BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023072
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7C|A Chain A, Biophysical Studies Of Lipid Interacting Regions Of Dgd2
          In Arabidopsis Thaliana
          Length = 19

 Score = 38.5 bits (88), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/16 (93%), Positives = 15/16 (93%)

Query: 48 FAKGAYYIGKMVWSKG 63
          F KGAYYIGKMVWSKG
Sbjct: 3  FTKGAYYIGKMVWSKG 18


>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
 pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
          Length = 395

 Score = 29.6 bits (65), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 42  QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 77
           ++GT    +   Y+ K +W   Y+ LL+ LDD+++E
Sbjct: 271 EDGTELEQRAVEYV-KTIWCTAYRSLLKTLDDYKEE 305


>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase In Complexed With Ubiquinone
 pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
 pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
           Ubiquinone Oxidoreductase
          Length = 584

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 78  LAGLEVDLYGN-----GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD 132
           L GL ++ +GN     G   + + E AE L   V VYPG   A+++FH+       +T D
Sbjct: 128 LPGLPMNNHGNYVVRLGHLVSWMGEQAEALG--VEVYPGYAAAEILFHEDGSVKGIATND 185

Query: 133 VVC-------TTTAEALAM-GKIVV----CANHPSNDFFKQF 162
           V         TT    L +  K+ +    C  H +   +K+F
Sbjct: 186 VGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKF 227


>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
 pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
 pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
          Length = 261

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 13  QEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYI------GKMVWSKGYKE 66
           +E+   ++C      PK+L++  K  E    G   FAK + YI            +G  +
Sbjct: 92  EEFLEEVLCP-----PKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLK 146

Query: 67  LLELLDDHQKELAGLEVD 84
            L+ LD++       E+D
Sbjct: 147 TLQKLDEYLNSPLPDEID 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,909,147
Number of Sequences: 62578
Number of extensions: 298542
Number of successful extensions: 782
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 780
Number of HSP's gapped (non-prelim): 9
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)