Query 023071
Match_columns 287
No_of_seqs 201 out of 1439
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0385 Predicted Na+-dependen 100.0 5.7E-31 1.2E-35 244.7 24.4 195 82-283 15-209 (319)
2 TIGR00832 acr3 arsenical-resis 100.0 9.6E-30 2.1E-34 240.0 23.1 197 80-277 10-220 (328)
3 PF13593 DUF4137: SBF-like CPA 100.0 4.9E-29 1.1E-33 233.8 22.5 193 80-278 1-198 (313)
4 PF01758 SBF: Sodium Bile acid 99.9 1.5E-26 3.3E-31 201.7 18.0 167 111-282 2-174 (187)
5 TIGR00841 bass bile acid trans 99.9 4.6E-25 1E-29 204.6 20.6 164 113-281 14-179 (286)
6 COG0798 ACR3 Arsenite efflux p 99.9 1.8E-22 3.9E-27 187.8 22.1 217 63-285 5-233 (342)
7 TIGR00946 2a69 he Auxin Efflux 99.6 3E-14 6.4E-19 133.8 16.9 145 72-220 174-320 (321)
8 KOG4821 Predicted Na+-dependen 99.6 5.2E-16 1.1E-20 136.3 4.6 195 66-260 9-221 (287)
9 KOG2718 Na+-bile acid cotransp 99.6 4.9E-15 1.1E-19 141.0 11.0 192 84-280 90-282 (371)
10 PRK09903 putative transporter 99.5 1.8E-13 3.8E-18 128.4 15.8 144 71-220 165-310 (314)
11 COG0679 Predicted permeases [G 99.4 5.2E-12 1.1E-16 118.6 16.8 150 69-221 157-308 (311)
12 PF03547 Mem_trans: Membrane t 99.3 1.7E-10 3.7E-15 110.2 17.1 140 76-217 240-385 (385)
13 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.0031 6.8E-08 59.2 15.2 173 82-269 15-199 (314)
14 TIGR00932 2a37 transporter, mo 97.4 0.054 1.2E-06 49.5 20.6 143 72-220 9-159 (273)
15 PF05145 AmoA: Putative ammoni 97.3 0.028 6E-07 53.3 18.6 135 82-222 2-136 (318)
16 TIGR03082 Gneg_AbrB_dup membra 97.3 0.025 5.4E-07 48.0 16.2 133 81-219 23-155 (156)
17 COG3180 AbrB Putative ammonia 97.0 0.11 2.4E-06 49.8 18.9 101 118-222 69-169 (352)
18 PF03601 Cons_hypoth698: Conse 96.8 0.051 1.1E-06 51.2 14.9 136 81-220 28-169 (305)
19 PRK03562 glutathione-regulated 96.6 0.29 6.2E-06 50.5 20.4 133 73-213 23-164 (621)
20 PRK05326 potassium/proton anti 96.6 0.38 8.3E-06 48.8 20.9 177 72-258 23-211 (562)
21 COG2855 Predicted membrane pro 96.6 0.31 6.8E-06 46.4 18.3 137 81-221 39-179 (334)
22 TIGR00793 kdgT 2-keto-3-deoxyg 96.5 0.029 6.3E-07 52.6 10.5 174 82-270 15-200 (314)
23 PRK03659 glutathione-regulated 96.4 0.63 1.4E-05 47.8 20.7 132 74-213 24-164 (601)
24 PRK10669 putative cation:proto 96.3 0.66 1.4E-05 47.0 20.5 139 73-216 24-168 (558)
25 TIGR00844 c_cpa1 na(+)/h(+) an 96.1 0.48 1E-05 50.1 18.4 51 83-133 42-99 (810)
26 PRK12460 2-keto-3-deoxyglucona 96.0 0.074 1.6E-06 50.2 10.9 173 82-270 15-195 (312)
27 PF05145 AmoA: Putative ammoni 95.8 0.68 1.5E-05 43.8 16.6 102 116-221 213-314 (318)
28 TIGR00659 conserved hypothetic 95.8 0.33 7.2E-06 43.9 13.6 90 128-220 79-168 (226)
29 COG0475 KefB Kef-type K+ trans 95.8 1.2 2.6E-05 43.5 18.5 170 73-249 24-203 (397)
30 PF04172 LrgB: LrgB-like famil 95.7 0.29 6.4E-06 43.9 13.1 89 129-220 70-158 (215)
31 TIGR00831 a_cpa1 Na+/H+ antipo 95.7 2.2 4.7E-05 43.2 20.6 163 80-252 23-192 (525)
32 COG1346 LrgB Putative effector 95.6 1.5 3.2E-05 39.8 16.7 90 128-220 82-171 (230)
33 PRK04288 antiholin-like protei 95.5 0.48 1E-05 43.0 13.8 88 130-220 87-174 (232)
34 TIGR00698 conserved hypothetic 95.2 0.83 1.8E-05 43.7 14.9 137 81-221 33-176 (335)
35 PRK10711 hypothetical protein; 95.0 0.71 1.5E-05 41.9 13.1 88 130-220 82-169 (231)
36 PRK12460 2-keto-3-deoxyglucona 95.0 0.51 1.1E-05 44.6 12.5 133 82-221 169-304 (312)
37 KOG2722 Predicted membrane pro 94.8 0.04 8.6E-07 53.0 4.7 144 74-220 242-403 (408)
38 COG3180 AbrB Putative ammonia 93.2 6.3 0.00014 38.0 16.2 107 111-221 241-347 (352)
39 PF05684 DUF819: Protein of un 92.8 7.5 0.00016 37.8 16.4 146 69-220 17-168 (378)
40 TIGR00840 b_cpa1 sodium/hydrog 92.7 13 0.00028 38.0 19.6 135 83-220 39-188 (559)
41 PRK03562 glutathione-regulated 91.8 6.2 0.00013 40.8 15.3 104 109-220 270-379 (621)
42 PRK03659 glutathione-regulated 91.8 6.4 0.00014 40.5 15.3 105 109-220 267-376 (601)
43 PF03956 DUF340: Membrane prot 91.5 9.3 0.0002 33.6 17.0 129 84-220 3-138 (191)
44 PLN03159 cation/H(+) antiporte 90.3 29 0.00063 37.3 20.7 106 108-219 107-224 (832)
45 PF00999 Na_H_Exchanger: Sodiu 89.5 0.029 6.2E-07 53.4 -3.9 167 80-254 21-198 (380)
46 COG0025 NhaP NhaP-type Na+/H+ 88.5 27 0.00059 34.4 21.8 172 109-284 63-240 (429)
47 PRK10669 putative cation:proto 88.1 18 0.00039 36.7 15.0 107 110-220 279-387 (558)
48 PF03616 Glt_symporter: Sodium 88.0 27 0.00058 33.8 19.2 187 68-258 20-242 (368)
49 KOG2718 Na+-bile acid cotransp 87.1 0.061 1.3E-06 52.0 -3.3 99 115-214 52-151 (371)
50 PRK05274 2-keto-3-deoxyglucona 86.1 25 0.00054 33.6 13.8 163 83-261 18-195 (326)
51 PRK05274 2-keto-3-deoxyglucona 85.9 3.3 7.1E-05 39.5 7.8 130 84-221 178-312 (326)
52 COG3329 Predicted permease [Ge 79.1 6.9 0.00015 37.2 6.8 84 79-164 216-303 (372)
53 TIGR03802 Asp_Ala_antiprt aspa 78.9 52 0.0011 33.7 13.8 97 116-217 457-559 (562)
54 TIGR00210 gltS sodium--glutama 77.8 54 0.0012 32.2 13.0 187 68-258 20-240 (398)
55 COG0475 KefB Kef-type K+ trans 75.9 81 0.0018 30.7 14.4 81 108-193 273-354 (397)
56 PRK03818 putative transporter; 73.5 82 0.0018 32.2 13.5 102 117-220 443-549 (552)
57 TIGR00698 conserved hypothetic 73.0 21 0.00046 34.2 8.6 77 80-159 252-329 (335)
58 TIGR01625 YidE_YbjL_dupl AspT/ 73.0 57 0.0012 27.7 10.4 106 85-192 27-139 (154)
59 PLN03159 cation/H(+) antiporte 71.9 89 0.0019 33.6 13.9 107 109-220 324-436 (832)
60 PF03812 KdgT: 2-keto-3-deoxyg 71.1 31 0.00067 32.8 9.0 27 194-220 283-309 (314)
61 COG4651 RosB Kef-type K+ trans 68.2 1.2E+02 0.0025 29.3 14.0 137 79-220 30-175 (408)
62 TIGR00793 kdgT 2-keto-3-deoxyg 67.3 58 0.0013 30.9 9.9 20 111-130 201-220 (314)
63 PRK09903 putative transporter 66.1 1.1E+02 0.0025 28.4 19.0 110 108-221 40-151 (314)
64 TIGR03802 Asp_Ala_antiprt aspa 65.2 1.3E+02 0.0029 30.8 13.0 72 110-182 61-133 (562)
65 PF03977 OAD_beta: Na+-transpo 64.1 1.2E+02 0.0026 29.3 11.5 104 111-221 70-174 (360)
66 TIGR03136 malonate_biotin Na+- 62.1 1.6E+02 0.0035 28.8 12.6 104 111-221 106-211 (399)
67 PRK03818 putative transporter; 62.0 1.9E+02 0.0042 29.6 15.1 74 109-183 63-137 (552)
68 PRK04972 putative transporter; 59.7 2.1E+02 0.0046 29.3 14.6 73 111-184 64-137 (558)
69 TIGR00844 c_cpa1 na(+)/h(+) an 59.3 1.1E+02 0.0023 33.0 11.2 84 110-194 298-384 (810)
70 PRK05326 potassium/proton anti 58.7 1.1E+02 0.0024 31.1 11.1 106 110-220 277-390 (562)
71 PF06826 Asp-Al_Ex: Predicted 54.7 1.4E+02 0.003 25.7 13.7 75 108-184 55-132 (169)
72 PRK04972 putative transporter; 54.3 2.6E+02 0.0056 28.7 13.3 96 118-218 454-555 (558)
73 PF04346 EutH: Ethanolamine ut 54.3 2.1E+02 0.0046 27.7 14.1 31 228-258 162-192 (354)
74 COG0786 GltS Na+/glutamate sym 47.7 2.9E+02 0.0063 27.3 18.6 187 68-258 22-243 (404)
75 COG2855 Predicted membrane pro 47.7 1.2E+02 0.0025 29.2 8.5 55 81-135 255-310 (334)
76 COG5505 Predicted integral mem 45.7 2.9E+02 0.0062 26.6 11.2 110 108-220 61-172 (384)
77 PF03601 Cons_hypoth698: Conse 43.3 36 0.00079 32.1 4.4 52 81-132 245-297 (305)
78 PF03547 Mem_trans: Membrane t 43.0 2.9E+02 0.0063 26.0 10.9 108 83-195 10-121 (385)
79 PF05982 DUF897: Domain of unk 40.8 3.4E+02 0.0073 26.1 12.2 91 69-166 167-265 (327)
80 PRK15060 L-dehydroascorbate tr 40.6 3.8E+02 0.0082 26.6 17.7 71 188-260 347-417 (425)
81 TIGR00946 2a69 he Auxin Efflux 39.5 3.1E+02 0.0068 25.4 15.5 68 108-178 42-110 (321)
82 TIGR00832 acr3 arsenical-resis 37.8 1.5E+02 0.0032 28.1 7.7 65 143-208 252-316 (328)
83 COG3263 NhaP-type Na+/H+ and K 37.6 4.6E+02 0.0099 26.7 15.1 191 80-285 32-235 (574)
84 COG1970 MscL Large-conductance 34.4 2.6E+02 0.0056 23.2 7.5 87 68-160 2-93 (130)
85 PF05684 DUF819: Protein of un 33.8 4.5E+02 0.0098 25.5 13.7 106 89-202 248-354 (378)
86 TIGR00783 ccs citrate carrier 32.8 3.3E+02 0.0072 26.3 9.2 86 80-167 205-296 (347)
87 PF00999 Na_H_Exchanger: Sodiu 32.7 27 0.00058 33.0 1.8 85 79-164 234-320 (380)
88 TIGR00210 gltS sodium--glutama 31.0 3.6E+02 0.0079 26.4 9.3 111 81-194 247-367 (398)
89 COG0679 Predicted permeases [G 26.6 5.3E+02 0.011 24.0 18.5 116 82-203 12-131 (311)
90 PF13955 Fst_toxin: Toxin Fst, 25.7 1.2E+02 0.0026 17.2 2.9 16 240-255 2-17 (21)
91 COG0385 Predicted Na+-dependen 25.2 6.1E+02 0.013 24.2 11.5 47 147-194 233-279 (319)
92 PF03390 2HCT: 2-hydroxycarbox 24.6 5.3E+02 0.011 25.6 9.1 58 108-167 305-363 (414)
93 PRK00293 dipZ thiol:disulfide 24.5 7.8E+02 0.017 25.2 15.3 44 237-282 333-377 (571)
94 TIGR01109 Na_pump_decarbB sodi 23.9 6.7E+02 0.014 24.3 9.8 104 111-221 64-174 (354)
95 TIGR00659 conserved hypothetic 22.6 5.8E+02 0.013 23.1 14.9 67 151-219 158-224 (226)
96 PF11120 DUF2636: Protein of u 22.3 1.9E+02 0.004 21.0 4.1 31 231-261 3-33 (62)
97 KOG1650 Predicted K+/H+-antipo 20.9 5.6E+02 0.012 27.5 9.1 107 109-220 312-421 (769)
98 PF04367 DUF502: Protein of un 20.5 72 0.0016 25.1 1.9 40 239-279 2-41 (108)
99 TIGR00927 2A1904 K+-dependent 20.5 3.1E+02 0.0067 30.4 7.0 92 142-237 937-1041(1096)
100 PF03616 Glt_symporter: Sodium 20.4 7.8E+02 0.017 23.7 9.9 109 81-192 249-367 (368)
101 PRK01663 C4-dicarboxylate tran 20.3 2.8E+02 0.006 27.4 6.4 39 82-120 13-57 (428)
No 1
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=100.00 E-value=5.7e-31 Score=244.68 Aligned_cols=195 Identities=24% Similarity=0.336 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~ 161 (287)
+++++++...++...|+...+.+.+ .++.+.++||.+|++++.+|+++..+|||.++++++.||++||++++++++.+
T Consensus 15 ~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~ 92 (319)
T COG0385 15 FLLWVVLLAAIAPIFPETFGWLGSA--IPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLF 92 (319)
T ss_pred HHHHHHHHHHHHHhccccchhhhHH--HHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566667777888888888887764 36788899999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHHHHHHHHH
Q 023071 162 LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLT 241 (287)
Q Consensus 162 ~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l~~~L~~~ 241 (287)
.+|++++.|+++++|||+|+.|++ ||+++|||++++++++.+||+++++++|+++.++. +..+++|.+++++++++.
T Consensus 93 ~l~~~l~~Gl~ll~~~Pggv~S~~-~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~--~~~v~~~~~~m~~~i~~~ 169 (319)
T COG0385 93 PLPPELAVGLLLLGCCPGGVASNA-MTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLA--GGGVPVDVGGMFLSILLQ 169 (319)
T ss_pred CCCHHHHHhHHheeeCCCchhHHH-HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCchHHHHHHHHHH
Confidence 999999999999999999999985 99999999999999999999999999999999998 467899999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHHHHh
Q 023071 242 LLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRL 283 (287)
Q Consensus 242 vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~~ 283 (287)
+++|+++|+++|++.+++.+ ..++..++++..++..++..
T Consensus 170 vllP~~LG~~~r~~~~~~~~--~~~~~l~~vs~~~illIv~~ 209 (319)
T COG0385 170 VLLPFVLGQLLRPLLPKWVE--RLKKALPPVSVLSILLIVYA 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhcchhhHHHHHHHHHH
Confidence 99999999999999998776 56677777777777766653
No 2
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=99.97 E-value=9.6e-30 Score=240.02 Aligned_cols=197 Identities=18% Similarity=0.200 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHhhcCccccchhhhc---h-hH--HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCLADKYQ---L-SK--FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF 153 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~~~~~~---l-~~--~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pll 153 (287)
++++++++.|++.|+..|....+.+... + .+ +.+..+||.+|++++.+|+++.+||||.+..+++.|++++|++
T Consensus 10 ~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pll 89 (328)
T TIGR00832 10 LWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFL 89 (328)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 4566888889999999999988776431 1 11 2344689999999999999999999999999999999999999
Q ss_pred HHHHHHHh-cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------Cc
Q 023071 154 SKLILQVQ-LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAG------VG 226 (287)
Q Consensus 154 a~~l~~l~-~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~------~~ 226 (287)
+|++++++ +.+++++.|+++++|||||.+|++ ||+++|||.++++++|.+||+++++++|+++.++.+.. +.
T Consensus 90 a~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v-~T~lAkGnvalsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~ 168 (328)
T TIGR00832 90 MFLLAWLFLRDLFEYIAGLILLGLARCIAMVFV-WNQLAKGDPEYTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTV 168 (328)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccce
Confidence 99999975 889999999999999999999996 99999999999999999999999999999999887521 35
Q ss_pred eecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhc-cccchhHHHHH
Q 023071 227 ISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIR-PQNFLFFLFSM 277 (287)
Q Consensus 227 v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~-~~~~~~s~i~~ 277 (287)
+++|+.+++.+++.++++|+++|+++|++.+++..+++.+ |.++.++.++.
T Consensus 169 v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (328)
T TIGR00832 169 ITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL 220 (328)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH
Confidence 7899999999999999999999999999999765222554 56555554443
No 3
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=99.97 E-value=4.9e-29 Score=233.83 Aligned_cols=193 Identities=31% Similarity=0.541 Sum_probs=172.6
Q ss_pred hHHHHHHHHHHHHHhhcCccccchhhhc---hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCLADKYQ---LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~~~~~~---l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
||++++++.++++|+.+|.++...+..+ ..++.++++||..|++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus 1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~ 80 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG 80 (313)
T ss_pred CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999988544431 4566799999999999999999999999999999999999999999999
Q ss_pred HHHHh--cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHH
Q 023071 157 ILQVQ--LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQL 234 (287)
Q Consensus 157 l~~l~--~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l 234 (287)
+.+++ ..+++++.|+++++|+||+..|+++||+++|||.+.|+..++++|+++++++|+++.++.+ ++..++|+.++
T Consensus 81 ~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l~-~~~~~~~~~~~ 159 (313)
T PF13593_consen 81 LSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLLG-GSSVSIDYASV 159 (313)
T ss_pred HHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHhc-CCcCCCCHHHH
Confidence 99887 4688999999999999999999988999999999999999999999999999999999984 45788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHH
Q 023071 235 FKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMS 278 (287)
Q Consensus 235 ~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~ 278 (287)
+.++...+++|+++|+++|++.+++ .+|+++++++++-+
T Consensus 160 ~~~L~~~vllP~~~Gq~~r~~~~~~-----~~~~~~~~~~~~~~ 198 (313)
T PF13593_consen 160 LIKLVLTVLLPLVLGQLLRRWVPKW-----VARHKKPLSLLSQL 198 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 9999999999999999999998874 44566666655443
No 4
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=99.95 E-value=1.5e-26 Score=201.71 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=140.0
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH-HHhcCChhHHHHHHHhccCchhhhHHHHHHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH 189 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~ 189 (287)
+.++.+||.+|++++.+|+++..|||+.++.+++.|++++|+++|+++ ..+..+++++.|+++++||||+..+++ ||+
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~-~t~ 80 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNV-FTY 80 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHH-HHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHH-HHH
Confidence 457889999999999999999999999999999999999999999999 778889999999999999999999997 999
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee---cCHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcchhhh
Q 023071 190 LAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS---VPTKQLFKSLVLTLLIPLILGKVLRESIT--GECLNIF 264 (287)
Q Consensus 190 ~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~---i~~~~l~~~L~~~vllPl~lG~llr~~~~--~~~~~~~ 264 (287)
++|||.++++.++.++++++++++|+++.++.+ ...+ +++.+++.+++..+++|+++|+++|++.| +..+ .
T Consensus 81 l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~~--~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~--~ 156 (187)
T PF01758_consen 81 LAGGDVALSVSLTLISTLLAPFLMPLLLYLLSG--GSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFAR--R 156 (187)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH---GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-H--H
T ss_pred HhCCCcccccceeeHHHHHHHHHHHHHHHHHhc--cccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHH--H
Confidence 999999999999999999999999999999874 3344 44899999999999999999999999999 5555 5
Q ss_pred hccccchhHHHHHHHHHH
Q 023071 265 IRPQNFLFFLFSMSYVSR 282 (287)
Q Consensus 265 ~~~~~~~~s~i~~~~v~~ 282 (287)
.++..++++.+++..++.
T Consensus 157 ~~~~~~~~s~~~l~~~i~ 174 (187)
T PF01758_consen 157 LKPFLKPLSFILLLLIIV 174 (187)
T ss_dssp HHCCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 677777777776665543
No 5
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=99.94 E-value=4.6e-25 Score=204.55 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=149.9
Q ss_pred HHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcC
Q 023071 113 TFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192 (287)
Q Consensus 113 l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~ag 192 (287)
++++||.+|++++.+|+++.+++|+.+..+++.|++++|++++.+++.++++++++.|+++++|||++.++++ ||+++|
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v-~t~~~~ 92 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNV-FTYLLK 92 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHH-HHHHhC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999996 999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071 193 GNSALALAMTIISNLLGIMIVPFSISKFIAA--GVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF 270 (287)
Q Consensus 193 Gn~ala~~~~~lstlls~~~iPl~l~ll~~~--~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~ 270 (287)
||.++++.++.++|+++++++|+++.++.+. +..+++|+.+++.+ +.++++|+++|+++|++.|+..+ +.++ .+
T Consensus 93 gn~~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~~~--~~~~-~~ 168 (286)
T TIGR00841 93 GDMALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQIAK--IILK-VG 168 (286)
T ss_pred CCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH--HHHh-Cc
Confidence 9999999999999999999999999998752 23566999999999 99999999999999999988766 5666 67
Q ss_pred hhHHHHHHHHH
Q 023071 271 LFFLFSMSYVS 281 (287)
Q Consensus 271 ~~s~i~~~~v~ 281 (287)
.++.+.+.+++
T Consensus 169 ~~s~~~l~liv 179 (286)
T TIGR00841 169 LISVFLLSVII 179 (286)
T ss_pred hHHHHHHHHHH
Confidence 77777665554
No 6
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.8e-22 Score=187.77 Aligned_cols=217 Identities=23% Similarity=0.258 Sum_probs=177.9
Q ss_pred chhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhch------hHHHHHHHHHHhcCCCChhHHHHhhhch
Q 023071 63 SSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQL------SKFSTFAIFIVSGLTLRSGEIGAAAEAW 136 (287)
Q Consensus 63 ~~~~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l------~~~~l~lim~~~Gl~l~~~~l~~~~~~~ 136 (287)
+.|.+++.++... .|..++++.|+.+|..+|+..+.++..+. ....+.+||+.+-++++.+++++..+++
T Consensus 5 ~~k~l~~~dk~l~----~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 5 EKKKLSFLDKYLT----LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred HhhhhhHHHHHHH----HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 4455656555444 23569999999999999997776663321 2345667889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 023071 137 PVGIFGLFSILLFTPYFSKLILQVQLQ-PQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPF 215 (287)
Q Consensus 137 ~~~l~~~~~~~vl~Plla~~l~~l~~l-~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl 215 (287)
|.+..++..|+++.|++++++++++.. .|++.+|+++.+..||..++.+ |+++++||.++++..+.++.++++++.|.
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMViv-w~~La~Gd~~~tlv~Va~n~l~qiv~y~~ 159 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIV-WSGLAKGDRELTLVLVAFNSLLQIVLYAP 159 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHH-HHhhccCcHhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998654 4789999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHhhcCCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhc-ccc---chhHHHHHHHHH-Hhhc
Q 023071 216 SISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIR-PQN---FLFFLFSMSYVS-RLFS 285 (287)
Q Consensus 216 ~l~ll~~~~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~-~~~---~~~s~i~~~~v~-~~~~ 285 (287)
+...+.+. ..++++++++++++++.+.+|+++|++.|++..++..++|.+ |.+ .+++.+++.+.+ .+|+
T Consensus 160 ~~~~~l~v-~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~ 233 (342)
T COG0798 160 LGKFFLGV-ISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFA 233 (342)
T ss_pred HHHHHHhh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 99999864 368999999999999999999999999999876655433433 333 455556655543 3443
No 7
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.60 E-value=3e-14 Score=133.81 Aligned_cols=145 Identities=18% Similarity=0.088 Sum_probs=124.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcCccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071 72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF 149 (287)
Q Consensus 72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl 149 (287)
+..+.+.+||.++++++|+++....-..+.+.+ ..+ ++..+.|++|+..|++++.++.+ ++++........|+++
T Consensus 174 ~~~~~~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil 250 (321)
T TIGR00946 174 FVWKKLIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLV 250 (321)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHH
Confidence 334445578889999999998887644444333 333 78899999999999999887765 3456677788899999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 150 ~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
.|++++.+...++++++.....++++++|++..+++ +++++|+|.++++..+.+||++|++++|+|+.++
T Consensus 251 ~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l~ 320 (321)
T TIGR00946 251 QPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAV-LATEYEVDVELASTAVTLSTVLSLISLPLFIILL 320 (321)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999996 9999999999999999999999999999999875
No 8
>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]
Probab=99.60 E-value=5.2e-16 Score=136.27 Aligned_cols=195 Identities=28% Similarity=0.453 Sum_probs=157.2
Q ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCcccc----chhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHH
Q 023071 66 GLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGC----LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF 141 (287)
Q Consensus 66 ~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~----~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~ 141 (287)
+.-|.+|+.++.+++|+..++.+.+..+.+.|+.+. ..++|+++++.+..+|+..|++++.|++..+.++|+++++
T Consensus 9 r~i~~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLF 88 (287)
T KOG4821|consen 9 RKIWAHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLF 88 (287)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHH
Confidence 445778999999999999999999999999988764 3345667888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc---CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHH
Q 023071 142 GLFSILLFTPYFSKLILQVQL---QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALAL-AMTIISNLLGIMIVPFSI 217 (287)
Q Consensus 142 ~~~~~~vl~Plla~~l~~l~~---l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~-~~~~lstlls~~~iPl~l 217 (287)
+++..+.+.|-..|++..... .|.++..|+.+.+|||++++|+|++|..+|||.+.+. ....++.+++....|-..
T Consensus 89 ilI~~Ll~tPs~~~Lf~~~~~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~ 168 (287)
T KOG4821|consen 89 ILILSLLITPSIVYLFCCAVKAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALV 168 (287)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999887643 4568999999999999999999999999999984333 233445666666666666
Q ss_pred HHHhhc----------CCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023071 218 SKFIAA----------GVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGEC 260 (287)
Q Consensus 218 ~ll~~~----------~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~ 260 (287)
..++.. |.++..-+..++.+....+++|...|...+...++-+
T Consensus 169 q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 221 (287)
T KOG4821|consen 169 QMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGT 221 (287)
T ss_pred HHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCce
Confidence 555421 2223334455778888899999999999998777654
No 9
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=99.60 E-value=4.9e-15 Score=141.00 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhhcC-ccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023071 84 LALIGGVAFGFANP-SLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQL 162 (287)
Q Consensus 84 lail~gi~lg~~~P-~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~ 162 (287)
.....+-......| ....|+..- .........|++.|++++.+++++..++|.....+++.|++++|+.++.+.+.+.
T Consensus 90 ~~~~~~~v~~~~~~~~~~t~l~~~-~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~ 168 (371)
T KOG2718|consen 90 LLVFLLKVLFLLDPLLAFTWLVTG-CFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLL 168 (371)
T ss_pred HHHHHHHHHhhcCCcccceEEEeC-ccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhh
Confidence 33333334444444 455554432 3344566788999999999999999999999999999999999999999999888
Q ss_pred CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHHHHHHHHHH
Q 023071 163 QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTL 242 (287)
Q Consensus 163 l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l~~~L~~~v 242 (287)
++...+.|.+++.|++++..++..++..-+||..++..+|.++|+.+++++|++-.++. +..+..|...+..+....+
T Consensus 169 lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~stv~avi~~pl~s~~l~--~~l~~~d~~~v~~s~~~vv 246 (371)
T KOG2718|consen 169 LPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTISTVLAVILTPLLSILLG--RALIPVDALGVIASILQVV 246 (371)
T ss_pred CCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHHHHHHHHHHHHHHhhc--hhhhcccchhhhhhhhHHh
Confidence 88877566666665555555444355555999999999999999999999999998885 4556677777777889999
Q ss_pred HHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHH
Q 023071 243 LIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYV 280 (287)
Q Consensus 243 llPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v 280 (287)
.+|+.+|.++|+++|++.+ .+++..+++++......
T Consensus 247 ~~pl~lG~lL~~~~~k~t~--~i~~~~~~vsv~~t~l~ 282 (371)
T KOG2718|consen 247 GLPLALGLLLNKWFPKRTV--AIEPGLPPVSVCLTILC 282 (371)
T ss_pred HHHHHHHHHhcccCcccee--eeecCCCchHHHhhhhh
Confidence 9999999999999999988 79999999887765543
No 10
>PRK09903 putative transporter YfdV; Provisional
Probab=99.54 E-value=1.8e-13 Score=128.42 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=120.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhh-hc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071 71 KPLLKIAADNFLPLALIGGVAFGFANPSLGCLADK-YQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL 148 (287)
Q Consensus 71 ~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~-~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v 148 (287)
|.+++ +.+||.++++++|+++....-..+.+.++ .+ +++.++|++|+..|.+++..+++. +++ .....+.|++
T Consensus 165 ~~l~~-~~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~---~~~-~~~~~~~Kli 239 (314)
T PRK09903 165 SALIS-AAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEF---SAE-IAYNTFLKLI 239 (314)
T ss_pred HHHHH-HHhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---cHH-HHHHHHHHHH
Confidence 44554 45789999999999988765333333333 23 788999999999999998876542 233 3467788999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 149 FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 149 l~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
+.|++++.+...++++++....+++.+++|++.++++ +++++|+|.++++..+.+||++|.+++|+|++++
T Consensus 240 ~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i-~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 240 LMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII-IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888999999999999999999999997 9999999999999999999999999999999876
No 11
>COG0679 Predicted permeases [General function prediction only]
Probab=99.43 E-value=5.2e-12 Score=118.61 Aligned_cols=150 Identities=26% Similarity=0.313 Sum_probs=124.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHH
Q 023071 69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSI 146 (287)
Q Consensus 69 ~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~ 146 (287)
..++..+-+.+||.+++.+.|.++....-..+...+ ..+ ++..+.|++|+..|++++.++.++ .+++........|
T Consensus 157 ~~~~~~~~~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~k 234 (311)
T COG0679 157 SLLSVLKKLLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLK 234 (311)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHH
Confidence 445555667789999999999998875533333333 222 788899999999999999965553 2345555566679
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 147 LLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 147 ~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
++++|++++.+.++++++++....+++..++|++.++++ +++++++|.+++...+.+||+++.+++|.+...+.
T Consensus 235 ll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v-~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 235 LLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYV-LARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHH-HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988889999999999999996 99999999999999999999999999999988774
No 12
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.27 E-value=1.7e-10 Score=110.23 Aligned_cols=140 Identities=24% Similarity=0.276 Sum_probs=117.1
Q ss_pred HHHhhHHHHHHHHHHHHHhhcCccc----cchhhh-c-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071 76 IAADNFLPLALIGGVAFGFANPSLG----CLADKY-Q-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF 149 (287)
Q Consensus 76 ~l~~n~l~lail~gi~lg~~~P~~~----~~~~~~-~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl 149 (287)
...+||..++.++|+++++..+... .+.... + ++...+|+.|+.+|.++.....+... +++......+.++++
T Consensus 240 ~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii 318 (385)
T PF03547_consen 240 KLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLII 318 (385)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHH
Confidence 3446888899999999999876655 444432 2 77889999999999999876544332 333444568899999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 150 TPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSI 217 (287)
Q Consensus 150 ~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l 217 (287)
+|++++.+...++++++....+++.+++|++..+.+ ++.+++.|.+.+...+..+++++++++|+|+
T Consensus 319 ~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~-~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 385 (385)
T PF03547_consen 319 LPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFV-IASLYGLDEEEASSIVFWSTLLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999998899999999999999996 9999999999999999999999999999984
No 13
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.58 E-value=0.0031 Score=59.21 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhc--h---hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQ--L---SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~--l---~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
+++=+++|.++.-++|+.......++ + ....+.+.++++|.+++.++..+.+||-.. .++.|+++-=+++++
T Consensus 15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~---ll~~K~~~~~~lgl~ 91 (314)
T PF03812_consen 15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGV---LLLVKFIIGALLGLL 91 (314)
T ss_pred eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhH---HHHHHHHHHHHHHHH
Confidence 55778889999999998866433332 1 123455678999999999999998875433 457899999999999
Q ss_pred HHHHhcCChh-----H-HHHHHHhccC-chhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceec
Q 023071 157 ILQVQLQPQE-----F-VTGLALFSCM-PTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISV 229 (287)
Q Consensus 157 l~~l~~l~~~-----~-~~Glvl~~a~-P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i 229 (287)
+.++++.++. + ...+.+.+++ -+-..-+..++++||-+.+-++ ...+ +...-|+.-.+.+|.....++
T Consensus 92 ~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA-~~i~----sl~~GPf~tMl~LG~sG~a~i 166 (314)
T PF03812_consen 92 VGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA-FSIL----SLNDGPFFTMLALGASGLANI 166 (314)
T ss_pred HHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH-HHHH----HhhhhHHHHHHHHhhccccCC
Confidence 9999876642 1 1122233332 2222223346777865555443 3333 344455555555554445678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhcccc
Q 023071 230 PTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQN 269 (287)
Q Consensus 230 ~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~ 269 (287)
|+..+ +-.++|+++|+++-..-++..+ +.++..
T Consensus 167 p~~~l-----v~~llP~iiG~iLGNLD~~~r~--fl~~~~ 199 (314)
T PF03812_consen 167 PWMSL-----VAALLPIIIGMILGNLDPDFRK--FLAPGV 199 (314)
T ss_pred CHHHH-----HHHHHHHHHHHHHhcCCHHHHH--HHhcCC
Confidence 86443 4677899999999877666554 555533
No 14
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.37 E-value=0.054 Score=49.49 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=77.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHH
Q 023071 72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFT 150 (287)
Q Consensus 72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~ 150 (287)
.+.+.++.+..+.-++.|+++|-..-+.-...+... +..+.....+|..|++++.+++++..| .........++ .
T Consensus 9 ~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~---~~~~~~~~~~~-~ 84 (273)
T TIGR00932 9 PLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRK---AAFGVGVLQVL-V 84 (273)
T ss_pred HHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH---HHHHHHHHHHH-H
Confidence 344455566677788889888732111100001111 566778889999999999999987543 33322333333 3
Q ss_pred HH--HHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 151 PY--FSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLA--GGN-SALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 151 Pl--la~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~a--gGn-~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
|. +++.....++.+. ....|..+....|.... .+ +.++- +.+ ..+......++.+++.+..-+.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~-~i-l~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~ 159 (273)
T TIGR00932 85 PGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVV-QV-LKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLA 159 (273)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHH-HH-HHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 42 2333455565542 23334444333322222 22 33322 223 34566677788999988876665443
No 15
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.32 E-value=0.028 Score=53.27 Aligned_cols=135 Identities=21% Similarity=0.231 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~ 161 (287)
++-.++..++.+...+....+-.. +.+....++=..+|.+++.+.+.+...++...+...+...+..-+.+|.+.+..
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~--~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 79 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRR--LRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRIS 79 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHH--HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445666666777666444332222 223334444468899999999999888887777777777888888888888887
Q ss_pred cCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023071 162 LQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIA 222 (287)
Q Consensus 162 ~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~ 222 (287)
+.|.. --+++++|++.+.-+++++..|+|...-+....+=-++-++++|+....+.+
T Consensus 80 ~~d~~----TA~~~~~PGg~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 80 GLDRA----TAFFASMPGGLSEMVALAEEYGADTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred CCChh----HHHHHcCCccHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77643 2357899999998888999999999999999999999999999999988764
No 16
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=97.30 E-value=0.025 Score=48.04 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQV 160 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l 160 (287)
|++-.++.+..++......... +..+....--++-...|.+++.+++++..+.+...+...+....+.=..++.+.+.
T Consensus 23 ~llG~mi~~~~~~~~~~~~~~~--P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 23 WLLGPLLAGAVLSLAGGLEITL--PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHHHHHHHHhcCCccCCC--CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666543221111 11122333444557889999999999988877766665666666666677778887
Q ss_pred hcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISK 219 (287)
Q Consensus 161 ~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~l 219 (287)
.+.|..- .+++++|+|...-..+++..|.|...-+....+=.++-.+..|++..+
T Consensus 101 ~~~~~~t----a~La~~PGGl~~m~~~A~~~gad~~~V~~~q~~Rl~~v~~~~P~i~~~ 155 (156)
T TIGR03082 101 TGVDPLT----AFLATSPGGASEMAALAAELGADVAFVAAMQTLRLLFVVLLVPLLARL 155 (156)
T ss_pred HCCCHHH----HHHHhCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777433 257899999987777899999999999999988888888888886653
No 17
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=96.99 E-value=0.11 Score=49.77 Aligned_cols=101 Identities=19% Similarity=0.347 Sum_probs=87.5
Q ss_pred HHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHH
Q 023071 118 IVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSAL 197 (287)
Q Consensus 118 ~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~al 197 (287)
..+|.+++.+++....++|...+...+......=+.+|.+.+.-..|++-+ +.+++|++.+.-+.+++-+|.|.++
T Consensus 69 ~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~~~ 144 (352)
T COG3180 69 IMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTA----FLGSSPGGASAMVSIAQDYGADLRL 144 (352)
T ss_pred HHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh----hHhcCCchHHHHHHHHHHhCCChhH
Confidence 577889999999998888988888888888888888999988765664332 4789999998888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023071 198 ALAMTIISNLLGIMIVPFSISKFIA 222 (287)
Q Consensus 198 a~~~~~lstlls~~~iPl~l~ll~~ 222 (287)
.+.+..+=-+.-..+.|+...++.+
T Consensus 145 VAl~Q~lRvl~Vvl~vplv~~~~~~ 169 (352)
T COG3180 145 VALMQYLRVLFVVLLAPLVSRLFVG 169 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999874
No 18
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.80 E-value=0.051 Score=51.24 Aligned_cols=136 Identities=14% Similarity=0.089 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHh-hcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGF-ANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (287)
Q Consensus 81 ~l~lail~gi~lg~-~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~ 158 (287)
..++++++|++++- ....+..+..... .....+-.....+|.+++..|+.+.- ++.++. .+......=.+++.++
T Consensus 28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G--~~~~~~-~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALG--WKGLLI-IIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhC--ccHHHH-HHHHHHHHHHHHHHHH
Confidence 45699999999984 3322222211111 12344566667899999999998743 333332 3334444445667777
Q ss_pred -HHhcCChhHHHHHHHhccCchhhhHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 159 -QVQLQPQEFVTGLALFSCMPTTLSSGVAL---THLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 159 -~l~~l~~~~~~Glvl~~a~P~a~~s~V~~---t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
+.+++|++.. -++-.+.+=||.++.++. .+.-+-|.++++..+.+-+.++++.+|.+-..+
T Consensus 105 ~r~~~l~~~~~-~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~ava~V~lfg~vam~~~P~l~~~l 169 (305)
T PF03601_consen 105 RRLFGLDRKLA-ILIAAGTSICGASAIAATAPVIKAKEEDVAYAVATVFLFGTVAMFLYPLLGHAL 169 (305)
T ss_pred HHHhCCCHHHH-HHHHhhcccchHHHHHHHcccccCCCCceeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 9999986542 233333444444433322 334456788999999999999999999998775
No 19
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.65 E-value=0.29 Score=50.51 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=73.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcCccccchh---hh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071 73 LLKIAADNFLPLALIGGVAFGFANPSLGCLAD---KY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL 148 (287)
Q Consensus 73 l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~---~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v 148 (287)
+.+.++-...+.-+++|+++| |....+.. .. .+..+.+.++||..|+.++.+++++..| ..+..-..+.+
T Consensus 23 l~~rl~lp~vlgyilaGillG---P~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~---~~~~~g~~qv~ 96 (621)
T PRK03562 23 IAVRLGLGSVLGYLIAGCIIG---PWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRR---SIFGGGALQMV 96 (621)
T ss_pred HHHHhCCChHHHHHHHHHHhC---cccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHHH
Confidence 444444455666677788876 32222211 11 1456777789999999999999986533 33333344555
Q ss_pred HHHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHH
Q 023071 149 FTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNSA---LALAMTIISNLLGIMIV 213 (287)
Q Consensus 149 l~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~a---la~~~~~lstlls~~~i 213 (287)
+.-++++.++..++.+. .+..|..+..+. ++....+ +.++-.-+.+ .+.....+.-++++.++
T Consensus 97 ~~~~~~~~~~~~~g~~~~~al~ig~~la~SS-taiv~~~-L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ll 164 (621)
T PRK03562 97 ACGGLLGLFCMLLGLRWQVALLIGLGLALSS-TAIAMQA-MNERNLMVTQMGRSAFAILLFQDIAAIPLV 164 (621)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHH-HHHhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666553 344455444433 3444554 6665433333 44555566666555433
No 20
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.63 E-value=0.38 Score=48.84 Aligned_cols=177 Identities=13% Similarity=0.029 Sum_probs=83.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcCccccchh--hh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH
Q 023071 72 PLLKIAADNFLPLALIGGVAFGFANPSLGCLAD--KY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL 148 (287)
Q Consensus 72 ~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~--~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v 148 (287)
.+.+.+.-..++.-+++|+++|-..+..-...+ .. .+..+.+++++|..|++++.+++++..+ ..+.......+
T Consensus 23 ~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~---~~~~la~~gv~ 99 (562)
T PRK05326 23 RLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALG---PALSLATLGVL 99 (562)
T ss_pred HHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHH---HHHHHHHHHHH
Confidence 344444445666777888888753322111111 11 2567888899999999999999996553 22222222222
Q ss_pred HHHHH--HHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHH--cC--CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023071 149 FTPYF--SKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL--AG--GNSALALAM---TIISNLLGIMIVPFSISK 219 (287)
Q Consensus 149 l~Pll--a~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~--ag--Gn~ala~~~---~~lstlls~~~iPl~l~l 219 (287)
.|.+ ++...++++.+ +..++++-++.-.+....+ ..-+ .| =|..+...+ ..++..++++++=+.+.+
T Consensus 100 -~t~~~~g~~~~~l~g~~--~~~alllgai~s~Td~a~v-~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ai~l~~~~~~~ 175 (562)
T PRK05326 100 -ITAGLTGLFAHWLLGLD--WLEGLLLGAIVGSTDAAAV-FSLLRGKGLNLKERVASTLEIESGSNDPMAVFLTITLIEL 175 (562)
T ss_pred -HHHHHHHHHHHHHhcCC--HHHHHHHhhhhccCchHHH-HHHHhccCCCcchhHHhHhhhhhhcccHHHHHHHHHHHHH
Confidence 2322 23334455554 2333333333333322222 2222 22 233433333 234556666655554444
Q ss_pred HhhcCCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071 220 FIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITG 258 (287)
Q Consensus 220 l~~~~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~ 258 (287)
..+ +. .+.+. ..+..+...+.+-.++|.+..+....
T Consensus 176 ~~~-~~-~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~ 211 (562)
T PRK05326 176 ITG-GE-TGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQ 211 (562)
T ss_pred HhC-CC-CcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 11 12222 22333444445555555555444433
No 21
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.57 E-value=0.31 Score=46.41 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ 159 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~ 159 (287)
.+.+++++|++++.+...........+ -.+..+.......|.+++..|+.+.= .+.+ ..........=++++.+++
T Consensus 39 al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G--~~~v-~~~~~~l~~t~~~~~~lg~ 115 (334)
T COG2855 39 ALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVG--GSGV-LIIAITLSSTFLFAYFLGK 115 (334)
T ss_pred HHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcC--ccHH-HHHHHHHHHHHHHHHHHHH
Confidence 567999999999944333322222211 23445666667899999999998753 2222 2333344444467788999
Q ss_pred HhcCChhHHHHHHHhccCchhhhHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 160 VQLQPQEFVTGLALFSCMPTTLSSGVALTHL---AGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 160 l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~---agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
.+++|...+. ++-+++.=||.++..+..-. -+-|.+.++..+++-..++.+.+|.+-.++.
T Consensus 116 ~lgld~~~a~-Lia~GssICGasAiaA~~pvika~~~eva~aIa~V~lfgtia~llyP~l~~~l~ 179 (334)
T COG2855 116 LLGLDKKLAL-LIAAGSSICGASAIAATAPVIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLLG 179 (334)
T ss_pred HhCCCHHHHH-HHHccchhhHHHHHHHhCCcCCCCccccceehhhHHHHHHHHHHHHHHHHHHhC
Confidence 9999975533 44455555655554323222 3345778888888888889999999877763
No 22
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.46 E-value=0.029 Score=52.61 Aligned_cols=174 Identities=12% Similarity=0.083 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhc--h-h--HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQ--L-S--KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~--l-~--~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
+++=+++|.++.-++|+.......++ + + ...+.+.++++|.+++.++-.+.++|-.. .+..|+++-=+++++
T Consensus 15 MiVPLllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~---l~~~K~~i~~~~g~~ 91 (314)
T TIGR00793 15 MLVPLFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGT---LVVTKIAVAWVVAAI 91 (314)
T ss_pred eHHHHHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhcce---eeeHHHHHHHHHHHH
Confidence 34456788888888898865433332 1 1 12345568999999999999888875532 345789888889999
Q ss_pred HHHHhcCCh-----hH-HHHHHHhccCc-hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceec
Q 023071 157 ILQVQLQPQ-----EF-VTGLALFSCMP-TTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISV 229 (287)
Q Consensus 157 l~~l~~l~~-----~~-~~Glvl~~a~P-~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i 229 (287)
++++++.++ .. ...+.+.+++- +-..-+..++++||-+.+-++ ....+.- -=|+...+.+|...-.++
T Consensus 92 ~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA-~~i~sl~----~GPf~TMi~LG~sGlA~i 166 (314)
T TIGR00793 92 ASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGA-FVLMSLE----SGPLMTMVILGTAGIASF 166 (314)
T ss_pred HHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhh-hhhhhhc----cCcHHHHHHHhhccCCCC
Confidence 999988665 11 11122222222 111222235888865544433 3333333 335555555554444578
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071 230 PTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF 270 (287)
Q Consensus 230 ~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~ 270 (287)
|+..+ +-.++|+++|+++-..-+++.+ +.++..+
T Consensus 167 p~~~l-----v~~ilPlliG~ilGNLD~~~r~--fl~~~~~ 200 (314)
T TIGR00793 167 EPHVF-----VGAVLPFLVGFALGNLDPELRD--FFSKAVQ 200 (314)
T ss_pred CHHHH-----HHHHHHHHHHHHHhcCCHHHHH--HhccCCC
Confidence 86443 4677899999999877666554 5555433
No 23
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.37 E-value=0.63 Score=47.80 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhcCccccch---hhh-chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHH
Q 023071 74 LKIAADNFLPLALIGGVAFGFANPSLGCLA---DKY-QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLF 149 (287)
Q Consensus 74 ~~~l~~n~l~lail~gi~lg~~~P~~~~~~---~~~-~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl 149 (287)
.+.++-...+.-+++|+++| |....+. +.. .+..+.+.++||..|+.++.+++++..+ ..+..-..+.++
T Consensus 24 ~~rl~~p~ilg~ilaGillG---P~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~---~~~~~g~~~v~~ 97 (601)
T PRK03659 24 AQRLGIGAVLGYLLAGIAIG---PWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRR---SIFGVGAAQVLL 97 (601)
T ss_pred HHHhCCChHHHHHHHHHHhc---cccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 33444455666677788776 3221111 111 1456778889999999999999986433 233333344444
Q ss_pred HHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHH
Q 023071 150 TPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNSA---LALAMTIISNLLGIMIV 213 (287)
Q Consensus 150 ~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~a---la~~~~~lstlls~~~i 213 (287)
.-++...+...++.+. .+..|+. ++.+.++....+ +.++-.-|.+ ++.....+..+.++.++
T Consensus 98 t~~~~~~~~~~~g~~~~~a~~~g~~-la~SSTaiv~~i-L~e~~~~~t~~G~~~l~vll~~Di~~i~ll 164 (601)
T PRK03659 98 SAAVLAGLLMLTDFSWQAAVVGGIG-LAMSSTAMALQL-MREKGMNRSESGQLGFSVLLFQDLAVIPAL 164 (601)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHHHHHHH-HHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555553 2333433 233444555554 6665443443 44445555665444333
No 24
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.33 E-value=0.66 Score=47.03 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=73.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHH
Q 023071 73 LLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP 151 (287)
Q Consensus 73 l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~P 151 (287)
+.+.++....+.-+++|+++|-.........+... +..+.+.++||..|+.++.+++++. ++....+...++++.-
T Consensus 24 l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~---~~~~~~~~~~~~~~~~ 100 (558)
T PRK10669 24 LANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAV---KSIAIPGAIAQIAVAT 100 (558)
T ss_pred HHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 33334445566677888887643222211111111 5667788899999999999999854 2334444555666555
Q ss_pred HHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHH
Q 023071 152 YFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGN---SALALAMTIISNLLGIMIVPFS 216 (287)
Q Consensus 152 lla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn---~ala~~~~~lstlls~~~iPl~ 216 (287)
++++++...++.+. .+..|..+.. ..++....+ +.++-.-| ..++.....+..+.+++++-+.
T Consensus 101 ~~~~~~~~~~~~~~~~al~lg~~ls~-tS~~vv~~~-L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l~~~ 168 (558)
T PRK10669 101 LLGMALSAVLGWSLMTGIVFGLCLST-ASTVVLLRA-LEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLL 168 (558)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHH-HHhcCcccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666542 2233332221 222222222 22222222 2355666677777665555443
No 25
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=96.12 E-value=0.48 Score=50.10 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhcCcc---ccch--hhh--chhHHHHHHHHHHhcCCCChhHHHHhh
Q 023071 83 PLALIGGVAFGFANPSL---GCLA--DKY--QLSKFSTFAIFIVSGLTLRSGEIGAAA 133 (287)
Q Consensus 83 ~lail~gi~lg~~~P~~---~~~~--~~~--~l~~~~l~lim~~~Gl~l~~~~l~~~~ 133 (287)
++.+++|+++|...-.. ..+. +.. .++.+++.+.+|..|+.++.+.+++..
T Consensus 42 ~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~w 99 (810)
T TIGR00844 42 MVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHW 99 (810)
T ss_pred HHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhH
Confidence 47778888877543111 1111 111 145567888999999999999998543
No 26
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=96.03 E-value=0.074 Score=50.20 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhc--hh----HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHH
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQ--LS----KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSK 155 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~--l~----~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~ 155 (287)
+++=+++|.++.-++|+.... ..++ +. ...+.+.++++|.+++.++..+.+++-.. .+..|+++-=++++
T Consensus 15 m~vPl~lga~inTf~P~~l~i-G~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~---l~~~K~~~~~~~g~ 90 (312)
T PRK12460 15 MVVPLLIGALINTFFPQALEI-GGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGV---LTITKLGVAIVIGL 90 (312)
T ss_pred eHHHHHHHHHHHhccCcchhh-CcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhh---hhhHHHHHHHHHHH
Confidence 345567888888889988543 2221 11 12345568999999999999988875432 35679998888999
Q ss_pred HHHHHhcCChhHHH-HHHHhccCc-hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHH
Q 023071 156 LILQVQLQPQEFVT-GLALFSCMP-TTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQ 233 (287)
Q Consensus 156 ~l~~l~~l~~~~~~-Glvl~~a~P-~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~ 233 (287)
+++++++.++..-. .+.+.+++- +-..-+..++++||-+.+ .......+.--+++.+=+ -++...-.++|+.
T Consensus 91 ~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d-~gA~~~~sl~~GPf~tm~----aLga~gLA~ip~~- 164 (312)
T PRK12460 91 LVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDERD-VGAISILSLNDGPFFTML----ALGAAGLANIPIM- 164 (312)
T ss_pred HHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCHhh-hhHHhhhhhccCcHHHHH----HHHHHHHhcCChH-
Confidence 99999887653211 222222222 111222235788854444 444444444444544422 2221112245543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccc
Q 023071 234 LFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNF 270 (287)
Q Consensus 234 l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~ 270 (287)
++ .-+++|+++|++++...++..+ +.++-.+
T Consensus 165 ---~l-v~lilpILiGmilGNld~~~~~--~l~~Gi~ 195 (312)
T PRK12460 165 ---AL-VAALLPLVLGMILGNLDPDMRK--FLTKGGP 195 (312)
T ss_pred ---HH-HHHHHHHHHHHHHhccchhhHH--HHhccce
Confidence 33 3488999999999986665444 4555433
No 27
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.81 E-value=0.68 Score=43.84 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=82.2
Q ss_pred HHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCH
Q 023071 116 IFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195 (287)
Q Consensus 116 im~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ 195 (287)
+=...|.+++.+++++..|.....+...+.-+...=+.++.+.++.+.|. .-.+++.+|+|...-...+...|.|.
T Consensus 213 iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~----~t~~La~aPGGl~eM~l~A~~l~~d~ 288 (318)
T PF05145_consen 213 IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLTGIDF----LTALLATAPGGLAEMALIALALGADV 288 (318)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH----HHHHHHhCCccHHHHHHHHHHcCCCh
Confidence 44688999999999987776666655666666666677888888887763 34567889999977766899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 196 ALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 196 ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
++-+...++=.+.-.++.|++..++.
T Consensus 289 ~~V~~~q~~Rl~~v~~~~p~~~r~~~ 314 (318)
T PF05145_consen 289 AFVAAHQVVRLLFVLLLAPFIARWLR 314 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888775
No 28
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=95.77 E-value=0.33 Score=43.89 Aligned_cols=90 Identities=17% Similarity=0.265 Sum_probs=68.8
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023071 128 EIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNL 207 (287)
Q Consensus 128 ~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstl 207 (287)
+.+...|+++.++.+...--++.-..++.+++.++.+++....+.-= +.=++.+.. .++..|||.++++..++++-+
T Consensus 79 ~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pk-SvTtpiAm~--vs~~iGG~~sLta~~vvitGi 155 (226)
T TIGR00659 79 QLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPK-SVTTPIAMH--VSEMIGGIPAVTAVFVILTGL 155 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhH-HhhHHHHHH--HHHHhCChHHHHHHHHHHHHH
Confidence 33444467787877777766677788899999999998776644322 222333333 699999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023071 208 LGIMIVPFSISKF 220 (287)
Q Consensus 208 ls~~~iPl~l~ll 220 (287)
++.++-|.++.++
T Consensus 156 ~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 156 LGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998886
No 29
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.75 E-value=1.2 Score=43.48 Aligned_cols=170 Identities=17% Similarity=0.193 Sum_probs=89.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHh-hcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHH
Q 023071 73 LLKIAADNFLPLALIGGVAFGF-ANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFT 150 (287)
Q Consensus 73 l~~~l~~n~l~lail~gi~lg~-~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~ 150 (287)
+.+.++-.+.+--++.|+++|- ..-......+..+ ++...+-+.||..|+..+.+++++..|+. ..+...--+..
T Consensus 24 l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~ 100 (397)
T COG0475 24 LFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTA 100 (397)
T ss_pred HHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHH
Confidence 4444545666677888888874 1111111111222 56777888999999999999999766543 22233333334
Q ss_pred H-HHHHHHHH-HhcCCh--hHHHHHHHhccCchhhhHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023071 151 P-YFSKLILQ-VQLQPQ--EFVTGLALFSCMPTTLSSGVALTHLAGGNS---ALALAMTIISNLLGIMIVPFSISKFIAA 223 (287)
Q Consensus 151 P-lla~~l~~-l~~l~~--~~~~Glvl~~a~P~a~~s~V~~t~~agGn~---ala~~~~~lstlls~~~iPl~l~ll~~~ 223 (287)
| .++..... .++.+. ....|.. ++..-++..+-+ +.++-+=+. ........+..+.+.....+...+-.
T Consensus 101 ~~~l~~~~~~~~~g~~~~~al~lg~~-l~~sS~~i~~~i-L~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~-- 176 (397)
T COG0475 101 PFLLGLLLLLGILGLSLIAALFLGAA-LALSSTAIVLKI-LMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAG-- 176 (397)
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHHHHH-HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 4 34322222 355552 3333333 333444455554 666433333 35556666777777777766555432
Q ss_pred CCceecC-HHHHHHHHHHHHHHHHHHH
Q 023071 224 GVGISVP-TKQLFKSLVLTLLIPLILG 249 (287)
Q Consensus 224 ~~~v~i~-~~~l~~~L~~~vllPl~lG 249 (287)
+...+.+ ...+...+.....+=+..|
T Consensus 177 ~g~~~~~~~~~~~~~~~~f~~~~l~~g 203 (397)
T COG0475 177 GGSGSVGFILGLLLAILAFLALLLLLG 203 (397)
T ss_pred CCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2444445555555555555
No 30
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=95.75 E-value=0.29 Score=43.93 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=70.0
Q ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023071 129 IGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLL 208 (287)
Q Consensus 129 l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstll 208 (287)
.+...|+++.++.+....-++.-+..+.+++.++++++....+.-=+ .=++.+.. .++..|||.++++..++++-++
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkS-VTtpiAi~--is~~iGG~~sLta~~VvitGi~ 146 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKS-VTTPIAIE--ISEQIGGIPSLTAVFVVITGIL 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH-hhHHHHHH--HHHHhCChHHHHHHHHHHHhhH
Confidence 34444678888888888777777888899999999988766554332 22333333 6999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 023071 209 GIMIVPFSISKF 220 (287)
Q Consensus 209 s~~~iPl~l~ll 220 (287)
+.+.-|.++.++
T Consensus 147 Ga~~g~~llk~~ 158 (215)
T PF04172_consen 147 GAVLGPPLLKLL 158 (215)
T ss_pred HHHhHHHHHhHc
Confidence 999999999886
No 31
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.68 E-value=2.2 Score=43.15 Aligned_cols=163 Identities=7% Similarity=0.066 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHH--HHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS--KLI 157 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla--~~l 157 (287)
...+.-+++|+++|...-......++-.+..+.++.++|..|.+++.+++++.. +.+.. +..--++.+.+. +..
T Consensus 23 P~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~---~~i~~-la~~~vlit~~~v~~~~ 98 (525)
T TIGR00831 23 PYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENF---RPIAL-IAFLLVVVTTVVVGFSL 98 (525)
T ss_pred CHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHH
Confidence 344566777888885321111112221133467888999999999999998644 44432 222222233322 222
Q ss_pred HHHhcCC--hhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCceecCHH
Q 023071 158 LQVQLQP--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA---MTIISNLLGIMIVPFSISKFIAAGVGISVPTK 232 (287)
Q Consensus 158 ~~l~~l~--~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~---~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~ 232 (287)
.++++.+ ..+..|.++...-|.++.+ ..+..+=+..+... -..++...+++..=+.+.+..+++ +.+..
T Consensus 99 ~~~~~l~~~~alllGails~TDpvav~~---il~~~~~p~rl~~il~gESllND~~alvlf~~~~~~~~~~~---~~~~~ 172 (525)
T TIGR00831 99 NWILGIPLALALILGAVLSPTDAVAVLG---TFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVALGKG---VFDPL 172 (525)
T ss_pred HHHhcccHHHHHHHHHHhCCCCHHHHHH---HHhcCCCCHHHHHHHhhhhhhcchHHHHHHHHHHHHHhcCC---CCcHH
Confidence 2344443 2334444443333333222 23333434444432 256777777766555444443211 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023071 233 QLFKSLVLTLLIPLILGKVL 252 (287)
Q Consensus 233 ~l~~~L~~~vllPl~lG~ll 252 (287)
....+++...+.-.++|.++
T Consensus 173 ~~~~~f~~~~~~gi~vG~~~ 192 (525)
T TIGR00831 173 NAALDFAVVCVGGIAAGLAV 192 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334333433344444443
No 32
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=95.55 E-value=1.5 Score=39.75 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=68.3
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHH
Q 023071 128 EIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNL 207 (287)
Q Consensus 128 ~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstl 207 (287)
+.+...|+|+.++.+.+.--++-=..++++++.++.+++....++= =+.-+..+.. .++..||-.++++..+.++-+
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~~Sl~P-kSvTTpiAm~--vs~~iGGip~ltav~Vi~tGi 158 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELILSLLP-KSVTTPIAME--VSESIGGIPALTAVFVILTGI 158 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhcc-cccccHHHHH--HHHhcCCchHHHHHHHHHHHH
Confidence 3444457888888887776666667889999999999876554432 1222333333 599999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 023071 208 LGIMIVPFSISKF 220 (287)
Q Consensus 208 ls~~~iPl~l~ll 220 (287)
++.++-|.++..+
T Consensus 159 ~Gavlg~~llk~~ 171 (230)
T COG1346 159 LGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999887
No 33
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=95.55 E-value=0.48 Score=43.02 Aligned_cols=88 Identities=9% Similarity=0.068 Sum_probs=69.3
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 023071 130 GAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLG 209 (287)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls 209 (287)
+...|+++.++.+...--++.-+.++.++++++.|++....+.==+ .=+..+.. .++..||+.++++..++++-+++
T Consensus 87 ~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~~~Sl~pKS-VTtPIAm~--is~~iGG~psLtA~~ViitGi~G 163 (232)
T PRK04288 87 DVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAVMASMLPQA-ATTAIALP--VSAGIGGIKEITSFAVIFNAVII 163 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhHh-hhHHHHHH--HHHHhCCcHHHHHHHHHHHHHHH
Confidence 3334678888888888777777888999999999987766544322 22333333 69999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023071 210 IMIVPFSISKF 220 (287)
Q Consensus 210 ~~~iPl~l~ll 220 (287)
.++-|.++.++
T Consensus 164 ai~g~~llk~~ 174 (232)
T PRK04288 164 YALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHc
Confidence 99999999886
No 34
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.20 E-value=0.83 Score=43.73 Aligned_cols=137 Identities=15% Similarity=0.045 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhhc-Cccccchh-hhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGFAN-PSLGCLAD-KYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLI 157 (287)
Q Consensus 81 ~l~lail~gi~lg~~~-P~~~~~~~-~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l 157 (287)
.+++++++|++++-.. +......+ ..+ .....+-.....+|.+++..|+.+.- ++.+..... .....=++++.+
T Consensus 33 ~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G--~~~l~~~~~-~v~~~~~~~~~~ 109 (335)
T TIGR00698 33 ALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVG--PNEIVADTL-ILTSTFFLTVFL 109 (335)
T ss_pred HHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhh--HHHHHHHHH-HHHHHHHHHHHH
Confidence 4457888888877533 22222211 111 12233455567899999999997643 223322222 222222344556
Q ss_pred H-HHhcCChhHHHHHHHhccCchhhhHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 158 L-QVQLQPQEFVTGLALFSCMPTTLSSGVALTH---LAGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 158 ~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~---~agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
+ +.+++|++.. -++-.+..=||.++.++.+. .-+-|.++++..+.+-+.++++.+|++-.++.
T Consensus 110 g~k~l~l~~~~~-~Lia~GtsICGaSAi~A~a~~i~A~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 110 GSSRLKLDKQMS-ILLGAGSSICGAAAVAAIEPVIKAEKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHhCCChhHH-HHHHcchhHHHHHHHHHhccccCCCccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 6 6888886542 23333444444444433333 33446889999999999999999999987663
No 35
>PRK10711 hypothetical protein; Provisional
Probab=95.02 E-value=0.71 Score=41.93 Aligned_cols=88 Identities=14% Similarity=0.096 Sum_probs=69.4
Q ss_pred HHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 023071 130 GAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLG 209 (287)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls 209 (287)
+...++++.++.+...--++.-..++.+++.++.|++....+.==+ .=+..+.. .++..||+.++++..++++-+++
T Consensus 82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkS-VTtPIAm~--is~~iGG~~sLta~~ViitGi~G 158 (231)
T PRK10711 82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKS-VTTPIAMA--VGGSIGGIPAISAVCVIFVGILG 158 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhh-hhHHHHHH--HHHHhCCcHHHHHHHHHHHHHHH
Confidence 3333678888888888777777888999999999988766554332 22333333 69999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023071 210 IMIVPFSISKF 220 (287)
Q Consensus 210 ~~~iPl~l~ll 220 (287)
.+.-|.++.++
T Consensus 159 a~~g~~llk~~ 169 (231)
T PRK10711 159 AVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHc
Confidence 99999999886
No 36
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=94.95 E-value=0.51 Score=44.64 Aligned_cols=133 Identities=16% Similarity=0.093 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQ 161 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~ 161 (287)
.++.+++|+++|-..++.....++- .++.+++.-|.+|.+++.+++.+. -++.++.+.+ ..++.=.+.+.+.+++
T Consensus 169 lilpILiGmilGNld~~~~~~l~~G--i~f~I~f~~f~LG~~lnl~~I~~~--G~~GIlL~v~-vv~~t~~~~~~i~rll 243 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDMRKFLTKG--GPLLIPFFAFALGAGINLSMLLQA--GLAGILLGVL-VTIVTGFFNIFADRLV 243 (312)
T ss_pred HHHHHHHHHHHhccchhhHHHHhcc--ceEeHHHHHHHhcCCeeHHHHHHh--ChHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 3466666666665444443333332 123577777899999999999764 2334433333 3333445667777888
Q ss_pred cCChhHHHHHHHh---ccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 162 LQPQEFVTGLALF---SCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 162 ~l~~~~~~Glvl~---~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
+.++.. |..+- +..=|+.+......-..+..++.|...+..+.++..++.|++..++.
T Consensus 244 g~~~~~--g~li~stAGnAIcgpAAVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 244 GGTGIA--GAAASSTAGNAVATPLAIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred CCChhH--HHHHHHHhhHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777554 33322 22222222222234455567777788888888888888888887764
No 37
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=94.81 E-value=0.04 Score=52.96 Aligned_cols=144 Identities=19% Similarity=0.116 Sum_probs=101.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhcCcccc------ch----hhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071 74 LKIAADNFLPLALIGGVAFGFANPSLGC------LA----DKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG 142 (287)
Q Consensus 74 ~~~l~~n~l~lail~gi~lg~~~P~~~~------~~----~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~ 142 (287)
++-+...+ .++.++++++|..-|.-.. .+ +... ++..++|++++..|-++...-=+.. .+.+.+.-.
T Consensus 242 L~~i~~Pp-tia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~-~~~~~iigi 319 (408)
T KOG2722|consen 242 LKEIFAPP-TIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSA-LKTSVIIGI 319 (408)
T ss_pred HHHhcCch-HHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcc-cCceEEEEE
Confidence 33343444 4888888888876553321 11 1222 5678899999999998876643333 345555556
Q ss_pred HHHHHHHHHHHHHHHHHHh------c-CChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Q 023071 143 LFSILLFTPYFSKLILQVQ------L-QPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPF 215 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~------~-l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl 215 (287)
.+.+++++|+.+..+.... . .||-+...+++..++|++.... .+|++.|--.+-++....-+-.++.+..-+
T Consensus 320 ii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg-~itqL~g~~e~Ecs~il~W~y~va~l~ltv 398 (408)
T KOG2722|consen 320 IIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLG-TITQLNGVAERECSVILFWTYAVASLSLTV 398 (408)
T ss_pred EEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHH-HHHHHhhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 7779999999998887542 1 4577888999999999999999 599999987777777777777777766666
Q ss_pred HHHHH
Q 023071 216 SISKF 220 (287)
Q Consensus 216 ~l~ll 220 (287)
|..++
T Consensus 399 w~~~f 403 (408)
T KOG2722|consen 399 WSVFF 403 (408)
T ss_pred HHHHH
Confidence 66554
No 38
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=93.22 E-value=6.3 Score=37.97 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL 190 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~ 190 (287)
.+-.++....|.+++...+++..|.-...+...+..+.+.=..++.+.+..+.|.. -.+++..|+|...-...+..
T Consensus 241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~----ta~La~sPGGl~~ma~~A~~ 316 (352)
T COG3180 241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLN----TAYLATSPGGLDTMAAIAAA 316 (352)
T ss_pred HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHcCCCcHHHHHHHHHH
Confidence 33445667889999999999876655555555555556666677777777776632 34678899999887667777
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 191 AGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 191 agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
.+-|.++-.++.++=-++-.++.|.+...+.
T Consensus 317 l~ad~a~V~a~q~lRll~il~i~p~l~r~l~ 347 (352)
T COG3180 317 LGADPAFVMALQVLRLLFILLLGPALARFLS 347 (352)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7779999999999988888888888877764
No 39
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=92.76 E-value=7.5 Score=37.80 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhc----Cccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHH-HH
Q 023071 69 WAKPLLKIAADNFLPLALIGGVAFGFAN----PSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGI-FG 142 (287)
Q Consensus 69 ~~~~l~~~l~~n~l~lail~gi~lg~~~----P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l-~~ 142 (287)
++.++.+++. ..+++.+.+.+++-.. |...+ -|+ +..+.+|++.+.+=++.|.+++.+.-++.-... .+
T Consensus 17 ~~~~~f~~l~--~~vl~~~~~~~lsnlgli~~p~~s~---~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~ 91 (378)
T PF05684_consen 17 TKWGFFKYLP--GAVLCYLLGMLLSNLGLIDSPASSP---VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG 91 (378)
T ss_pred hhhhhHhhcC--HHHHHHHHHHHHHHCCCcCCCCcch---HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH
Confidence 3334556663 4457777777755432 22222 222 456667776666666888888876443221111 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
.+...+-. .+++.+..-...+..+...-.+.+.-=+|....+++.+..+-+.++-....+.+++.+.+.+.+++.+-
T Consensus 92 ~~g~viG~-~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~~~~~~a~~aaDnv~~~~~~~~l~~l~ 168 (378)
T PF05684_consen 92 AVGTVIGA-VVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVSDSLFAAALAADNVVMALWFAFLLALP 168 (378)
T ss_pred HHHHHHHH-HHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222223 334444433312334455555555555555555679999999999999999999999988888776653
No 40
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=92.73 E-value=13 Score=38.03 Aligned_cols=135 Identities=10% Similarity=0.051 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhhc---Cccc-cchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchh-HHHHHHHHHHHHHHHHHHHH
Q 023071 83 PLALIGGVAFGFAN---PSLG-CLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWP-VGIFGLFSILLFTPYFSKLI 157 (287)
Q Consensus 83 ~lail~gi~lg~~~---P~~~-~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~-~~l~~~~~~~vl~Plla~~l 157 (287)
.+.+++|+++|... +... ..+++-....+.+|.++|-.|.+++.+++++.++.-- ....+.+++.++.-...+.+
T Consensus 39 ~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~ 118 (559)
T TIGR00840 39 VLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGI 118 (559)
T ss_pred HHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888642 2111 1122211345678889999999999999997664311 11223344444444444444
Q ss_pred HHHhcC-----C--hhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 023071 158 LQVQLQ-----P--QEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALA---MTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 158 ~~l~~l-----~--~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~---~~~lstlls~~~iPl~l~ll 220 (287)
....+. + ..+..|.++.+.=|.++.+ .-+..+-+..+... -..++...++++.=+...+.
T Consensus 119 ~~~~~~~~~~l~~~~allfGAiiSaTDPVAVla---i~~~~~v~~~L~~ll~gESllNDavaIVLf~~~~~~~ 188 (559)
T TIGR00840 119 CLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLA---VFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFH 188 (559)
T ss_pred HhhccccccCCCHHHHHHHhHHhcCCchHHHHH---HHHhcCCCcchhhheehhhhhhccHHHHHHHHHHHHH
Confidence 332221 2 2345555555555555553 23444445444433 35556666666655444433
No 41
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.80 E-value=6.2 Score=40.80 Aligned_cols=104 Identities=14% Similarity=0.038 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~ 186 (287)
....+++.|+..|++++...+.+ +|..++...+..++.-++..+..++.++.+. ....|+.+. +.|-.+.+
T Consensus 270 ~~lll~lFFi~vG~~id~~~l~~---~~~~il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~---~~Gef~~v- 342 (621)
T PRK03562 270 KGLLLGLFFIAVGMSIDFGTLLE---NPLRILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLG---QGGEFAFV- 342 (621)
T ss_pred HHHHHHHHHHHhhhhccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHh---ccccHHHH-
Confidence 34567778889999999987763 3444444445567777788888888888763 355555443 34444444
Q ss_pred HHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 187 LTHLAGG----NSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 187 ~t~~agG----n~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
....+.. |.+....++ +..+++.+++|++..++
T Consensus 343 l~~~a~~~~~i~~~~~~~lv-~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 343 VFGAAQMANVLEPEWAKLLT-LAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHHHCCCCCHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 3332211 344444433 46678888888876553
No 42
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=91.77 E-value=6.4 Score=40.49 Aligned_cols=105 Identities=13% Similarity=0.060 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChh--HHHHHHHhccCchhhhHHHH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQE--FVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~--~~~Glvl~~a~P~a~~s~V~ 186 (287)
....+++.|...|++++...+.+ +|..++...+..++.-++..++.++.++.+.. ...|+.+ .|.|-.+.+
T Consensus 267 ~~lll~lFFi~vGm~id~~~l~~---~~~~il~~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L---~~~Gef~~v- 339 (601)
T PRK03659 267 KGLLLGLFFISVGMALNLGVLYT---HLLWVLISVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVL---SQGGEFAFV- 339 (601)
T ss_pred HHHHHHHHHHHHhhhccHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH---hccccHHHH-
Confidence 34567788899999999987764 45555545555677778888888888887743 3445443 455555554
Q ss_pred HHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 187 LTHLA---GGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 187 ~t~~a---gGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
+...+ |-=.+-.....+...+++.+++|++..++
T Consensus 340 l~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 340 LFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33222 21112222333566677777888776653
No 43
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.50 E-value=9.3 Score=33.64 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChh--HHHHhh-hchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSG--EIGAAA-EAWPVGIFGLFSILLFTPYFSKLILQV 160 (287)
Q Consensus 84 lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~--~l~~~~-~~~~~~l~~~~~~~vl~Plla~~l~~l 160 (287)
.++++|+++|+.........+. ...+.+.+++|.+|+++..+ .+++.. -+++.... -+...+-.=+.++....+
T Consensus 3 ~~li~Gi~lG~~~~~~~~~~~~--~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Lli-pl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 3 IALILGILLGYFLRPPFSLIDK--ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLI-PLATILGSLLGGLLASLL 79 (191)
T ss_pred eeHHHHHHHHHHhccccccccc--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4678899999988655332222 55677888899999988765 333333 22333322 222222222334444455
Q ss_pred hcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 023071 161 QLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISN----LLGIMIVPFSISKF 220 (287)
Q Consensus 161 ~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lst----lls~~~iPl~l~ll 220 (287)
++.+ ...++.+.+..===+.|.+.+++.. |.++.+ +..++| +++.+.+|++...+
T Consensus 80 l~~~--~~~~lav~sG~GwYSlsg~~i~~~~--~~~~G~-iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 80 LGLS--LKESLAVASGFGWYSLSGVLITQLY--GPELGT-IAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred hcCC--HHHHHHHHccCcHHHhHHHHHHhhh--CHHHHH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5444 4555655555544455565355543 444444 334444 57999999998844
No 44
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=90.29 E-value=29 Score=37.28 Aligned_cols=106 Identities=9% Similarity=0.240 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhcCC----hh----HHHHHHHhccCc
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY-FSKLILQVQLQP----QE----FVTGLALFSCMP 178 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pl-la~~l~~l~~l~----~~----~~~Glvl~~a~P 178 (287)
++.+.+.+.||..|+.++.+++++..| ..+...+..++ .|+ ++++++..++.. .. +..|+.+. ..-
T Consensus 107 la~lGlillmFliGLE~Dl~~lr~~~k---~a~~ia~~~~i-lpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS-~Ts 181 (832)
T PLN03159 107 MANLGLLYFLFLVGVEMDISVIRRTGK---KALAIAIAGMA-LPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALS-VTA 181 (832)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHhcch---HHHHHHHHHHH-HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH-Hhh
Confidence 456667778999999999999986433 22222222332 344 334444433211 11 12222221 111
Q ss_pred hhhhHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 179 TTLSSGVALTHLA--GGN-SALALAMTIISNLLGIMIVPFSISK 219 (287)
Q Consensus 179 ~a~~s~V~~t~~a--gGn-~ala~~~~~lstlls~~~iPl~l~l 219 (287)
.++.+.+ ++++- +.+ ..+++...+++.+++.+++-+...+
T Consensus 182 ~pVv~ri-L~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l 224 (832)
T PLN03159 182 FPVLARI-LAEIKLINTELGRIAMSAALVNDMCAWILLALAIAL 224 (832)
T ss_pred HHHHHHH-HHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123332 44333 222 4566777788888888777665443
No 45
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=89.49 E-value=0.029 Score=53.43 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHhhcCccccc-hhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHH-HHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCL-ADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYF-SKL 156 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~-~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pll-a~~ 156 (287)
...+.-++.|+++|...-...+. .+.++ +..+.+..+||..|.++|.+++++..++ ........+.+.=.+ ++.
T Consensus 21 P~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 97 (380)
T PF00999_consen 21 PSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRR---ALALGLVGFLLPFILVGFL 97 (380)
T ss_dssp ---------------------------S-SSHHHHS--SSHHHHTTGGGG------------------------------
T ss_pred CHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccc---ccccccceeeehhhHHHHH
Confidence 44556677777777554221110 12222 5677888899999999999999865543 222222222222122 333
Q ss_pred HHH---HhcCC--hhHHHHHHHhccCchhhhHHHHHHHHcC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcee
Q 023071 157 ILQ---VQLQP--QEFVTGLALFSCMPTTLSSGVALTHLAG--G-NSALALAMTIISNLLGIMIVPFSISKFIAAGVGIS 228 (287)
Q Consensus 157 l~~---l~~l~--~~~~~Glvl~~a~P~a~~s~V~~t~~ag--G-n~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~ 228 (287)
+.. ..+.+ .....|..+....|..+... +.+..+ + ..........++.+++.+...+..... +...+
T Consensus 98 ~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~--l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~---~~~~~ 172 (380)
T PF00999_consen 98 LSFFLFILGLSWAEALLLGAILSATSPAIVSPV--LKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA---QASGQ 172 (380)
T ss_dssp ----------------TTHHHHTT--HHHHHHH--H-HHHT-SSTTHHHHTTTTTTTTTTTTTTT---------------
T ss_pred HHHhhccchhhhHHHhhhHHhhhcccccchhhh--hhhhhcccccccchhhhhchhhccchhhhhhhhhhhh---ccccc
Confidence 332 22332 34555666666666655543 333333 2 355566778888888888888777665 12233
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 229 VPTKQLFKSLVLTLLIPLILGKVLRE 254 (287)
Q Consensus 229 i~~~~l~~~L~~~vllPl~lG~llr~ 254 (287)
.+.......+...+..=.+.|...++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (380)
T PF00999_consen 173 SSLGQLLLSFLWIILIGIVIGLLFGW 198 (380)
T ss_dssp --------------------------
T ss_pred ccccchhcchhhhhhhheeeecccch
Confidence 44444444444444444444444443
No 46
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=88.47 E-value=27 Score=34.44 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHH-HHHHHHHHhcCChhHHHHHHHhc-cCchhhhHHHH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPY-FSKLILQVQLQPQEFVTGLALFS-CMPTTLSSGVA 186 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Pl-la~~l~~l~~l~~~~~~Glvl~~-a~P~a~~s~V~ 186 (287)
....++.++|.-|.+++.+++++.. +.+..-...-.++.=+ .++...++++ +-++..++.+-+ .+||...+...
T Consensus 63 ~~l~l~ilLf~~g~~l~~~~l~~~~---~~I~~La~~~v~it~~~~g~~~~~l~~-~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 63 LVLFLAILLFAGGLELDLRELRRVW---RSILVLALPLVLITALGIGLLAHWLLP-GIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHhHhcCCHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHhC-ChhHHHHHHHhHHhcCCCchhhHH
Confidence 3567788899999999999999654 3332211111111111 2222222222 223333333333 34555544444
Q ss_pred HHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCc-eecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh
Q 023071 187 LTHLAGGNSALALAM---TIISNLLGIMIVPFSISKFIAAGVG-ISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLN 262 (287)
Q Consensus 187 ~t~~agGn~ala~~~---~~lstlls~~~iPl~l~ll~~~~~~-v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~ 262 (287)
..+..+=+......+ ..++.-.+++..=+.+....+++.. .+....+.+.....-+++=+.+|++.++......++
T Consensus 139 i~~~~~vp~ri~~iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~ 218 (429)
T COG0025 139 IFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRR 218 (429)
T ss_pred HHhcCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566677776666655 5778888888877777776532221 122233344444455556666666666554443321
Q ss_pred hhhccccchhHHHHHHHHHHhh
Q 023071 263 IFIRPQNFLFFLFSMSYVSRLF 284 (287)
Q Consensus 263 ~~~~~~~~~~s~i~~~~v~~~~ 284 (287)
.|.++.......++..+...++
T Consensus 219 ~~~~~~~~~~i~L~~~~~~~~~ 240 (429)
T COG0025 219 GWTSPLLETLLTLLLAFAAYLL 240 (429)
T ss_pred cccchHHHHHHHHHHHHHHHHH
Confidence 1223333444455555555443
No 47
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.07 E-value=18 Score=36.67 Aligned_cols=107 Identities=9% Similarity=0.030 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHhccCchhhhHHHHH
Q 023071 110 KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCMPTTLSSGVAL 187 (287)
Q Consensus 110 ~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~--~~~~~Glvl~~a~P~a~~s~V~~ 187 (287)
....|+.|...|++++...+.+ ++...+...+..++.-.+..+..+..++.+ .....|+.+..--.-+....- .
T Consensus 279 ~~f~plFFv~~G~~~d~~~l~~---~~~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~-~ 354 (558)
T PRK10669 279 DAFAVLFFVSVGMLFDPMILIQ---QPLAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAG-L 354 (558)
T ss_pred HHHHHHHHHHhhhhcCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHH-H
Confidence 4557778889999999987753 333333334445555566666666666655 345556655433333322221 2
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 188 THLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 188 t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
....|==.+-....+++.++++.+++|++....
T Consensus 355 ~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 355 GMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222221122233346666778888888776553
No 48
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=88.03 E-value=27 Score=33.83 Aligned_cols=187 Identities=17% Similarity=0.266 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccc--hh-hhc--hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCL--AD-KYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG 142 (287)
Q Consensus 68 ~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~--~~-~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~ 142 (287)
++.|+=.++++|...|-.++.|.+..+..+..... .+ +++ +.+......|-.+|++-+.+.+++.-|+-......
T Consensus 20 ~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~~~f~~~l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~ 99 (368)
T PF03616_consen 20 KFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGISISFDTSLQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLI 99 (368)
T ss_pred HHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceEEEechhHHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHH
Confidence 35666778899999999999998855553222211 11 111 22222223345788888888887644322222111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHH----hccCchhhh--HHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH-H
Q 023071 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLAL----FSCMPTTLS--SGVALTHLA--GGNSALALAMTIISNLLGIMI-V 213 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl----~~a~P~a~~--s~V~~t~~a--gGn~ala~~~~~lstlls~~~-i 213 (287)
......+.=+++..++.+++.+|.+ |++. +.-=+++.+ ... +.+.+ .+-.+++....++..+.+.+. .
T Consensus 100 ~~~~~~~Q~~vG~~la~l~gl~p~~--Gll~Gsi~f~GGhGTAaa~g~~-fe~~~G~~~a~~vg~a~AT~Glv~G~liGg 176 (368)
T PF03616_consen 100 AIILAFLQNIVGLGLAKLLGLDPLF--GLLAGSIGFTGGHGTAAAFGPT-FEELYGWEGATSVGMAAATFGLVVGGLIGG 176 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchH--HHHhccccccCCccHHHHHHHH-HHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1122334445667777888888754 4422 112233332 232 44442 344577777778888776544 6
Q ss_pred HHHHHHHhhc----C------------------CceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071 214 PFSISKFIAA----G------------------VGISVPTKQLFKSLVLTLLIPLILGKVLRESITG 258 (287)
Q Consensus 214 Pl~l~ll~~~----~------------------~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~ 258 (287)
|+.=++.-.. . ..-+++..+++..+ ..+.+.+.+|..++.+..+
T Consensus 177 pi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i~~l-~~i~i~~~~G~~i~~~l~~ 242 (368)
T PF03616_consen 177 PIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLIEHL-ALILIAIGLGYIISALLKK 242 (368)
T ss_pred HHHHHHHHcCCCCCCCccccccccccccccccccccCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7654443210 0 00123445565555 4678888899888887665
No 49
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=87.11 E-value=0.061 Score=52.00 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=78.3
Q ss_pred HHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHH-HHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCC
Q 023071 115 AIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILL-FTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG 193 (287)
Q Consensus 115 lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~v-l~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agG 193 (287)
..|+..|++++...+.+..+++..+......++- ++|...+.....+..++....-.+...++|.+..+++ ++.-.++
T Consensus 52 ~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~v~~~~~~~~~~t~l~~~~~~~gl~~~~-ls~g~~~ 130 (371)
T KOG2718|consen 52 FVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLKVLFLLDPLLAFTWLVTGCFPPGLLSNM-LSFGIKL 130 (371)
T ss_pred HhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHHHHhhcCCcccceEEEeCccccHHHHHH-HHHhcCc
Confidence 4456777777777777666555455556667777 9999999999888888767788899999999999996 9999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 023071 194 NSALALAMTIISNLLGIMIVP 214 (287)
Q Consensus 194 n~ala~~~~~lstlls~~~iP 214 (287)
|.+....++.-.+.+.+..+|
T Consensus 131 ~~~~~~~~~~rP~~~~lG~v~ 151 (371)
T KOG2718|consen 131 DMDLFAGMIKRPTPLALGFVP 151 (371)
T ss_pred cHHHHhhHhhCCcceeehHHH
Confidence 999999998766665555555
No 50
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=86.12 E-value=25 Score=33.59 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhcCccccchhhhc--hh----HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 83 PLALIGGVAFGFANPSLGCLADKYQ--LS----KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 83 ~lail~gi~lg~~~P~~~~~~~~~~--l~----~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
++=+++|..+.-+.|+.... ..++ +. ...+.+.++++|.+++.++....++|-..+ ++.|+.+--++++.
T Consensus 18 ~vpl~~g~~i~tf~P~~~~~-g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l---~~~k~~~~~~~~~~ 93 (326)
T PRK05274 18 LVPLLLGALINTFAPGALYF-GSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTL---LLTKFAVAALVGVI 93 (326)
T ss_pred eHHHHHHHHHHHhCCcceee-CcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhH---HHHHHHHHHHHHHH
Confidence 34466788888888986432 2221 11 123445689999999999998887655333 45677777777787
Q ss_pred HHHHhcCCh---hHHHHH------HHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Q 023071 157 ILQVQLQPQ---EFVTGL------ALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGI 227 (287)
Q Consensus 157 l~~l~~l~~---~~~~Gl------vl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v 227 (287)
+.++++.+. ....|. -.+.-.=.+..... + ..++-+ .-.-....++.=- -|.....++++....
T Consensus 94 ~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~-~-~~~g~~-~d~ga~i~lsl~~----Gp~~tM~lL~aagla 166 (326)
T PRK05274 94 AGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAAL-M-GQYGTK-EDAGAFVLMSLED----GPFMTMLALGAAGLA 166 (326)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-H-HHhCCC-CCcchHHHHHHhh----hHHHHHHHHHhhCcc
Confidence 877765432 111111 12222233333332 2 333222 1111122222222 244434444322223
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 023071 228 SVPTKQLFKSLVLTLLIPLILGKVLRESITGECL 261 (287)
Q Consensus 228 ~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~ 261 (287)
+++..++. -.++|+++|+.++.+.++..+
T Consensus 167 ~~p~~~li-----~allplliG~~lgnl~~~l~~ 195 (326)
T PRK05274 167 SFPPPALV-----GAVLPLLVGFILGNLDPELRQ 195 (326)
T ss_pred cCCCchhh-----HHHHHHHHHHHHHhHHHhhHH
Confidence 45554442 222999999999987665443
No 51
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=85.94 E-value=3.3 Score=39.53 Aligned_cols=130 Identities=15% Similarity=0.055 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023071 84 LALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ 163 (287)
Q Consensus 84 lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l 163 (287)
+.++.|..+|-+.+......++- .++.++..-+..|.+++.+++.+. .++.++ ..+.+.++.+.+.+.+.+++..
T Consensus 178 lplliG~~lgnl~~~l~~~~~~G--i~~lLp~~~~~lG~~l~lq~i~~~--G~~Gil-L~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 178 LPLLVGFILGNLDPELRQFLGKA--VPVLIPFFAFALGNGIDLGTIITA--GLSGIL-LGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHhHHHhhHHHhcCC--cEEEHHHHHHHHhcceeHhHHHhc--CCcchh-hhhhHhhccchhhHhHhheeec
Confidence 44555555554444333332221 123566666778888888877643 222332 2334555566667777787754
Q ss_pred Chh---HHHHHH--HhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 164 PQE---FVTGLA--LFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 164 ~~~---~~~Glv--l~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~ 221 (287)
++. .+.+.- -..|-|.+++ ...-..++..+-++..+....+++.++.|++..++.
T Consensus 253 ~~g~~g~a~~ttaG~aic~pAAva---a~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~ 312 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVATPAAVA---AADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWS 312 (326)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHH---hhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 111111 1112222221 223344556666666666666677777777666553
No 52
>COG3329 Predicted permease [General function prediction only]
Probab=79.06 E-value=6.9 Score=37.16 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhhcCcccc-chhhhc--hhHHHHHHHHHHhcCCCChhHHHHhhhc-hhHHHHHHHHHHHHHHHHH
Q 023071 79 DNFLPLALIGGVAFGFANPSLGC-LADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEA-WPVGIFGLFSILLFTPYFS 154 (287)
Q Consensus 79 ~n~l~lail~gi~lg~~~P~~~~-~~~~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~~-~~~~l~~~~~~~vl~Plla 154 (287)
.|+-+..++.|+.+|+..-..+. ..+++. +.+-.+-+.|+-||++- .+++++..|. -+.++++++. =++.-.++
T Consensus 216 lnpal~lllggl~iGlitGe~g~~vl~~F~~~lFqGvL~lflL~MGm~A-~rrl~elrk~g~~~v~fglla-Pil~g~ig 293 (372)
T COG3329 216 LNPALVLLLGGLAIGLITGEQGESVLKPFFDPLFQGVLCLFLLDMGMTA-GRRLKELRKVGQGLVLFGLLA-PILHGFIG 293 (372)
T ss_pred cCchHHHHHHHHHHhheeccCchhhhhhhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCcceehHHHHH-HHHHHHHH
Confidence 46667899999999988743332 233332 34444555677777754 3334443332 1233333322 12223455
Q ss_pred HHHHHHhcCC
Q 023071 155 KLILQVQLQP 164 (287)
Q Consensus 155 ~~l~~l~~l~ 164 (287)
+.+++..+.+
T Consensus 294 ~~lg~~a~y~ 303 (372)
T COG3329 294 LLLGMIAGYP 303 (372)
T ss_pred HHHHHHhccc
Confidence 5555554443
No 53
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=78.94 E-value=52 Score=33.68 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHhcCCCChhHHHHhhhc--hhHHHHHHHHHHHHHH-HHHHHHH-HHhcCChhHHHHHHHhccCchhhhHHHHHHHHc
Q 023071 116 IFIVSGLTLRSGEIGAAAEA--WPVGIFGLFSILLFTP-YFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLA 191 (287)
Q Consensus 116 im~~~Gl~l~~~~l~~~~~~--~~~~l~~~~~~~vl~P-lla~~l~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~a 191 (287)
.+.+.|++--.+=+ +.+++ ++..+.+. -..+.| ++++.++ +++++++....|++-=+-.-++...+ ..+..
T Consensus 457 Fla~vG~~aG~~f~-~~l~~~G~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~aG~~t~t~~l~~--a~~~~ 531 (562)
T TIGR03802 457 FIAVVGLSAGPQAV-TAIKEMGLTLFLLGI--VVTILPLIITMLIGKYVLKYDPALLLGALAGARTATPALGA--VLERA 531 (562)
T ss_pred HHHHHHHhhhHHHH-HHHHHhhHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCCCcHHHHH--HHHhc
Confidence 33455655544433 34444 33333333 334445 5677777 67999988888885433333333333 35555
Q ss_pred CCCH-HHHHHHH-HHHHHHHHHHHHHHH
Q 023071 192 GGNS-ALALAMT-IISNLLGIMIVPFSI 217 (287)
Q Consensus 192 gGn~-ala~~~~-~lstlls~~~iPl~l 217 (287)
+-|. +.+-..+ .+++++=++..|+++
T Consensus 532 ~~~~~~~gYa~~Yp~~~i~~il~~~~iv 559 (562)
T TIGR03802 532 GSSVPALGYTITYALGNVLLTLLGPLIV 559 (562)
T ss_pred CCCCcccchHhHHHHHHHHHHHHHHHHH
Confidence 4431 2111111 345555555555544
No 54
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=77.85 E-value=54 Score=32.18 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhh---cCccccchhhhc--hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071 68 NWAKPLLKIAADNFLPLALIGGVAFGFA---NPSLGCLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG 142 (287)
Q Consensus 68 ~~~~~l~~~l~~n~l~lail~gi~lg~~---~P~~~~~~~~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~ 142 (287)
++.|+-.++++|...|-.++.|.+.++. .|....+.-+++ +.+...-..|-.+|++-+.+.+++.-|+-...+..
T Consensus 20 ~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~~fd~~l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~ 99 (398)
T TIGR00210 20 RYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEVNFDFSLRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLAT 99 (398)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEEEcChhHHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHH
Confidence 3566667788899999999999885322 244332211111 22333333455778888887777532211111111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHH-hccCch-----hhhHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHH-H
Q 023071 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLAL-FSCMPT-----TLSSGVALTHL--AGGNSALALAMTIISNLLGIMI-V 213 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl-~~a~P~-----a~~s~V~~t~~--agGn~ala~~~~~lstlls~~~-i 213 (287)
...-....=.++..++..++++|.. |++. -...-+ +..... +.+. ..+-.+++....++..+.+.+. .
T Consensus 100 ~~~l~~~Qn~vGv~la~~~gl~P~~--Gll~gsi~~~GGHGTAaA~g~~-f~e~~G~~~a~~lgla~AT~GLv~g~liGg 176 (398)
T TIGR00210 100 AVGFLVIQNAVGIGMASLLGQAPLM--GLLAGSITLSGGHGTGAAWSPV-FYDNYGFRNATEIAIACATFGLVFGGIIGG 176 (398)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHH--HHHhhCccCCCCCcHHHHHHHH-HHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233344566777888888744 5553 222222 223332 4444 3344667777777777777776 5
Q ss_pred HHHHHHHhhc----C--C---ce-----------ecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071 214 PFSISKFIAA----G--V---GI-----------SVPTKQLFKSLVLTLLIPLILGKVLRESITG 258 (287)
Q Consensus 214 Pl~l~ll~~~----~--~---~v-----------~i~~~~l~~~L~~~vllPl~lG~llr~~~~~ 258 (287)
|+.=++.-.. + + .. ..+..+++..+ ..+.+-+.+|..+.+++.+
T Consensus 177 pi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l-~~i~iai~iG~~i~~~l~~ 240 (398)
T TIGR00210 177 PVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETI-ALIAVCLLVGYELNDLVAK 240 (398)
T ss_pred HHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6554433210 0 0 00 12333444444 4677778888887776653
No 55
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=75.89 E-value=81 Score=30.71 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=44.0
Q ss_pred hhH-HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHH
Q 023071 108 LSK-FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 108 l~~-~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~ 186 (287)
+.+ .-+|+-|...|+++|.+.+.+. +...+.....-.+..=...+..++.++.+.....+.-......+ -.+.+
T Consensus 273 ~~~~~fiplFFi~vG~~~dl~~l~~~---~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~g-e~~~v- 347 (397)
T COG0475 273 FGDGLFIPLFFISVGMSLDLGVLLEN---LLLILLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGG-EFAFV- 347 (397)
T ss_pred HHhHHHHHHHHHHhhHHcCHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhh-HHHHH-
Confidence 344 6778888999999999988753 33322222222223333456666677755444443333333333 34443
Q ss_pred HHHHcCC
Q 023071 187 LTHLAGG 193 (287)
Q Consensus 187 ~t~~agG 193 (287)
.+....|
T Consensus 348 ~~~~~~~ 354 (397)
T COG0475 348 LAGIALG 354 (397)
T ss_pred HHHhccc
Confidence 5555555
No 56
>PRK03818 putative transporter; Validated
Probab=73.47 E-value=82 Score=32.22 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=48.6
Q ss_pred HHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHH-HHHHHHH-HHhcCChhHHHHHHHhccCchhhhHHHHHHHH-cCC
Q 023071 117 FIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP-YFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTHL-AGG 193 (287)
Q Consensus 117 m~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~P-lla~~l~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~-agG 193 (287)
+.+.|++--..=+....+.....+.....-..+.| ++++.++ +++++++....|.+ +++.=.+..-+. ..+. .+.
T Consensus 443 la~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~G~~-aG~~t~tp~l~~-a~~~~~~~ 520 (552)
T PRK03818 443 LAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYLTLCGML-AGSMTDPPALAF-ANNLHPTS 520 (552)
T ss_pred HHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-hccCCCcHHHHH-HhcccCCC
Confidence 34555554444444333432222222323333344 4566665 67899988888874 444433333231 3443 555
Q ss_pred C-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 023071 194 N-SALALAMT-IISNLLGIMIVPFSISKF 220 (287)
Q Consensus 194 n-~ala~~~~-~lstlls~~~iPl~l~ll 220 (287)
| .+.+-..+ .++++.-++...+++.++
T Consensus 521 ~~~~~gYa~~Yp~~~~~~i~~~~~~~~~~ 549 (552)
T PRK03818 521 GAAALSYATVYPLVMFLRIITPQLLAVLF 549 (552)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 22222222 345555555566554433
No 57
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=72.97 E-value=21 Score=34.17 Aligned_cols=77 Identities=14% Similarity=0.076 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~ 158 (287)
.||+++.+..++++-+.+.+.+..+... +.++.+.+.|..+|++.+.+|+++. .+|....+.+. ++..-..++.+.
T Consensus 252 P~FvlgFl~~~~l~S~~~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~--G~kp~~~g~i~-~~~l~~~~~~l~ 328 (335)
T TIGR00698 252 PWFAVLFIGVAIFNSFDLLPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKA--GVKPLFASYAG-YLWLVGGGFVLN 328 (335)
T ss_pred ChHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHc--CchHHHHHHHH-HHHHHHHHHHHH
Confidence 4555666666665554433333322222 5566777889999999999999874 34455444433 233334444444
Q ss_pred H
Q 023071 159 Q 159 (287)
Q Consensus 159 ~ 159 (287)
+
T Consensus 329 ~ 329 (335)
T TIGR00698 329 Y 329 (335)
T ss_pred H
Confidence 3
No 58
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=72.96 E-value=57 Score=27.67 Aligned_cols=106 Identities=10% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhcCcccc-chhhh----chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHH-HHHHHHH
Q 023071 85 ALIGGVAFGFANPSLGC-LADKY----QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTP-YFSKLIL 158 (287)
Q Consensus 85 ail~gi~lg~~~P~~~~-~~~~~----~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~P-lla~~l~ 158 (287)
.++.|+++|.+.+.-+. |..+. .+.++.+.+-+...|++--.+=+....++..........-..+.| ++.+.+.
T Consensus 27 ~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~ 106 (154)
T TIGR01625 27 VLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVAL 106 (154)
T ss_pred HHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667765532111 11111 133444555556677666555444333333122222222222233 3344444
Q ss_pred -HHhcCChhHHHHHHHhccCchhhhHHHHHHHHcC
Q 023071 159 -QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAG 192 (287)
Q Consensus 159 -~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~ag 192 (287)
+++++++....|.+ .++.=.+..-.. ..+..+
T Consensus 107 ~~~~~~~~~~~~G~~-aGa~T~tpaL~a-a~~~~~ 139 (154)
T TIGR01625 107 IKLLRINYALTAGML-AGATTNTPALDA-ANDTLR 139 (154)
T ss_pred HHHhCCCHHHHHHHH-hccccChHHHHH-HHHHhc
Confidence 67899988888874 444444343332 455555
No 59
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=71.89 E-value=89 Score=33.64 Aligned_cols=107 Identities=14% Similarity=0.174 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHhccCchhhhHHHH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQ--EFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~--~~~~Glvl~~a~P~a~~s~V~ 186 (287)
..+.+|+.|...|++++...+.+.. .+.......+..++.--+.+++.++.++.+. ....|+.+.. -|...-+
T Consensus 324 ~~lflPlFFv~vGl~idl~~l~~~~-~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~---kG~~~Li- 398 (832)
T PLN03159 324 SGLLLPLFFAISGLKTNVTKIQGPA-TWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNT---KGLVEMI- 398 (832)
T ss_pred HHHHHHHHHHHhhheeeHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc---ccHHHHH-
Confidence 3456788888999999997764211 1111111122222223334455556666653 3444444432 2233322
Q ss_pred HHHH--cCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 187 LTHL--AGG--NSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 187 ~t~~--agG--n~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
.... ..| |.+.-..++....+++.++.|++..++
T Consensus 399 i~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 399 VLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred HHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 111 223333334444556777777766654
No 60
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=71.10 E-value=31 Score=32.80 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 194 NSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 194 n~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
.++.|...+..+.++..+++|++..++
T Consensus 283 ~~~~ATaQvAaavIvTail~P~lt~~~ 309 (314)
T PF03812_consen 283 YAASATAQVAAAVIVTAILTPILTSWW 309 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555556666555554
No 61
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=68.20 E-value=1.2e+02 Score=29.25 Aligned_cols=137 Identities=14% Similarity=0.160 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHhhcCccccchh-hhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHH
Q 023071 79 DNFLPLALIGGVAFGFANPSLGCLAD-KYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLI 157 (287)
Q Consensus 79 ~n~l~lail~gi~lg~~~P~~~~~~~-~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l 157 (287)
-.|+.--++.|+..|=+.|..-.-.. ...+....+-+.||..|+.++.+|+-+.- . ..+-+.+.|..+.-+.++++
T Consensus 30 lsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk-~--iAipgAl~qia~at~lg~gL 106 (408)
T COG4651 30 LSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK-A--IAIPGALAQIALATLLGMGL 106 (408)
T ss_pred CCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH-H--HhcchHHHHHHHHHHHHhHH
Confidence 35566666777776655554432111 11245667778999999999999997532 1 22346677888888889999
Q ss_pred HHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCC--CHH---HHH---HHHHHHHHHHHHHHHHHHHHH
Q 023071 158 LQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGG--NSA---LAL---AMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 158 ~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agG--n~a---la~---~~~~lstlls~~~iPl~l~ll 220 (287)
.+..+.+ +-.|++.-.|...++.....-+.+-++ |.. .|+ .+-=+-.++..+..|.+-..+
T Consensus 107 ~~~lgws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~ 175 (408)
T COG4651 107 SSLLGWS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMVLALVLLPALAGVL 175 (408)
T ss_pred HHHcCCC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHHHHHHHhHHHHhhh
Confidence 9887664 333444444444433332211111111 111 122 222344556666777766655
No 62
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=67.32 E-value=58 Score=30.95 Aligned_cols=20 Identities=20% Similarity=-0.041 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCCChhHHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIG 130 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~ 130 (287)
..+|..-|.+|.+++.+++-
T Consensus 201 ~lIpFf~FaLGaginl~~i~ 220 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVII 220 (314)
T ss_pred eeeehhhhhhcCCCCHHHHH
Confidence 34555556666666666654
No 63
>PRK09903 putative transporter YfdV; Provisional
Probab=66.13 E-value=1.1e+02 Score=28.37 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHhccCchhhhHHHH
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ-VQLQPQEFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~-l~~l~~~~~~Glvl~~a~P~a~~s~V~ 186 (287)
+.++..|..+|..-.+.+.++..+ ++..... ....+++.=++++.+.+ .+..+.+......+.++.+-+..-.+.
T Consensus 40 v~~v~lPalif~s~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~P 115 (314)
T PRK09903 40 VLNYALPAALFVSITRANREMIFA---DTRLTLV-SLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFA 115 (314)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHh---hhhHHHH-HHHHHHHHHHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHH
Confidence 456788887776666665554432 2333332 33333333355566654 445553333333333444433222223
Q ss_pred HHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q 023071 187 LTHLAGGNSAL-ALAMTIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 187 ~t~~agGn~al-a~~~~~lstlls~~~iPl~l~ll~ 221 (287)
..+..-||.+. ++...........+..+...+.+.
T Consensus 116 l~~~~~G~~~~~~~~~a~~~~~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 116 VLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHcCchhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 45555466533 222222333445556666666553
No 64
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=65.16 E-value=1.3e+02 Score=30.76 Aligned_cols=72 Identities=8% Similarity=-0.055 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCCChhHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhh
Q 023071 110 KFSTFAIFIVSGLTLRSGEIGAAAEA-WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLS 182 (287)
Q Consensus 110 ~~~l~lim~~~Gl~l~~~~l~~~~~~-~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~ 182 (287)
.+.+.+.++++|++.-.+=++...|+ ++..+.+++... ..=++++++.+++++++..+.|++-=+..-++..
T Consensus 61 ~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~-~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l 133 (562)
T TIGR03802 61 AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAV-SGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVI 133 (562)
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHH
Confidence 34444556788888877766655443 555555444333 3346678888999999999999876555444433
No 65
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=64.09 E-value=1.2e+02 Score=29.27 Aligned_cols=104 Identities=13% Similarity=-0.028 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHL 190 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~ 190 (287)
+..+++|+..|.-.|+.-+ +.||+..+++...|+.+. .++..+..++.++..+..+-+.+..=+..+-++ +.+
T Consensus 70 l~P~LIF~GIGAmtDFgpl---lanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~--s~~ 142 (360)
T PF03977_consen 70 LFPPLIFMGIGAMTDFGPL---LANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGADGPTSIFV--SSK 142 (360)
T ss_pred hhhHHHHHHHhHHHhhHHH---HhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHH--HHh
Confidence 3455688899987666554 479999999999999876 556666667888877777777777755555443 444
Q ss_pred cCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 023071 191 AGGNSALALAMTIIS-NLLGIMIVPFSISKFI 221 (287)
Q Consensus 191 agGn~ala~~~~~ls-tlls~~~iPl~l~ll~ 221 (287)
..-|.--......=| .-+.++.-|..+.++.
T Consensus 143 LAp~LlgpIaVaAYsYMaLvPiiqPpimklLt 174 (360)
T PF03977_consen 143 LAPHLLGPIAVAAYSYMALVPIIQPPIMKLLT 174 (360)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence 433322222222222 3466777788888875
No 66
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=62.10 E-value=1.6e+02 Score=28.78 Aligned_cols=104 Identities=10% Similarity=-0.033 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhchhHHHH-HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIF-GLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTH 189 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~-~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~ 189 (287)
+-.+++|+..|.-.|+.-+ +.||+..++ +...|+.+. ..+..+..++.+...+..+-+.+.+=+..+-++ +.
T Consensus 106 l~P~LIFlGIGAMtDFgpl---lanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~--s~ 178 (399)
T TIGR03136 106 LVACILFFGIGAMSDISFI---LARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA--SL 178 (399)
T ss_pred cHHHHHHHhccHHhcchHH---HhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH--HH
Confidence 3355688899987766655 478999888 788898876 445556667788777777777776655444443 33
Q ss_pred HcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 023071 190 LAGGNSALALAMTII-SNLLGIMIVPFSISKFI 221 (287)
Q Consensus 190 ~agGn~ala~~~~~l-stlls~~~iPl~l~ll~ 221 (287)
+..-|.--+.....= =.-+.++.-|-.+.++.
T Consensus 179 kLAp~Llg~IaVAAYsYMaLVPiiqPpimklLt 211 (399)
T TIGR03136 179 ILAKDLFVPISIIAYLYLSLTYAGYPYLIKLLV 211 (399)
T ss_pred hhhhHhHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 333332222222222 23456677788888875
No 67
>PRK03818 putative transporter; Validated
Probab=62.04 E-value=1.9e+02 Score=29.56 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEA-WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSS 183 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~-~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s 183 (287)
..+.+.+.++..|++--.+=+....++ ++..+.+.+. .++.-++++.+.+++++++....|++-=+..-++...
T Consensus 63 ~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~ 137 (552)
T PRK03818 63 QEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLI-VILGGLVTAILHKLFGIPLPVMLGIFSGAVTNTPALG 137 (552)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHhhccccccHHHH
Confidence 344555556777777766655544332 3444433332 2223345677778899998888887655444333333
No 68
>PRK04972 putative transporter; Provisional
Probab=59.69 E-value=2.1e+02 Score=29.30 Aligned_cols=73 Identities=8% Similarity=-0.030 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEA-WPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSG 184 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~-~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~ 184 (287)
+.+.+.+++.|++--.+=+....++ ++..+.+.+ ..++.-++++.+.+++++++....|++-=+..-++...+
T Consensus 64 ~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~aGa~T~tp~l~~ 137 (558)
T PRK04972 64 LGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALV-MVGSALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVG 137 (558)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHhhccccCcHHHHH
Confidence 3344445677776665554443332 344433332 222233566777788999988888877655544444433
No 69
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=59.33 E-value=1.1e+02 Score=33.03 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCCChhHHHH-h--hhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHH
Q 023071 110 KFSTFAIFIVSGLTLRSGEIGA-A--AEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 110 ~~~l~lim~~~Gl~l~~~~l~~-~--~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~ 186 (287)
.+....+|+..|+.+...++.. . ...|+.+++++++.++.-|..++.+..+.+.......-+++--.-|-|+.|.+
T Consensus 298 ~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIy- 376 (810)
T TIGR00844 298 VLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVF- 376 (810)
T ss_pred HHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHH-
Confidence 3445567888999998877742 1 12467778888888899988888755444333345666777777888887765
Q ss_pred HHHHcCCC
Q 023071 187 LTHLAGGN 194 (287)
Q Consensus 187 ~t~~agGn 194 (287)
+...+.+.
T Consensus 377 yl~~A~~~ 384 (810)
T TIGR00844 377 AAILSKSQ 384 (810)
T ss_pred HHHHHHHh
Confidence 65555333
No 70
>PRK05326 potassium/proton antiporter; Reviewed
Probab=58.66 E-value=1.1e+02 Score=31.11 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHH
Q 023071 110 KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTH 189 (287)
Q Consensus 110 ~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~ 189 (287)
....+++|+..|+.++..++.+.. +..+.+..+..++.=|+..+.....++.+. ....++-.+.|=|..+.+ ++.
T Consensus 277 ~l~~~~~Fv~lGl~~~~~~l~~~~--~~~l~i~~~l~~vaR~l~v~l~~~~~~~~~--~e~~~i~~~g~RG~v~i~-lA~ 351 (562)
T PRK05326 277 WLAQIGMFLVLGLLVTPSRLLDIA--LPALLLALFLILVARPLAVFLSLLPFRFNL--REKLFISWVGLRGAVPIV-LAT 351 (562)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCH--hhhheeeeecchhHHHHH-HHH
Confidence 344556778888888888776432 222223333444555665555544444432 222222222233333332 332
Q ss_pred H---cC---CCH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 190 L---AG---GNS--ALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 190 ~---ag---Gn~--ala~~~~~lstlls~~~iPl~l~ll 220 (287)
. +| ++. ..+..++.+|++++..++|.....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 352 FPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 2 11 111 2333445667777777777665554
No 71
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=54.72 E-value=1.4e+02 Score=25.67 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhch--hHHHHHHHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHhccCchhhhHH
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAW--PVGIFGLFSILLFTPYFSKLILQ-VQLQPQEFVTGLALFSCMPTTLSSG 184 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~--~~~l~~~~~~~vl~Plla~~l~~-l~~l~~~~~~Glvl~~a~P~a~~s~ 184 (287)
+.++.+.+-+...|++--.+ +.+.+|+. +..+.+.+ -.++..++++.+++ ++++|+....|.+-=+-.-++....
T Consensus 55 l~~~GL~lFl~~VGl~aG~~-F~~~l~~~G~~~~~~~~~-i~~~~~~~~~~~~~~~~~l~~~~~~G~~aGa~T~tp~L~~ 132 (169)
T PF06826_consen 55 LRQLGLALFLAAVGLSAGPG-FFSSLKRGGLKLLLLGVI-ITLVPLLIALVIGRYLFKLNPGIAAGILAGALTSTPALAA 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHccccCcHHHHH
Confidence 44555555666777766654 44444433 33333332 33334456777787 8999988888876544433333333
No 72
>PRK04972 putative transporter; Provisional
Probab=54.32 E-value=2.6e+02 Score=28.66 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred HHhcCCCChhHHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHH-HHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCC
Q 023071 118 IVSGLTLRSGEIGAAAEA--WPVGIFGLFSILLFTPYFSKLIL-QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194 (287)
Q Consensus 118 ~~~Gl~l~~~~l~~~~~~--~~~~l~~~~~~~vl~Plla~~l~-~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn 194 (287)
.+.|++--.. +.+.+++ ++..+.+.++.. +..++++.++ ++++.++....|.+ +++.=.+.+-+. ..+..+-|
T Consensus 454 a~vGl~aG~~-f~~~~~~~g~~~~~~g~~~t~-~~~~~~~~~~~~~~k~~~~~~~G~~-aG~~t~~~~l~~-~~~~~~~~ 529 (558)
T PRK04972 454 AGVGLSAGSG-INNGLGAVGGQMLIAGLIVSL-VPVVICFLFGAYVLRMNRALLFGAI-MGARTCAPAMEI-ISDTARSN 529 (558)
T ss_pred HHHHHhhhHH-HHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHH-hCCCCCcHHHHH-HHhhcCCC
Confidence 3445444333 3334443 344444433333 3345567777 67889988888874 444433333332 46666544
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHH
Q 023071 195 SALALAM---TIISNLLGIMIVPFSIS 218 (287)
Q Consensus 195 ~ala~~~---~~lstlls~~~iPl~l~ 218 (287)
. -++.+ =.+++++=++..|+++.
T Consensus 530 ~-~~~gYa~~yp~~~il~~l~~~~iv~ 555 (558)
T PRK04972 530 I-PALGYAGTYAIANVLLTLAGTLIVI 555 (558)
T ss_pred C-cccccHhHHHHHHHHHHHHHHHHHH
Confidence 2 22222 23455555556665554
No 73
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=54.27 E-value=2.1e+02 Score=27.70 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=25.4
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071 228 SVPTKQLFKSLVLTLLIPLILGKVLRESITG 258 (287)
Q Consensus 228 ~i~~~~l~~~L~~~vllPl~lG~llr~~~~~ 258 (287)
.+|...+++++.-.+++-++++..+++.-.+
T Consensus 162 g~~~~~il~Nl~Pvii~~~lla~GL~~~p~~ 192 (354)
T PF04346_consen 162 GFDIGMILINLIPVIIFAILLAIGLWFFPEK 192 (354)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5778888999999999999999988876443
No 74
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=47.75 E-value=2.9e+02 Score=27.29 Aligned_cols=187 Identities=14% Similarity=0.184 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhhcCcccc---chhhhc--hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHH
Q 023071 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGC---LADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFG 142 (287)
Q Consensus 68 ~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~---~~~~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~ 142 (287)
++.++=.+|++|...|=.++.|.+.+...|.... +...++ +.+...-..|-.+|++-+.+.+++.-|.--..+..
T Consensus 22 ~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~ 101 (404)
T COG0786 22 RFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFDTSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLAT 101 (404)
T ss_pred HHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCCcccccHHHHHHHHHhccccchhHHHhcChhHHHHHHH
Confidence 3455556788888888888888887776654432 211221 22322223345889999999988654432221111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhc-cCc-----hhhhHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHH-HH
Q 023071 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALFS-CMP-----TTLSSGVALTHL-AGGNSALALAMTIISNLLGIMI-VP 214 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~-a~P-----~a~~s~V~~t~~-agGn~ala~~~~~lstlls~~~-iP 214 (287)
...--++.=.++..++.+.++||.+ |++.=+ .+- .+..+.. +.+. +.+-.+.+....++..+.+.+. .|
T Consensus 102 a~~l~~~Qn~igi~la~~lgidpl~--gllagsIsl~GGHGtaAA~~~~-f~~~G~~~A~~va~A~ATfGlv~GgliGgp 178 (404)
T COG0786 102 AAGLAVLQNFIGIGLAKLLGLDPLI--GLLAGSISLVGGHGTAAAWGPT-FEDLGAEGATEVAMASATFGLVAGGLIGGP 178 (404)
T ss_pred HHHHHHHHHHHHHHHHHHcCccHHH--HHHhcceeecCCCchHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHhHhcCcH
Confidence 1112222334556677777887643 444311 111 1223332 4444 2334667777777888877766 56
Q ss_pred HHHHHHhhc--------C--------------CceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023071 215 FSISKFIAA--------G--------------VGISVPTKQLFKSLVLTLLIPLILGKVLRESITG 258 (287)
Q Consensus 215 l~l~ll~~~--------~--------------~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~ 258 (287)
+-=++.-.. + ..-.++...+.. .+.++.+.+.+|..+.++.++
T Consensus 179 va~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~i~i~~~vG~~i~~~l~~ 243 (404)
T COG0786 179 VARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIE-TLAIIAICLAVGKIINQLLKS 243 (404)
T ss_pred HHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence 655444211 0 011234434444 446888899999999888776
No 75
>COG2855 Predicted membrane protein [Function unknown]
Probab=47.72 E-value=1.2e+02 Score=29.24 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHhhhc
Q 023071 81 FLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAAAEA 135 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~ 135 (287)
|++++.+.-.++.-+.-.+..+.+... +.++.+...|..+|++.+.+++++.-.|
T Consensus 255 wFi~gFl~~a~lnS~~~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G~k 310 (334)
T COG2855 255 WFILGFLLVALLNSLGLIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAGGK 310 (334)
T ss_pred HHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcCcc
Confidence 344444444443333322333333322 5667777889999999999999975443
No 76
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=45.68 E-value=2.9e+02 Score=26.64 Aligned_cols=110 Identities=10% Similarity=-0.037 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHH--HHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHH
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFS--ILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGV 185 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~--~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V 185 (287)
+-+..+|.+.+.+-++.|.+++-+.-+ |.+.+-+.. ..++-=.+++.+.+-+..| .+..+-++.+.=-+|.+...
T Consensus 61 v~n~llpamI~lmLlqcd~Rki~Klg~--rll~ifli~sv~~vlGfIl~yp~~ksf~gd-~Wka~gmi~gSytGGSaNmA 137 (384)
T COG5505 61 VWNYLLPAMIPLMLLQCDVRKIFKLGR--RLLFIFLISSVGTVLGFILAYPLLKSFIGD-LWKAGGMISGSYTGGSANMA 137 (384)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHhhcc--hhhHHHHHHHHHHHHHHHHHHHHHhhhcch-HHhhhhheeeeeeCCcchHH
Confidence 345566666666767888888765433 333222222 2222223344444433333 34455555555555554444
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 186 ALTHLAGGNSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 186 ~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
++.....-+.++-.......|+.=-+..|+.+.+.
T Consensus 138 AmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iV 172 (384)
T COG5505 138 AMQAALEVPGEYFSATLAADTVMYSLLFFLLISIV 172 (384)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888887777776653
No 77
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=43.28 E-value=36 Score=32.11 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhcCccccchhhhc-hhHHHHHHHHHHhcCCCChhHHHHh
Q 023071 81 FLPLALIGGVAFGFANPSLGCLADKYQ-LSKFSTFAIFIVSGLTLRSGEIGAA 132 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~~~~~~~-l~~~~l~lim~~~Gl~l~~~~l~~~ 132 (287)
||+++.+...++.-+...+....+... +..+...+.|..+|++.+.+|+++.
T Consensus 245 ~FvlgFl~~~~l~s~~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 245 WFVLGFLAASLLNSLGLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 444555555555444433333222221 4566677789999999999999874
No 78
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.98 E-value=2.9e+02 Score=26.00 Aligned_cols=108 Identities=16% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhc---CccccchhhhchhHHHHHHHHHHh-cCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 023071 83 PLALIGGVAFGFAN---PSLGCLADKYQLSKFSTFAIFIVS-GLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (287)
Q Consensus 83 ~lail~gi~lg~~~---P~~~~~~~~~~l~~~~l~lim~~~-Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~ 158 (287)
.+.+.+|.+++... ++....+..+ ..++.+|.++|.. .-+...+++.+ +........+.+++.=++++.+.
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~l-v~~~~lP~liF~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKL-VFNVFLPALIFSSIANTDTLEDLLS----LWFIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHhccchhhhhh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555565555432 1212222222 4466777766544 33344444442 23333333444555556777777
Q ss_pred HHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCH
Q 023071 159 QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNS 195 (287)
Q Consensus 159 ~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ 195 (287)
+++..+.+......+.++.+=+..-.+.+....-|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~~ 121 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGER 121 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHHHHHhcch
Confidence 8777776666655555555544443334555555553
No 79
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=40.78 E-value=3.4e+02 Score=26.08 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcCccc-cchhhhc--hhHHHHHHHHHHhcCCCChhHHHHhhh-chhHHHHHHH
Q 023071 69 WAKPLLKIAADNFLPLALIGGVAFGFANPSLG-CLADKYQ--LSKFSTFAIFIVSGLTLRSGEIGAAAE-AWPVGIFGLF 144 (287)
Q Consensus 69 ~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~-~~~~~~~--l~~~~l~lim~~~Gl~l~~~~l~~~~~-~~~~~l~~~~ 144 (287)
|++-+.+-+ .|.-++.++.|+++|+.....+ ...+++. +.+-.+.+.++-||+.- .+++++..+ .|+.+.++
T Consensus 167 ~~~~l~E~l-~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fg-- 242 (327)
T PF05982_consen 167 WGELLHESL-TNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFG-- 242 (327)
T ss_pred HHHHHHHHH-cCchHHHHHHHHHHhheeCccchhhccchhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHH--
Confidence 433444444 4555788999999999874433 2233431 33444555556666532 233333221 23333333
Q ss_pred HHHHHHHH----HHHHHHHHhcCChh
Q 023071 145 SILLFTPY----FSKLILQVQLQPQE 166 (287)
Q Consensus 145 ~~~vl~Pl----la~~l~~l~~l~~~ 166 (287)
+++|+ +++.+++..+++..
T Consensus 243 ---i~~Pli~a~ig~~lg~~~gls~G 265 (327)
T PF05982_consen 243 ---ILMPLINALIGIGLGWLLGLSPG 265 (327)
T ss_pred ---HHHHHHHHHHHHHHHHHhCCCCc
Confidence 34565 45666677777743
No 80
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=40.59 E-value=3.8e+02 Score=26.59 Aligned_cols=71 Identities=18% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023071 188 THLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAGVGISVPTKQLFKSLVLTLLIPLILGKVLRESITGEC 260 (287)
Q Consensus 188 t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~ 260 (287)
...+|=|.-.-....+++.-++.++=|+-..+|..++. .++|..++.+...-. ++...+..++=-++|+..
T Consensus 347 ~~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~i-a~~~~~~i~~~~~Pf-~~~~~~~l~l~~~~P~l~ 417 (425)
T PRK15060 347 VKEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGV-AKLKFDDAVRGVFPY-VLVLYSLLVLFIFIPELI 417 (425)
T ss_pred HHHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHh-cCCCHHHHHHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence 35566666655556666666777777777777654222 256777777666533 445555555555566644
No 81
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=39.51 E-value=3.1e+02 Score=25.37 Aligned_cols=68 Identities=18% Similarity=0.127 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHH-HhcCChhHHHHHHHhccCc
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQ-VQLQPQEFVTGLALFSCMP 178 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~-l~~l~~~~~~Glvl~~a~P 178 (287)
+.++.+|..+|..-.+-+.++.. ...++. .......+...-++++.+++ .+..|.+......+.++.+
T Consensus 42 v~~i~lP~lif~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (321)
T TIGR00946 42 VINFALPLTIFHSISTTLADILQ--KSQSPV-VLFLWGAFSGSYALIWLITKPLFKADYGKLSGFLLVSALP 110 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhhhc
Confidence 45677887776654443322111 111222 22233344555567777777 5666655555555555444
No 82
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=37.79 E-value=1.5e+02 Score=28.15 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 023071 143 LFSILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLL 208 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstll 208 (287)
.+.-+++.-.++|.+++.++++.+....+.+...+=-...+.. ++...=+|.+.++...+...++
T Consensus 252 v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~-lA~~~f~~~~~~a~~~~~~~l~ 316 (328)
T TIGR00832 252 LLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIA-VAISLFGLNSGAALATVVGPLI 316 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHH-HHHHhCCCCcccHHHHHhhhhh
Confidence 3455666678888888888888888887777777754444432 4554445545555444444333
No 83
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=37.58 E-value=4.6e+02 Score=26.67 Aligned_cols=191 Identities=19% Similarity=0.220 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHhhcCcccc-chhhh----chhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGC-LADKY----QLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFS 154 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~-~~~~~----~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla 154 (287)
..+++-+.+|.+.| ....+. .++.| .+++.++..++|-.|++-+.+.++...+ |... .+.+.-.+-.-+.+
T Consensus 32 P~LllFl~iGm~aG--~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~-pals-LATlGVl~Ts~Ltg 107 (574)
T COG3263 32 PLLLLFLSIGMLAG--VDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAG-PALS-LATLGVLITSGLTG 107 (574)
T ss_pred hHHHHHHHHHHHcC--CCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhh-hhHH-HHHHHHHHHHHHHH
Confidence 33445555566554 223331 12222 3567788889999999999999997763 3332 33333333333444
Q ss_pred HHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHH--HHHHHHH---HHHHHHHHHHHHHHHHHhhcCCceec
Q 023071 155 KLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSA--LALAMTI---ISNLLGIMIVPFSISKFIAAGVGISV 229 (287)
Q Consensus 155 ~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~a--la~~~~~---lstlls~~~iPl~l~ll~~~~~~v~i 229 (287)
..-.+++++ ++..|+++=+..-.+.+++| ++-+-|-|.. .+.++-+ -+.=.+++++=-++.+..+ |+. ..
T Consensus 108 ~aA~~ll~l--~wle~~LiGAiVgSTDAAAV-F~lL~~~nl~erv~stLEiESGtNDPmAvfLTitlieli~~-get-~l 182 (574)
T COG3263 108 VAAAYLLNL--DWLEGLLIGAIVGSTDAAAV-FSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAG-GET-NL 182 (574)
T ss_pred HHHHHHhcc--HHHHHHHHHHhhccccHHHH-HHHHccCChhhhhhhhEEeecCCCCceeeehhHHHHHHHhc-ccc-cc
Confidence 444555555 57888888888889999997 9888544432 2221100 1112333333333344432 211 13
Q ss_pred CHHH---HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHHHHhhc
Q 023071 230 PTKQ---LFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSRLFS 285 (287)
Q Consensus 230 ~~~~---l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~~~~ 285 (287)
+..- .+.+...-+++=+..|++..+...+.. .+ ....+.+.+..-++.||
T Consensus 183 ~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld--~GL~pil~la~~Ll~fs 235 (574)
T COG3263 183 SWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LD--SGLYPILALAGGLLIFS 235 (574)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cc--cchhHHHHHHHHHHHHH
Confidence 3322 234555555555555655554443321 22 33444555555555554
No 84
>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=34.37 E-value=2.6e+02 Score=23.19 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhc-----hhHHHHH
Q 023071 68 NWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEA-----WPVGIFG 142 (287)
Q Consensus 68 ~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~-----~~~~l~~ 142 (287)
+.+|.+..|+.+-- ++=+.+|++.|-.+-.. .+++ +..+..|++-...|- .+++++.-.+.. .-...+.
T Consensus 2 ~mlkeFkeF~~RGN-VvDLAVgVIIGaAFg~I---V~Sl-V~diImPlIg~~~gg-~dfs~l~~~l~~~~~~i~yG~Fi~ 75 (130)
T COG1970 2 SMLKEFKEFALRGN-VVDLAVGVIIGAAFGKI---VTSL-VNDIIMPLIGLLVGG-LDFSNLFITLGIPAVVIAYGAFIQ 75 (130)
T ss_pred cHHHHHHHHHHccC-hhhHHHHHHhHHHHHHH---HHHH-HHHHHHhhhhhhcCC-cChhhheeecCCCceeeeHhHHHH
Confidence 45677788876532 35555566666443222 2233 445566665555554 677766544431 1122456
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023071 143 LFSILLFTPYFSKLILQV 160 (287)
Q Consensus 143 ~~~~~vl~Plla~~l~~l 160 (287)
.++||++.-+..|.+.+.
T Consensus 76 ~vinFlIiAf~iFl~Vk~ 93 (130)
T COG1970 76 AVINFLIIAFAIFLVVKA 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778999888877777654
No 85
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=33.78 E-value=4.5e+02 Score=25.52 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=58.2
Q ss_pred HHHHHhhcCccccchh-hhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Q 023071 89 GVAFGFANPSLGCLAD-KYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEF 167 (287)
Q Consensus 89 gi~lg~~~P~~~~~~~-~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~ 167 (287)
.+.+...+|....... ...++.+.+-+.+-.+|.+.+.+++.+ .|...++ .++.+.+.=++.+++++++..|-+.
T Consensus 248 t~~l~~~~~~~~~~l~g~~~lg~~lly~ffa~IGa~a~i~~l~~---ap~~~l~-~~i~l~iH~~l~l~~~kl~k~~l~~ 323 (378)
T PF05684_consen 248 TLGLATSFPPFRKLLRGASELGTFLLYLFFAVIGASADISELLD---APSLFLF-GFIILAIHLLLMLILGKLFKIDLFE 323 (378)
T ss_pred HHHHHHhccchhhcCCchHHHHHHHHHHHHHHHccccCHHHHHH---hHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3334444554444322 223555555556668899888887764 4444443 4445666667778899999988433
Q ss_pred HHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHH
Q 023071 168 VTGLALFSCMPTTLSSGVALTHLAGGNSALALAMT 202 (287)
Q Consensus 168 ~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~ 202 (287)
..+--.++.=+...+. +++...+ .++..--+
T Consensus 324 -~~vAS~AnIGGpaTA~-a~A~a~~--~~Lv~pgv 354 (378)
T PF05684_consen 324 -LLVASNANIGGPATAP-AVAAAKG--PSLVPPGV 354 (378)
T ss_pred -HHHHhhcccCCcchHH-HHHHhcC--CccHHHHH
Confidence 2233344443333344 3666555 44443333
No 86
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=32.79 E-value=3.3e+02 Score=26.34 Aligned_cols=86 Identities=10% Similarity=0.065 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhhcCccccchh---hhc--hhHHHHHHHHHHhcCC-CChhHHHHhhhchhHHHHHHHHHHHHHHHH
Q 023071 80 NFLPLALIGGVAFGFANPSLGCLAD---KYQ--LSKFSTFAIFIVSGLT-LRSGEIGAAAEAWPVGIFGLFSILLFTPYF 153 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~~~~~~---~~~--l~~~~l~lim~~~Gl~-l~~~~l~~~~~~~~~~l~~~~~~~vl~Pll 153 (287)
+.+.+.++.++++....-.+....+ .+. +....+..+|...|+. .+++|+.+.+. ++.+ ...+...+-+=+.
T Consensus 205 h~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t-~~~v-viiv~~Vlg~ii~ 282 (347)
T TIGR00783 205 PAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALS-WQFV-VICLSVVVAMILG 282 (347)
T ss_pred CHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhc-hhHh-hhHHHHHHHHHHH
Confidence 4466778888876665533322222 211 2233455567778887 79999998874 4443 3344444445577
Q ss_pred HHHHHHHhcCChhH
Q 023071 154 SKLILQVQLQPQEF 167 (287)
Q Consensus 154 a~~l~~l~~l~~~~ 167 (287)
++.++++++.-|-.
T Consensus 283 s~lvGKllG~YPiE 296 (347)
T TIGR00783 283 GAFLGKLMGMYPVE 296 (347)
T ss_pred HHHHHHHhCCChHH
Confidence 78899998877643
No 87
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=32.65 E-value=27 Score=33.04 Aligned_cols=85 Identities=19% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhhcCccccchhhhc-hh-HHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 79 DNFLPLALIGGVAFGFANPSLGCLADKYQ-LS-KFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 79 ~n~l~lail~gi~lg~~~P~~~~~~~~~~-l~-~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
-+..+-+.++|+.++. .+......+..+ +. ....++.|...|+.++.+.+......+.......+..++.-++..+.
T Consensus 234 ~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~ 312 (380)
T PF00999_consen 234 LSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYL 312 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeeh
Confidence 3445555556665551 111111122211 23 55677788899999998877422233333333333444445555555
Q ss_pred HHHHhcCC
Q 023071 157 ILQVQLQP 164 (287)
Q Consensus 157 l~~l~~l~ 164 (287)
..+..+.+
T Consensus 313 ~~~~~~~~ 320 (380)
T PF00999_consen 313 ASRLFGIP 320 (380)
T ss_dssp --------
T ss_pred hhhhcccc
Confidence 55554443
No 88
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=30.98 E-value=3.6e+02 Score=26.43 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhhcCcccc--chhhh-c-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGFANPSLGC--LADKY-Q-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~--~~~~~-~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
.++.+++.|+++-...+.... ..++. + ++...+-+.....=++++..++.+.. -.++..++.|.+++=+..+.
T Consensus 247 ~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a---~Plliil~~q~i~~~l~~~f 323 (398)
T TIGR00210 247 TFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLA---GPIALILLVQVMFMALYAIF 323 (398)
T ss_pred chHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345666666665554432211 11111 1 33333333222333477777777543 56666777888888765554
Q ss_pred HH-HHhcCChhHHH---HH--HHhccCchhhhHHHHHHHHcCCC
Q 023071 157 IL-QVQLQPQEFVT---GL--ALFSCMPTTLSSGVALTHLAGGN 194 (287)
Q Consensus 157 l~-~l~~l~~~~~~---Gl--vl~~a~P~a~~s~V~~t~~agGn 194 (287)
+. +.++-|-|-+. |. .-+++.|++.+.--+.|++||-.
T Consensus 324 v~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s 367 (398)
T TIGR00210 324 VTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPS 367 (398)
T ss_pred HhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCC
Confidence 44 55654433322 21 34668888886665678888764
No 89
>COG0679 Predicted permeases [General function prediction only]
Probab=26.58 E-value=5.3e+02 Score=24.00 Aligned_cols=116 Identities=16% Similarity=0.041 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhcCcccc---chhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 023071 82 LPLALIGGVAFGFANPSLGC---LADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLIL 158 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~---~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~ 158 (287)
..+.+.+|.+++...-.... .++.+ +.++.+|...|..-.+-+.++. ++.+......+...+.. +..+.+.
T Consensus 12 i~lii~lGy~~~r~~~~~~~~~~~ls~l-v~~~~lP~LlF~~i~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~ 85 (311)
T COG0679 12 IFLIILLGYLLKRFGILDEEAARGLSRL-VVYVALPALLFNSIATADLSGL----ADLGLIVASLVATLLAF-FLLALIG 85 (311)
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHH-HHHHHhHHHHHHHHHhCCcchh----hhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34555666666655432222 23333 4567788777665444444443 22344444444444444 3333333
Q ss_pred -HHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHH
Q 023071 159 -QVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTI 203 (287)
Q Consensus 159 -~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~ 203 (287)
+.+..+.....+....+.-|-...-....+...-||..++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~ 131 (311)
T COG0679 86 RFLFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIF 131 (311)
T ss_pred HHHhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHH
Confidence 445556666667777777777666543466666777766655443
No 90
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=25.72 E-value=1.2e+02 Score=17.21 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 023071 240 LTLLIPLILGKVLRES 255 (287)
Q Consensus 240 ~~vllPl~lG~llr~~ 255 (287)
..++.|++.|..++.+
T Consensus 2 ~~iIaPi~VGvvl~l~ 17 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLF 17 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHH
Confidence 3578899999988754
No 91
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=25.18 E-value=6.1e+02 Score=24.25 Aligned_cols=47 Identities=15% Similarity=-0.056 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCC
Q 023071 147 LLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGN 194 (287)
Q Consensus 147 ~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn 194 (287)
..+.=.++|..++.++.|.+....+.++..+=...... .++..+.+|
T Consensus 233 n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~-alA~~f~~~ 279 (319)
T COG0385 233 NLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGA-ALAAAFFGN 279 (319)
T ss_pred HHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHHHH-HHHHhcCCC
Confidence 33344667888888888887777788877777666665 366666665
No 92
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=24.65 E-value=5.3e+02 Score=25.62 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCC-CChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Q 023071 108 LSKFSTFAIFIVSGLT-LRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQPQEF 167 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~-l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~~~~ 167 (287)
...-.++.+|+..|.. .+++|+.+.+ .+..++. .+...+.+=+.++.++++++.-|..
T Consensus 305 ~~~~lt~~lLvgiGv~~~~l~~l~~a~-t~~~vv~-~~~~Vl~~~~~a~~vG~l~g~YPvE 363 (414)
T PF03390_consen 305 FSKNLTWPLLVGIGVAYTDLNDLIAAF-TPQYVVI-VLATVLGAVIGAFLVGKLVGFYPVE 363 (414)
T ss_pred HHHHHHHHHHHHHHhhhCcHHHHHHHh-CHHHHHH-HHHHHHHHHHHHHHHHHHhCCChHH
Confidence 3444577788999999 9999999998 5655543 4444455557788899998887643
No 93
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=24.52 E-value=7.8e+02 Score=25.24 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=24.1
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhhcchhhhhccccchhHHHHHHHHHH
Q 023071 237 SLVLTLLIPLI-LGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSR 282 (287)
Q Consensus 237 ~L~~~vllPl~-lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~ 282 (287)
.+.+-..+|++ +|...+++.|+..+ |.++.+..+..+-+...+.
T Consensus 333 ~~gLG~~~Plll~~~~~~~~lpk~g~--wm~~~k~~~G~~ll~~~~~ 377 (571)
T PRK00293 333 LLALGMGLPLILITTFGNKLLPKSGP--WMNQVKTAFGFVLLALPVF 377 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCcc--HHHHHHHHHHHHHHHHHHH
Confidence 34444556665 55555566665555 7766666555544444443
No 94
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=23.93 E-value=6.7e+02 Score=24.28 Aligned_cols=104 Identities=10% Similarity=-0.009 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcC------ChhHHHHHHHhccCchhhhHH
Q 023071 111 FSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQ------PQEFVTGLALFSCMPTTLSSG 184 (287)
Q Consensus 111 ~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l------~~~~~~Glvl~~a~P~a~~s~ 184 (287)
+-.+++|+..|.-.|+.-+ +.||+..+.+...|+.+. ..+..+..++. +...+..+-+.+..=+..+-+
T Consensus 64 l~P~LIFlGIGAmtDFgpl---lanP~~~llGaaAQ~GiF--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If 138 (354)
T TIGR01109 64 IAPLLIFMGIGALTDFGPL---LANPRTLLLGAAAQFGIF--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIY 138 (354)
T ss_pred hHHHHHHHhccHHhhhHHH---HhChHHHHHHHHHHhhHH--HHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhh
Confidence 3455688889887666554 478999999999999876 44445544555 334455555555544433333
Q ss_pred HHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 023071 185 VALTHLAGGNSALALAMTII-SNLLGIMIVPFSISKFI 221 (287)
Q Consensus 185 V~~t~~agGn~ala~~~~~l-stlls~~~iPl~l~ll~ 221 (287)
+ +.+..-|.--+.....= =.-+.++.-|-.+.++.
T Consensus 139 ~--s~~lap~Llg~IaVAAYsYMaLvPiiqPpimklLt 174 (354)
T TIGR01109 139 L--SGKLAPELLAAIAVAAYSYMALVPIIQPPIMKALT 174 (354)
T ss_pred h--HhhhhhHHHHHHHHHHHHHHHHHhcccchHHHhhc
Confidence 2 33332232222222111 13455666777777775
No 95
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=22.65 E-value=5.8e+02 Score=23.11 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 151 PYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISK 219 (287)
Q Consensus 151 Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~l 219 (287)
-.++-.+.+.++.+...+.|+.+=.++-.-..+- .-+.-+-..+.+.....++-++..+..|++..+
T Consensus 158 a~~g~~ll~~~~i~~~~A~GlalG~aaHaiGTa~--a~e~~~~~Ga~ssLam~l~gi~ta~l~P~l~~l 224 (226)
T TIGR00659 158 TVFGPMVLRYFRVKNEIARGLLLGTSSHGLGTAR--CFELDSVAGAISSLSMVLCGIITSWIAPFLFHL 224 (226)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhHHHHHHHHHH--HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666788888899988766554433322 233333446666677777888888888987653
No 96
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=22.31 E-value=1.9e+02 Score=20.97 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Q 023071 231 TKQLFKSLVLTLLIPLILGKVLRESITGECL 261 (287)
Q Consensus 231 ~~~l~~~L~~~vllPl~lG~llr~~~~~~~~ 261 (287)
..+++.-+.+..++=+-+|.+.++++|..-+
T Consensus 3 i~DiiQii~l~AlI~~pLGyl~~~~~~r~~~ 33 (62)
T PF11120_consen 3 ISDIIQIIILCALIFFPLGYLARRWLPRIRR 33 (62)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 4455555555566666789999999888654
No 97
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=20.89 E-value=5.6e+02 Score=27.48 Aligned_cols=107 Identities=15% Similarity=-0.027 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHhccCchhhhHHHH
Q 023071 109 SKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKLILQVQLQP--QEFVTGLALFSCMPTTLSSGVA 186 (287)
Q Consensus 109 ~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~l~~l~~l~--~~~~~Glvl~~a~P~a~~s~V~ 186 (287)
..+.+|+-+...|++.+...+.+....-..+....+.+++..=..+ ....++ ..++.|.++.+=-=-......
T Consensus 312 ~~~llPl~~~~~G~k~di~~i~~~~~~~~~i~~~~~~K~l~t~~~s----l~~k~p~~~~l~l~~lm~~kgl~el~~~~- 386 (769)
T KOG1650|consen 312 SGLLLPLYFAISGLKTDISRINKWGALIRTILIFGAVKLLSTLGTS----LYCKLPLRDSLALGLLMSTKGLVELIVLN- 386 (769)
T ss_pred HHHHHHHHHHhhccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCchhHHHHHHHHHHhhhHHHHHHHH-
Confidence 3467788888999999999888622222222333333444332222 233333 445555444332212222221
Q ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023071 187 LTHLAGG-NSALALAMTIISNLLGIMIVPFSISKF 220 (287)
Q Consensus 187 ~t~~agG-n~ala~~~~~lstlls~~~iPl~l~ll 220 (287)
.....|. |.+-=..++...++-+.++.|+...++
T Consensus 387 ~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 387 TGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred HHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 1222222 233333445555666666677776666
No 98
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=20.53 E-value=72 Score=25.14 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHH
Q 023071 239 VLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSY 279 (287)
Q Consensus 239 ~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~ 279 (287)
+..+++=+.+|.+.|.+..++.-+ +.++....++.+...|
T Consensus 2 l~~l~~i~~iG~l~~~~~g~~l~~-~~e~ll~riP~v~~iY 41 (108)
T PF04367_consen 2 LILLLLIFLIGLLARNYFGKWLLN-WLERLLQRIPLVKSIY 41 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCchHHHH
Confidence 346677788899999887776544 6777666666655554
No 99
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=20.47 E-value=3.1e+02 Score=30.40 Aligned_cols=92 Identities=20% Similarity=0.377 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHH-------HHhcCChhHHHHHHHhc---cCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 023071 142 GLFSILLFTPYFSKLIL-------QVQLQPQEFVTGLALFS---CMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIM 211 (287)
Q Consensus 142 ~~~~~~vl~Plla~~l~-------~l~~l~~~~~~Glvl~~---a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~ 211 (287)
+++...+..-+++|.+. ..++++..+ .|+.+++ ++|=..++.+ .+++- ....|+....-|++.-+.
T Consensus 937 tFi~SIiwIsi~SyilV~~at~IG~vlGIse~V-mGlTfLA~GTSIPDlisSvi-vArkG--~gdMAVan~iGSNIFnIl 1012 (1096)
T TIGR00927 937 TFLGSIMWIAMFSYLMVWWAHQVGETIGISEEI-MGLTILAAGTSIPDLITSVI-VARKG--LGDMAVSSSVGSNIFDIT 1012 (1096)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcCCChhh-hhhhhhhhhcccHHHHHHHH-HHHcc--CCcceeeeccccchheee
Confidence 44444444444444443 345666443 4444443 4566556653 66654 444555555555554443
Q ss_pred ---HHHHHHHHHhhcCCceecCHHHHHHH
Q 023071 212 ---IVPFSISKFIAAGVGISVPTKQLFKS 237 (287)
Q Consensus 212 ---~iPl~l~ll~~~~~~v~i~~~~l~~~ 237 (287)
-+|.++..+......+.++-..++..
T Consensus 1013 lgLGlPWlI~~li~g~~pV~V~S~GL~~s 1041 (1096)
T TIGR00927 1013 VGLPVPWLLFSLINGLQPVPVSSNGLFCA 1041 (1096)
T ss_pred eeccHHHHHHHHhccCcceeecCccHHHH
Confidence 35655555543234455555444433
No 100
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.40 E-value=7.8e+02 Score=23.72 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhhcCcccc-chhhh--c-hhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHHHHHHHHHHHHHH
Q 023071 81 FLPLALIGGVAFGFANPSLGC-LADKY--Q-LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLFSILLFTPYFSKL 156 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~-~~~~~--~-l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~~~~vl~Plla~~ 156 (287)
.++.++++|+++-........ ..+.. + ++...+-+.....-++++..++.+.. ...+..++.+.+++=+.++.
T Consensus 249 ~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a---~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 249 LFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYA---LPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred hHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 445667777665544432211 11111 1 33433333333444577777777543 44555667777777666655
Q ss_pred HH-HHhcCChhHHH---HH--HHhccCchhhhHHHHHHHHcC
Q 023071 157 IL-QVQLQPQEFVT---GL--ALFSCMPTTLSSGVALTHLAG 192 (287)
Q Consensus 157 l~-~l~~l~~~~~~---Gl--vl~~a~P~a~~s~V~~t~~ag 192 (287)
+. +.++-|-+-+. |. .-+++.|++.+.-=+.+++||
T Consensus 326 v~fr~~gkdydaavm~~G~~G~glGatp~a~anm~~v~~~yg 367 (368)
T PF03616_consen 326 VTFRVMGKDYDAAVMSAGFCGFGLGATPNAMANMQAVTEKYG 367 (368)
T ss_pred HhhhhhCCChhHHHHhhhhhccCCCccHHHHHHHHHHHHhhC
Confidence 54 56665532221 22 234677877765445666665
No 101
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=20.28 E-value=2.8e+02 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhcCccccchhhh-----c-hhHHHHHHHHHHh
Q 023071 82 LPLALIGGVAFGFANPSLGCLADKY-----Q-LSKFSTFAIFIVS 120 (287)
Q Consensus 82 l~lail~gi~lg~~~P~~~~~~~~~-----~-l~~~~l~lim~~~ 120 (287)
..+++++|+++|+++|....++++. . +.-..+|++++++
T Consensus 13 iligl~lGi~~G~~~~~~~~~l~~iG~iFl~lLkm~VvPLVf~Si 57 (428)
T PRK01663 13 VLVAIIIGILLGHFYPELGAQMKPLGDGFIKLIKMIIAPIIFCTV 57 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999988655554432 1 2335567766544
Done!