Query 023071
Match_columns 287
No_of_seqs 201 out of 1439
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 15:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023071.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023071hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nwwa1 f.49.1.1 (A:12-416) Pr 6.4 5.1E+02 0.037 21.2 7.0 17 83-99 6-22 (405)
2 d2ey4e1 g.41.16.1 (E:4-55) Rib 4.5 2.9E+02 0.021 16.7 2.8 23 39-61 14-37 (52)
3 d2e74d2 f.23.12.1 (D:12-45) IS 3.8 2.8E+02 0.02 15.0 2.0 20 80-99 9-28 (34)
4 d2pila_ d.24.1.1 (A:) Pilin Gc 3.6 1.8E+02 0.013 19.6 1.5 25 81-105 6-30 (158)
5 d1ppjg_ f.23.13.1 (G:) Ubiquin 3.0 4.9E+02 0.036 16.6 3.1 25 237-261 43-67 (75)
6 d1chca_ g.44.1.1 (A:) Immediat 2.6 4.1E+02 0.03 15.8 2.3 12 39-50 40-52 (68)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 2.6 1.1E+03 0.079 17.7 16.3 35 187-221 368-404 (447)
8 d1lpba2 g.3.10.1 (A:45-90) (Pr 2.3 2.5E+02 0.018 16.3 0.7 9 40-48 15-23 (46)
9 d1a34a_ b.121.7.1 (A:) STMV co 2.3 2.3E+02 0.017 19.7 0.6 26 16-41 12-37 (147)
10 d2apob1 g.41.16.1 (B:403-457) 2.2 7.3E+02 0.053 14.8 3.1 20 39-58 16-36 (55)
No 1
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=6.42 E-value=5.1e+02 Score=21.22 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhcCcc
Q 023071 83 PLALIGGVAFGFANPSL 99 (287)
Q Consensus 83 ~lail~gi~lg~~~P~~ 99 (287)
++++++|+++|+..+..
T Consensus 6 li~lv~Gi~~G~~~~~~ 22 (405)
T d2nwwa1 6 LIGLILGAIVGLILGHY 22 (405)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccc
Confidence 47888888888876543
No 2
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.53 E-value=2.9e+02 Score=16.66 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=14.2
Q ss_pred cccCC-CCCccccccccCCCCccc
Q 023071 39 VTFSP-GRSISRPIRACRPSDQDF 61 (287)
Q Consensus 39 ~~~~~-~~~~~~~~~~~~~~~~~~ 61 (287)
...|| |........+.-.|-++.
T Consensus 14 ~~~CP~CG~~t~~a~ParfSPeDk 37 (52)
T d2ey4e1 14 KEVCPVCGEKTKVAHPPRFSPEDP 37 (52)
T ss_dssp SSBCTTTCCBCEESSCCCCCTTCT
T ss_pred cccCcCCCCcccccCCCCCCCCcc
Confidence 45687 777776555555555333
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.85 E-value=2.8e+02 Score=15.00 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHhhcCcc
Q 023071 80 NFLPLALIGGVAFGFANPSL 99 (287)
Q Consensus 80 n~l~lail~gi~lg~~~P~~ 99 (287)
|.+-.+-+.|+.+|.++|..
T Consensus 9 nlltfgt~tg~alg~lypvv 28 (34)
T d2e74d2 9 NLLAFGTVTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHhhhhhHH
Confidence 55567778888888776643
No 4
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=3.62 E-value=1.8e+02 Score=19.61 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhcCccccchhh
Q 023071 81 FLPLALIGGVAFGFANPSLGCLADK 105 (287)
Q Consensus 81 ~l~lail~gi~lg~~~P~~~~~~~~ 105 (287)
.+++..++||+.++..|....+.+.
T Consensus 6 LlVViaIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 6 LMIVIAIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999888887665443
No 5
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.00 E-value=4.9e+02 Score=16.62 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcch
Q 023071 237 SLVLTLLIPLILGKVLRESITGECL 261 (287)
Q Consensus 237 ~L~~~vllPl~lG~llr~~~~~~~~ 261 (287)
+=++.++.|++++.++-.|..+..+
T Consensus 43 ~~~l~v~PPfi~~Y~iy~W~~~~~~ 67 (75)
T d1ppjg_ 43 ACILRVAPPFVAFYLVYTWGTQEFE 67 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhceEEcCHHHHHHHHHHHHHHHHH
Confidence 3356889999999999887665443
No 6
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=2.63 E-value=4.1e+02 Score=15.84 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=7.9
Q ss_pred cccCC-CCCcccc
Q 023071 39 VTFSP-GRSISRP 50 (287)
Q Consensus 39 ~~~~~-~~~~~~~ 50 (287)
..+|| ||....-
T Consensus 40 ~~~CP~CR~~i~~ 52 (68)
T d1chca_ 40 NPTCPLCKVPVES 52 (68)
T ss_dssp SCSTTTTCCCCCC
T ss_pred CCcCCCCCcchHh
Confidence 45799 8875443
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.55 E-value=1.1e+03 Score=17.72 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=17.9
Q ss_pred HHHHcCCCHH-HHHHH-HHHHHHHHHHHHHHHHHHHh
Q 023071 187 LTHLAGGNSA-LALAM-TIISNLLGIMIVPFSISKFI 221 (287)
Q Consensus 187 ~t~~agGn~a-la~~~-~~lstlls~~~iPl~l~ll~ 221 (287)
..+....+.. .+... ..+..+.+.+..|+....+.
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~ 404 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 404 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555432 22222 23445556666777665554
No 8
>d1lpba2 g.3.10.1 (A:45-90) (Pro)colipase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=2.34 E-value=2.5e+02 Score=16.31 Aligned_cols=9 Identities=11% Similarity=-0.215 Sum_probs=6.2
Q ss_pred ccCCCCCcc
Q 023071 40 TFSPGRSIS 48 (287)
Q Consensus 40 ~~~~~~~~~ 48 (287)
-+|||+++-
T Consensus 15 ykCPCErGL 23 (46)
T d1lpba2 15 YKCPCERGL 23 (46)
T ss_dssp SSCCBCTTE
T ss_pred EeCccccCc
Confidence 468887764
No 9
>d1a34a_ b.121.7.1 (A:) STMV coat protein {Satellite tobacco mosaic virus [TaxId: 12881]}
Probab=2.31 E-value=2.3e+02 Score=19.72 Aligned_cols=26 Identities=15% Similarity=-0.100 Sum_probs=22.3
Q ss_pred CCCCCcccCCCCCCCCccccCCCccc
Q 023071 16 KMLSSWHRNSHFRASGSLRFSPFVTF 41 (287)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (287)
.++|.++-+|.|.|..|+-|..+.++
T Consensus 12 ragsypkvnptptwvraipfevsvqs 37 (147)
T d1a34a_ 12 RAGSYPKVNPTPTWVRAIPFEVSVQS 37 (147)
T ss_dssp CCCSCCCCCSSCCEEEEEEEEEECCT
T ss_pred eccCCCCcCCCcceEEeeeeEEEeec
Confidence 57889999999999999888777776
No 10
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.20 E-value=7.3e+02 Score=14.80 Aligned_cols=20 Identities=10% Similarity=-0.109 Sum_probs=12.6
Q ss_pred cccCC-CCCccccccccCCCC
Q 023071 39 VTFSP-GRSISRPIRACRPSD 58 (287)
Q Consensus 39 ~~~~~-~~~~~~~~~~~~~~~ 58 (287)
...|| |........+.-.|-
T Consensus 16 ~~~CP~CG~~t~~a~P~rfSP 36 (55)
T d2apob1 16 KEICPKCGEKTVIPKPPKFSL 36 (55)
T ss_dssp SSBCSSSCSBCBCCCCCCCCT
T ss_pred cccCcCCCCccCccCCCCCCC
Confidence 56677 777766555555555
Done!