Query 023071
Match_columns 287
No_of_seqs 201 out of 1439
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 100.0 7E-32 2.4E-36 253.6 23.6 210 65-282 4-213 (332)
2 3zux_A Transporter, ASBTNM; tr 42.8 1.9E+02 0.0064 26.0 11.9 21 234-255 293-313 (332)
3 2kv5_A FST, putative uncharact 35.2 13 0.00046 22.5 1.0 19 237-255 3-21 (33)
4 2oar_A Large-conductance mecha 20.5 2E+02 0.007 23.8 6.0 92 61-159 16-115 (174)
5 2nwl_A GLTPH, glutamate sympor 12.7 2.1E+02 0.0072 26.8 4.8 17 82-98 16-32 (422)
6 1zcd_A Na(+)/H(+) antiporter 1 9.2 2.3E+02 0.0079 26.4 3.7 104 108-215 63-173 (388)
7 2ls4_A High affinity copper up 8.5 1.2E+02 0.004 17.3 0.0 16 81-96 4-19 (26)
8 1p58_D Envelope protein M; fla 5.9 6E+02 0.02 17.9 3.7 29 65-95 24-52 (75)
9 1zcd_A Na(+)/H(+) antiporter 1 5.3 3E+02 0.01 25.6 2.3 44 84-127 225-279 (388)
10 2jyp_A Aragonite protein AP7; 5.1 3.6E+02 0.012 15.9 1.7 16 34-49 4-20 (36)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=100.00 E-value=7e-32 Score=253.57 Aligned_cols=210 Identities=21% Similarity=0.270 Sum_probs=187.6
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhhchhHHHHHHH
Q 023071 65 KGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAEAWPVGIFGLF 144 (287)
Q Consensus 65 ~~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~~l~~~~ 144 (287)
+.|+..+++.+|+.|+ +++++++++++|++.|+.+.+.+.+ .+..++++||.+|++++.+|+++.+++||.+..+++
T Consensus 4 ~~m~~l~~~~~~l~~~-~~l~i~~~~~lg~~~P~~~~~~~~~--i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~ 80 (332)
T 3zux_A 4 ASMNILSKISSFIGKT-FSLWAALFAAAAFFAPDTFKWAGPY--IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVI 80 (332)
T ss_dssp ---CHHHHHHHHHHHT-HHHHHHHHHHHHHHCGGGTGGGGGG--HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcchhhhhhHHH--HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHH
Confidence 4567889999999655 6799999999999999998887753 456889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChhHHHHHHHhccCchhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 023071 145 SILLFTPYFSKLILQVQLQPQEFVTGLALFSCMPTTLSSGVALTHLAGGNSALALAMTIISNLLGIMIVPFSISKFIAAG 224 (287)
Q Consensus 145 ~~~vl~Plla~~l~~l~~l~~~~~~Glvl~~a~P~a~~s~V~~t~~agGn~ala~~~~~lstlls~~~iPl~l~ll~~~~ 224 (287)
.|++++|+++++++++++++++++.|+++++||||+.+|++ ||+++|||.++++.++.+||+++++++|+++.++. |
T Consensus 81 ~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v-~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~--g 157 (332)
T 3zux_A 81 AQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA--G 157 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999997 4
Q ss_pred CceecCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhccccchhHHHHHHHHHH
Q 023071 225 VGISVPTKQLFKSLVLTLLIPLILGKVLRESITGECLNIFIRPQNFLFFLFSMSYVSR 282 (287)
Q Consensus 225 ~~v~i~~~~l~~~L~~~vllPl~lG~llr~~~~~~~~~~~~~~~~~~~s~i~~~~v~~ 282 (287)
+.+++|+.+++.+++..+++|+++|+++|++.|++.+ +.++..+.++.+++.+++.
T Consensus 158 ~~~~v~~~~~~~~l~~~vllP~~lG~l~r~~~~~~~~--~~~~~l~~~s~~~illiv~ 213 (332)
T 3zux_A 158 EMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTE--KLTDALPLVSVAAIVLIIG 213 (332)
T ss_dssp GGGHHHHHHHHHHHHHHTHHHHHHHHHHHHHHGGGGH--HHHTTHHHHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhHHHHHHHHHHhH
Confidence 5688999999999999999999999999999999876 5666666677666665543
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=42.78 E-value=1.9e+02 Score=26.00 Aligned_cols=21 Identities=10% Similarity=-0.004 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023071 234 LFKSLVLTLLIPLILGKVLRES 255 (287)
Q Consensus 234 l~~~L~~~vllPl~lG~llr~~ 255 (287)
++..+...+. ...++...|+.
T Consensus 293 ~iy~~~q~i~-~~~la~~~~~~ 313 (332)
T 3zux_A 293 ALFSVWHNIS-GSLLATYWAAK 313 (332)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHcC
Confidence 3344443333 33344444443
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=35.20 E-value=13 Score=22.51 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023071 237 SLVLTLLIPLILGKVLRES 255 (287)
Q Consensus 237 ~L~~~vllPl~lG~llr~~ 255 (287)
+++..++.|+++|.+++.+
T Consensus 3 ~i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999865
No 4
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=20.46 E-value=2e+02 Score=23.82 Aligned_cols=92 Identities=14% Similarity=0.093 Sum_probs=45.4
Q ss_pred ccchhhhhhHHHHHHHHHhhHHHHHHHHHHHHHhhcCccccchhhhchhHHHHHHHHHHhcCCCChhHHHHhhh---c--
Q 023071 61 FASSKGLNWAKPLLKIAADNFLPLALIGGVAFGFANPSLGCLADKYQLSKFSTFAIFIVSGLTLRSGEIGAAAE---A-- 135 (287)
Q Consensus 61 ~~~~~~~~~~~~l~~~l~~n~l~lail~gi~lg~~~P~~~~~~~~~~l~~~~l~lim~~~Gl~l~~~~l~~~~~---~-- 135 (287)
...+.+++.++.+.+|+.+.- ++=+.+|+++|-.+-.. .+.+ +..+..|++=+. | +.+++++.-.++ .
T Consensus 16 ~~~~~~~~mlkeFKeFi~RGN-ViDLAVgVIIGaAF~~I---VtSl-V~dIImPlIgl~-G-g~dfs~l~~~l~~~~~~~ 88 (174)
T 2oar_A 16 HIDDDDKHMLKGFKEFLARGN-IVDLAVAVVIGTAFTAL---VTKF-TDSIITPLINRI-G-VNAQSDVGILRIGIGGGQ 88 (174)
T ss_dssp --------CHHHHHHHHHSCH-HHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHH-C-CCCEEECCCCTTTCCSCE
T ss_pred chHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHH---HHHH-HHHhHHHHHHhh-C-CCCcccceEEEecCCCce
Confidence 344556778999999998643 47777788887554322 2222 344445543322 3 234443321110 0
Q ss_pred --hhHHHHHHHHHHHHHHHHH-HHHHH
Q 023071 136 --WPVGIFGLFSILLFTPYFS-KLILQ 159 (287)
Q Consensus 136 --~~~~l~~~~~~~vl~Plla-~~l~~ 159 (287)
.-..++..+++|+++-++. |.+.+
T Consensus 89 ~i~yG~Fi~avInFlIIA~vIYFliVk 115 (174)
T 2oar_A 89 TIDLNVLLSAAINFFLIAFAVYFLVVL 115 (174)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123456778888887777 43433
No 5
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=12.71 E-value=2.1e+02 Score=26.80 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhcCc
Q 023071 82 LPLALIGGVAFGFANPS 98 (287)
Q Consensus 82 l~lail~gi~lg~~~P~ 98 (287)
.++++++|+++|+..|.
T Consensus 16 ili~lvlGi~~G~~~~~ 32 (422)
T 2nwl_A 16 ILIGLILGAIVGLILGH 32 (422)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56899999999998874
No 6
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=9.25 E-value=2.3e+02 Score=26.37 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHhhhchhH--HHHHHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHhccCchhhhHH
Q 023071 108 LSKFSTFAIFIVSGLTLRSGEIGAAAEAWPV--GIFGLFSILLFTPYFSKLILQVQLQ-PQEFVTGLALFSCMPTTLSSG 184 (287)
Q Consensus 108 l~~~~l~lim~~~Gl~l~~~~l~~~~~~~~~--~l~~~~~~~vl~Plla~~l~~l~~l-~~~~~~Glvl~~a~P~a~~s~ 184 (287)
+++....+.||..|+.++.|.+...++++|. .-.....-=++.|.+.|. .++. +++...|-.+..+.-.+.+..
T Consensus 63 indglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~---~~~~~~~~~~~gw~ip~ATdIAfal~ 139 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL---AFNYADPITREGWAIPAATDIAFALG 139 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG---GGCCSSTTHHHHTSSSSCCCHHHHHH
T ss_pred HhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH---HHhcCChhhhhhhHHHHHHHHHHHHH
Confidence 4566677789999999999877444444333 112233334556777653 2332 233334444444444433433
Q ss_pred HHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHH
Q 023071 185 VALTHLAGGN----SALALAMTIISNLLGIMIVPF 215 (287)
Q Consensus 185 V~~t~~agGn----~ala~~~~~lstlls~~~iPl 215 (287)
+ +....+.. -...+...+++.+.+++++-+
T Consensus 140 v-L~~lg~~~p~~l~~flLalAvvDDl~aiivIAv 173 (388)
T 1zcd_A 140 V-LALLGSRVPLALKIFLMALAIIDDLGAIIIIAL 173 (388)
T ss_dssp H-HHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 44333332 156667777778877776654
No 7
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=8.48 E-value=1.2e+02 Score=17.29 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 023071 81 FLPLALIGGVAFGFAN 96 (287)
Q Consensus 81 ~l~lail~gi~lg~~~ 96 (287)
++.+++++|..+|++.
T Consensus 4 ~l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFL 19 (26)
Confidence 4568888888888764
No 8
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=5.89 E-value=6e+02 Score=17.90 Aligned_cols=29 Identities=3% Similarity=0.083 Sum_probs=18.6
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 023071 65 KGLNWAKPLLKIAADNFLPLALIGGVAFGFA 95 (287)
Q Consensus 65 ~~~~~~~~l~~~l~~n~l~lail~gi~lg~~ 95 (287)
+.++...|+=+|+.+|+. .++++. ++++.
T Consensus 24 ~~~~~l~kvE~WilrNp~-~al~a~-~~~w~ 52 (75)
T 1p58_D 24 GAWKHAQRIETWILRHPG-FTIMAA-ILAYT 52 (75)
T ss_pred hHHHHHHHHHHHHHHChH-HHHHHH-HHHHH
Confidence 345556677789999986 555555 45543
No 9
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=5.26 E-value=3e+02 Score=25.56 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhcCccc----cchhhh----c--hhHHHHHHH-HHHhcCCCChh
Q 023071 84 LALIGGVAFGFANPSLG----CLADKY----Q--LSKFSTFAI-FIVSGLTLRSG 127 (287)
Q Consensus 84 lail~gi~lg~~~P~~~----~~~~~~----~--l~~~~l~li-m~~~Gl~l~~~ 127 (287)
-+++.|++.|+..|... ...+.. + .....+|+- |...|++++..
T Consensus 225 Hatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~ 279 (388)
T 1zcd_A 225 HATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGV 279 (388)
T ss_dssp HHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSS
T ss_pred cHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeccc
Confidence 45666777777777632 111111 1 122345655 77888888764
No 10
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=5.08 E-value=3.6e+02 Score=15.92 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=10.3
Q ss_pred ccCCCcccCC-CCCccc
Q 023071 34 RFSPFVTFSP-GRSISR 49 (287)
Q Consensus 34 ~~~~~~~~~~-~~~~~~ 49 (287)
+|-+++..|. |-+..-
T Consensus 4 sfrrpfhecalcysitd 20 (36)
T 2jyp_A 4 SFRRPFHECALCYSITD 20 (36)
T ss_dssp SSTTTTTCCSSSTTTTT
T ss_pred cccCccchheeEEeecC
Confidence 3557788877 666553
Done!