RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023070
(287 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 94.7 bits (234), Expect = 3e-23
Identities = 58/261 (22%), Positives = 113/261 (43%), Gaps = 13/261 (4%)
Query: 6 PEDRPLFVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVK 65
P +R + VQ ++P L AAR + ++D+N GCP R + G L+ +L +
Sbjct: 52 PHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFR 111
Query: 66 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 125
+V +L +++ S K R+ + + ++L + G + +H RT RA+
Sbjct: 112 YIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--VQSFTGRAE 169
Query: 126 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 185
W A+ ++ + V +G++ ED ++ LEE+GC+G+L A + P +F +
Sbjct: 170 WKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR 227
Query: 186 IVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNA 245
S + S+ + +L+L K + + + K L + + G R
Sbjct: 228 ---SGKYSEPSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLKGARRFREK 283
Query: 246 QNRLT-----FEFLYNLVDRL 261
++ E YN + +
Sbjct: 284 VMKIEEVQILKEMFYNFIKEV 304
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 48.7 bits (115), Expect = 2e-07
Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 44/210 (20%)
Query: 5 PPEDRPLFVQFCANDPEILLNAARRVE-PYCDYVDINLGCPQRIARR------------- 50
D PL I+ A + N +
Sbjct: 13 ALPDEPLH------SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRD 66
Query: 51 -GNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKY-------------- 95
+ F+ V L+E + + + + R L + + Y
Sbjct: 67 YDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI 126
Query: 96 -----AKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 148
AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186
Query: 149 MEDVQKCLEETGCEGVLSAESLLENPALFA 178
+ ++ + + G + ++ P
Sbjct: 187 PDMYKRVM-DLGVHCSVVGGAIT-RPKEIT 214
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 48.0 bits (113), Expect = 4e-07
Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 25/176 (14%)
Query: 12 FVQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKL 71
+ N + + + + D +++NL CP + RG A D LV+++ +
Sbjct: 108 SIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPE-LVRNICRWV 166
Query: 72 ALNLNVPVSCKIRVFPNLQDTIKYA--KMLEDAGCSLLAVHGRTRDEKDGKKFRA----- 124
+ +P K+ +I A + D + V G + DG + A
Sbjct: 167 RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGK 226
Query: 125 ---------------DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGV 164
A+ + AL P+LA G + E + L +G +
Sbjct: 227 RTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFL-HSGASVL 281
>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 252
Score = 45.0 bits (106), Expect = 4e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 151 DVQKCLEETGCEGVLSAESLLEN 173
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 44.6 bits (104), Expect = 6e-06
Identities = 30/184 (16%), Positives = 57/184 (30%), Gaps = 25/184 (13%)
Query: 13 VQFCANDPEILLNAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 72
V + + A +++N+ CP + + + +LV+
Sbjct: 105 VAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACK 160
Query: 73 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------------- 119
VP+ K+ PN+ D + AK +E AG L + +
Sbjct: 161 AVSKVPLYVKL--SPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITG 218
Query: 120 -----KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
I V + IP++ G V + +DV + G V + +P
Sbjct: 219 GLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADP 277
Query: 175 ALFA 178
+
Sbjct: 278 FVCP 281
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 42.2 bits (98), Expect = 4e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 78 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 132
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 133 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 42.1 bits (98), Expect = 4e-05
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 13/164 (7%)
Query: 19 DPEILLNAARRVEPYCDYVDINLGC-PQRI-----ARRGNYGAFLMDNLPLVKSLVEKLA 72
E R + I+ Q + +R + + ++
Sbjct: 141 AAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 200
Query: 73 LNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 129
C I R +L + + E G + ++ +D + D I
Sbjct: 201 GEKYCWYQCTIKGGRESRDLGV-WELTRACEALGAGEILLNCIDKDGSNS---GYDLELI 256
Query: 130 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ VK+A++IPV+A+ E ++ +T + L A
Sbjct: 257 EHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRG 300
Score = 26.7 bits (58), Expect = 3.3
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 74 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 133
+V + NL ++ A+ G + T K +K
Sbjct: 32 QYDVREKSDGKGVRNLGKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAA 91
Query: 134 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
+ +P+ G ++ + DV + T + A + A T
Sbjct: 92 KTVFVPLTVGGGIKDIVDV----DGTKIPALEVASLYFRSGADKVSIGTD 137
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 41.4 bits (96), Expect = 5e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 92 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 151
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 152 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 183
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermus
thermophilus [TaxId: 274]}
Length = 251
Score = 38.2 bits (88), Expect = 6e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 91 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 150
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 151 DVQKCLEETGCEGVLSAESLLEN 173
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 38.0 bits (87), Expect = 9e-04
Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 7/157 (4%)
Query: 27 ARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRVF 86
+ Y+ P R YG + ++ +++++ + P+ ++
Sbjct: 159 VIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSAS 218
Query: 87 PNLQD------TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIP 139
I +AK +++ G L+ D F + + ++ +
Sbjct: 219 DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMA 278
Query: 140 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
A G + ++ L+ + + LL +P
Sbjct: 279 TGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF 315
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 88 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 144
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 145 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 196
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 253 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 284
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 36.4 bits (83), Expect = 0.002
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 117 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC--LEETGCEGVLSAESLLEN 173
KDG + +K V A PV+A+G V ++D++ L G EG + ++L
Sbjct: 169 KDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAK 227
>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus
subtilis [TaxId: 1423]}
Length = 251
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 82 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPV 140
V P D + A+ LE+ G + G + + + ++PV
Sbjct: 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPI----GSGQGILNPLNLSFIIEQAKVPV 180
Query: 141 LANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 183
+ + + +D + E G +GVL +A S ++P A + A
Sbjct: 181 IVDAGIGSPKDAAYAM-ELGADGVLLNTAVSGADDPVKMARAMKLA 225
>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli
[TaxId: 562]}
Length = 289
Score = 35.1 bits (80), Expect = 0.006
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 81 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 140
L I+ A+ +AG +L T + + +A+++P+
Sbjct: 157 TDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPI 205
Query: 141 LANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFAGFRTAEWIV--GSEEISKDG 196
LAN + L L S A + G+++ D
Sbjct: 206 LANITEFGATPLFTTDELRSAHVAMALYPLSAFR-AMNRAAEHVYNVLRQEGTQKSVIDT 264
Query: 197 NLDQADL--LVEYLKLCEKY 214
+ +L + Y + EK
Sbjct: 265 MQTRNELYESINYYQYEEKL 284
>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Serratia marcescens [TaxId: 615]}
Length = 192
Score = 32.9 bits (74), Expect = 0.026
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 253 FLYNLVDRLRELGVRIPLYKKDADDAEILADDLA 286
F YNLVD+LR G ++ +Y+ I+
Sbjct: 12 FTYNLVDQLRASGHQVVIYRNQIGAEVIIERLQH 45
>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 188
Score = 32.2 bits (72), Expect = 0.040
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 253 FLYNLVDRLRELGVRIPLYKKDADDAEI 280
+++ + LR LGV + EI
Sbjct: 12 YVHRIWRTLRYLGVETKIIPNTTPLEEI 39
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 195
Score = 31.0 bits (69), Expect = 0.095
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 253 FLYNLVDRLRELGVRIPLYKKDADDAE 279
F+YN+ + ELG + + D +
Sbjct: 13 FVYNIAQIVGELGSYPIVIRNDEISIK 39
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 29.0 bits (65), Expect = 0.15
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 182 TAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY 214
T +W++ + E ++ +L ++ L YL ++
Sbjct: 1 TVQWLLDNYETAEGVSLPRSTLYNHYLLHSQEQ 33
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 30.1 bits (67), Expect = 0.21
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 116 EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
++DG K D I+ V+ +P++A+G ME + G + L+A
Sbjct: 174 DRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLE-AFLAGADAALAASVFHFR 230
>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Thermotoga maritima
[TaxId: 2336]}
Length = 241
Score = 29.6 bits (65), Expect = 0.38
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 118 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK-----CLEETGCEGVLSAESLLE 172
DG D++ K + + VLA G + ++ +GV+ + LE
Sbjct: 169 DGTLQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLE 228
Query: 173 N 173
Sbjct: 229 G 229
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 29.6 bits (66), Expect = 0.39
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 82 KIRVFPNLQDTIKY-AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 131
F A L AG S++ ++ +T + + + + I A
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILA 88
>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon
(Pyrococcus furiosus) [TaxId: 2261]}
Length = 206
Score = 28.3 bits (62), Expect = 0.87
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 96 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 155
A E G L + ++ + +++IPV+A G + ++ ++
Sbjct: 112 ALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREV 170
Query: 156 LEETGCEGVLSAESLLENP 174
L +TG +G+ +++
Sbjct: 171 L-KTGVDGIAVISAVMGAE 188
>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
candidum [TaxId: 27317]}
Length = 439
Score = 28.6 bits (63), Expect = 0.91
Identities = 1/30 (3%), Positives = 5/30 (16%)
Query: 2 KNLPPEDRPLFVQFCANDPEILLNAARRVE 31
++ + L +
Sbjct: 107 APFTGTTIHGVFLIGSDQDDFLDQFTDDIS 136
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 28.4 bits (62), Expect = 1.2
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 176
+ V + + PV+ GN +V + + + + NP L
Sbjct: 308 SNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDL 356
>d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]}
Length = 332
Score = 27.3 bits (59), Expect = 2.4
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 215 PVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLT 250
+ +L + + + PGV ++
Sbjct: 254 GANCYDEIKKIRELFPDCYILAPGVGAQKGDLRKML 289
>d2gvka1 d.58.4.14 (A:8-316) Hypothetical protein BT1219
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 309
Score = 26.4 bits (58), Expect = 4.0
Identities = 3/20 (15%), Positives = 5/20 (25%)
Query: 11 LFVQFCANDPEILLNAARRV 30
L A + A +
Sbjct: 101 LLFHIRAKQMGLCFEFASIL 120
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 25.8 bits (57), Expect = 4.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 128 AIKAVKNALRIPVLANGNVRHMEDVQKCLE 157
A K + V+A G V E+ ++ L+
Sbjct: 128 APKVARKIPGRTVIAAGLVETEEEAREILK 157
>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsA [TaxId: 1358]}
Length = 168
Score = 26.1 bits (57), Expect = 4.5
Identities = 7/69 (10%), Positives = 19/69 (27%), Gaps = 17/69 (24%)
Query: 201 ADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 260
+++ E + L ++ E E+ Y + ++
Sbjct: 31 SNIFYEKISL---MQAGLYAKSANYRIKFREIA-------LKE-------DEWFYLISEQ 73
Query: 261 LRELGVRIP 269
L + +P
Sbjct: 74 LLDENELVP 82
>d2iiza1 d.58.4.14 (A:5-310) Melanin biosynthesis protein TyrA
{Shewanella oneidensis [TaxId: 70863]}
Length = 306
Score = 26.0 bits (57), Expect = 5.5
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 11 LFVQFCANDPEILLNAARRV 30
LFV + +IL A +
Sbjct: 98 LFVHLRCDRYDILHLVANEI 117
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 26.0 bits (56), Expect = 6.4
Identities = 15/93 (16%), Positives = 29/93 (31%)
Query: 81 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 140
+I+ P L+D K+L G + D + F A ++ +K ++ ++
Sbjct: 39 VEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVWIDASNVNNFSAPYDLVKTMRASIWALG 98
Query: 141 LANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 173
+ G V LE
Sbjct: 99 PLVARFGQGQVSLPGGCAIGARPVDLHIFGLEK 131
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 202
Score = 25.4 bits (54), Expect = 6.8
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 198 LDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN--RLTFEFLY 255
+ + V + ++ RE +A+ T E
Sbjct: 130 TGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFC 189
Query: 256 NLVDRLRELG 265
+V+R +E+G
Sbjct: 190 GIVNRWKEMG 199
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 25.5 bits (56), Expect = 7.3
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 62 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSL------LAVHGR--- 112
++ S++ V V +++ + + I +AK L +AG + L +H +
Sbjct: 67 RIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFL 126
Query: 113 -TRDEKDGKKFRADW 126
+R E A
Sbjct: 127 ISRKENGEVVRYAHI 141
>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog
{Lactococcus lactis, DpsB [TaxId: 1358]}
Length = 171
Score = 25.2 bits (55), Expect = 7.7
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 17/69 (24%)
Query: 201 ADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDR 260
++L +E ++L + L E + E+ + + D
Sbjct: 34 SNLFIENIRL---TQAGIYAKSPVKCEYLREIA-------QRE-------VEYFFKISDL 76
Query: 261 LRELGVRIP 269
L + +P
Sbjct: 77 LLDENEIVP 85
>d1o59a2 b.18.1.22 (A:194-343) Allantoicase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 150
Score = 25.2 bits (55), Expect = 7.8
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 28 RRVEPYCDYVDINLGCPQRIARRGN 52
R + D+ I LG +
Sbjct: 46 SRQPGHTDWAVIQLGRESSFIEKII 70
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 267
Score = 25.2 bits (54), Expect = 9.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 86 FPNLQDTIKYAKMLEDAGCSLLAV 109
P ++ ++K L DAG L +
Sbjct: 27 DPGIEQSLKIIDTLIDAGADALEL 50
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 25.2 bits (54), Expect = 9.3
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 86 FPNLQDTIKYAKMLEDAGCSLL 107
P+L T + ++L+ G ++
Sbjct: 27 DPDLATTAEALRLLDGCGADVI 48
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 247
Score = 25.1 bits (54), Expect = 9.6
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 138 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 174
+ +A + ++++ L + G L SL+ NP
Sbjct: 204 VVKVAESGISERNEIEE-LRKLGVNAFLIGSSLMRNP 239
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.424
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,135,170
Number of extensions: 54235
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 41
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)