHHHHHHTT-EEEEETT---TTTHHHHHTSTTEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHcCCEEecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHH
Confidence 2222 223457878888888 467777777767899999999988654
No 435
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.87 E-value=0.21 Score=43.46 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=64.7
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCC---CcEEEecCCCCHHHHHHHHHhcCccE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEG 163 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~---ipVi~nGgI~s~~da~~~l~~~gad~ 163 (287)
.+.+++..+++.+.+.|+..+-|+-|+. ..++.|+++++..+ --+++.|-|.|+++++++++ .|++.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~---------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~-aGA~F 91 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNP---------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL-AGAQF 91 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCc---------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH-cCCCE
Confidence 4678899999999999999999987653 33578888887653 13799999999999999998 59999
Q ss_pred EEEehhhhhCccchhchh
Q 023070 164 VLSAESLLENPALFAGFR 181 (287)
Q Consensus 164 VmiGR~~l~nP~lf~~~~ 181 (287)
++. =-.||.+.+..+
T Consensus 92 ivs---P~~~~~v~~~~~ 106 (213)
T PRK06552 92 IVS---PSFNRETAKICN 106 (213)
T ss_pred EEC---CCCCHHHHHHHH
Confidence 982 345777666443
No 436
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=94.83 E-value=0.036 Score=46.75 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.....-.+.+++...|++-+-+.. --..++++++.+++|||+.|=|++.+|+.++|+ .||++|.-+..
T Consensus 104 ~al~~~~~~i~~~~PD~vEilPg~-----------~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~-aGa~aVSTS~~ 171 (175)
T PF04309_consen 104 SALETGIKQIEQSKPDAVEILPGV-----------MPKVIKKIREETNIPIIAGGLIRTKEDVEEALK-AGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESCC-----------HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCC-TTCEEEEE--H
T ss_pred HHHHHHHHHHhhcCCCEEEEchHH-----------HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHH-cCCEEEEcCCh
Confidence 333444667778899999886431 125677888888999999999999999999999 59999988754
Q ss_pred h
Q 023070 170 L 170 (287)
Q Consensus 170 ~ 170 (287)
-
T Consensus 172 ~ 172 (175)
T PF04309_consen 172 E 172 (175)
T ss_dssp H
T ss_pred H
Confidence 3
No 437
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.81 E-value=0.16 Score=46.45 Aligned_cols=87 Identities=14% Similarity=0.254 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
+.+...++++.+.+.|++.|.+.|.|.+.... +..-..+.++.+.+.+ ++||++.=+-.+.+++.+.. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~L-s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGSL-TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccC-CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 45567788899999999999999887764321 1112234455555544 58998766656666665443 346999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999999887774
No 438
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.73 E-value=0.59 Score=43.70 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=57.4
Q ss_pred HHHHHHHHhhc-cCCcEEEEecCC------CChhhHHHHHHHHHHcCCCEEEEe--cc-CCCCcCCCCccccHHHHHHHH
Q 023070 64 VKSLVEKLALN-LNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVH--GR-TRDEKDGKKFRADWNAIKAVK 133 (287)
Q Consensus 64 ~~~iv~~v~~~-~~~pv~vKiR~g------~~~~~~~~~a~~l~~~G~~~I~vh--~r-t~~~~~~~~~~~~~~~i~~i~ 133 (287)
+...++.+++. .++||.+-+.-. ...++..+.++.+.+ ++|+|.+- .- +........+..-.+.++.++
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr 202 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALK 202 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHH
Confidence 34444444433 578888887431 123455555555544 49999773 11 111111100011235677788
Q ss_pred hhCC-----CcEEE--ecCCC--CHHHHHHHHHhcCccEEEEehhh
Q 023070 134 NALR-----IPVLA--NGNVR--HMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 134 ~~~~-----ipVi~--nGgI~--s~~da~~~l~~~gad~VmiGR~~ 170 (287)
+.++ +||++ +-++. +..++.+.+++.|+|+|.+--..
T Consensus 203 ~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 203 EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 7776 89873 44444 24455566666899999775443
No 439
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=94.73 E-value=0.15 Score=49.97 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
+..+.++.+.++|++.|++..-... . ..-++.++.+++.. ++||++ |+|.|.+++..+.+ .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~---~---~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~-aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGH---S---EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIE-AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCc---c---hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHH-cCCCEEEEC
Confidence 4578899999999998877422110 0 12357788888876 899888 99999999999998 699999875
No 440
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=94.71 E-value=0.33 Score=44.01 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh-hCCCcE
Q 023070 63 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPV 140 (287)
Q Consensus 63 ~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipV 140 (287)
-+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|.+|.-+.++ --+.++.+++ ..++.|
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~--------l~~~v~~l~~~~~~~~l 238 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ--------LHHLHERLKFFDHIPTL 238 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHhccCCCEEE
Confidence 3566777777653 355665543 3444566678999999999443221 1133444432 246789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP 174 (287)
.++||| +++.+.++.+ +|+|.+++|-...+.|
T Consensus 239 easGGI-~~~ni~~ya~-~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 239 AAAGGI-NPENIADYIE-AGIDLFITSAPYYAAP 270 (277)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCcceecCc
Confidence 999999 5789988887 7999999986544444
No 441
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.70 E-value=0.36 Score=44.01 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=55.9
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++++++... .+|.|-. +..+-++.+.++|+|.|-+..-+. +.++++.+.+ ++.+
T Consensus 184 ~~av~~~r~~~~~~~kIeVEv-------~tleea~~a~~agaDiImLDnmsp------------e~l~~av~~~~~~~~l 244 (290)
T PRK06559 184 QKAIAQARAYAPFVKMVEVEV-------ESLAAAEEAAAAGADIIMLDNMSL------------EQIEQAITLIAGRSRI 244 (290)
T ss_pred HHHHHHHHHhCCCCCeEEEEC-------CCHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhcCceEE
Confidence 344555554432 3444443 223445566689999998863332 3333333322 5789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.. +|+|.+.+|.-...-|+
T Consensus 245 eaSGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 277 (290)
T PRK06559 245 ECSGNI-DMTTISRFRG-LAIDYVSSGSLTHSAKS 277 (290)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCccccCCcc
Confidence 999999 5788888877 79999999975443343
No 442
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=94.68 E-value=0.91 Score=41.48 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCC--cCCC--CccccH----HHHHHH
Q 023070 62 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDGK--KFRADW----NAIKAV 132 (287)
Q Consensus 62 ~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~--~~~~--~~~~~~----~~i~~i 132 (287)
+...+-+..+.+.. +.|+.+-+--..+.++..+.++.+++.|+++|.+--.-... .... ....+. +.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v 163 (299)
T cd02940 84 EYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHH
Confidence 33333344444443 57887766433477888999999999999999883111111 0000 001222 445666
Q ss_pred HhhCCCcEEEe--cCCCCHHHHHHHHHhcCccEEEEe
Q 023070 133 KNALRIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 133 ~~~~~ipVi~n--GgI~s~~da~~~l~~~gad~VmiG 167 (287)
++.+++||++= -++.+..++.+.+.+.|+|+|.+.
T Consensus 164 ~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 164 REAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred HHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 77778898753 344555566666666899999764
No 443
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=94.66 E-value=0.48 Score=42.02 Aligned_cols=134 Identities=19% Similarity=0.216 Sum_probs=72.6
Q ss_pred HHHHc-CCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC--hhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~--~~~~~~~a~~l~~~ 102 (287)
|++++ .||++|=+-=.+ -...-..|. .+ -..+.+.+.++.|...+++||++.+..|.. ..+..+.++.++++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~---~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~a 97 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDG---GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERA 97 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SS---S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCC---CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHc
Confidence 56554 499998765111 111111121 12 245556788888888889999999999753 66888999999999
Q ss_pred CCCEEEEeccCCCCcCCCCccccH-HH---HHHHHhh---CCCcEEEecCCCC--HHHHHHHHH------hcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDGKKFRADW-NA---IKAVKNA---LRIPVLANGNVRH--MEDVQKCLE------ETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~~~~~~~~-~~---i~~i~~~---~~ipVi~nGgI~s--~~da~~~l~------~~gad~Vmi 166 (287)
|+.+|.+-.. +....... -.+. +. |+.+++. .++-|++=-+... .+...+.++ +.|||+|++
T Consensus 98 G~agi~IEDq-~~~~~~~~-l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi 174 (238)
T PF13714_consen 98 GAAGINIEDQ-RCGHGGKQ-LVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFI 174 (238)
T ss_dssp T-SEEEEESB-STTTSTT--B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCcEEEeecc-ccCCCCCc-eeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999999654 11111111 1121 23 3333332 3455555555432 333333332 359999987
No 444
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=94.64 E-value=0.7 Score=41.51 Aligned_cols=94 Identities=26% Similarity=0.315 Sum_probs=62.2
Q ss_pred CHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE-------EEecC----
Q 023070 19 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-------CKIRV---- 85 (287)
Q Consensus 19 ~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~-------vKiR~---- 85 (287)
++++..+.| ++++ .|+++|.|-- + ..+.+.++.+.+ .++||. ...|.
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEg-------------g------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy 149 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEG-------------G------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY 149 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcC-------------c------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence 476666655 4566 6899999862 1 223455555543 367877 32222
Q ss_pred ---CCCh---hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec
Q 023070 86 ---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 144 (287)
Q Consensus 86 ---g~~~---~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG 144 (287)
|.+. +.+++-++.++++|++.|.+-+. + -+..+++.+.+++|+|+-|
T Consensus 150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v----------p--~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECV----------P--VELAAKITEALAIPVIGIG 202 (263)
T ss_pred eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------c--HHHHHHHHHhCCCCEEeec
Confidence 2232 25677788899999999988543 2 2678899999999999766
No 445
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.63 E-value=0.16 Score=45.36 Aligned_cols=91 Identities=7% Similarity=0.017 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEE---eccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEE
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 164 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~v---h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~V 164 (287)
+.+...+.|+.+.++|+..+-= .+||......+.|..-+..+.++++..++|++. .+.+++++..+.+ .+|.+
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vdil 102 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLDVI 102 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCCEE
Confidence 5567789999999999987733 356654333333334567788888889999988 7999999987766 59999
Q ss_pred EEehhhhhCccchhchhh
Q 023070 165 LSAESLLENPALFAGFRT 182 (287)
Q Consensus 165 miGR~~l~nP~lf~~~~~ 182 (287)
.||...+.|..|...+..
T Consensus 103 qIgs~~~~n~~LL~~va~ 120 (250)
T PRK13397 103 QVGARNMQNFEFLKTLSH 120 (250)
T ss_pred EECcccccCHHHHHHHHc
Confidence 999999999999887653
No 446
>PLN02363 phosphoribosylanthranilate isomerase
Probab=94.62 E-value=1.6 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=36.7
Q ss_pred cccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 123 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 123 ~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
..||..+....-....|++..||| +++.+.+++...+..||=+.+|.=..|.
T Consensus 185 t~DW~~l~~~~~~~~~p~iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG 236 (256)
T PLN02363 185 GFNWQNFKLPSVRSRNGWLLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDG 236 (256)
T ss_pred ccCHHHhcccccccCCCEEEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCC
Confidence 357876541110124689999999 5799999988778888888877755554
No 447
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=94.60 E-value=0.14 Score=44.39 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhh-ccCCcEEEEecCCCChhhHHHHHHHHHHcC
Q 023070 25 NAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQDTIKYAKMLEDAG 103 (287)
Q Consensus 25 ~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G 103 (287)
+|-+.+++|+|.||||.++-.+.. -........+.+..+++.+++ ..++||++...- .+.++...++|
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p~~----~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-------~~v~~~aL~~g 92 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRPGA----TPVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-------PEVAEAALKAG 92 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSSTTS----SSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-------HHHHHHHHHHT
T ss_pred HHHHHHHhcCCEEEecccccCCCC----CcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-------HHHHHHHHHcC
Confidence 344477899999999987643321 111223456678888888876 568999998532 23344444447
Q ss_pred CCEE
Q 023070 104 CSLL 107 (287)
Q Consensus 104 ~~~I 107 (287)
++.|
T Consensus 93 ~~~i 96 (210)
T PF00809_consen 93 ADII 96 (210)
T ss_dssp SSEE
T ss_pred cceE
Confidence 7755
No 448
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.59 E-value=1.4 Score=41.72 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHH-HHcCCCCEEEEe--ccCChhhhhcCcccccccCChHHHHHHHHHHhhccC--
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAAR-RVEPYCDYVDIN--LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLN-- 76 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~-~~~~g~d~IdiN--~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-- 76 (287)
-.++|++.-++ |-|++.+++.+. .+..|+|+|-.. +|-+. -..+.++.+.+.+.++.+.+.++
T Consensus 127 v~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~--------~~~~eER~~~v~~av~~a~~~TG~~ 198 (367)
T cd08205 127 VHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQP--------YAPFEERVRACMEAVRRANEETGRK 198 (367)
T ss_pred CCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcc--------cCCHHHHHHHHHHHHHHHHHhhCCc
Confidence 35788887765 457999999888 456689998553 22111 01123455666677777665554
Q ss_pred CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEe----cC-------
Q 023070 77 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN----GN------- 145 (287)
Q Consensus 77 ~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~n----Gg------- 145 (287)
.++..-+ ..+.++.++.++.++++|++++-|..-.. -+..+..+++..++||.+- |-
T Consensus 199 ~~y~~ni--t~~~~e~i~~a~~a~~~Gad~vmv~~~~~----------g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~~ 266 (367)
T cd08205 199 TLYAPNI--TGDPDELRRRADRAVEAGANALLINPNLV----------GLDALRALAEDPDLPIMAHPAFAGALSRSPDY 266 (367)
T ss_pred ceEEEEc--CCCHHHHHHHHHHHHHcCCCEEEEecccc----------cccHHHHHHhcCCCeEEEccCcccccccCCCC
Confidence 3333333 23348889999999999999997763321 1122344444456666531 11
Q ss_pred CCCHHHHHHHHHhcCccEEEEe
Q 023070 146 VRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 146 I~s~~da~~~l~~~gad~VmiG 167 (287)
+.+.--..++.+..|+|.+..+
T Consensus 267 g~~~~~~~kl~RlaGad~~~~~ 288 (367)
T cd08205 267 GSHFLLLGKLMRLAGADAVIFP 288 (367)
T ss_pred cCCHHHHHHHHHHcCCCccccC
Confidence 3344455566666788888765
No 449
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=94.57 E-value=0.66 Score=40.21 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=28.2
Q ss_pred HHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEecc
Q 023070 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 112 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~r 112 (287)
++++.+++.. .++.+.+.++.-.......++.+.+.|+|++|||+.
T Consensus 40 ~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 40 KIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5666666543 345444434332233345566678899999999963
No 450
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=94.55 E-value=0.39 Score=43.08 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=50.9
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAK 97 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~ 97 (287)
+.+...+-|. .+++|+|.||||+-+..+... +-.-....+.+..+++.+++.+++||++...- .+.++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~-------~~v~e 90 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTFR-------AEVAR 90 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-------HHHHH
Confidence 5555555554 678899999999643322110 11112345567778888888778999987321 24456
Q ss_pred HHHHcCCCEE-EEec
Q 023070 98 MLEDAGCSLL-AVHG 111 (287)
Q Consensus 98 ~l~~~G~~~I-~vh~ 111 (287)
...+.|++.| .|.+
T Consensus 91 ~al~~G~~iINdisg 105 (257)
T cd00739 91 AALEAGADIINDVSG 105 (257)
T ss_pred HHHHhCCCEEEeCCC
Confidence 6666788877 3443
No 451
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=94.45 E-value=0.52 Score=43.09 Aligned_cols=150 Identities=9% Similarity=0.087 Sum_probs=82.8
Q ss_pred HHHHc-CCCCEEEEe-ccCChh-hhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHc
Q 023070 27 ARRVE-PYCDYVDIN-LGCPQR-IARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDA 102 (287)
Q Consensus 27 A~~~~-~g~d~IdiN-~gcP~~-~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~ 102 (287)
|++++ .||+++=+- .+.-.. .-..|. | +-..+...+.++.|...+++||++.+-.|.. ..+....++.++++
T Consensus 29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~-g---~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~a 104 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGTSASMLGLPDL-G---FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERV 104 (294)
T ss_pred HHHHHHcCCCEEEecHHHHHHHHcCCCCc-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHc
Confidence 55554 599998663 111111 111121 1 2234556777788888889999999988753 34567789999999
Q ss_pred CCCEEEEeccCCCCcCC-CCcc--cc-HHHHHHH---HhhC-CCcEEEec--CC---CCHHHHHHHH---HhcCccEEEE
Q 023070 103 GCSLLAVHGRTRDEKDG-KKFR--AD-WNAIKAV---KNAL-RIPVLANG--NV---RHMEDVQKCL---EETGCEGVLS 166 (287)
Q Consensus 103 G~~~I~vh~rt~~~~~~-~~~~--~~-~~~i~~i---~~~~-~ipVi~nG--gI---~s~~da~~~l---~~~gad~Vmi 166 (287)
|+.+|++-.-+...+-+ ..+. .+ -+.+.+| ++.. +.+++.|. +. ...+++.+-. .+.|||+|++
T Consensus 105 Gaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi 184 (294)
T TIGR02319 105 GIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFL 184 (294)
T ss_pred CCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999996443210000 0011 11 1333443 3332 23344443 22 2244443222 2369999999
Q ss_pred ehhhhhCccchhchhh
Q 023070 167 AESLLENPALFAGFRT 182 (287)
Q Consensus 167 GR~~l~nP~lf~~~~~ 182 (287)
- .+.++...+++..
T Consensus 185 ~--~~~~~~ei~~~~~ 198 (294)
T TIGR02319 185 E--AMLDVEEMKRVRD 198 (294)
T ss_pred c--CCCCHHHHHHHHH
Confidence 4 3567776665543
No 452
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.45 E-value=1.5 Score=38.04 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=75.8
Q ss_pred EEEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChh
Q 023070 12 FVQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ 90 (287)
Q Consensus 12 ~~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~ 90 (287)
.++|||- ++++...|+ +.|+|.|=+.|-.+.+. .=+++.+.+|.+.+...+ .+|.|=. ..
T Consensus 4 ~vKICGi~~~eda~~~~---~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~-----~~ 64 (210)
T PRK01222 4 RVKICGITTPEDAEAAA---ELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFV-----NA 64 (210)
T ss_pred eEEECCCCcHHHHHHHH---HcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEe-----CC
Confidence 4899995 566544433 46888888875422211 124667777777654222 2333331 13
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHh-cCccEEEEeh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 168 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~-~gad~VmiGR 168 (287)
+..++.+.+++.+.+.|.+||- .+.+.++.+++..+++|+-.=.+.+..++....+. ..||.+++-.
T Consensus 65 ~~~~i~~~~~~~~~d~vQLHg~-----------e~~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds 132 (210)
T PRK01222 65 SDEEIDEIVETVPLDLLQLHGD-----------ETPEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDA 132 (210)
T ss_pred CHHHHHHHHHhcCCCEEEECCC-----------CCHHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcC
Confidence 4445666777999999999963 22356777777667777755556555555443332 2578877753
No 453
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.45 E-value=0.52 Score=42.80 Aligned_cols=86 Identities=9% Similarity=0.152 Sum_probs=54.1
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++++++... .+|.|-++ + .+-+..+.++|+|.|-+..-+. +.++++.+.. ..|+
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~------------e~l~~av~~~~~~~~l 241 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP------------DTLREAVAIVAGRAIT 241 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH------------HHHHHHHHHhCCCceE
Confidence 344555555442 44554432 2 2334455689999998763322 3344433332 5789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
.++||| +++.+.++-+ +|+|.+.+|.-..
T Consensus 242 eaSGGI-~~~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 242 EASGRI-TPETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeChhhc
Confidence 999999 5788888877 7999999997444
No 454
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.44 E-value=0.21 Score=45.82 Aligned_cols=88 Identities=22% Similarity=0.331 Sum_probs=61.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH---HHhcCc
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGC 161 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~---l~~~ga 161 (287)
.|.+...++++.+.+.|+++|.+-|-|.+.... +..-..+.++.+++.+ ++|||+.-|=.+.+++.+. .+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~L-s~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTL-TLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhc-CHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 355677889999999999999998887764321 1112234556666665 5898875554445555433 344799
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|++|+-...|..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999999998887
No 455
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=94.41 E-value=0.17 Score=46.00 Aligned_cols=42 Identities=29% Similarity=0.656 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEEe
Q 023070 124 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 167 (287)
Q Consensus 124 ~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~VmiG 167 (287)
.+|+-++.+++.++.||+.-| |-+.+|+..+.+ .|++|+++.
T Consensus 210 l~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave-~G~~GIIVS 251 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVVKG-VLTGEDARKAVE-AGVAGIIVS 251 (363)
T ss_pred CChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHH-hCCceEEEe
Confidence 479999999999999999865 778899999999 599999884
No 456
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=94.40 E-value=2.9 Score=37.30 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=85.1
Q ss_pred CEEEEecCCCHHHHHHHHHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCC
Q 023070 10 PLFVQFCANDPEILLNAARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFP 87 (287)
Q Consensus 10 p~~~Qi~g~~~~~~~~aA~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~ 87 (287)
.+++-|.|.+++++.+.++.+ ..++|.||+=+- -+.. ..+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---------~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~ 85 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---------FLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK 85 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec---------hhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 367999999999998887754 468999999642 2211 124466677777777655 689998888722
Q ss_pred -------ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecC----CCCHHHHHHH
Q 023070 88 -------NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRHMEDVQKC 155 (287)
Q Consensus 88 -------~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGg----I~s~~da~~~ 155 (287)
+.++..++.+.+.+.| +++|.|--... ......+....+..++.||++=- --+.+++.+.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~--------~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~ 157 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG--------KDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVER 157 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC--------hHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHH
Confidence 3345567778888889 89999852211 11122222222234567777642 2233454433
Q ss_pred H---HhcCccEEEEeh
Q 023070 156 L---EETGCEGVLSAE 168 (287)
Q Consensus 156 l---~~~gad~VmiGR 168 (287)
+ ...|||.|=+..
T Consensus 158 ~~~~~~~gaDivKia~ 173 (253)
T PRK02412 158 LRKMESLGADIVKIAV 173 (253)
T ss_pred HHHHHHhCCCEEEEEe
Confidence 3 335777665543
No 457
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.35 E-value=0.63 Score=40.82 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh----CCCcEEEecCCCCHHHHHHHHHhcCc
Q 023070 86 FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVLANGNVRHMEDVQKCLEETGC 161 (287)
Q Consensus 86 g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipVi~nGgI~s~~da~~~l~~~ga 161 (287)
+.+.+++.++++.+.+.|+..|-|+-|+.. ..+.|+.+++. .+--+++.|-|.|+++++.+++ .|+
T Consensus 23 ~~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~-aGA 92 (222)
T PRK07114 23 HADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQ-LGA 92 (222)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHH-cCC
Confidence 356789999999999999999999977642 34566666532 2223799999999999999998 599
Q ss_pred cEEEEehhhhhCccchhchh
Q 023070 162 EGVLSAESLLENPALFAGFR 181 (287)
Q Consensus 162 d~VmiGR~~l~nP~lf~~~~ 181 (287)
+.++.= -.||.+.+..+
T Consensus 93 ~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 93 NFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred CEEECC---CCCHHHHHHHH
Confidence 998752 35888777554
No 458
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=94.35 E-value=0.63 Score=43.03 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=61.5
Q ss_pred cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEe
Q 023070 31 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH 110 (287)
Q Consensus 31 ~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh 110 (287)
+.|+|.|+||+-..-+... ...++.+.++++.|.+.+++|+.+-..... ..++.-+-..++.++=....+.
T Consensus 87 ~~GAd~Idl~~~s~dp~~~--------d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~-~kD~evleaale~~~g~~pLIn 157 (319)
T PRK04452 87 EYGADMITLHLISTDPNGK--------DKSPEEAAKTVEEVLQAVDVPLIIGGSGNP-EKDAEVLEKVAEAAEGERCLLG 157 (319)
T ss_pred HhCCCEEEEECCCCCcccc--------cchHHHHHHHHHHHHHhCCCCEEEecCCCC-CCCHHHHHHHHHHhCCCCCEEE
Confidence 4589999999632211100 123566788999998889999986632211 1133222233333332222333
Q ss_pred ccCCCCcCCCCccccHHHHHHHHhhCCCcEEEec--CCCCHHHHHHHHHhcCc
Q 023070 111 GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGC 161 (287)
Q Consensus 111 ~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nG--gI~s~~da~~~l~~~ga 161 (287)
+-+. .+|+.+..+....+.||++.. +|.-..++...+.+.|.
T Consensus 158 Sat~---------en~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi 201 (319)
T PRK04452 158 SAEE---------DNYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGV 201 (319)
T ss_pred ECCH---------HHHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCC
Confidence 2221 257777777777788888775 33333333344444555
No 459
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=94.34 E-value=0.49 Score=42.75 Aligned_cols=111 Identities=19% Similarity=0.214 Sum_probs=73.2
Q ss_pred cccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCC-CEEEE-eccCCCCcCCCCccccHHHH
Q 023070 52 NYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAV-HGRTRDEKDGKKFRADWNAI 129 (287)
Q Consensus 52 ~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~-~~I~v-h~rt~~~~~~~~~~~~~~~i 129 (287)
.-|+.++.++.++..+ ..++.||.+|-....+.++....++.+...|+ +.+.+ |-..+..........|+..+
T Consensus 112 qIgAr~~~n~~ll~~a-----s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~ 186 (270)
T PF00793_consen 112 QIGARLMENQDLLEAA-----SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAV 186 (270)
T ss_dssp EE-GGGTTCHHHHHHH-----HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHH
T ss_pred EECcchhcCHHHHHHh-----ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHH
Confidence 3466677776654333 25689999998888778888889999999995 66644 32222211111113577778
Q ss_pred HHHHhhCCCcEEEec----CCCC-------HHHHHHHHHhcCccEEEEeh
Q 023070 130 KAVKNALRIPVLANG----NVRH-------MEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 130 ~~i~~~~~ipVi~nG----gI~s-------~~da~~~l~~~gad~VmiGR 168 (287)
..+++..++||+..- +-.+ +..+...+. .|+||+|+=.
T Consensus 187 ~~~~~~~~lpVivD~SH~~~~~~~~~q~~V~~~a~aaia-~GidGlmiEs 235 (270)
T PF00793_consen 187 PIMKKKTHLPVIVDPSHANSRKDGGRQELVPPLARAAIA-AGIDGLMIES 235 (270)
T ss_dssp HHHHHHTSSEEEEEHHHHTTTCGGGGHCGHHHHHHHHHH-HTESEEEEEE
T ss_pred HHHHHhcCCCEEECchhhhccccCCchhhHHHHHHHHHh-hcCCEEEEee
Confidence 888888789999653 2333 556677777 5899999964
No 460
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.23 E-value=1.6 Score=39.34 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=75.4
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCc-EEEEecCC---CChhhHHHHHH-HHH
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVP-VSCKIRVF---PNLQDTIKYAK-MLE 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~p-v~vKiR~g---~~~~~~~~~a~-~l~ 100 (287)
|++++ .|+|.|= .|.......- +|-....-..+.+...+++|++.++.| |++.+..| .+.++.++.+. .++
T Consensus 28 Arl~e~aG~d~i~--vGds~~~~~l-G~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 28 AKLFDEAGVDVIL--VGDSLGMVVL-GYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHHHHHcCCCEEE--ECHHHHHHHc-CCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 55554 5999995 3544443332 233444456777788888888888775 88887533 23345455444 455
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
++|+++|.+-+. ....+.|+.+++ .+|||+ ..||. ++.+.+.+++ ++.
T Consensus 105 ~aGa~aVkiEdg----------~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eA 173 (264)
T PRK00311 105 EAGAHAVKLEGG----------EEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEA 173 (264)
T ss_pred HhCCeEEEEcCc----------HHHHHHHHHHHH-CCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHC
Confidence 599999998653 112245666654 389987 44543 3434343333 346
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
|||++.+
T Consensus 174 GA~~i~l 180 (264)
T PRK00311 174 GAFALVL 180 (264)
T ss_pred CCCEEEE
Confidence 9999877
No 461
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=94.23 E-value=0.23 Score=43.09 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=55.0
Q ss_pred HHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhC
Q 023070 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173 (287)
Q Consensus 96 a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~n 173 (287)
.+++.+.|+..|-|..|.-.. ...|+....++.+.+ ++-+++-.||+|++|+...-+ .|+.+|.+|..++..
T Consensus 199 m~raleiGakvvGvNNRnL~s-----FeVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~-~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 199 MQRALEIGAKVVGVNNRNLHS-----FEVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK-AGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHhCcEEEeecCCccce-----eeechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH-cCceEEEecHHHHhc
Confidence 444555688888887776542 257788778887765 456777789999999998877 599999999999853
No 462
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.17 E-value=0.27 Score=44.73 Aligned_cols=85 Identities=19% Similarity=0.184 Sum_probs=58.2
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|++.|.+-|-|.+..... .....+.++.+.+.+ ++|||++-+- +.+++.+.. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls-~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLT-PDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCC-HHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455667788999999999999988877643221 111224455555554 5999987665 666665544 447999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
++|+--+.+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999988887665
No 463
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.16 E-value=0.46 Score=40.44 Aligned_cols=72 Identities=15% Similarity=0.351 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 87 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 87 ~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
.+.+++.++++.+.+.|++.|.+.-++. ...+.++.+++....-.++.|-+.+.+++..+++ .|||+|++
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~-~gAdgv~~ 90 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSD---------QPAELISQLREKLPECIIGTGTILTLEDLEEAIA-AGAQFCFT 90 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCC---------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH-cCCCEEEC
Confidence 4668889999999999999999975543 2236667776655555578889999999999998 59999988
Q ss_pred eh
Q 023070 167 AE 168 (287)
Q Consensus 167 GR 168 (287)
+-
T Consensus 91 p~ 92 (187)
T PRK07455 91 PH 92 (187)
T ss_pred CC
Confidence 74
No 464
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=94.13 E-value=1.1 Score=40.23 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=64.7
Q ss_pred CHHHHHHHH-HHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecC-----------
Q 023070 19 DPEILLNAA-RRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRV----------- 85 (287)
Q Consensus 19 ~~~~~~~aA-~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~----------- 85 (287)
++++..+.| ++++ .|+|+|-|- |+. ...++++++.+. ++||.--+.+
T Consensus 92 s~e~av~nA~rl~ke~GadaVKlE-------------Gg~------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGy 151 (261)
T PF02548_consen 92 SPEQAVRNAGRLMKEAGADAVKLE-------------GGA------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGY 151 (261)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEE-------------BSG------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS
T ss_pred CHHHHHHHHHHHHHhcCCCEEEec-------------cch------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCc
Confidence 555555544 5666 689999986 221 234455555433 8999877754
Q ss_pred ---CCChh---hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhc
Q 023070 86 ---FPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEET 159 (287)
Q Consensus 86 ---g~~~~---~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~ 159 (287)
|-+.+ ..++.|+.++++|+-.|.+-.. + -+.-+.+.+.++||+|+-|.= .
T Consensus 152 r~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~v----------p--~~la~~It~~l~IPtIGIGaG------------~ 207 (261)
T PF02548_consen 152 RVQGKTAEEAEKLLEDAKALEEAGAFAIVLECV----------P--AELAKAITEALSIPTIGIGAG------------P 207 (261)
T ss_dssp --CSTSHHHHHHHHHHHHHHHHHT-SEEEEESB----------B--HHHHHHHHHHSSS-EEEESS-------------S
T ss_pred eEEecCHHHHHHHHHHHHHHHHcCccEEeeecC----------H--HHHHHHHHHhCCCCEEecCCC------------C
Confidence 22323 4467788999999999988643 2 256678899999999977642 3
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
+|||-++
T Consensus 208 ~cDGQvL 214 (261)
T PF02548_consen 208 GCDGQVL 214 (261)
T ss_dssp TSSEEEE
T ss_pred CCCceEE
Confidence 6898654
No 465
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=94.12 E-value=1.9 Score=37.32 Aligned_cols=116 Identities=20% Similarity=0.223 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE--EEecCCC---Chhh
Q 023070 18 NDPEILLNAARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS--CKIRVFP---NLQD 91 (287)
Q Consensus 18 ~~~~~~~~aA~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~--vKiR~g~---~~~~ 91 (287)
.+++.+...|+.++ .|+-+|.+| | .+=+++++..+++||. +|-..-. ...-
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-------------g----------v~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp 86 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-------------G----------VEDIKAIRAVVDVPIIGIIKRDYPDSPVRITP 86 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-------------c----------hhhHHHHHhhCCCCeEEEEecCCCCCCceecc
Confidence 46678888887654 578999998 1 2335678888999986 5532211 1123
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH-HHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 165 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~-~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vm 165 (287)
+++-++.|.++|++.|.+.+..+.. .. . +++ .+++ .+..+ ..+--|+.|+++...+.+ .|+|.|.
T Consensus 87 tlkeVd~L~~~Ga~IIA~DaT~R~R---P~-~-~~~~~i~~-~k~~~--~l~MAD~St~ee~l~a~~-~G~D~IG 152 (229)
T COG3010 87 TLKEVDALAEAGADIIAFDATDRPR---PD-G-DLEELIAR-IKYPG--QLAMADCSTFEEGLNAHK-LGFDIIG 152 (229)
T ss_pred cHHHHHHHHHCCCcEEEeecccCCC---Cc-c-hHHHHHHH-hhcCC--cEEEeccCCHHHHHHHHH-cCCcEEe
Confidence 4566778889999999887655431 11 1 332 3333 22333 566679999999999998 5999863
No 466
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.03 E-value=1.2 Score=41.18 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=81.7
Q ss_pred HHHHc-CCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEE-EecCC---CChhhHHHHHHHH-H
Q 023070 27 ARRVE-PYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSC-KIRVF---PNLQDTIKYAKML-E 100 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~v-KiR~g---~~~~~~~~~a~~l-~ 100 (287)
|++++ .|+|.|=+ |....++.-| |-+.+--..+.+...+++|++....|++| .+-.+ .+.+++++-+.++ .
T Consensus 48 A~i~d~aGvD~ILV--GDSlgmv~lG-~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~ 124 (332)
T PLN02424 48 AVHVDSAGIDVCLV--GDSAAMVVHG-HDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLK 124 (332)
T ss_pred HHHHHHcCCCEEEE--CCcHHHHhcC-CCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHH
Confidence 44443 47777655 3333333322 44445556777888888999888889887 77766 3567788878877 6
Q ss_pred HcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE-----------EecCC----CCHHHHHHHH------Hhc
Q 023070 101 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-----------ANGNV----RHMEDVQKCL------EET 159 (287)
Q Consensus 101 ~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi-----------~nGgI----~s~~da~~~l------~~~ 159 (287)
+.|+++|-+-|... ...+.|+.+. ..+|||+ .-||. ++.+.+.+++ ++.
T Consensus 125 eaGa~aVKlEGg~~---------~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~A 194 (332)
T PLN02424 125 EGGMDAVKLEGGSP---------SRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEA 194 (332)
T ss_pred HhCCcEEEECCCcH---------HHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHc
Confidence 79999998875531 1236677777 4589999 33552 3444443333 446
Q ss_pred CccEEEE
Q 023070 160 GCEGVLS 166 (287)
Q Consensus 160 gad~Vmi 166 (287)
||+++.+
T Consensus 195 GAf~ivL 201 (332)
T PLN02424 195 GCFAVVL 201 (332)
T ss_pred CCcEEEE
Confidence 9998875
No 467
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.03 E-value=0.86 Score=41.38 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHHHHhhccC--CcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcE
Q 023070 65 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPV 140 (287)
Q Consensus 65 ~~iv~~v~~~~~--~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipV 140 (287)
.+.++.+++... .+|.|-++ ..+-++.+.++|+|.|-+..-+. +.++++.+.+ ...+
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~-------slee~~ea~~~gaDiImLDn~s~------------e~l~~av~~~~~~~~l 240 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVD-------RLDQIEPVLAAGVDTIMLDNFSL------------DDLREGVELVDGRAIV 240 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHhcCCCEEEECCCCH------------HHHHHHHHHhCCCeEE
Confidence 344445554432 44555432 23334555689999998863322 2333333322 3578
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
.++||| +++.+.++.. +|+|.+.+|.-...=|+
T Consensus 241 eaSGgI-~~~ni~~yA~-tGVD~Is~galths~~~ 273 (281)
T PRK06543 241 EASGNV-NLNTVGAIAS-TGVDVISVGALTHSVRA 273 (281)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCccccCCcc
Confidence 999999 5788888877 79999999975544444
No 468
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.00 E-value=0.66 Score=42.35 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=57.6
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+..-+. +.+++..+.+ ++.+.
T Consensus 193 ~~av~~~r~~~~~~kIeVEve-------tleea~eA~~aGaDiImLDnmsp------------e~l~~av~~~~~~~~lE 253 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIEVE-------TLAQLETALAHGAQSVLLDNFTL------------DMMREAVRVTAGRAVLE 253 (294)
T ss_pred HHHHHHHHHhCCCCcEEEEcC-------CHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHhhcCCeEEE
Confidence 35555555432 234444432 24445556689999998864432 2333333322 57799
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
++||| +++.+.++-+ +|+|.+.+|.-...-||+
T Consensus 254 aSGGI-t~~ni~~yA~-tGVD~IS~galthsa~~l 286 (294)
T PRK06978 254 VSGGV-NFDTVRAFAE-TGVDRISIGALTKDVRAT 286 (294)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCccc
Confidence 99999 5788888877 799999999766555553
No 469
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=93.94 E-value=1 Score=41.15 Aligned_cols=151 Identities=13% Similarity=0.065 Sum_probs=84.5
Q ss_pred HHHHc-CCCCEEEEeccC-ChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCC-hhhHHHHHHHHHHcC
Q 023070 27 ARRVE-PYCDYVDINLGC-PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAG 103 (287)
Q Consensus 27 A~~~~-~g~d~IdiN~gc-P~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~-~~~~~~~a~~l~~~G 103 (287)
|++++ .||++|-+-=.+ -...-..| | .+ -..+.+.+.++.|...+++||++.+-.|.. ..+..+.++.++++|
T Consensus 28 Ari~e~aGf~ai~~ss~~va~slG~pD--~-g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aG 103 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFELSASYAVPD--A-NI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAG 103 (290)
T ss_pred HHHHHHcCCCEEEECHHHHHHHCCCCC--c-cc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcC
Confidence 55554 499988775110 00000112 1 12 245667788888888899999999988753 235677799999999
Q ss_pred CCEEEEeccCCCCcCCC--Cc---cccH-HHHHHH---Hhh-CCCcEEEecCCC------CHHHHHHH---HHhcCccEE
Q 023070 104 CSLLAVHGRTRDEKDGK--KF---RADW-NAIKAV---KNA-LRIPVLANGNVR------HMEDVQKC---LEETGCEGV 164 (287)
Q Consensus 104 ~~~I~vh~rt~~~~~~~--~~---~~~~-~~i~~i---~~~-~~ipVi~nGgI~------s~~da~~~---l~~~gad~V 164 (287)
+.+|.+-......+.+. .+ -.+. +.+.+| ++. .+.+++.|.... ..+++.+- ..+.|||+|
T Consensus 104 vagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~i 183 (290)
T TIGR02321 104 ASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAI 183 (290)
T ss_pred CeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEE
Confidence 99999954332111000 01 1122 233343 332 233444444322 23444322 223699999
Q ss_pred EEehhhhhCccchhchhh
Q 023070 165 LSAESLLENPALFAGFRT 182 (287)
Q Consensus 165 miGR~~l~nP~lf~~~~~ 182 (287)
++- +.+.+|..+.++..
T Consensus 184 fv~-~~~~~~~ei~~~~~ 200 (290)
T TIGR02321 184 LIH-SRQKTPDEILAFVK 200 (290)
T ss_pred Eec-CCCCCHHHHHHHHH
Confidence 993 34567776666543
No 470
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.91 E-value=0.75 Score=41.96 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccH-HHHHHHHh-hCCCcEEE
Q 023070 66 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKN-ALRIPVLA 142 (287)
Q Consensus 66 ~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~-~~i~~i~~-~~~ipVi~ 142 (287)
+.++.+++.. ..++.|=++ + .+-+..+.++|+|.|-+..-+.+ ++ +.+..+++ ..++.+.+
T Consensus 188 ~ai~~~r~~~~~~kIeVEv~---t----l~ea~eal~~gaDiI~LDnm~~e---------~vk~av~~~~~~~~~v~iea 251 (289)
T PRK07896 188 AALRAVRAAAPDLPCEVEVD---S----LEQLDEVLAEGAELVLLDNFPVW---------QTQEAVQRRDARAPTVLLES 251 (289)
T ss_pred HHHHHHHHhCCCCCEEEEcC---C----HHHHHHHHHcCCCEEEeCCCCHH---------HHHHHHHHHhccCCCEEEEE
Confidence 4445555433 345555542 2 23344456899999988633211 11 11222222 23578999
Q ss_pred ecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 143 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 143 nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 252 SGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 252 SGGL-TLDTAAAYAE-TGVDYLAVGALTHSVPV 282 (289)
T ss_pred ECCC-CHHHHHHHHh-cCCCEEEeChhhcCCCc
Confidence 9999 5788888777 79999999975553444
No 471
>PLN02417 dihydrodipicolinate synthase
Probab=93.89 E-value=0.33 Score=43.96 Aligned_cols=87 Identities=16% Similarity=0.179 Sum_probs=57.8
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+.|.+.+.... +..-..+.++.+.+.+ ++||++.=|=.+.+++.+.. +..|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~l-s~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLM-SWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhC-CHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 55566788899999999999998887664321 1111223444445543 48988665544556665543 347999
Q ss_pred EEEEehhhhhCcc
Q 023070 163 GVLSAESLLENPA 175 (287)
Q Consensus 163 ~VmiGR~~l~nP~ 175 (287)
+||+.-+.+..|.
T Consensus 99 av~~~~P~y~~~~ 111 (280)
T PLN02417 99 AALHINPYYGKTS 111 (280)
T ss_pred EEEEcCCccCCCC
Confidence 9999988777763
No 472
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=93.89 E-value=0.31 Score=44.65 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+....+++.+.+.|+++|.+-|-+.+..... ..-..+.++.+.+.+ ++|||+.-|- +.+++.+.. +..|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt-~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLT-PDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCC-HHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 555677889999999999999988776643221 111234455555554 5999876554 566665444 446999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+.-+.+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999988776655
No 473
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=93.84 E-value=2.5 Score=40.51 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=93.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|...+.+.+++..+.
T Consensus 141 v~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 208 (412)
T TIGR03326 141 IKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRF------------EERVEKLYKVRDKVEAE 208 (412)
T ss_pred CCCCceEEeeccccccCChHHHHHHHHHHHhcCCceeecCCCCCCCCCccH------------HHHHHHHHHHHHHHHHH
Confidence 45789987764 67899999999854 456777643 23 3444 24455566666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh---hCCCcEEE---------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---ALRIPVLA--------- 142 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~~ipVi~--------- 142 (287)
++.....=.++.-+.++..+-++.+.+.|+..+-|..-+ .-|..+..+++ ..++||.+
T Consensus 209 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 209 TGERKEYLANITAPVREMERRAELVADLGGQYVMVDVVV----------CGWSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred hCCcceEEEEecCCHHHHHHHHHHHHHhCCCeEEEEeec----------cchHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 665554444444456777888888899999988775332 22455666655 45788876
Q ss_pred ---ecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 143 ---NGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 143 ---nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+-||.. .-..++..-.|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 235654 44667777789999998865
No 474
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=93.75 E-value=0.35 Score=40.40 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
...-.+.+++.++|+|-|-++- --..++++.+.+++|||+.|=|++-|++.++++ .||-+|.-
T Consensus 110 l~~~~~~i~~~~pD~iEvLPGv-----------~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~-aGA~avST 172 (181)
T COG1954 110 LEKGIKQIEKSEPDFIEVLPGV-----------MPKVIKEITEKTHIPIIAGGLIETEEEVREALK-AGAVAVST 172 (181)
T ss_pred HHHHHHHHHHcCCCEEEEcCcc-----------cHHHHHHHHHhcCCCEEeccccccHHHHHHHHH-hCcEEEee
Confidence 3344556678899999886441 126789999999999999999999999999999 48877763
No 475
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=93.71 E-value=1.2 Score=40.51 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEe-ccCChhhhhcCcccccc--cCChHHHHHHHHHHhhccC--CcEEEEecCCC----
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDIN-LGCPQRIARRGNYGAFL--MDNLPLVKSLVEKLALNLN--VPVSCKIRVFP---- 87 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN-~gcP~~~~~~~~~G~~l--~~~~~~~~~iv~~v~~~~~--~pv~vKiR~g~---- 87 (287)
..||.+.+.=+ .+++|+|.|+-| |||-.-+..+ ||-.- ..=-....+|-+++.+..+ .|..|-=.+|+
T Consensus 50 T~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lad--y~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~ 127 (311)
T COG0646 50 TKPDVIEAIHRAYIEAGADIIETNTFGATTIKLAD--YGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKT 127 (311)
T ss_pred CCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhh--hChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEeccCcCCc
Confidence 56788777776 688999999999 6765533332 33110 0001122344444433322 34444322221
Q ss_pred ---------ChhhH----HHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh--CCCcEEEecCC------
Q 023070 88 ---------NLQDT----IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNV------ 146 (287)
Q Consensus 88 ---------~~~~~----~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipVi~nGgI------ 146 (287)
++++. .+-++.+.+-|+|.|.+-.-.- . ....+-+..++++.+. .++||+++|-|
T Consensus 128 ~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D--~--l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~t 203 (311)
T COG0646 128 LSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD--T--LNAKAAVFAAREVFEELGVRLPVMISGTITDSGRT 203 (311)
T ss_pred CCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc--H--HHHHHHHHHHHHHHHhcCCcccEEEEEEEecCcee
Confidence 12222 3556678899999997742210 0 0001223334444433 35999999966
Q ss_pred ---CCHHHHHHHHHhcCccEEEE
Q 023070 147 ---RHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 147 ---~s~~da~~~l~~~gad~Vmi 166 (287)
.+++++...++..|+|.|.+
T Consensus 204 l~Gq~~~a~~~~l~~~~~~~vGl 226 (311)
T COG0646 204 LSGQTIEAFLNSLEHLGPDAVGL 226 (311)
T ss_pred cCCCcHHHHHHHhhccCCcEEee
Confidence 35667777777666665544
No 476
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.70 E-value=0.71 Score=42.22 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=55.8
Q ss_pred HHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEE
Q 023070 65 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 141 (287)
Q Consensus 65 ~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi 141 (287)
.+.++++++.. ..+|.|-++ +.+-++.+.++|+|.|-+..-+. +.++++.+.. ++.+.
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~------------e~~~~av~~~~~~~~ie 256 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT------------EQMREAVKRTNGRALLE 256 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh------------HHHHHHHHhhcCCeEEE
Confidence 34444544433 355665543 23445556689999998753322 3333333322 57899
Q ss_pred EecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 142 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 142 ~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
++||| +++.+.++-+ +|+|.+.+|.-.-.-||
T Consensus 257 aSGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 288 (296)
T PRK09016 257 VSGNV-TLETLREFAE-TGVDFISVGALTKHVQA 288 (296)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCCc
Confidence 99999 5788887776 79999999964443333
No 477
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.68 E-value=2.2 Score=38.34 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=73.1
Q ss_pred HHHH-cCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEE-EEecCC-C-ChhhHHHHHHHHHH-
Q 023070 27 ARRV-EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVS-CKIRVF-P-NLQDTIKYAKMLED- 101 (287)
Q Consensus 27 A~~~-~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~-vKiR~g-~-~~~~~~~~a~~l~~- 101 (287)
|+++ +.|+|.|=+ |.......- ||-+.+--..+.+...+++|++....|+. +.+..+ . +.++.++-+.++.+
T Consensus 28 A~i~~~aG~d~ilv--GdSlgm~~l-G~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~e 104 (263)
T TIGR00222 28 AKLFADAGVDVILV--GDSLGMVVL-GHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQE 104 (263)
T ss_pred HHHHHHcCCCEEEE--CccHhHHhc-CCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHH
Confidence 5555 458998874 433333332 24444445677777888888877433322 233222 1 35666666666554
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE---------Ee--cCC----CCHHHHHHHH------HhcC
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL---------AN--GNV----RHMEDVQKCL------EETG 160 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi---------~n--GgI----~s~~da~~~l------~~~g 160 (287)
+|++++.+-|. ....+.++.+.+ .++||+ ++ ||. ++.+.+.+++ ++.|
T Consensus 105 aGa~aVkiEgg----------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AG 173 (263)
T TIGR00222 105 TGANAVKLEGG----------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAG 173 (263)
T ss_pred hCCeEEEEcCc----------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcC
Confidence 99999998764 112245555543 478888 33 655 3555554444 3469
Q ss_pred ccEEEE
Q 023070 161 CEGVLS 166 (287)
Q Consensus 161 ad~Vmi 166 (287)
|+++.+
T Consensus 174 A~~ivl 179 (263)
T TIGR00222 174 AQLLVL 179 (263)
T ss_pred CCEEEE
Confidence 999876
No 478
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=93.66 E-value=2.1 Score=48.20 Aligned_cols=106 Identities=10% Similarity=0.182 Sum_probs=71.5
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc--CCcEEEEecCCCChhhHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~pv~vKiR~g~~~~~~~~ 94 (287)
.+|+++.+.++ .++.||..+.+..|-. .+++.-.+.++++++.+ ++.+.+..+-+|+.+++.+
T Consensus 1089 ~~~~~~~~~a~~~~~~Gf~~~KlKvG~~--------------~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1089 GSPLEVAYVARKLVEEGFSAIKLKVGRR--------------VSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCC--------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 48888877666 5677999998875410 13455567788888876 4566677667899999999
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCH
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 149 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~ 149 (287)
+++.+++.++.+|- +. . .+++.+.++++.+++||.+.=.+.+.
T Consensus 1155 ~~~~L~~~~i~~iE-------qP----l-~~~~~l~~l~~~~~iPIA~DEs~~~~ 1197 (1655)
T PLN02980 1155 FGSLVKSCNLKYIE-------EP----V-QDEDDLIKFCEETGLPVALDETIDKF 1197 (1655)
T ss_pred HHHHHhhcCCCEEE-------CC----C-CCHHHHHHHHHhCCCCEEeCCCcCCc
Confidence 99999999888772 10 0 13344555666666666655555544
No 479
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=93.61 E-value=0.37 Score=44.34 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~gad 162 (287)
|.+...++++.+.+.|++.|.+-|-|.+..... ..-..+.++.+++.+ ++|||+.=+=.+.+++.++. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt-~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECATLT-WEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchhCC-HHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 455667888999999999999988876643211 111223445555544 59998766555556665544 346999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+--..+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999998877666
No 480
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=93.60 E-value=1.9 Score=38.59 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=46.8
Q ss_pred CCHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHH
Q 023070 18 NDPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYA 96 (287)
Q Consensus 18 ~~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a 96 (287)
.+++...+-|+ .+++|+|.||||++ | | .....+.+.+++..+.+.+++||++... ++ +.+
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~---------~--~~~~~ee~~r~v~~i~~~~~~piSIDT~------~~-~v~ 83 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD-Y---------G--GLDGVSAMKWLLNLLATEPTVPLMLDST------NW-EVI 83 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-C---------C--CCCHHHHHHHHHHHHHHhcCCcEEeeCC------cH-HHH
Confidence 66676666665 67889999999975 2 1 1223556677777777666899998832 12 233
Q ss_pred HHHHHc--CCCEE-EEe
Q 023070 97 KMLEDA--GCSLL-AVH 110 (287)
Q Consensus 97 ~~l~~~--G~~~I-~vh 110 (287)
+...+. |++.| .|.
T Consensus 84 e~aL~~~~G~~iINsIs 100 (252)
T cd00740 84 EAGLKCCQGKCVVNSIN 100 (252)
T ss_pred HHHHhhCCCCcEEEeCC
Confidence 444443 88866 344
No 481
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.59 E-value=1.2 Score=40.96 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
.|+.+.+-++.+++..+.|+.+.+.... ....+.++.+.+.|++.|.+++.. + .+.++++++. +++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g~----------p-~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAGN----------P-GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCCC----------c-HHHHHHHHHc-CCE
Confidence 5888999999999888889888765421 122355666778999999875321 1 2477888765 777
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
|++ .+.|.+.+.++.+ .|+|.|.+
T Consensus 112 v~~--~v~s~~~a~~a~~-~GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEK-AGADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 774 7889999988887 59999987
No 482
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=93.58 E-value=2.2 Score=40.77 Aligned_cols=140 Identities=16% Similarity=0.241 Sum_probs=94.2
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++.-+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|.+.+.+.+++..+.
T Consensus 140 v~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~~~~~a~~~a~~e 207 (406)
T cd08207 140 VEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPPYSPL------------DERVRAVMRVINDHAQR 207 (406)
T ss_pred CCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcH------------HHHHHHHHHHHHHHHHh
Confidence 45799988774 67899999998854 456676532 23 2444 24455566666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEE----Eec------
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL----ANG------ 144 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi----~nG------ 144 (287)
++.....=.++.-+.++..+-++.+.+.|+.++-|..-+ .-|..+..+++..++||. +.|
T Consensus 208 TG~~~~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p 277 (406)
T cd08207 208 TGRKVMYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLNS----------VGLSGLAALRRHSQLPIHGHRNGWGMLTRSP 277 (406)
T ss_pred hCCcceEEEecCCCHHHHHHHHHHHHHhCCCeEEEeccc----------cchHHHHHHHhcCCceEEECCCcceecccCC
Confidence 666555444554456778888888999999988775332 335667778777888887 344
Q ss_pred --CCCCHHHHHHHHHhcCccEEEEeh
Q 023070 145 --NVRHMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 145 --gI~s~~da~~~l~~~gad~VmiGR 168 (287)
||.. .-..+++.-.|+|.+.++.
T Consensus 278 ~~Gis~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 278 ALGISF-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred CCCCcH-HHHHHHHHHcCCCccccCC
Confidence 4443 3466777778999999865
No 483
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=93.56 E-value=0.25 Score=42.39 Aligned_cols=142 Identities=22% Similarity=0.334 Sum_probs=79.1
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCChhh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD 91 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~ 91 (287)
|+|||- +++++..++ +.|+|.+=+.+- |.+ .+ .-.++.+.++++.+.. .+|.|-. ..+
T Consensus 1 vKICGi~~~~da~~~~---~~g~d~~Gfi~~-~~S--~R-------~v~~~~a~~l~~~~~~---~~VgVf~-----~~~ 59 (197)
T PF00697_consen 1 VKICGITRPEDARLAA---ELGADYLGFIFY-PKS--PR-------YVSPDQARELVSAVPP---KIVGVFV-----NQS 59 (197)
T ss_dssp EEEE---SHHHHHHHH---HHTSSEEEEE---TTC--TT-------B--HHHHHHHHCCSSS---SEEEEES-----SS-
T ss_pred CeECCCCcHHHHHHHH---HcCCCEEeeecC-CCC--CC-------ccCHHHHHHHHHhcCC---CEEEEEc-----CCC
Confidence 467774 555544443 457787777753 221 00 1245666666554431 1444442 234
Q ss_pred HHHHHHHHHHcCCCEEEEeccCC--------------------C--------------------CcCCCCc-cccHHHHH
Q 023070 92 TIKYAKMLEDAGCSLLAVHGRTR--------------------D--------------------EKDGKKF-RADWNAIK 130 (287)
Q Consensus 92 ~~~~a~~l~~~G~~~I~vh~rt~--------------------~--------------------~~~~~~~-~~~~~~i~ 130 (287)
..++.+.+.+.+.+.|.+||-.. . ...+++| ..||+.++
T Consensus 60 ~~~I~~~~~~~~ld~vQLHG~e~~e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~~~dw~~~~ 139 (197)
T PF00697_consen 60 PEEILEIVEELGLDVVQLHGDESPEYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGKTFDWSLLK 139 (197)
T ss_dssp HHHHHHHHHHCTESEEEE-SGG-HHHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS---GGGGC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCHHHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCcccCHHHhh
Confidence 44566667788888888887320 0 0011122 46899888
Q ss_pred HHHhh-CCCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCccc
Q 023070 131 AVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176 (287)
Q Consensus 131 ~i~~~-~~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~l 176 (287)
.+.+. .+.|++..||| +++.+.++++..+..||=+..|.=.+|..
T Consensus 140 ~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 140 KIVESYSPKPVILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp CCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred hhhhhcccCcEEEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 88764 37999999999 57899999998899999998888666654
No 484
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.53 E-value=0.42 Score=43.54 Aligned_cols=87 Identities=13% Similarity=0.117 Sum_probs=59.8
Q ss_pred ChhhHHHHHHHHHH-cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHH---HhcCc
Q 023070 88 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 161 (287)
Q Consensus 88 ~~~~~~~~a~~l~~-~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l---~~~ga 161 (287)
+.+....+++.+.+ .|++.|.+-|.+.+.... +..-..+.++.+.+.+ ++||++.=|-.+.+++.++. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~L-s~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLL-STEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccC-CHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 45667788999999 999999998877664221 1112234455555554 48998766556667665443 44799
Q ss_pred cEEEEehhhhhCcc
Q 023070 162 EGVLSAESLLENPA 175 (287)
Q Consensus 162 d~VmiGR~~l~nP~ 175 (287)
|+||+--+.+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999998887773
No 485
>PRK15452 putative protease; Provisional
Probab=93.43 E-value=4.1 Score=39.53 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhccCCcEEEEecCCCCh---hhHHH
Q 023070 18 NDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL---QDTIK 94 (287)
Q Consensus 18 ~~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~---~~~~~ 94 (287)
.+.+.+.. +++.|+|.|-+-...-....+...+ ..+.+.+.++..++ .++.|.+.+..-... ....+
T Consensus 11 g~~e~l~a---Ai~~GADaVY~G~~~~~~R~~~~~f------~~edl~eav~~ah~-~g~kvyvt~n~i~~e~el~~~~~ 80 (443)
T PRK15452 11 GTLKNMRY---AFAYGADAVYAGQPRYSLRVRNNEF------NHENLALGINEAHA-LGKKFYVVVNIAPHNAKLKTFIR 80 (443)
T ss_pred CCHHHHHH---HHHCCCCEEEECCCccchhhhccCC------CHHHHHHHHHHHHH-cCCEEEEEecCcCCHHHHHHHHH
Confidence 34444433 3567999999843211111111111 23445566555443 367777776654433 34456
Q ss_pred HHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhh-CCCcEEEec--CCCCHHHHHHHHHhcCccEEEEehhh
Q 023070 95 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESL 170 (287)
Q Consensus 95 ~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipVi~nG--gI~s~~da~~~l~~~gad~VmiGR~~ 170 (287)
..+.+.+.|+|+|+|. |+..+..+++. +++||.++- .|++...+.-+.+ .|++.|.++|-+
T Consensus 81 ~l~~l~~~gvDgvIV~--------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~-lG~~rvvLSrEL 144 (443)
T PRK15452 81 DLEPVIAMKPDALIMS--------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQ-MGLTRVILSREL 144 (443)
T ss_pred HHHHHHhCCCCEEEEc--------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHH-CCCcEEEECCcC
Confidence 6777889999999885 34556666664 367777665 4677666664444 688888888765
No 486
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.25 E-value=0.42 Score=46.74 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
+..+.++.+.+.|++.|.+..-... ...-++.++++++.. +++|++ |+|.|.+.+..+++ .|||+|-+|-|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~-aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVE-AGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHH-cCCCEEEECcc
Confidence 4567888899999999988532221 134578899999875 566666 99999999999998 69999875533
No 487
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=93.24 E-value=2.8 Score=39.90 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=93.5
Q ss_pred CCCCCEEEEec----CCCHHHHHHHHHHH-cCCCCEEEE--ec----cCChhhhhcCcccccccCChHHHHHHHHHHhhc
Q 023070 6 PEDRPLFVQFC----ANDPEILLNAARRV-EPYCDYVDI--NL----GCPQRIARRGNYGAFLMDNLPLVKSLVEKLALN 74 (287)
Q Consensus 6 ~~~~p~~~Qi~----g~~~~~~~~aA~~~-~~g~d~Idi--N~----gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 74 (287)
-.++|++..+. |-+|+++++.+..+ ..|.|.|.= |+ .||. .+|...+.+.+++..+.
T Consensus 121 v~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~------------~eRv~a~~~a~~~a~~e 188 (391)
T cd08209 121 VHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPA------------LERIRACRPVLQEVYEQ 188 (391)
T ss_pred CCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCH------------HHHHHHHHHHHHHHHHh
Confidence 45799988874 67899999998854 446776532 22 2444 24555666666666666
Q ss_pred cCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHh--hCCCcEEE----ec----
Q 023070 75 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLA----NG---- 144 (287)
Q Consensus 75 ~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipVi~----nG---- 144 (287)
++.....=.++.-+.++..+-++.+.+.|+.++-+..-+ .-|..+..+++ ..++||.+ .|
T Consensus 189 TG~~~~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~----------~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~ 258 (391)
T cd08209 189 TGRRTLYAVNLTGPVFTLKEKARRLVEAGANALLFNVFA----------YGLDVLEALASDPEINVPIFAHPAFAGALYG 258 (391)
T ss_pred hCCcceEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeccc----------cchHHHHHHHhcCcCCcEEEecCCccccccc
Confidence 666555555554456788888889999999988775322 23456677776 45677762 23
Q ss_pred ----CCCCHHHHHHHHHhcCccEEEEehh
Q 023070 145 ----NVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 145 ----gI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
||...--..+++.-.|+|.+.++..
T Consensus 259 ~~~~Gis~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 259 SPDYGIAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CCCCCCcHHHHHHHHHHHcCCCccccCCc
Confidence 4543345567777789999988764
No 488
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=93.21 E-value=0.8 Score=42.08 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=45.9
Q ss_pred cCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhhhCcc
Q 023070 102 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 175 (287)
Q Consensus 102 ~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l~nP~ 175 (287)
+|+|.|-+......+... ..+.+.+++..+.+ ..|+.++||| +++.+.++.. +|+|.+.+|.-...-|+
T Consensus 228 agaDiImLDnm~~~~~~~---~~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~-tGVD~Is~Galthsa~~ 298 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENG---DVDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQ-TGVTYISSGALTHSVKA 298 (308)
T ss_pred CCCCEEEeCCCccccccc---CCCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHH-cCCCEEEeCccccCCCc
Confidence 899999886541111111 23445566555443 4789999999 5788888877 79999999964443344
No 489
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=93.19 E-value=1.4 Score=41.05 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=70.9
Q ss_pred HHHHHHHHH-HcCCCCEEEEec-------cCChhhhhcCcccccccCCh----HHHHHHHHHHhh-ccCCcEEEEecCC-
Q 023070 21 EILLNAARR-VEPYCDYVDINL-------GCPQRIARRGNYGAFLMDNL----PLVKSLVEKLAL-NLNVPVSCKIRVF- 86 (287)
Q Consensus 21 ~~~~~aA~~-~~~g~d~IdiN~-------gcP~~~~~~~~~G~~l~~~~----~~~~~iv~~v~~-~~~~pv~vKiR~g- 86 (287)
+...+..+. ...||.+|.+-- |-|.+...+.--..++++.. .-+...++.+++ ..+.||.+-+...
T Consensus 66 ~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i~vsi~~~~ 145 (335)
T TIGR01036 66 DKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPIGINIGKNK 145 (335)
T ss_pred CCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcEEEEEeCCC
Confidence 344444543 456999999862 22222111110012233221 123444444443 2345665554221
Q ss_pred --C---ChhhHHHHHHHHHHcCCCEEEE--eccCCCCc-CCCCccccHHHHHHHHhhCC-------CcEE--EecCCC--
Q 023070 87 --P---NLQDTIKYAKMLEDAGCSLLAV--HGRTRDEK-DGKKFRADWNAIKAVKNALR-------IPVL--ANGNVR-- 147 (287)
Q Consensus 87 --~---~~~~~~~~a~~l~~~G~~~I~v--h~rt~~~~-~~~~~~~~~~~i~~i~~~~~-------ipVi--~nGgI~-- 147 (287)
. ..++..+.++.+.+ .+|+|.+ +.-..... .......-.+.++.+++.++ +||+ .+-++.
T Consensus 146 ~~~~~~~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~ 224 (335)
T TIGR01036 146 DTPSEDAKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTES 224 (335)
T ss_pred CCCcccCHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHH
Confidence 1 23344444444443 3999977 22221111 01000111244566665554 8887 445554
Q ss_pred CHHHHHHHHHhcCccEEEEehhhh
Q 023070 148 HMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 148 s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+..++.+.+.+.|+|||.+.--+.
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCC
Confidence 366666666668999998765443
No 490
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=93.18 E-value=2.5 Score=36.16 Aligned_cols=122 Identities=20% Similarity=0.257 Sum_probs=70.1
Q ss_pred EEecCC-CHHHHHHHHHHHcCCCCEEEEeccCChhhhhcCcccccccCChHHHHHHHHHHhhcc-CCcEEEEecCCCChh
Q 023070 13 VQFCAN-DPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQ 90 (287)
Q Consensus 13 ~Qi~g~-~~~~~~~aA~~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~pv~vKiR~g~~~~ 90 (287)
++|||- ++++...| ++.|+|.|-+-+--+.+. .-+++.+.++.+.+.... .++|.+. +
T Consensus 1 vKiCGi~~~ed~~~a---~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn-------~ 60 (203)
T cd00405 1 VKICGITTLEDALAA---AEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVN-------E 60 (203)
T ss_pred CEECCCCCHHHHHHH---HHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeC-------C
Confidence 357774 45544333 456899999986432210 123566666666654421 3445443 2
Q ss_pred hHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH--HHHhcCccEEEE
Q 023070 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK--CLEETGCEGVLS 166 (287)
Q Consensus 91 ~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~--~l~~~gad~Vmi 166 (287)
+..++.+.+.+.|+++|++|+.. +.+.++.+++..+.+++-.=++.+..+... ... .++|.+++
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e-----------~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~-~~aD~il~ 126 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDE-----------SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYA-GEVDAILL 126 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCC-----------CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhcc-ccCCEEEE
Confidence 33445556668899999999642 124567777766666664334555555442 222 58999865
No 491
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=93.06 E-value=4 Score=37.02 Aligned_cols=161 Identities=20% Similarity=0.321 Sum_probs=90.8
Q ss_pred CCCCEEEEecCCCHHH------HHHHHH-HHcCCCCEEEEec-cCCh--h--hhhcCcccccccC--------ChHHHHH
Q 023070 7 EDRPLFVQFCANDPEI------LLNAAR-RVEPYCDYVDINL-GCPQ--R--IARRGNYGAFLMD--------NLPLVKS 66 (287)
Q Consensus 7 ~~~p~~~Qi~g~~~~~------~~~aA~-~~~~g~d~IdiN~-gcP~--~--~~~~~~~G~~l~~--------~~~~~~~ 66 (287)
...|+|+|+.-....- ++...+ +++..--=|-||+ .|+. . ...+.+|.|-+++ +....++
T Consensus 41 ~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eENi~~tke 120 (286)
T COG0191 41 EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHLPFEENIAITKE 120 (286)
T ss_pred hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcCCHHHHHHHHHH
Confidence 4679999996543332 223333 2333222355664 3433 2 3345666665543 3334455
Q ss_pred HHHHHhhccCCcEEEEecC-C-C--------C---hhhHHHHHHHHHHcCCCEEEEeccCCCCcCC-CCccccHHHHHHH
Q 023070 67 LVEKLALNLNVPVSCKIRV-F-P--------N---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAV 132 (287)
Q Consensus 67 iv~~v~~~~~~pv~vKiR~-g-~--------~---~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~-~~~~~~~~~i~~i 132 (287)
+++... ..+++|-+-+.. | . + ..++.+..+.++..|+|.|.+.=.+.-+.+. .....+.+.++++
T Consensus 121 vv~~ah-~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i 199 (286)
T COG0191 121 VVEFAH-AYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEI 199 (286)
T ss_pred HHHHHH-HcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHH
Confidence 555432 335666555432 1 1 1 2244455556667889999663222222222 1224688999999
Q ss_pred HhhCCCcEEEecCCC-CHHHHHHHHHhcCccEEEEehh
Q 023070 133 KNALRIPVLANGNVR-HMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 133 ~~~~~ipVi~nGgI~-s~~da~~~l~~~gad~VmiGR~ 169 (287)
++.+++|++.-||=- +.+++++.++ .|+--|=|.+-
T Consensus 200 ~~~~~~PlVlHGgSGip~~eI~~aI~-~GV~KvNi~Td 236 (286)
T COG0191 200 QEAVSLPLVLHGGSGIPDEEIREAIK-LGVAKVNIDTD 236 (286)
T ss_pred HHHhCCCEEEeCCCCCCHHHHHHHHH-hCceEEeeCcH
Confidence 999999999777532 4478899998 58877777653
No 492
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=93.02 E-value=1.3 Score=39.70 Aligned_cols=103 Identities=15% Similarity=0.268 Sum_probs=63.5
Q ss_pred HHHHHHhhccCCcEEEEecCCC-ChhhHHHHHHHHHHcCCCEEEEeccCCCCc---------------CCCCccccHHHH
Q 023070 66 SLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAI 129 (287)
Q Consensus 66 ~iv~~v~~~~~~pv~vKiR~g~-~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~---------------~~~~~~~~~~~i 129 (287)
+..+.++..-..-+..=+-.|+ +.+.+.++++.+.+.|+|.|-+-=-+.++. .+.+....++.+
T Consensus 6 ~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~ 85 (265)
T COG0159 6 QKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELV 85 (265)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3344444333223334444565 788999999999999999998831111111 112223457888
Q ss_pred HHHHhh-CCCcEEEecCCC-----CHHHHHHHHHhcCccEEEEeh
Q 023070 130 KAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAE 168 (287)
Q Consensus 130 ~~i~~~-~~ipVi~nGgI~-----s~~da~~~l~~~gad~VmiGR 168 (287)
+++++. .++|++.-+-.+ -.+...+..++.|+||+++-=
T Consensus 86 ~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD 130 (265)
T COG0159 86 EEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD 130 (265)
T ss_pred HHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 888854 789998776432 234444555668999999853
No 493
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.02 E-value=0.56 Score=42.23 Aligned_cols=86 Identities=27% Similarity=0.379 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEecCCCCHHHHHHH---HHhcCcc
Q 023070 88 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 162 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~nGgI~s~~da~~~---l~~~gad 162 (287)
|.+...++++.+.+.|++.|.+-|-+.+..... ..-..+.++.+.+.+ ++||++.-+-.+.+++.+. .++.|+|
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls-~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLT-DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCC-HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 556677889999999999999988776643211 111124455555554 5898866555555555443 3446999
Q ss_pred EEEEehhhhhCc
Q 023070 163 GVLSAESLLENP 174 (287)
Q Consensus 163 ~VmiGR~~l~nP 174 (287)
+||+.-..+..|
T Consensus 95 ~v~v~pP~y~~~ 106 (281)
T cd00408 95 GVLVVPPYYNKP 106 (281)
T ss_pred EEEECCCcCCCC
Confidence 999988776554
No 494
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.98 E-value=0.57 Score=42.61 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=46.3
Q ss_pred CHHHHHHHHH-HHcCCCCEEEEeccCChhhhhcCccccccc---CChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHH
Q 023070 19 DPEILLNAAR-RVEPYCDYVDINLGCPQRIARRGNYGAFLM---DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIK 94 (287)
Q Consensus 19 ~~~~~~~aA~-~~~~g~d~IdiN~gcP~~~~~~~~~G~~l~---~~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~ 94 (287)
+++...+-|. ++++|+|.|||+.-+-.+ |+... ...+.+..+++++++..++||+|...- .+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-------g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~-------~~ 101 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSK-------PE 101 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCC-------HH
Confidence 4555555444 678899999999533211 22222 234456678888887778999988421 24
Q ss_pred HHHHHHHcCCCEE
Q 023070 95 YAKMLEDAGCSLL 107 (287)
Q Consensus 95 ~a~~l~~~G~~~I 107 (287)
.++.+.++|++.|
T Consensus 102 va~~AL~~GadiI 114 (282)
T PRK11613 102 VIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHcCCCEE
Confidence 4555556677766
No 495
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=92.89 E-value=1.3 Score=41.32 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=69.5
Q ss_pred cCChHHHHHHHHHHhhccCCcEEEEecC--C----C----C-----hhhHHHHHHHHHHcCC----CEEEEeccCCCCcC
Q 023070 58 MDNLPLVKSLVEKLALNLNVPVSCKIRV--F----P----N-----LQDTIKYAKMLEDAGC----SLLAVHGRTRDEKD 118 (287)
Q Consensus 58 ~~~~~~~~~iv~~v~~~~~~pv~vKiR~--g----~----~-----~~~~~~~a~~l~~~G~----~~I~vh~rt~~~~~ 118 (287)
..+.+..+++++... ..+++|-.-+.. | . . ..++.+..+.+++.|+ |.+.|.=+|.-+.+
T Consensus 142 EeNI~~TkevVe~Ah-~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Y 220 (350)
T PRK09197 142 EENIEICSKYLERMA-KAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVY 220 (350)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCc
Confidence 345666677666554 335555443321 1 0 0 1233333344456777 89977544444333
Q ss_pred C-CCccccHHHHHHHHhhC---------CCcEEEecCCCCH-HHHHHHHHhcCccEEEEehhhh
Q 023070 119 G-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 119 ~-~~~~~~~~~i~~i~~~~---------~ipVi~nGgI~s~-~da~~~l~~~gad~VmiGR~~l 171 (287)
. .....|++.++++++.+ ++|++.-||=..+ ++++++++ .|+.-|=|++.+.
T Consensus 221 k~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~-~GI~KINi~T~l~ 283 (350)
T PRK09197 221 KPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS-YGVVKMNIDTDTQ 283 (350)
T ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH-CCCeeEEeCcHHH
Confidence 2 22357899999999988 7999988875555 67777887 6898888887653
No 496
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=92.85 E-value=0.65 Score=42.30 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHHHcC-CCEEEEeccCCCCcCCCCccccHHHHHHHHhhC--CCcEEEe-cCCCCHHHHHHH---HHhcC
Q 023070 88 NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKC---LEETG 160 (287)
Q Consensus 88 ~~~~~~~~a~~l~~~G-~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipVi~n-GgI~s~~da~~~---l~~~g 160 (287)
+.+...+.++.+.+.| ++.|.+.|-|.+..... ..-..+.++.+.+.+ ++||++. |+..+ +++.+. .++.|
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt-~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t-~~~i~la~~a~~~G 96 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLS-TEEKKEIFRIAKDEAKDQIALIAQVGSVNL-KEAVELGKYATELG 96 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcccccccCC-HHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHHhC
Confidence 4556678888899999 99999988877643221 111223444455544 5898766 55544 544433 34579
Q ss_pred ccEEEEehhhhhCcc
Q 023070 161 CEGVLSAESLLENPA 175 (287)
Q Consensus 161 ad~VmiGR~~l~nP~ 175 (287)
+|+||+.-+.+..|.
T Consensus 97 ad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 97 YDCLSAVTPFYYKFS 111 (290)
T ss_pred CCEEEEeCCcCCCCC
Confidence 999999988877664
No 497
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=92.83 E-value=1.3 Score=40.24 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcc-CCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHH-HHHHHHh-hCCCcE
Q 023070 64 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKN-ALRIPV 140 (287)
Q Consensus 64 ~~~iv~~v~~~~-~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~-~i~~i~~-~~~ipV 140 (287)
+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+-..+ +.++. .++.+++ ..++.+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~ea~~agaDiI~LDn~~---------~e~l~~av~~~~~~~~~~~l 239 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIAALRAQPDVLQLDKFS---------PQQATEIAQIAPSLAPHCTL 239 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHhhccCCCeEE
Confidence 345566666543 344555542 3445666678999999884222 12222 2222221 246789
Q ss_pred EEecCCCCHHHHHHHHHhcCccEEEEehh
Q 023070 141 LANGNVRHMEDVQKCLEETGCEGVLSAES 169 (287)
Q Consensus 141 i~nGgI~s~~da~~~l~~~gad~VmiGR~ 169 (287)
.++||| +++.+.++-+ +|+|.+.+|--
T Consensus 240 eaSGGI-~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 240 SLAGGI-NLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEECcc
Confidence 999999 5788888887 79999988864
No 498
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.79 E-value=2.6 Score=36.64 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhhccCCcEEEEecCCCChhhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCc
Q 023070 60 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 139 (287)
Q Consensus 60 ~~~~~~~iv~~v~~~~~~pv~vKiR~g~~~~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 139 (287)
+++.+.++++.+++..+.|+.+.+-.........++++.+.++|++.|++++. . ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~---------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG--P---------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--C---------CHHHHHHHHH-cCCE
Confidence 56777788888876555566655544321135667888899999999999754 1 1244555554 4677
Q ss_pred EEEecCCCCHHHHHHHHHhcCccEEEE
Q 023070 140 VLANGNVRHMEDVQKCLEETGCEGVLS 166 (287)
Q Consensus 140 Vi~nGgI~s~~da~~~l~~~gad~Vmi 166 (287)
++.. +.+.+++.++.+ .|+|++.+
T Consensus 105 ~i~~--v~~~~~~~~~~~-~gad~i~~ 128 (236)
T cd04730 105 VIPT--VTSVEEARKAEA-AGADALVA 128 (236)
T ss_pred EEEe--CCCHHHHHHHHH-cCCCEEEE
Confidence 7653 678888887776 58999876
No 499
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.74 E-value=3.4 Score=35.65 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=36.2
Q ss_pred HHHHHHHhhC-CCcEEEecCCCCHHHHHHHHHhcCccEEEEehhhh
Q 023070 127 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 171 (287)
Q Consensus 127 ~~i~~i~~~~-~ipVi~nGgI~s~~da~~~l~~~gad~VmiGR~~l 171 (287)
+.+.++++.+ +.|+-..=||.++++....=. -+|||++|..+.
T Consensus 196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgs--vaDGVvvGSkiv 239 (268)
T KOG4175|consen 196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGS--VADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhcCCCceeEeeccCCHHHHHhhhh--hccceEecHHHH
Confidence 4577888887 799988889999999997776 499999998775
No 500
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=92.70 E-value=0.65 Score=38.41 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHcCCCEEEEeccCCCCcCCCCccccHHHHHHHHhhCCCcEEEecCCCCHHHHHH----HHHhcCccEEE
Q 023070 90 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 165 (287)
Q Consensus 90 ~~~~~~a~~l~~~G~~~I~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipVi~nGgI~s~~da~~----~l~~~gad~Vm 165 (287)
+...++++.+.+.|++.+.+........... ...++.+..+++..++|++++..+.++.+... .....|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 4678889999999999998865443322111 11224567777778899999998877776542 44557999999
Q ss_pred Eehhh
Q 023070 166 SAESL 170 (287)
Q Consensus 166 iGR~~ 170 (287)
+.-..
T Consensus 90 l~~~~ 94 (200)
T cd04722 90 IHGAV 94 (200)
T ss_pred EeccC
Confidence 97554
Done!