Query 023072
Match_columns 287
No_of_seqs 255 out of 2170
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02846 digalactosyldiacylgly 100.0 2E-49 4.4E-54 365.4 28.3 282 2-283 181-462 (462)
2 PLN02501 digalactosyldiacylgly 100.0 5.4E-49 1.2E-53 368.3 29.2 285 2-286 499-789 (794)
3 PRK15427 colanic acid biosynth 100.0 2.3E-32 5E-37 252.3 19.3 203 2-211 175-404 (406)
4 TIGR02468 sucrsPsyn_pln sucros 100.0 5.9E-32 1.3E-36 265.9 19.8 194 19-213 428-671 (1050)
5 PRK15484 lipopolysaccharide 1, 100.0 2E-31 4.3E-36 244.2 21.8 210 2-211 140-376 (380)
6 cd03796 GT1_PIG-A_like This fa 100.0 6.4E-31 1.4E-35 242.2 18.9 206 2-214 145-369 (398)
7 TIGR03088 stp2 sugar transfera 100.0 2.2E-30 4.8E-35 236.2 21.2 212 1-212 136-372 (374)
8 TIGR03449 mycothiol_MshA UDP-N 100.0 1.5E-29 3.3E-34 233.1 20.7 211 2-212 164-401 (405)
9 PRK15179 Vi polysaccharide bio 100.0 2.5E-29 5.4E-34 242.7 22.1 209 4-212 461-693 (694)
10 cd03813 GT1_like_3 This family 100.0 1E-29 2.3E-34 239.2 18.8 203 2-211 245-475 (475)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 1.5E-29 3.4E-34 235.9 18.8 210 2-211 185-439 (439)
12 TIGR02918 accessory Sec system 100.0 2.5E-29 5.4E-34 236.6 20.3 199 2-211 271-498 (500)
13 cd03818 GT1_ExpC_like This fam 100.0 1.8E-29 4E-34 232.3 18.8 206 2-207 157-395 (396)
14 PRK15490 Vi polysaccharide bio 100.0 2.9E-29 6.4E-34 233.2 19.5 198 15-212 359-575 (578)
15 PRK00654 glgA glycogen synthas 100.0 4E-29 8.7E-34 234.7 20.2 210 2-213 198-463 (466)
16 cd04962 GT1_like_5 This family 100.0 1.4E-28 3E-33 223.4 21.3 210 1-211 142-369 (371)
17 PLN02871 UDP-sulfoquinovose:DA 100.0 5.7E-29 1.2E-33 233.7 19.2 207 2-214 206-436 (465)
18 cd05844 GT1_like_7 Glycosyltra 100.0 1.1E-28 2.4E-33 223.8 18.4 198 2-208 143-366 (367)
19 TIGR02095 glgA glycogen/starch 100.0 1.8E-28 3.9E-33 230.8 20.0 209 2-212 206-472 (473)
20 PHA01630 putative group 1 glyc 100.0 2.1E-28 4.4E-33 219.6 18.6 195 2-211 95-329 (331)
21 PRK10307 putative glycosyl tra 100.0 2E-28 4.4E-33 226.4 19.2 210 2-214 172-409 (412)
22 PLN02939 transferase, transfer 100.0 3.1E-28 6.8E-33 236.7 20.8 211 2-214 694-968 (977)
23 cd03805 GT1_ALG2_like This fam 100.0 2.4E-28 5.3E-33 223.8 18.6 206 1-206 154-392 (392)
24 TIGR02470 sucr_synth sucrose s 100.0 3.7E-28 8.1E-33 234.8 20.3 196 16-211 495-746 (784)
25 KOG1111 N-acetylglucosaminyltr 100.0 1.8E-28 3.8E-33 212.2 15.7 207 2-215 146-369 (426)
26 PRK14099 glycogen synthase; Pr 100.0 4.4E-28 9.5E-33 228.0 19.2 211 2-214 210-480 (485)
27 PRK14098 glycogen synthase; Pr 100.0 5.2E-28 1.1E-32 227.7 19.8 210 2-213 221-486 (489)
28 TIGR02149 glgA_Coryne glycogen 100.0 8.3E-28 1.8E-32 220.0 19.7 208 2-212 145-386 (388)
29 PLN02949 transferase, transfer 100.0 1.2E-27 2.6E-32 223.3 20.7 206 1-213 220-457 (463)
30 cd03792 GT1_Trehalose_phosphor 100.0 1.7E-27 3.8E-32 217.3 20.1 210 2-212 136-371 (372)
31 PLN02316 synthase/transferase 100.0 2.7E-27 5.9E-32 233.7 22.7 210 2-213 762-1034(1036)
32 TIGR03087 stp1 sugar transfera 100.0 1.3E-27 2.9E-32 220.0 18.9 203 2-211 173-395 (397)
33 PRK09922 UDP-D-galactose:(gluc 100.0 2.3E-27 4.9E-32 215.7 20.1 202 1-213 133-356 (359)
34 cd03802 GT1_AviGT4_like This f 100.0 2.5E-27 5.5E-32 211.9 19.8 194 2-211 132-335 (335)
35 cd04946 GT1_AmsK_like This fam 100.0 2.6E-27 5.6E-32 218.8 19.1 197 2-207 184-406 (407)
36 cd03806 GT1_ALG11_like This fa 100.0 1.9E-27 4E-32 220.5 18.0 196 1-203 189-417 (419)
37 cd03791 GT1_Glycogen_synthase_ 100.0 3.6E-27 7.9E-32 222.0 20.2 208 2-211 211-475 (476)
38 PLN00142 sucrose synthase 100.0 2E-27 4.3E-32 229.9 18.7 196 17-212 519-770 (815)
39 cd04949 GT1_gtfA_like This fam 100.0 4E-27 8.6E-32 214.5 17.9 197 2-206 158-372 (372)
40 cd03814 GT1_like_2 This family 99.9 1.4E-26 3E-31 208.0 19.7 205 2-211 145-364 (364)
41 cd03800 GT1_Sucrose_synthase T 99.9 1.4E-26 3.1E-31 211.8 19.9 206 2-207 164-397 (398)
42 cd03820 GT1_amsD_like This fam 99.9 1.2E-26 2.6E-31 206.0 18.7 196 2-207 136-347 (348)
43 cd03812 GT1_CapH_like This fam 99.9 2.4E-26 5.3E-31 207.3 20.8 186 2-187 138-334 (358)
44 cd04951 GT1_WbdM_like This fam 99.9 3.3E-26 7.2E-31 206.3 20.9 208 2-211 131-359 (360)
45 cd03821 GT1_Bme6_like This fam 99.9 2.4E-26 5.3E-31 206.3 19.4 205 2-207 150-374 (375)
46 cd03822 GT1_ecORF704_like This 99.9 3E-26 6.5E-31 206.2 19.7 208 1-211 134-366 (366)
47 cd03799 GT1_amsK_like This is 99.9 2.2E-26 4.7E-31 207.1 17.9 197 2-205 131-354 (355)
48 cd03807 GT1_WbnK_like This fam 99.9 4.7E-26 1E-30 203.7 20.0 208 2-211 137-365 (365)
49 cd04955 GT1_like_6 This family 99.9 2.7E-26 5.8E-31 207.3 18.4 201 2-211 144-363 (363)
50 cd03816 GT1_ALG1_like This fam 99.9 3.8E-26 8.2E-31 211.6 19.4 205 2-207 161-411 (415)
51 cd03801 GT1_YqgM_like This fam 99.9 1E-25 2.2E-30 200.8 20.2 209 2-211 145-374 (374)
52 cd03798 GT1_wlbH_like This fam 99.9 1.4E-25 3.1E-30 200.7 21.0 210 1-211 148-375 (377)
53 cd03804 GT1_wbaZ_like This fam 99.9 6.9E-26 1.5E-30 204.9 18.8 185 2-206 154-350 (351)
54 cd03819 GT1_WavL_like This fam 99.9 7E-26 1.5E-30 204.2 17.5 200 2-201 125-354 (355)
55 PHA01633 putative glycosyl tra 99.9 3.3E-25 7.1E-30 197.6 21.1 197 3-208 94-335 (335)
56 PRK10125 putative glycosyl tra 99.9 1.2E-25 2.7E-30 207.2 18.0 194 2-211 191-403 (405)
57 cd03795 GT1_like_4 This family 99.9 2.2E-25 4.7E-30 200.7 17.7 196 2-202 138-356 (357)
58 cd03823 GT1_ExpE7_like This fa 99.9 3.1E-25 6.7E-30 198.7 18.3 199 3-211 145-358 (359)
59 cd03825 GT1_wcfI_like This fam 99.9 1E-24 2.2E-29 196.9 20.3 205 3-212 137-364 (365)
60 cd03808 GT1_cap1E_like This fa 99.9 6.5E-25 1.4E-29 195.6 18.8 199 2-207 139-358 (359)
61 cd03817 GT1_UGDG_like This fam 99.9 1.4E-24 3E-29 195.1 20.7 207 2-211 149-372 (374)
62 cd03794 GT1_wbuB_like This fam 99.9 6.1E-25 1.3E-29 198.0 18.1 204 2-206 166-393 (394)
63 cd03809 GT1_mtfB_like This fam 99.9 2.6E-25 5.6E-30 200.1 14.6 204 2-208 141-365 (365)
64 PLN02275 transferase, transfer 99.9 8E-25 1.7E-29 199.9 16.4 176 2-182 166-371 (371)
65 cd03811 GT1_WabH_like This fam 99.9 7.8E-24 1.7E-28 188.0 19.6 182 2-185 136-333 (353)
66 PF00534 Glycos_transf_1: Glyc 99.9 1.9E-23 4E-28 170.2 12.9 139 49-187 15-161 (172)
67 cd03788 GT1_TPS Trehalose-6-Ph 99.9 2.1E-22 4.5E-27 188.6 11.9 189 18-209 227-458 (460)
68 cd04950 GT1_like_1 Glycosyltra 99.9 5.1E-21 1.1E-25 175.0 17.6 198 2-211 154-370 (373)
69 TIGR02400 trehalose_OtsA alpha 99.9 2.4E-21 5.2E-26 180.5 15.5 190 18-210 222-454 (456)
70 cd03793 GT1_Glycogen_synthase_ 99.8 5.1E-20 1.1E-24 171.9 18.0 98 117-214 470-588 (590)
71 PLN03063 alpha,alpha-trehalose 99.8 1.1E-19 2.4E-24 179.3 13.4 195 18-214 242-479 (797)
72 PRK05749 3-deoxy-D-manno-octul 99.8 6.4E-19 1.4E-23 163.8 13.8 207 2-211 179-418 (425)
73 PRK14501 putative bifunctional 99.8 7.7E-19 1.7E-23 173.0 11.6 193 19-214 229-464 (726)
74 PLN02605 monogalactosyldiacylg 99.8 1E-17 2.2E-22 153.7 16.8 202 2-209 151-378 (382)
75 PF13692 Glyco_trans_1_4: Glyc 99.8 1.3E-18 2.9E-23 135.9 8.7 129 51-184 4-135 (135)
76 COG0438 RfaG Glycosyltransfera 99.8 6.3E-17 1.4E-21 142.5 19.9 205 2-212 151-376 (381)
77 KOG0853 Glycosyltransferase [C 99.8 1.1E-17 2.3E-22 153.6 14.0 210 2-212 210-467 (495)
78 cd03785 GT1_MurG MurG is an N- 99.7 3.5E-17 7.7E-22 147.8 14.8 176 2-187 135-327 (350)
79 PRK13609 diacylglycerol glucos 99.7 8.7E-17 1.9E-21 147.3 17.1 204 2-213 148-372 (380)
80 cd01635 Glycosyltransferase_GT 99.7 7.2E-17 1.6E-21 135.5 14.0 117 52-168 107-229 (229)
81 COG0297 GlgA Glycogen synthase 99.7 1.4E-16 3E-21 147.9 17.0 195 18-214 241-479 (487)
82 PRK00726 murG undecaprenyldiph 99.7 1.5E-16 3.2E-21 144.5 14.7 198 2-210 137-355 (357)
83 PRK13608 diacylglycerol glucos 99.7 3.5E-16 7.5E-21 144.0 16.5 203 2-212 148-371 (391)
84 TIGR01133 murG undecaprenyldip 99.6 3.5E-15 7.6E-20 134.7 15.0 179 2-193 136-332 (348)
85 TIGR02398 gluc_glyc_Psyn gluco 99.6 4.1E-15 8.8E-20 138.7 13.3 165 20-187 250-451 (487)
86 TIGR03713 acc_sec_asp1 accesso 99.6 1.2E-14 2.5E-19 137.5 14.3 155 51-209 321-518 (519)
87 TIGR00236 wecB UDP-N-acetylglu 99.6 1.3E-14 2.9E-19 132.1 12.5 201 2-210 142-365 (365)
88 PRK09814 beta-1,6-galactofuran 99.6 2.8E-14 6.1E-19 128.6 11.9 155 1-182 123-298 (333)
89 KOG1387 Glycosyltransferase [C 99.5 1.8E-13 3.9E-18 118.8 15.3 178 2-187 223-427 (465)
90 cd03786 GT1_UDP-GlcNAc_2-Epime 99.5 9E-14 2E-18 126.3 11.4 178 2-187 142-340 (363)
91 PLN03064 alpha,alpha-trehalose 99.5 1.2E-13 2.5E-18 136.8 12.2 192 20-213 328-562 (934)
92 PRK00025 lpxB lipid-A-disaccha 99.4 2.6E-12 5.6E-17 117.6 12.6 179 2-187 135-344 (380)
93 PF13524 Glyco_trans_1_2: Glyc 99.4 1.3E-12 2.8E-17 95.4 6.1 85 124-208 1-92 (92)
94 TIGR02094 more_P_ylases alpha- 99.3 2.5E-10 5.5E-15 109.6 17.9 160 51-211 391-599 (601)
95 TIGR02919 accessory Sec system 99.2 1.2E-10 2.5E-15 108.1 13.8 124 51-187 284-414 (438)
96 TIGR00215 lpxB lipid-A-disacch 99.2 2.3E-10 4.9E-15 105.2 13.4 144 2-152 139-293 (385)
97 KOG2941 Beta-1,4-mannosyltrans 99.2 6E-10 1.3E-14 97.2 13.6 155 52-206 256-435 (444)
98 PF05693 Glycogen_syn: Glycoge 99.1 1.4E-09 3.1E-14 102.0 13.1 99 117-215 465-584 (633)
99 cd04299 GT1_Glycogen_Phosphory 98.9 6.5E-08 1.4E-12 95.1 15.6 161 51-212 480-689 (778)
100 PF00982 Glyco_transf_20: Glyc 98.7 3.6E-07 7.7E-12 85.8 13.4 136 50-187 277-443 (474)
101 PRK10117 trehalose-6-phosphate 98.7 3.6E-07 7.7E-12 85.1 12.9 190 20-212 221-453 (474)
102 PF13844 Glyco_transf_41: Glyc 98.5 2.6E-06 5.7E-11 79.1 13.4 160 51-211 285-465 (468)
103 TIGR03492 conserved hypothetic 98.4 8E-06 1.7E-10 75.4 14.2 172 2-186 161-366 (396)
104 COG0707 MurG UDP-N-acetylgluco 98.3 1.5E-05 3.2E-10 72.3 14.5 161 15-187 151-327 (357)
105 TIGR03590 PseG pseudaminic aci 98.3 6.3E-06 1.4E-10 72.5 11.1 96 50-154 172-269 (279)
106 COG0380 OtsA Trehalose-6-phosp 98.2 6.2E-05 1.4E-09 70.2 14.9 161 24-187 251-448 (486)
107 COG3914 Spy Predicted O-linked 98.1 7.5E-05 1.6E-09 69.9 14.0 160 51-211 430-612 (620)
108 PLN02205 alpha,alpha-trehalose 98.0 7E-05 1.5E-09 75.2 13.1 134 51-187 341-520 (854)
109 TIGR03568 NeuC_NnaA UDP-N-acet 98.0 0.00013 2.7E-09 66.8 13.7 97 105-209 263-364 (365)
110 PRK12446 undecaprenyldiphospho 98.0 0.00019 4.2E-09 65.2 14.6 182 13-209 149-348 (352)
111 TIGR01426 MGT glycosyltransfer 97.9 0.00042 9E-09 63.8 14.1 97 81-186 255-361 (392)
112 cd03784 GT1_Gtf_like This fami 97.6 0.00053 1.1E-08 63.2 10.0 117 52-184 243-372 (401)
113 COG1519 KdtA 3-deoxy-D-manno-o 97.5 0.0063 1.4E-07 55.5 15.2 133 50-185 232-387 (419)
114 PF13528 Glyco_trans_1_3: Glyc 97.3 0.0022 4.8E-08 57.0 10.4 111 50-180 194-316 (318)
115 PF02350 Epimerase_2: UDP-N-ac 97.3 0.0021 4.6E-08 58.3 10.0 114 62-184 197-318 (346)
116 KOG3742 Glycogen synthase [Car 97.2 0.00027 5.8E-09 64.4 3.4 96 117-212 496-612 (692)
117 PF02684 LpxB: Lipid-A-disacch 96.9 0.0092 2E-07 54.5 10.4 96 53-153 189-287 (373)
118 PHA03392 egt ecdysteroid UDP-g 96.8 0.16 3.5E-06 48.6 18.3 80 102-186 344-434 (507)
119 COG4641 Uncharacterized protei 96.6 0.014 3E-07 52.5 8.8 181 19-211 162-360 (373)
120 COG1819 Glycosyl transferases, 96.5 0.047 1E-06 50.7 12.4 125 50-186 237-370 (406)
121 PF04101 Glyco_tran_28_C: Glyc 96.4 0.00041 8.8E-09 56.0 -1.6 103 80-187 31-147 (167)
122 PF00201 UDPGT: UDP-glucoronos 96.4 0.092 2E-06 49.9 13.9 124 50-185 276-410 (500)
123 PRK02797 4-alpha-L-fucosyltran 96.3 0.37 8E-06 42.7 16.0 155 51-214 147-318 (322)
124 TIGR00661 MJ1255 conserved hyp 96.2 0.044 9.6E-07 49.0 9.9 109 62-186 198-316 (321)
125 COG0381 WecB UDP-N-acetylgluco 96.1 0.16 3.4E-06 46.2 12.8 118 62-187 219-344 (383)
126 COG0763 LpxB Lipid A disacchar 96.0 0.045 9.8E-07 49.6 8.7 96 52-153 192-291 (381)
127 PLN02410 UDP-glucoronosyl/UDP- 95.2 1.4 3E-05 41.6 16.1 76 105-185 325-411 (451)
128 PF07429 Glyco_transf_56: 4-al 94.9 1.3 2.8E-05 39.9 14.1 152 51-212 186-355 (360)
129 PF10087 DUF2325: Uncharacteri 94.8 0.18 3.8E-06 36.8 7.2 73 83-155 2-85 (97)
130 PF04464 Glyphos_transf: CDP-G 94.5 0.32 6.9E-06 44.3 9.7 177 2-186 135-338 (369)
131 PF05159 Capsule_synth: Capsul 94.4 0.82 1.8E-05 39.8 11.8 97 50-153 118-226 (269)
132 PRK14986 glycogen phosphorylas 94.3 0.41 8.9E-06 47.8 10.5 124 52-176 546-702 (815)
133 PLN02448 UDP-glycosyltransfera 94.1 3.4 7.3E-05 39.1 16.0 110 64-185 292-416 (459)
134 PF15024 Glyco_transf_18: Glyc 94.0 0.55 1.2E-05 44.8 10.3 144 52-211 280-454 (559)
135 PLN02670 transferase, transfer 93.8 1.2 2.6E-05 42.2 12.3 76 107-185 342-430 (472)
136 COG3980 spsG Spore coat polysa 93.5 0.36 7.8E-06 42.1 7.5 85 52-147 162-248 (318)
137 PLN02210 UDP-glucosyl transfer 93.4 1.9 4.1E-05 40.7 12.8 78 105-185 325-416 (456)
138 cd03789 GT1_LPS_heptosyltransf 93.3 0.55 1.2E-05 41.0 8.7 95 54-155 127-227 (279)
139 PRK14089 ipid-A-disaccharide s 93.1 0.33 7.1E-06 44.1 7.0 79 62-152 183-261 (347)
140 PLN02562 UDP-glycosyltransfera 93.0 1.1 2.4E-05 42.2 10.7 77 105-184 329-413 (448)
141 COG0058 GlgP Glucan phosphoryl 92.9 0.94 2E-05 44.9 10.1 118 52-169 490-629 (750)
142 cd04300 GT1_Glycogen_Phosphory 92.5 0.85 1.8E-05 45.7 9.4 124 52-176 533-689 (797)
143 PLN02152 indole-3-acetate beta 92.5 0.88 1.9E-05 42.9 9.2 82 101-185 324-418 (455)
144 PLN03004 UDP-glycosyltransfera 91.7 1.4 3E-05 41.6 9.6 77 105-184 335-424 (451)
145 PF00343 Phosphorylase: Carboh 91.6 3.5 7.5E-05 40.9 12.3 125 52-176 447-603 (713)
146 COG0859 RfaF ADP-heptose:LPS h 91.3 1.4 3E-05 39.7 8.9 98 51-155 178-280 (334)
147 PLN03007 UDP-glucosyltransfera 90.9 5.2 0.00011 38.1 12.7 78 105-185 346-441 (482)
148 PLN02173 UDP-glucosyl transfer 90.7 5 0.00011 37.8 12.2 79 104-185 317-409 (449)
149 PLN02555 limonoid glucosyltran 90.6 1.8 3.8E-05 41.2 9.2 78 103-185 336-430 (480)
150 PLN00414 glycosyltransferase f 90.4 5.5 0.00012 37.5 12.2 74 109-185 317-403 (446)
151 PRK01021 lpxB lipid-A-disaccha 90.4 1.5 3.3E-05 42.5 8.5 92 53-153 418-515 (608)
152 TIGR02093 P_ylase glycogen/sta 90.3 1.5 3.3E-05 43.8 8.6 124 52-176 530-686 (794)
153 PRK14985 maltodextrin phosphor 90.2 1.3 2.9E-05 44.2 8.2 128 48-176 525-688 (798)
154 PF04007 DUF354: Protein of un 90.1 2.2 4.7E-05 38.6 8.9 104 67-184 201-310 (335)
155 PLN02207 UDP-glycosyltransfera 90.1 7.7 0.00017 36.8 12.9 78 104-184 332-426 (468)
156 PF06258 Mito_fiss_Elm1: Mitoc 90.0 4.5 9.7E-05 36.2 10.8 101 51-155 149-259 (311)
157 TIGR02193 heptsyl_trn_I lipopo 88.8 9.8 0.00021 33.7 12.2 124 51-182 182-319 (319)
158 PLN02764 glycosyltransferase f 88.5 16 0.00035 34.5 13.7 74 109-185 322-408 (453)
159 TIGR02195 heptsyl_trn_II lipop 88.4 3.3 7.1E-05 37.1 8.9 96 53-155 179-280 (334)
160 PLN02208 glycosyltransferase f 87.8 9.4 0.0002 35.9 11.7 78 105-185 312-402 (442)
161 COG3660 Predicted nucleoside-d 87.7 9.9 0.00021 33.1 10.6 102 50-155 163-275 (329)
162 PLN00164 glucosyltransferase; 87.2 17 0.00036 34.6 13.2 75 109-186 344-433 (480)
163 PLN02554 UDP-glycosyltransfera 87.1 16 0.00035 34.8 13.0 76 105-183 343-439 (481)
164 PF03016 Exostosin: Exostosin 87.1 0.86 1.9E-05 40.0 4.2 37 117-153 232-269 (302)
165 PF01075 Glyco_transf_9: Glyco 86.4 4.6 0.0001 34.3 8.3 98 51-155 108-212 (247)
166 PLN02167 UDP-glycosyltransfera 85.7 10 0.00022 36.1 10.9 75 106-185 342-435 (475)
167 PLN02863 UDP-glucoronosyl/UDP- 83.8 29 0.00062 33.1 13.0 74 105-183 344-432 (477)
168 PLN02992 coniferyl-alcohol glu 83.0 19 0.0004 34.4 11.4 77 106-185 340-428 (481)
169 KOG4626 O-linked N-acetylgluco 82.5 11 0.00023 36.9 9.3 134 52-186 760-906 (966)
170 TIGR01012 Sa_S2_E_A ribosomal 82.2 11 0.00024 31.3 8.3 90 62-153 44-139 (196)
171 PF01113 DapB_N: Dihydrodipico 81.8 2.8 6E-05 31.9 4.4 43 113-155 59-101 (124)
172 PRK10964 ADP-heptose:LPS hepto 81.7 11 0.00024 33.5 9.0 93 55-155 185-282 (322)
173 PF11440 AGT: DNA alpha-glucos 80.4 29 0.00063 30.5 10.4 129 53-184 187-353 (355)
174 PRK10916 ADP-heptose:LPS hepto 78.7 14 0.00031 33.2 8.8 96 52-154 184-289 (348)
175 TIGR03609 S_layer_CsaB polysac 77.7 24 0.00052 31.0 9.7 85 64-154 190-278 (298)
176 PRK10422 lipopolysaccharide co 76.0 20 0.00044 32.3 9.0 98 51-155 186-291 (352)
177 PRK13015 3-dehydroquinate dehy 74.6 33 0.00072 27.0 8.4 91 93-183 33-141 (146)
178 TIGR02201 heptsyl_trn_III lipo 73.5 34 0.00073 30.7 9.8 96 52-154 185-288 (344)
179 PTZ00254 40S ribosomal protein 73.2 18 0.00038 31.2 7.2 92 61-153 52-149 (249)
180 PRK05395 3-dehydroquinate dehy 72.6 40 0.00086 26.5 8.4 91 93-183 33-141 (146)
181 PF01408 GFO_IDH_MocA: Oxidore 72.5 25 0.00054 25.8 7.4 74 76-155 21-96 (120)
182 PRK04020 rps2P 30S ribosomal p 71.9 31 0.00068 28.8 8.3 90 62-153 50-145 (204)
183 KOG0780 Signal recognition par 71.9 79 0.0017 29.3 11.2 157 51-212 156-342 (483)
184 PRK10017 colanic acid biosynth 71.4 72 0.0016 29.9 11.5 114 66-186 261-394 (426)
185 PF01531 Glyco_transf_11: Glyc 70.5 28 0.0006 30.8 8.3 83 64-151 190-274 (298)
186 COG1817 Uncharacterized protei 70.4 33 0.00071 30.7 8.3 63 117-186 248-316 (346)
187 COG2984 ABC-type uncharacteriz 70.0 31 0.00068 30.8 8.2 81 75-155 153-249 (322)
188 KOG3349 Predicted glycosyltran 70.0 32 0.00068 27.4 7.3 93 52-153 7-108 (170)
189 COG4671 Predicted glycosyl tra 66.7 43 0.00093 30.5 8.4 98 83-185 254-366 (400)
190 TIGR00288 conserved hypothetic 66.2 34 0.00073 27.4 7.1 66 63-129 90-156 (160)
191 cd00027 BRCT Breast Cancer Sup 65.6 32 0.0007 21.8 6.5 62 81-152 2-65 (72)
192 cd01080 NAD_bind_m-THF_DH_Cycl 65.4 29 0.00062 28.0 6.7 85 67-155 31-117 (168)
193 TIGR00853 pts-lac PTS system, 65.0 16 0.00036 26.3 4.7 70 83-153 7-83 (95)
194 KOG1021 Acetylglucosaminyltran 64.5 21 0.00046 33.8 6.6 68 117-185 339-410 (464)
195 PRK13302 putative L-aspartate 63.7 73 0.0016 27.8 9.4 71 79-154 30-100 (271)
196 cd01425 RPS2 Ribosomal protein 63.6 78 0.0017 26.0 9.1 75 80-155 56-160 (193)
197 COG2247 LytB Putative cell wal 62.1 61 0.0013 29.0 8.4 78 76-154 73-164 (337)
198 PRK05447 1-deoxy-D-xylulose 5- 61.9 59 0.0013 30.0 8.7 116 61-185 36-161 (385)
199 PLN03015 UDP-glucosyl transfer 61.7 70 0.0015 30.4 9.5 73 108-183 339-425 (470)
200 cd00466 DHQase_II Dehydroquina 61.6 76 0.0016 24.8 8.4 90 93-182 31-138 (140)
201 cd05565 PTS_IIB_lactose PTS_II 61.6 28 0.0006 25.4 5.4 70 83-152 4-79 (99)
202 PRK00048 dihydrodipicolinate r 61.1 38 0.00082 29.2 7.1 42 113-154 52-93 (257)
203 PF13407 Peripla_BP_4: Peripla 60.7 1E+02 0.0022 25.8 10.6 34 121-154 55-89 (257)
204 COG1519 KdtA 3-deoxy-D-manno-o 60.5 67 0.0015 29.9 8.8 84 66-153 64-154 (419)
205 TIGR01361 DAHP_synth_Bsub phos 60.3 1E+02 0.0022 26.8 9.6 121 52-186 26-160 (260)
206 cd05564 PTS_IIB_chitobiose_lic 60.1 26 0.00056 25.3 5.1 70 83-153 3-79 (96)
207 KOG1050 Trehalose-6-phosphate 60.0 95 0.0021 31.3 10.4 135 51-187 278-443 (732)
208 COG0111 SerA Phosphoglycerate 59.6 61 0.0013 29.2 8.3 64 80-143 142-221 (324)
209 PF02670 DXP_reductoisom: 1-de 59.4 75 0.0016 24.4 7.7 88 60-152 32-121 (129)
210 PRK04531 acetylglutamate kinas 59.1 42 0.00091 31.1 7.4 117 51-184 39-163 (398)
211 COG1692 Calcineurin-like phosp 57.8 87 0.0019 27.0 8.3 102 51-155 2-117 (266)
212 TIGR01283 nifE nitrogenase mol 57.6 1.7E+02 0.0037 27.6 14.3 111 60-184 167-295 (456)
213 PF09949 DUF2183: Uncharacteri 55.2 53 0.0011 24.0 6.0 40 68-107 52-93 (100)
214 PRK10017 colanic acid biosynth 55.1 1.3E+02 0.0029 28.1 10.1 42 51-92 2-45 (426)
215 PRK06718 precorrin-2 dehydroge 54.9 59 0.0013 26.9 7.0 93 51-155 12-104 (202)
216 cd01967 Nitrogenase_MoFe_alpha 54.3 1.8E+02 0.0039 26.8 16.3 111 60-184 134-258 (406)
217 PF11238 DUF3039: Protein of u 54.2 11 0.00023 24.6 1.8 16 136-151 15-30 (58)
218 PF03435 Saccharop_dh: Sacchar 53.6 1.1E+02 0.0024 27.9 9.3 74 77-153 19-99 (386)
219 cd03466 Nitrogenase_NifN_2 Nit 53.5 1.7E+02 0.0037 27.4 10.6 122 51-183 120-273 (429)
220 KOG0832 Mitochondrial/chloropl 52.8 80 0.0017 26.9 7.2 32 123-155 175-206 (251)
221 COG0673 MviM Predicted dehydro 51.7 1.2E+02 0.0027 26.8 9.2 59 91-153 39-99 (342)
222 cd06167 LabA_like LabA_like pr 50.8 92 0.002 23.9 7.3 66 59-125 78-146 (149)
223 COG0052 RpsB Ribosomal protein 50.6 82 0.0018 27.1 7.1 19 135-153 169-187 (252)
224 PF13241 NAD_binding_7: Putati 49.0 41 0.00088 24.4 4.6 42 118-159 57-100 (103)
225 PF04230 PS_pyruv_trans: Polys 49.0 1.5E+02 0.0034 24.6 9.0 32 117-153 253-284 (286)
226 cd00316 Oxidoreductase_nitroge 48.5 2.1E+02 0.0046 26.0 10.6 91 60-152 126-231 (399)
227 PRK08673 3-deoxy-7-phosphohept 48.1 2.1E+02 0.0046 25.9 10.4 100 52-153 94-208 (335)
228 KOG1192 UDP-glucuronosyl and U 47.9 1.6E+02 0.0035 27.6 9.7 77 106-186 337-424 (496)
229 PF05014 Nuc_deoxyrib_tr: Nucl 47.8 20 0.00043 26.5 2.8 41 117-157 57-101 (113)
230 COG0757 AroQ 3-dehydroquinate 47.4 83 0.0018 24.5 6.0 89 94-182 33-139 (146)
231 cd01750 GATase1_CobQ Type 1 gl 45.9 88 0.0019 25.6 6.7 68 83-154 3-81 (194)
232 TIGR01088 aroQ 3-dehydroquinat 45.8 1.4E+02 0.0031 23.3 8.9 89 94-182 32-138 (141)
233 cd01539 PBP1_GGBP Periplasmic 45.6 1.9E+02 0.0041 25.1 9.2 34 121-154 57-91 (303)
234 PF02826 2-Hacid_dh_C: D-isome 45.3 75 0.0016 25.6 6.1 75 80-154 36-129 (178)
235 PF01936 NYN: NYN domain; Int 45.1 80 0.0017 23.9 6.1 67 60-127 75-144 (146)
236 PRK13398 3-deoxy-7-phosphohept 44.5 2.1E+02 0.0046 24.9 12.5 100 51-153 27-142 (266)
237 PF01220 DHquinase_II: Dehydro 44.0 1.5E+02 0.0034 23.1 7.5 88 94-181 33-138 (140)
238 PF03568 Peptidase_C50: Peptid 43.6 1.2E+02 0.0025 28.0 7.7 147 3-153 205-375 (383)
239 COG1029 FwdB Formylmethanofura 43.5 2.3E+02 0.005 26.0 9.1 101 51-153 248-367 (429)
240 KOG2842 Interferon-related pro 43.0 44 0.00095 30.7 4.6 139 131-273 234-390 (427)
241 PF04430 DUF498: Protein of un 42.6 42 0.0009 24.8 3.8 42 68-109 41-86 (110)
242 PRK06487 glycerate dehydrogena 42.3 93 0.002 27.8 6.7 73 80-152 148-233 (317)
243 PF04413 Glycos_transf_N: 3-De 42.3 1.6E+02 0.0034 24.0 7.6 87 64-153 34-126 (186)
244 PLN02696 1-deoxy-D-xylulose-5- 41.4 1.6E+02 0.0034 27.9 8.1 37 117-153 143-181 (454)
245 PLN02534 UDP-glycosyltransfera 41.3 30 0.00066 33.1 3.6 76 105-183 345-443 (491)
246 PF01012 ETF: Electron transfe 40.7 1.3E+02 0.0028 23.7 6.7 90 63-152 16-121 (164)
247 PRK12311 rpsB 30S ribosomal pr 40.6 2.7E+02 0.0059 25.1 9.3 30 123-153 154-183 (326)
248 PF00533 BRCT: BRCA1 C Terminu 40.3 64 0.0014 21.3 4.3 65 79-152 7-72 (78)
249 PRK15438 erythronate-4-phospha 40.2 1.6E+02 0.0035 27.1 8.0 77 79-155 115-210 (378)
250 cd05014 SIS_Kpsf KpsF-like pro 40.1 91 0.002 23.1 5.6 73 82-154 2-83 (128)
251 PF12996 DUF3880: DUF based on 39.8 41 0.00089 23.2 3.2 55 2-60 19-78 (79)
252 PF05116 S6PP: Sucrose-6F-phos 39.6 5.7 0.00012 34.1 -1.5 29 256-284 34-63 (247)
253 PRK08410 2-hydroxyacid dehydro 39.2 1.3E+02 0.0029 26.7 7.2 72 80-151 145-231 (311)
254 cd01965 Nitrogenase_MoFe_beta_ 38.8 3.3E+02 0.0071 25.4 12.4 121 51-184 118-273 (428)
255 PRK05718 keto-hydroxyglutarate 38.8 2.3E+02 0.0049 23.8 8.1 81 67-151 53-134 (212)
256 cd01971 Nitrogenase_VnfN_like 37.4 3.5E+02 0.0075 25.2 11.2 91 60-152 131-238 (427)
257 PRK08374 homoserine dehydrogen 37.4 1.2E+02 0.0027 27.3 6.8 40 115-154 83-124 (336)
258 KOG2741 Dimeric dihydrodiol de 37.2 1.7E+02 0.0037 26.6 7.4 85 65-155 19-106 (351)
259 PF13905 Thioredoxin_8: Thiore 37.1 1.4E+02 0.003 20.6 7.3 65 64-128 16-84 (95)
260 PRK05299 rpsB 30S ribosomal pr 36.8 2.8E+02 0.0061 24.0 9.4 60 122-184 158-219 (258)
261 cd05125 Mth938_2P1-like Mth938 36.6 99 0.0021 23.2 5.0 42 68-109 42-87 (114)
262 PRK06932 glycerate dehydrogena 36.6 1.2E+02 0.0027 27.0 6.6 74 80-153 147-234 (314)
263 PF02882 THF_DHG_CYH_C: Tetrah 36.4 2.2E+02 0.0048 22.7 7.5 53 78-130 34-88 (160)
264 PRK05749 3-deoxy-D-manno-octul 36.4 3.1E+02 0.0066 25.2 9.5 87 64-153 63-155 (425)
265 TIGR01470 cysG_Nterm siroheme 36.2 2.3E+02 0.005 23.5 7.8 92 51-155 11-104 (205)
266 COG2327 WcaK Polysaccharide py 36.1 2.6E+02 0.0057 25.9 8.5 97 86-187 246-353 (385)
267 COG0439 AccC Biotin carboxylas 36.1 3.8E+02 0.0083 25.4 10.6 123 52-186 48-189 (449)
268 PF03447 NAD_binding_3: Homose 35.7 60 0.0013 23.9 3.8 42 114-155 50-93 (117)
269 PRK13181 hisH imidazole glycer 35.3 2.2E+02 0.0048 23.2 7.5 59 93-155 13-82 (199)
270 PLN02928 oxidoreductase family 34.8 1.5E+02 0.0032 27.0 6.8 72 80-151 159-261 (347)
271 COG1927 Mtd Coenzyme F420-depe 34.6 2E+02 0.0044 24.2 6.8 36 52-91 7-42 (277)
272 PF10649 DUF2478: Protein of u 34.6 33 0.00072 27.4 2.3 54 121-174 93-156 (159)
273 PRK13304 L-aspartate dehydroge 34.3 2.6E+02 0.0057 24.1 8.1 69 80-154 26-94 (265)
274 PF13277 YmdB: YmdB-like prote 34.0 1.6E+02 0.0035 25.5 6.5 101 53-156 1-115 (253)
275 TIGR00243 Dxr 1-deoxy-D-xylulo 33.7 2E+02 0.0044 26.6 7.5 91 59-154 34-126 (389)
276 PRK08306 dipicolinate synthase 33.6 2.1E+02 0.0045 25.3 7.5 73 81-153 3-102 (296)
277 PRK08306 dipicolinate synthase 33.5 1.3E+02 0.0028 26.6 6.2 71 79-149 151-238 (296)
278 PRK05562 precorrin-2 dehydroge 33.3 3E+02 0.0064 23.3 8.0 96 51-158 27-124 (223)
279 PRK00257 erythronate-4-phospha 33.2 2.5E+02 0.0054 25.9 8.1 77 79-155 115-210 (381)
280 PRK10840 transcriptional regul 32.9 2.7E+02 0.0058 22.6 10.3 103 81-184 4-126 (216)
281 PRK02910 light-independent pro 32.8 4.3E+02 0.0092 25.5 10.0 68 82-151 160-239 (519)
282 PF14918 MTBP_N: MDM2-binding 32.8 98 0.0021 26.6 4.9 72 66-145 141-217 (271)
283 PRK05472 redox-sensing transcr 32.8 2.9E+02 0.0062 22.9 11.3 96 60-155 64-180 (213)
284 PRK15482 transcriptional regul 31.8 2.9E+02 0.0064 23.9 8.2 73 82-154 137-218 (285)
285 TIGR01011 rpsB_bact ribosomal 31.7 3.2E+02 0.0069 23.1 9.4 32 123-155 157-188 (225)
286 cd05212 NAD_bind_m-THF_DH_Cycl 31.4 2.5E+02 0.0054 21.8 8.1 69 79-149 27-97 (140)
287 COG3737 Uncharacterized conser 31.3 1E+02 0.0022 23.3 4.2 48 61-108 50-101 (127)
288 COG1879 RbsB ABC-type sugar tr 31.1 3.6E+02 0.0078 23.6 9.2 36 120-155 90-126 (322)
289 cd01972 Nitrogenase_VnfE_like 30.6 2.7E+02 0.0058 26.0 8.0 92 60-153 136-245 (426)
290 PF02233 PNTB: NAD(P) transhyd 30.2 1.4E+02 0.003 28.3 5.9 120 58-180 318-461 (463)
291 PF04392 ABC_sub_bind: ABC tra 30.1 3.7E+02 0.008 23.4 8.7 116 63-184 116-251 (294)
292 COG2085 Predicted dinucleotide 29.9 2.4E+02 0.0053 23.7 6.7 97 84-185 27-125 (211)
293 TIGR01761 thiaz-red thiazoliny 29.6 4.3E+02 0.0093 24.0 9.3 89 51-153 5-98 (343)
294 cd01968 Nitrogenase_NifE_I Nit 29.3 4.6E+02 0.01 24.2 10.3 88 61-150 133-234 (410)
295 PRK15408 autoinducer 2-binding 29.2 1.7E+02 0.0038 26.2 6.4 35 121-155 80-115 (336)
296 cd05312 NAD_bind_1_malic_enz N 29.1 3.4E+02 0.0074 23.9 7.8 33 117-149 99-136 (279)
297 COG1052 LdhA Lactate dehydroge 29.1 2.3E+02 0.005 25.5 7.0 76 80-155 146-239 (324)
298 PRK06719 precorrin-2 dehydroge 29.0 2.9E+02 0.0063 21.8 7.0 38 118-155 67-104 (157)
299 TIGR02932 vnfK_nitrog V-contai 28.5 2.4E+02 0.0051 26.7 7.3 120 51-183 130-281 (457)
300 COG1887 TagB Putative glycosyl 28.5 4.8E+02 0.01 24.1 12.1 131 49-187 208-356 (388)
301 PRK06436 glycerate dehydrogena 28.4 2.7E+02 0.0058 24.7 7.3 71 80-150 122-207 (303)
302 TIGR00715 precor6x_red precorr 28.3 2.8E+02 0.0062 23.9 7.2 80 98-182 166-255 (256)
303 PRK14189 bifunctional 5,10-met 28.3 3.8E+02 0.0082 23.7 8.0 70 79-150 157-228 (285)
304 COG0422 ThiC Thiamine biosynth 28.2 3.4E+02 0.0074 25.1 7.7 138 61-207 203-387 (432)
305 COG4109 Predicted transcriptio 28.1 1.5E+02 0.0033 27.1 5.5 56 80-138 114-172 (432)
306 PF02302 PTS_IIB: PTS system, 27.8 1.4E+02 0.0029 20.7 4.4 50 83-132 3-58 (90)
307 PRK11557 putative DNA-binding 27.7 3.9E+02 0.0085 22.9 8.8 72 82-153 130-210 (278)
308 PRK09932 glycerate kinase II; 27.5 2.2E+02 0.0048 26.3 6.6 81 60-143 265-356 (381)
309 PF07801 DUF1647: Protein of u 27.5 3E+02 0.0066 21.5 7.3 59 51-110 61-120 (142)
310 PRK13243 glyoxylate reductase; 27.4 2.4E+02 0.0053 25.3 7.0 73 80-152 150-240 (333)
311 PF12738 PTCB-BRCT: twin BRCT 27.2 1.7E+02 0.0038 18.6 5.9 59 83-152 3-62 (63)
312 COG4567 Response regulator con 27.2 3.3E+02 0.0072 21.8 7.7 127 79-208 8-153 (182)
313 COG0062 Uncharacterized conser 27.0 2.4E+02 0.0053 23.5 6.3 38 118-155 116-161 (203)
314 KOG2501 Thioredoxin, nucleored 26.9 3.1E+02 0.0067 21.9 6.5 71 60-130 47-119 (157)
315 TIGR01286 nifK nitrogenase mol 26.9 2.4E+02 0.0052 27.2 7.1 113 59-184 191-337 (515)
316 PRK11543 gutQ D-arabinose 5-ph 26.9 2.5E+02 0.0055 24.7 7.0 88 66-155 30-126 (321)
317 PRK04207 glyceraldehyde-3-phos 26.5 4.8E+02 0.01 23.5 8.9 75 78-153 23-110 (341)
318 PRK09590 celB cellobiose phosp 26.4 1.6E+02 0.0035 21.6 4.6 69 83-152 5-82 (104)
319 PRK14175 bifunctional 5,10-met 26.2 2.8E+02 0.006 24.5 6.8 53 79-131 157-211 (286)
320 PRK14192 bifunctional 5,10-met 26.2 2.2E+02 0.0048 25.0 6.3 51 79-129 158-210 (283)
321 PF00290 Trp_syntA: Tryptophan 26.1 2.8E+02 0.0061 24.1 6.8 13 93-105 130-142 (259)
322 PRK03743 pdxA 4-hydroxythreoni 25.9 2.4E+02 0.0051 25.6 6.4 73 106-183 240-325 (332)
323 PRK13396 3-deoxy-7-phosphohept 25.9 5.2E+02 0.011 23.6 11.1 99 52-153 102-216 (352)
324 PRK06015 keto-hydroxyglutarate 25.8 3.9E+02 0.0084 22.2 8.3 79 66-150 41-122 (201)
325 PRK12480 D-lactate dehydrogena 25.8 2.3E+02 0.0049 25.5 6.4 74 82-155 148-237 (330)
326 KOG4166 Thiamine pyrophosphate 25.7 4.6E+02 0.01 24.8 8.2 120 58-183 88-234 (675)
327 TIGR02931 anfK_nitrog Fe-only 25.7 3.5E+02 0.0075 25.7 7.9 113 61-184 148-285 (461)
328 TIGR00036 dapB dihydrodipicoli 25.4 95 0.0021 26.9 3.8 41 114-154 61-101 (266)
329 TIGR02853 spore_dpaA dipicolin 25.2 2.4E+02 0.0051 24.8 6.3 70 80-149 151-237 (287)
330 PRK15424 propionate catabolism 25.2 6.4E+02 0.014 24.5 9.8 52 132-183 142-194 (538)
331 COG3473 Maleate cis-trans isom 25.1 4.2E+02 0.0092 22.4 7.7 32 124-155 183-214 (238)
332 PRK15409 bifunctional glyoxyla 25.0 2.7E+02 0.0059 24.9 6.8 74 80-153 145-237 (323)
333 cd01538 PBP1_ABC_xylose_bindin 24.9 4.4E+02 0.0095 22.5 10.0 35 121-155 55-90 (288)
334 PF11071 DUF2872: Protein of u 24.7 71 0.0015 24.6 2.4 65 117-182 68-140 (141)
335 PLN02819 lysine-ketoglutarate 24.5 4.7E+02 0.01 27.8 9.0 69 83-153 608-680 (1042)
336 TIGR00557 pdxA 4-hydroxythreon 24.5 2.8E+02 0.0061 24.9 6.6 73 106-183 233-318 (320)
337 cd06289 PBP1_MalI_like Ligand- 24.5 4.1E+02 0.0088 22.0 11.1 62 121-186 55-117 (268)
338 cd07382 MPP_DR1281 Deinococcus 24.3 4.4E+02 0.0095 22.8 7.7 80 51-131 1-90 (255)
339 PF01081 Aldolase: KDPG and KH 24.2 3.8E+02 0.0083 22.1 7.0 80 68-151 47-127 (196)
340 PRK05331 putative phosphate ac 24.2 2.2E+02 0.0049 25.7 6.0 45 57-104 8-52 (334)
341 TIGR01768 GGGP-family geranylg 24.0 1.9E+02 0.0042 24.5 5.2 72 56-131 4-81 (223)
342 PF10686 DUF2493: Protein of u 24.0 2.4E+02 0.0051 19.1 7.9 57 51-109 5-63 (71)
343 PRK02746 pdxA 4-hydroxythreoni 23.8 4.6E+02 0.01 23.9 7.9 73 106-183 245-338 (345)
344 PRK09444 pntB pyridine nucleot 23.6 3.5E+02 0.0076 25.6 7.2 64 117-180 377-460 (462)
345 TIGR02964 xanthine_xdhC xanthi 23.4 1.1E+02 0.0023 26.4 3.7 35 78-112 98-132 (246)
346 PF00926 DHBP_synthase: 3,4-di 23.4 79 0.0017 26.2 2.7 19 137-155 3-21 (194)
347 PRK15469 ghrA bifunctional gly 23.4 2.5E+02 0.0053 25.1 6.1 70 80-149 136-223 (312)
348 TIGR03855 NAD_NadX aspartate d 23.3 2.8E+02 0.0061 23.5 6.2 67 81-153 2-69 (229)
349 TIGR00182 plsX fatty acid/phos 23.1 2.9E+02 0.0063 24.8 6.5 46 61-109 3-48 (322)
350 COG3414 SgaB Phosphotransferas 23.1 1.1E+02 0.0025 22.0 3.2 48 83-130 5-58 (93)
351 PRK10310 PTS system galactitol 23.0 1.6E+02 0.0034 21.1 4.0 48 83-130 6-59 (94)
352 TIGR02990 ectoine_eutA ectoine 23.0 3.6E+02 0.0078 23.0 6.8 15 139-154 201-215 (239)
353 PRK13527 glutamine amidotransf 23.0 2.9E+02 0.0063 22.5 6.2 60 94-155 18-87 (200)
354 PF13478 XdhC_C: XdhC Rossmann 22.8 1.3E+02 0.0028 23.3 3.7 30 83-112 1-30 (136)
355 CHL00073 chlN photochlorophyll 22.7 6.7E+02 0.014 23.8 11.7 153 13-184 94-289 (457)
356 COG1618 Predicted nucleotide k 22.7 2.6E+02 0.0055 22.7 5.3 68 117-184 96-177 (179)
357 cd01973 Nitrogenase_VFe_beta_l 22.7 3.3E+02 0.0072 25.7 7.1 121 51-184 127-278 (454)
358 PF00793 DAHP_synth_1: DAHP sy 22.7 5.2E+02 0.011 22.6 7.8 103 51-153 16-139 (270)
359 COG1171 IlvA Threonine dehydra 22.6 5E+02 0.011 23.7 7.9 52 136-187 214-280 (347)
360 PRK12464 1-deoxy-D-xylulose 5- 22.6 4E+02 0.0087 24.6 7.3 89 59-154 29-119 (383)
361 PF00185 OTCace: Aspartate/orn 22.5 3.9E+02 0.0084 21.0 7.0 72 51-131 4-83 (158)
362 PLN02929 NADH kinase 22.5 4.2E+02 0.009 23.6 7.3 66 119-185 62-138 (301)
363 PRK10206 putative oxidoreducta 22.3 4.3E+02 0.0094 23.7 7.6 69 79-153 26-96 (344)
364 PRK11337 DNA-binding transcrip 21.9 4.7E+02 0.01 22.7 7.6 73 81-153 141-222 (292)
365 PRK06270 homoserine dehydrogen 21.7 4.4E+02 0.0096 23.7 7.5 40 114-153 80-126 (341)
366 PRK11199 tyrA bifunctional cho 21.7 3.6E+02 0.0077 24.7 7.0 46 82-127 100-148 (374)
367 TIGR01278 DPOR_BchB light-inde 21.6 3.4E+02 0.0074 26.1 7.1 89 61-151 131-239 (511)
368 KOG3363 Uncharacterized conser 21.4 1.9E+02 0.0041 23.3 4.3 60 52-111 79-148 (196)
369 COG5148 RPN10 26S proteasome r 21.3 1.8E+02 0.0039 24.0 4.3 13 172-184 208-220 (243)
370 PRK07574 formate dehydrogenase 21.3 3.2E+02 0.007 25.2 6.6 72 81-152 193-284 (385)
371 PRK00232 pdxA 4-hydroxythreoni 21.3 3.7E+02 0.0081 24.3 6.8 73 106-183 240-325 (332)
372 cd05311 NAD_bind_2_malic_enz N 21.3 5E+02 0.011 21.8 8.6 33 117-150 93-125 (226)
373 TIGR01658 EYA-cons_domain eyes 21.2 2.9E+02 0.0063 24.0 5.7 34 69-105 217-252 (274)
374 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.2 2.2E+02 0.0047 20.9 4.7 71 83-153 2-81 (126)
375 PRK11508 sulfur transfer prote 21.1 3.5E+02 0.0075 20.1 5.5 15 269-283 92-106 (109)
376 TIGR02015 BchY chlorophyllide 21.1 6.1E+02 0.013 23.7 8.5 121 51-185 117-260 (422)
377 cd06267 PBP1_LacI_sugar_bindin 21.0 4.6E+02 0.01 21.3 10.9 59 121-184 55-114 (264)
378 TIGR01182 eda Entner-Doudoroff 21.0 4.9E+02 0.011 21.7 8.8 82 65-150 44-126 (204)
379 PF00852 Glyco_transf_10: Glyc 20.9 2.2E+02 0.0049 25.7 5.5 102 93-202 192-311 (349)
380 COG3613 Nucleoside 2-deoxyribo 20.9 1.4E+02 0.0031 24.2 3.6 37 117-153 64-106 (172)
381 PRK06091 membrane protein FdrA 20.7 2.6E+02 0.0056 27.3 5.9 64 123-186 254-320 (555)
382 COG4565 CitB Response regulato 20.7 3.4E+02 0.0074 23.0 5.9 14 170-183 106-119 (224)
383 PRK10792 bifunctional 5,10-met 20.6 4.8E+02 0.01 23.0 7.2 69 79-149 158-228 (285)
384 PRK00005 fmt methionyl-tRNA fo 20.6 6E+02 0.013 22.5 8.2 12 94-105 47-58 (309)
385 COG4213 XylF ABC-type xylose t 20.5 2.1E+02 0.0046 25.7 4.9 37 118-154 78-115 (341)
386 PRK14191 bifunctional 5,10-met 20.5 3.8E+02 0.0083 23.7 6.5 51 79-129 156-208 (285)
387 TIGR01921 DAP-DH diaminopimela 20.5 6.4E+02 0.014 22.7 8.5 69 78-154 25-93 (324)
388 TIGR03342 dsrC_tusE_dsvC sulfu 20.4 3.7E+02 0.008 20.0 5.5 15 269-283 91-105 (108)
389 CHL00067 rps2 ribosomal protei 20.4 5.3E+02 0.012 21.8 9.0 30 123-153 163-192 (230)
390 cd05560 Xcc1710_like Xcc1710_l 20.1 3.3E+02 0.0071 20.1 5.3 37 71-109 45-85 (109)
391 cd00248 Mth938-like Mth938-lik 20.0 2.8E+02 0.006 20.4 4.9 40 69-109 42-85 (109)
No 1
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=2e-49 Score=365.38 Aligned_cols=282 Identities=78% Similarity=1.196 Sum_probs=244.6
Q ss_pred CCeeeeCchhhhhccCCcEEeeccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCe
Q 023072 2 GFQVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 81 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~~i~vi~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~ 81 (287)
||+||+.|.+++++.+..+.+++|||+++|.+..........+...+.+.++|+||+.++||++.||+++.++.+..+++
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~ 260 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGL 260 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCe
Confidence 89999999999998766555559999999987755321111111112346899999999999999999999998888999
Q ss_pred EEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCcccccc
Q 023072 82 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQ 161 (287)
Q Consensus 82 ~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~ 161 (287)
+|+|+|+|++.++++++++++++.++++++..+.+++|+.+|+||+||.+|+||++++||||||+|||+++.++.+++.+
T Consensus 261 ~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~~~v~~ 340 (462)
T PLN02846 261 EVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNEFFKQ 340 (462)
T ss_pred EEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCCcceeec
Confidence 99999999999999999999998877876666667899999999999999999999999999999999999999999999
Q ss_pred CCCeEeecCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHhcccccccCCCCCCCcccccCchhHHhhHHH
Q 023072 162 FPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVKKPSKSPSKHFASTSLNLKKNMEE 241 (287)
Q Consensus 162 ~~~g~l~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (287)
+.||++++|.++|++++..++++++.+++...++.|||+++++++++.|++.+..+..+.+..+....+.++.+.+.+|+
T Consensus 341 ~~ng~~~~~~~~~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (462)
T PLN02846 341 FPNCRTYDDGKGFVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADLDLPSSAKPNKSSLKNFMSTSPNLKKNMED 420 (462)
T ss_pred CCceEecCCHHHHHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhccCCcCccccccccccchhccCccHhhhhhh
Confidence 99999999999999999999997665666677789999999999999999988765554444445556666789999999
Q ss_pred HHHHHHHHhcccchhhhhccCCCCCCCCCHHHHHHhCCCCCC
Q 023072 242 ASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPM 283 (287)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 283 (287)
+++++|+.++|.|..|++|||+||++++++|.|+++||++|.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (462)
T PLN02846 421 ASAYLHNVASGFETSRRAFGAIPGSLQPDEQQCKELGLALQT 462 (462)
T ss_pred HHHHHHHHhhhhHHHHHHccCCCCCCCCCHHHHHhcCCCCCC
Confidence 999999999999999999999999999999999999999873
No 2
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=5.4e-49 Score=368.34 Aligned_cols=285 Identities=49% Similarity=0.861 Sum_probs=245.2
Q ss_pred CCeeeeCchhhhhccCCcEEeeccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCe
Q 023072 2 GFQVIRLSAATQEYANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGL 81 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~~i~vi~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~ 81 (287)
||+||+.|++++.++.+.+.++||||+++|.+..........+.....+.++|+||+.+.||++.|++++..+....+++
T Consensus 499 cD~VIaPS~atq~L~~~vI~nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnv 578 (794)
T PLN02501 499 CHKVLRLSAATQDLPKSVICNVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGF 578 (794)
T ss_pred CCEEEcCCHHHHHhcccceeecccccccccCCcchhHHHHhcCCccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCe
Confidence 89999999999998877777779999999998766432222222223346999999999999999999999998888899
Q ss_pred EEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCcccccc
Q 023072 82 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQ 161 (287)
Q Consensus 82 ~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~ 161 (287)
+|+|+|+|++.+.+++++.++++.+.|+|+.++..++|+.+|+||+||.+|+||++++||||||+|||+++.++.+++.+
T Consensus 579 rLvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~V~~ 658 (794)
T PLN02501 579 NLDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFRS 658 (794)
T ss_pred EEEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCceEee
Confidence 99999999999999999999998888888888777899999999999999999999999999999999999999887888
Q ss_pred CCCeEeecCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHhccccccc------CCCCCCCcccccCchhH
Q 023072 162 FPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQAVVK------KPSKSPSKHFASTSLNL 235 (287)
Q Consensus 162 ~~~g~l~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 235 (287)
+.+|+++.|.++|+++|.+++.+++.+.....+..|||+++++++++..++.+..+. .+....+.......+.+
T Consensus 659 g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (794)
T PLN02501 659 FPNCLTYKTSEDFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSDLDKVLNNGDDAKLSKSGGKSITKSVSMPNL 738 (794)
T ss_pred cCCeEecCCHHHHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhccccccccccccccccccccchhhhccCCcH
Confidence 889999999999999999999988765555556799999999999999987654332 11222233334445889
Q ss_pred HhhHHHHHHHHHHHhcccchhhhhccCCCCCCCCCHHHHHHhCCCCCCCCC
Q 023072 236 KKNMEEASAYVHFLASGFETSRRAFGAIPGSLHPDEELCKELGLVTPMSKQ 286 (287)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
.+++|++++++|++++|++..|++|||.|+++++++|.|+++||.+|.+++
T Consensus 739 ~~~~~~~~~~~h~~~~g~~~~r~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 789 (794)
T PLN02501 739 SEMVDGGLAFAHYCLTGNEFLRLCTGAIPGTRDYDKQHCKDLHLLPPHVEN 789 (794)
T ss_pred HHHhhhHHHHHHHHhhccHHHHHHhcCCCCCCCcCHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999998875
No 3
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=2.3e-32 Score=252.26 Aligned_cols=203 Identities=14% Similarity=0.143 Sum_probs=173.9
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||.||++|+.+.+ ++++++.+| ||+|++.|.+..... .... ..|+|+|++.+.||++.++++++.+
T Consensus 175 ad~vv~~S~~~~~~l~~~g~~~~ki~vi~nGvd~~~f~~~~~~~---~~~~----~~il~vGrl~~~Kg~~~ll~a~~~l 247 (406)
T PRK15427 175 GDLMLPISDLWAGRLQKMGCPPEKIAVSRMGVDMTRFSPRPVKA---PATP----LEIISVARLTEKKGLHVAIEACRQL 247 (406)
T ss_pred CCEEEECCHHHHHHHHHcCCCHHHEEEcCCCCCHHHcCCCcccc---CCCC----eEEEEEeCcchhcCHHHHHHHHHHH
Confidence 7899999998654 356789999 999999886532211 1112 2699999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHH--HHhhhCCEEEcCCCC------CcchHHHHHHHhc
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAM 144 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~adv~v~ps~~------E~~~~~~~EAma~ 144 (287)
.+..++++++|+|+|+..+++++.++++++. +.+.|..++.+ ++|+.||+||+||.. |++|++++|||||
T Consensus 248 ~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~ 327 (406)
T PRK15427 248 KEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAV 327 (406)
T ss_pred HhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhC
Confidence 8888899999999999889999999998874 55568888877 999999999999984 9999999999999
Q ss_pred CCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHh-CCCC--CccHHHH----hcCCHHHHHHHHHHHHh
Q 023072 145 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR----HQLSWESATERFLQVAE 211 (287)
Q Consensus 145 G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~-~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 211 (287)
|+|||+|+.++ .|++.++.+|++++ |+++++++|.++++ +++. +++.+++ ++|+|+.+.+++.++|+
T Consensus 328 G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 328 GIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELASLLQ 404 (406)
T ss_pred CCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999988 88999999998886 99999999999999 7654 5555444 68999999999999986
No 4
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=5.9e-32 Score=265.92 Aligned_cols=194 Identities=18% Similarity=0.194 Sum_probs=152.3
Q ss_pred cEEee-ccCCCCccccCcchHHH--------------------hhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHh
Q 023072 19 IICNV-HGVNPKFLEIGKKKKEQ--------------------QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKE 77 (287)
Q Consensus 19 ~i~vi-~gvd~~~~~~~~~~~~~--------------------~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~ 77 (287)
++.|| +|||++.|.+....... ......+..+.|+|+||+.++||++.||+|+..+.+.
T Consensus 428 ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l 507 (1050)
T TIGR02468 428 RMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPL 507 (1050)
T ss_pred CeEEeCCCCcHHHccCCCccccchhcccccccccccchhhHHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhh
Confidence 88999 99999999875321100 0000011223799999999999999999999999754
Q ss_pred c--CCeEEEEEeCCcCH-----------HHHHHHHHhcCCceEE--ecCCCCHH--HHhhhC----CEEEcCCCCCcchH
Q 023072 78 L--AGLEVDLYGNGEDF-----------NQIQEAAEKLKIVVRV--YPGRDHAD--LIFHDY----KVFLNPSTTDVVCT 136 (287)
Q Consensus 78 ~--~~~~l~i~G~g~~~-----------~~l~~~~~~~~l~~~v--~g~~~~~~--~~~~~a----dv~v~ps~~E~~~~ 136 (287)
. +++. +|+|++++. ..++++++++++..+| .|..++.+ .+|+.| |+||+||++|+||+
T Consensus 508 ~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGL 586 (1050)
T TIGR02468 508 RELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGL 586 (1050)
T ss_pred ccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCH
Confidence 3 4565 466876542 3467788888885444 57766666 899887 69999999999999
Q ss_pred HHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHH
Q 023072 137 TTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQ 208 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~ 208 (287)
+++||||||+|||+|+.+| .+++.++.+|++++ |+++|+++|.++++++.. +++.+.+ ++|+|+.+++++++
T Consensus 587 vlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~ 666 (1050)
T TIGR02468 587 TLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLS 666 (1050)
T ss_pred HHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 9999999999999999988 88999999999987 999999999999998765 4555433 57999999999999
Q ss_pred HHhcc
Q 023072 209 VAELD 213 (287)
Q Consensus 209 ~~~~~ 213 (287)
.|...
T Consensus 667 ~i~~~ 671 (1050)
T TIGR02468 667 RIASC 671 (1050)
T ss_pred HHHHH
Confidence 88743
No 5
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=2e-31 Score=244.19 Aligned_cols=210 Identities=18% Similarity=0.243 Sum_probs=170.8
Q ss_pred CCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
+++||+.|+.+.+ ++..++.+| ||+|.+.|.+..........+.....+.++|+|++.+.||++.|++|+..+.
T Consensus 140 ~~~ii~~S~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~ 219 (380)
T PRK15484 140 NAKIIVPSQFLKKFYEERLPNADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFEKLA 219 (380)
T ss_pred CCEEEEcCHHHHHHHHhhCCCCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHHHHH
Confidence 5789999999865 356789999 9999887765433221112111112347999999999999999999999999
Q ss_pred HhcCCeEEEEEeCCcC---------HHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCC-CcchHHHHHHHh
Q 023072 76 KELAGLEVDLYGNGED---------FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALA 143 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~---------~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~-E~~~~~~~EAma 143 (287)
+.+|+++|+|+|+|+. .+.+++++.+++.++.++|..++.+ .+|+.||++|+||.+ |+||++++||||
T Consensus 220 ~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 220 TAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred HhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHH
Confidence 8889999999998763 1246666777787888889987766 999999999999985 999999999999
Q ss_pred cCCeEEeecCCC-ccccccCCCeE-eec--CHHHHHHHHHHHHhCCCC-CccHHHH----hcCCHHHHHHHHHHHHh
Q 023072 144 MGKIVVCANHPS-NDFFKQFPNCR-TYD--DRNGFVEATLKALAEEPA-LPTEAQR----HQLSWESATERFLQVAE 211 (287)
Q Consensus 144 ~G~PVV~s~~~~-~e~i~~~~~g~-l~~--d~~~l~~~i~~ll~~~~~-~~~~~~~----~~~sw~~~~~~~~~~~~ 211 (287)
||+|||+|+.++ .|++.++.+|+ +++ |+++++++|.++++++.. +++.+.+ ++|+|+.++++++++|+
T Consensus 300 ~G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 300 AGKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred cCCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999988 88999988997 443 999999999999998754 4444433 68999999999999986
No 6
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.97 E-value=6.4e-31 Score=242.20 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=169.9
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.||++|+.+.+ ++++++.+| ||+|++.|.+..... ..+. ..++|+|++.++||++.+++++..
T Consensus 145 ~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~~---~~~~----~~i~~~grl~~~Kg~~~li~a~~~ 217 (398)
T cd03796 145 VDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSKR---DNDK----ITIVVISRLVYRKGIDLLVGIIPE 217 (398)
T ss_pred CCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcccC---CCCc----eEEEEEeccchhcCHHHHHHHHHH
Confidence 7899999998754 356789999 999998876543321 1122 379999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
+.+..++++|+|+|+|+..+.++++++++++. +.+.|.+++.+ .+|+.||++|+||..|+||++++||||||+|||
T Consensus 218 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI 297 (398)
T cd03796 218 ICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVV 297 (398)
T ss_pred HHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEE
Confidence 98888999999999999888899999998774 55678887766 999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCCC--ccH----HHHhcCCHHHHHHHHHHHHhccc
Q 023072 150 CANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPAL--PTE----AQRHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~~--~~~----~~~~~~sw~~~~~~~~~~~~~~~ 214 (287)
+++.++ .|++.++..++..+|.++++++|.+++++.... +.. ...++|||+.+++++.++|+...
T Consensus 298 ~s~~gg~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 298 STRVGGIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred ECCCCCchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 999988 788876543333349999999999999875542 222 23368999999999999999544
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=2.2e-30 Score=236.22 Aligned_cols=212 Identities=13% Similarity=0.154 Sum_probs=170.9
Q ss_pred CCCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHh--hcCCCCCCCcEEEEEecccccCHHHHHHH
Q 023072 1 MGFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLEL 70 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~--~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a 70 (287)
++|++|++|+.+.+ ++.+++.+| ||+|++.|.+........ ..........++|+||+.++||++.++++
T Consensus 136 ~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a 215 (374)
T TIGR03088 136 LIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRA 215 (374)
T ss_pred cCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHH
Confidence 37899999998755 245788899 999998886543221110 11111122379999999999999999999
Q ss_pred HHHHHHhcC----CeEEEEEeCCcCHHHHHHHHHhcCCce--EEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhc
Q 023072 71 LDDHQKELA----GLEVDLYGNGEDFNQIQEAAEKLKIVV--RVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAM 144 (287)
Q Consensus 71 ~~~l~~~~~----~~~l~i~G~g~~~~~l~~~~~~~~l~~--~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~ 144 (287)
+..+.+..+ +++|+|+|+|+..+.+++.++++++.. .+.|..++...+|+.||++|+||..|+||++++|||+|
T Consensus 216 ~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~ 295 (374)
T TIGR03088 216 FALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMAS 295 (374)
T ss_pred HHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHc
Confidence 999987655 689999999998888999999888753 33465555559999999999999999999999999999
Q ss_pred CCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHhc
Q 023072 145 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 145 G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 212 (287)
|+|||+|+.++ .|++.++.+|++++ |++++++++.++++++.. .++.+. .++|+|+.+++++.++|+.
T Consensus 296 G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 296 GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999988 88998888898875 999999999999987654 343333 3689999999999999973
No 8
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.97 E-value=1.5e-29 Score=233.14 Aligned_cols=211 Identities=19% Similarity=0.188 Sum_probs=170.3
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.||+.|+.... .+.+++.+| ||+|.+.|.+..........+.....+.|+|+|++.+.||++.++++++.
T Consensus 164 ~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~ 243 (405)
T TIGR03449 164 ADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAE 243 (405)
T ss_pred cCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHH
Confidence 7899999987432 245789999 99999888655322211111111223479999999999999999999999
Q ss_pred HHHhcCC--eEEEEEeCC-----cCHHHHHHHHHhcCCc--eEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 74 HQKELAG--LEVDLYGNG-----EDFNQIQEAAEKLKIV--VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 74 l~~~~~~--~~l~i~G~g-----~~~~~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
+.+..++ ++|+|+|.+ +..+.++++++++++. +.+.|..++.+ ++|+.||++++||..|+||++++|||
T Consensus 244 l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAm 323 (405)
T TIGR03449 244 LLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQ 323 (405)
T ss_pred HHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHH
Confidence 9887776 999999963 3456788888888874 66668887776 99999999999999999999999999
Q ss_pred hcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH---HhcCCHHHHHHHHHHHHhc
Q 023072 143 AMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~---~~~~sw~~~~~~~~~~~~~ 212 (287)
+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. .++.+. .++|+|+.+++++.++|..
T Consensus 324 a~G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 324 ACGTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLLSSYRD 401 (405)
T ss_pred HcCCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999988 88888888998886 999999999999987654 344333 3589999999999999984
No 9
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=2.5e-29 Score=242.69 Aligned_cols=209 Identities=13% Similarity=0.014 Sum_probs=165.2
Q ss_pred eeeeCchhhh-------hccCCcEEee-ccCCCCccccCcchHHH--h-hcCCCCCCCcEEEEEecccccCHHHHHHHHH
Q 023072 4 QVIRLSAATQ-------EYANSIICNV-HGVNPKFLEIGKKKKEQ--Q-QNGTHAFAKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 4 ~Vi~lS~~~~-------~~~~~~i~vi-~gvd~~~~~~~~~~~~~--~-~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
.+|..|..+. +++.+++.+| ||||++.|.+.+..... . ..........|+++||+.+.||++.+++++.
T Consensus 461 i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a 540 (694)
T PRK15179 461 ALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQ 540 (694)
T ss_pred EEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHH
Confidence 4455555432 2456799999 99998877543321110 0 1111112237889999999999999999999
Q ss_pred HHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 73 DHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 73 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
++.+..|+++|+|+|+|+..+.++++++++++. +.|.|..++...+|+.+|+||+||.+|+||++++||||||+|||+
T Consensus 541 ~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVa 620 (694)
T PRK15179 541 RFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVT 620 (694)
T ss_pred HHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEE
Confidence 998888999999999999889999999998874 555587766559999999999999999999999999999999999
Q ss_pred ecCCC-ccccccCCCeEeec--C--HHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHhc
Q 023072 151 ANHPS-NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 151 s~~~~-~e~i~~~~~g~l~~--d--~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 212 (287)
|+.+| .|++.++.+|++++ | +++++++|.+++.+... .++.+. .++|||+.+++++.++|++
T Consensus 621 t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~~lY~~ 693 (694)
T PRK15179 621 TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQM 693 (694)
T ss_pred ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHHHHhCC
Confidence 99988 88999999999986 4 46888998888775433 333332 3689999999999999975
No 10
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1e-29 Score=239.19 Aligned_cols=203 Identities=17% Similarity=0.198 Sum_probs=168.0
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||+|+++|+.... .+++++.+| ||+|++.|.+..... .... ...|+|+|++.+.||++.+++++..+
T Consensus 245 ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~--~~~~----~~~i~~vGrl~~~Kg~~~li~a~~~l 318 (475)
T cd03813 245 ADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRAR--PEKE----PPVVGLIGRVVPIKDIKTFIRAAAIV 318 (475)
T ss_pred CCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccc--cCCC----CcEEEEEeccccccCHHHHHHHHHHH
Confidence 8999999998754 356789999 999999886643311 1112 23799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcC----HHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 75 QKELAGLEVDLYGNGED----FNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
.+..|+++++|+|++++ .++++++++++++ +++|+| ..+..++|+.+|++|+||..|++|++++||||||+||
T Consensus 319 ~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PV 397 (475)
T cd03813 319 RKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPV 397 (475)
T ss_pred HHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCE
Confidence 98889999999999853 4567788888887 455567 4444489999999999999999999999999999999
Q ss_pred EeecCCC-cccccc------CCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHh
Q 023072 149 VCANHPS-NDFFKQ------FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 211 (287)
Q Consensus 149 V~s~~~~-~e~i~~------~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 211 (287)
|+|+.++ .+++.+ +.+|++++ |+++++++|.+++++++. .++++.+ +.|+|+.+.++|.++|+
T Consensus 398 Vatd~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 398 VATDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYRRLYL 475 (475)
T ss_pred EECCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 9999988 888877 45888876 999999999999998765 4444333 57999999999999985
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.97 E-value=1.5e-29 Score=235.87 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=157.3
Q ss_pred CCeeeeCchhh-h-------hccCCcEEee-ccCCCCccccCcchHHH-------hhcCCCCCCCcEEEEEecccccCHH
Q 023072 2 GFQVIRLSAAT-Q-------EYANSIICNV-HGVNPKFLEIGKKKKEQ-------QQNGTHAFAKGAYYIGKMVWSKGYK 65 (287)
Q Consensus 2 ~~~Vi~lS~~~-~-------~~~~~~i~vi-~gvd~~~~~~~~~~~~~-------~~~~~~~~~~~i~~vG~~~~~Kg~~ 65 (287)
+|+||+.|... . +++++++.+| ||||++.|.+....... .........+.|+|+||+.+.||++
T Consensus 185 ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~ 264 (439)
T TIGR02472 185 ASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRRKNIP 264 (439)
T ss_pred CCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCcccCCHH
Confidence 68899988642 1 3567899999 99999988764321100 0011112234799999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEE-EEeCCcCHH-----------HHHHHHHhcCCc--eEEecCCCCHH--HHhhhC----CEE
Q 023072 66 ELLELLDDHQKELAGLEVD-LYGNGEDFN-----------QIQEAAEKLKIV--VRVYPGRDHAD--LIFHDY----KVF 125 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~-i~G~g~~~~-----------~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~a----dv~ 125 (287)
.|++|++.+.......+++ |+|+|++.+ .+..+++++++. +.|.|.+++.+ ++|+.| |+|
T Consensus 265 ~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~ 344 (439)
T TIGR02472 265 SLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIF 344 (439)
T ss_pred HHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEE
Confidence 9999998653222223343 568876532 234456677764 44557766655 889877 999
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hc
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQ 196 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~ 196 (287)
|+||..|+||++++||||||+|||+|+.++ .|++.++.+|++++ |+++++++|.++++++.. .++.+.+ ++
T Consensus 345 v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 424 (439)
T TIGR02472 345 VNPALTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRH 424 (439)
T ss_pred ecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988 88888888999886 999999999999998765 4555443 58
Q ss_pred CCHHHHHHHHHHHHh
Q 023072 197 LSWESATERFLQVAE 211 (287)
Q Consensus 197 ~sw~~~~~~~~~~~~ 211 (287)
|||+.+++++.++.+
T Consensus 425 fsw~~~~~~~~~l~~ 439 (439)
T TIGR02472 425 YSWDAHVEKYLRILQ 439 (439)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998753
No 12
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=2.5e-29 Score=236.61 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=162.9
Q ss_pred CCeeeeCchhhhh-----cc-----CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YA-----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLEL 70 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~-----~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a 70 (287)
+|.||+.|+.+.+ ++ .+++.+| +|+++.++.+.. ..... .|+|+||+.+.||++.+++|
T Consensus 271 ~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~~------~r~~~----~il~vGrl~~~Kg~~~li~A 340 (500)
T TIGR02918 271 IDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPEQ------ERKPF----SIITASRLAKEKHIDWLVKA 340 (500)
T ss_pred CCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCccc------ccCCe----EEEEEeccccccCHHHHHHH
Confidence 6899999997543 22 4678899 998776654311 11222 79999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 71 LDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
+..+.+..|+++|+|+|+|++.+.++++++++++. +.+.|.. +..++|+.||++|+||..|+||++++||||||+||
T Consensus 341 ~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PV 419 (500)
T TIGR02918 341 VVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGM 419 (500)
T ss_pred HHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCE
Confidence 99999889999999999999888999999998774 4445754 44589999999999999999999999999999999
Q ss_pred EeecCC-C-ccccccCCCeEeec-C---------HHHHHHHHHHHHhCCCC-CccHHHH---hcCCHHHHHHHHHHHHh
Q 023072 149 VCANHP-S-NDFFKQFPNCRTYD-D---------RNGFVEATLKALAEEPA-LPTEAQR---HQLSWESATERFLQVAE 211 (287)
Q Consensus 149 V~s~~~-~-~e~i~~~~~g~l~~-d---------~~~l~~~i~~ll~~~~~-~~~~~~~---~~~sw~~~~~~~~~~~~ 211 (287)
|+++.+ | .+++.++.+|++++ + +++++++|.++++++.. +++.+++ ++|+|+.++++|.++++
T Consensus 420 I~~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs~~~v~~~w~~ll~ 498 (500)
T TIGR02918 420 IGFDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFLTANIIEKWKKLVR 498 (500)
T ss_pred EEecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999985 5 88999999999886 2 88999999999953222 4444333 68999999999999886
No 13
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.97 E-value=1.8e-29 Score=232.31 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=161.7
Q ss_pred CCeeeeCchhhhhc-c---CCcEEee-ccCCCCccccCcchHHHhhcCC--CCCCCcEEEEEe-cccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-A---NSIICNV-HGVNPKFLEIGKKKKEQQQNGT--HAFAKGAYYIGK-MVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-~---~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~--~~~~~~i~~vG~-~~~~Kg~~~ll~a~~~ 73 (287)
||.||+.|+.+.+. + .+++.+| ||+|.+.|.+............ ......|+|+|| +.+.||++.+++++..
T Consensus 157 ad~vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~ 236 (396)
T cd03818 157 ADAGVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPR 236 (396)
T ss_pred CCEEECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHH
Confidence 79999999998763 2 3789999 9999998876543221111100 112336999997 9999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcC--------HH-HHHHHHHhcC----C-ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHH
Q 023072 74 HQKELAGLEVDLYGNGED--------FN-QIQEAAEKLK----I-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTT 137 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~--------~~-~l~~~~~~~~----l-~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~ 137 (287)
+.+..|+++|+|+|++.. .+ ..+++.++++ . ++.|+|.+++.+ .+|+.||++|+||..|++|++
T Consensus 237 l~~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~ 316 (396)
T cd03818 237 LLRARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWS 316 (396)
T ss_pred HHHHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchH
Confidence 998889999999997321 11 1222223322 2 567789998877 999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHH
Q 023072 138 TAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 207 (287)
Q Consensus 138 ~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~ 207 (287)
++||||||+|||+|+.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+.+ ++|+|+.++++++
T Consensus 317 llEAmA~G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 317 LLEAMACGCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHHHCCCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999999999999988 88998888999886 999999999999998755 4555444 4699999999886
No 14
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=2.9e-29 Score=233.24 Aligned_cols=198 Identities=15% Similarity=0.078 Sum_probs=156.5
Q ss_pred ccCCcEEee-ccCCCCccccCcchH--HHh--hcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCC
Q 023072 15 YANSIICNV-HGVNPKFLEIGKKKK--EQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG 89 (287)
Q Consensus 15 ~~~~~i~vi-~gvd~~~~~~~~~~~--~~~--~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g 89 (287)
++++++.+| ||||+..|.+..... ... ..+.......|+++|++.+.||+..+++++.++.+..|+++|+|+|+|
T Consensus 359 ip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG 438 (578)
T PRK15490 359 LEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDG 438 (578)
T ss_pred CCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCc
Confidence 577899999 999999877653221 000 111111223688999999999999999999999888899999999999
Q ss_pred cCHHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeE
Q 023072 90 EDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCR 166 (287)
Q Consensus 90 ~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~ 166 (287)
+..+.+++.++++++ ++.|.|..++...+|+.+|+||+||.+|+||++++||||||+|||+|+.++ .|++.++.+|+
T Consensus 439 ~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~ 518 (578)
T PRK15490 439 DLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGF 518 (578)
T ss_pred hhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEE
Confidence 998899999999887 455568766555999999999999999999999999999999999999988 88899999999
Q ss_pred eec--CHHHHHHHHH---HHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHhc
Q 023072 167 TYD--DRNGFVEATL---KALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 167 l~~--d~~~l~~~i~---~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 212 (287)
+++ |++++++++. .+...... .++.+. .++|||+.++++|.++|..
T Consensus 519 LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 519 ILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred EECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 987 7777766652 23322221 233332 3689999999999999984
No 15
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.97 E-value=4e-29 Score=234.69 Aligned_cols=210 Identities=19% Similarity=0.249 Sum_probs=164.5
Q ss_pred CCeeeeCchhhhh-c---------------cCCcEEee-ccCCCCccccCcch------------------HHHhh-cCC
Q 023072 2 GFQVIRLSAATQE-Y---------------ANSIICNV-HGVNPKFLEIGKKK------------------KEQQQ-NGT 45 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~---------------~~~~i~vi-~gvd~~~~~~~~~~------------------~~~~~-~~~ 45 (287)
||+||++|+.... + +.+++.+| ||||.+.|.+.... ..... .+.
T Consensus 198 ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 277 (466)
T PRK00654 198 ADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGL 277 (466)
T ss_pred cCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCC
Confidence 7899999987633 1 24689999 99999988764321 00011 111
Q ss_pred C-CCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHhh
Q 023072 46 H-AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFH 120 (287)
Q Consensus 46 ~-~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~ 120 (287)
. .....|+|+||+.++||++.++++++++.+. +++|+|+|+|+. .+.+++++++++.++.++.+.+... .+|+
T Consensus 278 ~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~ 355 (466)
T PRK00654 278 PDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA 355 (466)
T ss_pred CCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh
Confidence 1 1223799999999999999999999998754 799999999864 4678888888887766654454443 7899
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC------CCeEeec--CHHHHHHHHHHHHhC---CCC-
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALAE---EPA- 187 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~------~~g~l~~--d~~~l~~~i~~ll~~---~~~- 187 (287)
.||++|+||.+|+||++++|||+||+|+|+++.|| .|.+.++ .+|++++ |+++++++|.++++. ++.
T Consensus 356 ~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~~~~~~~~~ 435 (466)
T PRK00654 356 GADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALELYRQPPLW 435 (466)
T ss_pred hCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999988 8888877 7899986 999999999998873 222
Q ss_pred -CccHHHH-hcCCHHHHHHHHHHHHhcc
Q 023072 188 -LPTEAQR-HQLSWESATERFLQVAELD 213 (287)
Q Consensus 188 -~~~~~~~-~~~sw~~~~~~~~~~~~~~ 213 (287)
+++.+.. ++|||+++++++.++|+..
T Consensus 436 ~~~~~~~~~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 436 RALQRQAMAQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 3333333 6899999999999999843
No 16
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.96 E-value=1.4e-28 Score=223.37 Aligned_cols=210 Identities=18% Similarity=0.179 Sum_probs=171.3
Q ss_pred CCCeeeeCchhhhh-----c-cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQE-----Y-ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~-----~-~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
.||.||+.|+.+.+ + ..+++.+| ||+|+..+.+..........+.......++|+|++.+.||++.+++++..
T Consensus 142 ~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~ 221 (371)
T cd04962 142 KSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKRRLGAPEGEKVLIHISNFRPVKRIDDVIRIFAK 221 (371)
T ss_pred hCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHHhcCCCCCCeEEEEecccccccCHHHHHHHHHH
Confidence 37999999998765 2 35678899 99998877654332211111112223468999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
+.+. .+++++|+|+|++.+.+++.+.++++ ++.++|..++..++|+.||++|+||..|++|++++|||+||+|||+|
T Consensus 222 l~~~-~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 222 VRKE-VPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVAS 300 (371)
T ss_pred HHhc-CCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe
Confidence 8765 56999999999998889988888876 45667877666699999999999999999999999999999999999
Q ss_pred cCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHh
Q 023072 152 NHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAE 211 (287)
Q Consensus 152 ~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~ 211 (287)
+.++ .+++.++.+|++++ |.+++++++..+++++.. .++.+. .++|+|+.+++++.+.|+
T Consensus 301 ~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 301 NAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYEALYR 369 (371)
T ss_pred CCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9988 88888888998886 999999999999987664 344432 368999999999999997
No 17
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.96 E-value=5.7e-29 Score=233.70 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=168.3
Q ss_pred CCeeeeCchhhhhc-------cCCcEEee-ccCCCCccccCcchHHHh-hc-CCCCCCCcEEEEEecccccCHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-------ANSIICNV-HGVNPKFLEIGKKKKEQQ-QN-GTHAFAKGAYYIGKMVWSKGYKELLELL 71 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-------~~~~i~vi-~gvd~~~~~~~~~~~~~~-~~-~~~~~~~~i~~vG~~~~~Kg~~~ll~a~ 71 (287)
||.|++.|+.+.+. +.+++.+| ||+|.+.|.+........ .. ........|+|+|++.++||++.+++++
T Consensus 206 ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~ 285 (465)
T PLN02871 206 ADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVM 285 (465)
T ss_pred CCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHH
Confidence 78999999987642 35789999 999999887643322111 11 1111234799999999999999999998
Q ss_pred HHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 72 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
+.+ ++++|+|+|+|+..+.++++++. .++.|+|.+++.+ .+|+.||++|+||..|++|++++||||||+|||
T Consensus 286 ~~~----~~~~l~ivG~G~~~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI 359 (465)
T PLN02871 286 ERL----PGARLAFVGDGPYREELEKMFAG--TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVV 359 (465)
T ss_pred HhC----CCcEEEEEeCChHHHHHHHHhcc--CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEE
Confidence 765 68999999999988888887764 3677889988766 999999999999999999999999999999999
Q ss_pred eecCCC-cccccc---CCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHH-HHhccc
Q 023072 150 CANHPS-NDFFKQ---FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQ-VAELDQ 214 (287)
Q Consensus 150 ~s~~~~-~e~i~~---~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~-~~~~~~ 214 (287)
+++.++ .+++.+ +.+|++++ |+++++++|.++++++.. +++.+.+ ++|+|+.+++++++ .|+...
T Consensus 360 ~s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~ 436 (465)
T PLN02871 360 AARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAI 436 (465)
T ss_pred EcCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999988 788888 88999886 999999999999998665 4554333 58999999999997 698554
No 18
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.96 E-value=1.1e-28 Score=223.76 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=166.6
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||+||+.|+.+.+ ++.+++.++ +|+|++.+.+.... ... ..++|+|++.+.||++.+++++..+
T Consensus 143 ~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~~-----~~~----~~i~~~G~~~~~K~~~~li~a~~~l 213 (367)
T cd05844 143 AALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATPA-----RRP----PRILFVGRFVEKKGPLLLLEAFARL 213 (367)
T ss_pred cCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCCC-----CCC----cEEEEEEeeccccChHHHHHHHHHH
Confidence 7899999999865 345689999 99999877653211 122 2799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCC------CCcchHHHHHHHhc
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST------TDVVCTTTAEALAM 144 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~------~E~~~~~~~EAma~ 144 (287)
.+..++++|+|+|+|+..+.+++.++++++ ++.++|.+++.+ .+|+.||++|+||. .|++|++++|||+|
T Consensus 214 ~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~ 293 (367)
T cd05844 214 ARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQAS 293 (367)
T ss_pred HHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHc
Confidence 888899999999999888889988888655 566678887776 99999999999997 59999999999999
Q ss_pred CCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHH
Q 023072 145 GKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQ 208 (287)
Q Consensus 145 G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~ 208 (287)
|+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. .++.+. .++|+|+.+++++.+
T Consensus 294 G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~~ 366 (367)
T cd05844 294 GVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLEA 366 (367)
T ss_pred CCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 99999999988 78888888998885 999999999999998664 344433 368999999999875
No 19
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.96 E-value=1.8e-28 Score=230.76 Aligned_cols=209 Identities=18% Similarity=0.220 Sum_probs=166.4
Q ss_pred CCeeeeCchhhhh-c---------------cCCcEEee-ccCCCCccccCcch------------------HHHhhcCCC
Q 023072 2 GFQVIRLSAATQE-Y---------------ANSIICNV-HGVNPKFLEIGKKK------------------KEQQQNGTH 46 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~---------------~~~~i~vi-~gvd~~~~~~~~~~------------------~~~~~~~~~ 46 (287)
||+|+++|+...+ + ++.++.+| ||+|.+.|.|.... ......-..
T Consensus 206 ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 285 (473)
T TIGR02095 206 ADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGL 285 (473)
T ss_pred CCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCC
Confidence 7899999997533 1 24689999 99999988764321 001111111
Q ss_pred C---CCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHh
Q 023072 47 A---FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIF 119 (287)
Q Consensus 47 ~---~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~ 119 (287)
. ....|+|+||+.++||++.+++++..+.+. +++|+|+|+|+. .+.+++++.+++.++.++++.+..+ .+|
T Consensus 286 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~ 363 (473)
T TIGR02095 286 PVDDDVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIY 363 (473)
T ss_pred CccCCCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH
Confidence 1 234799999999999999999999999754 599999999952 4678888888877777777776665 799
Q ss_pred hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC------CCeEeec--CHHHHHHHHHHHHh----CCC
Q 023072 120 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF------PNCRTYD--DRNGFVEATLKALA----EEP 186 (287)
Q Consensus 120 ~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~------~~g~l~~--d~~~l~~~i~~ll~----~~~ 186 (287)
+.||++++||.+|+||++++|||+||+|||+++.+| .+.+.++ .+|++++ |+++++++|.+++. ++.
T Consensus 364 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~ 443 (473)
T TIGR02095 364 AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPS 443 (473)
T ss_pred HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999988 8888887 7898886 99999999999887 543
Q ss_pred C--CccHHHH-hcCCHHHHHHHHHHHHhc
Q 023072 187 A--LPTEAQR-HQLSWESATERFLQVAEL 212 (287)
Q Consensus 187 ~--~~~~~~~-~~~sw~~~~~~~~~~~~~ 212 (287)
. +++.+.. ++|||++++++++++|+.
T Consensus 444 ~~~~~~~~~~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 444 LWEALQKNAMSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 3 4444443 589999999999999973
No 20
>PHA01630 putative group 1 glycosyl transferase
Probab=99.96 E-value=2.1e-28 Score=219.64 Aligned_cols=195 Identities=16% Similarity=0.134 Sum_probs=152.0
Q ss_pred CCeeeeCchhhhhc------c-CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY------A-NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~------~-~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|+||+.|+.+.+. + ++++.+| ||||++.|.+..... .... .++|+|++.++||++.|+++++.
T Consensus 95 ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~~----~~~~----vl~~~g~~~~~Kg~d~Li~A~~~ 166 (331)
T PHA01630 95 VDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKEK----PHPC----VLAILPHSWDRKGGDIVVKIFHE 166 (331)
T ss_pred CCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCcccc----CCCE----EEEEeccccccCCHHHHHHHHHH
Confidence 79999999998652 2 4588999 999999886543211 1111 45677788999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
+.+..++++++|+|++.....+. ++. .+.+..++.+ .+|+.||+||+||+.|+||++++||||||+|||+|
T Consensus 167 l~~~~~~~~llivG~~~~~~~l~------~~~-~~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas 239 (331)
T PHA01630 167 LQNEGYDFYFLIKSSNMLDPRLF------GLN-GVKTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVT 239 (331)
T ss_pred HHhhCCCEEEEEEeCcccchhhc------ccc-ceeccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEe
Confidence 98888899999999765432221 222 1334566666 99999999999999999999999999999999999
Q ss_pred cCCC-ccccccCCCeEee--------------------c-CHHHHHHHHHHHHhCC--CC--C-ccH---HHHhcCCHHH
Q 023072 152 NHPS-NDFFKQFPNCRTY--------------------D-DRNGFVEATLKALAEE--PA--L-PTE---AQRHQLSWES 201 (287)
Q Consensus 152 ~~~~-~e~i~~~~~g~l~--------------------~-d~~~l~~~i~~ll~~~--~~--~-~~~---~~~~~~sw~~ 201 (287)
+.+| .|++.++.||+++ + |.+++++++.+++.++ +. . +.. ...++|||++
T Consensus 240 ~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ 319 (331)
T PHA01630 240 EKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNA 319 (331)
T ss_pred CCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988 8889888776654 3 7889999999999874 22 1 111 2347999999
Q ss_pred HHHHHHHHHh
Q 023072 202 ATERFLQVAE 211 (287)
Q Consensus 202 ~~~~~~~~~~ 211 (287)
++++++++|+
T Consensus 320 ia~k~~~l~~ 329 (331)
T PHA01630 320 IAKMWEKILE 329 (331)
T ss_pred HHHHHHHHHh
Confidence 9999999996
No 21
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.96 E-value=2e-28 Score=226.44 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=168.0
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchH---HHhhcCCCCCCCcEEEEEecccccCHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKK---EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELL 71 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~---~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~ 71 (287)
+|.||++|+++.+ ++.+++.+| ||+|.+.|.+..... .....+.......++|+|++.+.||++.|++++
T Consensus 172 ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~ 251 (412)
T PRK10307 172 FDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAA 251 (412)
T ss_pred CCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHH
Confidence 7899999999865 345689999 999998876543211 111111111224799999999999999999999
Q ss_pred HHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEEecCCCCHH--HHhhhCCEEEcCCCCCc----chHHHHHHHhc
Q 023072 72 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDV----VCTTTAEALAM 144 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~--~~~~~adv~v~ps~~E~----~~~~~~EAma~ 144 (287)
..+. ..++++|+|+|+|+..+.++++++++++ +++|+|..++.+ .+|+.||++|+||..|+ +|.+++|||||
T Consensus 252 ~~l~-~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~ 330 (412)
T PRK10307 252 RRLR-DRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLAS 330 (412)
T ss_pred HHhc-cCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHc
Confidence 9885 4578999999999988899999888776 566678887766 99999999999999988 68889999999
Q ss_pred CCeEEeecCCC---ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHhcc
Q 023072 145 GKIVVCANHPS---NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELD 213 (287)
Q Consensus 145 G~PVV~s~~~~---~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~ 213 (287)
|+|||+|+.++ .+++. .+|++++ |+++++++|.++++++.. .++.+++ ++|||+.+++++.++|+..
T Consensus 331 G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 331 GRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred CCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 99999999865 35555 4898875 999999999999988655 5555444 5899999999999999844
Q ss_pred c
Q 023072 214 Q 214 (287)
Q Consensus 214 ~ 214 (287)
.
T Consensus 409 ~ 409 (412)
T PRK10307 409 V 409 (412)
T ss_pred h
Confidence 3
No 22
>PLN02939 transferase, transferring glycosyl groups
Probab=99.96 E-value=3.1e-28 Score=236.73 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=165.2
Q ss_pred CCeeeeCchhhhh---------------ccCCcEEee-ccCCCCccccCcch------------------HHHhhcCCCC
Q 023072 2 GFQVIRLSAATQE---------------YANSIICNV-HGVNPKFLEIGKKK------------------KEQQQNGTHA 47 (287)
Q Consensus 2 ~~~Vi~lS~~~~~---------------~~~~~i~vi-~gvd~~~~~~~~~~------------------~~~~~~~~~~ 47 (287)
||+|+++|+.... ..+.++.+| ||+|++.|.|.... ......-..+
T Consensus 694 AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~ 773 (977)
T PLN02939 694 SNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLS 773 (977)
T ss_pred CCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCC
Confidence 7999999998532 235688999 99999988875421 1111111111
Q ss_pred ----CCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC---HHHHHHHHHhcCC--ceEEecCCCCHH--
Q 023072 48 ----FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI--VVRVYPGRDHAD-- 116 (287)
Q Consensus 48 ----~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l--~~~v~g~~~~~~-- 116 (287)
..+.|+||||+.+.||++.+++++..+.. ++++|+|+|+|++ .+.++.++.+++. ++.|+|.+++..
T Consensus 774 ~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah 851 (977)
T PLN02939 774 SADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSH 851 (977)
T ss_pred cccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHH
Confidence 12469999999999999999999988864 4789999999976 3567888888876 466678887765
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-cccccc---------CCCeEeec--CHHHHHHHHHHHHh-
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ---------FPNCRTYD--DRNGFVEATLKALA- 183 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~---------~~~g~l~~--d~~~l~~~i~~ll~- 183 (287)
.+|+.||+||+||++|+||++++|||+||+|+|++++|| .+.|.+ +.||++++ |+++|+++|.+++.
T Consensus 852 ~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~ 931 (977)
T PLN02939 852 SIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNY 931 (977)
T ss_pred HHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999988 777754 46899886 99999999999876
Q ss_pred ---CCCC--CccHHH-HhcCCHHHHHHHHHHHHhccc
Q 023072 184 ---EEPA--LPTEAQ-RHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 184 ---~~~~--~~~~~~-~~~~sw~~~~~~~~~~~~~~~ 214 (287)
++.. .++.+. .++|||+.++++|.++|+...
T Consensus 932 ~~~dpe~~~~L~~~am~~dFSWe~~A~qYeeLY~~ll 968 (977)
T PLN02939 932 YKRKPEVWKQLVQKDMNIDFSWDSSASQYEELYQRAV 968 (977)
T ss_pred hccCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3332 344433 368999999999999998544
No 23
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.96 E-value=2.4e-28 Score=223.80 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=163.7
Q ss_pred CCCeeeeCchhhhhc-----c---CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY-----A---NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELL 71 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~-----~---~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~ 71 (287)
.+|.|++.|+.+.++ + ..++.+| ||+|.+.|.+..................++|+|++.+.||++.+++++
T Consensus 154 ~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~ 233 (392)
T cd03805 154 MADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGLLIPKSGKKTFLSINRFERKKNIALAIEAF 233 (392)
T ss_pred CceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccccccCCCceEEEEEeeecccCChHHHHHHH
Confidence 378999999988652 2 1234578 999998886543321111111112234799999999999999999999
Q ss_pred HHHHHhc---CCeEEEEEeCCcCH--------HHHHHHHHh-cCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcch
Q 023072 72 DDHQKEL---AGLEVDLYGNGEDF--------NQIQEAAEK-LKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 72 ~~l~~~~---~~~~l~i~G~g~~~--------~~l~~~~~~-~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~ 135 (287)
.++.+.. ++++|+|+|+|+.. +++++.+++ +++ ++.|+|.+++.+ .+|+.||++++||..|+||
T Consensus 234 ~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g 313 (392)
T cd03805 234 AILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFG 313 (392)
T ss_pred HHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCC
Confidence 9998876 79999999988652 678888888 666 566679988777 8999999999999999999
Q ss_pred HHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHH
Q 023072 136 TTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERF 206 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~ 206 (287)
++++||||||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. +++.+. .++|+|+.+++++
T Consensus 314 ~~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 314 IVPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred chHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 99999999999999999988 88888888898876 999999999999998754 444433 3689999998763
No 24
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.96 E-value=3.7e-28 Score=234.82 Aligned_cols=196 Identities=11% Similarity=0.143 Sum_probs=150.0
Q ss_pred cCCcEEee-ccCCCCccccCcchHHHh-------------------hcCC--CCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 16 ANSIICNV-HGVNPKFLEIGKKKKEQQ-------------------QNGT--HAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 16 ~~~~i~vi-~gvd~~~~~~~~~~~~~~-------------------~~~~--~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
++.|+.+| +|+|++.|.+........ ..+. ....+.|+++||+.+.||++.|++++.+
T Consensus 495 ~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~ 574 (784)
T TIGR02470 495 FDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNKPIIFSMARLDRVKNLTGLVECYGR 574 (784)
T ss_pred CcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCCCCcEEEEEeCCCccCCHHHHHHHHHH
Confidence 45789999 999999887654322110 0000 1122368999999999999999999998
Q ss_pred HHHhcCCeEEEEEeCCcC------------HHHHHHHHHhcCCceE--EecCC-CCHH--HHhh----hCCEEEcCCCCC
Q 023072 74 HQKELAGLEVDLYGNGED------------FNQIQEAAEKLKIVVR--VYPGR-DHAD--LIFH----DYKVFLNPSTTD 132 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~------------~~~l~~~~~~~~l~~~--v~g~~-~~~~--~~~~----~adv~v~ps~~E 132 (287)
+....++++|+|+|++.+ .+.+.++++++++..+ +.|.. +..+ ++|+ .+|+||+||++|
T Consensus 575 l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~E 654 (784)
T TIGR02470 575 SPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYE 654 (784)
T ss_pred hHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCccc
Confidence 866666899999997642 2356678888887544 45754 3322 5665 247999999999
Q ss_pred cchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHh----CCCC--CccHHHH----hcCCH
Q 023072 133 VVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA----EEPA--LPTEAQR----HQLSW 199 (287)
Q Consensus 133 ~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~----~~~~--~~~~~~~----~~~sw 199 (287)
+||++++||||||+|||+|+.|| .+++.++.+|++++ |+++++++|.++++ ++.. .++.+++ ++|||
T Consensus 655 pFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW 734 (784)
T TIGR02470 655 AFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTW 734 (784)
T ss_pred CCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999 89999999999987 99999999999873 4333 4555433 58999
Q ss_pred HHHHHHHHHHHh
Q 023072 200 ESATERFLQVAE 211 (287)
Q Consensus 200 ~~~~~~~~~~~~ 211 (287)
+.++++++.+..
T Consensus 735 ~~~A~~ll~l~~ 746 (784)
T TIGR02470 735 KIYSERLLTLAG 746 (784)
T ss_pred HHHHHHHHHHHh
Confidence 999999998775
No 25
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=212.19 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=172.0
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
.|++|.+|..-.+ ++++++.+| |.++++.|.|..... ...... .++.+||+.++||+|.+++.+++
T Consensus 146 id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~--~S~~i~----~ivv~sRLvyrKGiDll~~iIp~ 219 (426)
T KOG1111|consen 146 IDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADK--PSADII----TIVVASRLVYRKGIDLLLEIIPS 219 (426)
T ss_pred CCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCcccc--CCCCee----EEEEEeeeeeccchHHHHHHHHH
Confidence 4788888887654 678999999 999999998854432 011112 79999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCce--EEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV--RVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~--~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
+++++|+++|+|+|+||....+++..+++.+.. .++|.++|.+ +.|..-|+|++||.+|.||++++|||+||+|||
T Consensus 220 vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VV 299 (426)
T KOG1111|consen 220 VCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVV 299 (426)
T ss_pred HHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999998888888888877754 4569999998 999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC---CccHHHHhcCCHHHHHHHHHHHHhcccc
Q 023072 150 CANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA---LPTEAQRHQLSWESATERFLQVAELDQA 215 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~---~~~~~~~~~~sw~~~~~~~~~~~~~~~~ 215 (287)
+|+.|| .|++-.+ .-++.+ ++++++++++++++.... .+.+...+.|+|++++++.+++|.....
T Consensus 300 sTrVGGIpeVLP~d-~i~~~~~~~~dl~~~v~~ai~~~~~~p~~~h~~v~~~y~w~dVa~rTekvy~r~~~ 369 (426)
T KOG1111|consen 300 STRVGGIPEVLPED-MITLGEPGPDDLVGAVEKAITKLRTLPLEFHDRVKKMYSWKDVAERTEKVYDRAAT 369 (426)
T ss_pred EeecCCccccCCcc-ceeccCCChHHHHHHHHHHHHHhccCchhHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999 7777663 222333 899999999999886554 2344555789999999999999996553
No 26
>PRK14099 glycogen synthase; Provisional
Probab=99.96 E-value=4.4e-28 Score=227.98 Aligned_cols=211 Identities=17% Similarity=0.178 Sum_probs=159.6
Q ss_pred CCeeeeCchhhhh-c---------------cCCcEEee-ccCCCCccccCcchH------------------HHhhcCCC
Q 023072 2 GFQVIRLSAATQE-Y---------------ANSIICNV-HGVNPKFLEIGKKKK------------------EQQQNGTH 46 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~---------------~~~~i~vi-~gvd~~~~~~~~~~~------------------~~~~~~~~ 46 (287)
||+|+++|+...+ + ..+++.+| ||||++.|.+..... .....-..
T Consensus 210 ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl 289 (485)
T PRK14099 210 ADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGL 289 (485)
T ss_pred cCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCC
Confidence 7899999999743 1 24689999 999999887754311 01111111
Q ss_pred C---CCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEE-ecCCCCHHHHh-
Q 023072 47 A---FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRV-YPGRDHADLIF- 119 (287)
Q Consensus 47 ~---~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v-~g~~~~~~~~~- 119 (287)
+ ....++++||+.++||++.+++++..+.+. +++|+|+|+|+. .+.+++++++++.++.+ .|..+....+|
T Consensus 290 ~~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~--~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~ 367 (485)
T PRK14099 290 DPDPDALLLGVISRLSWQKGLDLLLEALPTLLGE--GAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQ 367 (485)
T ss_pred CcccCCcEEEEEecCCccccHHHHHHHHHHHHhc--CcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHH
Confidence 1 123678999999999999999999988643 789999999874 56788888887756543 46522222555
Q ss_pred hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC---------CCeEeec--CHHHHHHHHHH---HHhC
Q 023072 120 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLK---ALAE 184 (287)
Q Consensus 120 ~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~---------~~g~l~~--d~~~l~~~i~~---ll~~ 184 (287)
+.||+||+||.+|+||++++|||+||+|+|++++|| .|.+.++ .+|++++ |+++++++|.+ ++++
T Consensus 368 a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~d 447 (485)
T PRK14099 368 AGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFAD 447 (485)
T ss_pred hcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999888899988 7877664 5799886 99999999997 5555
Q ss_pred CCC--CccHHHH-hcCCHHHHHHHHHHHHhccc
Q 023072 185 EPA--LPTEAQR-HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 185 ~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 214 (287)
++. +++.+.+ ++|||++++++++++|+...
T Consensus 448 ~~~~~~l~~~~~~~~fSw~~~a~~y~~lY~~l~ 480 (485)
T PRK14099 448 PVAWRRLQRNGMTTDVSWRNPAQHYAALYRSLV 480 (485)
T ss_pred HHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHH
Confidence 443 3444333 68999999999999998543
No 27
>PRK14098 glycogen synthase; Provisional
Probab=99.96 E-value=5.2e-28 Score=227.71 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=165.0
Q ss_pred CCeeeeCchhhhh-c----------------cCCcEEee-ccCCCCccccCcchH------------------HHhh-cC
Q 023072 2 GFQVIRLSAATQE-Y----------------ANSIICNV-HGVNPKFLEIGKKKK------------------EQQQ-NG 44 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~----------------~~~~i~vi-~gvd~~~~~~~~~~~------------------~~~~-~~ 44 (287)
||+|++.|+...+ + ...++.+| ||||.+.|.|..... .... .+
T Consensus 221 ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~~~lg 300 (489)
T PRK14098 221 ADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALLEEVG 300 (489)
T ss_pred cCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHHHHhC
Confidence 7899999998753 1 14689999 999999887654311 0000 00
Q ss_pred CC--CCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HH
Q 023072 45 TH--AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LI 118 (287)
Q Consensus 45 ~~--~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~ 118 (287)
.. .....|+|+||+.+.||++.+++++..+.+ ++++|+|+|+|+. .+.+++++++++.++.+.+.+++.+ .+
T Consensus 301 l~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 301 LPFDEETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCCccCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 00 112379999999999999999999999875 3799999999875 4678888888877788888887765 89
Q ss_pred hhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-cccccc----CCCeEeec--CHHHHHHHHHHHHh---CCCC-
Q 023072 119 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ----FPNCRTYD--DRNGFVEATLKALA---EEPA- 187 (287)
Q Consensus 119 ~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~----~~~g~l~~--d~~~l~~~i~~ll~---~~~~- 187 (287)
|+.||+|++||.+|+||++.+|||+||+|+|+++.|| .+.+.+ +.+|++++ |+++++++|.+++. +++.
T Consensus 379 ~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~~~~~~ 458 (489)
T PRK14098 379 IAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYHDEERW 458 (489)
T ss_pred HHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHcCHHHH
Confidence 9999999999999999999999999999999999988 666653 56899886 99999999998763 3222
Q ss_pred -CccHHH-HhcCCHHHHHHHHHHHHhcc
Q 023072 188 -LPTEAQ-RHQLSWESATERFLQVAELD 213 (287)
Q Consensus 188 -~~~~~~-~~~~sw~~~~~~~~~~~~~~ 213 (287)
.+..+. .++|||+.++++++++|+..
T Consensus 459 ~~~~~~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 459 EELVLEAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 222222 25899999999999999843
No 28
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.96 E-value=8.3e-28 Score=219.96 Aligned_cols=208 Identities=16% Similarity=0.190 Sum_probs=162.7
Q ss_pred CCeeeeCchhhhh--------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE--------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 2 ~~~Vi~lS~~~~~--------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
+|.||+.|+.+.+ ++.+++.+| ||+|++.+.+..........+.......++|+|++.+.||++.++++++
T Consensus 145 ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~ 224 (388)
T TIGR02149 145 ADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVLDRYGIDRSRPYILFVGRITRQKGVPHLLDAVH 224 (388)
T ss_pred CCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHHHHhCCCCCceEEEEEcccccccCHHHHHHHHH
Confidence 7899999998754 245789999 9999998876533322222211122337999999999999999999999
Q ss_pred HHHHhcCCeEEEEEeCCcCH----HHHHHHHHhcCC---ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 73 DHQKELAGLEVDLYGNGEDF----NQIQEAAEKLKI---VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 73 ~l~~~~~~~~l~i~G~g~~~----~~l~~~~~~~~l---~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
.+. ++++++|+|+|++. +.+++.+.+++. ++.++ +.+++.+ .+|+.||++|+||..|++|++++|||
T Consensus 225 ~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~ 301 (388)
T TIGR02149 225 YIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAM 301 (388)
T ss_pred HHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHH
Confidence 884 46889998877653 445555666554 24555 4566666 99999999999999999999999999
Q ss_pred hcCCeEEeecCCC-ccccccCCCeEeec--CH------HHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHH
Q 023072 143 AMGKIVVCANHPS-NDFFKQFPNCRTYD--DR------NGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 207 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~------~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~ 207 (287)
+||+|||+++.++ .+++.++.+|++++ |. ++++++|.++++++.. +++.+. .++|+|+.+++++.
T Consensus 302 a~G~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 381 (388)
T TIGR02149 302 ACGTPVVASATGGIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV 381 (388)
T ss_pred HcCCCEEEeCCCCHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999988 88888888998886 66 8999999999998665 444433 35799999999999
Q ss_pred HHHhc
Q 023072 208 QVAEL 212 (287)
Q Consensus 208 ~~~~~ 212 (287)
++|+.
T Consensus 382 ~~y~~ 386 (388)
T TIGR02149 382 EMYRK 386 (388)
T ss_pred HHHHh
Confidence 99974
No 29
>PLN02949 transferase, transferring glycosyl groups
Probab=99.96 E-value=1.2e-27 Score=223.27 Aligned_cols=206 Identities=13% Similarity=0.084 Sum_probs=163.2
Q ss_pred CCCeeeeCchhhhhc-----c-CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY-----A-NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~-----~-~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
++|.||+.|+.+.+. . ++++.++ +|+|.+.+...+... ..+ ...++|+||+.++||++.+|+++..
T Consensus 220 ~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~~~---~~~----~~~il~vGR~~~~Kg~~llI~A~~~ 292 (463)
T PLN02949 220 CAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPLER---SED----PPYIISVAQFRPEKAHALQLEAFAL 292 (463)
T ss_pred CCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCccc---cCC----CCEEEEEEeeeccCCHHHHHHHHHH
Confidence 479999999999752 2 3578888 999976553211110 111 2369999999999999999999998
Q ss_pred HHHh----cCCeEEEEEeCCcC------HHHHHHHHHhcCCc--eEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHH
Q 023072 74 HQKE----LAGLEVDLYGNGED------FNQIQEAAEKLKIV--VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 139 (287)
Q Consensus 74 l~~~----~~~~~l~i~G~g~~------~~~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~ 139 (287)
+.+. .++++|+|+|++.. .++++++++++++. +.|.|..++.+ ++|+.|+++|+||..|+||++++
T Consensus 293 l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvl 372 (463)
T PLN02949 293 ALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVV 372 (463)
T ss_pred HHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHH
Confidence 7653 46899999998742 25688888888874 66678888777 99999999999999999999999
Q ss_pred HHHhcCCeEEeecCCC--cccccc---CCCeEeecCHHHHHHHHHHHHhCCCC---CccHHHH---hcCCHHHHHHHHHH
Q 023072 140 EALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQ 208 (287)
Q Consensus 140 EAma~G~PVV~s~~~~--~e~i~~---~~~g~l~~d~~~l~~~i~~ll~~~~~---~~~~~~~---~~~sw~~~~~~~~~ 208 (287)
||||||+|||+++.+| .+++.+ +.+|++++|+++++++|.+++++++. +++.+.+ ++|||+.+.+++.+
T Consensus 373 EAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 373 EYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HHHHcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999999988 366654 56789999999999999999986433 4444333 58999999999999
Q ss_pred HHhcc
Q 023072 209 VAELD 213 (287)
Q Consensus 209 ~~~~~ 213 (287)
.|+..
T Consensus 453 ~i~~l 457 (463)
T PLN02949 453 AIRPI 457 (463)
T ss_pred HHHHH
Confidence 98843
No 30
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.96 E-value=1.7e-27 Score=217.32 Aligned_cols=210 Identities=11% Similarity=-0.010 Sum_probs=156.9
Q ss_pred CCeeeeCchh-hhh-ccCCcEEee-ccCCCCcccc-Ccch----HHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAA-TQE-YANSIICNV-HGVNPKFLEI-GKKK----KEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~-~~~-~~~~~i~vi-~gvd~~~~~~-~~~~----~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.++..|.. ... ++.+++ +| ||+|+..... .... ......+.....+.|+|+||+.+.||++.+++++..
T Consensus 136 ~d~~i~~~~~~~~~~~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~ 214 (372)
T cd03792 136 YDAAVFHLPEYVPPQVPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRK 214 (372)
T ss_pred CCEEeecHHHhcCCCCCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHH
Confidence 5667766632 222 444555 78 9999763211 1111 111111112233479999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCH----H-HHHHHHHhcCC--ceEEecCC--CCHH--HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 74 HQKELAGLEVDLYGNGEDF----N-QIQEAAEKLKI--VVRVYPGR--DHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~----~-~l~~~~~~~~l--~~~v~g~~--~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
+.+..++++|+|+|+|+.. . .++++.+..++ ++.++|.. ++.+ .+|+.||+|++||..|+||++++|||
T Consensus 215 l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~ 294 (372)
T cd03792 215 VKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEAL 294 (372)
T ss_pred HHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHH
Confidence 9887789999999998641 2 23444433443 56666665 5555 89999999999999999999999999
Q ss_pred hcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHhc
Q 023072 143 AMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 212 (287)
|||+|||+|+.++ .+++.++.+|+++++.++++.+|.+++++++. .++.+. .++|+|+.++++++++|+.
T Consensus 295 a~G~Pvv~s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 295 WKGKPVIAGPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred HcCCCEEEcCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9999999999988 88888889999999999999999999988654 444433 3589999999999999974
No 31
>PLN02316 synthase/transferase
Probab=99.96 E-value=2.7e-27 Score=233.69 Aligned_cols=210 Identities=18% Similarity=0.168 Sum_probs=163.3
Q ss_pred CCeeeeCchhhhh-------cc--CCcEEee-ccCCCCccccCcch-------------------HHHhhcCCCC--CCC
Q 023072 2 GFQVIRLSAATQE-------YA--NSIICNV-HGVNPKFLEIGKKK-------------------KEQQQNGTHA--FAK 50 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~--~~~i~vi-~gvd~~~~~~~~~~-------------------~~~~~~~~~~--~~~ 50 (287)
||+|+++|+.... +. .+++.+| ||||++.|.|.... ......-.++ ..+
T Consensus 762 AD~ViTVS~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~p 841 (1036)
T PLN02316 762 ADKATTVSPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLP 841 (1036)
T ss_pred CCEEEeCCHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCe
Confidence 7999999998742 22 3789999 99999987654211 0001111111 224
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC---HHHHHHHHHhcCC----ceEEecCCCCHH--HHhhh
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI----VVRVYPGRDHAD--LIFHD 121 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l----~~~v~g~~~~~~--~~~~~ 121 (287)
.|+||||+.+.||++.|++|+..+.+ .+++|+|+|+|++ ...+++++.++++ ++.|++.++... .+|+.
T Consensus 842 lVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaa 919 (1036)
T PLN02316 842 LVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAG 919 (1036)
T ss_pred EEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHh
Confidence 79999999999999999999998865 3799999999976 3567788887654 455667766553 79999
Q ss_pred CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC-------------CCeEeec--CHHHHHHHHHHHHhCC
Q 023072 122 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF-------------PNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 122 adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~-------------~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
||+||+||++|+||++.+|||+||+|+|++++|| .+.|.++ .+|++++ |+++++.+|.+++.+.
T Consensus 920 ADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~ 999 (1036)
T PLN02316 920 ADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAW 999 (1036)
T ss_pred CcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999 8888763 5899987 9999999999999874
Q ss_pred CC---CccHHH----HhcCCHHHHHHHHHHHHhcc
Q 023072 186 PA---LPTEAQ----RHQLSWESATERFLQVAELD 213 (287)
Q Consensus 186 ~~---~~~~~~----~~~~sw~~~~~~~~~~~~~~ 213 (287)
.. .++... .++|||+.++++|+++|+..
T Consensus 1000 ~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 1000 YDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 22 223322 25899999999999999853
No 32
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.96 E-value=1.3e-27 Score=220.04 Aligned_cols=203 Identities=17% Similarity=0.143 Sum_probs=156.8
Q ss_pred CCeeeeCchhhhhc-------cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHH----H
Q 023072 2 GFQVIRLSAATQEY-------ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL----E 69 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-------~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll----~ 69 (287)
||.||++|+...+. .++++.+| ||+|++.|.+....... .......++|+|++.++||++.++ +
T Consensus 173 ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~~----~~~~~~~ilf~G~l~~~k~~~~l~~~~~~ 248 (397)
T TIGR03087 173 FDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPNP----YPPGKRVLVFTGAMDYWPNIDAVVWFAER 248 (397)
T ss_pred CCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccCC----CCCCCcEEEEEEecCCccCHHHHHHHHHH
Confidence 78999999987542 24688999 99999988654322110 011123799999999999999988 5
Q ss_pred HHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC-CCcchHHHHHHHhcCCeE
Q 023072 70 LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST-TDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 70 a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~-~E~~~~~~~EAma~G~PV 148 (287)
++..+.+..|+++|+|+|+|++ ..++++.. ..++.++|.+++...+|+.||++|+||. .||+|++++||||||+||
T Consensus 249 ~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~--~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PV 325 (397)
T TIGR03087 249 VFPAVRARRPAAEFYIVGAKPS-PAVRALAA--LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPV 325 (397)
T ss_pred HHHHHHHHCCCcEEEEECCCCh-HHHHHhcc--CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCE
Confidence 5666777789999999999886 34444332 2357788988876699999999999997 499999999999999999
Q ss_pred EeecCCCccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHh
Q 023072 149 VCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 211 (287)
Q Consensus 149 V~s~~~~~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 211 (287)
|+|+.++..+.....+|++++ |+++++++|.++++|+.. .++.+++ ++|+|+.+++++.++|+
T Consensus 326 V~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 326 VASPEAAEGIDALPGAELLVAADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred EecCcccccccccCCcceEeCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 999986543433344677665 999999999999998764 4555443 58999999999999886
No 33
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.96 E-value=2.3e-27 Score=215.71 Aligned_cols=202 Identities=16% Similarity=0.176 Sum_probs=162.1
Q ss_pred CCCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEeccc--ccCHHHHHHHH
Q 023072 1 MGFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW--SKGYKELLELL 71 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~--~Kg~~~ll~a~ 71 (287)
.||.++++|+.+++ ++++++.+| ||+|.+.+...... ... ...++|+||+.+ .||++.+++++
T Consensus 133 ~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~~----~~~----~~~i~~~Grl~~~~~k~~~~l~~a~ 204 (359)
T PRK09922 133 CADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPPE----RDK----PAVFLYVGRLKFEGQKNVKELFDGL 204 (359)
T ss_pred cCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCcc----cCC----CcEEEEEEEEecccCcCHHHHHHHH
Confidence 37899999999865 345789999 99996543221111 111 237999999864 59999999999
Q ss_pred HHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCH--H--HHhhhCCEEEcCCCCCcchHHHHHHHhcC
Q 023072 72 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHA--D--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~--~--~~~~~adv~v~ps~~E~~~~~~~EAma~G 145 (287)
.++. ++++|+|+|+|++.+.+++.++++++ ++.|+|..++. + ++|+.+|++|+||.+|+||++++||||||
T Consensus 205 ~~~~---~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G 281 (359)
T PRK09922 205 SQTT---GEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYG 281 (359)
T ss_pred HhhC---CCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcC
Confidence 8773 47999999999999999999998876 46667877553 2 77889999999999999999999999999
Q ss_pred CeEEeec-CCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCCCc---cHHHHhcCCHHHHHHHHHHHHhcc
Q 023072 146 KIVVCAN-HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALP---TEAQRHQLSWESATERFLQVAELD 213 (287)
Q Consensus 146 ~PVV~s~-~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~~~---~~~~~~~~sw~~~~~~~~~~~~~~ 213 (287)
+|||+++ .++ .+++.++.+|++++ |+++++++|.++++++..+. ......+|+-+..++++.+.|+..
T Consensus 282 ~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (359)
T PRK09922 282 IPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEVLYFKNLNNALFSK 356 (359)
T ss_pred CCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999 677 78898889998875 99999999999999987532 123336888899999999988743
No 34
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.95 E-value=2.5e-27 Score=211.87 Aligned_cols=194 Identities=13% Similarity=0.115 Sum_probs=159.1
Q ss_pred CCeeeeCchhhhhccC--CcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhc
Q 023072 2 GFQVIRLSAATQEYAN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 78 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~--~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~ 78 (287)
.+.++..|+.....-. +++.+| ||+|++.|.+... .. ..++|+|++.+.||++.+++++..
T Consensus 132 ~~~~~~~s~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~-------~~----~~i~~~Gr~~~~Kg~~~li~~~~~----- 195 (335)
T cd03802 132 DVPFVSISDAQRRPWPPLPWVATVHNGIDLDDYPFRGP-------KG----DYLLFLGRISPEKGPHLAIRAARR----- 195 (335)
T ss_pred CCeEEEecHHHHhhcccccccEEecCCcChhhCCCCCC-------CC----CEEEEEEeeccccCHHHHHHHHHh-----
Confidence 3568889998876433 588999 9999998865211 12 269999999999999999998753
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhc---CCceEEecCCCCHH--HHhhhCCEEEcCCCC-CcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKL---KIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~---~l~~~v~g~~~~~~--~~~~~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+++|+|+|.|++.+.+....... ..++.++|.+++.+ .+|+.+|++++||.. |+||++++||||||+|||+++
T Consensus 196 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~ 275 (335)
T cd03802 196 AGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFR 275 (335)
T ss_pred cCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeC
Confidence 479999999998766666555444 35777889988776 899999999999985 999999999999999999999
Q ss_pred CCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHh
Q 023072 153 HPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 153 ~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
.++ .+++.++.+|++++++++++++|.++...+.....+...++|+|+.++++++++|+
T Consensus 276 ~~~~~e~i~~~~~g~l~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 276 RGAVPEVVEDGVTGFLVDSVEELAAAVARADRLDRAACRRRAERRFSAARMVDDYLALYR 335 (335)
T ss_pred CCCchhheeCCCcEEEeCCHHHHHHHHHHHhccHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 988 88888888999999999999999998765433333345579999999999999985
No 35
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.95 E-value=2.6e-27 Score=218.84 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=162.0
Q ss_pred CCeeeeCchhhhhc-------cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-------ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-------~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|+||++|+...++ ..+++.++ +|++...+.+... ..+. ..++|+|++.+.||++.+++++..
T Consensus 184 ~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~~-----~~~~----~~il~~Grl~~~Kg~~~li~a~~~ 254 (407)
T cd04946 184 LDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKPS-----KDDT----LRIVSCSYLVPVKRVDLIIKALAA 254 (407)
T ss_pred CCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCCC-----CCCC----EEEEEeeccccccCHHHHHHHHHH
Confidence 78999999987542 34678899 9999876644311 1122 279999999999999999999999
Q ss_pred HHHhcC--CeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHH--HHhhh--CCEEEcCCCCCcchHHHHHHHhcC
Q 023072 74 HQKELA--GLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHAD--LIFHD--YKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 74 l~~~~~--~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~--~~~~~--adv~v~ps~~E~~~~~~~EAma~G 145 (287)
+.+..| ++.++++|+|++.+.+++++++.+.+ +.++|.+++.+ .+|+. +|++++||..|++|++++||||||
T Consensus 255 l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G 334 (407)
T cd04946 255 LAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFG 334 (407)
T ss_pred HHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcC
Confidence 988876 56678899999888899888776654 55579898877 78865 789999999999999999999999
Q ss_pred CeEEeecCCC-ccccccCCCeEeec---CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHH
Q 023072 146 KIVVCANHPS-NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 207 (287)
Q Consensus 146 ~PVV~s~~~~-~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~ 207 (287)
+|||+|+.|| .|++.++.+|++++ |+++++++|.++++++.. .++.+++ ++|+|+...+++.
T Consensus 335 ~PVIas~vgg~~e~i~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 335 IPVIATNVGGTPEIVDNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred CCEEeCCCCCcHHHhcCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 9999999988 88999988897764 789999999999997665 5555554 5899999988875
No 36
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.95 E-value=1.9e-27 Score=220.49 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=156.7
Q ss_pred CCCeeeeCchhhhhc-----c-CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY-----A-NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~-----~-~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
.||.||+.|+.+.+. . .+++.+| +|+|.+.|.+..... ... ...|+|+|++.+.||++.+++++.+
T Consensus 189 ~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~---~~~----~~~il~vgr~~~~K~~~~li~A~~~ 261 (419)
T cd03806 189 FADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDE---KTR----ENQILSIAQFRPEKNHPLQLRAFAK 261 (419)
T ss_pred cCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccccc---ccC----CcEEEEEEeecCCCCHHHHHHHHHH
Confidence 489999999988652 2 2378899 999987765432210 111 2379999999999999999999999
Q ss_pred HHHhcC-----CeEEEEEeCCcC------HHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHH
Q 023072 74 HQKELA-----GLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 74 l~~~~~-----~~~l~i~G~g~~------~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~ 138 (287)
+.+..| +++|+|+|++.. .+.++++++++++ ++.|+|..++.+ .+|+.||++|+||..|+||+++
T Consensus 262 l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~ 341 (419)
T cd03806 262 LLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGV 341 (419)
T ss_pred HHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHH
Confidence 988765 499999998742 3567788888877 466678888777 9999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCC--ccccc---cCCCeEeecCHHHHHHHHHHHHhCCCC---CccH---HHHhcCCHHHHH
Q 023072 139 AEALAMGKIVVCANHPS--NDFFK---QFPNCRTYDDRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESAT 203 (287)
Q Consensus 139 ~EAma~G~PVV~s~~~~--~e~i~---~~~~g~l~~d~~~l~~~i~~ll~~~~~---~~~~---~~~~~~sw~~~~ 203 (287)
+||||||+|||+++.+| .+++. ++.+|++++|+++++++|.+++++++. .+.. ...++|||+...
T Consensus 342 lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~~~~~~~~~~~~~~~~~~~fs~~~f~ 417 (419)
T cd03806 342 VEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSLSEEERLRIRRAARSSVKRFSDEEFE 417 (419)
T ss_pred HHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCHHHhc
Confidence 99999999999999876 46776 788999999999999999999998654 1222 222579998764
No 37
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.95 E-value=3.6e-27 Score=221.96 Aligned_cols=208 Identities=19% Similarity=0.262 Sum_probs=163.1
Q ss_pred CCeeeeCchhhhh-c---------------cCCcEEee-ccCCCCccccCcchHHH------------------hh-cCC
Q 023072 2 GFQVIRLSAATQE-Y---------------ANSIICNV-HGVNPKFLEIGKKKKEQ------------------QQ-NGT 45 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~---------------~~~~i~vi-~gvd~~~~~~~~~~~~~------------------~~-~~~ 45 (287)
||+|+++|+...+ + ...++.+| ||+|.+.|.+....... .. .+.
T Consensus 211 ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~l~~~~g~ 290 (476)
T cd03791 211 ADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAALQEELGL 290 (476)
T ss_pred cCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHHHHHHcCC
Confidence 7899999987643 1 24689999 99999988765432110 01 110
Q ss_pred --CCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHh
Q 023072 46 --HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIF 119 (287)
Q Consensus 46 --~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~ 119 (287)
......|+|+||+.++||++.+++++..+.+. +++|+|+|+|+. .+.+++++.++..++.++++.++.. .+|
T Consensus 291 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 368 (476)
T cd03791 291 PVDPDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY 368 (476)
T ss_pred CcCCCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Confidence 01234799999999999999999999998765 499999999864 3567777777655777776666544 799
Q ss_pred hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCC------CeEeec--CHHHHHHHHHHHHhCCCC---
Q 023072 120 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFP------NCRTYD--DRNGFVEATLKALAEEPA--- 187 (287)
Q Consensus 120 ~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~------~g~l~~--d~~~l~~~i~~ll~~~~~--- 187 (287)
+.||++++||.+|+||++++|||+||+|||+++.|| .+.+.++. +|++++ |+++++++|.++++....
T Consensus 369 ~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~~~~~ 448 (476)
T cd03791 369 AGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYRDPEA 448 (476)
T ss_pred HhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHcCHHH
Confidence 999999999999999999999999999999999988 88898877 899886 899999999998864322
Q ss_pred --CccHHHH-hcCCHHHHHHHHHHHHh
Q 023072 188 --LPTEAQR-HQLSWESATERFLQVAE 211 (287)
Q Consensus 188 --~~~~~~~-~~~sw~~~~~~~~~~~~ 211 (287)
+++++.. ..|+|+.++++++++|+
T Consensus 449 ~~~~~~~~~~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 449 WRKLQRNAMAQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHh
Confidence 3333333 47999999999999996
No 38
>PLN00142 sucrose synthase
Probab=99.95 E-value=2e-27 Score=229.94 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=148.4
Q ss_pred CCcEEee-ccCCCCccccCcchHHH-------------------hhcCC--CCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 17 NSIICNV-HGVNPKFLEIGKKKKEQ-------------------QQNGT--HAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 17 ~~~i~vi-~gvd~~~~~~~~~~~~~-------------------~~~~~--~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
..++.+| +|+|...|.|....... ...+. ....+.|+++||+.+.||++.|++++.++
T Consensus 519 ~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l 598 (815)
T PLN00142 519 DPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKN 598 (815)
T ss_pred ccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHH
Confidence 4588999 99999987754322110 00110 11123699999999999999999999998
Q ss_pred HHhcCCeEEEEEeCCc------CH------HHHHHHHHhcCCceE--EecCCCC----HH--HHhh-hCCEEEcCCCCCc
Q 023072 75 QKELAGLEVDLYGNGE------DF------NQIQEAAEKLKIVVR--VYPGRDH----AD--LIFH-DYKVFLNPSTTDV 133 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~------~~------~~l~~~~~~~~l~~~--v~g~~~~----~~--~~~~-~adv~v~ps~~E~ 133 (287)
.+..++++|+|+|++. +. .++.++++++++..+ +.|...+ .+ .+++ .+|+||+||.+|+
T Consensus 599 ~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~Eg 678 (815)
T PLN00142 599 KRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEA 678 (815)
T ss_pred HHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccC
Confidence 7777789999999872 11 346678888887544 4465432 22 3344 4799999999999
Q ss_pred chHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHH----hCCCC--CccHHHH----hcCCHH
Q 023072 134 VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKAL----AEEPA--LPTEAQR----HQLSWE 200 (287)
Q Consensus 134 ~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll----~~~~~--~~~~~~~----~~~sw~ 200 (287)
||++++||||||+|||+|+.|| .+++.++.+|++++ |+++++++|.+++ +|+.. +++.+++ ++|||+
T Consensus 679 FGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe 758 (815)
T PLN00142 679 FGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWK 758 (815)
T ss_pred CCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999998 89999999999986 9999999998765 45443 4555443 589999
Q ss_pred HHHHHHHHHHhc
Q 023072 201 SATERFLQVAEL 212 (287)
Q Consensus 201 ~~~~~~~~~~~~ 212 (287)
.++++++++...
T Consensus 759 ~~A~rll~L~~~ 770 (815)
T PLN00142 759 IYAERLLTLGGV 770 (815)
T ss_pred HHHHHHHHHHhh
Confidence 999999987753
No 39
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.95 E-value=4e-27 Score=214.53 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=161.8
Q ss_pred CCeeeeCchhhhh-----cc-CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YA-NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~-~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
+|.||+.|+.... ++ ..++.+| +|++...+.+... ...... .++|+|++.++||++.+++++..+
T Consensus 158 ~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~----~~~~~~----~i~~vgrl~~~K~~~~li~a~~~l 229 (372)
T cd04949 158 VDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQF----KQRKPH----KIITVARLAPEKQLDQLIKAFAKV 229 (372)
T ss_pred CCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccch----hhcCCC----eEEEEEccCcccCHHHHHHHHHHH
Confidence 6789999998754 23 2348888 9999887755321 111222 799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+..|+++|+|+|.|++...+...++++++. +.+.|..++...+|+.||++|+||..|+||++++|||+||+|||+++
T Consensus 230 ~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~ 309 (372)
T cd04949 230 VKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYD 309 (372)
T ss_pred HHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEec
Confidence 9999999999999999878888888877764 44457555656999999999999999999999999999999999999
Q ss_pred CC-C-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHH
Q 023072 153 HP-S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERF 206 (287)
Q Consensus 153 ~~-~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~ 206 (287)
.+ + .+++.++.+|++++ |+++++++|..+++++.. .++...+ ++|+|+.++++|
T Consensus 310 ~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 310 VNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred CCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 86 5 88899989999987 999999999999998754 4444333 689999988764
No 40
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=1.4e-26 Score=208.03 Aligned_cols=205 Identities=18% Similarity=0.195 Sum_probs=165.9
Q ss_pred CCeeeeCchhhhhc----cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY----ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 76 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~----~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~ 76 (287)
||.|++.|+.+... ...++.++ +|+|.+.+.+..................++|+|++.+.||++.+++++.++.+
T Consensus 145 ~d~i~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~ 224 (364)
T cd03814 145 ADRVLVPSPSLADELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLGPPDRPVLLYVGRLAPEKNLEALLDADLPLRR 224 (364)
T ss_pred CCEEEeCCHHHHHHHhccCCCceeecCCCccccccCcccccHHHHHHhCCCCCeEEEEEeccccccCHHHHHHHHHHhhh
Confidence 78999999998762 34578888 99999988765443222111111123379999999999999999999999987
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
. ++++|+|+|.+++.+.++ ....++.++|..++.+ ++|+.||++++||..|++|++++||||||+|||+++.+
T Consensus 225 ~-~~~~l~i~G~~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~ 299 (364)
T cd03814 225 R-PPVRLVIVGDGPARARLE----ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG 299 (364)
T ss_pred c-CCceEEEEeCCchHHHHh----ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC
Confidence 7 899999999988766554 3344777888877666 99999999999999999999999999999999999998
Q ss_pred C-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHh
Q 023072 155 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 211 (287)
Q Consensus 155 ~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 211 (287)
+ .+++.++.+|++++ |.++++++|.+++++++. .++.+.+ ++|+|+.+.++++++|+
T Consensus 300 ~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 300 GPADIVTDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLLEAYR 364 (364)
T ss_pred CchhhhcCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhhC
Confidence 8 78888878898875 888999999999998766 4444444 48999999999999884
No 41
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.95 E-value=1.4e-26 Score=211.80 Aligned_cols=206 Identities=19% Similarity=0.209 Sum_probs=163.3
Q ss_pred CCeeeeCchhhhh-----c--cCCcEEee-ccCCCCccccCcchHH-HhhcCCCCCCCcEEEEEecccccCHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----Y--ANSIICNV-HGVNPKFLEIGKKKKE-QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~--~~~~i~vi-~gvd~~~~~~~~~~~~-~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
||.|++.|+.... + +..++.+| ||+|.+.+.+...... ............|+|+|++.+.||++.+++++.
T Consensus 164 ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gr~~~~k~~~~ll~a~~ 243 (398)
T cd03800 164 ADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRILAVGRLDPRKGIDTLIRAYA 243 (398)
T ss_pred CCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEEEEEcccccccCHHHHHHHHH
Confidence 7889999987643 1 23458889 9999988766543221 001111122347999999999999999999999
Q ss_pred HHHHhcCCeEEEEEeCCcC------HHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 73 DHQKELAGLEVDLYGNGED------FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 73 ~l~~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
.+.+..++++|+|+|++.. ...++.+++.+++ ++.++|..++.+ .+|+.||++++||..|++|++++|||
T Consensus 244 ~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~ 323 (398)
T cd03800 244 ELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAM 323 (398)
T ss_pred HHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHH
Confidence 9988888999999998764 2335666677665 466679888777 89999999999999999999999999
Q ss_pred hcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHH
Q 023072 143 AMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFL 207 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~ 207 (287)
+||+|||+++.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+.+ ++|||+.++++++
T Consensus 324 a~G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 324 ACGLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred hcCCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999988 88888888898886 899999999999988654 3443322 6899999999875
No 42
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.95 E-value=1.2e-26 Score=206.02 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=160.7
Q ss_pred CCeeeeCchhhhh----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 76 (287)
Q Consensus 2 ~~~Vi~lS~~~~~----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~ 76 (287)
||.|++.|+.+.. .+..++.++ ||++...+... ..... ..++|+|++.+.||++.+++++..+.+
T Consensus 136 ~d~ii~~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------~~~~~----~~i~~~g~~~~~K~~~~l~~~~~~l~~ 205 (348)
T cd03820 136 ADAVVVLTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS------SDLKS----KRILAVGRLVPQKGFDLLIEAWAKIAK 205 (348)
T ss_pred CCEEEEeCHHHHHHhhccCCCCeEEecCCcChhhcccc------CCCCC----cEEEEEEeeccccCHHHHHHHHHHHHh
Confidence 7899999999842 346789999 99998876543 01122 379999999999999999999999988
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCce--EEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVV--RVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~--~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
..++++|+|+|.+++...+++.++++++.. .+.|..++...+|+.||++++||..|++|++++|||+||+|||+++.+
T Consensus 206 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~ 285 (348)
T cd03820 206 KHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCP 285 (348)
T ss_pred cCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCC
Confidence 889999999999999888888888887743 445663444499999999999999999999999999999999999975
Q ss_pred C--ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHH---HHhcCCHHHHHHHHH
Q 023072 155 S--NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFL 207 (287)
Q Consensus 155 ~--~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~---~~~~~sw~~~~~~~~ 207 (287)
+ .+++.++.+|++++ |+++++++|.+++++++. .++.+ ..++|+|+.++++|.
T Consensus 286 ~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 286 TGPSEIIEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred CchHhhhccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 4 55666666898886 889999999999998765 34443 346899999998875
No 43
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.95 E-value=2.4e-26 Score=207.34 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=149.8
Q ss_pred CCeeeeCchhhhhc-----cCCcEEee-ccCCCCccccCcchHHH-hhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-----ANSIICNV-HGVNPKFLEIGKKKKEQ-QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-----~~~~i~vi-~gvd~~~~~~~~~~~~~-~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
++.+++.|+...+. .++++.+| ||+|.+.+.+....... ...........|+|+|++.++||++.+++++..+
T Consensus 138 ~~~~i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l 217 (358)
T cd03812 138 ATDYLACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAEL 217 (358)
T ss_pred CCEEEEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHH
Confidence 67899999887552 36789999 99998877654332211 1111122234799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+..++++++|+|+|+..+.+++.++++++. +.++|..++..++|+.||++|+||..|++|++++||||||+|||+|+
T Consensus 218 ~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~ 297 (358)
T cd03812 218 LKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSD 297 (358)
T ss_pred HHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEc
Confidence 9888999999999999888888888887764 55567755555999999999999999999999999999999999999
Q ss_pred CCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC
Q 023072 153 HPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 153 ~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~ 187 (287)
.++ .+.+.++..++..+ ++++++++|.++++++..
T Consensus 298 ~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 334 (358)
T cd03812 298 TITKEVDLTDLVKFLSLDESPEIWAEEILKLKSEDRR 334 (358)
T ss_pred CCchhhhhccCccEEeCCCCHHHHHHHHHHHHhCcch
Confidence 988 77777743334444 679999999999999887
No 44
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.95 E-value=3.3e-26 Score=206.28 Aligned_cols=208 Identities=14% Similarity=0.163 Sum_probs=164.0
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHh--hcCCCCCCCcEEEEEecccccCHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLELL 71 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~--~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~ 71 (287)
++.++.+|+...+ ++.+++.+| ||+|...+.+........ ..........++|+|++.+.||++.+++++
T Consensus 131 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~ 210 (360)
T cd04951 131 SDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAF 210 (360)
T ss_pred cCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHH
Confidence 4566777776533 356789999 999988776543321111 111111223699999999999999999999
Q ss_pred HHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 72 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
.++.+..|+++|+|+|+|++.+.+++.++++++ ++.++|..++...+|+.||++++||..|++|++++|||++|+|||
T Consensus 211 ~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI 290 (360)
T cd04951 211 AKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVV 290 (360)
T ss_pred HHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEE
Confidence 999888899999999999988888888888776 456678776656999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccH---HHHhcCCHHHHHHHHHHHHh
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~---~~~~~~sw~~~~~~~~~~~~ 211 (287)
+++.++ .+++.+ +|++++ |++++++++.+++++++. .++. ...++|+|+.+++++.++|+
T Consensus 291 ~~~~~~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 291 ATDAGGVREVVGD--SGLIVPISDPEALANKIDEILKMSGEERDIIGARRERIVKKFSINSIVQQWLTLYT 359 (360)
T ss_pred EecCCChhhEecC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence 999988 777776 666654 999999999999965444 2222 23468999999999999996
No 45
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.95 E-value=2.4e-26 Score=206.34 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=158.5
Q ss_pred CCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
++.|++.|..... .+..++.++ ||+|.+.+.+..................++|+|++.+.||++.+++++..+.
T Consensus 150 ~~~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~ 229 (375)
T cd03821 150 AAAVHATSEQEAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLA 229 (375)
T ss_pred CCEEEECCHHHHHHHHhhCCcccEEEcCCCcChhccCcchhhhhhhhccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhh
Confidence 4567777655432 356789999 9999988765432211111111222347999999999999999999999999
Q ss_pred HhcCCeEEEEEeCCcC--HHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 76 KELAGLEVDLYGNGED--FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
++.++++|+|+|.++. ...++..+.++++ ++.++|.+++.+ .+|+.||++|+||..|+||++++|||+||+|||
T Consensus 230 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI 309 (375)
T cd03821 230 ERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVV 309 (375)
T ss_pred hhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEE
Confidence 8889999999998754 3445555466665 456678888766 899999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHH
Q 023072 150 CANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 207 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~ 207 (287)
+++.++ .+++.+ ..|++++ +.++++++|.++++++.. .++.+. .++|+|+.++++++
T Consensus 310 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 310 TTDKVPWQELIEY-GCGWVVDDDVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred EcCCCCHHHHhhc-CceEEeCCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999988 777777 6787776 779999999999998644 333322 47999999999876
No 46
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.95 E-value=3e-26 Score=206.24 Aligned_cols=208 Identities=20% Similarity=0.150 Sum_probs=162.5
Q ss_pred CCCeeeeCc-hhhhhc-c---CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 1 MGFQVIRLS-AATQEY-A---NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 1 ~~~~Vi~lS-~~~~~~-~---~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
.||+|++.| +...++ . .+++.++ ||++...+....... ..........++|+|++.+.||++.+++++..+
T Consensus 134 ~~d~ii~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~ 210 (366)
T cd03822 134 RADAVIVMSSELLRALLLRAYPEKIAVIPHGVPDPPAEPPESLK---ALGGLDGRPVLLTFGLLRPYKGLELLLEALPLL 210 (366)
T ss_pred cCCEEEEeeHHHHHHHHhhcCCCcEEEeCCCCcCcccCCchhhH---hhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHH
Confidence 379999995 444443 2 3689999 999988775543221 111112234799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHH-H----HHHhcCC--ceEEecC-CCCHH--HHhhhCCEEEcCCCCC--cchHHHHHHH
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQ-E----AAEKLKI--VVRVYPG-RDHAD--LIFHDYKVFLNPSTTD--VVCTTTAEAL 142 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~-~----~~~~~~l--~~~v~g~-~~~~~--~~~~~adv~v~ps~~E--~~~~~~~EAm 142 (287)
.++.++++|+|+|.+....... . +++++++ ++.++|+ ++..+ .+|+.||++++||..| ++|++++|||
T Consensus 211 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~ 290 (366)
T cd03822 211 VAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAI 290 (366)
T ss_pred HhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHH
Confidence 9888999999999986533222 1 2566665 5566677 77666 9999999999999999 9999999999
Q ss_pred hcCCeEEeecCCCccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHh
Q 023072 143 AMGKIVVCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 211 (287)
Q Consensus 143 a~G~PVV~s~~~~~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 211 (287)
+||+|||+++.++.+.+.+..+|++++ |+++++++|.++++++.. .++.+.+ +.|+|+.+++++.++|+
T Consensus 291 a~G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 366 (366)
T cd03822 291 GFGKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYLRLLA 366 (366)
T ss_pred HcCCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhC
Confidence 999999999998877777777898875 899999999999998655 4444333 46999999999999874
No 47
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.94 E-value=2.2e-26 Score=207.10 Aligned_cols=197 Identities=18% Similarity=0.226 Sum_probs=164.7
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.|++.|+.+.+ .+..++.++ ||+|.+.+.+..... .... ..++|+|++.+.||++.+++++..
T Consensus 131 ~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~~---~~~~----~~i~~~g~~~~~k~~~~l~~~~~~ 203 (355)
T cd03799 131 ADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPP---PGEP----LRILSVGRLVEKKGLDYLLEALAL 203 (355)
T ss_pred CCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccccc---cCCC----eEEEEEeeeccccCHHHHHHHHHH
Confidence 7899999999854 245678999 999988876543110 1122 379999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCC------CcchHHHHHHHh
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT------DVVCTTTAEALA 143 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~------E~~~~~~~EAma 143 (287)
+.+..++++|+|+|.++..+.+++.++++++ ++.++|.+++.+ .+|+.||++++||.. |++|++++|||+
T Consensus 204 l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a 283 (355)
T cd03799 204 LKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMA 283 (355)
T ss_pred HhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHH
Confidence 9887789999999999988889888888766 456678887666 999999999999999 999999999999
Q ss_pred cCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHH
Q 023072 144 MGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATER 205 (287)
Q Consensus 144 ~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~ 205 (287)
||+|||+++.++ .+++.++.+|++++ |.++++++|.++++++.. .++.+.+ ++|+|+..+++
T Consensus 284 ~G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 284 MGLPVISTDVSGIPELVEDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred cCCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 999999999988 78888887898876 899999999999998765 4444333 58999998765
No 48
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.94 E-value=4.7e-26 Score=203.74 Aligned_cols=208 Identities=19% Similarity=0.169 Sum_probs=163.8
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHh--hcCCCCCCCcEEEEEecccccCHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQ--QNGTHAFAKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~--~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
++.+++.|+.... ++.+++.++ ||+|...+.+........ ..+.......++|+|++.+.||++.+++++.
T Consensus 137 ~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~ 216 (365)
T cd03807 137 IPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAA 216 (365)
T ss_pred cCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHH
Confidence 5777888888754 455788899 999988776544322111 1111122237899999999999999999999
Q ss_pred HHHHhcCCeEEEEEeCCcCHHHHHHHHH-hcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 73 DHQKELAGLEVDLYGNGEDFNQIQEAAE-KLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 73 ~l~~~~~~~~l~i~G~g~~~~~l~~~~~-~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
.+.+..++++|+|+|.++....++.... .+++. +.++|..++...+|+.||++++||..|++|++++|||+||+|||
T Consensus 217 ~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI 296 (365)
T cd03807 217 LLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVV 296 (365)
T ss_pred HHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEE
Confidence 9988888999999999988777776666 66653 44457665555999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHH----HHhcCCHHHHHHHHHHHHh
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~----~~~~~sw~~~~~~~~~~~~ 211 (287)
+++.++ .+++.+ +|++++ |+++++++|.+++++++. .++.+ .+++|+|+.+++++.++|+
T Consensus 297 ~~~~~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 297 ATDVGDNAELVGD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYEELYR 365 (365)
T ss_pred EcCCCChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999988 677766 777765 999999999999998755 33332 3368999999999999985
No 49
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.94 E-value=2.7e-26 Score=207.33 Aligned_cols=201 Identities=12% Similarity=0.173 Sum_probs=153.9
Q ss_pred CCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
+|.||+.|+.+.+ ++... .+| ||+|...+.+..... .. ........++|+|++.+.||++.+++++.++.
T Consensus 144 ad~ii~~s~~~~~~~~~~~~~~~-~~i~ngv~~~~~~~~~~~~--~~-~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 219 (363)
T cd04955 144 ADRLIADSPGIKEYLKEKYGRDS-TYIPYGADHVVSSEEDEIL--KK-YGLEPGRYYLLVGRIVPENNIDDLIEAFSKSN 219 (363)
T ss_pred ccEEEeCCHHHHHHHHHhcCCCC-eeeCCCcChhhcchhhhhH--Hh-cCCCCCcEEEEEecccccCCHHHHHHHHHhhc
Confidence 6899999999865 33334 777 999988765411111 11 11111236899999999999999999999885
Q ss_pred HhcCCeEEEEEeCCcCHHHHHHHHH-hcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCC-CcchHHHHHHHhcCCeEE
Q 023072 76 KELAGLEVDLYGNGEDFNQIQEAAE-KLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~~~l~~~~~-~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~-E~~~~~~~EAma~G~PVV 149 (287)
. +++|+|+|+++....+.+.+. .++. +++++|.+++.+ .+|..||++++||.. |+||++++|||+||+|||
T Consensus 220 ~---~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI 296 (363)
T cd04955 220 S---GKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVL 296 (363)
T ss_pred c---CceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEE
Confidence 3 799999999866455544444 3433 666779888877 899999999999999 999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHh
Q 023072 150 CANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAE 211 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~ 211 (287)
+|+.++ .+++.+ +|+++++.+.+++++.+++++++. .++.+.+ ++|||+.++++++++|+
T Consensus 297 ~s~~~~~~e~~~~--~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 297 ASDNPFNREVLGD--KAIYFKVGDDLASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYEELYK 363 (363)
T ss_pred EecCCccceeecC--CeeEecCchHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 999988 666665 787777444499999999998755 4444333 46999999999999885
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.94 E-value=3.8e-26 Score=211.59 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=158.4
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhc-----------------C-CCCCCCcEEEEE
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQN-----------------G-THAFAKGAYYIG 56 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~-----------------~-~~~~~~~i~~vG 56 (287)
||+||+.|+.+.+ ++++++.+| ||. ...|.+.......... . .......++++|
T Consensus 161 ad~ii~vS~~~~~~l~~~~~~~~ki~vI~Ng~-~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~g 239 (415)
T cd03816 161 ADYNLCVTKAMKEDLQQFNNWKIRATVLYDRP-PEQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSST 239 (415)
T ss_pred CCEeeecCHHHHHHHHhhhccCCCeeecCCCC-HHHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEec
Confidence 8999999999865 457899999 884 4445443322111000 0 011123577889
Q ss_pred ecccccCHHHHHHHHHHHHHh------cCCeEEEEEeCCcCHHHHHHHHHhcCCc-eEEe-cCCCCHH--HHhhhCCEEE
Q 023072 57 KMVWSKGYKELLELLDDHQKE------LAGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVY-PGRDHAD--LIFHDYKVFL 126 (287)
Q Consensus 57 ~~~~~Kg~~~ll~a~~~l~~~------~~~~~l~i~G~g~~~~~l~~~~~~~~l~-~~v~-g~~~~~~--~~~~~adv~v 126 (287)
++.+.||++.+++|+..+.+. +|+++|+|+|+|+..+.+++.++++++. +.++ |.++..+ .+|+.||++|
T Consensus 240 rl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v 319 (415)
T cd03816 240 SWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGV 319 (415)
T ss_pred cccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEE
Confidence 999999999999999998752 4789999999999999999999999885 4445 4566666 9999999999
Q ss_pred cCCC---CCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhC---CCC--CccHHHH--h
Q 023072 127 NPST---TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAE---EPA--LPTEAQR--H 195 (287)
Q Consensus 127 ~ps~---~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~---~~~--~~~~~~~--~ 195 (287)
.|+. .|++|++++||||||+|||+++.++ .|++.++.+|++++|+++++++|.+++++ ++. +++.+++ .
T Consensus 320 ~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 320 SLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHGENGLVFGDSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred EccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 7533 3789999999999999999999988 88999999999999999999999999998 443 5665554 3
Q ss_pred cCCHHHHHHHHH
Q 023072 196 QLSWESATERFL 207 (287)
Q Consensus 196 ~~sw~~~~~~~~ 207 (287)
.++|+...+++.
T Consensus 400 ~~~~~~~~~~~~ 411 (415)
T cd03816 400 ELRWDENWDRVV 411 (415)
T ss_pred hcCHHHHHHHHh
Confidence 677877766554
No 51
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.94 E-value=1e-25 Score=200.83 Aligned_cols=209 Identities=22% Similarity=0.264 Sum_probs=169.3
Q ss_pred CCeeeeCchhhhhc-----cC--CcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-----AN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-----~~--~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|.+++.|+.+.+. .. +++.++ +|+++..+.+.. ...............++|+|++.+.||++.+++++..
T Consensus 145 ~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 223 (374)
T cd03801 145 ADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP-RAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAK 223 (374)
T ss_pred CCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc-hHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHH
Confidence 68899999987652 22 588999 999998876542 1111111111223479999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
+.+..++++|+|+|+++....+++.+++++. ++.++|.+++.+ .+|+.||++++|+..|++|++++|||+||+|||
T Consensus 224 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI 303 (374)
T cd03801 224 LRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVV 303 (374)
T ss_pred HhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEE
Confidence 9888889999999988887888887766655 556678887666 999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHH----HHhcCCHHHHHHHHHHHHh
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~----~~~~~sw~~~~~~~~~~~~ 211 (287)
+++.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+ ..+.|+|+.+++++.++|+
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (374)
T cd03801 304 ASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTEEVYY 374 (374)
T ss_pred EeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhC
Confidence 999977 88888788898887 689999999999998765 34443 3468999999999999874
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.94 E-value=1.4e-25 Score=200.73 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=173.0
Q ss_pred CCCeeeeCchhhhhc------cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY------ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~------~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
.+|.|++.|+.+.+. +..++.++ +|+|+..+.+...... ...........++|+|++.+.||++.+++++..
T Consensus 148 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~ 226 (377)
T cd03798 148 RADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEA-RKLGLPEDKKVILFVGRLVPRKGIDYLIEALAR 226 (377)
T ss_pred cCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHH-HhccCCCCceEEEEeccCccccCHHHHHHHHHH
Confidence 378999999998652 66789999 9999998876544321 011111122379999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
+.+..++++++|+|.+++...+++.++++++ ++.+.|.+++.+ .+|+.||++++||..|++|++++|||+||+|||
T Consensus 227 ~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI 306 (377)
T cd03798 227 LLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVV 306 (377)
T ss_pred HHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEE
Confidence 9888889999999999888888888877665 566678888877 999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC----CccHHHHhcCCHHHHHHHHHHHHh
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA----LPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~----~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
+++.++ .+++.++.+|++++ |+++++++|.++++++.. .......++|+|+...+++.++|+
T Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 307 ATDVGGIPEIITDGENGLLVPPGDPEALAEAILRLLADPWLRLGRAARRRVAERFSWENVAERLLELYR 375 (377)
T ss_pred EecCCChHHHhcCCcceeEECCCCHHHHHHHHHHHhcCcHHHHhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988 88888888888776 999999999999998763 122234478999999999999886
No 53
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.94 E-value=6.9e-26 Score=204.91 Aligned_cols=185 Identities=13% Similarity=0.100 Sum_probs=151.2
Q ss_pred CCeeeeCchhhhhc----cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY----ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 76 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~----~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~ 76 (287)
+|.||+.|+.+.+. -..+..+| +|+|.+.+.+... .. ..++|+|++.+.||++.+++++..+
T Consensus 154 ~d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~~-------~~----~~il~~G~~~~~K~~~~li~a~~~~-- 220 (351)
T cd03804 154 VDYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAEE-------KE----DYYLSVGRLVPYKRIDLAIEAFNKL-- 220 (351)
T ss_pred CCEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCCC-------CC----CEEEEEEcCccccChHHHHHHHHHC--
Confidence 78999999998652 23456777 9999887754331 11 2699999999999999999999876
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+ ++|+|+|+|++.+.+++ ....++.++|.+++.+ ++|+.||++++||. |+||++++||||||+|||+++.+
T Consensus 221 --~-~~l~ivG~g~~~~~l~~---~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi~~~~~ 293 (351)
T cd03804 221 --G-KRLVVIGDGPELDRLRA---KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVIAYGKG 293 (351)
T ss_pred --C-CcEEEEECChhHHHHHh---hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEEEeCCC
Confidence 3 78999999988777665 3444788899998877 99999999999999 99999999999999999999998
Q ss_pred C-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHH
Q 023072 155 S-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERF 206 (287)
Q Consensus 155 ~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~~~~sw~~~~~~~ 206 (287)
+ .+++.++.+|++++ |+++++++|.++++++.. ....+..++|+|++..+++
T Consensus 294 ~~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 294 GALETVIDGVTGILFEEQTVESLAAAVERFEKNEDFDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred CCcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCcccCHHHHHHHHHhcCHHHHHHHh
Confidence 7 88888888998875 899999999999998742 1111223579999998875
No 54
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.94 E-value=7e-26 Score=204.16 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=153.0
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHH-----hhcCCCCCCCcEEEEEecccccCHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQ-----QQNGTHAFAKGAYYIGKMVWSKGYKELL 68 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~-----~~~~~~~~~~~i~~vG~~~~~Kg~~~ll 68 (287)
||+|++.|+.+.+ ++.+++.+| ||+|+..|.+....... ...........++|+|++.++||++.++
T Consensus 125 ~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li 204 (355)
T cd03819 125 GDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFI 204 (355)
T ss_pred cCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHH
Confidence 7899999998754 345789999 99999887654332110 0111112233799999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEEeCCcCHH----HHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCC-CCCcchHHHHHH
Q 023072 69 ELLDDHQKELAGLEVDLYGNGEDFN----QIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPS-TTDVVCTTTAEA 141 (287)
Q Consensus 69 ~a~~~l~~~~~~~~l~i~G~g~~~~----~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps-~~E~~~~~~~EA 141 (287)
+++..+.+..++++++|+|.++..+ .+.+.+.++++ ++.++|..++...+|+.||++++|| ..|++|++++||
T Consensus 205 ~~~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA 284 (355)
T cd03819 205 EALARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEA 284 (355)
T ss_pred HHHHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHH
Confidence 9999998877899999999987533 34455666665 4666788555559999999999999 789999999999
Q ss_pred HhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccHHHH----hcCCHHH
Q 023072 142 LAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR----HQLSWES 201 (287)
Q Consensus 142 ma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~~~~----~~~sw~~ 201 (287)
||||+|||+++.++ .+++.++.+|++++ |+++++++|..++...+. +++.+++ ++|+|+.
T Consensus 285 ~a~G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 285 QAMGRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred HhcCCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999987 88888888898875 999999999766654333 3333333 5788765
No 55
>PHA01633 putative glycosyl transferase group 1
Probab=99.94 E-value=3.3e-25 Score=197.59 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=141.5
Q ss_pred CeeeeCchhhhh------ccCCcEEeeccCCCCccccCcch--HHHhhc-CCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 3 FQVIRLSAATQE------YANSIICNVHGVNPKFLEIGKKK--KEQQQN-GTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 3 ~~Vi~lS~~~~~------~~~~~i~vi~gvd~~~~~~~~~~--~~~~~~-~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+++|..|+.+.+ ++.. +.+++|+|.+.|.+.... ...... ...+....++|+||+.++||++.|++++..
T Consensus 94 ~~vIavS~~t~~~L~~~G~~~~-i~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~ 172 (335)
T PHA01633 94 VKFIPNSKFSAENLQEVGLQVD-LPVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNE 172 (335)
T ss_pred CEEEeCCHHHHHHHHHhCCCCc-eeeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHH
Confidence 578999999865 2222 443499999988775421 111111 111223478999999999999999999999
Q ss_pred HHHhcCC----eEEEEEeCCcCHHHHHHHHHhcCC--ceEEec---CCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 74 HQKELAG----LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYP---GRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 74 l~~~~~~----~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g---~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
+.+..|+ ++++++|.+ .+ +++++ ++++.| ..++.+ ++|+.||+||+||.+|+||++++|||
T Consensus 173 L~~~~p~~~~~i~l~ivG~~----~~----~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAM 244 (335)
T PHA01633 173 LNTKYPDIAKKIHFFVISHK----QF----TQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESM 244 (335)
T ss_pred HHHhCCCccccEEEEEEcHH----HH----HHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHH
Confidence 9887775 477777742 22 23333 566664 344454 99999999999999999999999999
Q ss_pred hcCCeEEeecCCC-cccccc----------------CC--CeEeec--CHHHHHHHHHHHHhCCCC-CccH---HHHhcC
Q 023072 143 AMGKIVVCANHPS-NDFFKQ----------------FP--NCRTYD--DRNGFVEATLKALAEEPA-LPTE---AQRHQL 197 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~----------------~~--~g~l~~--d~~~l~~~i~~ll~~~~~-~~~~---~~~~~~ 197 (287)
|||+|||+++.++ .|+..+ +. .|+.++ |+++++++|..++...+. ..+. ...++|
T Consensus 245 A~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 245 AMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred HcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 9999999999987 554331 12 355665 999999999999666443 2222 344799
Q ss_pred CHHHHHHHHHH
Q 023072 198 SWESATERFLQ 208 (287)
Q Consensus 198 sw~~~~~~~~~ 208 (287)
+|+++.++|++
T Consensus 325 ~~~~~~~~~~~ 335 (335)
T PHA01633 325 DIRNLYTRFLE 335 (335)
T ss_pred CHHHHHHHhhC
Confidence 99999999863
No 56
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.94 E-value=1.2e-25 Score=207.19 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=141.2
Q ss_pred CCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEec--ccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM--VWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~--~~~Kg~~~ll~a~~~ 73 (287)
++.||+.|+.+.+ +..+++.+| ||+|++.+......... ........++|+|+. .+.||++.+++++..
T Consensus 191 ~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~~~~~~~~---~~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~ 267 (405)
T PRK10125 191 GCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILAELPPV---RETQGKPKIAVVAHDLRYDGKTDQQLVREMMA 267 (405)
T ss_pred CcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCccccccccccccc---ccCCCCCEEEEEEeccccCCccHHHHHHHHHh
Confidence 4679999999765 345789999 99997532221111100 001122379999984 467999999999987
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCH-H--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHA-D--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~-~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
+ .++++|+|+|.|+... ..++.++|...+. + ++|+.||+||+||.+|+||++++||||||+|||+
T Consensus 268 l---~~~~~L~ivG~g~~~~---------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa 335 (405)
T PRK10125 268 L---GDKIELHTFGKFSPFT---------AGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA 335 (405)
T ss_pred C---CCCeEEEEEcCCCccc---------ccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE
Confidence 6 3579999999875421 1245566765443 3 8999999999999999999999999999999999
Q ss_pred ecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC-----CccHHHHhcCCHHHHHHHHHHHHh
Q 023072 151 ANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-----LPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 151 s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~-----~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
|+.|| .|++.+ .+|++++ |+++|++.+...+.+... .......++|+|+.++++++++|+
T Consensus 336 t~~gG~~Eiv~~-~~G~lv~~~d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~lY~ 403 (405)
T PRK10125 336 THSDAAREVLQK-SGGKTVSEEEVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQ 403 (405)
T ss_pred eCCCChHHhEeC-CcEEEECCCCHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999 777766 4899987 999999865433332111 111223468999999999999997
No 57
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.94 E-value=2.2e-25 Score=200.75 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=156.3
Q ss_pred CCeeeeCchhhhhc------cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY------ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~------~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||.||+.|+.+.+. .++++.+| +|+|.+.+.+...... ...........++|+|++.+.||++.+++++.++
T Consensus 138 ~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l 216 (357)
T cd03795 138 ADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEE-AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAAL 216 (357)
T ss_pred cCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhh-HhhcCCCCCcEEEEecccccccCHHHHHHHHHhc
Confidence 78999999987551 13678888 9999988765443211 0011112234799999999999999999999988
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeE
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PV 148 (287)
. +++|+|+|+|+....+++.+++++. ++.++|.+++.+ .+|+.||++++||. .|++|++++|||+||+||
T Consensus 217 ~----~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pv 292 (357)
T cd03795 217 P----DAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPV 292 (357)
T ss_pred c----CcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCE
Confidence 5 7999999999988888888877665 566679988776 99999999999996 499999999999999999
Q ss_pred EeecCCC-cccccc-CCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHH
Q 023072 149 VCANHPS-NDFFKQ-FPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESA 202 (287)
Q Consensus 149 V~s~~~~-~e~i~~-~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~ 202 (287)
|+++.++ .+.+.+ +.+|++++ |+++++++|.++++++.. .++.+++ ++|||+.+
T Consensus 293 i~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 356 (357)
T cd03795 293 ISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRM 356 (357)
T ss_pred EecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhh
Confidence 9999987 677765 78898875 899999999999998765 4444333 57899875
No 58
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.93 E-value=3.1e-25 Score=198.69 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=161.3
Q ss_pred CeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 3 FQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 3 ~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
|.|++.|+.+.+ .+++++.++ ||+|...+.+... ..... ...++|+|++.+.||++.+++++..+.
T Consensus 145 d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~---~~~~~----~~~i~~~G~~~~~k~~~~li~~~~~l~ 217 (359)
T cd03823 145 DAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR---APPGG----RLRFGFIGQLTPHKGVDLLLEAFKRLP 217 (359)
T ss_pred CEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhcccccc---CCCCC----ceEEEEEecCccccCHHHHHHHHHHHH
Confidence 678999988755 234688999 9999988755432 01112 237999999999999999999999987
Q ss_pred HhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCC-CCcchHHHHHHHhcCCeEEeec
Q 023072 76 KELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~-~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+ ++++|+++|.+++........ ....++.++|.+++.+ ++|+.||++++||. .|++|++++|||+||+|||+++
T Consensus 218 ~--~~~~l~i~G~~~~~~~~~~~~-~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~ 294 (359)
T cd03823 218 R--GDIELVIVGNGLELEEESYEL-EGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASD 294 (359)
T ss_pred h--cCcEEEEEcCchhhhHHHHhh-cCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECC
Confidence 6 789999999988755444333 3344677789987666 99999999999998 6999999999999999999999
Q ss_pred CCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHHHh
Q 023072 153 HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 153 ~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
.++ .+++.++.+|++++ |.+++++++.++++++.. .++.+.++.++++.++++++++|+
T Consensus 295 ~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (359)
T cd03823 295 IGGMAELVRDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSIEDQAEEYLKLYR 358 (359)
T ss_pred CCCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhHHHHHHHHHHHhh
Confidence 988 88888888898876 799999999999997665 556666677777999999999885
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.93 E-value=1e-24 Score=196.90 Aligned_cols=205 Identities=20% Similarity=0.221 Sum_probs=156.6
Q ss_pred CeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEeccc--ccCHHHHHHHHH
Q 023072 3 FQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW--SKGYKELLELLD 72 (287)
Q Consensus 3 ~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~--~Kg~~~ll~a~~ 72 (287)
+.+|..|+.+.+ ++..++.++ ||+|++.+.+..........+.......+++.|+... .||++.+++++.
T Consensus 137 ~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~a~~ 216 (365)
T cd03825 137 LTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIEALK 216 (365)
T ss_pred cEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHHHHH
Confidence 467888887654 345789999 9999998865544322222211111234556666544 899999999999
Q ss_pred HHHHh-cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCH-H--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 73 DHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHA-D--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 73 ~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~-~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
.+.++ .++++++++|+++..... ....++.++|.+++. + .+|+.||++++||..|++|++++|||+||+||
T Consensus 217 ~l~~~~~~~~~~~i~G~~~~~~~~-----~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~Pv 291 (365)
T cd03825 217 RLAERWKDDIELVVFGASDPEIPP-----DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPV 291 (365)
T ss_pred HhhhccCCCeEEEEeCCCchhhhc-----cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCE
Confidence 98765 579999999998753221 334466677888843 3 89999999999999999999999999999999
Q ss_pred EeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHHHHHhc
Q 023072 149 VCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFLQVAEL 212 (287)
Q Consensus 149 V~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~~~~~~ 212 (287)
|+++.++ .+++.++.+|++++ |++++++++.++++++.. +++.+. .++|||+.+++++.++|+.
T Consensus 292 I~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 292 VAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred EEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999988 88888877898876 899999999999988754 344432 2589999999999999973
No 60
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.93 E-value=6.5e-25 Score=195.64 Aligned_cols=199 Identities=19% Similarity=0.209 Sum_probs=157.5
Q ss_pred CCeeeeCchhhhhc------c--CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY------A--NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~------~--~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
||.|++.|+.+... . ..++.++ +|++++.+.+.... ...+.. .++|+|++.+.||++.+++++.
T Consensus 139 ~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~i~~~G~~~~~k~~~~li~~~~ 211 (359)
T cd03808 139 TDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---IPEDDP----VFLFVARLLKDKGIDELLEAAR 211 (359)
T ss_pred ccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc---cCCCCc----EEEEEeccccccCHHHHHHHHH
Confidence 68999999987652 1 2455556 88998877554331 011223 7999999999999999999999
Q ss_pred HHHHhcCCeEEEEEeCCcCHHHHHHH-HHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 73 DHQKELAGLEVDLYGNGEDFNQIQEA-AEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 73 ~l~~~~~~~~l~i~G~g~~~~~l~~~-~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
.+.+..++++|+|+|.+......... +.+.+. +++++|...+..++|+.||++++||..|++|++++|||+||+|||
T Consensus 212 ~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi 291 (359)
T cd03808 212 ILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVI 291 (359)
T ss_pred HHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEE
Confidence 99887889999999998875544432 444444 556667765555999999999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH----HhcCCHHHHHHHHH
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ----RHQLSWESATERFL 207 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~----~~~~sw~~~~~~~~ 207 (287)
+++.++ .+++.++.+|++++ |+++++++|.+++.+++. .++.+. .++|+|+.+.+++.
T Consensus 292 ~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 292 ATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred EecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 999988 88888788898876 899999999999988665 344433 46899999998875
No 61
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.93 E-value=1.4e-24 Score=195.13 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=161.4
Q ss_pred CCeeeeCchhhhhc-----cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-----ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-----~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
||.|++.|+.++.. ...++.++ +|+|+..+.+..................++|+|++.+.||++.+++++..+.
T Consensus 149 ~d~i~~~s~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~ 228 (374)
T cd03817 149 CDAVIAPSEKIADLLREYGVKRPIEVIPTGIDLDRFEPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARLL 228 (374)
T ss_pred CCEEEeccHHHHHHHHhcCCCCceEEcCCccchhccCccchhHHHHhcCCCCCCeEEEEEeeeecccCHHHHHHHHHHHH
Confidence 78999999886552 24567888 9999988766543221111111122347999999999999999999999998
Q ss_pred HhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 76 KELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
++.++++|+++|.++..+.+++.++++++ ++.++|.+++.+ .+|+.||++++||..|++|++++|||+||+|||++
T Consensus 229 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~ 308 (374)
T cd03817 229 KEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAV 308 (374)
T ss_pred HhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEe
Confidence 87789999999999988888888877766 556678888776 99999999999999999999999999999999999
Q ss_pred cCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHh
Q 023072 152 NHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAE 211 (287)
Q Consensus 152 ~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~ 211 (287)
+.++ .+++.++.+|++++ +..++++++.++++++.. .++.+.+ +++. ..+++.++|+
T Consensus 309 ~~~~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 372 (374)
T cd03817 309 DAPGLPDLVADGENGFLFPPGDEALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKVEKLYE 372 (374)
T ss_pred CCCChhhheecCceeEEeCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 9988 88888888998887 333999999999998765 4444333 2333 3455555554
No 62
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.93 E-value=6.1e-25 Score=198.02 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=162.8
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||.|++.|+.+.. ++..++.++ +|+++..+.+..................++|+|++.++||++.+++++..+
T Consensus 166 ~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l 245 (394)
T cd03794 166 ADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLRKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALL 245 (394)
T ss_pred CCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhhhccCCCCcEEEEEecCcccccCHHHHHHHHHHH
Confidence 7899999999865 245788899 999988776554321111111112233799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEEecCCCCHH--HHhhhCCEEEcCCCCCcc-----hHHHHHHHhcCC
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVV-----CTTTAEALAMGK 146 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~-----~~~~~EAma~G~ 146 (287)
.+. ++++|+|+|+|++.+.+.+.+...+. ++.++|..++.+ ++|+.||++++|+..|++ |++++|||+||+
T Consensus 246 ~~~-~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~ 324 (394)
T cd03794 246 KDR-PDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGK 324 (394)
T ss_pred hhc-CCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCC
Confidence 877 89999999999988888876665554 567788887776 999999999999998865 888999999999
Q ss_pred eEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHH
Q 023072 147 IVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERF 206 (287)
Q Consensus 147 PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~ 206 (287)
|||+++.++ .+.+.++.+|++++ |+++++++|.++++++.. .++++.+ ++|+|+.+++++
T Consensus 325 pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 325 PVLASVDGESAELVEEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred cEEEecCCCchhhhccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 999999988 77877777888876 899999999999987665 3444333 489999999876
No 63
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.93 E-value=2.6e-25 Score=200.10 Aligned_cols=204 Identities=19% Similarity=0.228 Sum_probs=157.9
Q ss_pred CCeeeeCchhhhh-----c--cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----Y--ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~--~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.|+++|+.+.+ + +.+++.++ +|+++..+....... ............++|+|++.+.||++.+++++..
T Consensus 141 ~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~ 219 (365)
T cd03809 141 ADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE-VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFAR 219 (365)
T ss_pred cCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH-HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHH
Confidence 7899999988754 2 35789999 999999876654321 1111112223479999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 74 HQKELAGLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
+.+..++++|+|+|.+.. ........++.+. ++.++|.+++.+ .+|+.||++++||..|++|++++|||++|+||
T Consensus 220 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pv 299 (365)
T cd03809 220 LPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPV 299 (365)
T ss_pred HHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcE
Confidence 998888899999998654 2333333234444 556678888777 99999999999999999999999999999999
Q ss_pred EeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHH---HhcCCHHHHHHHHHH
Q 023072 149 VCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQ 208 (287)
Q Consensus 149 V~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~---~~~~sw~~~~~~~~~ 208 (287)
|+++.++ .+++.+ +|++++ |.++++++|.++++++.. .++.+. .++|+|++.++++++
T Consensus 300 I~~~~~~~~e~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~~ 365 (365)
T cd03809 300 IASNISSLPEVAGD--AALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTLD 365 (365)
T ss_pred EecCCCCccceecC--ceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHhC
Confidence 9999988 676654 565554 899999999999988765 444433 478999999998763
No 64
>PLN02275 transferase, transferring glycosyl groups
Probab=99.93 E-value=8e-25 Score=199.95 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=138.4
Q ss_pred CCeeeeCchhhhhcc----CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH-
Q 023072 2 GFQVIRLSAATQEYA----NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ- 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~----~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~- 75 (287)
||+||++|+.+.+.- .-++.+| || +.+.|.+...... . ..+....++++|++.+.||++.+++++..+.
T Consensus 166 ad~ii~~S~~~~~~l~~~~g~~i~vi~n~-~~~~f~~~~~~~~--~--~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~ 240 (371)
T PLN02275 166 ADGHLCVTKAMQHELDQNWGIRATVLYDQ-PPEFFRPASLEIR--L--RPNRPALVVSSTSWTPDEDFGILLEAAVMYDR 240 (371)
T ss_pred CCEEEECCHHHHHHHHHhcCCCeEEECCC-CHHHcCcCCchhc--c--cCCCcEEEEEeCceeccCCHHHHHHHHHHHHh
Confidence 799999999986531 1127778 76 4455554332210 0 0111235778999999999999999998874
Q ss_pred ----------------HhcCCeEEEEEeCCcCHHHHHHHHHhcCCc-eEEecC-CCCHH--HHhhhCCEEEcCCC---CC
Q 023072 76 ----------------KELAGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVYPG-RDHAD--LIFHDYKVFLNPST---TD 132 (287)
Q Consensus 76 ----------------~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~-~~v~g~-~~~~~--~~~~~adv~v~ps~---~E 132 (287)
+.+|+++|+|+|+|++.+++++.++++++. +.++++ .++.+ .+|+.||++|+|+. .|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e 320 (371)
T PLN02275 241 RVAARLNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGL 320 (371)
T ss_pred hhhhccccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccc
Confidence 235799999999999999999999999885 444564 66666 89999999998632 38
Q ss_pred cchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHH
Q 023072 133 VVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKAL 182 (287)
Q Consensus 133 ~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll 182 (287)
++|++++||||||+|||+++.++ .|++.++.+|++++|+++++++|.+++
T Consensus 321 ~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 321 DLPMKVVDMFGCGLPVCAVSYSCIGELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred cccHHHHHHHHCCCCEEEecCCChHHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 89999999999999999999988 889999999999999999999998874
No 65
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.92 E-value=7.8e-24 Score=188.02 Aligned_cols=182 Identities=16% Similarity=0.187 Sum_probs=146.8
Q ss_pred CCeeeeCchhhhhc-----c--CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-----A--NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-----~--~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|.|++.|+.+.+. + .+++.++ +|++.+.+.+...... ..........++|+|++.+.||++.+++++..
T Consensus 136 ~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 213 (353)
T cd03811 136 ADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL--ELGIPPDGPVILAVGRLSPQKGFDTLIRAFAL 213 (353)
T ss_pred cceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh--hcCCCCCceEEEEEecchhhcChHHHHHHHHH
Confidence 68899999987652 3 5788999 9999988765443221 00111222379999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc--eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV--VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
+....++++|+|+|.++..+.+++.+.++++. +.++|..++..++|+.||++|+||..|++|++++|||+||+|||++
T Consensus 214 l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~ 293 (353)
T cd03811 214 LRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVAT 293 (353)
T ss_pred hhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEc
Confidence 98887899999999999888888888888764 4556777666699999999999999999999999999999999999
Q ss_pred cCCC-ccccccCCCeEeec--CHHHH---HHHHHHHHhCC
Q 023072 152 NHPS-NDFFKQFPNCRTYD--DRNGF---VEATLKALAEE 185 (287)
Q Consensus 152 ~~~~-~e~i~~~~~g~l~~--d~~~l---~~~i~~ll~~~ 185 (287)
+.++ .+++.++.+|++++ |.+++ ++++..+..++
T Consensus 294 ~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 294 DCPGPREILEDGENGLLVPVGDEAALAAAALALLDLLLDP 333 (353)
T ss_pred CCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhccCCh
Confidence 9988 88899988998886 78888 45555555443
No 66
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.90 E-value=1.9e-23 Score=170.18 Aligned_cols=139 Identities=20% Similarity=0.293 Sum_probs=121.7
Q ss_pred CCcEEEEEecccccCHHHHHHHHHHHHHh-cCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCC
Q 023072 49 AKGAYYIGKMVWSKGYKELLELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYK 123 (287)
Q Consensus 49 ~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~ad 123 (287)
...|+|+|++.+.||++.+++++..+.++ .+++.++|+|++.....+...+..+++ ++.+++..++.+ .+|+.||
T Consensus 15 ~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~d 94 (172)
T PF00534_consen 15 KKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSD 94 (172)
T ss_dssp SEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTS
T ss_pred CeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEcccccccccccccccccccccccccccccccccccccccce
Confidence 34799999999999999999999999875 789999999987777788888888777 667778887454 9999999
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
++|+||..|+||++++|||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++.
T Consensus 95 i~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~ 161 (172)
T PF00534_consen 95 IFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDPEL 161 (172)
T ss_dssp EEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCHHH
Confidence 99999999999999999999999999999988 88999988999886 889999999999998643
No 67
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.88 E-value=2.1e-22 Score=188.57 Aligned_cols=189 Identities=12% Similarity=0.105 Sum_probs=138.2
Q ss_pred CcEEee-ccCCCCccccCcchHHH-----hhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEe
Q 023072 18 SIICNV-HGVNPKFLEIGKKKKEQ-----QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYG 87 (287)
Q Consensus 18 ~~i~vi-~gvd~~~~~~~~~~~~~-----~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G 87 (287)
.++.++ +|||++.|.+....... ...+.....+.|+++||+.+.||++.+++|+..+.+.+|+ ++|+++|
T Consensus 227 ~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg 306 (460)
T cd03788 227 VRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIA 306 (460)
T ss_pred EEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEc
Confidence 467888 99999988754322110 0111122334799999999999999999999999888886 5788886
Q ss_pred CC-----cCHHHH----HHHHHhcCC--------ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCe
Q 023072 88 NG-----EDFNQI----QEAAEKLKI--------VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 147 (287)
Q Consensus 88 ~g-----~~~~~l----~~~~~~~~l--------~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~P 147 (287)
.+ ++...+ ++++.+.+. .+.++ |.+++.+ .+|+.||+||+||..|+||++++||||||+|
T Consensus 307 ~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p 386 (460)
T cd03788 307 VPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDD 386 (460)
T ss_pred cCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecC
Confidence 53 233333 333333221 24444 5567666 9999999999999999999999999999999
Q ss_pred ----EEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccH---HHHhcCCHHHHHHHHHHH
Q 023072 148 ----VVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQV 209 (287)
Q Consensus 148 ----VV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~---~~~~~~sw~~~~~~~~~~ 209 (287)
||+|+.+| .+. +.+|++++ |+++++++|.+++++++. .+.. ....+|+|+..++++++.
T Consensus 387 ~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~ 458 (460)
T cd03788 387 DPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDD 458 (460)
T ss_pred CCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 99998866 444 35788876 999999999999998754 2222 223589999999988754
No 68
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.87 E-value=5.1e-21 Score=174.97 Aligned_cols=198 Identities=19% Similarity=0.117 Sum_probs=142.0
Q ss_pred CCeeeeCchhhhhcc---CCcEEee-ccCCCCccccCcchH----HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEYA---NSIICNV-HGVNPKFLEIGKKKK----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~---~~~i~vi-~gvd~~~~~~~~~~~----~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||.||+.|+.+++.- ..++.+| ||+|.+.|.+..... .....+ .+.++|+|++.++++++.+.++.
T Consensus 154 ad~vi~~S~~l~~~~~~~~~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~----~~~i~y~G~l~~~~d~~ll~~la-- 227 (373)
T cd04950 154 ADLVFTTSPSLYEAKRRLNPNVVLVPNGVDYEHFAAARDPPPPPADLAALP----RPVIGYYGAIAEWLDLELLEALA-- 227 (373)
T ss_pred CCEEEECCHHHHHHHhhCCCCEEEcccccCHHHhhcccccCCChhHHhcCC----CCEEEEEeccccccCHHHHHHHH--
Confidence 799999999987732 2678899 999999886543221 111122 23799999999988876554433
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCC-----CcchHHHHHHHhcCC
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-----DVVCTTTAEALAMGK 146 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~-----E~~~~~~~EAma~G~ 146 (287)
+..|+++|+|+|.++.......+ .. .-+++++|.+++.+ .+|+.+|++++|+.. +++|++++||||||+
T Consensus 228 --~~~p~~~~vliG~~~~~~~~~~~-~~-~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~ 303 (373)
T cd04950 228 --KARPDWSFVLIGPVDVSIDPSAL-LR-LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGK 303 (373)
T ss_pred --HHCCCCEEEEECCCcCccChhHh-cc-CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCC
Confidence 34689999999998332222221 11 23788889998888 999999999999864 358999999999999
Q ss_pred eEEeecCCCccccccCCCeEeec-CHHHHHHHHHHHHhCCCC-CccH--HHHhcCCHHHHHHHHHHHHh
Q 023072 147 IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA-LPTE--AQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 147 PVV~s~~~~~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~-~~~~--~~~~~~sw~~~~~~~~~~~~ 211 (287)
|||+|+.+.. ......+++.. |+++|+++|.+++.++.. .... ...+.+||+..++++.+...
T Consensus 304 PVVat~~~~~--~~~~~~~~~~~~d~~~~~~ai~~~l~~~~~~~~~~~~~~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 304 PVVATPLPEV--RRYEDEVVLIADDPEEFVAAIEKALLEDGPARERRRLRLAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred CEEecCcHHH--HhhcCcEEEeCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999987652 22222344444 899999999998776544 2212 24578999999999986544
No 69
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.87 E-value=2.4e-21 Score=180.54 Aligned_cols=190 Identities=15% Similarity=0.144 Sum_probs=138.5
Q ss_pred CcEEee-ccCCCCccccCcchHH-----HhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEe
Q 023072 18 SIICNV-HGVNPKFLEIGKKKKE-----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYG 87 (287)
Q Consensus 18 ~~i~vi-~gvd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G 87 (287)
.++.++ +|||++.|.+...... ..........+.|+++||+++.||++.+++|++.+.+.+|+ +.|+++|
T Consensus 222 ~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~ 301 (456)
T TIGR02400 222 VRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIA 301 (456)
T ss_pred EEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEe
Confidence 457788 9999998865432110 00111112234789999999999999999999999888886 4577774
Q ss_pred -----CCcCHHHHHHHHHhc--------CC----ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCe
Q 023072 88 -----NGEDFNQIQEAAEKL--------KI----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 147 (287)
Q Consensus 88 -----~g~~~~~l~~~~~~~--------~l----~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~P 147 (287)
++++...+++.++++ +. .+.++ +.++..+ .+|+.||++|+||..||||++++||||||+|
T Consensus 302 ~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P 381 (456)
T TIGR02400 302 VPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDP 381 (456)
T ss_pred cCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCC
Confidence 344555565555443 11 23444 4566666 9999999999999999999999999999999
Q ss_pred ----EEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccH---HHHhcCCHHHHHHHHHHHH
Q 023072 148 ----VVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQVA 210 (287)
Q Consensus 148 ----VV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~---~~~~~~sw~~~~~~~~~~~ 210 (287)
||+|+.+| .+.+. +|++++ |+++++++|.++++++.. .+.. +...++++...++++++..
T Consensus 382 ~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 382 KDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTMPLEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred CCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 99999876 56553 688876 999999999999997654 1111 2225789999998887643
No 70
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.85 E-value=5.1e-20 Score=171.86 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=76.9
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCc-----cccccC-CCe-Eee-------c-CHHHHHHHHHHH
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----DFFKQF-PNC-RTY-------D-DRNGFVEATLKA 181 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~-----e~i~~~-~~g-~l~-------~-d~~~l~~~i~~l 181 (287)
++|+.||++|+||++|+||++++||||||+|||+|+.+|. +.+.++ ..| ++. + +.++++++|.++
T Consensus 470 E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~ 549 (590)
T cd03793 470 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEF 549 (590)
T ss_pred HHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999772 444443 235 444 2 678889999998
Q ss_pred HhCCCC-Ccc---H--HHHhcCCHHHHHHHHHHHHhccc
Q 023072 182 LAEEPA-LPT---E--AQRHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 182 l~~~~~-~~~---~--~~~~~~sw~~~~~~~~~~~~~~~ 214 (287)
++.+.. .+. . ...+.|+|++....|.++|+++.
T Consensus 550 ~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A~~~Al 588 (590)
T cd03793 550 CQLSRRQRIIQRNRTERLSDLLDWRNLGRYYRKARQLAL 588 (590)
T ss_pred hCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 855322 111 1 23368999999999999999765
No 71
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.82 E-value=1.1e-19 Score=179.31 Aligned_cols=195 Identities=13% Similarity=0.056 Sum_probs=141.7
Q ss_pred CcEEee-ccCCCCccccCcchH-----HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeE--EEEE---
Q 023072 18 SIICNV-HGVNPKFLEIGKKKK-----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE--VDLY--- 86 (287)
Q Consensus 18 ~~i~vi-~gvd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~--l~i~--- 86 (287)
.++.++ +|||++.|.+..... ...........+.|+++||+++.||+..+++|++.+.+.+|+++ ++++
T Consensus 242 ~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia 321 (797)
T PLN03063 242 TRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIA 321 (797)
T ss_pred EEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEe
Confidence 457788 999999886532211 00111112223479999999999999999999999998888764 3333
Q ss_pred ----eCCcCHHHHHHHHHhcC--Cc----------eEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCe
Q 023072 87 ----GNGEDFNQIQEAAEKLK--IV----------VRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 147 (287)
Q Consensus 87 ----G~g~~~~~l~~~~~~~~--l~----------~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~P 147 (287)
|++++.+.+++.+.++. ++ ++++ +.++..+ .+|+.||+||+||..||++++++||||||+|
T Consensus 322 ~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p 401 (797)
T PLN03063 322 VPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKA 401 (797)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecC
Confidence 23445566666666553 22 2222 3456666 9999999999999999999999999999999
Q ss_pred ----EEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC-Cc--c---HHHHhcCCHHHHHHHHHHHHhccc
Q 023072 148 ----VVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-LP--T---EAQRHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 148 ----VV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~-~~--~---~~~~~~~sw~~~~~~~~~~~~~~~ 214 (287)
+|+|+.+| .+.+ +.+|++++ |+++++++|.++++.++. +. . .+...+++|...++.+++.++...
T Consensus 402 ~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 402 KKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNMSDEERETRHRHNFQYVKTHSAQKWADDFMSELNDII 479 (797)
T ss_pred CCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHh
Confidence 99999977 5554 34688886 999999999999996554 11 1 123368999999999988887543
No 72
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.80 E-value=6.4e-19 Score=163.78 Aligned_cols=207 Identities=15% Similarity=0.076 Sum_probs=136.3
Q ss_pred CCeeeeCchhhhh------ccCCcEEeeccCCCCccccCcc-hHHHhhcCCC-CCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNVHGVNPKFLEIGKK-KKEQQQNGTH-AFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi~gvd~~~~~~~~~-~~~~~~~~~~-~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|.|++.|+...+ ++++ +.++++.+.+.+.+... .......... .....++++|+ ..|+.+.+++++.+
T Consensus 179 ~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~~~d~~~~~~~~~~~~~~r~~~~~~~~vil~~~~--~~~~~~~ll~A~~~ 255 (425)
T PRK05749 179 IDLVLAQSEEDAERFLALGAKNE-VTVTGNLKFDIEVPPELAARAATLRRQLAPNRPVWIAAST--HEGEEELVLDAHRA 255 (425)
T ss_pred CCEEEECCHHHHHHHHHcCCCCC-cEecccccccCCCChhhHHHHHHHHHHhcCCCcEEEEeCC--CchHHHHHHHHHHH
Confidence 7899999999865 3344 77774443333222111 1000000000 12235777775 36889999999999
Q ss_pred HHHhcCCeEEEEEeCCcCH-HHHHHHHHhcCCceEE-ecC--------------CCCHHHHhhhCCEE-EcCCCCCcchH
Q 023072 74 HQKELAGLEVDLYGNGEDF-NQIQEAAEKLKIVVRV-YPG--------------RDHADLIFHDYKVF-LNPSTTDVVCT 136 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~-~~l~~~~~~~~l~~~v-~g~--------------~~~~~~~~~~adv~-v~ps~~E~~~~ 136 (287)
+.+.+|+++|+|+|+|++. +++++.++++++.... .++ ..+...+|+.||++ +.+|..|++|.
T Consensus 256 l~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~ 335 (425)
T PRK05749 256 LLKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVGGSLVKRGGH 335 (425)
T ss_pred HHHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEECCCcCCCCCC
Confidence 9888899999999999875 7899999888875322 221 11122999999995 55788899999
Q ss_pred HHHHHHhcCCeEEeecC-CC-ccccccC-CCeEe--ecCHHHHHHHHHHHHhCCCC--CccHHHHhcC-CHHHHHHHHHH
Q 023072 137 TTAEALAMGKIVVCANH-PS-NDFFKQF-PNCRT--YDDRNGFVEATLKALAEEPA--LPTEAQRHQL-SWESATERFLQ 208 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~-~~-~e~i~~~-~~g~l--~~d~~~l~~~i~~ll~~~~~--~~~~~~~~~~-sw~~~~~~~~~ 208 (287)
+++||||||+|||+++. ++ .+.+... .+|++ +.|+++++++|..+++|++. +++.++++.. +....++++.+
T Consensus 336 ~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~ 415 (425)
T PRK05749 336 NPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQ 415 (425)
T ss_pred CHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 99999999999999876 33 3433321 24544 35999999999999998665 5555544321 11355566665
Q ss_pred HHh
Q 023072 209 VAE 211 (287)
Q Consensus 209 ~~~ 211 (287)
.+.
T Consensus 416 ~l~ 418 (425)
T PRK05749 416 LLE 418 (425)
T ss_pred HHH
Confidence 554
No 73
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.78 E-value=7.7e-19 Score=172.97 Aligned_cols=193 Identities=11% Similarity=0.114 Sum_probs=138.2
Q ss_pred cEEee-ccCCCCccccCcchHH---H--hhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeC
Q 023072 19 IICNV-HGVNPKFLEIGKKKKE---Q--QQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN 88 (287)
Q Consensus 19 ~i~vi-~gvd~~~~~~~~~~~~---~--~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~ 88 (287)
++.++ +|||++.|.+...... . .-.......+.|+++||+.+.||+..+++|+..+.+.+|+ ++|+++|.
T Consensus 229 ~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~ 308 (726)
T PRK14501 229 RVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAV 308 (726)
T ss_pred EEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEec
Confidence 47788 9999999875432110 0 0011122234799999999999999999999999888886 67888873
Q ss_pred C-----cCHHHHHHHHHhc----C-------C-ceEE-ecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC--
Q 023072 89 G-----EDFNQIQEAAEKL----K-------I-VVRV-YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-- 146 (287)
Q Consensus 89 g-----~~~~~l~~~~~~~----~-------l-~~~v-~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~-- 146 (287)
+ ++...+++.+.++ + . .+.+ .+.+++.+ .+|+.||+|++||..||+|++++||||||+
T Consensus 309 ~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~ 388 (726)
T PRK14501 309 PSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDG 388 (726)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCC
Confidence 2 3334444444332 1 1 2333 36677777 999999999999999999999999999955
Q ss_pred ---eEEeecCCCccccccCCCeEeec--CHHHHHHHHHHHHhCCCC----Ccc--HHHHhcCCHHHHHHHHHHHHhccc
Q 023072 147 ---IVVCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA----LPT--EAQRHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 147 ---PVV~s~~~~~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~----~~~--~~~~~~~sw~~~~~~~~~~~~~~~ 214 (287)
||++...|+...+. +|++++ |+++++++|.++++++.. ++. .+...+|+|+..++++++.|....
T Consensus 389 ~g~~vls~~~G~~~~l~---~~llv~P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~ 464 (726)
T PRK14501 389 DGVLILSEMAGAAAELA---EALLVNPNDIEGIAAAIKRALEMPEEEQRERMQAMQERLRRYDVHKWASDFLDELREAA 464 (726)
T ss_pred CceEEEecccchhHHhC---cCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66666657644443 377776 999999999999997643 111 122358999999999999888553
No 74
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.77 E-value=1e-17 Score=153.74 Aligned_cols=202 Identities=12% Similarity=0.035 Sum_probs=140.5
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHh-hcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQ-QNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~-~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
||++++.|+.+.. ++++++.++ ++++++++.+........ ..+..+..+.|+++|+....|++..+++++..
T Consensus 151 ~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~ 230 (382)
T PLN02605 151 VTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGD 230 (382)
T ss_pred CCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHH
Confidence 7899999998754 577899999 999988765433222211 11111223479999999889999999999876
Q ss_pred HHH----hcCCeE-EEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCe
Q 023072 74 HQK----ELAGLE-VDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKI 147 (287)
Q Consensus 74 l~~----~~~~~~-l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~P 147 (287)
+.. ..++.+ ++++|.+.. .+.+++. ..+.+++++|..++..++|+.||++|.++ .|++++||||||+|
T Consensus 231 ~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~--~~~~~v~~~G~~~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~P 304 (382)
T PLN02605 231 SLYDKNLGKPIGQVVVICGRNKKLQSKLESR--DWKIPVKVRGFVTNMEEWMGACDCIITKA----GPGTIAEALIRGLP 304 (382)
T ss_pred hhccccccCCCceEEEEECCCHHHHHHHHhh--cccCCeEEEeccccHHHHHHhCCEEEECC----CcchHHHHHHcCCC
Confidence 531 135565 566687643 3444443 12346778899987779999999999855 48899999999999
Q ss_pred EEeecC------CCccccccCCCeEeecCHHHHHHHHHHHHhC-CCC--CccHHHHh---cCCHHHHHHHHHHH
Q 023072 148 VVCANH------PSNDFFKQFPNCRTYDDRNGFVEATLKALAE-EPA--LPTEAQRH---QLSWESATERFLQV 209 (287)
Q Consensus 148 VV~s~~------~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~-~~~--~~~~~~~~---~~sw~~~~~~~~~~ 209 (287)
||+++. ++.+++.+...|+...|+++++++|.+++++ ++. .++.+.++ ..+++.+++.+.+.
T Consensus 305 vI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 305 IILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHEL 378 (382)
T ss_pred EEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 999985 2344555555677778999999999999987 433 44444442 34556666555443
No 75
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.77 E-value=1.3e-18 Score=135.87 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=92.9
Q ss_pred cEEEEEecccccCHHHHHH-HHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLE-LLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~-a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.++|+|++.+.|+++.+++ ++.++.++.|+++|+|+|.+++ ++++. . ..+++++|.+++..++++.||++++|+
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~--~-~~~v~~~g~~~e~~~~l~~~dv~l~p~ 78 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL--R-RPNVRFHGFVEELPEILAAADVGLIPS 78 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH--H-HCTEEEE-S-HHHHHHHHC-SEEEE-B
T ss_pred cccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh--c-CCCEEEcCCHHHHHHHHHhCCEEEEEe
Confidence 5788999999999999999 9999999999999999999876 35544 1 227888999832229999999999999
Q ss_pred C-CCcchHHHHHHHhcCCeEEeecCCCccccccCCCe-EeecCHHHHHHHHHHHHhC
Q 023072 130 T-TDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNC-RTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 130 ~-~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g-~l~~d~~~l~~~i~~ll~~ 184 (287)
. .++++.+++|||++|+|||+++.+..+++.....+ ++.+|+++++++|.++++|
T Consensus 79 ~~~~~~~~k~~e~~~~G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 79 RFNEGFPNKLLEAMAAGKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp SS-SCC-HHHHHHHCTT--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred eCCCcCcHHHHHHHHhCCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 6 58899999999999999999999555666544344 4445999999999999875
No 76
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=6.3e-17 Score=142.54 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=155.0
Q ss_pred CCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccC-cchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIG-KKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~-~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
++.++..|..... ....++.++ ++++++.+... .... .... ...++|+|++.+.||++.+++++..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~i~~~g~~~~~k~~~~~i~~~~~~ 224 (381)
T COG0438 151 ADRVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPARIGLL---PEGG---KFVVLYVGRLDPEKGLDLLIEAAAKL 224 (381)
T ss_pred ccEEEECCHHHHHHHHHhCCCCCceEecCCcCHHHcCccccCCC---cccC---ceEEEEeeccChhcCHHHHHHHHHHh
Confidence 3456666666422 123356677 89999877653 1111 0010 12799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 75 QKELAGLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
....+++.+.++|.++. .+.+...+.+++. .+.+.|..+..+ .+++.+|++++||..|++|++++|||++|+|||
T Consensus 225 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi 304 (381)
T COG0438 225 KKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVI 304 (381)
T ss_pred hhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEE
Confidence 88777799999999987 3566667776653 456667777444 788889999999999999999999999999999
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccH----HHHhcCCHHHHHHHHHHHHhc
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTE----AQRHQLSWESATERFLQVAEL 212 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~----~~~~~~sw~~~~~~~~~~~~~ 212 (287)
+++.++ .+.+.++.+|+++. +.+++++++..++++... .+.. .....|+|+.+.+++.+.+..
T Consensus 305 ~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 305 ASDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLLELYEE 376 (381)
T ss_pred ECCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999987 78888765677655 589999999999988722 2222 222589999999999888874
No 77
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=1.1e-17 Score=153.57 Aligned_cols=210 Identities=15% Similarity=0.167 Sum_probs=150.3
Q ss_pred CCeeeeCchhhhh--------ccCCcEEee-ccCCCCccccCcchHHH--hhcC--CCCC---CCcEEEEEecccccCHH
Q 023072 2 GFQVIRLSAATQE--------YANSIICNV-HGVNPKFLEIGKKKKEQ--QQNG--THAF---AKGAYYIGKMVWSKGYK 65 (287)
Q Consensus 2 ~~~Vi~lS~~~~~--------~~~~~i~vi-~gvd~~~~~~~~~~~~~--~~~~--~~~~---~~~i~~vG~~~~~Kg~~ 65 (287)
.++++.-|..+.. +..+.+.+. ..+|.+.+.++...... ..+. .... +..+.-+.++.+.||++
T Consensus 210 ~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~ 289 (495)
T KOG0853|consen 210 AWKILVNSYFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQD 289 (495)
T ss_pred cceEecchhhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCce
Confidence 4667776766643 234446666 88887776643221110 0000 0001 11244466899999999
Q ss_pred HHHHHHHHHHHhc-----CCeEEEEEeCC-cC---------HHHHHHHHHhcCCc--eEEe-cCCCCHH--HHhhhCCE-
Q 023072 66 ELLELLDDHQKEL-----AGLEVDLYGNG-ED---------FNQIQEAAEKLKIV--VRVY-PGRDHAD--LIFHDYKV- 124 (287)
Q Consensus 66 ~ll~a~~~l~~~~-----~~~~l~i~G~g-~~---------~~~l~~~~~~~~l~--~~v~-g~~~~~~--~~~~~adv- 124 (287)
.+++++..+.... ++.++.++|+. .+ .+++.++++++++. ...+ ....+.+ .+++.+.+
T Consensus 290 l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v 369 (495)
T KOG0853|consen 290 LALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGV 369 (495)
T ss_pred eehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceE
Confidence 9999999998776 46788888843 11 45688899999883 2223 5556555 45555544
Q ss_pred EEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec-CHH---HHHHHHHHHHhCCCC--CccHHHH---
Q 023072 125 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRN---GFVEATLKALAEEPA--LPTEAQR--- 194 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~-d~~---~l~~~i~~ll~~~~~--~~~~~~~--- 194 (287)
|+.|.. |.||++++|||+||+|||+++.|| .|++.++.+|++++ +.+ .+++++.++..|+.. +++.+++
T Consensus 370 ~~qPa~-E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV 448 (495)
T KOG0853|consen 370 LYQPAN-EHFGIVPIEAMACGLPVVATNNGGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNGLKRV 448 (495)
T ss_pred EecCCC-CCccceeHHHHhcCCCEEEecCCCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 556766 999999999999999999999999 99999999999987 666 599999999999887 6666555
Q ss_pred -hcCCHHHHHHHHHHHHhc
Q 023072 195 -HQLSWESATERFLQVAEL 212 (287)
Q Consensus 195 -~~~sw~~~~~~~~~~~~~ 212 (287)
+.|+|.++.+++.+....
T Consensus 449 ~e~fs~~~~~~ri~~~~~~ 467 (495)
T KOG0853|consen 449 KEMFSWQHYSERIASVLGK 467 (495)
T ss_pred HHHHhHHHHHHHHHHHhHh
Confidence 469999999999988773
No 78
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.74 E-value=3.5e-17 Score=147.82 Aligned_cols=176 Identities=16% Similarity=0.199 Sum_probs=129.9
Q ss_pred CCeeeeCchhhhh-ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHH-HHHHHHHHHhc
Q 023072 2 GFQVIRLSAATQE-YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKEL-LELLDDHQKEL 78 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~l-l~a~~~l~~~~ 78 (287)
+|+|++.|+.+.+ ++++++.++ ||++.+++.+... ..........+.++++|+....|+...+ ++++..+.+
T Consensus 135 ~~~vi~~s~~~~~~~~~~~~~~i~n~v~~~~~~~~~~---~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~-- 209 (350)
T cd03785 135 ADRVALSFPETAKYFPKDKAVVTGNPVREEILALDRE---RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLR-- 209 (350)
T ss_pred hCEEEEcchhhhhcCCCCcEEEECCCCchHHhhhhhh---HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhc--
Confidence 6899999999887 577899999 9999887754322 1111111223357788877777777654 588887752
Q ss_pred CCeEE-EEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC--
Q 023072 79 AGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-- 155 (287)
Q Consensus 79 ~~~~l-~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-- 155 (287)
+++++ .++|+| +.+.+++.+++++.++++.|..++..++|+.||++|.+|- +++++|||+||+|||+++.++
T Consensus 210 ~~~~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~~ 284 (350)
T cd03785 210 KRLQVIHQTGKG-DLEEVKKAYEELGVNYEVFPFIDDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYAA 284 (350)
T ss_pred cCeEEEEEcCCc-cHHHHHHHHhccCCCeEEeehhhhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCCC
Confidence 45664 567888 5677888777765577778887555599999999998662 689999999999999987643
Q ss_pred -------ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC
Q 023072 156 -------NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 156 -------~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~ 187 (287)
.+.+.+..+|++++ |+++++++|..++++++.
T Consensus 285 ~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~ 327 (350)
T cd03785 285 DDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPER 327 (350)
T ss_pred CCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHH
Confidence 35666666887775 799999999999987543
No 79
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.74 E-value=8.7e-17 Score=147.30 Aligned_cols=204 Identities=14% Similarity=0.077 Sum_probs=140.3
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCc-EEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKG-AYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~-i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|++++.|+.+.+ ++++++.++ +.+++.+.............+.....+. +++.|++...||+..+++++.+
T Consensus 148 ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~ 227 (380)
T PRK13609 148 VDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMS 227 (380)
T ss_pred CCEEEECCHHHHHHHHHcCCChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhh
Confidence 7899999998854 466788888 7776554332222111111111111123 4456788888999999998753
Q ss_pred HHHhcCCeEEEEEeC-Cc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 74 HQKELAGLEVDLYGN-GE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 74 l~~~~~~~~l~i~G~-g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
.++++++++|+ +. ..+.+++.+.+++.+++++|..++..++|+.||++|. ++.|++++|||+||+|||++
T Consensus 228 ----~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~ 299 (380)
T PRK13609 228 ----VPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILY 299 (380)
T ss_pred ----CCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEEC
Confidence 36889887743 32 3567777776666567888888766689999999984 45689999999999999998
Q ss_pred cC-CCc-----cccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhcc
Q 023072 152 NH-PSN-----DFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 213 (287)
Q Consensus 152 ~~-~~~-----e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 213 (287)
+. ++. +++.+...++...|+++++++|.+++++++. .++.+.+ ..++|+.+++.+++.+...
T Consensus 300 ~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~~ 372 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHVE 372 (380)
T ss_pred CCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhhh
Confidence 74 552 2333322334456999999999999998655 4444433 4689999999998887643
No 80
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.73 E-value=7.2e-17 Score=135.46 Aligned_cols=117 Identities=20% Similarity=0.276 Sum_probs=98.6
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH---HHhhhCCEEE
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD---LIFHDYKVFL 126 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~---~~~~~adv~v 126 (287)
..|+|++.++||++.+++++..+.+..++++++++|.+.+.....+.+.+.+. ++.+++.++..+ .+++.||+++
T Consensus 107 ~~~~g~~~~~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l 186 (229)
T cd01635 107 KVFVGRLAPEKGLDDLIEAFALLKERGPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFV 186 (229)
T ss_pred eEEEEeecccCCHHHHHHHHHHHHHhCCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEE
Confidence 45999999999999999999999988899999999999886666654455444 666678864333 5666699999
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEee
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTY 168 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~ 168 (287)
+||..|++|++++|||+||+|||+|+.++ .+++.++.+|+++
T Consensus 187 ~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 187 LPSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred ecccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999999999999999999999999988 8888888888764
No 81
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.4e-16 Score=147.94 Aligned_cols=195 Identities=17% Similarity=0.179 Sum_probs=149.9
Q ss_pred CcEEee-ccCCCCccccCcchHH------------H------hhcCCCC---CCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 18 SIICNV-HGVNPKFLEIGKKKKE------------Q------QQNGTHA---FAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 18 ~~i~vi-~gvd~~~~~~~~~~~~------------~------~~~~~~~---~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
.+++-| ||+|.++..|...... . ...-... ..+.+.++||+.++||++.+++++..+.
T Consensus 241 ~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l 320 (487)
T COG0297 241 GKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELL 320 (487)
T ss_pred ccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHH
Confidence 456777 9999887766544311 0 0001111 1246999999999999999999999998
Q ss_pred HhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 76 KELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
+.. ++++|.|.|+. .+.+..+++++...+.+.-+.+..- .+|..+|++++||++|++|++-++||..|+++|+.
T Consensus 321 ~~~--~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv~ 398 (487)
T COG0297 321 EQG--WQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILMPSRFEPCGLTQLYAMRYGTLPIVR 398 (487)
T ss_pred HhC--ceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceEc
Confidence 874 99999999943 5668888888887666654544443 89999999999999999999999999999999999
Q ss_pred cCCC-cccccc--------CCCeEeec--CHHHHHHHHHHHHhCCCC-Cc-cH-----HHHhcCCHHHHHHHHHHHHhcc
Q 023072 152 NHPS-NDFFKQ--------FPNCRTYD--DRNGFVEATLKALAEEPA-LP-TE-----AQRHQLSWESATERFLQVAELD 213 (287)
Q Consensus 152 ~~~~-~e~i~~--------~~~g~l~~--d~~~l~~~i~~ll~~~~~-~~-~~-----~~~~~~sw~~~~~~~~~~~~~~ 213 (287)
.+|| .+.+.+ ..+|+++. |+++++.+|.+++.-... ++ -+ ....+|+|+..++++.+.|+..
T Consensus 399 ~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~ 478 (487)
T COG0297 399 ETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPL 478 (487)
T ss_pred ccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHH
Confidence 9999 776664 36788875 999999999988765443 11 11 1114899999999999999965
Q ss_pred c
Q 023072 214 Q 214 (287)
Q Consensus 214 ~ 214 (287)
.
T Consensus 479 ~ 479 (487)
T COG0297 479 L 479 (487)
T ss_pred h
Confidence 5
No 82
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.71 E-value=1.5e-16 Score=144.52 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=141.2
Q ss_pred CCeeeeCchhhh-hccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHH-HHHHHHHHhc
Q 023072 2 GFQVIRLSAATQ-EYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELL-ELLDDHQKEL 78 (287)
Q Consensus 2 ~~~Vi~lS~~~~-~~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll-~a~~~l~~~~ 78 (287)
||+|++.++.+. ..+..++.++ ||++.+.+.+..... ........+.++++|+....|++..++ +++.++.+.
T Consensus 137 ~d~ii~~~~~~~~~~~~~~i~vi~n~v~~~~~~~~~~~~---~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~- 212 (357)
T PRK00726 137 AKKVATAFPGAFPEFFKPKAVVTGNPVREEILALAAPPA---RLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA- 212 (357)
T ss_pred hchheECchhhhhccCCCCEEEECCCCChHhhcccchhh---hccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-
Confidence 678888887542 2567899999 999988765422111 111111233688899888888876655 888888543
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC---
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS--- 155 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~--- 155 (287)
+ ..+.++|+|+. +.+.+..+ +++++.++|..++..++|..||++|.+| .+.+++|||+||+|||++..++
T Consensus 213 ~-~~~~~~G~g~~-~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~----g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 213 L-QVIHQTGKGDL-EEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRA----GASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred c-EEEEEcCCCcH-HHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECC----CHHHHHHHHHhCCCEEEecCCCCCc
Confidence 3 55778899875 55555555 7777777888866669999999999866 2699999999999999987642
Q ss_pred ------ccccccCCCeEeec--C--HHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHH
Q 023072 156 ------NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVA 210 (287)
Q Consensus 156 ------~e~i~~~~~g~l~~--d--~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~ 210 (287)
.+.+.+...|++++ | +++++++|.+++++++. .++.+.+ +.++-+++++.+.++.
T Consensus 286 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 286 DHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred CcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 24566777887765 5 99999999999998665 4444444 3567777777776654
No 83
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=3.5e-16 Score=144.00 Aligned_cols=203 Identities=12% Similarity=0.084 Sum_probs=141.0
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCC-cEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAK-GAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~-~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
+|++++.|+.+.+ ++++++.++ +++++.+.............+.....+ .+++.|++...||++.+++++.
T Consensus 148 ~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~- 226 (391)
T PRK13608 148 STRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNKFETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDIL- 226 (391)
T ss_pred CCEEEECCHHHHHHHHHcCCCHHHEEEECeecChHhcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHH-
Confidence 6889999998854 466788988 888877654332221111111111112 3556889998999999999863
Q ss_pred HHHhcCCeEEEEE-eCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEee
Q 023072 74 HQKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 74 l~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s 151 (287)
+..++++++++ |.+.. .+.+.+.... ..++.++|..++..++|+.||++|. .+.|+++.|||+||+|+|++
T Consensus 227 --~~~~~~~~vvv~G~~~~l~~~l~~~~~~-~~~v~~~G~~~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~ 299 (391)
T PRK13608 227 --AKSANAQVVMICGKSKELKRSLTAKFKS-NENVLILGYTKHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFL 299 (391)
T ss_pred --hcCCCceEEEEcCCCHHHHHHHHHHhcc-CCCeEEEeccchHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEEC
Confidence 23467888766 54322 2344433222 2266778888766699999999996 35689999999999999999
Q ss_pred cC-CCcc-----ccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhc
Q 023072 152 NH-PSND-----FFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 212 (287)
Q Consensus 152 ~~-~~~e-----~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 212 (287)
+. ++.+ ++.+...|+...|.++++++|.+++++++. .++.+.+ +.++|+.+++.+++.+..
T Consensus 300 ~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 300 NPAPGQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIGH 371 (391)
T ss_pred CCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Confidence 74 5432 334545567777999999999999988655 4555544 469999999999988864
No 84
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.64 E-value=3.5e-15 Score=134.66 Aligned_cols=179 Identities=16% Similarity=0.183 Sum_probs=124.1
Q ss_pred CCeeeeCchhhhhccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHH-HHHHHHHHHHhcC
Q 023072 2 GFQVIRLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKE-LLELLDDHQKELA 79 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~-ll~a~~~l~~~~~ 79 (287)
||+|++.|+.+.++- +..+| ||++..++.+..... ..+.....+.++++|+....|++.. +++++..+.+.
T Consensus 136 ~d~ii~~~~~~~~~~--~~~~i~n~v~~~~~~~~~~~~---~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~-- 208 (348)
T TIGR01133 136 AKKVLISFPGAKDHF--EAVLVGNPVRQEIRSLPVPRE---RFGLREGKPTILVLGGSQGAKILNELVPKALAKLAEK-- 208 (348)
T ss_pred hCeeEECchhHhhcC--CceEEcCCcCHHHhcccchhh---hcCCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhhc--
Confidence 789999999987654 34778 999977665432111 1111122346889998777888765 45888877543
Q ss_pred CeEEEEE-eCCcCHHHHHHHHHhcCCceEE-ecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC--
Q 023072 80 GLEVDLY-GNGEDFNQIQEAAEKLKIVVRV-YPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-- 155 (287)
Q Consensus 80 ~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v-~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-- 155 (287)
+++++++ |++ +.+.+++.++++++...+ +. ..+..++|+.||++|.++ + +++++|||++|+|+|+++.++
T Consensus 209 ~~~~~~~~g~~-~~~~l~~~~~~~~l~~~v~~~-~~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~ 282 (348)
T TIGR01133 209 GIQIVHQTGKN-DLEKVKNVYQELGIEAIVTFI-DENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAA 282 (348)
T ss_pred CcEEEEECCcc-hHHHHHHHHhhCCceEEecCc-ccCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCc
Confidence 4555444 544 447788888887764333 23 113348999999999864 2 789999999999999998753
Q ss_pred ------ccccccCCCeEeec--C--HHHHHHHHHHHHhCCCC--CccHHH
Q 023072 156 ------NDFFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQ 193 (287)
Q Consensus 156 ------~e~i~~~~~g~l~~--d--~~~l~~~i~~ll~~~~~--~~~~~~ 193 (287)
.+++.+..+|++++ | ++++++++.+++++++. +++.+.
T Consensus 283 ~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 283 DDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred cchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 24677778898775 4 99999999999987554 344444
No 85
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.62 E-value=4.1e-15 Score=138.68 Aligned_cols=165 Identities=14% Similarity=0.054 Sum_probs=125.1
Q ss_pred EEee-ccCCCCccccCcchH-----HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeCC
Q 023072 20 ICNV-HGVNPKFLEIGKKKK-----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNG 89 (287)
Q Consensus 20 i~vi-~gvd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g 89 (287)
+.++ .|||++.|....... ...........+.|++++|+++.||+...++|++.+.+.+|+ +.|+++|.+
T Consensus 250 v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~p 329 (487)
T TIGR02398 250 LGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVP 329 (487)
T ss_pred EEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCC
Confidence 5677 999999885432111 011111222345799999999999999999999999999996 689988876
Q ss_pred c-----C----HHHHHHHHHhc-------CC-ceEE-ecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC---
Q 023072 90 E-----D----FNQIQEAAEKL-------KI-VVRV-YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK--- 146 (287)
Q Consensus 90 ~-----~----~~~l~~~~~~~-------~l-~~~v-~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~--- 146 (287)
. + ..++++++.+. +. .+.+ .+.+++.+ .+|+.||+++.+|..||++++..||+||+.
T Consensus 330 sr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~ 409 (487)
T TIGR02398 330 AASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLD 409 (487)
T ss_pred CcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCC
Confidence 3 2 23345555443 22 2334 47778777 999999999999999999999999999999
Q ss_pred -eEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 147 -IVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 147 -PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
|+|.|..+| .+.+ .++++++ |+++++++|.++|+.+..
T Consensus 410 GvLILSefaGaa~~l---~~AllVNP~d~~~~A~ai~~AL~m~~~ 451 (487)
T TIGR02398 410 GVLVLSEFAGAAVEL---KGALLTNPYDPVRMDETIYVALAMPKA 451 (487)
T ss_pred CCEEEeccccchhhc---CCCEEECCCCHHHHHHHHHHHHcCCHH
Confidence 999999977 4444 2577776 999999999999998765
No 86
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.60 E-value=1.2e-14 Score=137.49 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=127.5
Q ss_pred cEEEEE--ecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCH---HHHHHHHHhcCCc--------------------
Q 023072 51 GAYYIG--KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDF---NQIQEAAEKLKIV-------------------- 105 (287)
Q Consensus 51 ~i~~vG--~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~---~~l~~~~~~~~l~-------------------- 105 (287)
.+++++ |+ +.|.++.+|+++.++....|+++|.++|.+.+. ..++++++++++.
T Consensus 321 ~~I~v~idrL-~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (519)
T TIGR03713 321 TEIGFWIDGL-SDEELQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPIL 399 (519)
T ss_pred eEEEEEcCCC-ChHHHHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcc
Confidence 699999 99 999999999999999999999999999988643 4565555555333
Q ss_pred ---------eEE--ecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHH
Q 023072 106 ---------VRV--YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRN 172 (287)
Q Consensus 106 ---------~~v--~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~ 172 (287)
.+| .|..+..+ +.|..+.++|.+|..|+|+ +++||++.|+|+| +-+..++|.++.||++++|..
T Consensus 400 ~~~~~~~~~~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI--nyg~~~~V~d~~NG~li~d~~ 476 (519)
T TIGR03713 400 QTDEEQKEKERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI--NKVETDYVEHNKNGYIIDDIS 476 (519)
T ss_pred cchhhcccccEEEEEecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee--ecCCceeeEcCCCcEEeCCHH
Confidence 334 45555333 9999999999999999999 9999999999999 556799999999999999999
Q ss_pred HHHHHHHHHHhCCCC--CccH---HHHhcCCHHHHHHHHHHH
Q 023072 173 GFVEATLKALAEEPA--LPTE---AQRHQLSWESATERFLQV 209 (287)
Q Consensus 173 ~l~~~i~~ll~~~~~--~~~~---~~~~~~sw~~~~~~~~~~ 209 (287)
+|++++..+|.+... ..+. +..++||-+++.++|.++
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~~ 518 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNEL 518 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 999999999998654 2222 333688888888887764
No 87
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.58 E-value=1.3e-14 Score=132.15 Aligned_cols=201 Identities=10% Similarity=0.033 Sum_probs=127.6
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCc-c-hHHHhhcCCCCCCCcEEEEE-ec-ccccCHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGK-K-KKEQQQNGTHAFAKGAYYIG-KM-VWSKGYKELLEL 70 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~-~-~~~~~~~~~~~~~~~i~~vG-~~-~~~Kg~~~ll~a 70 (287)
||.+++.|+...+ ++++++.++ |++....+.... . .......... ....+++.+ +. ...||++.++++
T Consensus 142 ad~~~~~s~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~-~~~~vl~~~hr~~~~~k~~~~ll~a 220 (365)
T TIGR00236 142 ADLHFAPTEQAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGE-DKRYILLTLHRRENVGEPLENIFKA 220 (365)
T ss_pred HHhccCCCHHHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCC-CCCEEEEecCchhhhhhHHHHHHHH
Confidence 6778888888643 567789999 997444332111 1 1110010011 112455555 33 345899999999
Q ss_pred HHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC
Q 023072 71 LDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 146 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~ 146 (287)
+.++.+..|++++++.|.+.. .....+.+.++. ++.+.+...+.+ .+|+.+|+++.+| |..++|||+||+
T Consensus 221 ~~~l~~~~~~~~~vi~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~ 294 (365)
T TIGR00236 221 IREIVEEFEDVQIVYPVHLNP-VVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGK 294 (365)
T ss_pred HHHHHHHCCCCEEEEECCCCh-HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCC
Confidence 999987778899888865432 111112222332 567778777666 8899999999887 566899999999
Q ss_pred eEEee-cCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHH---HhcCCHHHHHHHHHHHH
Q 023072 147 IVVCA-NHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQVA 210 (287)
Q Consensus 147 PVV~s-~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~---~~~~sw~~~~~~~~~~~ 210 (287)
|||++ +.++ .+.+..+ .+++++ |++++++++.++++++.. +++... ....+++++++.+.+.|
T Consensus 295 PvI~~~~~~~~~e~~~~g-~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~~~ 365 (365)
T TIGR00236 295 PVLVLRDTTERPETVEAG-TNKLVGTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLNHY 365 (365)
T ss_pred CEEECCCCCCChHHHhcC-ceEEeCCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHhhC
Confidence 99996 5566 5666555 444555 999999999999987653 222211 12345666666555543
No 88
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.56 E-value=2.8e-14 Score=128.56 Aligned_cols=155 Identities=14% Similarity=0.012 Sum_probs=109.1
Q ss_pred CCCeeeeCchhhhhc------cCCcEEeeccCCCC-ccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY------ANSIICNVHGVNPK-FLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~------~~~~i~vi~gvd~~-~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
.||.||+.|+.+.+. +..++.+++.+++. .... .. .....+.|+|+|++...+++
T Consensus 123 ~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~---~~------~~~~~~~i~yaG~l~k~~~l--------- 184 (333)
T PRK09814 123 LADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIEL---VK------TPSFQKKINFAGNLEKSPFL--------- 184 (333)
T ss_pred hCCEEEECCHHHHHHHHHcCCCcCceEecccccccccccc---cc------cccCCceEEEecChhhchHH---------
Confidence 489999999998763 34566655433322 1111 00 11123379999999843321
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCC-----------CCcchHHHHH
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-----------TDVVCTTTAE 140 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~-----------~E~~~~~~~E 140 (287)
....++++|+|+|+|++.+ ....++.++|.+++.+ .+|+. |+.+.+.. .-.+|.++.|
T Consensus 185 -~~~~~~~~l~i~G~g~~~~-------~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ 255 (333)
T PRK09814 185 -KNWSQGIKLTVFGPNPEDL-------ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSL 255 (333)
T ss_pred -HhcCCCCeEEEECCCcccc-------ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHH
Confidence 1124689999999998643 2333788889999888 67776 55443321 1358999999
Q ss_pred HHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHH
Q 023072 141 ALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKAL 182 (287)
Q Consensus 141 Ama~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll 182 (287)
+||||+|||+++.++ .+++.++.+|+++++.+++++++..+.
T Consensus 256 ymA~G~PVI~~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~ 298 (333)
T PRK09814 256 YLAAGLPVIVWSKAAIADFIVENGLGFVVDSLEELPEIIDNIT 298 (333)
T ss_pred HHHCCCCEEECCCccHHHHHHhCCceEEeCCHHHHHHHHHhcC
Confidence 999999999999988 899999999999999999999998853
No 89
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.55 E-value=1.8e-13 Score=118.80 Aligned_cols=178 Identities=15% Similarity=0.080 Sum_probs=134.8
Q ss_pred CCeeeeCchhhhh-c----cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-Y----ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~----~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
+|-|++-|..+++ + ...+..+| +..+.+-+...... +-.....++++|.+.|+|++. +++.++-..
T Consensus 223 ad~vm~NssWT~nHI~qiW~~~~~~iVyPPC~~e~lks~~~t-------e~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~ 294 (465)
T KOG1387|consen 223 ADIVMTNSSWTNNHIKQIWQSNTCSIVYPPCSTEDLKSKFGT-------EGERENQLLSLAQFRPEKNHK-ILQLFALYL 294 (465)
T ss_pred ceEEEecchhhHHHHHHHhhccceeEEcCCCCHHHHHHHhcc-------cCCcceEEEEEeecCcccccH-HHHHHHHHH
Confidence 5778888988876 2 34667777 88887733211111 111223799999999999999 666655444
Q ss_pred Hhc------CCeEEEEEeCCcC---H---HHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHH
Q 023072 76 KEL------AGLEVDLYGNGED---F---NQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 139 (287)
Q Consensus 76 ~~~------~~~~l~i~G~g~~---~---~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~ 139 (287)
... ++++|.|+|+... . +.+++++.++++ ++.|.-..+.++ .+|..|.+.|+.-..|.||+.+.
T Consensus 295 ~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVV 374 (465)
T KOG1387|consen 295 KNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVV 374 (465)
T ss_pred hcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHH
Confidence 333 4689999997433 2 236677888877 445557788887 99999999999999999999999
Q ss_pred HHHhcCCeEEeecCCC--cccccc---CCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 140 EALAMGKIVVCANHPS--NDFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 140 EAma~G~PVV~s~~~~--~e~i~~---~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
|+||+|+..|+.+.|| .+++.. ..+|++..+.++.++++.+++.....
T Consensus 375 EyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~~~~ 427 (465)
T KOG1387|consen 375 EYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKLNYD 427 (465)
T ss_pred HHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHcCHH
Confidence 9999999999999988 676654 35789999999999999999987665
No 90
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.52 E-value=9e-14 Score=126.26 Aligned_cols=178 Identities=16% Similarity=0.078 Sum_probs=119.8
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccC-CCCccccCcchHH--HhhcCCCCCCCcEEEEEeccc---ccCHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGV-NPKFLEIGKKKKE--QQQNGTHAFAKGAYYIGKMVW---SKGYKELL 68 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gv-d~~~~~~~~~~~~--~~~~~~~~~~~~i~~vG~~~~---~Kg~~~ll 68 (287)
+|.+++.|+...+ ++++++.++ |++ |...+........ ....+.......+++.|+... .||++.++
T Consensus 142 ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~ 221 (363)
T cd03786 142 SDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEIL 221 (363)
T ss_pred hhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHH
Confidence 5777888887654 457789999 885 4332221111100 001111111124557777764 79999999
Q ss_pred HHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcC---CceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHh
Q 023072 69 ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK---IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA 143 (287)
Q Consensus 69 ~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~---l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma 143 (287)
+++..+... ++.+++.|++...+.+++.+.+++ .++++.+...+.+ .+|+.||++|.+|- + .+.|||+
T Consensus 222 ~al~~l~~~--~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg----g-i~~Ea~~ 294 (363)
T cd03786 222 EALAELAEE--DVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG----G-IQEEASF 294 (363)
T ss_pred HHHHHHHhc--CCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc----c-HHhhhhh
Confidence 999988543 577777777666678888877765 3566666655545 88999999999984 3 4789999
Q ss_pred cCCeEEeecC-CC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC
Q 023072 144 MGKIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 144 ~G~PVV~s~~-~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~ 187 (287)
+|+|||+++. +. .+.+.++. +..+. |++++++++.++++++..
T Consensus 295 ~g~PvI~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~~i~~ll~~~~~ 340 (363)
T cd03786 295 LGVPVLNLRDRTERPETVESGT-NVLVGTDPEAILAAIEKLLSDEFA 340 (363)
T ss_pred cCCCEEeeCCCCccchhhheee-EEecCCCHHHHHHHHHHHhcCchh
Confidence 9999999976 33 55555443 33333 799999999999998655
No 91
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.51 E-value=1.2e-13 Score=136.82 Aligned_cols=192 Identities=10% Similarity=0.080 Sum_probs=133.0
Q ss_pred EEee-ccCCCCccccCcchHH-----HhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeE--EEEE-----
Q 023072 20 ICNV-HGVNPKFLEIGKKKKE-----QQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLE--VDLY----- 86 (287)
Q Consensus 20 i~vi-~gvd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~--l~i~----- 86 (287)
+.+. .|||++.|...-.... ..........+.|++++|+++.||+...++||+.+.+.+|+++ ++++
T Consensus 328 V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~p 407 (934)
T PLN03064 328 VAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVP 407 (934)
T ss_pred EEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCC
Confidence 4455 8999998864322110 0111112233479999999999999999999999989889864 6666
Q ss_pred --eCCcCHHHHHHHH----Hh----cCC----ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC---
Q 023072 87 --GNGEDFNQIQEAA----EK----LKI----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK--- 146 (287)
Q Consensus 87 --G~g~~~~~l~~~~----~~----~~l----~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~--- 146 (287)
|++++.+.++..+ .+ ++- .+.++ ..++..+ .+|+.||++|+||..||++++..|||||+.
T Consensus 408 sr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~ 487 (934)
T PLN03064 408 TRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKK 487 (934)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCC
Confidence 4555555544433 32 221 23443 3466666 999999999999999999999999999954
Q ss_pred -eEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC-Cc--cH---HHHhcCCHHHHHHHHHHHHhcc
Q 023072 147 -IVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-LP--TE---AQRHQLSWESATERFLQVAELD 213 (287)
Q Consensus 147 -PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~-~~--~~---~~~~~~sw~~~~~~~~~~~~~~ 213 (287)
++|.|...| .+.+ +.++++++ |.++++++|.++++.+.. +. .. .....++|...++.+++.....
T Consensus 488 GvLILSEfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 488 GVLILSEFAGAAQSL--GAGAILVNPWNITEVAASIAQALNMPEEEREKRHRHNFMHVTTHTAQEWAETFVSELNDT 562 (934)
T ss_pred CCeEEeCCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHH
Confidence 444488866 5555 23578876 999999999999996554 11 11 2225789999998877655533
No 92
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.40 E-value=2.6e-12 Score=117.58 Aligned_cols=179 Identities=15% Similarity=0.050 Sum_probs=114.7
Q ss_pred CCeeeeCchhhhhc-cC--CcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEE-EEE-ecccc-cCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-AN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAY-YIG-KMVWS-KGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-~~--~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~-~vG-~~~~~-Kg~~~ll~a~~~l 74 (287)
||+|++.|+....+ .. .++.++ |.+.................+.....+.++ +.| +.... ++.+.+++++..+
T Consensus 135 ~d~i~~~~~~~~~~~~~~g~~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l 214 (380)
T PRK00025 135 TDHVLALFPFEAAFYDKLGVPVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLL 214 (380)
T ss_pred HhhheeCCccCHHHHHhcCCCeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 68889988876553 22 235555 555443221111111111111111122333 334 34343 4578999999999
Q ss_pred HHhcCCeEEEEEeC-CcCHHHHHHHHHhc-CCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 75 QKELAGLEVDLYGN-GEDFNQIQEAAEKL-KIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 75 ~~~~~~~~l~i~G~-g~~~~~l~~~~~~~-~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+..|+++++++|. +...+.+++.+.++ ++++.++. ++...+|+.||++|.+| |.+++|||+||+|||++.
T Consensus 215 ~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI~~~ 287 (380)
T PRK00025 215 QQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLD--GQKREAMAAADAALAAS-----GTVTLELALLKVPMVVGY 287 (380)
T ss_pred HHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEc--ccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEEEEE
Confidence 88888999999976 55567788877777 66665543 23348999999999987 788889999999999872
Q ss_pred -----------------CCC-ccccccCC--CeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 153 -----------------HPS-NDFFKQFP--NCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 153 -----------------~~~-~e~i~~~~--~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
.++ .+++.+.. .+++.+ |++++++.+.++++|++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~ 344 (380)
T PRK00025 288 KVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGAR 344 (380)
T ss_pred ccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHH
Confidence 222 34444432 234443 899999999999998654
No 93
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.36 E-value=1.3e-12 Score=95.38 Aligned_cols=85 Identities=26% Similarity=0.393 Sum_probs=73.9
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH----hc
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQ 196 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~----~~ 196 (287)
++++|+..+++++.++|+||||+|||+++.++ .+++.++.++++++|++++.+++..+++|+.+ ++..+++ ++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNARERVLKR 80 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999977 88888888899999999999999999999876 4444333 58
Q ss_pred CCHHHHHHHHHH
Q 023072 197 LSWESATERFLQ 208 (287)
Q Consensus 197 ~sw~~~~~~~~~ 208 (287)
|+|++.++++++
T Consensus 81 ~t~~~~~~~il~ 92 (92)
T PF13524_consen 81 HTWEHRAEQILE 92 (92)
T ss_pred CCHHHHHHHHHC
Confidence 999999998864
No 94
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.27 E-value=2.5e-10 Score=109.63 Aligned_cols=160 Identities=10% Similarity=0.093 Sum_probs=123.2
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHH--hc--CCeEEEEEeCCcC--------HHHHHHHHHh--cCCceEEecCCCCHH
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQK--EL--AGLEVDLYGNGED--------FNQIQEAAEK--LKIVVRVYPGRDHAD 116 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~--~~--~~~~l~i~G~g~~--------~~~l~~~~~~--~~l~~~v~g~~~~~~ 116 (287)
.++|++|+..+||.+.++..+..+.+ .. .+++|++.|.+.. .+.+.+++++ +..++.|+..++..-
T Consensus 391 ~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~l 470 (601)
T TIGR02094 391 TIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINL 470 (601)
T ss_pred EEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHH
Confidence 68899999999999999999888864 22 3689999999863 3446666666 555677766655443
Q ss_pred --HHhhhCCEEEc-CCC-CCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--------------CHHHHHHH
Q 023072 117 --LIFHDYKVFLN-PST-TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------DRNGFVEA 177 (287)
Q Consensus 117 --~~~~~adv~v~-ps~-~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--------------d~~~l~~~ 177 (287)
.++..+|++++ ||+ +|++|++-+=||.-|.+.+++-.|. .|.. ++.||+.+. |.++|.++
T Consensus 471 A~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~ 549 (601)
T TIGR02094 471 ARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDL 549 (601)
T ss_pred HHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC-CCCcEEEECCCccccccccccCCCHHHHHHH
Confidence 89999999999 999 8999999999999999999998877 5554 667998763 67889998
Q ss_pred HHHHH-----hCCCC-------CccHHHH-h---cCCHHHHHHHHHHHHh
Q 023072 178 TLKAL-----AEEPA-------LPTEAQR-H---QLSWESATERFLQVAE 211 (287)
Q Consensus 178 i~~ll-----~~~~~-------~~~~~~~-~---~~sw~~~~~~~~~~~~ 211 (287)
|.+.+ +++.. .+.++.. . .|||++++++|.+.|-
T Consensus 550 L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 550 LENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 87766 22221 2233333 3 5999999999999874
No 95
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.25 E-value=1.2e-10 Score=108.08 Aligned_cols=124 Identities=10% Similarity=0.266 Sum_probs=103.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCC--CHHHHhhhCCEEEc
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRD--HADLIFHDYKVFLN 127 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~--~~~~~~~~adv~v~ 127 (287)
.+++++. +..|++++.+.+..|+++|.| |.+.+ ...|.++ .++ -++..+++.. ..+++|..||+++.
T Consensus 284 ~~l~~t~-------s~~I~~i~~Lv~~lPd~~f~I-ga~te~s~kL~~L-~~y-~nvvly~~~~~~~l~~ly~~~dlyLd 353 (438)
T TIGR02919 284 QALILTN-------SDQIEHLEEIVQALPDYHFHI-AALTEMSSKLMSL-DKY-DNVKLYPNITTQKIQELYQTCDIYLD 353 (438)
T ss_pred cEEEECC-------HHHHHHHHHHHHhCCCcEEEE-EecCcccHHHHHH-Hhc-CCcEEECCcChHHHHHHHHhccEEEE
Confidence 5777772 899999999999999999999 87776 6778887 777 4666676644 34499999999999
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecCCC--ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~~~--~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
.|..|++++++.||++.|+|||+.+... .+++.+ |.+++ ++++|+++|.++++++..
T Consensus 354 in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d~~~ 414 (438)
T TIGR02919 354 INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLNDPNQ 414 (438)
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999943 666666 55554 999999999999998643
No 96
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.20 E-value=2.3e-10 Score=105.20 Aligned_cols=144 Identities=13% Similarity=0.013 Sum_probs=94.7
Q ss_pred CCeeeeCchhhhhc-cC--CcEEee-ccCCCCcccc-CcchHHHhhcCCCCCCCcEEEEE--eccc-ccCHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-AN--SIICNV-HGVNPKFLEI-GKKKKEQQQNGTHAFAKGAYYIG--KMVW-SKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-~~--~~i~vi-~gvd~~~~~~-~~~~~~~~~~~~~~~~~~i~~vG--~~~~-~Kg~~~ll~a~~~ 73 (287)
||+|+..++...++ .+ .+..++ |++..++... ..........+.....+.|+++| |..+ .|++..+++++..
T Consensus 139 ~d~v~~~~~~e~~~~~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~ 218 (385)
T TIGR00215 139 TDFLLAILPFEKAFYQKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQL 218 (385)
T ss_pred HhHhhccCCCcHHHHHhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 78888888877654 22 356677 8876554321 11111111111111223555553 6665 7899999999999
Q ss_pred HHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCce--EEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 74 HQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVV--RVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 74 l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~--~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
+.+..|++++++. +++...+.+++..+.++... .+++. +...+|+.||++|.+| |.+++|+|+||+|+|.
T Consensus 219 l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~Vv 291 (385)
T TIGR00215 219 LEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG--DARKAMFAADAALLAS-----GTAALEAALIKTPMVV 291 (385)
T ss_pred HHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc--hHHHHHHhCCEEeecC-----CHHHHHHHHcCCCEEE
Confidence 9888889988775 44444566666666664433 33432 3347999999999999 7788899999999988
Q ss_pred ec
Q 023072 151 AN 152 (287)
Q Consensus 151 s~ 152 (287)
..
T Consensus 292 ~y 293 (385)
T TIGR00215 292 GY 293 (385)
T ss_pred EE
Confidence 84
No 97
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=6e-10 Score=97.22 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=119.2
Q ss_pred EEEEE--ecccccCHHHHHHHHHHHHH-------hcCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEE-ecCCCCHH--HH
Q 023072 52 AYYIG--KMVWSKGYKELLELLDDHQK-------ELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRV-YPGRDHAD--LI 118 (287)
Q Consensus 52 i~~vG--~~~~~Kg~~~ll~a~~~l~~-------~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v-~g~~~~~~--~~ 118 (287)
.+.|+ ...+..++..|++|+....+ ..|.+-.+|.|.|+..+...+.++++++ ++.| .+...-++ .+
T Consensus 256 allvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~l 335 (444)
T KOG2941|consen 256 ALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKL 335 (444)
T ss_pred eEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhH
Confidence 45555 57788999999999985422 2467778888999999999999999888 5566 35554444 78
Q ss_pred hhhCCEEEcC--CCC-CcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC------C
Q 023072 119 FHDYKVFLNP--STT-DVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA------L 188 (287)
Q Consensus 119 ~~~adv~v~p--s~~-E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~------~ 188 (287)
+..||+.|+. |.+ =..|+++++...||+||++-+-.. .|.+.+++||++++|.+++++.+..++++-+. +
T Consensus 336 l~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~ 415 (444)
T KOG2941|consen 336 LASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQ 415 (444)
T ss_pred hhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999887764 333 338999999999999999999988 99999999999999999999999999996554 2
Q ss_pred ccHHHH--hcCCHHHHHHHH
Q 023072 189 PTEAQR--HQLSWESATERF 206 (287)
Q Consensus 189 ~~~~~~--~~~sw~~~~~~~ 206 (287)
+..+.+ +.++|+..-++.
T Consensus 416 lkkn~~e~~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 416 LKKNLREEQELRWDESWERT 435 (444)
T ss_pred HHHhhHHHHhhhHHHHHHHh
Confidence 222222 356676655443
No 98
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.09 E-value=1.4e-09 Score=102.02 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=65.3
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccccc-CCCe-Eeec----CHHHHHHHHHHHHhC-
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNC-RTYD----DRNGFVEATLKALAE- 184 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~-~~~g-~l~~----d~~~l~~~i~~ll~~- 184 (287)
+++..||+.|+||++|+||.|-+|+.++|+|.|+|+..| .+.+.+ ...| .+++ +.++.++.|.+.+.+
T Consensus 465 dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f 544 (633)
T PF05693_consen 465 DFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKF 544 (633)
T ss_dssp HHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHH
T ss_pred HHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999977 333332 2345 4443 666666665555443
Q ss_pred ---CCCC---ccH---HHHhcCCHHHHHHHHHHHHhcccc
Q 023072 185 ---EPAL---PTE---AQRHQLSWESATERFLQVAELDQA 215 (287)
Q Consensus 185 ---~~~~---~~~---~~~~~~sw~~~~~~~~~~~~~~~~ 215 (287)
...+ +.. ...+.++|+.....|.+.|+++..
T Consensus 545 ~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~~Ay~~AL~ 584 (633)
T PF05693_consen 545 CQLSRRQRIIQRNRAERLSDLADWKNFGKYYEKAYDLALR 584 (633)
T ss_dssp HT--HHHHHHHHHHHHHHGGGGBHHHHCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 2220 011 111589999999999999997663
No 99
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.87 E-value=6.5e-08 Score=95.08 Aligned_cols=161 Identities=12% Similarity=0.112 Sum_probs=117.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhc----CCeEEEEEeCCcC--------HHHHHHHHH--hcCCceEEecCCCCHH
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKEL----AGLEVDLYGNGED--------FNQIQEAAE--KLKIVVRVYPGRDHAD 116 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~----~~~~l~i~G~g~~--------~~~l~~~~~--~~~l~~~v~g~~~~~~ 116 (287)
.|.|+.|+..+|+.+.+++.+..+.+.. ..++|++.|.+.. .+.+.++++ ++..++.|+..++-.-
T Consensus 480 tigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~l 559 (778)
T cd04299 480 TIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMAL 559 (778)
T ss_pred EEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHH
Confidence 5888999999999999999988875521 3589999998763 124555566 3444666666665443
Q ss_pred --HHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--------------CHHHHHHH
Q 023072 117 --LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--------------DRNGFVEA 177 (287)
Q Consensus 117 --~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--------------d~~~l~~~ 177 (287)
.++..||++++||+ .|++|++-+-||.-|.+-+++-.|. .|.. ++.||+.+. |.++|.+.
T Consensus 560 A~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~ 638 (778)
T cd04299 560 ARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDL 638 (778)
T ss_pred HHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc-CCCCceEeCCCccccChhhcchhhHHHHHHH
Confidence 89999999999999 8999999999999999999999888 6665 778998764 34455566
Q ss_pred HHHHHh----CC-----CC---CccHH-HHh---cCCHHHHHHHHHHHHhc
Q 023072 178 TLKALA----EE-----PA---LPTEA-QRH---QLSWESATERFLQVAEL 212 (287)
Q Consensus 178 i~~ll~----~~-----~~---~~~~~-~~~---~~sw~~~~~~~~~~~~~ 212 (287)
|++.+- +. +. .+.++ ... .|+|++++++|.+.|-.
T Consensus 639 Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~ 689 (778)
T cd04299 639 LENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYL 689 (778)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHH
Confidence 654332 32 11 22222 223 89999999999876653
No 100
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.68 E-value=3.6e-07 Score=85.78 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=84.9
Q ss_pred CcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeCCc--C---H----HHHHHHHHh----cCC----ceEE
Q 023072 50 KGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE--D---F----NQIQEAAEK----LKI----VVRV 108 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~--~---~----~~l~~~~~~----~~l----~~~v 108 (287)
+.|+-+.|+++.||+..=+.|+..+.+++|+ +.|+-++... + . .++.+++.+ ++- .+.+
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~ 356 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIY 356 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEE
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEE
Confidence 3577788999999999999999999988874 5566555422 1 1 233333332 332 3455
Q ss_pred e-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCe----EEeecCCC-ccccccCCCeEeec--CHHHHHHHH
Q 023072 109 Y-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKI----VVCANHPS-NDFFKQFPNCRTYD--DRNGFVEAT 178 (287)
Q Consensus 109 ~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~P----VV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i 178 (287)
+ ..++..+ .+|+.||+++.+|..+|..++..|+.+|... +|.|.-.| .+.+.+ .+++++ |.++++++|
T Consensus 357 ~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L~~--~al~VNP~d~~~~A~ai 434 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQLSE--AALLVNPWDIEEVADAI 434 (474)
T ss_dssp E-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT-TT--S-EEE-TT-HHHHHHHH
T ss_pred EecCCCHHHHHHHHHhhhhEEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHcCC--ccEEECCCChHHHHHHH
Confidence 4 5567676 9999999999999999999999999999875 77887766 555554 346666 999999999
Q ss_pred HHHHhCCCC
Q 023072 179 LKALAEEPA 187 (287)
Q Consensus 179 ~~ll~~~~~ 187 (287)
.++|+.+..
T Consensus 435 ~~AL~M~~~ 443 (474)
T PF00982_consen 435 HEALTMPPE 443 (474)
T ss_dssp HHHHT--HH
T ss_pred HHHHcCCHH
Confidence 999998665
No 101
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.66 E-value=3.6e-07 Score=85.13 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=125.8
Q ss_pred EEee-ccCCCCccccCcch---H-HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeCCc
Q 023072 20 ICNV-HGVNPKFLEIGKKK---K-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE 90 (287)
Q Consensus 20 i~vi-~gvd~~~~~~~~~~---~-~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~ 90 (287)
+.+. -|||++.|...-.. . ...........+.|+-+.|+++.||+..=++||+.+.+.+|+ +.|+-+....
T Consensus 221 v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~ps 300 (474)
T PRK10117 221 TEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTS 300 (474)
T ss_pred EEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCC
Confidence 4444 88998877532111 0 011111122233566777999999999999999999988885 4555554322
Q ss_pred -----CHHH----HHHHHHhc----CC----ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC----
Q 023072 91 -----DFNQ----IQEAAEKL----KI----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK---- 146 (287)
Q Consensus 91 -----~~~~----l~~~~~~~----~l----~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~---- 146 (287)
+..+ +++++.+. +- .++++ ..+++.+ .+|+.||+++.++..+|+-++..|+.||..
T Consensus 301 R~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTplRDGMNLVAkEyva~q~~~~~ 380 (474)
T PRK10117 301 RGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANP 380 (474)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecccccccccccchheeeecCCCC
Confidence 2223 33334332 21 24443 4567676 999999999999999999999999999976
Q ss_pred -eEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCCCccH------HHHhcCCHHHHHHHHHHHHhc
Q 023072 147 -IVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTE------AQRHQLSWESATERFLQVAEL 212 (287)
Q Consensus 147 -PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~~~~~------~~~~~~sw~~~~~~~~~~~~~ 212 (287)
.+|.|.-.| .+.+. ..++++ |.++++++|.++|+.+..+... .....++-..-++.+++....
T Consensus 381 GvLILSefAGaA~~L~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~ 453 (474)
T PRK10117 381 GVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLDVIVKNDINHWQECFISDLKQ 453 (474)
T ss_pred ccEEEecccchHHHhC---CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHH
Confidence 378888866 55553 357776 9999999999999987762111 122355666667776665553
No 102
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.49 E-value=2.6e-06 Score=79.11 Aligned_cols=160 Identities=13% Similarity=0.025 Sum_probs=100.9
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC---ceEEecCCCCHH--HHhhhCCE
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKV 124 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~~~v~g~~~~~~--~~~~~adv 124 (287)
.|+|.+--...|=-+..+++|.++.+..|+..|++...... .+.+++.+.+.|+ ++.|.+..+..+ ..|+.+|+
T Consensus 285 ~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI 364 (468)
T PF13844_consen 285 AVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADI 364 (468)
T ss_dssp SEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SE
T ss_pred ceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCE
Confidence 47777766788999999999999999999999988865443 5678888888887 455556666555 77888999
Q ss_pred EEcCCCCCcchHHHHHHHhcCCeEEeecCCC------cccccc-CCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH-
Q 023072 125 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR- 194 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~------~e~i~~-~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~- 194 (287)
++-+ ..-+-+++.+||+.||+|||+-.... ..++.. +-.-++..|.++.++.-.++.+|++. .++...+
T Consensus 365 ~LDT-~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~ 443 (468)
T PF13844_consen 365 CLDT-FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRD 443 (468)
T ss_dssp EE---SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred EeeC-CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9997 44455899999999999999987533 112222 11226777999999999999998665 2222222
Q ss_pred -----hcCCHHHHHHHHHHHHh
Q 023072 195 -----HQLSWESATERFLQVAE 211 (287)
Q Consensus 195 -----~~~sw~~~~~~~~~~~~ 211 (287)
.-|+-...++.+++.|+
T Consensus 444 ~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 444 RRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHhhCCCCCHHHHHHHHHHHHH
Confidence 13566666666666665
No 103
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.39 E-value=8e-06 Score=75.41 Aligned_cols=172 Identities=15% Similarity=0.057 Sum_probs=107.7
Q ss_pred CCeeeeCchhhhh-ccC--CcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEE--e-cccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE-YAN--SIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIG--K-MVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-~~~--~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG--~-~~~~Kg~~~ll~a~~~l 74 (287)
|++|.+--+...+ +.+ .++.++ |.+-..+...... ....+ .+.++.++ | -+..+++..+++++..+
T Consensus 161 a~~v~~~~~~t~~~l~~~g~k~~~vGnPv~d~l~~~~~~---~l~~~----~~~lllLpGSR~ae~~~~lp~~l~al~~L 233 (396)
T TIGR03492 161 CLAVFVRDRLTARDLRRQGVRASYLGNPMMDGLEPPERK---PLLTG----RFRIALLPGSRPPEAYRNLKLLLRALEAL 233 (396)
T ss_pred hCEEeCCCHHHHHHHHHCCCeEEEeCcCHHhcCcccccc---ccCCC----CCEEEEECCCCHHHHHccHHHHHHHHHHH
Confidence 5555555544444 333 477778 8877665432211 00111 12454444 3 33446888999999999
Q ss_pred HHhcCCeEEEEEe-CCcCHHHHHHHHHhcCCc----------------eEEecCCCCHHHHhhhCCEEEcCCCCCcchHH
Q 023072 75 QKELAGLEVDLYG-NGEDFNQIQEAAEKLKIV----------------VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTT 137 (287)
Q Consensus 75 ~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~----------------~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~ 137 (287)
.+. +++.+++.- ...+.+.+++...+.+.. +.+....++..++|+.||++|..| |.+
T Consensus 234 ~~~-~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rS-----Gt~ 307 (396)
T TIGR03492 234 PDS-QPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMA-----GTA 307 (396)
T ss_pred hhC-CCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECc-----CHH
Confidence 665 778777653 445567777666654432 344444444558999999999874 456
Q ss_pred HHHHHhcCCeEEeecCCCc----ccccc-----CCCeEeec-CHHHHHHHHHHHHhCCC
Q 023072 138 TAEALAMGKIVVCANHPSN----DFFKQ-----FPNCRTYD-DRNGFVEATLKALAEEP 186 (287)
Q Consensus 138 ~~EAma~G~PVV~s~~~~~----e~i~~-----~~~g~l~~-d~~~l~~~i~~ll~~~~ 186 (287)
..|++++|+|+|....++. .++.. +....+.+ +++.+++++.++++|++
T Consensus 308 T~E~a~lg~P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 308 TEQAVGLGKPVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred HHHHHHhCCCEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHH
Confidence 6999999999999874331 22232 22223444 78999999999998754
No 104
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=1.5e-05 Score=72.32 Aligned_cols=161 Identities=20% Similarity=0.250 Sum_probs=106.2
Q ss_pred ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcC-CeEEEEE-eCCcC
Q 023072 15 YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA-GLEVDLY-GNGED 91 (287)
Q Consensus 15 ~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~-~~~l~i~-G~g~~ 91 (287)
++++++.++ +.|.++++. .+......... ...++|+.+|.= .|...+-+++..+..... +++++.. |...
T Consensus 151 ~~~~~~~~tG~Pvr~~~~~-~~~~~~~~~~~--~~~~~ilV~GGS---~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~- 223 (357)
T COG0707 151 VKPENVVVTGIPVRPEFEE-LPAAEVRKDGR--LDKKTILVTGGS---QGAKALNDLVPEALAKLANRIQVIHQTGKND- 223 (357)
T ss_pred CCCCceEEecCcccHHhhc-cchhhhhhhcc--CCCcEEEEECCc---chhHHHHHHHHHHHHHhhhCeEEEEEcCcch-
Confidence 445678888 999999886 32222111111 122367777732 344444444444433333 4665555 5544
Q ss_pred HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC---------ccccccC
Q 023072 92 FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---------NDFFKQF 162 (287)
Q Consensus 92 ~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~---------~e~i~~~ 162 (287)
.++++....+++. .++.++.++...+|+.||+.|. -+-++|+.|.+++|+|+|--..+. ..++.+.
T Consensus 224 ~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLvIs----RaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~ 298 (357)
T COG0707 224 LEELKSAYNELGV-VRVLPFIDDMAALLAAADLVIS----RAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA 298 (357)
T ss_pred HHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEEEe----CCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC
Confidence 6777776666665 7788999888899999999986 445799999999999999887743 1255555
Q ss_pred CCeEeec----CHHHHHHHHHHHHhCCCC
Q 023072 163 PNCRTYD----DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 163 ~~g~l~~----d~~~l~~~i~~ll~~~~~ 187 (287)
..+.+.+ +++.+.+.|.+++++++.
T Consensus 299 gaa~~i~~~~lt~~~l~~~i~~l~~~~~~ 327 (357)
T COG0707 299 GAALVIRQSELTPEKLAELILRLLSNPEK 327 (357)
T ss_pred CCEEEeccccCCHHHHHHHHHHHhcCHHH
Confidence 5566665 577999999999998544
No 105
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.32 E-value=6.3e-06 Score=72.51 Aligned_cols=96 Identities=10% Similarity=0.167 Sum_probs=73.6
Q ss_pred CcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEE-EEeCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEc
Q 023072 50 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD-LYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 127 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~-i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ 127 (287)
..+++.|..++.+....+++++.++. +++++. |+|.+. ..+++++..+..+ ++++++..++..++|..||++|.
T Consensus 172 ~iLi~~GG~d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~~~~~l~~~~~~~~-~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 172 RVLVSFGGADPDNLTLKLLSALAESQ---INISITLVTGSSNPNLDELKKFAKEYP-NIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred eEEEEeCCcCCcCHHHHHHHHHhccc---cCceEEEEECCCCcCHHHHHHHHHhCC-CEEEEeCHHHHHHHHHHCCEEEE
Confidence 35788888887776778888887652 345544 448764 4677887776654 67788888877799999999998
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+ .|.|+.|++++|+|+|+-...
T Consensus 248 ~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 248 A-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred C-----CchHHHHHHHcCCCEEEEEec
Confidence 4 568999999999999988664
No 106
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=6.2e-05 Score=70.18 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=109.2
Q ss_pred ccCCCCccccCcchHH-----HhhcCCCCC-CCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeCCc--C
Q 023072 24 HGVNPKFLEIGKKKKE-----QQQNGTHAF-AKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE--D 91 (287)
Q Consensus 24 ~gvd~~~~~~~~~~~~-----~~~~~~~~~-~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~--~ 91 (287)
-|+|+..|........ ......... .+.|+-+-|+++-||+..=+.|+.++...+|. +.++-++... +
T Consensus 251 IgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~ 330 (486)
T COG0380 251 IGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSRED 330 (486)
T ss_pred eecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccc
Confidence 8899887754321111 111111111 23466677999999999999999999988874 4455555433 2
Q ss_pred HH-------HHHHHHHh----cCC----ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC----eEE
Q 023072 92 FN-------QIQEAAEK----LKI----VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK----IVV 149 (287)
Q Consensus 92 ~~-------~l~~~~~~----~~l----~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~----PVV 149 (287)
.+ ++++.+.+ +|- .+.++ -..+..+ .+|+.||+++.++..||..++..|+.||-- +.|
T Consensus 331 v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~Li 410 (486)
T COG0380 331 VEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLI 410 (486)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEE
Confidence 12 23333332 221 34443 3456666 999999999999999999999999999854 777
Q ss_pred eecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 150 CANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 150 ~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
-|.-.| ...+.+ .++++ |.++++++|.++|+.+.+
T Consensus 411 LSeFaGaa~~L~~---AliVNP~d~~~va~ai~~AL~m~~e 448 (486)
T COG0380 411 LSEFAGAASELRD---ALIVNPWDTKEVADAIKRALTMSLE 448 (486)
T ss_pred Eeccccchhhhcc---CEeECCCChHHHHHHHHHHhcCCHH
Confidence 787755 444443 57776 999999999999998765
No 107
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=7.5e-05 Score=69.94 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=115.2
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC---HHHHHHHHHhcCC---ceEEecCCCCHH--HHhhhC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED---FNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDY 122 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~---~~~l~~~~~~~~l---~~~v~g~~~~~~--~~~~~a 122 (287)
.++|++--...|-...+++.+.++.+.-|+-.|++.|.|++ ...+++++++.|+ +.+|.+..++++ +.|..|
T Consensus 430 avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iA 509 (620)
T COG3914 430 AVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIA 509 (620)
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchh
Confidence 47777777888999999999999999999999999988776 4568888998887 567778888777 899999
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC------cccccc-CCCeEeecCHHHHHHHHHHHHhCCCC--CccHHH
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQ 193 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~------~e~i~~-~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~ 193 (287)
|+++-+.- -+-.+|..||+-||+|||+--... ..++.+ +..-++..+.++.++.-..+-++... +.+...
T Consensus 510 DlvLDTyP-Y~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l 588 (620)
T COG3914 510 DLVLDTYP-YGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAEL 588 (620)
T ss_pred heeeeccc-CCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHH
Confidence 99987543 445789999999999999864321 123332 12225666888887777776666433 111111
Q ss_pred H------hcCCHHHHHHHHHHHHh
Q 023072 194 R------HQLSWESATERFLQVAE 211 (287)
Q Consensus 194 ~------~~~sw~~~~~~~~~~~~ 211 (287)
+ --|+-+..++++..+|.
T Consensus 589 ~~~r~tspL~d~~~far~le~~y~ 612 (620)
T COG3914 589 KRSRQTSPLFDPKAFARKLETLYW 612 (620)
T ss_pred HhccccCcccCHHHHHHHHHHHHH
Confidence 1 13666777777777776
No 108
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.04 E-value=7e-05 Score=75.21 Aligned_cols=134 Identities=10% Similarity=0.074 Sum_probs=98.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCe----EEEEEeC-----CcCHHHH----HHHHHh----cCC----ceEEe
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGL----EVDLYGN-----GEDFNQI----QEAAEK----LKI----VVRVY 109 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~----~l~i~G~-----g~~~~~l----~~~~~~----~~l----~~~v~ 109 (287)
.|+-+.|++.-||+..=+.|++++.+.+|++ .|+-+.. +++..++ .+++.+ ++- .++++
T Consensus 341 ~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~ 420 (854)
T PLN02205 341 MLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLI 420 (854)
T ss_pred EEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Confidence 5666779999999999999999999998865 4554443 2233333 333333 221 34444
Q ss_pred -cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC-------------------eEEeecCCC-ccccccCCCeE
Q 023072 110 -PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-------------------IVVCANHPS-NDFFKQFPNCR 166 (287)
Q Consensus 110 -g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~-------------------PVV~s~~~~-~e~i~~~~~g~ 166 (287)
..++..+ .+|+.||+++.++..+|+.++..|+.+|.. .+|.|.-.| ...+. ..+
T Consensus 421 ~~~~~~~e~~aly~~ADv~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L~---~Ai 497 (854)
T PLN02205 421 DAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSLS---GAI 497 (854)
T ss_pred ecCCCHHHHHHHHHhccEEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHhC---cCe
Confidence 5567666 999999999999999999999999999964 266666644 33432 356
Q ss_pred eec--CHHHHHHHHHHHHhCCCC
Q 023072 167 TYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 167 l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
+++ |.++++++|.++|+.+..
T Consensus 498 ~VNP~d~~~~a~ai~~AL~m~~~ 520 (854)
T PLN02205 498 RVNPWNIDAVADAMDSALEMAEP 520 (854)
T ss_pred EECCCCHHHHHHHHHHHHcCCHH
Confidence 776 999999999999998765
No 109
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.03 E-value=0.00013 Score=66.79 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=66.5
Q ss_pred ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec-CHHHHHHHHHH
Q 023072 105 VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLK 180 (287)
Q Consensus 105 ~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ 180 (287)
++++++..++.+ .+++.|+++|-- + +..+-||.++|+|||.- +. .+.+..+.+.+++. |++++.+++.+
T Consensus 263 ~v~l~~~l~~~~~l~Ll~~a~~vitd----S-Sggi~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~vg~~~~~I~~a~~~ 335 (365)
T TIGR03568 263 NFRLFKSLGQERYLSLLKNADAVIGN----S-SSGIIEAPSFGVPTINI--GTRQKGRLRADSVIDVDPDKEEIVKAIEK 335 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCEEEEc----C-hhHHHhhhhcCCCEEee--cCCchhhhhcCeEEEeCCCHHHHHHHHHH
Confidence 577789888888 999999999832 2 23348999999999954 45 66666677777677 99999999999
Q ss_pred HHhCCCC-CccHHHHhcCCHHHHHHHHHHH
Q 023072 181 ALAEEPA-LPTEAQRHQLSWESATERFLQV 209 (287)
Q Consensus 181 ll~~~~~-~~~~~~~~~~sw~~~~~~~~~~ 209 (287)
+++. .. ........-|...+..+++.++
T Consensus 336 ~~~~-~~~~~~~~~~~pygdg~as~rI~~~ 364 (365)
T TIGR03568 336 LLDP-AFKKSLKNVKNPYGDGNSSERIIEI 364 (365)
T ss_pred HhCh-HHHHHHhhCCCCCCCChHHHHHHHh
Confidence 5432 11 0001111236666666666553
No 110
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.02 E-value=0.00019 Score=65.24 Aligned_cols=182 Identities=10% Similarity=0.056 Sum_probs=99.8
Q ss_pred hhccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHH-HHHHHHHHHhcCCeEEEEE-eCC
Q 023072 13 QEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKEL-LELLDDHQKELAGLEVDLY-GNG 89 (287)
Q Consensus 13 ~~~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~l-l~a~~~l~~~~~~~~l~i~-G~g 89 (287)
..++++++.++ +.|.+++........ ....+.....+.|+.+|.=.-.+.+..+ .+++..+. .++++++. |..
T Consensus 149 ~~~~~~k~~~tG~Pvr~~~~~~~~~~~-~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~---~~~~vv~~~G~~ 224 (352)
T PRK12446 149 KHLPKEKVIYTGSPVREEVLKGNREKG-LAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL---LKYQIVHLCGKG 224 (352)
T ss_pred hhCCCCCeEEECCcCCcccccccchHH-HHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc---cCcEEEEEeCCc
Confidence 34566788888 999988764332111 1111111112356665532223344332 23343332 24665554 653
Q ss_pred cCHHHHHHHHHhcCCceEEecCC-CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC-----C-----ccc
Q 023072 90 EDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP-----S-----NDF 158 (287)
Q Consensus 90 ~~~~~l~~~~~~~~l~~~v~g~~-~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~-----~-----~e~ 158 (287)
. .+... ..+. +..+++.. ++..++|..||++|. -+-++++.|++++|+|+|....+ + ...
T Consensus 225 ~-~~~~~---~~~~-~~~~~~f~~~~m~~~~~~adlvIs----r~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~ 295 (352)
T PRK12446 225 N-LDDSL---QNKE-GYRQFEYVHGELPDILAITDFVIS----RAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAES 295 (352)
T ss_pred h-HHHHH---hhcC-CcEEecchhhhHHHHHHhCCEEEE----CCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHH
Confidence 2 23222 1122 33456666 456689999999876 45579999999999999988542 2 224
Q ss_pred cccCCCeEeec----CHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHH
Q 023072 159 FKQFPNCRTYD----DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV 209 (287)
Q Consensus 159 i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~ 209 (287)
+.+...+.... +++.+.+++.++++|++. +. ...+.+...+.++++.+.
T Consensus 296 l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~-~~-~~~~~~~~~~aa~~i~~~ 348 (352)
T PRK12446 296 FERQGYASVLYEEDVTVNSLIKHVEELSHNNEK-YK-TALKKYNGKEAIQTIIDH 348 (352)
T ss_pred HHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHH-HH-HHHHHcCCCCHHHHHHHH
Confidence 44433443332 789999999999876432 21 222334444445544443
No 111
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.86 E-value=0.00042 Score=63.81 Aligned_cols=97 Identities=21% Similarity=0.171 Sum_probs=65.3
Q ss_pred eEEE-EEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-c--
Q 023072 81 LEVD-LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-N-- 156 (287)
Q Consensus 81 ~~l~-i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~-- 156 (287)
++++ ..|.+.+...+. ....++.+.+.+++. +++..||++|..+ | ..+++|||++|+|+|+....+ .
T Consensus 255 ~~~i~~~g~~~~~~~~~----~~~~~v~~~~~~p~~-~ll~~~~~~I~hg---G-~~t~~Eal~~G~P~v~~p~~~dq~~ 325 (392)
T TIGR01426 255 WHVVLSVGRGVDPADLG----ELPPNVEVRQWVPQL-EILKKADAFITHG---G-MNSTMEALFNGVPMVAVPQGADQPM 325 (392)
T ss_pred CeEEEEECCCCChhHhc----cCCCCeEEeCCCCHH-HHHhhCCEEEECC---C-chHHHHHHHhCCCEEecCCcccHHH
Confidence 4444 447665533332 233466777887765 5999999998643 2 358999999999999987644 2
Q ss_pred --cccccCCCeEeec----CHHHHHHHHHHHHhCCC
Q 023072 157 --DFFKQFPNCRTYD----DRNGFVEATLKALAEEP 186 (287)
Q Consensus 157 --e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~ 186 (287)
..+.+...|.... +.++++++|.++++++.
T Consensus 326 ~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~ 361 (392)
T TIGR01426 326 TARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPR 361 (392)
T ss_pred HHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHH
Confidence 2333433454432 78999999999998753
No 112
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.56 E-value=0.00053 Score=63.20 Aligned_cols=117 Identities=19% Similarity=0.061 Sum_probs=74.1
Q ss_pred EEEEEeccc---ccCHHHHHHHHHHHHHhcCCeEEE-EEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEc
Q 023072 52 AYYIGKMVW---SKGYKELLELLDDHQKELAGLEVD-LYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 127 (287)
Q Consensus 52 i~~vG~~~~---~Kg~~~ll~a~~~l~~~~~~~~l~-i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ 127 (287)
++..|.... .+-+..+++++..+ +.+++ .+|...... ....-++.+.+..++. .+|..||++|.
T Consensus 243 ~v~~Gs~~~~~~~~~~~~~~~a~~~~-----~~~~i~~~g~~~~~~------~~~~~~v~~~~~~p~~-~ll~~~d~~I~ 310 (401)
T cd03784 243 YVGFGSMVVRDPEALARLDVEAVATL-----GQRAILSLGWGGLGA------EDLPDNVRVVDFVPHD-WLLPRCAAVVH 310 (401)
T ss_pred EEeCCCCcccCHHHHHHHHHHHHHHc-----CCeEEEEccCccccc------cCCCCceEEeCCCCHH-HHhhhhheeee
Confidence 445666543 23344445555432 34444 446544321 2233467777887755 48999999983
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAE 184 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~ 184 (287)
.+-..++.||+++|+|+|.....+ ...+.....|...+ +.+++.+++.+++++
T Consensus 311 ----hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~ 372 (401)
T cd03784 311 ----HGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP 372 (401)
T ss_pred ----cCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH
Confidence 444689999999999999997754 22333433454432 789999999999885
No 113
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.47 E-value=0.0063 Score=55.55 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=95.6
Q ss_pred CcEEEEEecccccCHH-HHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEe--cC--CCC---------
Q 023072 50 KGAYYIGKMVWSKGYK-ELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY--PG--RDH--------- 114 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~-~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~--g~--~~~--------- 114 (287)
+.+++.|. ..|=+ .+++++..+.+.+||+.++++=..++ .+.+.+++++.|+..... +. ..+
T Consensus 232 ~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm 308 (419)
T COG1519 232 PVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM 308 (419)
T ss_pred ceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH
Confidence 35666766 34444 47899999999999999999966665 677888999888764443 21 111
Q ss_pred HH--HHhhhCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCC--cc---ccccCCCeEeecCHHHHHHHHHHHHhCC
Q 023072 115 AD--LIFHDYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPS--ND---FFKQFPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 115 ~~--~~~~~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~--~e---~i~~~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
.+ .+|..+|+.+. -|..+--|-=++|++++|+|||.-..-- .+ .+.+...|+.++|.+.+..++..+++++
T Consensus 309 GEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~~~ 387 (419)
T COG1519 309 GELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVEDADLLAKAVELLLADE 387 (419)
T ss_pred hHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEECCHHHHHHHHHHhcCCH
Confidence 12 88999999555 5666666778999999999999987732 33 3444456788999777777777777763
No 114
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.30 E-value=0.0022 Score=57.05 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=73.3
Q ss_pred CcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC-CCHHHHhhhCCEEEcC
Q 023072 50 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNP 128 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~-~~~~~~~~~adv~v~p 128 (287)
..++|+|..... .++++++.+ ++..++++|.... +....++++++.. ++..++|..||++|.-
T Consensus 194 ~iLv~~gg~~~~----~~~~~l~~~----~~~~~~v~g~~~~--------~~~~~ni~~~~~~~~~~~~~m~~ad~vIs~ 257 (318)
T PF13528_consen 194 KILVYFGGGGPG----DLIEALKAL----PDYQFIVFGPNAA--------DPRPGNIHVRPFSTPDFAELMAAADLVISK 257 (318)
T ss_pred EEEEEeCCCcHH----HHHHHHHhC----CCCeEEEEcCCcc--------cccCCCEEEeecChHHHHHHHHhCCEEEEC
Confidence 368888876555 556666543 6788999977531 1113467776654 4444899999999874
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecCCC-cc------ccccCCCeEeec----CHHHHHHHHHH
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANHPS-ND------FFKQFPNCRTYD----DRNGFVEATLK 180 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~~~-~e------~i~~~~~g~l~~----d~~~l~~~i~~ 180 (287)
+--.++.||+++|+|+|+-...+ .| .+.....|...+ +++.|.++|.+
T Consensus 258 ----~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 258 ----GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLER 316 (318)
T ss_pred ----CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhc
Confidence 22355999999999999998854 22 333333343332 77787777765
No 115
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.27 E-value=0.0021 Score=58.33 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=78.6
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHH
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTT 137 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~ 137 (287)
.....+.+++..+.+. +++.+++.....+ ...+.+...++. +++++..+.+.+ .+++.|++.|--| | .
T Consensus 197 ~~~~~i~~~l~~L~~~-~~~~vi~~~hn~p~~~~~i~~~l~~~~-~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-G 268 (346)
T PF02350_consen 197 ERLEQILEALKALAER-QNVPVIFPLHNNPRGSDIIIEKLKKYD-NVRLIEPLGYEEYLSLLKNADLVVGDS-----S-G 268 (346)
T ss_dssp --HHHHHHHHHHHHHH-TTEEEEEE--S-HHHHHHHHHHHTT-T-TEEEE----HHHHHHHHHHESEEEESS-----H-H
T ss_pred HHHHHHHHHHHHHHhc-CCCcEEEEecCCchHHHHHHHHhcccC-CEEEECCCCHHHHHHHHhcceEEEEcC-----c-c
Confidence 4567888888888877 7888888866332 456666677774 888888888888 9999999996532 4 6
Q ss_pred HH-HHHhcCCeEEeecCCC--ccccccCCCeEeec-CHHHHHHHHHHHHhC
Q 023072 138 TA-EALAMGKIVVCANHPS--NDFFKQFPNCRTYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 138 ~~-EAma~G~PVV~s~~~~--~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~ 184 (287)
+. ||.++|+|||.-...+ .+....+.+-+ +. |.+++.+++.+++++
T Consensus 269 I~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl-v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 269 IQEEAPSLGKPVVNIRDSGERQEGRERGSNVL-VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-ETSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-eCCCHHHHHHHHHHHHhC
Confidence 77 9999999999996644 56666655556 66 999999999999986
No 116
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00027 Score=64.37 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=64.8
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCC-Ce-Eeec--------CHHHHHHHHHHH
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFP-NC-RTYD--------DRNGFVEATLKA 181 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~-~g-~l~~--------d~~~l~~~i~~l 181 (287)
++.+.|.+.|+||++|++|.+-.|.-.||+|-|+|+..| .|.|.+.. .| ++++ +.+++++-+...
T Consensus 496 eFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F 575 (692)
T KOG3742|consen 496 EFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEF 575 (692)
T ss_pred HHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999976 45555542 34 4543 444555555554
Q ss_pred HhCCCC-Ccc-----HHHHhcCCHHHHHHHHHHHHhc
Q 023072 182 LAEEPA-LPT-----EAQRHQLSWESATERFLQVAEL 212 (287)
Q Consensus 182 l~~~~~-~~~-----~~~~~~~sw~~~~~~~~~~~~~ 212 (287)
...... +.- +....-.+|..+...|.+.=.+
T Consensus 576 ~~qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~~aR~l 612 (692)
T KOG3742|consen 576 CKQSRRQRIIQRNRTERLSDLLDWKYLGRYYRKARHL 612 (692)
T ss_pred HHHHHHHHHHHhcchhhHHHHHhHHHHhHHHHHHHHH
Confidence 443222 110 1111357888877766654443
No 117
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.91 E-value=0.0092 Score=54.52 Aligned_cols=96 Identities=19% Similarity=0.057 Sum_probs=68.5
Q ss_pred EEEE-ecc-cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHH-HHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 53 YYIG-KMV-WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFN-QIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 53 ~~vG-~~~-~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~-~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
++-| |-. -.+.+..+++++..+.+.+|++++++........ .+.+.....+..+.+.-...+..+.|+.||+.+..|
T Consensus 189 LLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~al~~S 268 (373)
T PF02684_consen 189 LLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAMAAADAALAAS 268 (373)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcchhhcC
Confidence 4445 433 3357789999999999999999999886544433 355666665554444322233337999999998865
Q ss_pred CCCcchHHHHHHHhcCCeEEeecC
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
|++.+|++.+|+|.|..--
T Consensus 269 -----GTaTLE~Al~g~P~Vv~Yk 287 (373)
T PF02684_consen 269 -----GTATLEAALLGVPMVVAYK 287 (373)
T ss_pred -----CHHHHHHHHhCCCEEEEEc
Confidence 8999999999999877654
No 118
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=96.79 E-value=0.16 Score=48.56 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=57.6
Q ss_pred cCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----C
Q 023072 102 LKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----D 170 (287)
Q Consensus 102 ~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d 170 (287)
.+-++.+.+..++.+ ++. .+++||. .|-..++.||+.+|+|+|+-..-+ ..-+.....|...+ +
T Consensus 344 ~p~Nv~i~~w~Pq~~-lL~hp~v~~fIt----HGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t 418 (507)
T PHA03392 344 LPANVLTQKWFPQRA-VLKHKNVKAFVT----QGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVS 418 (507)
T ss_pred CCCceEEecCCCHHH-HhcCCCCCEEEe----cCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcC
Confidence 344667778888766 774 5788864 555788999999999999988844 22333333454443 8
Q ss_pred HHHHHHHHHHHHhCCC
Q 023072 171 RNGFVEATLKALAEEP 186 (287)
Q Consensus 171 ~~~l~~~i~~ll~~~~ 186 (287)
.+++.++|.++++++.
T Consensus 419 ~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 419 AAQLVLAIVDVIENPK 434 (507)
T ss_pred HHHHHHHHHHHhCCHH
Confidence 8999999999998743
No 119
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.014 Score=52.51 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=105.9
Q ss_pred cEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcC-CeEEEEEeCCcCHHHHH
Q 023072 19 IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELA-GLEVDLYGNGEDFNQIQ 96 (287)
Q Consensus 19 ~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~-~~~l~i~G~g~~~~~l~ 96 (287)
+..-+ .++|++.|.+-+... .+.-.+.++|+..+. -++.+-+.+.+-..... +-.+...|.......+.
T Consensus 162 ~~~~~~~a~d~~~~~~i~~da--------~~~~dL~~ign~~pD-r~e~~ke~~~~ps~kl~v~rr~~~~g~~y~~~~~~ 232 (373)
T COG4641 162 NCYYLPWAVDDSLFHPIPPDA--------SYDVDLNLIGNPYPD-RVEEIKEFFVEPSFKLMVDRRFYVLGPRYPDDIWG 232 (373)
T ss_pred ceeccCccCCchhcccCCccc--------cceeeeEEecCCCcc-HHHHHHHHhhccchhhhccceeeecCCccchhhhc
Confidence 34444 778877776654322 111258899976554 22222222221111111 23455566652111111
Q ss_pred HHHHhcCCceEEecCCCC-HH--HHhhhCCEEEcCCCC---Cc---chHHHHHHHhcCCeEEeecCCC-ccccccCCCeE
Q 023072 97 EAAEKLKIVVRVYPGRDH-AD--LIFHDYKVFLNPSTT---DV---VCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCR 166 (287)
Q Consensus 97 ~~~~~~~l~~~v~g~~~~-~~--~~~~~adv~v~ps~~---E~---~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~ 166 (287)
. . ...++...|.... .. ..++..++.++-++. ++ +.+-+.|+|+||.|.|++...+ .-++.++..-.
T Consensus 233 ~-~--~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~i 309 (373)
T COG4641 233 R-T--WEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDII 309 (373)
T ss_pred c-c--ccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheE
Confidence 1 0 1113334455544 22 677788888876553 33 3788999999999999998887 67888887778
Q ss_pred eecCHHHHHHHHHHHHhCCCC--CccHH----HHhcCCHHHHHHHHHHHHh
Q 023072 167 TYDDRNGFVEATLKALAEEPA--LPTEA----QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 167 l~~d~~~l~~~i~~ll~~~~~--~~~~~----~~~~~sw~~~~~~~~~~~~ 211 (287)
++.|..++.+.+..++..+.+ ++.+. ....|+.+.-...+++...
T Consensus 310 v~~d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~~i~ 360 (373)
T COG4641 310 VYQDSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLNEIA 360 (373)
T ss_pred EecCHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence 888999999999999999865 33331 2234666555555544444
No 120
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=96.53 E-value=0.047 Score=50.69 Aligned_cols=125 Identities=15% Similarity=0.127 Sum_probs=79.3
Q ss_pred CcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 50 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
+.++|++--...-+ ..+++.+....... +.++++...+.+ .. ......++.+.+..++.+ ++..||++|.
T Consensus 237 ~~~vyvslGt~~~~-~~l~~~~~~a~~~l-~~~vi~~~~~~~-~~----~~~~p~n~~v~~~~p~~~-~l~~ad~vI~-- 306 (406)
T COG1819 237 RPIVYVSLGTVGNA-VELLAIVLEALADL-DVRVIVSLGGAR-DT----LVNVPDNVIVADYVPQLE-LLPRADAVIH-- 306 (406)
T ss_pred CCeEEEEcCCcccH-HHHHHHHHHHHhcC-CcEEEEeccccc-cc----cccCCCceEEecCCCHHH-HhhhcCEEEe--
Confidence 34666653222211 55555544444432 566777643322 11 122344666667787777 9999999986
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCC
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 186 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~ 186 (287)
-|-..++.||+..|+|+|.-..+. .+-+..-..|...+ +.+.+++++.++++++.
T Consensus 307 --hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~ 370 (406)
T COG1819 307 --HGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDS 370 (406)
T ss_pred --cCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHH
Confidence 345678999999999999988754 23344444553322 99999999999999854
No 121
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=96.45 E-value=0.00041 Score=55.98 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=63.8
Q ss_pred CeEEEEE-eCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC---
Q 023072 80 GLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS--- 155 (287)
Q Consensus 80 ~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~--- 155 (287)
++++++. |.... +.........+.++.++++.++..++|..||+.|. -+-+.|+.|++++|+|.|.-..+.
T Consensus 31 ~~~viv~~G~~~~-~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~~~ 105 (167)
T PF04101_consen 31 NIQVIVQTGKNNY-EELKIKVENFNPNVKVFGFVDNMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGAAD 105 (167)
T ss_dssp HCCCCCCCTTCEC-HHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT-T
T ss_pred CcEEEEEECCCcH-HHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCcch
Confidence 3455554 76643 33332234444578888999888899999999876 344589999999999988765533
Q ss_pred ------ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC
Q 023072 156 ------NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 156 ------~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~ 187 (287)
...+.+...+..+. +++.+.++|..+++++..
T Consensus 106 ~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~ 147 (167)
T PF04101_consen 106 NHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEK 147 (167)
T ss_dssp -CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-
T ss_pred HHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHH
Confidence 11233322333322 577899999998887654
No 122
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.39 E-value=0.092 Score=49.94 Aligned_cols=124 Identities=18% Similarity=0.086 Sum_probs=71.0
Q ss_pred CcEEEEE--ecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEc
Q 023072 50 KGAYYIG--KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 127 (287)
Q Consensus 50 ~~i~~vG--~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ 127 (287)
+.++|++ .+.. .-.+..++.+.+..++.|. +++..-.+.....+ +.++.+....++.+ +++...+-++
T Consensus 276 ~~vv~vsfGs~~~-~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-------~~n~~~~~W~PQ~~-lL~hp~v~~f 345 (500)
T PF00201_consen 276 KGVVYVSFGSIVS-SMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-------PKNVLIVKWLPQND-LLAHPRVKLF 345 (500)
T ss_dssp TEEEEEE-TSSST-T-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-------HTTEEEESS--HHH-HHTSTTEEEE
T ss_pred CCEEEEecCcccc-hhHHHHHHHHHHHHhhCCC-cccccccccccccc-------cceEEEeccccchh-hhhcccceee
Confidence 3566654 5432 2334434444444445565 66666444222222 22667778888766 8876655433
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 185 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~ 185 (287)
.+-|--.++.||+.+|+|+|+-..-+ ...+.+...|...+ +.+++.++|.++++|+
T Consensus 346 --itHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~ 410 (500)
T PF00201_consen 346 --ITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENP 410 (500)
T ss_dssp --EES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSH
T ss_pred --eeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhh
Confidence 23555788999999999999998843 22334434555443 8899999999999984
No 123
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=96.35 E-value=0.37 Score=42.66 Aligned_cols=155 Identities=13% Similarity=0.061 Sum_probs=99.9
Q ss_pred cEEEEE-ecccccCHHHHHHHHHHHHHhcCCeEEEEE-eC--CcC--HHHHHHHHHhcCC--ceEEe-cCCCCHH--HHh
Q 023072 51 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY-GN--GED--FNQIQEAAEKLKI--VVRVY-PGRDHAD--LIF 119 (287)
Q Consensus 51 ~i~~vG-~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~--g~~--~~~l~~~~~~~~l--~~~v~-g~~~~~~--~~~ 119 (287)
..+-+| .-++.-++.++++++.+.. ..++++++- |- |++ .+++.+...++-. ++.++ ..++-.+ +++
T Consensus 147 ~tIlvGNSgd~SN~Hie~L~~l~~~~--~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL 224 (322)
T PRK02797 147 MTILVGNSGDRSNRHIEALRALHQQF--GDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALL 224 (322)
T ss_pred eEEEEeCCCCCcccHHHHHHHHHHHh--CCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHH
Confidence 456677 4677788989999987774 347888877 55 332 3445555555433 55554 5566666 999
Q ss_pred hhCCEEEcCCC-CCcchHHHHHHHhcCCeEEeecC-CC-ccccccCCCeEeec---CHHHHHHHHHHHHhCCCCCccHHH
Q 023072 120 HDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANH-PS-NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPALPTEAQ 193 (287)
Q Consensus 120 ~~adv~v~ps~-~E~~~~~~~EAma~G~PVV~s~~-~~-~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~~~~~~~~~~ 193 (287)
+.||+.++.-. -++.|+.+ =.+.+|+||+.+.. +- .++...+..-+... |...+.++=+++........
T Consensus 225 ~~~Dl~~f~~~RQQgiGnl~-lLi~~G~~v~l~r~n~fwqdl~e~gv~Vlf~~d~L~~~~v~e~~rql~~~dk~~I---- 299 (322)
T PRK02797 225 RQCDLGYFIFARQQGIGTLC-LLIQLGKPVVLSRDNPFWQDLTEQGLPVLFTGDDLDEDIVREAQRQLASVDKNII---- 299 (322)
T ss_pred HhCCEEEEeechhhHHhHHH-HHHHCCCcEEEecCCchHHHHHhCCCeEEecCCcccHHHHHHHHHHHHhhCccee----
Confidence 99999887654 47877654 58899999999976 44 56555432222222 55555555444444322222
Q ss_pred HhcCCHHHHHHHHHHHHhccc
Q 023072 194 RHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 194 ~~~~sw~~~~~~~~~~~~~~~ 214 (287)
.|+-++..+.|.++++.+.
T Consensus 300 --~Ff~pn~~~~W~~~l~~~~ 318 (322)
T PRK02797 300 --AFFSPNYLQGWRNALAIAA 318 (322)
T ss_pred --eecCHhHHHHHHHHHHHhh
Confidence 2888889999999888654
No 124
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.17 E-value=0.044 Score=49.03 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=65.6
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCC-CHHHHhhhCCEEEcCCCCCcchHHHHH
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-HADLIFHDYKVFLNPSTTDVVCTTTAE 140 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~-~~~~~~~~adv~v~ps~~E~~~~~~~E 140 (287)
.+...+++++.++ +++.+++ |...... ..+..++.+++..+ +..++|..||++|.-+- ..++.|
T Consensus 198 ~~~~~l~~~l~~~----~~~~~i~-~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G----~~t~~E 262 (321)
T TIGR00661 198 EYRYKILELLGKI----ANVKFVC-YSYEVAK------NSYNENVEIRRITTDNFKELIKNAELVITHGG----FSLISE 262 (321)
T ss_pred CCHHHHHHHHHhC----CCeEEEE-eCCCCCc------cccCCCEEEEECChHHHHHHHHhCCEEEECCC----hHHHHH
Confidence 3556666666443 4555443 4322111 12333667776654 33489999999998542 246999
Q ss_pred HHhcCCeEEeecCCC-cc------ccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 141 ALAMGKIVVCANHPS-ND------FFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 141 Ama~G~PVV~s~~~~-~e------~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
|+++|+|+|....++ .| .+.+...|...+ +. ++.+++...++++.
T Consensus 263 a~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 263 ALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL-RLLEAILDIRNMKR 316 (321)
T ss_pred HHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH-HHHHHHHhcccccc
Confidence 999999999998865 23 344433454444 44 66666666665544
No 125
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.16 Score=46.19 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=84.2
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHH-HhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchH
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA-EKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCT 136 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~-~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~ 136 (287)
+++..+++++.++.+.++++.++.-=. +. ..+++.. ..++. ++.++..++..+ .++..|.+.+-=| |.
T Consensus 219 ~~~~~i~~al~~i~~~~~~~~viyp~H-~~-~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----Gg 291 (383)
T COG0381 219 EPLEEICEALREIAEEYPDVIVIYPVH-PR-PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GG 291 (383)
T ss_pred ccHHHHHHHHHHHHHhCCCceEEEeCC-CC-hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----Cc
Confidence 899999999999999887775554433 32 4555544 44544 366678888877 7788885554322 55
Q ss_pred HHHHHHhcCCeEEeecCCC--ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC
Q 023072 137 TTAEALAMGKIVVCANHPS--NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~--~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~ 187 (287)
-.=||-..|+||++-.... .|-+..+ +-.++. +.+.+.+++..+++++..
T Consensus 292 iqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~~lvg~~~~~i~~~~~~ll~~~~~ 344 (383)
T COG0381 292 IQEEAPSLGKPVLVLRDTTERPEGVEAG-TNILVGTDEENILDAATELLEDEEF 344 (383)
T ss_pred hhhhHHhcCCcEEeeccCCCCccceecC-ceEEeCccHHHHHHHHHHHhhChHH
Confidence 5679999999999998865 5555443 345555 999999999999998654
No 126
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.045 Score=49.55 Aligned_cols=96 Identities=18% Similarity=0.091 Sum_probs=64.5
Q ss_pred EEEEE-ec-ccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHH-HHhcCCceEEecCCCCH-HHHhhhCCEEEc
Q 023072 52 AYYIG-KM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEA-AEKLKIVVRVYPGRDHA-DLIFHDYKVFLN 127 (287)
Q Consensus 52 i~~vG-~~-~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~-~~~~~l~~~v~g~~~~~-~~~~~~adv~v~ 127 (287)
.+.-| |- +-.+....+++++..+..++|+.++++--.....+.+... .+........+ -.+.. .+.+..||+.+.
T Consensus 192 alLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~aD~al~ 270 (381)
T COG0763 192 ALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLI-LIDGEKRKAFAAADAALA 270 (381)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEE-ecCchHHHHHHHhhHHHH
Confidence 44555 32 2336788889999999999999999998765554444433 33332111222 11222 278999999877
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.| |++.+|+|.+|+|+|.+=-
T Consensus 271 aS-----GT~tLE~aL~g~P~Vv~Yk 291 (381)
T COG0763 271 AS-----GTATLEAALAGTPMVVAYK 291 (381)
T ss_pred hc-----cHHHHHHHHhCCCEEEEEe
Confidence 65 8999999999999887643
No 127
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=95.17 E-value=1.4 Score=41.57 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=51.9
Q ss_pred ceEEecCCCCHHHHhhhCCE--EEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEeec---CHHH
Q 023072 105 VVRVYPGRDHADLIFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD---DRNG 173 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv--~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~~---d~~~ 173 (287)
+..+.+..++.+ ++...++ ||. .+--.+++||+++|+|+|+-..-+ ...+.+. ..|+.+. +.++
T Consensus 325 ~g~v~~w~PQ~~-iL~h~~v~~fvt----H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 399 (451)
T PLN02410 325 RGYIVKWAPQKE-VLSHPAVGGFWS----HCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDRGA 399 (451)
T ss_pred CeEEEccCCHHH-HhCCCccCeeee----cCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccHHH
Confidence 455567777666 7777555 542 344468999999999999987744 2222222 3554442 8899
Q ss_pred HHHHHHHHHhCC
Q 023072 174 FVEATLKALAEE 185 (287)
Q Consensus 174 l~~~i~~ll~~~ 185 (287)
+++++++++.++
T Consensus 400 v~~av~~lm~~~ 411 (451)
T PLN02410 400 VERAVKRLMVEE 411 (451)
T ss_pred HHHHHHHHHcCC
Confidence 999999999764
No 128
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=94.91 E-value=1.3 Score=39.85 Aligned_cols=152 Identities=14% Similarity=0.077 Sum_probs=96.2
Q ss_pred cEEEEE-ecccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcC----HHHHHHHHHhc-CC-ceEEe-cCCCCHH--HHh
Q 023072 51 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY-GNGED----FNQIQEAAEKL-KI-VVRVY-PGRDHAD--LIF 119 (287)
Q Consensus 51 ~i~~vG-~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~----~~~l~~~~~~~-~l-~~~v~-g~~~~~~--~~~ 119 (287)
.-+.+| .-++.-++.++++++.+.. ..++++++- |.|.. .+++.+.++++ +. ++.++ ..++-.| +++
T Consensus 186 ltILvGNSgd~sNnHieaL~~L~~~~--~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL 263 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHIEALEALKQQF--GDDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALL 263 (360)
T ss_pred eEEEEcCCCCCCccHHHHHHHHHHhc--CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHH
Confidence 456677 4677788988888887643 346787776 66542 34455555554 32 45554 5677777 999
Q ss_pred hhCCEEEcCCCC-CcchHHHHHHHhcCCeEEeecCCC--ccccccCCCeEee--c--CHHHHHHHHHHHHhCCCCCccHH
Q 023072 120 HDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPNCRTY--D--DRNGFVEATLKALAEEPALPTEA 192 (287)
Q Consensus 120 ~~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~~~~--~e~i~~~~~g~l~--~--d~~~l~~~i~~ll~~~~~~~~~~ 192 (287)
+.||+.++.... .+.|+ ++=.+.+|+||+.+.... .++...+ --+++ + |.+.+.++=+.+..-+.....
T Consensus 264 ~~cDl~if~~~RQQgiGn-I~lLl~~G~~v~L~~~np~~~~l~~~~-ipVlf~~d~L~~~~v~ea~rql~~~dk~~ia-- 339 (360)
T PF07429_consen 264 SRCDLGIFNHNRQQGIGN-ICLLLQLGKKVFLSRDNPFWQDLKEQG-IPVLFYGDELDEALVREAQRQLANVDKQQIA-- 339 (360)
T ss_pred HhCCEEEEeechhhhHhH-HHHHHHcCCeEEEecCChHHHHHHhCC-CeEEeccccCCHHHHHHHHHHHhhCccccee--
Confidence 999999998765 77775 455899999999998854 4444442 22333 2 777777776666554333221
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 023072 193 QRHQLSWESATERFLQVAEL 212 (287)
Q Consensus 193 ~~~~~sw~~~~~~~~~~~~~ 212 (287)
|.-.+..+.|..+..+
T Consensus 340 ----Ff~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 340 ----FFAPNYLQGWRQALRL 355 (360)
T ss_pred ----eeCCchHHHHHHHHHH
Confidence 3334445555554443
No 129
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.80 E-value=0.18 Score=36.79 Aligned_cols=73 Identities=10% Similarity=0.064 Sum_probs=52.9
Q ss_pred EEEEeC-CcCHHHHHHHHHhcCCceEEe---cCCCCH----HHHhhhCCEEEcCCCC---CcchHHHHHHHhcCCeEEee
Q 023072 83 VDLYGN-GEDFNQIQEAAEKLKIVVRVY---PGRDHA----DLIFHDYKVFLNPSTT---DVVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 83 l~i~G~-g~~~~~l~~~~~~~~l~~~v~---g~~~~~----~~~~~~adv~v~ps~~---E~~~~~~~EAma~G~PVV~s 151 (287)
++|+|. ......+++.++++|....++ ++.... +..+..+|+.|+++-+ ...-.+--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567776 344688999999999988888 443322 2677888999887654 33444556778889999999
Q ss_pred cCCC
Q 023072 152 NHPS 155 (287)
Q Consensus 152 ~~~~ 155 (287)
+..+
T Consensus 82 ~~~~ 85 (97)
T PF10087_consen 82 RSRG 85 (97)
T ss_pred CCCC
Confidence 8655
No 130
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=94.45 E-value=0.32 Score=44.35 Aligned_cols=177 Identities=10% Similarity=0.021 Sum_probs=82.0
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchH-H-HhhcCCCCCCCcEEEEEecccccCH------H
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKK-E-QQQNGTHAFAKGAYYIGKMVWSKGY------K 65 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~-~-~~~~~~~~~~~~i~~vG~~~~~Kg~------~ 65 (287)
+|.+++-|+.... ++.+++.+. ..-...++....... . ....+.....+.|+|.=.+...... .
T Consensus 135 ~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~~~~~~ 214 (369)
T PF04464_consen 135 YDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEYFKFFF 214 (369)
T ss_dssp -SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GGSS---
T ss_pred CcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeeccccccccccccccc
Confidence 5788899988764 344555555 322223333322221 1 1111222223478888654333222 1
Q ss_pred HH--HHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh
Q 023072 66 EL--LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 143 (287)
Q Consensus 66 ~l--l~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma 143 (287)
.. ++.+. .....++.+++-............ .....++.......+..+++..||++|- -++..+.|++.
T Consensus 215 ~~~~~~~l~--~~~~~~~~li~k~Hp~~~~~~~~~-~~~~~~i~~~~~~~~~~~ll~~aDiLIT-----DySSi~fD~~~ 286 (369)
T PF04464_consen 215 SDLDFEKLN--FLLKNNYVLIIKPHPNMKKKFKDF-KEDNSNIIFVSDNEDIYDLLAAADILIT-----DYSSIIFDFLL 286 (369)
T ss_dssp -TT-HHHHH--HHHTTTEEEEE--SHHHHTT-----TT-TTTEEE-TT-S-HHHHHHT-SEEEE-----SS-THHHHHGG
T ss_pred cccCHHHHH--HHhCCCcEEEEEeCchhhhchhhh-hccCCcEEECCCCCCHHHHHHhcCEEEE-----echhHHHHHHH
Confidence 12 22232 223457877777763322222211 1122244344444444489999999974 35779999999
Q ss_pred cCCeEEeec--CCC----ccc---cccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 144 MGKIVVCAN--HPS----NDF---FKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 144 ~G~PVV~s~--~~~----~e~---i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
+++|||... ... +.+ +.+..-|-++.+.++|.++|..++.++.
T Consensus 287 l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~~~~~~~~ 338 (369)
T PF04464_consen 287 LNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIENIIENPD 338 (369)
T ss_dssp GT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHTTHHHHHH
T ss_pred hCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHHhhhhCCH
Confidence 999999653 211 111 2222335567799999999999887643
No 131
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.42 E-value=0.82 Score=39.75 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=62.0
Q ss_pred CcEEEEEecccc-------cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-----HHHHHHHHHhcCCceEEecCCCCHHH
Q 023072 50 KGAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNGED-----FNQIQEAAEKLKIVVRVYPGRDHADL 117 (287)
Q Consensus 50 ~~i~~vG~~~~~-------Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-----~~~l~~~~~~~~l~~~v~g~~~~~~~ 117 (287)
+.|++.....+. .+...+++.+..+.+..|+++++|-=...+ ...+.+. .... ++.++..--...+
T Consensus 118 ~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~ 195 (269)
T PF05159_consen 118 KYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEEL-PNLP-NVVIIDDDVNLYE 195 (269)
T ss_pred CEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhh-hcCC-CeEEECCCCCHHH
Confidence 357777766554 356677888888888888888877655322 1112221 1111 3333333333347
Q ss_pred HhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 118 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 118 ~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++..||..+-- .+.+-+|||.+|+|||+...
T Consensus 196 Ll~~s~~Vvti-----nStvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 196 LLEQSDAVVTI-----NSTVGLEALLHGKPVIVFGR 226 (269)
T ss_pred HHHhCCEEEEE-----CCHHHHHHHHcCCceEEecC
Confidence 99999987653 36788999999999999754
No 132
>PRK14986 glycogen phosphorylase; Provisional
Probab=94.31 E-value=0.41 Score=47.84 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=84.6
Q ss_pred EEEEEecccccCHHH-HHHH---HHHHHHhcC-----CeEEEEEeCCcC--------HHHHHHHHH------hcCC--ce
Q 023072 52 AYYIGKMVWSKGYKE-LLEL---LDDHQKELA-----GLEVDLYGNGED--------FNQIQEAAE------KLKI--VV 106 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~-ll~a---~~~l~~~~~-----~~~l~i~G~g~~--------~~~l~~~~~------~~~l--~~ 106 (287)
++++-|+..+|.... ++.. +.++... | ...+++.|.... ...+.+.++ ..+. .+
T Consensus 546 d~qakR~heYKRq~LNil~~i~ry~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~~~lkV 624 (815)
T PRK14986 546 DVQIKRIHEYKRQLMNVLHVITRYNRIKAD-PDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV 624 (815)
T ss_pred eeeehhhhhhhhhhHHHhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhcCceeE
Confidence 444558999998877 5554 5555433 3 366777786432 112333343 2222 45
Q ss_pred EEecCCC--CHHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CHHHHHH
Q 023072 107 RVYPGRD--HADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVE 176 (287)
Q Consensus 107 ~v~g~~~--~~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~ 176 (287)
.|+..++ -.+.++..+|+..+.|+. |..|+.=+=+|.-|.+-+.|-.|. .|+... +.||+++. +.+++.+
T Consensus 625 VFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~vG~eN~~~fG~~~~ev~~ 702 (815)
T PRK14986 625 VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHVGEENIFIFGNTAEEVEA 702 (815)
T ss_pred EEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhcCCCcEEEeCCCHHHHHH
Confidence 5566543 444899999999998875 999999999999999999999988 555544 67999997 6666554
No 133
>PLN02448 UDP-glycosyltransferase family protein
Probab=94.10 E-value=3.4 Score=39.06 Aligned_cols=110 Identities=17% Similarity=0.056 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh
Q 023072 64 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 143 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma 143 (287)
+..++++++.. +..++++..++ ...+.+.. +.++.+.+..++.+ ++...++..+- +.+--.+++||++
T Consensus 292 ~~~~~~~l~~~-----~~~~lw~~~~~-~~~~~~~~---~~~~~v~~w~pQ~~-iL~h~~v~~fv--tHgG~nS~~eal~ 359 (459)
T PLN02448 292 MDEIAAGLRDS-----GVRFLWVARGE-ASRLKEIC---GDMGLVVPWCDQLK-VLCHSSVGGFW--THCGWNSTLEAVF 359 (459)
T ss_pred HHHHHHHHHhC-----CCCEEEEEcCc-hhhHhHhc---cCCEEEeccCCHHH-HhccCccceEE--ecCchhHHHHHHH
Confidence 44555555433 45666654432 12232222 22556667777766 88887773332 3444578999999
Q ss_pred cCCeEEeecCCC-----ccccccC-CCeEee---------cCHHHHHHHHHHHHhCC
Q 023072 144 MGKIVVCANHPS-----NDFFKQF-PNCRTY---------DDRNGFVEATLKALAEE 185 (287)
Q Consensus 144 ~G~PVV~s~~~~-----~e~i~~~-~~g~l~---------~d~~~l~~~i~~ll~~~ 185 (287)
+|+|+|+-...+ ...+.+. ..|+-+ -+.+++.+++.+++.++
T Consensus 360 ~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~ 416 (459)
T PLN02448 360 AGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLE 416 (459)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCC
Confidence 999999988754 2223321 234322 27789999999999864
No 134
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=94.02 E-value=0.55 Score=44.78 Aligned_cols=144 Identities=20% Similarity=0.216 Sum_probs=90.3
Q ss_pred EEEEEe-cccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcC
Q 023072 52 AYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNP 128 (287)
Q Consensus 52 i~~vG~-~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~p 128 (287)
.+..|+ ..-+||-+..++++.+. -.++-.|.+.......+... ++=+|..+..+ .+++.+.|||=.
T Consensus 280 AlVyGK~~~~w~~k~~~l~~l~~~----~eih~tV~~~~~~~~~~P~~-------V~NHG~l~~~ef~~lL~~akvfiGl 348 (559)
T PF15024_consen 280 ALVYGKERYMWKGKEKYLDVLHKY----MEIHGTVYDEPQRPPNVPSF-------VKNHGILSGDEFQQLLRKAKVFIGL 348 (559)
T ss_pred eEEEccchhhhcCcHHHHHHHHhh----cEEEEEeccCCCCCcccchh-------hhhcCcCCHHHHHHHHHhhhEeeec
Confidence 445553 33456777777777544 23444444332211222222 22256677777 999999999844
Q ss_pred CC-CCcchHHHHHHHhcCCeEEeecCCC------cccccc-------------------CCCeEeec--CHHHHHHHHHH
Q 023072 129 ST-TDVVCTTTAEALAMGKIVVCANHPS------NDFFKQ-------------------FPNCRTYD--DRNGFVEATLK 180 (287)
Q Consensus 129 s~-~E~~~~~~~EAma~G~PVV~s~~~~------~e~i~~-------------------~~~g~l~~--d~~~l~~~i~~ 180 (287)
-. +| |-+-+||+|+|+|.|-..... .+++.+ .+.-+.++ |.+++.+||++
T Consensus 349 GfP~E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~ 426 (559)
T PF15024_consen 349 GFPYE--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKA 426 (559)
T ss_pred CCCCC--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHH
Confidence 33 35 456799999999998876521 122222 23334555 99999999999
Q ss_pred HHhCCCCCccHHHHhcCCHHHHHHHHHHHHh
Q 023072 181 ALAEEPALPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 181 ll~~~~~~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
+++++..+.-. ..|+-+.+.+|+...++
T Consensus 427 il~~~v~Py~P---~efT~egmLeRv~~~ie 454 (559)
T PF15024_consen 427 ILATPVEPYLP---YEFTCEGMLERVNALIE 454 (559)
T ss_pred HHhcCCCCcCC---cccCHHHHHHHHHHHHH
Confidence 99997553322 35888999999877776
No 135
>PLN02670 transferase, transferring glycosyl groups
Probab=93.80 E-value=1.2 Score=42.24 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=52.5
Q ss_pred EEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec--------CHHH
Q 023072 107 RVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD--------DRNG 173 (287)
Q Consensus 107 ~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~--------d~~~ 173 (287)
.+.+..++.+ +++...+-.+- +.+--++++||+++|+|+|+-..-+ ...+.....|+.++ +.++
T Consensus 342 vv~~W~PQ~~-IL~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~ 418 (472)
T PLN02670 342 IHVGWVPQVK-ILSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDS 418 (472)
T ss_pred EEeCcCCHHH-HhcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHH
Confidence 3357788776 88777764332 2344578999999999999987744 22333334554431 5889
Q ss_pred HHHHHHHHHhCC
Q 023072 174 FVEATLKALAEE 185 (287)
Q Consensus 174 l~~~i~~ll~~~ 185 (287)
+.+++.+++.++
T Consensus 419 i~~av~~vm~~~ 430 (472)
T PLN02670 419 VAESVRLAMVDD 430 (472)
T ss_pred HHHHHHHHhcCc
Confidence 999999999764
No 136
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.53 E-value=0.36 Score=42.06 Aligned_cols=85 Identities=16% Similarity=0.306 Sum_probs=58.4
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
++..|.-+ -|| ..++.+..+.+. ++.+.|+ |.+. ....+++.+++++ +++++-..++..++|..||..|..
T Consensus 162 lI~lGGsD-pk~--lt~kvl~~L~~~--~~nl~iV~gs~~p~l~~l~k~~~~~~-~i~~~~~~~dma~LMke~d~aI~A- 234 (318)
T COG3980 162 LITLGGSD-PKN--LTLKVLAELEQK--NVNLHIVVGSSNPTLKNLRKRAEKYP-NINLYIDTNDMAELMKEADLAISA- 234 (318)
T ss_pred EEEccCCC-hhh--hHHHHHHHhhcc--CeeEEEEecCCCcchhHHHHHHhhCC-CeeeEecchhHHHHHHhcchheec-
Confidence 45555433 343 345555555443 3667666 6544 4677888887766 667776666566899999998763
Q ss_pred CCCcchHHHHHHHhcCCe
Q 023072 130 TTDVVCTTTAEALAMGKI 147 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~P 147 (287)
-|.++.||+..|+|
T Consensus 235 ----aGstlyEa~~lgvP 248 (318)
T COG3980 235 ----AGSTLYEALLLGVP 248 (318)
T ss_pred ----cchHHHHHHHhcCC
Confidence 38999999999999
No 137
>PLN02210 UDP-glucosyl transferase
Probab=93.36 E-value=1.9 Score=40.75 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=52.5
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccccc-CCCeEee-------c-C
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY-------D-D 170 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~-~~~g~l~-------~-d 170 (287)
+..+.+..++.+ ++..+.+..+- +.+--.+++||+++|+|+|+-...+ ...+.+ -..|..+ . +
T Consensus 325 ~g~v~~w~PQ~~-iL~h~~vg~Fi--tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~ 401 (456)
T PLN02210 325 QGVVLEWSPQEK-ILSHMAISCFV--THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELK 401 (456)
T ss_pred CeEEEecCCHHH-HhcCcCcCeEE--eeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCC
Confidence 344567788776 88888743332 2333358899999999999987744 223333 2355433 1 7
Q ss_pred HHHHHHHHHHHHhCC
Q 023072 171 RNGFVEATLKALAEE 185 (287)
Q Consensus 171 ~~~l~~~i~~ll~~~ 185 (287)
.+++.+++++++.++
T Consensus 402 ~~~l~~av~~~m~~~ 416 (456)
T PLN02210 402 VEEVERCIEAVTEGP 416 (456)
T ss_pred HHHHHHHHHHHhcCc
Confidence 889999999999763
No 138
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.31 E-value=0.55 Score=40.95 Aligned_cols=95 Identities=18% Similarity=0.110 Sum_probs=60.8
Q ss_pred EEEecccccC--HHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcC-CceE-EecCCCCHH--HHhhhCCEEEc
Q 023072 54 YIGKMVWSKG--YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK-IVVR-VYPGRDHAD--LIFHDYKVFLN 127 (287)
Q Consensus 54 ~vG~~~~~Kg--~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~-l~~~-v~g~~~~~~--~~~~~adv~v~ 127 (287)
..|.-.+.|. .+.+.+.+..+.++ +++++++|..++.+..++..+..+ .++. +.+..+-.+ .+++.||++|-
T Consensus 127 ~~~~~~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~ 204 (279)
T cd03789 127 PPGASGPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVT 204 (279)
T ss_pred CCCCCCccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEe
Confidence 3444344454 45777777777654 788999998777666666655542 2222 235544444 99999999998
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+. + |..-+ |.|+|+|+|+--.+.
T Consensus 205 ~D---s-g~~Hl-A~a~~~p~i~l~g~~ 227 (279)
T cd03789 205 ND---S-GPMHL-AAALGTPTVALFGPT 227 (279)
T ss_pred eC---C-HHHHH-HHHcCCCEEEEECCC
Confidence 63 3 33333 469999999876544
No 139
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=93.10 E-value=0.33 Score=44.09 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHH
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEA 141 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EA 141 (287)
+.+..+++++.++.+.. ..+++.|... .+.+++...+.. ...+.+ +..++|+.||+.+..| |++.+|+
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~~-~~~i~~~~~~~~-~~~~~~---~~~~~m~~aDlal~~S-----GT~TLE~ 250 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFFK-GKDLKEIYGDIS-EFEISY---DTHKALLEAEFAFICS-----GTATLEA 250 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCCc-HHHHHHHHhcCC-CcEEec---cHHHHHHhhhHHHhcC-----cHHHHHH
Confidence 56677788988887653 6777777654 355565554332 334442 3337999999998765 7888899
Q ss_pred HhcCCeEEeec
Q 023072 142 LAMGKIVVCAN 152 (287)
Q Consensus 142 ma~G~PVV~s~ 152 (287)
+.+|+|.|..-
T Consensus 251 al~g~P~Vv~Y 261 (347)
T PRK14089 251 ALIGTPFVLAY 261 (347)
T ss_pred HHhCCCEEEEE
Confidence 99999999854
No 140
>PLN02562 UDP-glycosyltransferase
Probab=92.97 E-value=1.1 Score=42.16 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=52.5
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccccc-CCCeEeec--CHHHHHH
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTYD--DRNGFVE 176 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~-~~~g~l~~--d~~~l~~ 176 (287)
++.+.+..++.+ ++...++..+- +.+--.+++||+++|+|+|+-..-+ ...+.+ -..|+-+. +.+++.+
T Consensus 329 ~~~v~~w~PQ~~-iL~h~~v~~fv--tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~ 405 (448)
T PLN02562 329 QGKVVSWAPQLE-VLKHQAVGCYL--THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGFGQKEVEE 405 (448)
T ss_pred CEEEEecCCHHH-HhCCCccceEE--ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCCCHHHHHH
Confidence 555667777666 77776653332 2344578999999999999987744 223322 23454443 8899999
Q ss_pred HHHHHHhC
Q 023072 177 ATLKALAE 184 (287)
Q Consensus 177 ~i~~ll~~ 184 (287)
++++++.+
T Consensus 406 ~v~~~l~~ 413 (448)
T PLN02562 406 GLRKVMED 413 (448)
T ss_pred HHHHHhCC
Confidence 99999975
No 141
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=92.88 E-value=0.94 Score=44.88 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=81.0
Q ss_pred EEEEEecccccCHHHHHH----HHHHHH-HhcCCeEEEEEeCCcC--------HHHHHHHHHhc--CCceEEecCCCCH-
Q 023072 52 AYYIGKMVWSKGYKELLE----LLDDHQ-KELAGLEVDLYGNGED--------FNQIQEAAEKL--KIVVRVYPGRDHA- 115 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~----a~~~l~-~~~~~~~l~i~G~g~~--------~~~l~~~~~~~--~l~~~v~g~~~~~- 115 (287)
++++=|+..+|..+..+. .+..++ +..|.+.+++.|.... ...+...++.. .+++.|++.++-.
T Consensus 490 d~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nYdvsl 569 (750)
T COG0058 490 DGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNYDVSL 569 (750)
T ss_pred eeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCCChhH
Confidence 555558999997665553 333443 2234465566676432 12233344443 2356666765433
Q ss_pred -HHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-ccccc--cCCCeEeec
Q 023072 116 -DLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFK--QFPNCRTYD 169 (287)
Q Consensus 116 -~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~--~~~~g~l~~ 169 (287)
+.++.+|||-.+.|+. |..|+.-+=||--|.+-|.|-.|. .|+.. ++.||+++.
T Consensus 570 A~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg~~N~~~fG 629 (750)
T COG0058 570 AELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVGGENGWIFG 629 (750)
T ss_pred HHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcCCCceEEeC
Confidence 3889999999998875 999999999999999999999988 56554 778999987
No 142
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.52 E-value=0.85 Score=45.67 Aligned_cols=124 Identities=12% Similarity=0.082 Sum_probs=83.6
Q ss_pred EEEEEecccccCHHH-HH---HHHHHHHHhcCC-----eEEEEEeCCcC-H-------HHHHHHHHh------cCC--ce
Q 023072 52 AYYIGKMVWSKGYKE-LL---ELLDDHQKELAG-----LEVDLYGNGED-F-------NQIQEAAEK------LKI--VV 106 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~-ll---~a~~~l~~~~~~-----~~l~i~G~g~~-~-------~~l~~~~~~------~~l--~~ 106 (287)
.+++=|+..+|.... ++ +.+.++.+. |+ ..+++.|.... . ..+...++. .+. .+
T Consensus 533 dvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~~~lkV 611 (797)
T cd04300 533 DVQVKRIHEYKRQLLNVLHIIHLYNRIKEN-PNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVGDKLKV 611 (797)
T ss_pred EEEeeechhhhhhhhHHHhhHHHHHHHHhC-CCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcCCceEE
Confidence 455669999998887 44 445555443 32 56666676432 1 112333332 222 45
Q ss_pred EEecCC--CCHHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CHHHHHH
Q 023072 107 RVYPGR--DHADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVE 176 (287)
Q Consensus 107 ~v~g~~--~~~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~ 176 (287)
.|+..+ .-.+.++.+||+..+.|+. |..|+.=+=+|.-|.+.+.|-.|. .|+... ..|++++. +.+++.+
T Consensus 612 VFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 612 VFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred EEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 555554 3444899999999998875 999999999999999999999888 555544 57899997 6666554
No 143
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=92.46 E-value=0.88 Score=42.92 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=54.2
Q ss_pred hcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEee------
Q 023072 101 KLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY------ 168 (287)
Q Consensus 101 ~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~------ 168 (287)
+...+..+.+..++.+ ++...++-.+-+ .+--++++||+.+|+|+|+-..-+ ...+.+. ..|+-.
T Consensus 324 ~~~~~g~v~~W~PQ~~-iL~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 400 (455)
T PLN02152 324 ELEEVGMIVSWCSQIE-VLRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEG 400 (455)
T ss_pred hccCCeEEEeeCCHHH-HhCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCC
Confidence 3444556677787666 888887654433 334478999999999999987744 1222221 123221
Q ss_pred -cCHHHHHHHHHHHHhCC
Q 023072 169 -DDRNGFVEATLKALAEE 185 (287)
Q Consensus 169 -~d~~~l~~~i~~ll~~~ 185 (287)
-+.+++.+++.+++.++
T Consensus 401 ~~~~e~l~~av~~vm~~~ 418 (455)
T PLN02152 401 LVERGEIRRCLEAVMEEK 418 (455)
T ss_pred cCcHHHHHHHHHHHHhhh
Confidence 17789999999999753
No 144
>PLN03004 UDP-glycosyltransferase
Probab=91.73 E-value=1.4 Score=41.56 Aligned_cols=77 Identities=9% Similarity=-0.052 Sum_probs=52.9
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccccc-CCCeEee------c-CH
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY------D-DR 171 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~-~~~g~l~------~-d~ 171 (287)
++.+.+..++.+ +++.+++-.+-+ .+--++++||+++|+|+|+-..-+ ...+.+ -..|... . +.
T Consensus 335 g~~v~~W~PQ~~-iL~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~ 411 (451)
T PLN03004 335 GMVVKSWAPQVP-VLNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSS 411 (451)
T ss_pred cEEEEeeCCHHH-HhCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCH
Confidence 344557777776 888888844432 334478999999999999988744 223332 2345433 1 78
Q ss_pred HHHHHHHHHHHhC
Q 023072 172 NGFVEATLKALAE 184 (287)
Q Consensus 172 ~~l~~~i~~ll~~ 184 (287)
+++.+++.+++.+
T Consensus 412 e~l~~av~~vm~~ 424 (451)
T PLN03004 412 TEVEKRVQEIIGE 424 (451)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999975
No 145
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=91.58 E-value=3.5 Score=40.87 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=73.3
Q ss_pred EEEEEecccccCHHHH----HHHHHHHHHhc----CCeEEEEEeCCcC-HH----H---HHHHHHh------cCC--ceE
Q 023072 52 AYYIGKMVWSKGYKEL----LELLDDHQKEL----AGLEVDLYGNGED-FN----Q---IQEAAEK------LKI--VVR 107 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~l----l~a~~~l~~~~----~~~~l~i~G~g~~-~~----~---l~~~~~~------~~l--~~~ 107 (287)
.+++-|+..+|..... +..+..+.+.- ....+++.|.... .. - +.+.++. .+. .+.
T Consensus 447 dv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVv 526 (713)
T PF00343_consen 447 DVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVV 526 (713)
T ss_dssp EEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEE
T ss_pred hhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEE
Confidence 4566699999988773 34555554431 2467888887432 11 1 2222221 222 345
Q ss_pred EecCCCC--HHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CHHHHHH
Q 023072 108 VYPGRDH--ADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVE 176 (287)
Q Consensus 108 v~g~~~~--~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~ 176 (287)
|+..++- .+.++..+||..+.|+. |..|+.-+=+|.-|.+-+++-.|. .|+... ..|++++. +.+++.+
T Consensus 527 FlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev~~ 603 (713)
T PF00343_consen 527 FLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEVEE 603 (713)
T ss_dssp EETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHH
T ss_pred eecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHHHH
Confidence 5666543 33899999999998875 999999999999999999998888 555432 35788887 6666543
No 146
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.32 E-value=1.4 Score=39.74 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=66.4
Q ss_pred cEEEEE-ecccccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEE
Q 023072 51 GAYYIG-KMVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVF 125 (287)
Q Consensus 51 ~i~~vG-~~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~ 125 (287)
.++..| .-...|++. .+.+.+..+.+.. .+++++|+..+.+..+++.+.++....+.|..+-.+ .++..||++
T Consensus 178 i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~--~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~ 255 (334)
T COG0859 178 IVINPGASRGSAKRWPLEHYAELAELLIAKG--YQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLV 255 (334)
T ss_pred EEEeccccccccCCCCHHHHHHHHHHHHHCC--CEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEE
Confidence 355566 444666654 6666666666654 889999988777777777777664433556665555 899999999
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
|-+ ++- .+==|.|.|+|+|+--.+.
T Consensus 256 I~~---DSg--~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 256 IGN---DSG--PMHLAAALGTPTIALYGPT 280 (334)
T ss_pred Ecc---CCh--HHHHHHHcCCCEEEEECCC
Confidence 875 332 2333788999999976443
No 147
>PLN03007 UDP-glucosyltransferase family protein
Probab=90.87 E-value=5.2 Score=38.07 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=51.6
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----c-ccccc-CCCeEe---------e-
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQ-FPNCRT---------Y- 168 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~-e~i~~-~~~g~l---------~- 168 (287)
++.+.+..++.+ ++..+++-.+- +.+--.+++||+++|+|+|+-..-+ + ..+.+ -..|.- .
T Consensus 346 g~~v~~w~PQ~~-iL~h~~v~~fv--tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~ 422 (482)
T PLN03007 346 GLIIRGWAPQVL-ILDHQATGGFV--THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKG 422 (482)
T ss_pred CEEEecCCCHHH-HhccCccceee--ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccccc
Confidence 555668888876 88888763332 2333578999999999999988744 1 11111 012211 1
Q ss_pred c--CHHHHHHHHHHHHhCC
Q 023072 169 D--DRNGFVEATLKALAEE 185 (287)
Q Consensus 169 ~--d~~~l~~~i~~ll~~~ 185 (287)
+ +.+++.+++++++.++
T Consensus 423 ~~~~~~~l~~av~~~m~~~ 441 (482)
T PLN03007 423 DFISREKVEKAVREVIVGE 441 (482)
T ss_pred CcccHHHHHHHHHHHhcCc
Confidence 1 8889999999999874
No 148
>PLN02173 UDP-glucosyl transferase family protein
Probab=90.69 E-value=5 Score=37.81 Aligned_cols=79 Identities=10% Similarity=0.044 Sum_probs=54.6
Q ss_pred CceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEeec--------
Q 023072 104 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD-------- 169 (287)
Q Consensus 104 l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~~-------- 169 (287)
-++.+.+..++.+ ++....+..+-+ .+-.++++||+++|+|+|+-..-+ ...+.+. ..|+-+.
T Consensus 317 ~~~~i~~W~PQ~~-iL~H~~v~~Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~ 393 (449)
T PLN02173 317 DKSLVLKWSPQLQ-VLSNKAIGCFMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIA 393 (449)
T ss_pred CceEEeCCCCHHH-HhCCCccceEEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcc
Confidence 3566678888776 888877554433 344588999999999999988744 2233331 2443221
Q ss_pred CHHHHHHHHHHHHhCC
Q 023072 170 DRNGFVEATLKALAEE 185 (287)
Q Consensus 170 d~~~l~~~i~~ll~~~ 185 (287)
+.+++.+++++++.++
T Consensus 394 ~~e~v~~av~~vm~~~ 409 (449)
T PLN02173 394 KREEIEFSIKEVMEGE 409 (449)
T ss_pred cHHHHHHHHHHHhcCC
Confidence 6799999999999764
No 149
>PLN02555 limonoid glucosyltransferase
Probab=90.59 E-value=1.8 Score=41.20 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=52.0
Q ss_pred CCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEee------
Q 023072 103 KIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTY------ 168 (287)
Q Consensus 103 ~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~------ 168 (287)
+-++.+.+..++.+ ++.. ..+||. .+--.+++||+.+|+|+|+-..-+ ...+.+. ..|+-.
T Consensus 336 ~~~g~v~~W~PQ~~-iL~H~~v~~Fvt----H~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~ 410 (480)
T PLN02555 336 GDKGKIVQWCPQEK-VLAHPSVACFVT----HCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAE 410 (480)
T ss_pred CCceEEEecCCHHH-HhCCCccCeEEe----cCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccc
Confidence 33566667888766 7754 445543 334578999999999999988743 2223332 345333
Q ss_pred --c-CHHHHHHHHHHHHhCC
Q 023072 169 --D-DRNGFVEATLKALAEE 185 (287)
Q Consensus 169 --~-d~~~l~~~i~~ll~~~ 185 (287)
. +.+++.+++++++.++
T Consensus 411 ~~~v~~~~v~~~v~~vm~~~ 430 (480)
T PLN02555 411 NKLITREEVAECLLEATVGE 430 (480)
T ss_pred cCcCcHHHHHHHHHHHhcCc
Confidence 1 6889999999999763
No 150
>PLN00414 glycosyltransferase family protein
Probab=90.41 E-value=5.5 Score=37.51 Aligned_cols=74 Identities=7% Similarity=-0.020 Sum_probs=50.0
Q ss_pred ecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccc-cCCCeEee-------cCHHHHH
Q 023072 109 YPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY-------DDRNGFV 175 (287)
Q Consensus 109 ~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~-~~~~g~l~-------~d~~~l~ 175 (287)
.+..++.+ ++....+..+- +.+--++++||+++|+|+|+-..-+ ...+. ....|..+ -+.+++.
T Consensus 317 ~~w~PQ~~-vL~h~~v~~fv--tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~ 393 (446)
T PLN00414 317 EGWVEQPL-ILSHPSVGCFV--NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLR 393 (446)
T ss_pred eccCCHHH-HhcCCccceEE--ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHH
Confidence 36777766 78777443222 2344588999999999999988744 22332 22345443 2788999
Q ss_pred HHHHHHHhCC
Q 023072 176 EATLKALAEE 185 (287)
Q Consensus 176 ~~i~~ll~~~ 185 (287)
+++++++.++
T Consensus 394 ~~v~~~m~~~ 403 (446)
T PLN00414 394 DTVKSVMDKD 403 (446)
T ss_pred HHHHHHhcCC
Confidence 9999999764
No 151
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=90.40 E-value=1.5 Score=42.53 Aligned_cols=92 Identities=8% Similarity=0.018 Sum_probs=58.9
Q ss_pred EEEE-ecc-cccCHHHHHHHHH--HHHHhcCCeEEEEEeCCc-CHHHHHHHHHhcC-CceEEecCCCCHHHHhhhCCEEE
Q 023072 53 YYIG-KMV-WSKGYKELLELLD--DHQKELAGLEVDLYGNGE-DFNQIQEAAEKLK-IVVRVYPGRDHADLIFHDYKVFL 126 (287)
Q Consensus 53 ~~vG-~~~-~~Kg~~~ll~a~~--~l~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~-l~~~v~g~~~~~~~~~~~adv~v 126 (287)
++-| |-. -.+.+..+++++. .+. ++.++++....+ +.+.+++..+..+ +.+++.... +..++++.||+.+
T Consensus 418 LLPGSR~~EI~rllPv~l~aa~~~~l~---~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~~m~aaD~aL 493 (608)
T PRK01021 418 AFPGSRRGDILRNLTIQVQAFLASSLA---STHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYELMRECDCAL 493 (608)
T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHhc---cCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHHHHHhcCeee
Confidence 4445 432 3357778888887 442 357776653322 2455666665444 244554221 1237999999998
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..| |++.+|++.+|+|.|..=.
T Consensus 494 aaS-----GTaTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 494 AKC-----GTIVLETALNQTPTIVTCQ 515 (608)
T ss_pred ecC-----CHHHHHHHHhCCCEEEEEe
Confidence 876 8999999999999887543
No 152
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=90.28 E-value=1.5 Score=43.84 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=83.0
Q ss_pred EEEEEecccccCHHH-HHHH---HHHHHHhcC-----CeEEEEEeCCcC-H-------HHHHHHHHh------cC--Cce
Q 023072 52 AYYIGKMVWSKGYKE-LLEL---LDDHQKELA-----GLEVDLYGNGED-F-------NQIQEAAEK------LK--IVV 106 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~-ll~a---~~~l~~~~~-----~~~l~i~G~g~~-~-------~~l~~~~~~------~~--l~~ 106 (287)
.+++=|+..+|.... ++.. +.++.+. | ...+++.|.... . ..+.+.++. .+ +.+
T Consensus 530 dvq~KR~heYKRq~LNil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~~~lkV 608 (794)
T TIGR02093 530 DVQVKRLHEYKRQLLNVLHVIYLYNRIKED-PPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVGDKLKV 608 (794)
T ss_pred hhhheechhhhHHHHHHhhhHHHHHHHHhC-CCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhCCceeE
Confidence 344558999998877 5544 5555433 3 346777776432 1 112233322 12 245
Q ss_pred EEecCC--CCHHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CHHHHHH
Q 023072 107 RVYPGR--DHADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVE 176 (287)
Q Consensus 107 ~v~g~~--~~~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~ 176 (287)
.|+..+ .-.+.++.+||+..+.|+. |..|+.=+=+|.-|.+-+.|-.|. .|+... ..|++++. +.+++.+
T Consensus 609 VFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e~vG~eN~fiFG~~~~ev~~ 686 (794)
T TIGR02093 609 VFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIREEVGAENIFIFGLTVEEVEA 686 (794)
T ss_pred EEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHHHhCcccEEEcCCCHHHHHH
Confidence 556554 3444899999999998875 999999999999999999998888 555444 57899997 7776554
No 153
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=90.20 E-value=1.3 Score=44.16 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=84.7
Q ss_pred CCCcEEE---EEecccccCHHH-HHHH---HHHHHHhcCC-----eEEEEEeCCcC-HH-------HHHHHHHhc-----
Q 023072 48 FAKGAYY---IGKMVWSKGYKE-LLEL---LDDHQKELAG-----LEVDLYGNGED-FN-------QIQEAAEKL----- 102 (287)
Q Consensus 48 ~~~~i~~---vG~~~~~Kg~~~-ll~a---~~~l~~~~~~-----~~l~i~G~g~~-~~-------~l~~~~~~~----- 102 (287)
+++..+| +=|+..+|.... ++.. +.++.+. |+ .++++.|.... .. .+.+.++..
T Consensus 525 ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~-p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~ 603 (798)
T PRK14985 525 INPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIREN-PQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPL 603 (798)
T ss_pred cCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhC-CCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChh
Confidence 3444455 448999998777 5544 4444333 32 66777776432 11 223333222
Q ss_pred -C--CceEEecCC--CCHHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CH
Q 023072 103 -K--IVVRVYPGR--DHADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DR 171 (287)
Q Consensus 103 -~--l~~~v~g~~--~~~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~ 171 (287)
+ +.+.|+..+ .-.+.++..||+..+.|+. |..|+.=+=+|.-|.+-+.|-.|. .|+... +.|++++. +.
T Consensus 604 v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG~eN~f~fG~~~ 683 (798)
T PRK14985 604 VGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVGEENIFIFGHTV 683 (798)
T ss_pred hCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhCcCcEEEeCCCH
Confidence 1 245555554 3444899999999998875 999999999999999999999888 555543 57999997 66
Q ss_pred HHHHH
Q 023072 172 NGFVE 176 (287)
Q Consensus 172 ~~l~~ 176 (287)
+++.+
T Consensus 684 ~ev~~ 688 (798)
T PRK14985 684 EQVKA 688 (798)
T ss_pred HHHHH
Confidence 66544
No 154
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=90.12 E-value=2.2 Score=38.58 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCC
Q 023072 67 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGK 146 (287)
Q Consensus 67 ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~ 146 (287)
+-+.+..+.+. .+. ++++-...+.. +..++++ +.+....-+.-.++.-||++|- +-|+...||..+|+
T Consensus 201 ~~~ii~~L~~~-~~~-vV~ipr~~~~~---~~~~~~~--~~i~~~~vd~~~Ll~~a~l~Ig-----~ggTMa~EAA~LGt 268 (335)
T PF04007_consen 201 LPEIIEELEKY-GRN-VVIIPRYEDQR---ELFEKYG--VIIPPEPVDGLDLLYYADLVIG-----GGGTMAREAALLGT 268 (335)
T ss_pred HHHHHHHHHhh-Cce-EEEecCCcchh---hHHhccC--ccccCCCCCHHHHHHhcCEEEe-----CCcHHHHHHHHhCC
Confidence 34555555444 344 55554433322 2334444 3343333233369999999974 33678899999999
Q ss_pred eEEeecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 147 IVVCANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 147 PVV~s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
|.|.+-.+. ..++.+ .|+++. |++++.+.+.+.+..
T Consensus 269 PaIs~~~g~~~~vd~~L~~--~Gll~~~~~~~ei~~~v~~~~~~ 310 (335)
T PF04007_consen 269 PAISCFPGKLLAVDKYLIE--KGLLYHSTDPDEIVEYVRKNLGK 310 (335)
T ss_pred CEEEecCCcchhHHHHHHH--CCCeEecCCHHHHHHHHHHhhhc
Confidence 999876432 234444 576664 999999877766554
No 155
>PLN02207 UDP-glycosyltransferase
Probab=90.09 E-value=7.7 Score=36.79 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=50.4
Q ss_pred CceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----cc-cccc-CCCeEee---------
Q 023072 104 IVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----ND-FFKQ-FPNCRTY--------- 168 (287)
Q Consensus 104 l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e-~i~~-~~~g~l~--------- 168 (287)
.+..+.+..++.+ +++...+-.+-+ .+--++++||+++|+|+|+-..-+ +. .+.+ -..|+-+
T Consensus 332 ~~g~i~~W~PQ~~-IL~H~~vg~FvT--H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~ 408 (468)
T PLN02207 332 GRGMICGWSPQVE-ILAHKAVGGFVS--HCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSD 408 (468)
T ss_pred CCeEEEEeCCHHH-Hhcccccceeee--cCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccC
Confidence 3555567777776 777766633322 333357899999999999987744 22 2222 2234311
Q ss_pred --cCHHHHHHHHHHHHhC
Q 023072 169 --DDRNGFVEATLKALAE 184 (287)
Q Consensus 169 --~d~~~l~~~i~~ll~~ 184 (287)
-+.+++.++|++++.+
T Consensus 409 ~~v~~e~i~~av~~vm~~ 426 (468)
T PLN02207 409 EIVNANEIETAIRCVMNK 426 (468)
T ss_pred CcccHHHHHHHHHHHHhc
Confidence 1778999999999963
No 156
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=89.99 E-value=4.5 Score=36.18 Aligned_cols=101 Identities=20% Similarity=0.140 Sum_probs=62.5
Q ss_pred cEEEEEeccccc--CH---HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHh-cC--CceEEecCCCCHH--HHhh
Q 023072 51 GAYYIGKMVWSK--GY---KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LK--IVVRVYPGRDHAD--LIFH 120 (287)
Q Consensus 51 ~i~~vG~~~~~K--g~---~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~--l~~~v~g~~~~~~--~~~~ 120 (287)
..+.||.-...- +- ..+++.+..+.+..+ ..+.|..+.-...++.+...+ ++ ..+.++....... .+|.
T Consensus 149 ~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La 227 (311)
T PF06258_consen 149 VAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLA 227 (311)
T ss_pred EEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHH
Confidence 566788543332 22 356667777766654 788888876554444333333 21 2444553322222 8999
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
.||.++.+. |.. .-+.||+++|+||..-..++
T Consensus 228 ~ad~i~VT~--DSv-SMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 228 AADAIVVTE--DSV-SMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred hCCEEEEcC--ccH-HHHHHHHHcCCCEEEecCCC
Confidence 999999853 333 34789999999999988765
No 157
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.77 E-value=9.8 Score=33.73 Aligned_cols=124 Identities=16% Similarity=0.060 Sum_probs=71.2
Q ss_pred cEEEEEecccccCH--HHHHHHHHHHHHhcCCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEE
Q 023072 51 GAYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVF 125 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~ 125 (287)
.+++.|.=.+.|.+ +.+.+.+..+.++ +..+++.|.++ +.+..++..+..+ +..+.|..+-.+ .+++.||++
T Consensus 182 i~i~~gas~~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sL~el~ali~~a~l~ 258 (319)
T TIGR02193 182 AVLLHATSRDDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALP-GAVVLPKMSLAEVAALLAGADAV 258 (319)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCC-CCeecCCCCHHHHHHHHHcCCEE
Confidence 35556643466665 3666666666543 57788875444 4344555554444 234556665555 999999999
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC--ccccccCCC-eEe-----ec-CHHHHHHHHHHHH
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS--NDFFKQFPN-CRT-----YD-DRNGFVEATLKAL 182 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~--~e~i~~~~~-g~l-----~~-d~~~l~~~i~~ll 182 (287)
|-. ++-++=+ |.|+|+|+|+-=.+. ..+.--+.+ ..+ -. ++++..+++.+++
T Consensus 259 I~~---DSgp~Hl--Aaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 259 VGV---DTGLTHL--AAALDKPTVTLYGATDPGRTGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred EeC---CChHHHH--HHHcCCCEEEEECCCCHhhcccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 874 4444444 567899999865433 111111111 122 12 7788888777653
No 158
>PLN02764 glycosyltransferase family protein
Probab=88.48 E-value=16 Score=34.49 Aligned_cols=74 Identities=8% Similarity=-0.049 Sum_probs=49.4
Q ss_pred ecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccccc-CCCeEee------c-CHHHHH
Q 023072 109 YPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQ-FPNCRTY------D-DRNGFV 175 (287)
Q Consensus 109 ~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~-~~~g~l~------~-d~~~l~ 175 (287)
.+..++.+ ++....+..+- +.+--.+++||+++|+|+|+-...+ ...+.+ -..|+-+ . +.+++.
T Consensus 322 ~~W~PQ~~-vL~h~~v~~Fv--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~ 398 (453)
T PLN02764 322 GGWVQQPL-ILSHPSVGCFV--SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLR 398 (453)
T ss_pred eCCCCHHH-HhcCcccCeEE--ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHH
Confidence 36666666 77776553332 2444578999999999999988754 223322 2234332 1 789999
Q ss_pred HHHHHHHhCC
Q 023072 176 EATLKALAEE 185 (287)
Q Consensus 176 ~~i~~ll~~~ 185 (287)
+++++++.++
T Consensus 399 ~av~~vm~~~ 408 (453)
T PLN02764 399 DAINSVMKRD 408 (453)
T ss_pred HHHHHHhcCC
Confidence 9999999864
No 159
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=88.38 E-value=3.3 Score=37.08 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=59.6
Q ss_pred EEEEe-cccccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCce-EEecCCCCHH--HHhhhCCEEE
Q 023072 53 YYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV-RVYPGRDHAD--LIFHDYKVFL 126 (287)
Q Consensus 53 ~~vG~-~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~-~v~g~~~~~~--~~~~~adv~v 126 (287)
+..|. ..+.|.+. .+.+.+..+.+. +.++++.|+..+.+..++..+..+..+ .+.|..+-.+ .+++.||++|
T Consensus 179 i~pga~~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~l~I 256 (334)
T TIGR02195 179 FCPGAEFGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAKAVV 256 (334)
T ss_pred EcCCCCCCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCCEEE
Confidence 34443 34666554 566666666543 578899998877666666555443222 1335555445 9999999998
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
-. ++-++= =|.|+|+|+|+-=.+.
T Consensus 257 ~~---DSGp~H--lAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 257 TN---DSGLMH--VAAALNRPLVALYGST 280 (334)
T ss_pred ee---CCHHHH--HHHHcCCCEEEEECCC
Confidence 74 443333 3668999999754433
No 160
>PLN02208 glycosyltransferase family protein
Probab=87.77 E-value=9.4 Score=35.94 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=52.7
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----cc-cccc-CCCeEee-------cCH
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----ND-FFKQ-FPNCRTY-------DDR 171 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e-~i~~-~~~g~l~-------~d~ 171 (287)
++.+.+..++.+ +++...+-.+-| .+--++++||+++|+|+|+-..-+ +. .+.+ -..|..+ -+.
T Consensus 312 g~~v~~W~PQ~~-iL~H~~v~~Fvt--HcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~ 388 (442)
T PLN02208 312 GVVWGGWVQQPL-ILDHPSIGCFVN--HCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSK 388 (442)
T ss_pred CcEeeccCCHHH-HhcCCccCeEEc--cCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcH
Confidence 344457777776 888777654433 334478999999999999987744 22 2222 2345444 167
Q ss_pred HHHHHHHHHHHhCC
Q 023072 172 NGFVEATLKALAEE 185 (287)
Q Consensus 172 ~~l~~~i~~ll~~~ 185 (287)
+++.+++.++++++
T Consensus 389 ~~l~~ai~~~m~~~ 402 (442)
T PLN02208 389 ESLSNAIKSVMDKD 402 (442)
T ss_pred HHHHHHHHHHhcCC
Confidence 89999999999765
No 161
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.70 E-value=9.9 Score=33.07 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=60.1
Q ss_pred CcEEEEEecccccCH-----HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHh-cC-CceEEecCCCCHH----HH
Q 023072 50 KGAYYIGKMVWSKGY-----KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LK-IVVRVYPGRDHAD----LI 118 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~-----~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~-l~~~v~g~~~~~~----~~ 118 (287)
.+.++||.-.+.-.+ ..++.++.+..+. ....|++--+....+.++..++. +. ..+.|..+.+... ++
T Consensus 163 ~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~-~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~ 241 (329)
T COG3660 163 RVAVLVGGNNKAFVFQEDKAHQFASLLVKILEN-QGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDM 241 (329)
T ss_pred eEEEEecCCCCCCccCHHHHHHHHHHHHHHHHh-CCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHH
Confidence 356778854443333 3444444444333 34666666665555666666554 22 2344444442222 79
Q ss_pred hhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 119 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 119 ~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+..||.+|.+.-+=. -.-||.|.|+||-+...+.
T Consensus 242 La~Adyii~TaDSin---M~sEAasTgkPv~~~~~~~ 275 (329)
T COG3660 242 LAAADYIISTADSIN---MCSEAASTGKPVFILEPPN 275 (329)
T ss_pred HhhcceEEEecchhh---hhHHHhccCCCeEEEecCC
Confidence 999999998644332 2469999999998876544
No 162
>PLN00164 glucosyltransferase; Provisional
Probab=87.23 E-value=17 Score=34.65 Aligned_cols=75 Identities=11% Similarity=-0.079 Sum_probs=49.2
Q ss_pred ecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----cc-cccc-CCCeEeec---------CHHH
Q 023072 109 YPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----ND-FFKQ-FPNCRTYD---------DRNG 173 (287)
Q Consensus 109 ~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e-~i~~-~~~g~l~~---------d~~~ 173 (287)
.+..++.+ ++...++-.+- +.+--.+++||+++|+|+|+-..-+ +. .+.+ -..|+... +.++
T Consensus 344 ~~w~PQ~~-iL~h~~vg~fv--tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~ 420 (480)
T PLN00164 344 PTWAPQKE-ILAHAAVGGFV--THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAE 420 (480)
T ss_pred eecCCHHH-HhcCcccCeEE--eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHH
Confidence 46677666 77777653332 2333468899999999999987743 22 2322 23454331 5789
Q ss_pred HHHHHHHHHhCCC
Q 023072 174 FVEATLKALAEEP 186 (287)
Q Consensus 174 l~~~i~~ll~~~~ 186 (287)
+.++|.+++.++.
T Consensus 421 l~~av~~vm~~~~ 433 (480)
T PLN00164 421 LERAVRSLMGGGE 433 (480)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999997643
No 163
>PLN02554 UDP-glycosyltransferase family protein
Probab=87.10 E-value=16 Score=34.78 Aligned_cols=76 Identities=8% Similarity=-0.067 Sum_probs=48.8
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----cc-c-cccCCCeEee----------
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----ND-F-FKQFPNCRTY---------- 168 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e-~-i~~~~~g~l~---------- 168 (287)
++.+.+..++.+ +++...+-.+- +.+--.+++||+.+|+|+|+-..-+ +. . +..-..|..+
T Consensus 343 ~g~v~~W~PQ~~-iL~H~~v~~Fv--tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~ 419 (481)
T PLN02554 343 IGKVIGWAPQVA-VLAKPAIGGFV--THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLA 419 (481)
T ss_pred CceEEeeCCHHH-HhCCcccCccc--ccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccc
Confidence 455567777666 77544443222 2333568999999999999987744 22 2 2222334322
Q ss_pred ----c-CHHHHHHHHHHHHh
Q 023072 169 ----D-DRNGFVEATLKALA 183 (287)
Q Consensus 169 ----~-d~~~l~~~i~~ll~ 183 (287)
. +.+++.+++.+++.
T Consensus 420 ~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 420 GEMETVTAEEIERGIRCLME 439 (481)
T ss_pred cccCeEcHHHHHHHHHHHhc
Confidence 2 78899999999996
No 164
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=87.07 E-value=0.86 Score=40.04 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCC-eEEeecC
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~-PVV~s~~ 153 (287)
+.|+.+..++.|.-...+..-++|||++|| |||.++.
T Consensus 232 ~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~ 269 (302)
T PF03016_consen 232 ELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDD 269 (302)
T ss_pred HhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCc
Confidence 789999999998777778999999999999 8888765
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=86.41 E-value=4.6 Score=34.26 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=53.4
Q ss_pred cEEEEEecccccCHHH--HHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCC-ceEEecCCCCHH--HHhhhCC
Q 023072 51 GAYYIGKMVWSKGYKE--LLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI-VVRVYPGRDHAD--LIFHDYK 123 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~--ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l-~~~v~g~~~~~~--~~~~~ad 123 (287)
.+++.|.-.+.|.+.. +.+.+..+.+.. ..++++|...+ .+......+.... .+.+.+..+-.+ .+++.||
T Consensus 108 i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~a~ 185 (247)
T PF01075_consen 108 IGINPGASWPSKRWPAEKWAELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISRAD 185 (247)
T ss_dssp EEEE---SSGGGS--HHHHHHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHTSS
T ss_pred EEEeecCCCccccCCHHHHHHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhcCC
Confidence 4556676567776554 667776665543 77888888766 2333344443332 233446555444 9999999
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++|-+ ++.++= =|.|+|+|+|+-=.+.
T Consensus 186 ~~I~~---Dtg~~H--lA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 186 LVIGN---DTGPMH--LAAALGTPTVALFGPT 212 (247)
T ss_dssp EEEEE---SSHHHH--HHHHTT--EEEEESSS
T ss_pred EEEec---CChHHH--HHHHHhCCEEEEecCC
Confidence 99975 443333 3778999999874433
No 166
>PLN02167 UDP-glycosyltransferase family protein
Probab=85.73 E-value=10 Score=36.08 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=48.4
Q ss_pred eEEecCCCCHHHHhhhCC--EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----cc-c-cccCCCeEee---------
Q 023072 106 VRVYPGRDHADLIFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----ND-F-FKQFPNCRTY--------- 168 (287)
Q Consensus 106 ~~v~g~~~~~~~~~~~ad--v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e-~-i~~~~~g~l~--------- 168 (287)
..+.+..++.+ ++.... .||. -+--.+++||+++|+|+|+-..-+ +. . +..-..|..+
T Consensus 342 g~v~~w~PQ~~-iL~h~~vg~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~ 416 (475)
T PLN02167 342 GLVCGWAPQVE-ILAHKAIGGFVS----HCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYG 416 (475)
T ss_pred eeeeccCCHHH-HhcCcccCeEEe----eCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccC
Confidence 34556666665 776644 4542 333458899999999999987744 22 2 2222345332
Q ss_pred --cCHHHHHHHHHHHHhCC
Q 023072 169 --DDRNGFVEATLKALAEE 185 (287)
Q Consensus 169 --~d~~~l~~~i~~ll~~~ 185 (287)
-+.+++++++.+++.++
T Consensus 417 ~~~~~~~l~~av~~~m~~~ 435 (475)
T PLN02167 417 EIVKADEIAGAVRSLMDGE 435 (475)
T ss_pred CcccHHHHHHHHHHHhcCC
Confidence 16789999999999763
No 167
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=83.81 E-value=29 Score=33.07 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=49.0
Q ss_pred ceEEecCCCCHHHHhhhC--CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----c-ccccc-CCCeEee-------c
Q 023072 105 VVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQ-FPNCRTY-------D 169 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~a--dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~-e~i~~-~~~g~l~-------~ 169 (287)
.+.+.+..++.+ ++... ++||. .+--.+++||+++|+|+|+-..-+ + ..+.+ -..|.-. -
T Consensus 344 g~~v~~w~PQ~~-vL~h~~v~~fvt----H~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~ 418 (477)
T PLN02863 344 GLVIRGWAPQVA-ILSHRAVGAFLT----HCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVP 418 (477)
T ss_pred CEEecCCCCHHH-HhcCCCcCeEEe----cCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCc
Confidence 345568888766 77764 55543 344568999999999999987744 2 22222 2344333 1
Q ss_pred CHHHHHHHHHHHHh
Q 023072 170 DRNGFVEATLKALA 183 (287)
Q Consensus 170 d~~~l~~~i~~ll~ 183 (287)
+.+++.+++.+++.
T Consensus 419 ~~~~v~~~v~~~m~ 432 (477)
T PLN02863 419 DSDELARVFMESVS 432 (477)
T ss_pred CHHHHHHHHHHHhh
Confidence 67899999998874
No 168
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=83.04 E-value=19 Score=34.36 Aligned_cols=77 Identities=16% Similarity=0.055 Sum_probs=52.9
Q ss_pred eEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccc-cCCCeEee----c--CHHH
Q 023072 106 VRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTY----D--DRNG 173 (287)
Q Consensus 106 ~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~-~~~~g~l~----~--d~~~ 173 (287)
+.+.+..++.+ ++....+-.+- +.+--++++||+.+|+|+|+-..-+ ...+. .-..|... . +.++
T Consensus 340 ~vv~~W~PQ~~-iL~h~~vg~Fi--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~ 416 (481)
T PLN02992 340 FVVPSWAPQAE-ILAHQAVGGFL--THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSK 416 (481)
T ss_pred EEEeecCCHHH-HhCCcccCeeE--ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHH
Confidence 44558888777 88887763332 3444578999999999999988744 22332 22345333 1 7889
Q ss_pred HHHHHHHHHhCC
Q 023072 174 FVEATLKALAEE 185 (287)
Q Consensus 174 l~~~i~~ll~~~ 185 (287)
+.+++.+++.++
T Consensus 417 l~~av~~vm~~~ 428 (481)
T PLN02992 417 IEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHhcCC
Confidence 999999999874
No 169
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.52 E-value=11 Score=36.85 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=86.6
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCc-CHHHHHHHHHhcCC-ceEE-ecC-CCCHH--HHhhhCCEE
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE-DFNQIQEAAEKLKI-VVRV-YPG-RDHAD--LIFHDYKVF 125 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~l-~~~v-~g~-~~~~~--~~~~~adv~ 125 (287)
|+|..--.-+|=-...++.|..+.+..|+-.|++.--.. -...++..+..+|+ ..++ +.. ....| .-+.-+||.
T Consensus 760 vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~ 839 (966)
T KOG4626|consen 760 VVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVC 839 (966)
T ss_pred EEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhhhc
Confidence 444443344566678899999999999987777664321 23788888888888 3344 333 33333 667778998
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC-c-----cccccCCCe-EeecCHHHHHHHHHHHHhCCC
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-N-----DFFKQFPNC-RTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~-----e~i~~~~~g-~l~~d~~~l~~~i~~ll~~~~ 186 (287)
+-+-..-| -+|-+|.+.+|+|+|+-.... . ..+..-.-| ++..+.++..+.-.++.++.+
T Consensus 840 LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~ 906 (966)
T KOG4626|consen 840 LDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKE 906 (966)
T ss_pred ccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHH
Confidence 87655544 456789999999999865432 1 111111112 556688888888888777644
No 170
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=82.22 E-value=11 Score=31.26 Aligned_cols=90 Identities=13% Similarity=0.021 Sum_probs=53.9
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC---ceEEecCC-CCHH-HHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~~~v~g~~-~~~~-~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|..|+.-+..-. .-++.++|..+. ...+++.+.+.+. ..+++|+. .... .-+..=|+++..... .-.
T Consensus 44 kT~~~L~~A~~~i~~i~-~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~-~~~ 121 (196)
T TIGR01012 44 KTDERLRVAAKFLVRIE-PEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPR-ADH 121 (196)
T ss_pred HHHHHHHHHHHHHHHhh-CCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCc-ccc
Confidence 33444444444443333 557899998765 4456777777665 33566664 2222 334444666554322 235
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
.++.||..+|+|+|+--.
T Consensus 122 ~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 122 QALKEASEVGIPIVALCD 139 (196)
T ss_pred HHHHHHHHcCCCEEEEee
Confidence 889999999999998654
No 171
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=81.76 E-value=2.8 Score=31.94 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=31.8
Q ss_pred CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 113 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 113 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++.++++..+|++|-.|..+..---+-.++..|+|+|..-+|.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 4445888889999999988887777888899999999987776
No 172
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=81.67 E-value=11 Score=33.47 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=55.0
Q ss_pred EEecccccCHH--HHHHHHHHHHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCC
Q 023072 55 IGKMVWSKGYK--ELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPS 129 (287)
Q Consensus 55 vG~~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps 129 (287)
.|.-.+.|.+. .+.+.+..+.+. +..+++. |...+.+..++..+... .+.+.|..+-.+ .+++.||++|-.
T Consensus 185 ~~~s~~~k~Wp~e~~a~li~~l~~~--~~~ivl~~G~~~e~~~~~~i~~~~~-~~~l~g~~sL~elaali~~a~l~I~n- 260 (322)
T PRK10964 185 HATTRDDKHWPEAHWRELIGLLAPS--GLRIKLPWGAEHEEQRAKRLAEGFP-YVEVLPKLSLEQVARVLAGAKAVVSV- 260 (322)
T ss_pred eCCCcccccCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHccCC-cceecCCCCHHHHHHHHHhCCEEEec-
Confidence 34323445443 566666666433 5677776 65445444444443322 344556665455 999999999974
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++-+ +==|.|+|+|+|+-=.+.
T Consensus 261 --DSGp--~HlA~A~g~p~valfGpt 282 (322)
T PRK10964 261 --DTGL--SHLTAALDRPNITLYGPT 282 (322)
T ss_pred --CCcH--HHHHHHhCCCEEEEECCC
Confidence 4333 333778999999865444
No 173
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=80.37 E-value=29 Score=30.54 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=69.5
Q ss_pred EEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhc-------------------CCceEEecCCC
Q 023072 53 YYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-------------------KIVVRVYPGRD 113 (287)
Q Consensus 53 ~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-------------------~l~~~v~g~~~ 113 (287)
+|+||..-+||+..+++.-++..+. +++.-.+-|-......+. +.+. +..+.++|..-
T Consensus 187 ~yigR~Tt~kG~~~mfD~h~~~lK~-~~~~t~~~GierS~A~~~--i~d~~~~~~y~~~~~~~~~~~~pN~~~~v~~~Yi 263 (355)
T PF11440_consen 187 RYIGRQTTWKGPRRMFDLHEKILKP-AGFKTIMEGIERSPAKIS--IKDHGIPYEYYPKLDCDEPKPAPNSPVPVYGPYI 263 (355)
T ss_dssp EEE--SSGGG-HHHHHHHHHHTTTT-TT-EEEEE---SSTHHHH--HHHTT--EEEE-CTGGGG---SSS--EEEESS--
T ss_pred eeeeeeeeecCcHHHhhhHHHhcCC-cchhHHhhhhhcCCceee--eecCCcccccCccccccCcccCCCCcceecchhh
Confidence 6999999999999999998887665 778877778533322211 1111 11345566665
Q ss_pred CHH--HHhhhCCEEEcCCCC------CcchHHHHHHHhcCC-eEEeecCCC-ccc------cccCCCeEee-c--CHHHH
Q 023072 114 HAD--LIFHDYKVFLNPSTT------DVVCTTTAEALAMGK-IVVCANHPS-NDF------FKQFPNCRTY-D--DRNGF 174 (287)
Q Consensus 114 ~~~--~~~~~adv~v~ps~~------E~~~~~~~EAma~G~-PVV~s~~~~-~e~------i~~~~~g~l~-~--d~~~l 174 (287)
..| +.|+++-.....+.. +.+-.+-+|..|||+ ||.-...|. ..+ +.+.+.|.++ + |.++-
T Consensus 264 ~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~r~~~D~~~~~~~~~~~I~~De~dle~T 343 (355)
T PF11440_consen 264 RSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENNRFTLDGTRYIDHPYSAIYFDENDLEST 343 (355)
T ss_dssp HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHSB-TTTSSBGGSS--S-EEE-TTSHHHH
T ss_pred hHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccceeeecCceeeccCcceeEeccchHHHH
Confidence 566 777777665544432 447789999999999 555554454 332 2222345443 3 77777
Q ss_pred HHHHHHHHhC
Q 023072 175 VEATLKALAE 184 (287)
Q Consensus 175 ~~~i~~ll~~ 184 (287)
.+.|.++.++
T Consensus 344 ~ekl~E~a~~ 353 (355)
T PF11440_consen 344 VEKLIEVANN 353 (355)
T ss_dssp HHHHHHHHT-
T ss_pred HHHHHHHhcc
Confidence 7777777654
No 174
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=78.72 E-value=14 Score=33.24 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=57.2
Q ss_pred EEEEEe-cccccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc-----eEEecCCCCHH--HHhhh
Q 023072 52 AYYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-----VRVYPGRDHAD--LIFHD 121 (287)
Q Consensus 52 i~~vG~-~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~-----~~v~g~~~~~~--~~~~~ 121 (287)
++..|. ..+.|.+. .+.+.+..+.+ .++++++.|+..|.+..++..+..+.. +.+.|..+-.+ .+++.
T Consensus 184 ~i~pga~~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~ 261 (348)
T PRK10916 184 GFCPGAEFGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAA 261 (348)
T ss_pred EEeCCCCCccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHh
Confidence 334443 23566543 45555555542 367888899877766555555443321 12235554444 99999
Q ss_pred CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 122 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 122 adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
|+++|-. ++-++= =|.|+|+|+|+-=.+
T Consensus 262 a~l~I~n---DTGp~H--lAaA~g~P~valfGp 289 (348)
T PRK10916 262 CKAIVTN---DSGLMH--VAAALNRPLVALYGP 289 (348)
T ss_pred CCEEEec---CChHHH--HHHHhCCCEEEEECC
Confidence 9999874 443333 377889999975443
No 175
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=77.66 E-value=24 Score=30.97 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeC--CcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHH
Q 023072 64 YKELLELLDDHQKELAGLEVDLYGN--GEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 139 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~G~--g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~ 139 (287)
+..+.+++..+.++. +.+++++.. ..|.+..+++...+.....+....+-.+ .+++.|+++|-...+ .++
T Consensus 190 ~~~l~~~l~~l~~~~-g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~RlH-----~~I 263 (298)
T TIGR03609 190 LLRLLRALDRLQRDT-GAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRLH-----ALI 263 (298)
T ss_pred HHHHHHHHHHHHHhh-CCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEechH-----HHH
Confidence 556777777776553 455655542 3455555566555544344543333333 789999987765443 467
Q ss_pred HHHhcCCeEEeecCC
Q 023072 140 EALAMGKIVVCANHP 154 (287)
Q Consensus 140 EAma~G~PVV~s~~~ 154 (287)
=|+.+|+|+|+-...
T Consensus 264 ~A~~~gvP~i~i~y~ 278 (298)
T TIGR03609 264 LAAAAGVPFVALSYD 278 (298)
T ss_pred HHHHcCCCEEEeecc
Confidence 799999999987543
No 176
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=75.99 E-value=20 Score=32.31 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=57.0
Q ss_pred cEEEEEecccccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCC-ce-EEecCCCCHH--HHhhhC
Q 023072 51 GAYYIGKMVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKI-VV-RVYPGRDHAD--LIFHDY 122 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l-~~-~v~g~~~~~~--~~~~~a 122 (287)
.++..|.-.+.|.+. .+.+.+..+.+. +.+++++|...+ .+..++..+.... .+ .+.|..+-.+ .+++.|
T Consensus 186 i~i~pga~~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 186 VVIQPTARQIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred EEEecCCCccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 345556544566544 566666666432 578888876433 2223444433221 22 2346665455 999999
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+++|-. ++-++=+ |.|+|+|+|+-=.+.
T Consensus 264 ~l~v~n---DSGp~Hl--AaA~g~P~v~lfGpt 291 (352)
T PRK10422 264 QLFIGV---DSAPAHI--AAAVNTPLICLFGAT 291 (352)
T ss_pred CEEEec---CCHHHHH--HHHcCCCEEEEECCC
Confidence 999874 4434433 568899999865443
No 177
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=74.57 E-value=33 Score=26.96 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---cccc--
Q 023072 93 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFF-- 159 (287)
Q Consensus 93 ~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i-- 159 (287)
+.+++.+++++..+.|+..-...+ +.++.+ .+.++|.-+-.++.++.+|+ ++++|+|=-.... +|.+
T Consensus 33 ~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK13015 33 ALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHISNVHAREAFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcCCccccccccc
Confidence 345666677777777763322223 444433 36788988888899999998 5789998655433 5533
Q ss_pred ----ccCCCeEeec-CHHHHHHHHHHHHh
Q 023072 160 ----KQFPNCRTYD-DRNGFVEATLKALA 183 (287)
Q Consensus 160 ----~~~~~g~l~~-d~~~l~~~i~~ll~ 183 (287)
.....|.+.. -.+...-++..+++
T Consensus 113 ~S~is~~~~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK13015 113 HSYVSAIADGVICGLGTEGYRLALRRLAT 141 (146)
T ss_pred cccccCceeEEEeeCCHHHHHHHHHHHHH
Confidence 3334455554 55655555555543
No 178
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=73.55 E-value=34 Score=30.67 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=55.7
Q ss_pred EEEEEecccccCH--HHHHHHHHHHHHhcCCeEEEEEeCCc--CHHHHHHHHHhcCCc-e-EEecCCCCHH--HHhhhCC
Q 023072 52 AYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIV-V-RVYPGRDHAD--LIFHDYK 123 (287)
Q Consensus 52 i~~vG~~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~-~-~v~g~~~~~~--~~~~~ad 123 (287)
++..|.-.+.|.+ +.+.+.+..+.+. +..++++|... +.+..++..+..+.. + .+.|..+-.+ .+++.|+
T Consensus 185 ~i~p~a~~~~K~Wp~e~~~~l~~~l~~~--~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~ 262 (344)
T TIGR02201 185 VIQPTSRWFFKCWDNDRFSALIDALHAR--GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHAR 262 (344)
T ss_pred EEeCCCCccccCCCHHHHHHHHHHHHhC--CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCC
Confidence 4445543455543 4555555555433 57888888654 222344444433322 2 2246555445 9999999
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
++|-. ++-++=+ |.|+|+|+|+-=.+
T Consensus 263 l~Vs~---DSGp~Hl--AaA~g~p~v~Lfgp 288 (344)
T TIGR02201 263 LFIGV---DSVPMHM--AAALGTPLVALFGP 288 (344)
T ss_pred EEEec---CCHHHHH--HHHcCCCEEEEECC
Confidence 99975 5534433 77889999986433
No 179
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=73.17 E-value=18 Score=31.23 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=53.1
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCH-HHHhhhCCEEEcCCCCCcc
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHA-DLIFHDYKVFLNPSTTDVV 134 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~-~~~~~~adv~v~ps~~E~~ 134 (287)
.|=+..|..|..-+..-...-.++++|..+. ...+.+.+...+.. .+++|+. ... ...+..=|++|+..- -.-
T Consensus 52 ~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~pGtlTN~~~~~f~~P~llIV~Dp-~~d 130 (249)
T PTZ00254 52 AKTWEKLKLAARVIAAIENPADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTPGTFTNQIQKKFMEPRLLIVTDP-RTD 130 (249)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccCCCCCCccccccCCCCEEEEeCC-Ccc
Confidence 3444455555544433212345778888765 44566677766652 3555553 222 133344466555432 223
Q ss_pred hHHHHHHHhcCCeEEeecC
Q 023072 135 CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 135 ~~~~~EAma~G~PVV~s~~ 153 (287)
..++.||..+|+|||+-=.
T Consensus 131 ~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 131 HQAIREASYVNIPVIALCD 149 (249)
T ss_pred hHHHHHHHHhCCCEEEEec
Confidence 5889999999999999654
No 180
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=72.62 E-value=40 Score=26.51 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHHh-cCCeEEeecCCC---cccc--
Q 023072 93 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEALA-MGKIVVCANHPS---NDFF-- 159 (287)
Q Consensus 93 ~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAma-~G~PVV~s~~~~---~e~i-- 159 (287)
+.+++.+.+.+..+.|+..-...+ +.++.+ .+.++|.-+-..+.++.+|++ .++|+|=-.... +|.+
T Consensus 33 ~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiSNi~aRE~fR~ 112 (146)
T PRK05395 33 ALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLSNIHAREEFRH 112 (146)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 345556677777777763333233 555554 267889888888999999984 789998655533 5544
Q ss_pred ----ccCCCeEeec-CHHHHHHHHHHHHh
Q 023072 160 ----KQFPNCRTYD-DRNGFVEATLKALA 183 (287)
Q Consensus 160 ----~~~~~g~l~~-d~~~l~~~i~~ll~ 183 (287)
.....|.+.. -.+...-++..+++
T Consensus 113 ~S~is~~a~G~I~G~G~~gY~lAl~al~~ 141 (146)
T PRK05395 113 HSYISDVAVGVICGFGADGYLLALEALAE 141 (146)
T ss_pred cccccccceEEEeeCCHHhHHHHHHHHHH
Confidence 3333455554 55555555555543
No 181
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=72.53 E-value=25 Score=25.85 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=50.6
Q ss_pred HhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 76 KELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
...++++++-+=+ .+.+..+..+++++.. ++ .+.++++. ..|+.+..+....-.-.+.+++..|++|++-..
T Consensus 21 ~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~--~~---~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP 94 (120)
T PF01408_consen 21 RSSPDFEVVAVCD-PDPERAEAFAEKYGIP--VY---TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKP 94 (120)
T ss_dssp HTTTTEEEEEEEC-SSHHHHHHHHHHTTSE--EE---SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESS
T ss_pred hcCCCcEEEEEEe-CCHHHHHHHHHHhccc--ch---hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcC
Confidence 3346676653322 2446666777777765 33 33556777 578888877777777788999999999999875
Q ss_pred CC
Q 023072 154 PS 155 (287)
Q Consensus 154 ~~ 155 (287)
-+
T Consensus 95 ~~ 96 (120)
T PF01408_consen 95 LA 96 (120)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 182
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=71.94 E-value=31 Score=28.80 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCHH-HHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHAD-LIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~~-~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|..|+.-+... ..-+++++|..+. ...+++.+.+.+.. .+++|+. .... .-+..=|++|..... .-.
T Consensus 50 kT~~~L~~A~~~i~~~-~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~-~~~ 127 (204)
T PRK04020 50 KTDERIRIAAKFLSRY-EPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPR-GDA 127 (204)
T ss_pred HHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCc-ccH
Confidence 4444555555555443 3457888898765 34567777776653 2455654 2222 223333555443322 236
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
.++.||.-+|.|+|+--.
T Consensus 128 ~AI~EA~kl~IP~IaivD 145 (204)
T PRK04020 128 QAVKEAIEVGIPVVALCD 145 (204)
T ss_pred HHHHHHHHhCCCEEEEEe
Confidence 899999999999999654
No 183
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.86 E-value=79 Score=29.33 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=95.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeC-CcC------HHHHHHHHHhcCCceEE--e-cCCCCHH----
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-GED------FNQIQEAAEKLKIVVRV--Y-PGRDHAD---- 116 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g~~------~~~l~~~~~~~~l~~~v--~-g~~~~~~---- 116 (287)
.+=|.|.....+-+....+.+.+.+++ ++.++|+-+ |.. .+++.+..+...-+..+ . ...-+..
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke--~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKE--NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhc--CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 477888888888899999999988766 678888833 322 33455554444433222 2 2222222
Q ss_pred -HHhhhCCE--EEcCCCCCc-----chHHHHHHHhcCCeEEeecCCC-ccccccCC-CeEe---e--cCHHHHHHHHHHH
Q 023072 117 -LIFHDYKV--FLNPSTTDV-----VCTTTAEALAMGKIVVCANHPS-NDFFKQFP-NCRT---Y--DDRNGFVEATLKA 181 (287)
Q Consensus 117 -~~~~~adv--~v~ps~~E~-----~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~-~g~l---~--~d~~~l~~~i~~l 181 (287)
.+=...|+ .|++ ..+| -.++.. .|.++|||--.+|. .+.+..+. .-++ . .|.+.|.+.+.++
T Consensus 234 ~aFk~~vdvg~vIlT-KlDGhakGGgAlSaV--aaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev 310 (483)
T KOG0780|consen 234 RAFKETVDVGAVILT-KLDGHAKGGGALSAV--AATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEV 310 (483)
T ss_pred HHHHHhhccceEEEE-ecccCCCCCceeeeh--hhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHH
Confidence 33333455 3333 3332 333444 46799999887766 44444432 1122 1 2999999999999
Q ss_pred HhCCCCCccHHHH-hcCCHHHHHHHHHHHHhc
Q 023072 182 LAEEPALPTEAQR-HQLSWESATERFLQVAEL 212 (287)
Q Consensus 182 l~~~~~~~~~~~~-~~~sw~~~~~~~~~~~~~ 212 (287)
..++...+-.+.. -+|+...+.+++..+..+
T Consensus 311 ~~~d~~el~~kl~~gkFtlrd~y~Qfq~imkm 342 (483)
T KOG0780|consen 311 GKDDAKELVEKLKQGKFTLRDFYDQFQNIMKM 342 (483)
T ss_pred hhhhHHHHHHHHHhCCccHHHHHHHHHHHHhh
Confidence 8554444444433 389999999999888875
No 184
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=71.44 E-value=72 Score=29.91 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeC-------Cc-CHHHHHHHHHhcCC--ceEEe-cCCCCHH--HHhhhCCEEEcCCCCC
Q 023072 66 ELLELLDDHQKELAGLEVDLYGN-------GE-DFNQIQEAAEKLKI--VVRVY-PGRDHAD--LIFHDYKVFLNPSTTD 132 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~G~-------g~-~~~~l~~~~~~~~l--~~~v~-g~~~~~~--~~~~~adv~v~ps~~E 132 (287)
.+.+++..+.++ +.+++++-. +. |.....++.+.+.. +.++. ...+..+ .+++.||++|-.-.+
T Consensus 261 ~la~~i~~Li~~--g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~RlH- 337 (426)
T PRK10017 261 AFAGVVNRIIDE--GYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGTRLH- 337 (426)
T ss_pred HHHHHHHHHHHC--CCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEecch-
Confidence 445666666544 455555532 22 33334445555443 23443 4444555 899999998864332
Q ss_pred cchHHHHHHHhcCCeEEeecCCC--ccccccCC-CeEeec----CHHHHHHHHHHHHhCCC
Q 023072 133 VVCTTTAEALAMGKIVVCANHPS--NDFFKQFP-NCRTYD----DRNGFVEATLKALAEEP 186 (287)
Q Consensus 133 ~~~~~~~EAma~G~PVV~s~~~~--~e~i~~~~-~g~l~~----d~~~l~~~i~~ll~~~~ 186 (287)
.++=|+++|+|+|+-.... ..++.+-. ..++.+ +.+++.+.+.+++++.+
T Consensus 338 ----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~ 394 (426)
T PRK10017 338 ----SAIISMNFGTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLP 394 (426)
T ss_pred ----HHHHHHHcCCCEEEeeehHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHH
Confidence 4677999999999987744 44443321 113222 77889999999998744
No 185
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=70.54 E-value=28 Score=30.81 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecC-CCCHH-HHhhhCCEEEcCCCCCcchHHHHHH
Q 023072 64 YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RDHAD-LIFHDYKVFLNPSTTDVVCTTTAEA 141 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~-~~~~~-~~~~~adv~v~ps~~E~~~~~~~EA 141 (287)
.+...+|+..+.+..++..++|+++ |.+.+++..........+.+. -+..+ .+|+.||.+|.+. -+||+=.. .
T Consensus 190 ~~Yy~~Ai~~i~~~~~~~~f~ifSD--D~~w~k~~l~~~~~~~~~~~~~~~~~Dl~lms~C~~~Iisn--STFswW~a-~ 264 (298)
T PF01531_consen 190 KDYYKKAIEYIREKVKNPKFFIFSD--DIEWCKENLKFSNGDVYFSGNNSPYEDLYLMSQCKHFIISN--STFSWWAA-Y 264 (298)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHhhcCCcEEEECCCCHHHHHHHHHhCCcEEECC--ChHHHHHH-H
Confidence 4677899999998888999999998 556666655544434444454 33334 7899999999874 34444331 2
Q ss_pred HhcCCeEEee
Q 023072 142 LAMGKIVVCA 151 (287)
Q Consensus 142 ma~G~PVV~s 151 (287)
++-|-.++..
T Consensus 265 L~~~~~i~i~ 274 (298)
T PF01531_consen 265 LSKNDKIVIA 274 (298)
T ss_pred HCCCCCEEEE
Confidence 3445444443
No 186
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.37 E-value=33 Score=30.69 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=42.2
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
.++--|++.+ -+-|+-.-||+..|+|.|.+..|- -++..+ .|+++. |+.+..+...+.+.++.
T Consensus 248 ~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~pGkll~vdk~lie--~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 248 SLLYYATLVI-----GAGGTMAREAALLGTPAISCYPGKLLAVDKYLIE--KGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred HHHhhhheee-----cCCchHHHHHHHhCCceEEecCCccccccHHHHh--cCceeecCCHHHHHHHHHHHhhchh
Confidence 3444555543 233566779999999999998541 233333 677765 88888887778777654
No 187
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=70.01 E-value=31 Score=30.81 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=55.7
Q ss_pred HHhcCCeEE--EEEeCCcC-----HHHHHHHHHhcCCceEEe--cCCCCHH----HHhhhCCEEEcCCCC---CcchHHH
Q 023072 75 QKELAGLEV--DLYGNGED-----FNQIQEAAEKLKIVVRVY--PGRDHAD----LIFHDYKVFLNPSTT---DVVCTTT 138 (287)
Q Consensus 75 ~~~~~~~~l--~i~G~g~~-----~~~l~~~~~~~~l~~~v~--g~~~~~~----~~~~~adv~v~ps~~---E~~~~~~ 138 (287)
+...|+++= +++..+.. .++++..++..|+.+.-. ....+.. .+..+.|++..|... -++...+
T Consensus 153 k~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~ 232 (322)
T COG2984 153 KALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLL 232 (322)
T ss_pred HHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHH
Confidence 334688763 45566653 567888888889876554 3333333 555778998887553 3466678
Q ss_pred HHHHhcCCeEEeecCCC
Q 023072 139 AEALAMGKIVVCANHPS 155 (287)
Q Consensus 139 ~EAma~G~PVV~s~~~~ 155 (287)
-+|....+|+++++.+.
T Consensus 233 ~~a~~~kiPli~sd~~~ 249 (322)
T COG2984 233 QVANKAKIPLIASDTSS 249 (322)
T ss_pred HHHHHhCCCeecCCHHH
Confidence 89999999999998744
No 188
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=70.00 E-value=32 Score=27.37 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=56.6
Q ss_pred EEEEEecccccCHHHHHHHH------HHHHHhcCCeEEEEE-eCCcC--HHHHHHHHHhcCCceEEecCCCCHHHHhhhC
Q 023072 52 AYYIGKMVWSKGYKELLELL------DDHQKELAGLEVDLY-GNGED--FNQIQEAAEKLKIVVRVYPGRDHADLIFHDY 122 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~------~~l~~~~~~~~l~i~-G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~a 122 (287)
++-+|.-. ++.||.+. ..+.+. .=.+|+|- |.|.- .+......+..++.+..+...+...+.++.|
T Consensus 7 FVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~-G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~A 81 (170)
T KOG3349|consen 7 FVTVGTTS----FDDLISCVLSEEFLQELQKR-GFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSA 81 (170)
T ss_pred EEEecccc----HHHHHHHHcCHHHHHHHHHc-CccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhc
Confidence 45566533 67777543 333322 33455554 87731 2233322234555666666667767899999
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
|+.|. .+-.-+++|-+..|+|.|..-.
T Consensus 82 dlVIs----HAGaGS~letL~l~KPlivVvN 108 (170)
T KOG3349|consen 82 DLVIS----HAGAGSCLETLRLGKPLIVVVN 108 (170)
T ss_pred cEEEe----cCCcchHHHHHHcCCCEEEEeC
Confidence 99975 3345689999999999887643
No 189
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=66.73 E-value=43 Score=30.53 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=61.0
Q ss_pred EEEEeCCcC---HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC--CCcc
Q 023072 83 VDLYGNGED---FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH--PSND 157 (287)
Q Consensus 83 l~i~G~g~~---~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~--~~~e 157 (287)
++|.|.--. .+.+...+.+.+ +++++.+..+.+.++..|+..|.-+-+ +|+.|-++.|||.+.-.. |+.|
T Consensus 254 ~ivtGP~MP~~~r~~l~~~A~~~p-~i~I~~f~~~~~~ll~gA~~vVSm~GY----NTvCeILs~~k~aLivPr~~p~eE 328 (400)
T COG4671 254 LIVTGPFMPEAQRQKLLASAPKRP-HISIFEFRNDFESLLAGARLVVSMGGY----NTVCEILSFGKPALIVPRAAPREE 328 (400)
T ss_pred EEEeCCCCCHHHHHHHHHhcccCC-CeEEEEhhhhHHHHHHhhheeeecccc----hhhhHHHhCCCceEEeccCCCcHH
Confidence 444465433 333444333333 677888888888999999998864322 678999999999877665 3333
Q ss_pred cccc----CCCe----Eeec--CHHHHHHHHHHHHhCC
Q 023072 158 FFKQ----FPNC----RTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 158 ~i~~----~~~g----~l~~--d~~~l~~~i~~ll~~~ 185 (287)
-... .+-| +..+ +++.++++|..+++.+
T Consensus 329 QliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 329 QLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred HHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 1111 0122 2222 7888888888888753
No 190
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=66.24 E-value=34 Score=27.40 Aligned_cols=66 Identities=6% Similarity=-0.023 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC-CCHHHHhhhCCEEEcCC
Q 023072 63 GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPS 129 (287)
Q Consensus 63 g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~-~~~~~~~~~adv~v~ps 129 (287)
.+...++++..+....-+.-+++-|+++ ...+-..+++.|..+.++|.. ...+.+.+.||-|+...
T Consensus 90 Dv~laIDame~~~~~~iD~~vLvSgD~D-F~~Lv~~lre~G~~V~v~g~~~~ts~~L~~acd~FI~L~ 156 (160)
T TIGR00288 90 DVRMAVEAMELIYNPNIDAVALVTRDAD-FLPVINKAKENGKETIVIGAEPGFSTALQNSADIAIILG 156 (160)
T ss_pred cHHHHHHHHHHhccCCCCEEEEEeccHh-HHHHHHHHHHCCCEEEEEeCCCCChHHHHHhcCeEEeCC
Confidence 4667788887775443455444446654 566777778889888888743 34448999999998643
No 191
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=65.56 E-value=32 Score=21.83 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=41.4
Q ss_pred eEEEEEeCC--cCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 81 LEVDLYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 81 ~~l~i~G~g--~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+.+.+.|.- .+...+.+++..+|.. +....+ ..++.+|.+.....-. ...|...|+|||..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~--v~~~~~------~~~thvI~~~~~~~~~--~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK--VTSSVS------KKTTHVIVGSDAGPKK--LLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE--Eecccc------CCceEEEECCCCCchH--HHHHHHcCCeEecHH
Confidence 567888874 6788899999988864 332222 3456666654433222 788899999998764
No 192
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=65.44 E-value=29 Score=28.00 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCC-CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhc
Q 023072 67 LLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLNPSTTDVVCTTTAEALAM 144 (287)
Q Consensus 67 ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~-~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~ 144 (287)
.++.++++.....+.+++|+|.|.- ...+.....+.+..+.+.... ++..+.+..||++|..+-... +.-.|.+.-
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~--ii~~~~~~~ 108 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPG--LVKGDMVKP 108 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCCCCc--eecHHHccC
Confidence 3444444433345789999999874 343555555666665555443 233389999999998766533 222233333
Q ss_pred CCeEEeecCCC
Q 023072 145 GKIVVCANHPS 155 (287)
Q Consensus 145 G~PVV~s~~~~ 155 (287)
| .+.-|.+.
T Consensus 109 ~--~viIDla~ 117 (168)
T cd01080 109 G--AVVIDVGI 117 (168)
T ss_pred C--eEEEEccC
Confidence 4 44445544
No 193
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=64.99 E-value=16 Score=26.32 Aligned_cols=70 Identities=20% Similarity=0.165 Sum_probs=43.9
Q ss_pred EEEEeCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHH--hcCCeEEeecC
Q 023072 83 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCANH 153 (287)
Q Consensus 83 l~i~G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAm--a~G~PVV~s~~ 153 (287)
++++|.|-. ...+++.+++.++...+. ......++....+|+++......- -..-++.. ..|+||+.-+.
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~-~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAY-MLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHH-HHHHHHHHhhhcCCCEEEeCh
Confidence 455577754 456788888888887774 344444456678898887654422 23334433 45789998664
No 194
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=64.53 E-value=21 Score=33.83 Aligned_cols=68 Identities=13% Similarity=0.017 Sum_probs=49.0
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCC-eEEeecCCC--ccccccCC-CeEeecCHHHHHHHHHHHHhCC
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-IVVCANHPS--NDFFKQFP-NCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~-PVV~s~~~~--~e~i~~~~-~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
+.++.+..++.|.-.+...-.++||+..|| |||-++.-. -..+.+-. -+..++ .+++-+.+.+.|...
T Consensus 339 ~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~i 410 (464)
T KOG1021|consen 339 EGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLSI 410 (464)
T ss_pred HHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHhc
Confidence 799999999999999999999999999999 999998822 33333322 233444 555555556666653
No 195
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=63.74 E-value=73 Score=27.78 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+++++..+-+.. .+..++.+++++.. ....+.++++...|+++..+......-...+++..|++|++...+
T Consensus 30 ~~~el~aV~dr~-~~~a~~~a~~~g~~----~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 30 PGLTLSAVAVRD-PQRHADFIWGLRRP----PPVVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred CCeEEEEEECCC-HHHHHHHHHhcCCC----cccCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecch
Confidence 677777665543 35556666665521 123445567888999988877766666678889999999986443
No 196
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=63.58 E-value=78 Score=26.02 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=44.5
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCHHH-------------------------HhhhCCEEEcCC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHADL-------------------------IFHDYKVFLNPS 129 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~~~-------------------------~~~~adv~v~ps 129 (287)
+-++.++|..+. ..-+++.+.+.+.. .++.|+. ..... ....=|++|...
T Consensus 56 ~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~~~Pdlviv~~ 135 (193)
T cd01425 56 GGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNWKTIRKSIKRLKKLEKEKLEKNLGGIKDMFRLPDLVIVLD 135 (193)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCEEEEeC
Confidence 457788887764 33455555555442 3445553 33221 122337766654
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
..+ -..++.||..+|.|+|+--...
T Consensus 136 ~~~-~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 136 PRK-EHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred Ccc-chHHHHHHHHcCCCEEEEecCC
Confidence 332 3788999999999999976543
No 197
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=62.05 E-value=61 Score=28.99 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=45.0
Q ss_pred HhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH------HHhh-----hCC--EEEcCCCCCcchHHHHHHH
Q 023072 76 KELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD------LIFH-----DYK--VFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~------~~~~-----~ad--v~v~ps~~E~~~~~~~EAm 142 (287)
+.+|+..+.|-|...-....+...+.+|..+.=.|+.+..| ..++ ..+ ..+..+-|+- +-.++|+|
T Consensus 73 ~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~GwDy-~~~~~e~~ 151 (337)
T COG2247 73 ELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVYGWDY-ADALMELM 151 (337)
T ss_pred hhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEecccc-HHHHHHHH
Confidence 44676644444443335666677777887655567776666 3332 223 2333333332 22899999
Q ss_pred hcCC-eEEeecCC
Q 023072 143 AMGK-IVVCANHP 154 (287)
Q Consensus 143 a~G~-PVV~s~~~ 154 (287)
--|+ ||+.++..
T Consensus 152 k~~~~p~~~~n~~ 164 (337)
T COG2247 152 KEGIVPVILKNTS 164 (337)
T ss_pred hcCcceeEecccc
Confidence 9887 77777653
No 198
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=61.90 E-value=59 Score=30.01 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=65.5
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHH
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~ 138 (287)
.++++.+.+...++ .| +++.+.+......++.... +..++++.+.+...++... .|++|+..--..---.+
T Consensus 36 ~~n~~~l~~q~~~f---~p--~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~pt 108 (385)
T PRK05447 36 GKNVELLAEQAREF---RP--KYVVVADEEAAKELKEALA--AAGIEVLAGEEGLCELAALPEADVVVAAIVGAAGLLPT 108 (385)
T ss_pred CCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHhhc--cCCceEEEChhHHHHHhcCCCCCEEEEeCcCcccHHHH
Confidence 56777777766555 23 4566666444444544332 1234465444434455554 58888876654333668
Q ss_pred HHHHhcCCeEEeecCCC----ccccc---cCCCeEeec-CHHHHHHHHHHHHhCC
Q 023072 139 AEALAMGKIVVCANHPS----NDFFK---QFPNCRTYD-DRNGFVEATLKALAEE 185 (287)
Q Consensus 139 ~EAma~G~PVV~s~~~~----~e~i~---~~~~g~l~~-d~~~l~~~i~~ll~~~ 185 (287)
++|+..|++|.+.+-+. -+.+. ...++-+.+ |.+- .+|.+++...
T Consensus 109 l~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh--~ai~q~l~~~ 161 (385)
T PRK05447 109 LAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEH--SAIFQCLPGE 161 (385)
T ss_pred HHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHH--HHHHHHhcCC
Confidence 99999999999977533 22221 111234444 5554 4566666654
No 199
>PLN03015 UDP-glucosyl transferase
Probab=61.67 E-value=70 Score=30.43 Aligned_cols=73 Identities=15% Similarity=0.050 Sum_probs=45.0
Q ss_pred EecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----c-ccc-ccCCCeEee--------cCHHH
Q 023072 108 VYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFF-KQFPNCRTY--------DDRNG 173 (287)
Q Consensus 108 v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~-e~i-~~~~~g~l~--------~d~~~ 173 (287)
+.+..++.+ ++....+..+-+ .+--++++||+++|+|+|+-..-+ + ..+ ..-..|.-+ -+.++
T Consensus 339 v~~W~PQ~~-vL~h~~vg~fvt--H~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~ 415 (470)
T PLN03015 339 VTQWAPQVE-ILSHRSIGGFLS--HCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREE 415 (470)
T ss_pred EEecCCHHH-HhccCccCeEEe--cCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccCHHH
Confidence 346666655 666555433322 233468899999999999987743 1 122 111233222 17789
Q ss_pred HHHHHHHHHh
Q 023072 174 FVEATLKALA 183 (287)
Q Consensus 174 l~~~i~~ll~ 183 (287)
+.+++++++.
T Consensus 416 i~~~v~~lm~ 425 (470)
T PLN03015 416 VASLVRKIVA 425 (470)
T ss_pred HHHHHHHHHc
Confidence 9999999986
No 200
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=61.65 E-value=76 Score=24.79 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCceEEecCCCCHH--HHhhhC----C-EEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---cccc--
Q 023072 93 NQIQEAAEKLKIVVRVYPGRDHAD--LIFHDY----K-VFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFF-- 159 (287)
Q Consensus 93 ~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a----d-v~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i-- 159 (287)
+.+++.+.+++..+.++..-...+ +.++.+ | +.++|.-+-..+..+.+|+ ++++|+|=-.... +|.+
T Consensus 31 ~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiSNi~aRE~fR~ 110 (140)
T cd00466 31 ALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHISNIHAREEFRH 110 (140)
T ss_pred HHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecCCccccccccc
Confidence 345566667777777763322223 444444 3 6788888877899999998 5789998655533 5544
Q ss_pred ----ccCCCeEeec-CHHHHHHHHHHHH
Q 023072 160 ----KQFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 160 ----~~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
.....|.+.. -.+...-++..++
T Consensus 111 ~S~is~~~~G~I~G~G~~gY~lAl~~~~ 138 (140)
T cd00466 111 HSVISPVATGVIAGLGADGYRLALEALA 138 (140)
T ss_pred ccccccceeEEEEeCCHHHHHHHHHHHH
Confidence 3333455554 6666666666654
No 201
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.56 E-value=28 Score=25.43 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=43.9
Q ss_pred EEEEeCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCC-cchHHHHHHHhcCCeEEeec
Q 023072 83 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTD-VVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 83 l~i~G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E-~~~~~~~EAma~G~PVV~s~ 152 (287)
++++|.|-. -+.+++.+++.|+.+.+. ......+..+..+|+++.....- -+.-.--.+-..|+||..-+
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 455577754 467888999999887775 33333346788899887754432 22222223445688998765
No 202
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=61.14 E-value=38 Score=29.24 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=33.0
Q ss_pred CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 113 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 113 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
.+.++++..+|+.+..|..+...-.+..|+..|+|||+...+
T Consensus 52 ~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG 93 (257)
T PRK00048 52 DDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTG 93 (257)
T ss_pred CCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 344466778999998887777777788999999999987544
No 203
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=60.67 E-value=1e+02 Score=25.84 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.3
Q ss_pred hCCEE-EcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 121 DYKVF-LNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 121 ~adv~-v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
..|.+ +.|...+...-.+-++...|+|||..+.+
T Consensus 55 ~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 55 GVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred cCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 34654 45666677777788899999999999887
No 204
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=60.49 E-value=67 Score=29.89 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEe-CCcCHHHHHHHHHhcCCceEE-ecCCCCHH---HHhhh--CCEEEcCCCCCcchHHH
Q 023072 66 ELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRV-YPGRDHAD---LIFHD--YKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~~~v-~g~~~~~~---~~~~~--adv~v~ps~~E~~~~~~ 138 (287)
.++-.++++++++|++.+++.- +.-..+..+ +.++..+.+ +-.+|... .+++. -|+.|+ ...|-||+.+
T Consensus 64 a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~---~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~l~Ii-~EtElWPnli 139 (419)
T COG1519 64 AALPLVRALRERFPDLRILVTTMTPTGAERAA---ALFGDSVIHQYLPLDLPIAVRRFLRKWRPKLLII-METELWPNLI 139 (419)
T ss_pred HHHHHHHHHHHhCCCCCEEEEecCccHHHHHH---HHcCCCeEEEecCcCchHHHHHHHHhcCCCEEEE-EeccccHHHH
Confidence 4445556667788999988884 433333333 344543333 33444443 55544 477665 3678899999
Q ss_pred HHHHhcCCeEEeecC
Q 023072 139 AEALAMGKIVVCANH 153 (287)
Q Consensus 139 ~EAma~G~PVV~s~~ 153 (287)
.|+-..|+|++.-|.
T Consensus 140 ~e~~~~~~p~~LvNa 154 (419)
T COG1519 140 NELKRRGIPLVLVNA 154 (419)
T ss_pred HHHHHcCCCEEEEee
Confidence 999999999998775
No 205
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=60.32 E-value=1e+02 Score=26.77 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=68.1
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEE-----------EEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHH
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVD-----------LYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLI 118 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~-----------i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~ 118 (287)
+++++...--...+.+++..+.+.+....+... .-|.|.+ ...+++.++++|+.+-.... ..+.+.+
T Consensus 26 ~~~IAGpc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l 105 (260)
T TIGR01361 26 PIVIAGPCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIV 105 (260)
T ss_pred EEEEEeCCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHH
Confidence 444555555567777777777776443221110 1122222 45577788888876433222 2333444
Q ss_pred hhhCCEEEcCCCCCcchHHHHHH-HhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 119 FHDYKVFLNPSTTDVVCTTTAEA-LAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 119 ~~~adv~v~ps~~E~~~~~~~EA-ma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
...+|++-.+|..=. -..++++ ...|+||+.+..-. .+.+++..++..+.+...
T Consensus 106 ~~~~d~lkI~s~~~~-n~~LL~~~a~~gkPVilk~G~~-------------~t~~e~~~Ave~i~~~Gn 160 (260)
T TIGR01361 106 AEYADILQIGARNMQ-NFELLKEVGKQGKPVLLKRGMG-------------NTIEEWLYAAEYILSSGN 160 (260)
T ss_pred HhhCCEEEECccccc-CHHHHHHHhcCCCcEEEeCCCC-------------CCHHHHHHHHHHHHHcCC
Confidence 455798988887522 3445544 46799999886421 146666666666665433
No 206
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=60.14 E-value=26 Score=25.26 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=44.5
Q ss_pred EEEEeCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHH--HHhcCCeEEeecC
Q 023072 83 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAE--ALAMGKIVVCANH 153 (287)
Q Consensus 83 l~i~G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~E--Ama~G~PVV~s~~ 153 (287)
++++|.|-. .+.+++.+++.++...+. ......+..+..+|+++......- -..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~-~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRY-MLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHH-HHHHHHHHhccCCCcEEEcCh
Confidence 456677764 456888888888887774 444444456788898777544322 233333 4457889987764
No 207
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=59.96 E-value=95 Score=31.32 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=88.9
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeCCc--C---HHHHHHHH----H----hcCC----ceEE-
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGNGE--D---FNQIQEAA----E----KLKI----VVRV- 108 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~g~--~---~~~l~~~~----~----~~~l----~~~v- 108 (287)
.++-+-+++.-||...=+.++.++..++|. +.++.+..+. + .++++..+ . +++- .+++
T Consensus 278 lilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~ 357 (732)
T KOG1050|consen 278 LILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSL 357 (732)
T ss_pred eEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEe
Confidence 355555899999998888888888877764 4444443322 1 12222211 1 1111 2222
Q ss_pred ecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcC----CeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHH
Q 023072 109 YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG----KIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATL 179 (287)
Q Consensus 109 ~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G----~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~ 179 (287)
+-.++..+ +++.-+|+.+..+..+|..++.+|+.+|. .+.|.+.--| .+...+ ...++. |.++++.+|.
T Consensus 358 ~~~~~~~~l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl~d--~aivvnpw~~~~~~~~i~ 435 (732)
T KOG1050|consen 358 LKDLPFLELLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTLED--AAIVVNPWDGDEFAILIS 435 (732)
T ss_pred eccCCHHHHhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccccc--cCEEECCcchHHHHHHHH
Confidence 23445555 88999999999999999999999999985 4566665544 444434 224443 8999999999
Q ss_pred HHHhCCCC
Q 023072 180 KALAEEPA 187 (287)
Q Consensus 180 ~ll~~~~~ 187 (287)
.+++.+..
T Consensus 436 ~al~~s~~ 443 (732)
T KOG1050|consen 436 KALTMSDE 443 (732)
T ss_pred HHhhcCHH
Confidence 99998776
No 208
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=59.58 E-value=61 Score=29.18 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=45.3
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecC-CC-------------CHHHHhhhCCEEEc--CCCCCcchHHHHHHHh
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG-RD-------------HADLIFHDYKVFLN--PSTTDVVCTTTAEALA 143 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~-~~-------------~~~~~~~~adv~v~--ps~~E~~~~~~~EAma 143 (287)
+-++-|+|-|.=-..+.+.++.+|.++..+.. .+ ..+++++.||++++ |...|+.++-=.|.++
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a 221 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELA 221 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHh
Confidence 45788999888777888889999988777633 11 12389999999764 6677876655444443
No 209
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=59.37 E-value=75 Score=24.42 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=53.1
Q ss_pred cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHH
Q 023072 60 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTT 137 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~ 137 (287)
-.+|++.|.+...++. | +.+.+.+....+.+++.....+...+++.+.+...++.. .+|+.|+...--.-=.+
T Consensus 32 a~~n~~~L~~q~~~f~---p--~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~p 106 (129)
T PF02670_consen 32 AGSNIEKLAEQAREFK---P--KYVVIADEEAYEELKKALPSKGPGIEVLSGPEGLEELAEEPEVDIVVNAIVGFAGLKP 106 (129)
T ss_dssp ESSTHHHHHHHHHHHT------SEEEESSHHHHHHHHHHHHHTTSSSEEEESHHHHHHHHTHTT-SEEEE--SSGGGHHH
T ss_pred cCCCHHHHHHHHHHhC---C--CEEEEcCHHHHHHHHHHhhhcCCCCEEEeChHHHHHHhcCCCCCEEEEeCcccchHHH
Confidence 3789999999888772 3 346666654455666655444556777655444444444 57888886544332345
Q ss_pred HHHHHhcCCeEEeec
Q 023072 138 TAEALAMGKIVVCAN 152 (287)
Q Consensus 138 ~~EAma~G~PVV~s~ 152 (287)
.++|+-.|+-+--.|
T Consensus 107 t~~Ai~~gk~iaLAN 121 (129)
T PF02670_consen 107 TLAAIKAGKDIALAN 121 (129)
T ss_dssp HHHHHHTTSEEEE--
T ss_pred HHHHHHCCCeEEEec
Confidence 788998988776554
No 210
>PRK04531 acetylglutamate kinase; Provisional
Probab=59.12 E-value=42 Score=31.14 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=65.3
Q ss_pred cEEEEEe-cccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCceEEecC--CCCHH--HHhhhCCE
Q 023072 51 GAYYIGK-MVWSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPG--RDHAD--LIFHDYKV 124 (287)
Q Consensus 51 ~i~~vG~-~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~--~~~~~--~~~~~adv 124 (287)
.|+-+|. +.. ...+.+++.++.+... ..+++|+ |.|+ .+.+..++.++.-++..+ +.+.+ ++...+=.
T Consensus 39 ~VIKiGG~~l~-~~~~~l~~dla~L~~~--G~~~VlVHGggp---qI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~ 112 (398)
T PRK04531 39 AVIKVGGAVLR-DDLEALASSLSFLQEV--GLTPIVVHGAGP---QLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQ 112 (398)
T ss_pred EEEEEChHHhh-cCHHHHHHHHHHHHHC--CCcEEEEECCCH---HHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHH
Confidence 4666774 322 4577888888887654 4566666 8775 455667788887677633 34444 22222111
Q ss_pred EEcCCCCCcchHHHHHHHhcCC-eEEeecCCCccccccCCCeEeec-CHHHHHHHHHHHHhC
Q 023072 125 FLNPSTTDVVCTTTAEALAMGK-IVVCANHPSNDFFKQFPNCRTYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAma~G~-PVV~s~~~~~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~ 184 (287)
-++....+ .+-+++..|. |||++ .+. ..+|.+++ |.++++.++...|.-
T Consensus 113 ~vn~~lv~----~I~~~L~~g~IPVlsp-lg~------~~~G~~~NvnaD~vA~~LA~aL~a 163 (398)
T PRK04531 113 RSNLDLVE----AVESSLRAGSIPVIAS-LGE------TPSGQILNINADVAANELVSALQP 163 (398)
T ss_pred HHHHHHHH----HHHHHHHCCCEEEEeC-cEE------CCCCcEEEECHHHHHHHHHHHcCC
Confidence 11110001 1556778887 55543 331 12454555 778888888777764
No 211
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=57.80 E-value=87 Score=27.03 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=70.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC------HHHHHHHHHhcCCceEEecCC--CCHH--HHhh
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED------FNQIQEAAEKLKIVVRVYPGR--DHAD--LIFH 120 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l~~~v~g~~--~~~~--~~~~ 120 (287)
+++|+|-+.-.-|...+-+-+..++.++ ...|+|+..... -+++-+...+.|.++...|.- ++.+ +++.
T Consensus 2 riLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dviT~GNH~wd~~ei~~~i~ 80 (266)
T COG1692 2 RILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEKIYKELLEAGADVITLGNHTWDQKEILDFID 80 (266)
T ss_pred eEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEEecccccccchHHHHHhh
Confidence 5899999988899999999999998774 577888854211 244455566778776556663 5555 8899
Q ss_pred hCCEEEcCCCC-C---cchHHHHHHHhcCCeEEeecCCC
Q 023072 121 DYKVFLNPSTT-D---VVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~adv~v~ps~~-E---~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
.++.+|-|.-+ + |.|..+++ .-|+-+-.++.-|
T Consensus 81 ~~~~ilRP~N~p~~~~G~G~~~f~--~ng~ki~V~Nl~G 117 (266)
T COG1692 81 NADRILRPANYPDGTPGKGSRIFK--INGKKLAVINLMG 117 (266)
T ss_pred cccceeccCCCCCCCCcceEEEEE--eCCcEEEEEEeec
Confidence 99999988765 3 34555555 4455555555544
No 212
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=57.60 E-value=1.7e+02 Score=27.57 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred cccCHHHHHHHHHHHHHh--cC--------CeEEEEEeCCc---CHHHHHHHHHhcCCceEE-ecCCCCHH--HHhhhCC
Q 023072 60 WSKGYKELLELLDDHQKE--LA--------GLEVDLYGNGE---DFNQIQEAAEKLKIVVRV-YPGRDHAD--LIFHDYK 123 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~--~~--------~~~l~i~G~g~---~~~~l~~~~~~~~l~~~v-~g~~~~~~--~~~~~ad 123 (287)
...|++..++++-..... .| +-.+-|+|.-. +..+++++.+++|+.+.. ++.-...+ .-+..|.
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~ 246 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLLEKLGIRVLATITGDSRYAEVQTAHRAK 246 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcccCc
Confidence 446887777766543221 11 23577777532 467899999999998765 44433333 4455555
Q ss_pred EEEcCCCCCcchHHHHHHH--hcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 124 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAm--a~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+-|..+ ...+..+.+.| -.|+|.+... + + | .++.+++.+.|.+++..
T Consensus 247 lniv~~--~~~~~~~a~~L~e~~GiP~~~~~-~----~-----G--~~~T~~~L~~Ia~~lg~ 295 (456)
T TIGR01283 247 LNMVQC--SKSMINLARKMEEKYGIPYFEGS-F----Y-----G--IEDTSKALRDIADLFGD 295 (456)
T ss_pred EEEEEC--HhHHHHHHHHHHHHcCCCEEecC-C----C-----c--HHHHHHHHHHHHHHhCC
Confidence 554432 22346677777 5799998521 1 1 1 13567777777777764
No 213
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=55.19 E-value=53 Score=24.01 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCc--CHHHHHHHHHhcCCceE
Q 023072 68 LELLDDHQKELAGLEVDLYGNGE--DFNQIQEAAEKLKIVVR 107 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~ 107 (287)
...+.++.+..|+.+++++|+.- |.+-..+.+++++.++.
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ 93 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRIL 93 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEE
Confidence 34555666677999999999843 46667778888876543
No 214
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=55.13 E-value=1.3e+02 Score=28.12 Aligned_cols=42 Identities=19% Similarity=0.103 Sum_probs=30.2
Q ss_pred cEEEEEecc-cccCHHHHHHH-HHHHHHhcCCeEEEEEeCCcCH
Q 023072 51 GAYYIGKMV-WSKGYKELLEL-LDDHQKELAGLEVDLYGNGEDF 92 (287)
Q Consensus 51 ~i~~vG~~~-~~Kg~~~ll~a-~~~l~~~~~~~~l~i~G~g~~~ 92 (287)
.|+.+|... ...|-+.++.+ +..+++..|++.++++-.-|+.
T Consensus 2 ~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P~~ 45 (426)
T PRK10017 2 KLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVS 45 (426)
T ss_pred eEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCccc
Confidence 366666543 45788877766 6677888999999999766653
No 215
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.91 E-value=59 Score=26.95 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=54.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
.++.+|.= ......+..+.+. ..+++++.... .+.+.+++.. + .+.+... ...+..+..+|+++..+-
T Consensus 12 ~vLVIGgG------~va~~ka~~Ll~~--ga~V~VIs~~~-~~~l~~l~~~-~-~i~~~~~-~~~~~~l~~adlViaaT~ 79 (202)
T PRK06718 12 RVVIVGGG------KVAGRRAITLLKY--GAHIVVISPEL-TENLVKLVEE-G-KIRWKQK-EFEPSDIVDAFLVIAATN 79 (202)
T ss_pred EEEEECCC------HHHHHHHHHHHHC--CCeEEEEcCCC-CHHHHHHHhC-C-CEEEEec-CCChhhcCCceEEEEcCC
Confidence 57777741 2233334444443 35677775422 2455555543 1 2333322 222345788999888777
Q ss_pred CCcchHHHHHHHhcCCeEEeecCCC
Q 023072 131 TDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 131 ~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
.+..-..+.+....|++|-+.|.+.
T Consensus 80 d~elN~~i~~~a~~~~lvn~~d~~~ 104 (202)
T PRK06718 80 DPRVNEQVKEDLPENALFNVITDAE 104 (202)
T ss_pred CHHHHHHHHHHHHhCCcEEECCCCc
Confidence 7666777777778899998888765
No 216
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=54.35 E-value=1.8e+02 Score=26.78 Aligned_cols=111 Identities=19% Similarity=0.153 Sum_probs=66.5
Q ss_pred cccCHHHHHHHHHHHHHh------cCCeEEEEEeCC---cCHHHHHHHHHhcCCceEE-ecC-CCCHH-HHhhhCCEEEc
Q 023072 60 WSKGYKELLELLDDHQKE------LAGLEVDLYGNG---EDFNQIQEAAEKLKIVVRV-YPG-RDHAD-LIFHDYKVFLN 127 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~------~~~~~l~i~G~g---~~~~~l~~~~~~~~l~~~v-~g~-~~~~~-~~~~~adv~v~ 127 (287)
...|++..++++...... .++-.+.|+|.- .+..+++++.+++|+.+.. ++. .+-.+ .-+..|.+-|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~~~~A~~niv 213 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGDGTVDELRRAHRAKLNLV 213 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhhCccCCEEEE
Confidence 456788888876654321 123457777763 2568899999999997765 443 33344 44555665554
Q ss_pred CCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 128 PSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 128 ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
.+.. ++..+.+.|. .|+|.+... + .| .++.+++.+.|.+++..
T Consensus 214 ~~~~--~~~~~a~~L~~r~GiP~~~~~-p---------~G--~~~t~~~l~~l~~~lg~ 258 (406)
T cd01967 214 HCSR--SMNYLAREMEERYGIPYMEVN-F---------YG--FEDTSESLRKIAKFFGD 258 (406)
T ss_pred EChH--HHHHHHHHHHHhhCCCEEEec-C---------Cc--HHHHHHHHHHHHHHhCC
Confidence 3332 3455555553 799998532 1 11 13567777777777664
No 217
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=54.15 E-value=11 Score=24.55 Aligned_cols=16 Identities=38% Similarity=0.418 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCeEEee
Q 023072 136 TTTAEALAMGKIVVCA 151 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s 151 (287)
-.+.|++.+|.||+|-
T Consensus 15 ~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 15 DKIAESAVMGTPVVAL 30 (58)
T ss_pred hHHHHHHhcCceeEee
Confidence 4689999999999985
No 218
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=53.55 E-value=1.1e+02 Score=27.91 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=44.2
Q ss_pred hcCCe-EEEEEeCCcCHHHHHHHHHh-cCCceEEe-cCCCCHH---HHhhhCCEEEcCCCCCcchHHHH-HHHhcCCeEE
Q 023072 77 ELAGL-EVDLYGNGEDFNQIQEAAEK-LKIVVRVY-PGRDHAD---LIFHDYKVFLNPSTTDVVCTTTA-EALAMGKIVV 149 (287)
Q Consensus 77 ~~~~~-~l~i~G~g~~~~~l~~~~~~-~~l~~~v~-g~~~~~~---~~~~~adv~v~ps~~E~~~~~~~-EAma~G~PVV 149 (287)
+..+. ++++.|. +.+.+++++.+ .+.++... -...+.+ ++++.+|++|+.+-.. ++..++ -|+..|++.|
T Consensus 19 ~~~~~~~v~va~r--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yv 95 (386)
T PF03435_consen 19 RRGPFEEVTVADR--NPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYV 95 (386)
T ss_dssp CTTCE-EEEEEES--SHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEE
T ss_pred cCCCCCcEEEEEC--CHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCee
Confidence 33445 7777776 44666666654 34455553 3344333 8999999999876544 555555 5678899999
Q ss_pred eecC
Q 023072 150 CANH 153 (287)
Q Consensus 150 ~s~~ 153 (287)
-+..
T Consensus 96 D~~~ 99 (386)
T PF03435_consen 96 DTSY 99 (386)
T ss_dssp ESS-
T ss_pred ccch
Confidence 8543
No 219
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.49 E-value=1.7e+02 Score=27.36 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=69.6
Q ss_pred cEEEEEe--c--ccccCHHHHHHHHHHH-HHh-cCCeEEEEEeC---CcCHHHHHHHHHhcCCceEEecC----------
Q 023072 51 GAYYIGK--M--VWSKGYKELLELLDDH-QKE-LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRVYPG---------- 111 (287)
Q Consensus 51 ~i~~vG~--~--~~~Kg~~~ll~a~~~l-~~~-~~~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v~g~---------- 111 (287)
.++.+.. + ....|++..++++-+. ... .++-.+-|+|. ..|.++++++.+++|+.+.+++.
T Consensus 120 ~vi~v~t~gF~g~~~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~ 199 (429)
T cd03466 120 KIIPASTPGYGGTHVEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILLPDTSETLDGPFW 199 (429)
T ss_pred cEEEEECCCCcccHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeEEecCccccccCCCC
Confidence 3556543 2 3336888888776543 221 12334667763 33578899999999998766432
Q ss_pred ----------CCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHH
Q 023072 112 ----------RDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEAT 178 (287)
Q Consensus 112 ----------~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i 178 (287)
..-.+ .-+..|++-|.-+.+...+..+.++|. +|+|.+....+. |+ .+.+.+.+.|
T Consensus 200 ~~~~~~~~~g~~~~~i~~~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~~P~---------G~--~~t~~~l~~l 268 (429)
T cd03466 200 GEYHRLPSGGTPISEIKGMGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYRLPLPI---------GL--RATDEFMSLL 268 (429)
T ss_pred CCcceeCCCCCCHHHHHhhccCcEEEEEccCccchHHHHHHHHHHHCCCeeecCCCc---------Ch--HHHHHHHHHH
Confidence 12222 344455554444444455777777774 899977654431 11 2445566666
Q ss_pred HHHHh
Q 023072 179 LKALA 183 (287)
Q Consensus 179 ~~ll~ 183 (287)
.+++.
T Consensus 269 ~~~~g 273 (429)
T cd03466 269 SKLTG 273 (429)
T ss_pred HHHHC
Confidence 66554
No 220
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.84 E-value=80 Score=26.87 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=22.2
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
|++|.....|. -.+++||.-+++|+|+--...
T Consensus 175 D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN 206 (251)
T KOG0832|consen 175 DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTN 206 (251)
T ss_pred ceeEecCcccc-cHHHHHHHHhCCCeEEEecCC
Confidence 44444444444 578999999999999865433
No 221
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=51.72 E-value=1.2e+02 Score=26.77 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=41.6
Q ss_pred CHHHHHHHHHhcCCceEEecCCCCHHHHhhhC--CEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 91 DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 91 ~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~a--dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+.+..++.+++++.. -.+.+.+++++.- |+++..+....=.-.++.|+..|++|+|-+.
T Consensus 39 ~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKP 99 (342)
T COG0673 39 DPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKP 99 (342)
T ss_pred CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCC
Confidence 456788888888865 2234445677764 7887776665434445999999999999875
No 222
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=50.81 E-value=92 Score=23.88 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=41.1
Q ss_pred ccccCHHHH--HHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEE
Q 023072 59 VWSKGYKEL--LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVF 125 (287)
Q Consensus 59 ~~~Kg~~~l--l~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~ 125 (287)
...|+.|.- ++++........+.-+++-|+++- ..+-+.+++.|.++.+.+...+.. ++...||-|
T Consensus 78 ~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df-~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d~f 146 (149)
T cd06167 78 SGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF-VPLVERLRELGKRVIVVGFEAKTSRELRKAADRF 146 (149)
T ss_pred CcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH-HHHHHHHHHcCCEEEEEccCccChHHHHHhCCcc
Confidence 455666654 477776666545665555577654 444455667788888876653333 778888744
No 223
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.63 E-value=82 Score=27.13 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=16.2
Q ss_pred hHHHHHHHhcCCeEEeecC
Q 023072 135 CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 135 ~~~~~EAma~G~PVV~s~~ 153 (287)
-.++.||--+|.|||+--.
T Consensus 169 ~iAv~EA~klgIPVvAlvD 187 (252)
T COG0052 169 KIAVKEANKLGIPVVALVD 187 (252)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 3889999999999998643
No 224
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.00 E-value=41 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.284 Sum_probs=26.0
Q ss_pred HhhhCCEEEcCCCCCcchHHH-HHHHhcCCeEEeecCCC-cccc
Q 023072 118 IFHDYKVFLNPSTTDVVCTTT-AEALAMGKIVVCANHPS-NDFF 159 (287)
Q Consensus 118 ~~~~adv~v~ps~~E~~~~~~-~EAma~G~PVV~s~~~~-~e~i 159 (287)
.+..+++++..+-.+...-.+ .+|-+.|+||-+.|.+. .+++
T Consensus 57 ~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 57 DLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp GCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCSEE
T ss_pred HHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCeEE
Confidence 467778777665554444444 45566999999999877 4443
No 225
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=48.95 E-value=1.5e+02 Score=24.55 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=26.1
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.+++.++++|-...+ ..+=|+++|+|+|+-+.
T Consensus 253 ~~~~~~~~~Is~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 253 ELISQADLVISMRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred HHHhcCCEEEecCCH-----HHHHHHHcCCCEEEEec
Confidence 999999999876554 35679999999998654
No 226
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=48.53 E-value=2.1e+02 Score=26.01 Aligned_cols=91 Identities=21% Similarity=0.185 Sum_probs=59.7
Q ss_pred cccCHHHHHHHHHHHHHh------cCCeEEEEEeCCc----CHHHHHHHHHhcCCceEEec-C-CCCHH-HHhhhCCEEE
Q 023072 60 WSKGYKELLELLDDHQKE------LAGLEVDLYGNGE----DFNQIQEAAEKLKIVVRVYP-G-RDHAD-LIFHDYKVFL 126 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~------~~~~~l~i~G~g~----~~~~l~~~~~~~~l~~~v~g-~-~~~~~-~~~~~adv~v 126 (287)
+..|++..++++.+.... ...-.+.|+|..+ +..+++++.++.|+++..+. . .+-.+ .-+..|.+-|
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~nl 205 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNL 205 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCchhhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcEEE
Confidence 446888888887755432 1133577777643 56889999999999887753 3 33334 4555666665
Q ss_pred cCCCCCcchHHHHHHHh--cCCeEEeec
Q 023072 127 NPSTTDVVCTTTAEALA--MGKIVVCAN 152 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma--~G~PVV~s~ 152 (287)
..+. -++..+.|.|. +|+|.+...
T Consensus 206 v~~~--~~g~~~a~~l~~~~g~p~~~~~ 231 (399)
T cd00316 206 VLCR--ESGLYLARYLEEKYGIPYILIN 231 (399)
T ss_pred EecH--hHHHHHHHHHHHHhCCCeEEeC
Confidence 5444 24666677774 899998875
No 227
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=48.07 E-value=2.1e+02 Score=25.87 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEE-------------EeCCcC-HHHHHHHHHhcCCceEEecC-CCCHH
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-------------YGNGED-FNQIQEAAEKLKIVVRVYPG-RDHAD 116 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-------------~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~ 116 (287)
+++++...--..-+.+++..+.+++..-+ +.. -|-|.+ ...+.+..+++|+.+..... ..+.+
T Consensus 94 ~~~IAGPCsiEs~e~~~~~A~~lk~~ga~--~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~ 171 (335)
T PRK08673 94 PVVIAGPCSVESEEQILEIARAVKEAGAQ--ILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVE 171 (335)
T ss_pred eEEEEecCccCCHHHHHHHHHHHHHhchh--hccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHH
Confidence 44455444445677788877777655322 221 122222 34566677788877433222 22233
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.+...+|++-.+|+.=..---+-++...|+||+.++.
T Consensus 172 ~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G 208 (335)
T PRK08673 172 LVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRG 208 (335)
T ss_pred HHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCC
Confidence 3334589998998863322345566678999999865
No 228
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=47.91 E-value=1.6e+02 Score=27.63 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=43.1
Q ss_pred eEEecCCCCHHHHhhhC--CEEEcCCCCCcchHHHHHHHhcCCeEEeecC-CC----cccccc-CCCeEeec---CHHHH
Q 023072 106 VRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEALAMGKIVVCANH-PS----NDFFKQ-FPNCRTYD---DRNGF 174 (287)
Q Consensus 106 ~~v~g~~~~~~~~~~~a--dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~-~~----~e~i~~-~~~g~l~~---d~~~l 174 (287)
+.+.+..++.+-++..- +.||. +-|++.+ +|++.+|+|+||-.. +. ...+.+ +..+.+.. +..++
T Consensus 337 V~~~~W~PQ~~lll~H~~v~~FvT---HgG~nSt-~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~ 412 (496)
T KOG1192|consen 337 VVLSKWAPQNDLLLDHPAVGGFVT---HGGWNST-LESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEEL 412 (496)
T ss_pred eEEecCCCcHHHhcCCCcCcEEEE---CCcccHH-HHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHH
Confidence 33346788777332222 33332 3445444 999999999997655 33 223333 22233222 33337
Q ss_pred HHHHHHHHhCCC
Q 023072 175 VEATLKALAEEP 186 (287)
Q Consensus 175 ~~~i~~ll~~~~ 186 (287)
..++..++.++.
T Consensus 413 ~~~~~~il~~~~ 424 (496)
T KOG1192|consen 413 LEAIKEILENEE 424 (496)
T ss_pred HHHHHHHHcChH
Confidence 888888887644
No 229
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=47.76 E-value=20 Score=26.50 Aligned_cols=41 Identities=12% Similarity=0.079 Sum_probs=29.9
Q ss_pred HHhhhCCEEEcCCCC----CcchHHHHHHHhcCCeEEeecCCCcc
Q 023072 117 LIFHDYKVFLNPSTT----DVVCTTTAEALAMGKIVVCANHPSND 157 (287)
Q Consensus 117 ~~~~~adv~v~ps~~----E~~~~~~~EAma~G~PVV~s~~~~~e 157 (287)
..++.||++|..-.. .|.+.-+-=|.|.|+||++-......
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 778899998764332 34555566788999999998776544
No 230
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=47.35 E-value=83 Score=24.53 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---ccccccC
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFFKQF 162 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i~~~ 162 (287)
.+++.+.+++..+.++..-...+ ++++.| ++.++|.-+-..+.++.+|+ +..+|+|=-.... +|.|.+.
T Consensus 33 ~~~~~a~~~g~~v~~~QSN~Eg~Lid~Ihea~~~~~~IvINpga~THTSvAlrDAi~av~iP~vEVHlSNihaRE~FRhh 112 (146)
T COG0757 33 DLEEEAAKLGVEVEFRQSNHEGELIDWIHEARGKAGDIVINPGAYTHTSVALRDAIAAVSIPVVEVHLSNIHAREEFRHH 112 (146)
T ss_pred HHHHHHHHcCceEEEEecCchHHHHHHHHHhhccCCeEEEcCccchhhHHHHHHHHHhcCCCEEEEEecCchhccccccc
Confidence 45556666777666653322222 444433 38999999988999999997 4678998665543 6655542
Q ss_pred ------CCeEeec-CHHHHHHHHHHHH
Q 023072 163 ------PNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 163 ------~~g~l~~-d~~~l~~~i~~ll 182 (287)
..|.++. -.....-++..+.
T Consensus 113 S~~s~~a~GvI~GlG~~GY~lAl~~l~ 139 (146)
T COG0757 113 SYTSPVAKGVICGLGAQGYLLALRALV 139 (146)
T ss_pred ccccchhceeEecCcHHHHHHHHHHHH
Confidence 2345554 5555444444443
No 231
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=45.87 E-value=88 Score=25.63 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=42.1
Q ss_pred EEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCC-----------cchHHHHHHHhcCCeEEee
Q 023072 83 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 83 l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E-----------~~~~~~~EAma~G~PVV~s 151 (287)
+..+|+..+...+..++...+..+.++....+ ...+|.+++|--.. .+--.+.++...|+||++.
T Consensus 3 ~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~----~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgi 78 (194)
T cd01750 3 VIRYPDISNFTDLDPLAREPGVDVRYVEVPEG----LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGI 78 (194)
T ss_pred eecCCCccCHHHHHHHHhcCCceEEEEeCCCC----CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEE
Confidence 34456555667777777777766666533322 45667777775431 2233467778889999886
Q ss_pred cCC
Q 023072 152 NHP 154 (287)
Q Consensus 152 ~~~ 154 (287)
=.|
T Consensus 79 C~G 81 (194)
T cd01750 79 CGG 81 (194)
T ss_pred CHH
Confidence 443
No 232
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=45.76 E-value=1.4e+02 Score=23.27 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---ccccc--
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFFK-- 160 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i~-- 160 (287)
.+++.+.+++..+.|+..-...+ +.++.+ .+.++|.-+-..+.++.+|+ +.++|+|=-.... +|.+.
T Consensus 32 ~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiSNi~aRE~fR~~ 111 (141)
T TIGR01088 32 IIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLSNVHAREEFRHH 111 (141)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 45556666676666653322222 444444 36788988888899999998 4799998655433 55443
Q ss_pred ----cCCCeEeec-CHHHHHHHHHHHH
Q 023072 161 ----QFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 161 ----~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
....|.+.. -.+...-++..++
T Consensus 112 S~is~~~~G~I~G~G~~gY~lAl~a~~ 138 (141)
T TIGR01088 112 SYTAPVAGGVIVGLGAQGYLLALRYLV 138 (141)
T ss_pred ccccccceEEEeecCHHHHHHHHHHHH
Confidence 333455554 5566655665554
No 233
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=45.60 E-value=1.9e+02 Score=25.10 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=22.0
Q ss_pred hCCEEE-cCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 121 DYKVFL-NPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 121 ~adv~v-~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
..|.+| .|...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~ 91 (303)
T cd01539 57 GVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence 356544 4544344445566778899999998764
No 234
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=45.31 E-value=75 Score=25.57 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=45.1
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC--------------CCHHHHhhhCCEEEc--CCCCCc---chHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLN--PSTTDV---VCTTTAE 140 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~--------------~~~~~~~~~adv~v~--ps~~E~---~~~~~~E 140 (287)
+-++-|+|-|.=-..+-+.++.+|.++.++... ...+++++.||++++ |...++ ++-..++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~ 115 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLA 115 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeee
Confidence 457777777766666667777777766555221 122278889999775 444444 5666777
Q ss_pred HHhcCCeEEeecCC
Q 023072 141 ALAMGKIVVCANHP 154 (287)
Q Consensus 141 Ama~G~PVV~s~~~ 154 (287)
.|--|.-+|-+..|
T Consensus 116 ~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 116 KMKPGAVLVNVARG 129 (178)
T ss_dssp TSTTTEEEEESSSG
T ss_pred ccccceEEEeccch
Confidence 77666655554433
No 235
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=45.12 E-value=80 Score=23.93 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=33.2
Q ss_pred cccCHHHHH--HHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC-CCHHHHhhhCCEEEc
Q 023072 60 WSKGYKELL--ELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-DHADLIFHDYKVFLN 127 (287)
Q Consensus 60 ~~Kg~~~ll--~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~-~~~~~~~~~adv~v~ 127 (287)
..|+.|..| +++....+..++.-+++.|+++-...++ .+++.|.++.+.+.. .....+.+.||-|+.
T Consensus 75 ~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~-~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~ 144 (146)
T PF01936_consen 75 GKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVR-KLRERGKRVIVVGAEDSASEALRSAADEFIS 144 (146)
T ss_dssp -S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHH-HHHHH--EEEEEE-GGGS-HHHHHHSSEEEE
T ss_pred ccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHH-HHHHcCCEEEEEEeCCCCCHHHHHhcCEEEe
Confidence 557777655 6666665554555555558866444444 455778888887732 222378889998864
No 236
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.51 E-value=2.1e+02 Score=24.87 Aligned_cols=100 Identities=9% Similarity=0.025 Sum_probs=61.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeC--------CcC------HHHHHHHHHhcCCceEEecC-CCCH
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN--------GED------FNQIQEAAEKLKIVVRVYPG-RDHA 115 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~--------g~~------~~~l~~~~~~~~l~~~v~g~-~~~~ 115 (287)
.++.++...--...+.+++..+.+++. .++++..|. +.+ ...+++..+++|+.+-.... ..+.
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~--g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~ 104 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKEL--GVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDV 104 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHc--CCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhH
Confidence 355555555556788888888888775 345555561 111 34577778888877433222 2233
Q ss_pred HHHhhhCCEEEcCCCC-CcchHHHHHHHhcCCeEEeecC
Q 023072 116 DLIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 116 ~~~~~~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+.+...+|++-.+|+. +.++ -+-++...|+||+.++.
T Consensus 105 ~~l~~~vd~~kIga~~~~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 105 EEVADYADMLQIGSRNMQNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHhCCEEEECcccccCHH-HHHHHhcCCCcEEEeCC
Confidence 3333447888888876 4432 34455678999998875
No 237
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=44.02 E-value=1.5e+02 Score=23.10 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHHh-cCCeEEeecCCC---cccccc-
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEALA-MGKIVVCANHPS---NDFFKQ- 161 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAma-~G~PVV~s~~~~---~e~i~~- 161 (287)
.+++.+.++|..+.|+..-...+ +.++.+ .+.++|.-+-..+.++.+|++ +++|+|=-.... +|.+.+
T Consensus 33 ~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~~~~P~vEVHiSNi~~RE~fR~~ 112 (140)
T PF01220_consen 33 KCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKAISIPVVEVHISNIHAREEFRHH 112 (140)
T ss_dssp HHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHCCTS-EEEEESS-GGGS-GGGG-
T ss_pred HHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHcCCCCEEEEEcCCcccccccccc
Confidence 35555666666665553322222 333332 456788888788999999984 688998766543 554433
Q ss_pred -----CCCeEeec-CHHHHHHHHHHH
Q 023072 162 -----FPNCRTYD-DRNGFVEATLKA 181 (287)
Q Consensus 162 -----~~~g~l~~-d~~~l~~~i~~l 181 (287)
...|.+.. -.+...-++..+
T Consensus 113 S~~s~~~~g~I~G~G~~gY~lAl~al 138 (140)
T PF01220_consen 113 SVISPVAVGVISGFGADGYLLALEAL 138 (140)
T ss_dssp -SSGGGSSEEEESSTTHHHHHHHHHH
T ss_pred cccccccEEEEEeCCHHHHHHHHHHH
Confidence 33555554 555555555544
No 238
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=43.62 E-value=1.2e+02 Score=28.03 Aligned_cols=147 Identities=15% Similarity=0.122 Sum_probs=79.1
Q ss_pred CeeeeCchhhhhccCCcEEeecc--CC--CCccccCcchHHHh--hc-CCC-CCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 3 FQVIRLSAATQEYANSIICNVHG--VN--PKFLEIGKKKKEQQ--QN-GTH-AFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 3 ~~Vi~lS~~~~~~~~~~i~vi~g--vd--~~~~~~~~~~~~~~--~~-~~~-~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
+.|+++++.++.+|-+.+.+..+ |. |.+-.......... .. ... ...+.+.||= .|..++..-=+.+..+
T Consensus 205 ~~iLVlD~~l~~~PwEsl~~l~~~~VsR~pSl~~l~~~~~~~~~~~~~~~~~~~~~~~~yvl--NP~gDL~~T~~~~~~~ 282 (383)
T PF03568_consen 205 HTILVLDKELQSFPWESLPCLRGQSVSRMPSLHFLRDLLKRHSNSRSPGYESKDPKRGFYVL--NPSGDLKRTEKRFEPF 282 (383)
T ss_pred CEEEEECcccccCchhhCccccCCeeEecChHHHHHHHHHHhhhhcccccccccccceEEEE--CCCCCHHHHHHHHHHH
Confidence 45778888888888766666522 22 11100000000000 00 000 0112355654 4777777777777777
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEE-ecC-CCCH--HHHh---hhCCEEEc-C--------CCCCcchHHH
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRV-YPG-RDHA--DLIF---HDYKVFLN-P--------STTDVVCTTT 138 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v-~g~-~~~~--~~~~---~~adv~v~-p--------s~~E~~~~~~ 138 (287)
.+....|+ -++|..|..+++.+.....++.+.+ ||+ ..+. ..+. ..+-.+++ . -.+|+.| ++
T Consensus 283 ~~~~~~w~-g~~g~~P~~~e~~~~l~~~dlf~Y~GHG~G~qy~~~~~i~~~~~~~~~lL~GCsS~~l~~~g~~~~~g-~~ 360 (383)
T PF03568_consen 283 FKSWKGWK-GIIGRAPTEEEFLQALTSSDLFLYCGHGSGEQYISGSTIQRLDCCAVSLLMGCSSGRLKEQGEFEPYG-TP 360 (383)
T ss_pred HhcccCCC-ceECCCCCHHHHHHHHHhCCeEEEecCCcHHHhCCHhhhccccccCceEEecCCcccccccCCCCCCC-cH
Confidence 66655566 6778888888888887777766544 433 1111 1122 12223332 1 1135554 46
Q ss_pred HHHHhcCCeEEeecC
Q 023072 139 AEALAMGKIVVCANH 153 (287)
Q Consensus 139 ~EAma~G~PVV~s~~ 153 (287)
+-+|.+|+|.|..+.
T Consensus 361 ~~yl~ag~p~vvg~L 375 (383)
T PF03568_consen 361 LSYLLAGCPLVVGNL 375 (383)
T ss_pred HHHHhcCChheEeec
Confidence 789999999988754
No 239
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=43.52 E-value=2.3e+02 Score=26.00 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=62.6
Q ss_pred cEEEEE-----ecccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcC--HHHHHHHHHhcCCceEEe-c--CCCCHH---
Q 023072 51 GAYYIG-----KMVWSKGYKELLELLDDHQKELAGLEVDLY-GNGED--FNQIQEAAEKLKIVVRVY-P--GRDHAD--- 116 (287)
Q Consensus 51 ~i~~vG-----~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~--~~~l~~~~~~~~l~~~v~-g--~~~~~~--- 116 (287)
.++|+| .....+|++.+++.++.|.+. ..|.|.-. |...- ..++....-.|...+.|. | +....|
T Consensus 248 g~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~-ak~tli~mrgH~Nv~GFnqv~~~e~GYpf~vdF~rG~prynPgE~s~ 326 (429)
T COG1029 248 GAIFVGLGLTSSRGKHRNVENAINLVKDLNEY-AKFTLIPMRGHYNVTGFNEVLSWETGYPFAVDFSRGYPRYNPGEFSA 326 (429)
T ss_pred ceEEEeeceeecccccccHHHHHHHHHHHhhh-ceEEEEEeccccccccccchhhhhhCCceeeecccCCcCCCcccccH
Confidence 577766 334578999999999988654 44555444 33221 334443434455555664 3 333323
Q ss_pred -HHhhhC--CE-EEcCCC-CCcchHHHHHHHhcCCeEEeecC
Q 023072 117 -LIFHDY--KV-FLNPST-TDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 -~~~~~a--dv-~v~ps~-~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++++.- |. +|..|- .-.||....+.|+ -+||||-|.
T Consensus 327 vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~-eIPvI~iDp 367 (429)
T COG1029 327 VDLLKRKEVDAALVIASDPGAHFPRDAVEHLA-EIPVICIDP 367 (429)
T ss_pred HHHHhccCCCeEEEEecCccccChHHHHHHhh-cCCEEEecC
Confidence 677654 44 444444 3669999999986 699999987
No 240
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=43.02 E-value=44 Score=30.68 Aligned_cols=139 Identities=12% Similarity=0.026 Sum_probs=74.9
Q ss_pred CCcchHHHHHHHhcCCeEEeecCCC-------------ccccccCCCeEeecCHHHHHHHHHHHHhCCCCCccHHHH--h
Q 023072 131 TDVVCTTTAEALAMGKIVVCANHPS-------------NDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQR--H 195 (287)
Q Consensus 131 ~E~~~~~~~EAma~G~PVV~s~~~~-------------~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~~~~~~~~--~ 195 (287)
.++.+-.+.++|+-+.|-..+-... .++..+....++++|.+++...+..+.++.........+ +
T Consensus 234 ~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~latdssKs~~kkdkR~q 313 (427)
T KOG2842|consen 234 PEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDLATDSSKSRAKKDRRVQ 313 (427)
T ss_pred ccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3445555677788888876654322 234455566688889999999999998887663333222 2
Q ss_pred cCCHHHHHHHHHHHHh-cccccccCCCCCCCcccccCc-hhHHhhHHHHHHH-HHHHhcccchhhhhccCCCCCCCCCHH
Q 023072 196 QLSWESATERFLQVAE-LDQAVVKKPSKSPSKHFASTS-LNLKKNMEEASAY-VHFLASGFETSRRAFGAIPGSLHPDEE 272 (287)
Q Consensus 196 ~~sw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 272 (287)
++... .+++.++ ...+....+....+-.+.+.. ....+.+.+.+-- |++.+.-++..|-+||-++.+..++..
T Consensus 314 r~~fr----~vl~~iee~~~pe~sVRfG~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg~~~~~l~~~ 389 (427)
T KOG2842|consen 314 RSVFR----DVLQTIEERDIPEESVRIGQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLGGPPRALDAA 389 (427)
T ss_pred HHHHH----HHHHHHhcccCchhheeecceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcCCCCCCcccc
Confidence 22222 2333333 111111111222222222222 2344444444433 445555588899999999765555543
Q ss_pred H
Q 023072 273 L 273 (287)
Q Consensus 273 ~ 273 (287)
-
T Consensus 390 ~ 390 (427)
T KOG2842|consen 390 F 390 (427)
T ss_pred h
Confidence 3
No 241
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=42.62 E-value=42 Score=24.83 Aligned_cols=42 Identities=26% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 68 LELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
.+.+..+....|+..++|+|.|.. ..++++..++.|+.+.+.
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m 86 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVM 86 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEE
Confidence 445555555667889999999875 467788888888777665
No 242
>PRK06487 glycerate dehydrogenase; Provisional
Probab=42.30 E-value=93 Score=27.79 Aligned_cols=73 Identities=16% Similarity=0.186 Sum_probs=48.7
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC--------CCHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhcCC
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMGK 146 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~--------~~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~G~ 146 (287)
+-++-|+|-|.=-..+.+.++.+|.++..+... ...+++++.||++++ |...|+ ++-..+..|--|.
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga 227 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA 227 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence 347889999886677888888888877655321 112389999999875 544455 6666777775555
Q ss_pred eEEeec
Q 023072 147 IVVCAN 152 (287)
Q Consensus 147 PVV~s~ 152 (287)
-+|-+.
T Consensus 228 ~lIN~a 233 (317)
T PRK06487 228 LLINTA 233 (317)
T ss_pred EEEECC
Confidence 555443
No 243
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=42.29 E-value=1.6e+02 Score=24.03 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhhhC--CEEEcCCCCCcchHH
Q 023072 64 YKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KVFLNPSTTDVVCTT 137 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~a--dv~v~ps~~E~~~~~ 137 (287)
+..+...+..+.+.+|+.++++...-+. .+..++.... ... .++-..|... .+++.. |++|.- ..|-+|.-
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-~v~-~~~~P~D~~~~~~rfl~~~~P~~~i~~-EtElWPnl 110 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-RVD-VQYLPLDFPWAVRRFLDHWRPDLLIWV-ETELWPNL 110 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-G-S-EEE---SSHHHHHHHHHHH--SEEEEE-S----HHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-CeE-EEEeCccCHHHHHHHHHHhCCCEEEEE-ccccCHHH
Confidence 4455556666677789999999976544 2333332221 112 2244455444 666654 666653 56889999
Q ss_pred HHHHHhcCCeEEeecC
Q 023072 138 TAEALAMGKIVVCANH 153 (287)
Q Consensus 138 ~~EAma~G~PVV~s~~ 153 (287)
+.+|-..|+|++.-|.
T Consensus 111 l~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 111 LREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHH-----S-EEEEEE
T ss_pred HHHHhhcCCCEEEEee
Confidence 9999999999998875
No 244
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=41.36 E-value=1.6e+02 Score=27.88 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=24.7
Q ss_pred HHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++... +|++|+..---.--...++|+.+|+.|...|-
T Consensus 143 ~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANK 181 (454)
T PLN02696 143 EVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 181 (454)
T ss_pred HHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecH
Confidence 44443 47887765442223345999999999888885
No 245
>PLN02534 UDP-glycosyltransferase
Probab=41.27 E-value=30 Score=33.05 Aligned_cols=76 Identities=9% Similarity=-0.052 Sum_probs=48.3
Q ss_pred ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----c-cccccC-CCeEe-----------
Q 023072 105 VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-DFFKQF-PNCRT----------- 167 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----~-e~i~~~-~~g~l----------- 167 (287)
.+.+.+..++.+ ++...++-.+ .+.+-..+++||+++|+|+|+-...+ + ..+.+. ..|+-
T Consensus 345 g~~v~~w~pq~~-iL~h~~v~~f--vtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~ 421 (491)
T PLN02534 345 GLLIKGWAPQVL-ILSHPAIGGF--LTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGD 421 (491)
T ss_pred CeeccCCCCHHH-HhcCCccceE--EecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccc
Confidence 334457777755 7777776332 23444578999999999999987744 1 112111 11211
Q ss_pred ------ecCHHHHHHHHHHHHh
Q 023072 168 ------YDDRNGFVEATLKALA 183 (287)
Q Consensus 168 ------~~d~~~l~~~i~~ll~ 183 (287)
.-+.+++++++++++.
T Consensus 422 ~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 422 EERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccCccCHHHHHHHHHHHhc
Confidence 1267899999999986
No 246
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=40.69 E-value=1.3e+02 Score=23.66 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHhc-CCeEEEEEeCCcC-HHHHHHHHHhcCCceEE-e--cCCC--CHH-------HHhhh--CCEEE
Q 023072 63 GYKELLELLDDHQKEL-AGLEVDLYGNGED-FNQIQEAAEKLKIVVRV-Y--PGRD--HAD-------LIFHD--YKVFL 126 (287)
Q Consensus 63 g~~~ll~a~~~l~~~~-~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v-~--g~~~--~~~-------~~~~~--adv~v 126 (287)
--.+++.+..++.+.. ..+..+++|+.++ .+.+++....+|..-.+ . .... ..+ ++++. .|+++
T Consensus 16 ~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl 95 (164)
T PF01012_consen 16 VSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVL 95 (164)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 3457777777887643 2577778895344 45677777767764333 2 2222 122 45555 69999
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+++...+-.+.-.=|..+|.|+++--
T Consensus 96 ~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 96 FGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp EESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred EcCcCCCCcHHHHHHHHhCCCccceE
Confidence 99888776666666777788877643
No 247
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=40.61 E-value=2.7e+02 Score=25.10 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=21.0
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
|++|..... .-..++.||.-+|+|||+--.
T Consensus 154 d~viv~d~~-~e~~AI~EA~kl~IPvIaivD 183 (326)
T PRK12311 154 DLLFVIDTN-KEDIAIQEAQRLGIPVAAIVD 183 (326)
T ss_pred CEEEEeCCc-cchHHHHHHHHcCCCEEEEee
Confidence 554443322 236899999999999998644
No 248
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=40.31 E-value=64 Score=21.29 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=42.6
Q ss_pred CCeEEEEEeCC-cCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNG-EDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g-~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.++.+.|.|.. .+.+.+++++..+|..+ ... +-...+.+|.... .........|.+.|+|+|..+
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v--~~~------~~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~~ 72 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTV--SNS------FSKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSPD 72 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEE--ESS------SSTTSSEEEESSS-HCCCHHHHHHHHTTSEEEETH
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEE--Eee------cccCcEEEEeCCC-CCccHHHHHHHHCCCeEecHH
Confidence 46788883332 23778899999888543 222 2345566665443 334567899999999999764
No 249
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=40.23 E-value=1.6e+02 Score=27.13 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=56.9
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecC----------CCCHHHHhhhCCEEE--cCCCCC----c---chHHHH
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFL--NPSTTD----V---VCTTTA 139 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~----------~~~~~~~~~~adv~v--~ps~~E----~---~~~~~~ 139 (287)
.+-++-|+|-|.--..+.+.++.+|.++..+.. ....++++..||+++ .|...+ + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l 194 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLI 194 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHH
Confidence 456899999998777888888889987766521 112238899999988 565543 3 556788
Q ss_pred HHHhcCCeEEeecCCC
Q 023072 140 EALAMGKIVVCANHPS 155 (287)
Q Consensus 140 EAma~G~PVV~s~~~~ 155 (287)
..|--|.-+|-+..|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (378)
T PRK15438 195 RSLKPGAILINACRGA 210 (378)
T ss_pred hcCCCCcEEEECCCch
Confidence 8888888888887766
No 250
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.06 E-value=91 Score=23.10 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=41.0
Q ss_pred EEEEEeCCcCHH---HHHHHHHhcCCceEEecCCCCH--H-HHhhhCCEEEcCCCC-Cc--chHHHHHHHhcCCeEEeec
Q 023072 82 EVDLYGNGEDFN---QIQEAAEKLKIVVRVYPGRDHA--D-LIFHDYKVFLNPSTT-DV--VCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~~~---~l~~~~~~~~l~~~v~g~~~~~--~-~~~~~adv~v~ps~~-E~--~~~~~~EAma~G~PVV~s~ 152 (287)
++.++|.|.... .+.......+.+..+....... . ..+..-|++|..|.. +. .--.+-.|-..|+|||+--
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT 81 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAIT 81 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEe
Confidence 467888886532 3333334445555444221111 1 334566899888876 22 3334455667799998865
Q ss_pred CC
Q 023072 153 HP 154 (287)
Q Consensus 153 ~~ 154 (287)
..
T Consensus 82 ~~ 83 (128)
T cd05014 82 GN 83 (128)
T ss_pred CC
Confidence 53
No 251
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=39.76 E-value=41 Score=23.20 Aligned_cols=55 Identities=9% Similarity=0.075 Sum_probs=34.2
Q ss_pred CCeeeeCchhhhh----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEeccc
Q 023072 2 GFQVIRLSAATQE----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVW 60 (287)
Q Consensus 2 ~~~Vi~lS~~~~~----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~ 60 (287)
||.|++.-....+ ...+++.-+ -++|+..+.+...... ........|.|||++-+
T Consensus 19 ~~~iFt~D~~~~~~~~~~G~~~V~yLPLAa~~~~~~p~~~~~~----~~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 19 YDYIFTFDRSFVEEYRNLGAENVFYLPLAANPERFRPIPVDPE----ERKKYECDISFVGSLYP 78 (79)
T ss_pred CCEEEEECHHHHHHHHHcCCCCEEEccccCCHHHhCcccCCcc----cccccCCCEEEeCcCcc
Confidence 5666666555433 334667777 9999999988765411 11122336999998643
No 252
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=39.57 E-value=5.7 Score=34.15 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=22.5
Q ss_pred hhhhccCCCC-CCCCCHHHHHHhCCCCCCC
Q 023072 256 SRRAFGAIPG-SLHPDEELCKELGLVTPMS 284 (287)
Q Consensus 256 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 284 (287)
.+..|+..|| ++....++++++++|.||+
T Consensus 34 ~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~ 63 (247)
T PF05116_consen 34 PEILFVYVTGRSLESVLRLLREYNLPQPDY 63 (247)
T ss_dssp CGEEEEEE-SS-HHHHHHHHHHCT-EE-SE
T ss_pred CCceEEEECCCCHHHHHHHHHhCCCCCCCE
Confidence 4678999999 9999999999999999985
No 253
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=39.18 E-value=1.3e+02 Score=26.75 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=48.0
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCC----------CHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhc
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD----------HADLIFHDYKVFLN--PSTTDV---VCTTTAEALAM 144 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~----------~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~ 144 (287)
+-++-|+|-|.=-..+.++++.+|.++..+.... ..+++++.||++++ |...|+ ++-..++.|--
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~ 224 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKD 224 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCC
Confidence 4578899988766777888888888876653211 12388999999764 555565 56667777755
Q ss_pred CCeEEee
Q 023072 145 GKIVVCA 151 (287)
Q Consensus 145 G~PVV~s 151 (287)
|.-+|-+
T Consensus 225 ~a~lIN~ 231 (311)
T PRK08410 225 GAILINV 231 (311)
T ss_pred CeEEEEC
Confidence 5444443
No 254
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=38.84 E-value=3.3e+02 Score=25.36 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=69.6
Q ss_pred cEEEEEe--cc--cccCHHHHHHHHHH-HHHhc---CCeEEEEEeCCc----CHHHHHHHHHhcCCceEEec--------
Q 023072 51 GAYYIGK--MV--WSKGYKELLELLDD-HQKEL---AGLEVDLYGNGE----DFNQIQEAAEKLKIVVRVYP-------- 110 (287)
Q Consensus 51 ~i~~vG~--~~--~~Kg~~~ll~a~~~-l~~~~---~~~~l~i~G~g~----~~~~l~~~~~~~~l~~~v~g-------- 110 (287)
.++++.. +. ...|++..++++-+ +.... .+-.+.|+|... +..+++++.+++|+.+....
T Consensus 118 ~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~ 197 (428)
T cd01965 118 PVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDG 197 (428)
T ss_pred eEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCC
Confidence 4666643 22 34688888877654 32211 233466665432 57899999999999877742
Q ss_pred ------------CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHH
Q 023072 111 ------------GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFV 175 (287)
Q Consensus 111 ------------~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~ 175 (287)
+..-.+ .-+..|.+-|..+. .++..+.++|. +|+|-+....+- | ....+++.
T Consensus 198 ~~~~~~~~~~~gg~~~e~i~~~~~A~lniv~~~--~~~~~~a~~L~e~~GiP~~~~~~p~---------G--~~~t~~~l 264 (428)
T cd01965 198 HLTDGYSPLTKGGTTLEEIRDAGNAKATIALGE--YSGRKAAKALEEKFGVPYILFPTPI---------G--LKATDEFL 264 (428)
T ss_pred CCCCCccccCCCCCcHHHHHHhccCcEEEEECh--hhhHHHHHHHHHHHCCCeeecCCCc---------C--hHHHHHHH
Confidence 222233 34445555444322 35567777775 899998775321 1 02345566
Q ss_pred HHHHHHHhC
Q 023072 176 EATLKALAE 184 (287)
Q Consensus 176 ~~i~~ll~~ 184 (287)
++|.+++..
T Consensus 265 ~~l~~~~g~ 273 (428)
T cd01965 265 RALSKLSGK 273 (428)
T ss_pred HHHHHHHCC
Confidence 666665543
No 255
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.79 E-value=2.3e+02 Score=23.80 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHhcC
Q 023072 67 LLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 67 ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma~G 145 (287)
-+++++.+++.+|++ ++-.|.--+.++.+ .+.+.|.+..+.+..+..- +.-...++.+.|--.- +.-+.+|+.+|
T Consensus 53 ~~~~I~~l~~~~p~~-~IGAGTVl~~~~a~-~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~T--ptEi~~a~~~G 128 (212)
T PRK05718 53 ALEAIRLIAKEVPEA-LIGAGTVLNPEQLA-QAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVST--PSELMLGMELG 128 (212)
T ss_pred HHHHHHHHHHHCCCC-EEEEeeccCHHHHH-HHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCC--HHHHHHHHHCC
Confidence 445555666667762 23335544544444 3555676655556666533 5555667776664433 23478899999
Q ss_pred CeEEee
Q 023072 146 KIVVCA 151 (287)
Q Consensus 146 ~PVV~s 151 (287)
..+|.-
T Consensus 129 a~~vKl 134 (212)
T PRK05718 129 LRTFKF 134 (212)
T ss_pred CCEEEE
Confidence 888765
No 256
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=37.40 E-value=3.5e+02 Score=25.24 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=56.0
Q ss_pred cccCHHHHHHHHHH-HHHh---cCCeEEEEEeCC--------cCHHHHHHHHHhcCCceEEe-cCCCCHH--HHhhhCCE
Q 023072 60 WSKGYKELLELLDD-HQKE---LAGLEVDLYGNG--------EDFNQIQEAAEKLKIVVRVY-PGRDHAD--LIFHDYKV 124 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~-l~~~---~~~~~l~i~G~g--------~~~~~l~~~~~~~~l~~~v~-g~~~~~~--~~~~~adv 124 (287)
...|++..++++-+ +... .++-.+-|+|.- .|.++++++.+++|+.+..+ +.-...+ .-+..|.+
T Consensus 131 ~~~G~~~a~~al~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~~~~A~~ 210 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRSIPKAQF 210 (427)
T ss_pred cccHHHHHHHHHHHHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcE
Confidence 44788888877654 3221 123346677741 34688999999999987664 4333344 44445655
Q ss_pred EEcCCCCCcchHHHHHHH--hcCCeEEeec
Q 023072 125 FLNPSTTDVVCTTTAEAL--AMGKIVVCAN 152 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAm--a~G~PVV~s~ 152 (287)
-|..+.. .+..+.+.| -.|+|.+..+
T Consensus 211 niv~~~~--~g~~~a~~L~~~~giP~i~~~ 238 (427)
T cd01971 211 NLVLSPW--VGLEFAQHLEEKYGQPYIHSP 238 (427)
T ss_pred EEEEcHh--hHHHHHHHHHHHhCCceEecC
Confidence 4444332 356667777 4799988864
No 257
>PRK08374 homoserine dehydrogenase; Provisional
Probab=37.36 E-value=1.2e+02 Score=27.29 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHh--hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 115 ADLIF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 115 ~~~~~--~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
.++++ ..+|++|-.+..+...-....++..|++||+++.+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~ 124 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKP 124 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHH
Confidence 33566 46899998887777777788999999999988875
No 258
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.15 E-value=1.7e+02 Score=26.55 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhC--CEEEcCCCCCcchHHHHHH
Q 023072 65 KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDY--KVFLNPSTTDVVCTTTAEA 141 (287)
Q Consensus 65 ~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~a--dv~v~ps~~E~~~~~~~EA 141 (287)
..++.++..+.+ .+.+++-+-+. ..+.-+++++++++ +.+++|.+ |++.+.. |+...++..-.---.++-+
T Consensus 19 ~~f~~al~~~p~--s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~sy---EeLakd~~vDvVyi~~~~~qH~evv~l~ 92 (351)
T KOG2741|consen 19 RDFVRALHTLPE--SNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSY---EELAKDPEVDVVYISTPNPQHYEVVMLA 92 (351)
T ss_pred HHHHHHhccCcc--cCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCH---HHHhcCCCcCEEEeCCCCccHHHHHHHH
Confidence 345556554432 14455544444 56778889999887 44555553 4566665 7877766553333456778
Q ss_pred HhcCCeEEeecCCC
Q 023072 142 LAMGKIVVCANHPS 155 (287)
Q Consensus 142 ma~G~PVV~s~~~~ 155 (287)
+..||+|+|-..-+
T Consensus 93 l~~~K~VL~EKPla 106 (351)
T KOG2741|consen 93 LNKGKHVLCEKPLA 106 (351)
T ss_pred HHcCCcEEeccccc
Confidence 89999998876533
No 259
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=37.11 E-value=1.4e+02 Score=20.61 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcC---CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcC
Q 023072 64 YKELLELLDDHQKELA---GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNP 128 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~---~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~p 128 (287)
-...+..+.++.+.++ ++.++.+....+.+..++..++++.....+....... .+.+..++--.|
T Consensus 16 c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 16 CKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp HHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 3444555555555545 8999999877777888888888855433333222222 566666554444
No 260
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=36.76 E-value=2.8e+02 Score=24.03 Aligned_cols=60 Identities=12% Similarity=0.020 Sum_probs=33.5
Q ss_pred CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhC
Q 023072 122 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 122 adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~ 184 (287)
-|+++....... ..++.||..+|.|||+--... .....+. -...+ |.-.....+.+++.+
T Consensus 158 Pd~iii~d~~~~-~~ai~Ea~kl~IPiIaivDTn~dp~~Idy--pIP~Ndds~~si~li~~~l~~ 219 (258)
T PRK05299 158 PDALFVVDPNKE-HIAVKEARKLGIPVVAIVDTNCDPDGVDY--PIPGNDDAIRSIKLYTSKIAD 219 (258)
T ss_pred CCEEEEeCCCcc-HHHHHHHHHhCCCEEEEeeCCCCCcccce--eeecCCchHHHHHHHHHHHHH
Confidence 366555443322 488999999999999875533 2111220 11122 455555556665554
No 261
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=36.59 E-value=99 Score=23.16 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 68 LELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
.+.+..+....|+..++|+|.|.. ..++.+...+.|..+.+.
T Consensus 42 ~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm 87 (114)
T cd05125 42 EESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVV 87 (114)
T ss_pred HHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEE
Confidence 455555555567788999999875 345666777788777665
No 262
>PRK06932 glycerate dehydrogenase; Provisional
Probab=36.58 E-value=1.2e+02 Score=26.97 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=49.4
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC---------CCHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhcC
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR---------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMG 145 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~---------~~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~G 145 (287)
+-++-|+|-|.=-..+.++++.+|.++..+... ...++++..||++++ |...++ ++-..++.|--|
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~g 226 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPT 226 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCC
Confidence 357889999876677778888888876655321 122389999999874 545555 566677777555
Q ss_pred CeEEeecC
Q 023072 146 KIVVCANH 153 (287)
Q Consensus 146 ~PVV~s~~ 153 (287)
.-+|-+..
T Consensus 227 a~lIN~aR 234 (314)
T PRK06932 227 AFLINTGR 234 (314)
T ss_pred eEEEECCC
Confidence 55555443
No 263
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=36.41 E-value=2.2e+02 Score=22.70 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=34.6
Q ss_pred cCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCC
Q 023072 78 LAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 78 ~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~ 130 (287)
...-+.+|+|.+.- ..-+..+..+.+..+.+. -...+.+++.+.||++|...-
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeec
Confidence 34568999998765 445666667777777664 444555689999999998543
No 264
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=36.40 E-value=3.1e+02 Score=25.20 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEe-CCcCHHHHHHHHHhcCCceEEecCCCCHH---HHhhhC--CEEEcCCCCCcchHH
Q 023072 64 YKELLELLDDHQKELAGLEVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDY--KVFLNPSTTDVVCTT 137 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~a--dv~v~ps~~E~~~~~ 137 (287)
+..+...+..+.+.+|++++.+.- +....+..++ ....+..+.+++ .+... .+++.- |+++.- ..|.++..
T Consensus 63 ~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~-~~~~~~~~~~~P-~d~~~~~~~~l~~~~Pd~v~~~-~~~~~~~~ 139 (425)
T PRK05749 63 TRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQA-LFGDDVEHRYLP-YDLPGAVRRFLRFWRPKLVIIM-ETELWPNL 139 (425)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH-hcCCCceEEEec-CCcHHHHHHHHHhhCCCEEEEE-ecchhHHH
Confidence 455556666666778888876663 3222222222 111122222233 33332 555543 777653 34778888
Q ss_pred HHHHHhcCCeEEeecC
Q 023072 138 TAEALAMGKIVVCANH 153 (287)
Q Consensus 138 ~~EAma~G~PVV~s~~ 153 (287)
+..+-..|+|+|..+.
T Consensus 140 l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 140 IAELKRRGIPLVLANA 155 (425)
T ss_pred HHHHHHCCCCEEEEec
Confidence 8888889999998754
No 265
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=36.25 E-value=2.3e+02 Score=23.49 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps 129 (287)
.++.+|.= ......+..+.+. .++++++..... +.+.+++.. + ++.+. +.+. ...+..+++++..+
T Consensus 11 ~vlVvGgG------~va~rk~~~Ll~~--ga~VtVvsp~~~-~~l~~l~~~-~-~i~~~~~~~~--~~dl~~~~lVi~at 77 (205)
T TIGR01470 11 AVLVVGGG------DVALRKARLLLKA--GAQLRVIAEELE-SELTLLAEQ-G-GITWLARCFD--ADILEGAFLVIAAT 77 (205)
T ss_pred eEEEECcC------HHHHHHHHHHHHC--CCEEEEEcCCCC-HHHHHHHHc-C-CEEEEeCCCC--HHHhCCcEEEEECC
Confidence 57777731 1223334444433 467777765433 556665543 2 45554 3333 33567788766544
Q ss_pred CC-CcchHHHHHHHhcCCeEEeecCCC
Q 023072 130 TT-DVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 130 ~~-E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
-. |..--...+|-+.|+||-+.+.+.
T Consensus 78 ~d~~ln~~i~~~a~~~~ilvn~~d~~e 104 (205)
T TIGR01470 78 DDEELNRRVAHAARARGVPVNVVDDPE 104 (205)
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCcc
Confidence 33 344455667778999998877755
No 266
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=36.11 E-value=2.6e+02 Score=25.86 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=56.1
Q ss_pred EeCCcCHHHHHHHHHhcCCceEEe--cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC--cccc
Q 023072 86 YGNGEDFNQIQEAAEKLKIVVRVY--PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS--NDFF 159 (287)
Q Consensus 86 ~G~g~~~~~l~~~~~~~~l~~~v~--g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~--~e~i 159 (287)
++.-++.......+.......+++ ......+ ..+..+|++|-.-. -+++=||+.|+|+|+-.... ..+.
T Consensus 246 ~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-----HsaI~al~~g~p~i~i~Y~~K~~~l~ 320 (385)
T COG2327 246 YGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-----HSAIMALAFGVPAIAIAYDPKVRGLM 320 (385)
T ss_pred ccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-----HHHHHHHhcCCCeEEEeecHHHHHHH
Confidence 344445555555555554333443 2212122 57888998875322 24678999999999988754 3333
Q ss_pred ccC-CCeEee---c-CHHHHHHHHHHHHhCCCC
Q 023072 160 KQF-PNCRTY---D-DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 160 ~~~-~~g~l~---~-d~~~l~~~i~~ll~~~~~ 187 (287)
.+. -.++.. + +.+.+.+...+.+.+.++
T Consensus 321 ~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~ 353 (385)
T COG2327 321 QDLGLPGFAIDIDPLDAEILSAVVLERLTKLDE 353 (385)
T ss_pred HHcCCCcccccCCCCchHHHHHHHHHHHhccHH
Confidence 332 122332 2 777888887777766443
No 267
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=36.09 E-value=3.8e+02 Score=25.37 Aligned_cols=123 Identities=16% Similarity=0.107 Sum_probs=77.5
Q ss_pred EEEEE---ecccccCHHHHHHHHHHHHHhcCCeEEEEEeCC--cCHHHHHHHHHhcCCceEEecCCCCH--------H--
Q 023072 52 AYYIG---KMVWSKGYKELLELLDDHQKELAGLEVDLYGNG--EDFNQIQEAAEKLKIVVRVYPGRDHA--------D-- 116 (287)
Q Consensus 52 i~~vG---~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~l~~~v~g~~~~~--------~-- 116 (287)
.+++| ....+.+++.++.+.... .+..+.-|.| .+.+.+.+.+.+.+ +.|.|..... .
T Consensus 48 av~i~~~~~~~syl~i~~ii~~a~~~-----gadai~pGygflsen~~fae~~~~~g--l~fiGP~~~~i~~mgdK~~ar 120 (449)
T COG0439 48 AVCIGPAPSADSYLNIDAIIAAAEET-----GADAIHPGYGFLSENAAFAEACAEAG--LTFIGPSAEAIRRMGDKITAR 120 (449)
T ss_pred EEEcCCccchhhhhhHHHHHHHHHhc-----CCceEcccchhhhCCHHHHHHHHHcC--CeeeCcCHHHHHHhhhHHHHH
Confidence 56666 334556777777666544 3445566776 55677888888887 4566543211 1
Q ss_pred HHhhhCCEEEcCCCCCcc----hHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 117 LIFHDYKVFLNPSTTDVV----CTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~----~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
.+++++.|-+.|-. ++. --..--|-.-|-|||.=...| ..+....++.|.++|.++...+.....
T Consensus 121 ~~~~~aGVP~vpgs-~~~~~~~ee~~~~a~~iGyPVivKa~~G----gGg~G~r~v~~~~el~~a~~~~~~ea~ 189 (449)
T COG0439 121 RLMAKAGVPVVPGS-DGAVADNEEALAIAEEIGYPVIVKAAAG----GGGRGMRVVRNEEELEAAFEAARGEAE 189 (449)
T ss_pred HHHHHcCCCcCCCC-CCCcCCHHHHHHHHHHcCCCEEEEECCC----CCcccEEEECCHHHHHHHHHHHHHHHH
Confidence 78888999888866 332 112223345688999876633 112234778899999999988876543
No 268
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=35.74 E-value=60 Score=23.92 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=31.5
Q ss_pred CHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 114 HADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 114 ~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+.++++. ..|++|=.+-.+...--+.+++..|+.||+.+.+.
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~a 93 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGA 93 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHH
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHH
Confidence 3346666 78999988777877777899999999999998754
No 269
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.28 E-value=2.2e+02 Score=23.25 Aligned_cols=59 Identities=10% Similarity=0.048 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCC-----------cchHHHHHHHhcCCeEEeecCCC
Q 023072 93 NQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD-----------VVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 93 ~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E-----------~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
..+.+..++++..+.+... .+ -+..+|.+|+|--.+ ++.-.+.++...|+||+..=.|.
T Consensus 13 ~~~~~~l~~~g~~v~~~~~---~~-~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~ 82 (199)
T PRK13181 13 RSVANALKRLGVEAVVSSD---PE-EIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGM 82 (199)
T ss_pred HHHHHHHHHCCCcEEEEcC---hH-HhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhH
Confidence 4455555666665555421 22 245677777765322 34456778888999999875443
No 270
>PLN02928 oxidoreductase family protein
Probab=34.76 E-value=1.5e+02 Score=26.95 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=45.1
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC--------------------------CCHHHHhhhCCEEEc--CCCC
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------------------DHADLIFHDYKVFLN--PSTT 131 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~--------------------------~~~~~~~~~adv~v~--ps~~ 131 (287)
+-++.|+|-|.--..+.+.+..+|.++.++... ...+++++.||++++ |...
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCCh
Confidence 457889999886677777788888877665321 112278888898775 4444
Q ss_pred Cc---chHHHHHHHhcCCeEEee
Q 023072 132 DV---VCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 132 E~---~~~~~~EAma~G~PVV~s 151 (287)
++ ++-..+..|--|.-+|-+
T Consensus 239 ~T~~li~~~~l~~Mk~ga~lINv 261 (347)
T PLN02928 239 ETAGIVNDEFLSSMKKGALLVNI 261 (347)
T ss_pred HhhcccCHHHHhcCCCCeEEEEC
Confidence 44 444555555545444433
No 271
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=34.63 E-value=2e+02 Score=24.20 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=23.8
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED 91 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~ 91 (287)
|+-.|++ |...+++.+-.-+..++++.+.++|+|..
T Consensus 7 ~ik~Gni----Gts~v~dlllDErAdRedi~vrVvgsgaK 42 (277)
T COG1927 7 FIKCGNI----GTSPVVDLLLDERADREDIEVRVVGSGAK 42 (277)
T ss_pred EEEeccc----chHHHHHHHHHhhcccCCceEEEeccccc
Confidence 4445555 55556666554455668999999998764
No 272
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=34.56 E-value=33 Score=27.44 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred hCCEEEcCCCC----C--cchHHHHHHHhcCCeEEeecCCC-ccccccCCCe---EeecCHHHH
Q 023072 121 DYKVFLNPSTT----D--VVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNC---RTYDDRNGF 174 (287)
Q Consensus 121 ~adv~v~ps~~----E--~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g---~l~~d~~~l 174 (287)
.+|++|+.-+- | +|.-.+.+|++.|+||+++=.+. .+-...+..| .+.+|.+.+
T Consensus 93 ~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l~~W~~Fagg~a~~L~~d~~al 156 (159)
T PF10649_consen 93 GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNLEAWRAFAGGLATELPPDREAL 156 (159)
T ss_pred CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHhcCCccccCCCCHHHH
Confidence 46988875331 3 46677899999999999987654 3333333333 334465554
No 273
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=34.29 E-value=2.6e+02 Score=24.10 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=43.7
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+++++.+-+. +.+..+++++.++. .++ .+.++++..+|+.+..+..+...-.+.+++..|+.||+...+
T Consensus 26 ~~elv~v~d~-~~~~a~~~a~~~~~--~~~---~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~g 94 (265)
T PRK13304 26 NAELYAFYDR-NLEKAENLASKTGA--KAC---LSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVG 94 (265)
T ss_pred CeEEEEEECC-CHHHHHHHHHhcCC--eeE---CCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchH
Confidence 5565544443 34555555555442 222 334456688999988776666655667788999999987653
No 274
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=34.02 E-value=1.6e+02 Score=25.47 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=57.5
Q ss_pred EEEEecccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcC-----HHHHHHHHHhcCCceEEecC--CCCHH--HHhhhC
Q 023072 53 YYIGKMVWSKGYKELLELLDDHQKELAGLEVDLY-GNGED-----FNQIQEAAEKLKIVVRVYPG--RDHAD--LIFHDY 122 (287)
Q Consensus 53 ~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~-----~~~l~~~~~~~~l~~~v~g~--~~~~~--~~~~~a 122 (287)
+|+|-+.-+-|...+.+.+++|++++ ++.|+|+ |.... .....+...++|.++...|. .++.+ +++...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~-~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDviT~GNH~wdkkei~~~i~~~ 79 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEY-GIDFVIANGENAAGGFGITPKIAEELFKAGVDVITMGNHIWDKKEIFDFIDKE 79 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEEE--TTTTSSTTHHHHHHH-
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhc-CCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEEecCcccccCcHHHHHHhcC
Confidence 68898888899999999999998875 5778888 53211 23344445567877555565 35555 889998
Q ss_pred CEEEcCCCC-C---cchHHHHHHHhcCCeEEeecCCCc
Q 023072 123 KVFLNPSTT-D---VVCTTTAEALAMGKIVVCANHPSN 156 (287)
Q Consensus 123 dv~v~ps~~-E---~~~~~~~EAma~G~PVV~s~~~~~ 156 (287)
+-+|-|.-+ + |.|..++|. -|+.+-..+.-|+
T Consensus 80 ~~ilRPaN~p~~~pG~G~~i~~~--~g~kv~ViNl~Gr 115 (253)
T PF13277_consen 80 PRILRPANYPPGTPGRGYRIFEK--NGKKVAVINLMGR 115 (253)
T ss_dssp SSEE--TTS-TT-SSBSEEEEEE--TTEEEEEEEEE--
T ss_pred CCcEECCCCCCCCCcCcEEEEEE--CCEEEEEEECccc
Confidence 888888765 3 345555554 4444444444443
No 275
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=33.74 E-value=2e+02 Score=26.57 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=54.8
Q ss_pred ccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchH
Q 023072 59 VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCT 136 (287)
Q Consensus 59 ~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~ 136 (287)
.-.+|++.|.+...+++ | +.+.+++......++......+.+.+++.+.+...++.. .+|+.|+...--.-=.
T Consensus 34 aa~~n~~~L~~q~~~f~---p--~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 108 (389)
T TIGR00243 34 SAGKNVALMVEQILEFR---P--KFVAIDDEASLKDLKTMLQQQGSRTEVLVGEEGICEMAALEDVDQVMNAIVGAAGLL 108 (389)
T ss_pred EcCCCHHHHHHHHHHcC---C--CEEEEcCHHHHHHHHHHhhcCCCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 34679999988887773 4 455666644444455433211323566644433334444 4588888654433334
Q ss_pred HHHHHHhcCCeEEeecCC
Q 023072 137 TTAEALAMGKIVVCANHP 154 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~ 154 (287)
..++|+..|+.+--.|-.
T Consensus 109 pt~~Ai~~gk~iaLANKE 126 (389)
T TIGR00243 109 PTLAAIRAGKTIALANKE 126 (389)
T ss_pred HHHHHHHCCCcEEEechh
Confidence 678999999998777753
No 276
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=33.63 E-value=2.1e+02 Score=25.30 Aligned_cols=73 Identities=10% Similarity=0.048 Sum_probs=42.9
Q ss_pred eEEEEEeCCcCHHHHHHHHHhcCCceEEecCCC------------CHHHHhhhCCEEEcCCCC-------------Ccc-
Q 023072 81 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD------------HADLIFHDYKVFLNPSTT-------------DVV- 134 (287)
Q Consensus 81 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~------------~~~~~~~~adv~v~ps~~-------------E~~- 134 (287)
.++.++|.....-.+-+...+.|..+.+.|..+ ..++.+..+|+++.|... +.+
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~ 82 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLV 82 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCc
Confidence 456666552222333344455676666644321 223678999999988322 112
Q ss_pred -hHHHHHHHhcCCeEEeecC
Q 023072 135 -CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 135 -~~~~~EAma~G~PVV~s~~ 153 (287)
.-..++.|--|..+++.-.
T Consensus 83 ~~~~~l~~l~~~~~v~~G~~ 102 (296)
T PRK08306 83 LTEELLELTPEHCTIFSGIA 102 (296)
T ss_pred chHHHHHhcCCCCEEEEecC
Confidence 3468999999987776554
No 277
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=33.48 E-value=1.3e+02 Score=26.56 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=41.5
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCC-----------------HHHHhhhCCEEEcCCCCCcchHHHHHH
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH-----------------ADLIFHDYKVFLNPSTTDVVCTTTAEA 141 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~-----------------~~~~~~~adv~v~ps~~E~~~~~~~EA 141 (287)
.+-++.|+|.|.--..+-..+..+|..+.++...+. ..+++..+|++++.+-.....-..++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~ 230 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSK 230 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHc
Confidence 367899999987655566666777876666533221 115667889998865322222223344
Q ss_pred HhcCCeEE
Q 023072 142 LAMGKIVV 149 (287)
Q Consensus 142 ma~G~PVV 149 (287)
|.-|.-+|
T Consensus 231 ~~~g~vII 238 (296)
T PRK08306 231 MPPEALII 238 (296)
T ss_pred CCCCcEEE
Confidence 55555444
No 278
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=33.26 E-value=3e+02 Score=23.34 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=52.1
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
.++.+|. -....+-+..+.+. .++++++..... +++.++++. + .+++... +.....+..+++.+..+-
T Consensus 27 ~VLVVGG------G~VA~RK~~~Ll~~--gA~VtVVap~i~-~el~~l~~~-~-~i~~~~r-~~~~~dl~g~~LViaATd 94 (223)
T PRK05562 27 KVLIIGG------GKAAFIKGKTFLKK--GCYVYILSKKFS-KEFLDLKKY-G-NLKLIKG-NYDKEFIKDKHLIVIATD 94 (223)
T ss_pred EEEEECC------CHHHHHHHHHHHhC--CCEEEEEcCCCC-HHHHHHHhC-C-CEEEEeC-CCChHHhCCCcEEEECCC
Confidence 5777773 22333333333332 577788876443 445555442 2 3445422 222334677777666655
Q ss_pred CCcchHH-HHHHHhcCCeEEeecCCC-ccc
Q 023072 131 TDVVCTT-TAEALAMGKIVVCANHPS-NDF 158 (287)
Q Consensus 131 ~E~~~~~-~~EAma~G~PVV~s~~~~-~e~ 158 (287)
.+...-. .-+|-+.|.+|.+.+.+. .++
T Consensus 95 D~~vN~~I~~~a~~~~~lvn~vd~p~~~dF 124 (223)
T PRK05562 95 DEKLNNKIRKHCDRLYKLYIDCSDYKKGLC 124 (223)
T ss_pred CHHHHHHHHHHHHHcCCeEEEcCCcccCeE
Confidence 4444444 445667799999888765 443
No 279
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=33.21 E-value=2.5e+02 Score=25.95 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=53.8
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC----------CCHHHHhhhCCEEEc--CCCCC----c---chHHHH
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR----------DHADLIFHDYKVFLN--PSTTD----V---VCTTTA 139 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~----------~~~~~~~~~adv~v~--ps~~E----~---~~~~~~ 139 (287)
.+-++-|+|-|.--..+.+.+..+|.++.++... ...++++..||++++ |...+ + ++-..+
T Consensus 115 ~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l 194 (381)
T PRK00257 115 AERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFL 194 (381)
T ss_pred CcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHH
Confidence 3568999999887677778888888877665211 122378899999764 54332 3 555688
Q ss_pred HHHhcCCeEEeecCCC
Q 023072 140 EALAMGKIVVCANHPS 155 (287)
Q Consensus 140 EAma~G~PVV~s~~~~ 155 (287)
..|--|.-+|-+..|+
T Consensus 195 ~~mk~gailIN~aRG~ 210 (381)
T PRK00257 195 ASLRPGAWLINASRGA 210 (381)
T ss_pred hcCCCCeEEEECCCCc
Confidence 8888888888777665
No 280
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=32.92 E-value=2.7e+02 Score=22.64 Aligned_cols=103 Identities=9% Similarity=0.012 Sum_probs=58.8
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhh--hCCEEEcCCCC-C---cchHHHHHHHh---cCCe
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPSTT-D---VVCTTTAEALA---MGKI 147 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~--~adv~v~ps~~-E---~~~~~~~EAma---~G~P 147 (287)
.++.|+.+.+. ...++......+ ...+.+.....+ ..+. ..|++++-... + .-|..+++.+. -++|
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~~-~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 4 MNVIIADDHPIVLFGIRKSLEQIE-WVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 56677766443 344555555443 222332223322 3333 35887764333 2 25677777664 3456
Q ss_pred EEeec-CCC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 148 VVCAN-HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 148 VV~s~-~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
||.-. ... ...+..|..|++.. ++++|.+++..++..
T Consensus 83 iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 83 IIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 65543 333 34566677888876 899999999998765
No 281
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=32.84 E-value=4.3e+02 Score=25.48 Aligned_cols=68 Identities=22% Similarity=0.222 Sum_probs=44.9
Q ss_pred EEEEEeCC-------cCHHHHHHHHHhcCCceEEe-cC-CCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEE
Q 023072 82 EVDLYGNG-------EDFNQIQEAAEKLKIVVRVY-PG-RDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVV 149 (287)
Q Consensus 82 ~l~i~G~g-------~~~~~l~~~~~~~~l~~~v~-g~-~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV 149 (287)
.+-|+|.- .|..+++++.+++|+.+... +. ..-.+ .-+..|++-|..+.. ++..+.++|- +|+|.+
T Consensus 160 ~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~--~g~~~A~~Lee~fGiP~i 237 (519)
T PRK02910 160 SVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYRE--IGESAARYLEREFGQPYV 237 (519)
T ss_pred eEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHH--HHHHHHHHHHHHhCCccc
Confidence 57777752 35678999999999988774 33 33333 455566665554332 5677777764 789987
Q ss_pred ee
Q 023072 150 CA 151 (287)
Q Consensus 150 ~s 151 (287)
..
T Consensus 238 ~~ 239 (519)
T PRK02910 238 KT 239 (519)
T ss_pred cc
Confidence 63
No 282
>PF14918 MTBP_N: MDM2-binding
Probab=32.83 E-value=98 Score=26.57 Aligned_cols=72 Identities=22% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCC-----eEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHH
Q 023072 66 ELLELLDDHQKELAG-----LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAE 140 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~-----~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~E 140 (287)
+..+.+.+|.++.|. +.+++.+...+...+++... ++|.+.|.. .++.|++-|.++..+...-++.|
T Consensus 141 e~Ae~LHqLsDkLP~pgramldVil~~s~~d~pklkDcLp-------~iGALKhl~-eWhsAkiti~t~~~~~~~qKia~ 212 (271)
T PF14918_consen 141 EAAENLHQLSDKLPAPGRAMLDVILLPSEEDSPKLKDCLP-------LIGALKHLR-EWHSAKITIATSHCEISWQKIAE 212 (271)
T ss_pred HHHHHHHHHhhcCCCCCceeEEEEEecCCCCCccHHHHHH-------HHHHHHHHH-HhhhceEEEecccccccHHHHHH
Confidence 334444445444441 34445565555455555433 234444443 68889999999999988899999
Q ss_pred HHhcC
Q 023072 141 ALAMG 145 (287)
Q Consensus 141 Ama~G 145 (287)
+++..
T Consensus 213 yLSA~ 217 (271)
T PF14918_consen 213 YLSAN 217 (271)
T ss_pred hcCCC
Confidence 99876
No 283
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=32.78 E-value=2.9e+02 Score=22.90 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHH--HhcCCceEE-ec-----------C--C-CCHH--HHhh
Q 023072 60 WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAA--EKLKIVVRV-YP-----------G--R-DHAD--LIFH 120 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~l~~~v-~g-----------~--~-~~~~--~~~~ 120 (287)
..-.+..|++-+..+.......++.|+|.|..-..+.... ...+..+.- +. + + ...+ ++++
T Consensus 64 ~gy~v~~l~~~~~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~ 143 (213)
T PRK05472 64 VGYNVEELLEFIEKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVK 143 (213)
T ss_pred CCeeHHHHHHHHHHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHH
Confidence 3457888888888887666678999999987644443321 122322211 10 0 0 1111 5554
Q ss_pred h--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 121 D--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
. .|+++.......-.-..-.++..|+..|.+-.|-
T Consensus 144 ~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 144 ENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 4 6777765544443344555677997666665554
No 284
>PRK15482 transcriptional regulator MurR; Provisional
Probab=31.84 E-value=2.9e+02 Score=23.91 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=41.0
Q ss_pred EEEEEeCCcCHH---HHHHHHHhcCCceEEecCCCCHH---HHhhhCCEEEcCCCC-Cc--chHHHHHHHhcCCeEEeec
Q 023072 82 EVDLYGNGEDFN---QIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTT-DV--VCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~~~---~l~~~~~~~~l~~~v~g~~~~~~---~~~~~adv~v~ps~~-E~--~~~~~~EAma~G~PVV~s~ 152 (287)
++.|+|.|.... .+.....+.|.++.+........ ..+..-|++|.-|.. +. .--.+-.|-..|.+||+--
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT 216 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAIT 216 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 578889887632 23334445565555543221111 334556998887775 22 2233445557899988865
Q ss_pred CC
Q 023072 153 HP 154 (287)
Q Consensus 153 ~~ 154 (287)
..
T Consensus 217 ~~ 218 (285)
T PRK15482 217 SL 218 (285)
T ss_pred CC
Confidence 53
No 285
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=31.68 E-value=3.2e+02 Score=23.12 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=22.6
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
|++|..... .-..++.||.-+|.|+|+--...
T Consensus 157 d~vii~d~~-~~~~ai~Ea~~l~IP~I~ivDTn 188 (225)
T TIGR01011 157 DLLFVIDPV-KEKIAVAEARKLGIPVVAIVDTN 188 (225)
T ss_pred CEEEEeCCC-ccHHHHHHHHHcCCCEEEEeeCC
Confidence 665554333 23578999999999999975533
No 286
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=31.41 E-value=2.5e+02 Score=21.80 Aligned_cols=69 Identities=17% Similarity=0.057 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
..-+++|+|.+.. .+.+..+..+.+..+..... ..+.++..+.||+++...-.- ++.--|-+--|.-||
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~--~~i~~~~ikpGa~Vi 97 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP--EKVPTEWIKPGATVI 97 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC--CccCHHHcCCCCEEE
Confidence 4678999998776 45566666666777666543 334557899999999865544 334456677777776
No 287
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=31.32 E-value=1e+02 Score=23.34 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEE
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRV 108 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v 108 (287)
.+.-+.-.+-|..+.+.-++++++|+|.|.+ ...+....+..++.+..
T Consensus 50 ~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~ 101 (127)
T COG3737 50 ATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEP 101 (127)
T ss_pred cChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCcccc
Confidence 3444444677777777788999999999976 34566666666665544
No 288
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=31.07 E-value=3.6e+02 Score=23.55 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.5
Q ss_pred hhCCE-EEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 120 HDYKV-FLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 120 ~~adv-~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+..|. .|.|.-...+.-.+-+|...|+|||+-+...
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~ 126 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDI 126 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCC
Confidence 44555 4567677889999999999999999999865
No 289
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=30.56 E-value=2.7e+02 Score=25.98 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=58.0
Q ss_pred cccCHHHHHHHHHHHHHh-----cCCeEEEEEeCC--------cCHHHHHHHHHhcCCceEEe-cC-CCCHH-HHhhhCC
Q 023072 60 WSKGYKELLELLDDHQKE-----LAGLEVDLYGNG--------EDFNQIQEAAEKLKIVVRVY-PG-RDHAD-LIFHDYK 123 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~-----~~~~~l~i~G~g--------~~~~~l~~~~~~~~l~~~v~-g~-~~~~~-~~~~~ad 123 (287)
...|++..++++-+.... ...-.+-|+|.. .|..+++++.+++|+.+..+ ++ ....+ .-+..|.
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~ 215 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELERASEAA 215 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCC
Confidence 347888888877654321 112246667743 23578999999999987664 33 44444 4455555
Q ss_pred EEEcCCCCCcchHHHHHHH--hcCCeEEeecC
Q 023072 124 VFLNPSTTDVVCTTTAEAL--AMGKIVVCANH 153 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAm--a~G~PVV~s~~ 153 (287)
+-|..+. .++..+.+.| -.|+|.+....
T Consensus 216 lniv~~~--~~g~~~a~~Lee~~GiP~~~~~~ 245 (426)
T cd01972 216 ANVTLCL--DLGYYLGAALEQRFGVPEIKAPQ 245 (426)
T ss_pred EEEEECh--hHHHHHHHHHHHHhCCCeEecCC
Confidence 5554333 3567788888 48999997654
No 290
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=30.18 E-value=1.4e+02 Score=28.32 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=60.3
Q ss_pred cccccCHHHHHHHHHHHHHhcCCeEEEEE---eCCcCHHHHHHHHHhcCCc-eEEecCCCCHHHHhhhCCEEE-------
Q 023072 58 MVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKIV-VRVYPGRDHADLIFHDYKVFL------- 126 (287)
Q Consensus 58 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l~-~~v~g~~~~~~~~~~~adv~v------- 126 (287)
+.-.|-.+.+-+..+.|.++..+++|-|- |.-| -.+.-+..+.+.. ..++ ..++..+-+.++|+.+
T Consensus 318 mAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP--GHMNVLLAEa~VpYd~~~-emdeiN~~f~~~Dv~lViGANDv 394 (463)
T PF02233_consen 318 MAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMP--GHMNVLLAEANVPYDIVK-EMDEINPDFPDTDVVLVIGANDV 394 (463)
T ss_dssp HHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSST--THHHHHHHHCT--GGGEE-EHHHHGGGGGG-SEEEEES-SGG
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC--CcceEEEEecCCCHHHHh-hhhhcccchhcCCEEEEeccccc
Confidence 44445555555555555555445555543 3322 2233333333321 1111 1111115577888865
Q ss_pred -cCCCCC-c----chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHHHHHH
Q 023072 127 -NPSTTD-V----VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVEATLK 180 (287)
Q Consensus 127 -~ps~~E-~----~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~~i~~ 180 (287)
||.-.| + +|++++|..-+..-||+-.. +| ++.+-...+-.++.|.++-.+.+..
T Consensus 395 VNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~~~~l~~ 461 (463)
T PF02233_consen 395 VNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKTLEELVA 461 (463)
T ss_dssp G-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHHHHHHHH
T ss_pred cCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHHHHHHHH
Confidence 565443 2 89999999999988887665 32 5666665555778788877766654
No 291
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=30.07 E-value=3.7e+02 Score=23.35 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHhcCCeE-E-EEEeCCcC-----HHHHHHHHHhcCCceEEe--cCCCCHH----HHhhhCCEEEcCC
Q 023072 63 GYKELLELLDDHQKELAGLE-V-DLYGNGED-----FNQIQEAAEKLKIVVRVY--PGRDHAD----LIFHDYKVFLNPS 129 (287)
Q Consensus 63 g~~~ll~a~~~l~~~~~~~~-l-~i~G~g~~-----~~~l~~~~~~~~l~~~v~--g~~~~~~----~~~~~adv~v~ps 129 (287)
-+..-++.+.++ .|+++ + +++.+... .+.+++.++++++.+..+ ....+.. .+-...|+++.+.
T Consensus 116 ~~~~~l~l~~~l---~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~ 192 (294)
T PF04392_consen 116 PIEKQLELIKKL---FPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLP 192 (294)
T ss_dssp -HHHHHHHHHHH---STT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S
T ss_pred CHHHHHHHHHHh---CCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEEC
Confidence 444555555554 46543 4 34443321 345777788888765543 3333222 3445568877764
Q ss_pred CC---CcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHH----HHHHHHHHHhC
Q 023072 130 TT---DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNG----FVEATLKALAE 184 (287)
Q Consensus 130 ~~---E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~----l~~~i~~ll~~ 184 (287)
.. ..+...+..+...++||+++.. ..+.+|.-+-+..|..+ .++...++|+.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~iPv~~~~~---~~v~~Gal~~~~~~~~~~G~~Aa~~a~~IL~G 251 (294)
T PF04392_consen 193 DNLVDSNFEAILQLANEAKIPVFGSSD---FYVKAGALGGYSVDYYEQGRQAAEMAVRILKG 251 (294)
T ss_dssp -HHHHHTHHHHHHHCCCTT--EEESSH---HHHCTT-SEEEE--HHHHHHHHHHHHHHHCTT
T ss_pred CcchHhHHHHHHHHHHhcCCCEEECCH---HHhcCCcEEEEccCHHHHHHHHHHHHHHHHCC
Confidence 32 2334445566779999999762 34445433323333333 33344445543
No 292
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=29.92 E-value=2.4e+02 Score=23.69 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=58.4
Q ss_pred EEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh-c-CCeEEeecCCCcccccc
Q 023072 84 DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA-M-GKIVVCANHPSNDFFKQ 161 (287)
Q Consensus 84 ~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma-~-G~PVV~s~~~~~e~i~~ 161 (287)
+++|+....+.++..++.++.. +.+... ++-...+|+.++.-.++..+-++-|--. . |+-||-+..|-......
T Consensus 27 V~igs~r~~~~~~a~a~~l~~~--i~~~~~--~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~ 102 (211)
T COG2085 27 VIIGSSRGPKALAAAAAALGPL--ITGGSN--EDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNPIEVNGEP 102 (211)
T ss_pred EEEecCCChhHHHHHHHhhccc--cccCCh--HHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCCccccCCc
Confidence 4455544456666666665533 333322 2457789999998888887777665552 3 79999887774222222
Q ss_pred CCCeEeecCHHHHHHHHHHHHhCC
Q 023072 162 FPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 162 ~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
+ .-+.+++..+-++.+.+++.+.
T Consensus 103 ~-~~~~~~~~~saae~va~~lp~a 125 (211)
T COG2085 103 G-DLYLVPSEGSAAEIVAKLLPGA 125 (211)
T ss_pred c-ccccCCCCCcHHHHHHHHCCCc
Confidence 1 1233346666677777777653
No 293
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=29.56 E-value=4.3e+02 Score=23.96 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=54.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcC-CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCE--EEc
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELA-GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKV--FLN 127 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~-~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv--~v~ 127 (287)
++..+|. .. | ...++++..+ + +++++-+-+. +.++.++.+++++.. .+.+.++++..-|+ +..
T Consensus 5 rVgViG~-~~--G-~~h~~al~~~----~~~~eLvaV~d~-~~erA~~~A~~~gi~-----~y~~~eell~d~Di~~V~i 70 (343)
T TIGR01761 5 SVVVCGT-RF--G-QFYLAAFAAA----PERFELAGILAQ-GSERSRALAHRLGVP-----LYCEVEELPDDIDIACVVV 70 (343)
T ss_pred EEEEEeH-HH--H-HHHHHHHHhC----CCCcEEEEEEcC-CHHHHHHHHHHhCCC-----ccCCHHHHhcCCCEEEEEe
Confidence 6888886 32 3 2455666543 4 6777655543 357778888888743 23445567765555 444
Q ss_pred CCC-CCcc-hHHHHHHHhcCCeEEeecC
Q 023072 128 PST-TDVV-CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 128 ps~-~E~~-~~~~~EAma~G~PVV~s~~ 153 (287)
|+. .-+. .-...+||..|+.|+|-+.
T Consensus 71 pt~~P~~~H~e~a~~aL~aGkHVL~EKP 98 (343)
T TIGR01761 71 RSAIVGGQGSALARALLARGIHVLQEHP 98 (343)
T ss_pred CCCCCCccHHHHHHHHHhCCCeEEEcCC
Confidence 442 1122 3345679999999999876
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.29 E-value=4.6e+02 Score=24.20 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=52.7
Q ss_pred ccCHHHHHHHHHHHHHh--cC----CeEEEEEeCC---cCHHHHHHHHHhcCCceEE-ecCC-CCHH-HHhhhCCEEEcC
Q 023072 61 SKGYKELLELLDDHQKE--LA----GLEVDLYGNG---EDFNQIQEAAEKLKIVVRV-YPGR-DHAD-LIFHDYKVFLNP 128 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~--~~----~~~l~i~G~g---~~~~~l~~~~~~~~l~~~v-~g~~-~~~~-~~~~~adv~v~p 128 (287)
..|++..++++-+.... .+ +-.+-|+|+- .+..+++++.+++|+.+.. +..- .-++ .-+..|.+-|..
T Consensus 133 ~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~~A~lniv~ 212 (410)
T cd01968 133 NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAGELWGVKPLLEKLGIRVLASITGDSRVDEIRRAHRAKLNVVQ 212 (410)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhhhhCcEEEEE
Confidence 46777777665544311 11 3457777743 2467899999999998764 4433 3333 445555555543
Q ss_pred CCCCcchHHHHHHH--hcCCeEEe
Q 023072 129 STTDVVCTTTAEAL--AMGKIVVC 150 (287)
Q Consensus 129 s~~E~~~~~~~EAm--a~G~PVV~ 150 (287)
+ ...+..+.+.| -.|+|.+.
T Consensus 213 ~--~~~~~~~a~~L~~~fGip~~~ 234 (410)
T cd01968 213 C--SKSMIYLARKMEEKYGIPYIE 234 (410)
T ss_pred c--hhHHHHHHHHHHHHhCCCeEe
Confidence 2 22445567777 47999885
No 295
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=29.20 E-value=1.7e+02 Score=26.16 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=25.5
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
..|.+++ |...+.+.-.+-+|...|+|||+.+...
T Consensus 80 ~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~ 115 (336)
T PRK15408 80 GYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDT 115 (336)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 3566555 4444556677888999999999998754
No 296
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=29.15 E-value=3.4e+02 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=18.9
Q ss_pred HHhh--hCCEEEcCCC-CCcchHHHHHHHh--cCCeEE
Q 023072 117 LIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVV 149 (287)
Q Consensus 117 ~~~~--~adv~v~ps~-~E~~~~~~~EAma--~G~PVV 149 (287)
+.++ ++|++|=.|. .-.|.--+++.|+ |..|+|
T Consensus 99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEE
Confidence 5666 6677776664 3446666666665 344444
No 297
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=29.13 E-value=2.3e+02 Score=25.50 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=49.9
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCC-------------HHHHhhhCCEEE--cCCCCCc---chHHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH-------------ADLIFHDYKVFL--NPSTTDV---VCTTTAEA 141 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~-------------~~~~~~~adv~v--~ps~~E~---~~~~~~EA 141 (287)
.-++-|+|.|.=-..+.+.++.++.++.++...+. .++++..||+++ +|...|+ +.-..++.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~ 225 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAK 225 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHh
Confidence 34677778776556677777777777766643321 227899999976 4767676 45556777
Q ss_pred HhcCCeEEeecCCC
Q 023072 142 LAMGKIVVCANHPS 155 (287)
Q Consensus 142 ma~G~PVV~s~~~~ 155 (287)
|--|.-+|-+..|+
T Consensus 226 mk~ga~lVNtaRG~ 239 (324)
T COG1052 226 MKPGAILVNTARGG 239 (324)
T ss_pred CCCCeEEEECCCcc
Confidence 76666666555444
No 298
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=28.98 E-value=2.9e+02 Score=21.77 Aligned_cols=38 Identities=11% Similarity=0.023 Sum_probs=23.7
Q ss_pred HhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 118 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 118 ~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
-+..+|+++..+-.+..-..+.+....+.+|-..+.+.
T Consensus 67 dl~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~ 104 (157)
T PRK06719 67 DIKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGT 104 (157)
T ss_pred cCCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCC
Confidence 46778888887666555555555444455666555544
No 299
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=28.48 E-value=2.4e+02 Score=26.73 Aligned_cols=120 Identities=9% Similarity=0.021 Sum_probs=67.0
Q ss_pred cEEEEEec----ccccCHHHHHHHHHHHH-Hh--cCCeEEEEEeCC---cCHHHHHHHHHhcCCceEEec----------
Q 023072 51 GAYYIGKM----VWSKGYKELLELLDDHQ-KE--LAGLEVDLYGNG---EDFNQIQEAAEKLKIVVRVYP---------- 110 (287)
Q Consensus 51 ~i~~vG~~----~~~Kg~~~ll~a~~~l~-~~--~~~~~l~i~G~g---~~~~~l~~~~~~~~l~~~v~g---------- 110 (287)
.|+++..- ....|++..++++-+.. .. .++-.+-|+|.- .|.++++++.+.+|+++.++.
T Consensus 130 ~vv~v~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~~~gD~~eik~lL~~~Gl~vn~l~d~~~~d~~~~ 209 (457)
T TIGR02932 130 KLVPVHTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWVNPGDVVLLKHYFSEMGVDANILMDTEDFDSPML 209 (457)
T ss_pred eEEEeeCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEEeccccccCCCC
Confidence 46666532 23368888887766433 21 123346666532 256789999999999887742
Q ss_pred ---------CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHH
Q 023072 111 ---------GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEAT 178 (287)
Q Consensus 111 ---------~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i 178 (287)
+..-.+ .-+..|.+-+....+ .+..+.|+|. +|+|-+..+.+- |+ .+.++|.+.|
T Consensus 210 ~~~~~~~~g~ts~~~i~~~~~A~~nlv~~~~--~g~~~A~~Lee~fGiPy~~~~~p~---------G~--~~t~~~L~~l 276 (457)
T TIGR02932 210 PDKSIFTHGRTTVEDIADSANAIATLALAKY--EGGNTAEFLQETFDVPSILVPTPY---------GI--KNTDAMLKNI 276 (457)
T ss_pred CCccccCCCCCCHHHHHhhhhCcEEEEEccc--chHHHHHHHHHHHCCCeeccCCCc---------Ch--HHHHHHHHHH
Confidence 122222 333444444433333 3466777774 788887544321 11 2455666666
Q ss_pred HHHHh
Q 023072 179 LKALA 183 (287)
Q Consensus 179 ~~ll~ 183 (287)
.+++.
T Consensus 277 a~~~g 281 (457)
T TIGR02932 277 SELTG 281 (457)
T ss_pred HHHHC
Confidence 66554
No 300
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=28.48 E-value=4.8e+02 Score=24.12 Aligned_cols=131 Identities=10% Similarity=0.039 Sum_probs=74.2
Q ss_pred CCcEEEEEeccccc---C---HHHHHHHHHHHHHhc-CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHh
Q 023072 49 AKGAYYIGKMVWSK---G---YKELLELLDDHQKEL-AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIF 119 (287)
Q Consensus 49 ~~~i~~vG~~~~~K---g---~~~ll~a~~~l~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~ 119 (287)
.+.|+|.-.+.+.. | ....+...+...... .+..+++-=.....+.+...- +. ...+.--.+..+ ++|
T Consensus 208 k~vIlyaPTfr~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~k~Hp~is~~~~~~~-~~--~~~~~~vs~~~di~dll 284 (388)
T COG1887 208 KKVILYAPTFRDNDVLIGTQFFNLDIDIEKLKEKLGENEYVIIVKPHPLISDKIDKRY-AL--DDFVLDVSDNADINDLL 284 (388)
T ss_pred CceEEecCCccCCccccchhhhhhhhhHHHHHHhhccCCeEEEEecChhhhhhhhhhh-hc--cceeEecccchhHHHHH
Confidence 44788887776665 2 344444443333333 244444444322222222111 11 111211112233 899
Q ss_pred hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC------cccccc---CCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 120 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQ---FPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 120 ~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~------~e~i~~---~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
..+|++|- -++.+..|+|..-+|||-.-.-. +.++.+ ..-|-++.+..++.++|.....+++.
T Consensus 285 ~~sDiLIT-----DySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~~~~~~ 356 (388)
T COG1887 285 LVSDILIT-----DYSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYDEDGNY 356 (388)
T ss_pred hhhCEEEe-----echHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhhcccch
Confidence 99999975 46889999999999999875432 122222 22355666899999999998876544
No 301
>PRK06436 glycerate dehydrogenase; Provisional
Probab=28.43 E-value=2.7e+02 Score=24.74 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=45.3
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC----------CCHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhc
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR----------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAM 144 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~----------~~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~ 144 (287)
+-++-|+|-|.--..+.++++.+|.++.++... ...++++..||++++ |...++ ++-..+++|--
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ 201 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRK 201 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCC
Confidence 457889998876566667777788776665321 122378899998765 444444 45566777755
Q ss_pred CCeEEe
Q 023072 145 GKIVVC 150 (287)
Q Consensus 145 G~PVV~ 150 (287)
|.-+|-
T Consensus 202 ga~lIN 207 (303)
T PRK06436 202 GLAIIN 207 (303)
T ss_pred CeEEEE
Confidence 544443
No 302
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=28.28 E-value=2.8e+02 Score=23.94 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=51.3
Q ss_pred HHHhcCC---ceEE-ecCCCCHH--HHhhhCCEEEcCCCC----CcchHHHHHHHhcCCeEEeecCCCccccccCCCeEe
Q 023072 98 AAEKLKI---VVRV-YPGRDHAD--LIFHDYKVFLNPSTT----DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRT 167 (287)
Q Consensus 98 ~~~~~~l---~~~v-~g~~~~~~--~~~~~adv~v~ps~~----E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l 167 (287)
.+.++|+ ++.. .|.++... .+++.+++=++-++. -++.-++--|+.+|+|||.-+.|.... ..-.
T Consensus 166 ~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~-----~~~~ 240 (256)
T TIGR00715 166 QALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIP-----GVAI 240 (256)
T ss_pred HHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCC-----CCcc
Confidence 3455555 2323 36666554 888887553333333 256778989999999999999885211 1134
Q ss_pred ecCHHHHHHHHHHHH
Q 023072 168 YDDRNGFVEATLKAL 182 (287)
Q Consensus 168 ~~d~~~l~~~i~~ll 182 (287)
+.+.+++.+.+.+++
T Consensus 241 ~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 241 FDDISQLNQFVARLL 255 (256)
T ss_pred CCCHHHHHHHHHHhc
Confidence 568888888877754
No 303
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.26 E-value=3.8e+02 Score=23.69 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=47.3
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
.+-+++|+|.+.- -.-+..+....+..+.+. ....+..++.+.||++|...-..++ .--|.+--|.-||-
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG~~~~--i~~~~ik~gavVID 228 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNV--LTADMVKPGATVID 228 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCCCcCc--cCHHHcCCCCEEEE
Confidence 4678999998776 455666666667777664 3344445899999999987665443 22377777865543
No 304
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=28.20 E-value=3.4e+02 Score=25.11 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=71.7
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCC---------cCHH---------HHHHHHHhcCCceEEe--cCCCCHH----
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNG---------EDFN---------QIQEAAEKLKIVVRVY--PGRDHAD---- 116 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g---------~~~~---------~l~~~~~~~~l~~~v~--g~~~~~~---- 116 (287)
+++++.|++.+++. |+.|-+ |+| .|.. +|-+.+.+.+.++-+- |.++-.+
T Consensus 203 y~~fd~lleI~k~y-----DvtlSL-GDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~n 276 (432)
T COG0422 203 YEHFDELLEIFKEY-----DVTLSL-GDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEAN 276 (432)
T ss_pred hhhHHHHHHHHHHh-----Ceeeec-cCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHH
Confidence 47888999888765 555544 432 1222 2344556667676665 4454333
Q ss_pred -HHhh----hCCEEEcC-CCCC------c--chHHHHHHHhcCCeEEeecCCC----ccccccCCCeEeecCHHHHHHHH
Q 023072 117 -LIFH----DYKVFLNP-STTD------V--VCTTTAEALAMGKIVVCANHPS----NDFFKQFPNCRTYDDRNGFVEAT 178 (287)
Q Consensus 117 -~~~~----~adv~v~p-s~~E------~--~~~~~~EAma~G~PVV~s~~~~----~e~i~~~~~g~l~~d~~~l~~~i 178 (287)
.++. .+-+|++- -.++ . ..+-..-|.+.|+-.+|.-+|. ...+.+-..|.+. ..++.-.
T Consensus 277 v~l~k~~c~~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHL~LP~~eDV~eGvIa---~kIAAHa 353 (432)
T COG0422 277 VKLQKELCDGAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGADMLCYVTPAEHLGLPNVEDVKEGVIA---YKIAAHA 353 (432)
T ss_pred HHHHHHhcCCCCeeeeCCcccccCCCchHHHHHHHHHHHHhccCceEEecCcHHHcCCCCHHHHHHHHHH---HHHHHHH
Confidence 3333 34566652 2222 1 2334456677899999988776 1122222233221 1233333
Q ss_pred HHHHhCCCC-Cc----cHHHHhcCCHHHHHHHHH
Q 023072 179 LKALAEEPA-LP----TEAQRHQLSWESATERFL 207 (287)
Q Consensus 179 ~~ll~~~~~-~~----~~~~~~~~sw~~~~~~~~ 207 (287)
.++....+. +. ....|.+|+|+...+..+
T Consensus 354 aD~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lal 387 (432)
T COG0422 354 ADLAKGHPGARDRDDAMSKARFEFDWEDQFELAL 387 (432)
T ss_pred HHHhccCcchhhhhHHHHHHHHhCCHHHHHHHhc
Confidence 444443222 11 125667899999876544
No 305
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=28.05 E-value=1.5e+02 Score=27.11 Aligned_cols=56 Identities=21% Similarity=0.099 Sum_probs=39.9
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH---HHhhhCCEEEcCCCCCcchHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~adv~v~ps~~E~~~~~~ 138 (287)
.=.|+|+|+ ++.++.++-+.+..+-+.|+++-.+ .+-..-++=|+.|.+++|-.+.
T Consensus 114 ~g~LlIVGn---R~~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAt 172 (432)
T COG4109 114 PGGLLIVGN---REDIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVAT 172 (432)
T ss_pred CCceEEEec---HHHHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHH
Confidence 346899997 5667777778787777788887666 4444446777777788876553
No 306
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=27.84 E-value=1.4e+02 Score=20.65 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=32.4
Q ss_pred EEEEeCCcC-----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCC
Q 023072 83 VDLYGNGED-----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTD 132 (287)
Q Consensus 83 l~i~G~g~~-----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E 132 (287)
++++|.|-. ...+++.++++++...+. +.....+.....+|+++......
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred EEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 456677754 367888889999776664 33333346677799998865544
No 307
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=27.74 E-value=3.9e+02 Score=22.92 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=41.7
Q ss_pred EEEEEeCCcCHH---HHHHHHHhcCCceEEecCCCCHH---HHhhhCCEEEcCCCCCc---chHHHHHHHhcCCeEEeec
Q 023072 82 EVDLYGNGEDFN---QIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDV---VCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~~~---~l~~~~~~~~l~~~v~g~~~~~~---~~~~~adv~v~ps~~E~---~~~~~~EAma~G~PVV~s~ 152 (287)
++.|+|.|.... .+.....+.|.+........... ..+..-|++|.-|..-. .-..+-.|-..|.+||+--
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT 209 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAIT 209 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEc
Confidence 688889987532 23333444555543332211111 34556799988877522 2344556778899988865
Q ss_pred C
Q 023072 153 H 153 (287)
Q Consensus 153 ~ 153 (287)
.
T Consensus 210 ~ 210 (278)
T PRK11557 210 G 210 (278)
T ss_pred C
Confidence 5
No 308
>PRK09932 glycerate kinase II; Provisional
Probab=27.50 E-value=2.2e+02 Score=26.30 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=49.8
Q ss_pred cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC---------HHHHHHHHHhcCCceEEe-cCCCCH-HHHhhhCCEEEcC
Q 023072 60 WSKGYKELLELLDDHQKELAGLEVDLYGNGED---------FNQIQEAAEKLKIVVRVY-PGRDHA-DLIFHDYKVFLNP 128 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~---------~~~l~~~~~~~~l~~~v~-g~~~~~-~~~~~~adv~v~p 128 (287)
-..|++.+++.+ .+.+...++.|+|.|.|.- .-.+-+++++++..+.++ |.+... +.++..--..+++
T Consensus 265 l~~G~d~v~~~~-~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~~~~~~~~~~g~~~~~~ 343 (381)
T PRK09932 265 IKPGIEIVLNAV-NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFS 343 (381)
T ss_pred EccHHHHHHHhc-ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecccCCChHHHHhcCceEEEE
Confidence 347999999887 4555567788999998752 234677888898887776 665433 3455443223443
Q ss_pred CCCCcchHHHHHHHh
Q 023072 129 STTDVVCTTTAEALA 143 (287)
Q Consensus 129 s~~E~~~~~~~EAma 143 (287)
.... +.++-|||.
T Consensus 344 i~~~--~~~l~~a~~ 356 (381)
T PRK09932 344 ILPR--LAPLAEVLA 356 (381)
T ss_pred cCCC--CCCHHHHHH
Confidence 3333 233445553
No 309
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=27.49 E-value=3e+02 Score=21.53 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=43.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHh-cCCceEEec
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYP 110 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~l~~~v~g 110 (287)
.++||.... ...+...++.+..+++..|+-+++|+|=|-....++.+-+. ..+.++.+.
T Consensus 61 ~vvfVSa~S-~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 61 DVVFVSATS-DNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred ccEEEEEec-chHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 578888764 34567778888888888999999999988887777776553 344444443
No 310
>PRK13243 glyoxylate reductase; Reviewed
Probab=27.39 E-value=2.4e+02 Score=25.31 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=45.1
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCC-------------CHHHHhhhCCEEEc--CCCCCc---chHHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-------------HADLIFHDYKVFLN--PSTTDV---VCTTTAEA 141 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~-------------~~~~~~~~adv~v~--ps~~E~---~~~~~~EA 141 (287)
+-++-|+|-|.--..+.+.+..+|.++.++.... ..++++..||++++ |...++ ++-..+++
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~ 229 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKL 229 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc
Confidence 3578888988766777777788887766653221 11267888898765 333333 44456666
Q ss_pred HhcCCeEEeec
Q 023072 142 LAMGKIVVCAN 152 (287)
Q Consensus 142 ma~G~PVV~s~ 152 (287)
|--|.-+|-+.
T Consensus 230 mk~ga~lIN~a 240 (333)
T PRK13243 230 MKPTAILVNTA 240 (333)
T ss_pred CCCCeEEEECc
Confidence 65555444443
No 311
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=27.21 E-value=1.7e+02 Score=18.63 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=37.3
Q ss_pred EEEEeC-CcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 83 VDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 83 l~i~G~-g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+.+.|- +.+...+.+++..+|. .+.+.+. .....+|. .+..+-+.-.|...|+|||..+
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg--~~~~~lt------~~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGG--KYSKDLT------KKTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT---EEESSSS------TT-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEECCCCHHHHHHHHHHHHHCCC--EEecccc------CCceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 444554 3346788888888774 3444432 24555665 5667788889999999999754
No 312
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=27.15 E-value=3.3e+02 Score=21.85 Aligned_cols=127 Identities=17% Similarity=0.112 Sum_probs=69.5
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhC---CEEEcCCCCCcchHHHHHHHhcCC----eEEe
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDY---KVFLNPSTTDVVCTTTAEALAMGK----IVVC 150 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~a---dv~v~ps~~E~~~~~~~EAma~G~----PVV~ 150 (287)
|+-.|.|+-+... ...+.....+.|..+..-......-...+.. -+.|-.-...+.|+.++|++..-. .||.
T Consensus 8 pd~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvL 87 (182)
T COG4567 8 PDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVL 87 (182)
T ss_pred CCceeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEEEeeecCCCchHHHHHHHhcCCcceEEEE
Confidence 4446777765221 3344444455555443333322111222222 223333345689999999997654 4666
Q ss_pred ecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC-----CccHHHHhcCCHHHHHHHHHH
Q 023072 151 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA-----LPTEAQRHQLSWESATERFLQ 208 (287)
Q Consensus 151 s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~-----~~~~~~~~~~sw~~~~~~~~~ 208 (287)
|..++ .+-++-|..-++.. |.+++..++..--.+... +++ ..+..||++-+-|.+
T Consensus 88 TGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~~d~~~~~~~~pmS---~~rl~WEhIqrvl~e 153 (182)
T COG4567 88 TGYASIATAVEAVKLGACDYLAKPADADDILAALLRREPDEDTAPPENPMS---ADRLRWEHIQRVLEE 153 (182)
T ss_pred ecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhhcCCCcccCCCCCCCc---hhHhhHHHHHHHHHH
Confidence 66655 44555554346654 999988888776332222 333 246789987665554
No 313
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=27.00 E-value=2.4e+02 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=24.4
Q ss_pred HhhhCCEEEcC--------CCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 118 IFHDYKVFLNP--------STTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 118 ~~~~adv~v~p--------s~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
....+|++|-. ...|++...+-..=+.|+|||+-|.|+
T Consensus 116 ~~~~~dvIVDalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 116 EPESADVIVDALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred ccccCCEEEEeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 45667777642 223445444444445999999999976
No 314
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=26.91 E-value=3.1e+02 Score=21.89 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=48.2
Q ss_pred cccC-HHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcCCC
Q 023072 60 WSKG-YKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPST 130 (287)
Q Consensus 60 ~~Kg-~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~ps~ 130 (287)
+-+. ...|.+.+.++.+..+.+.++++-...+.+.+.+.....+..=.+++.-+... ++.....+--.|+.
T Consensus 47 pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~v~~iP~l 119 (157)
T KOG2501|consen 47 PCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYEVKGIPAL 119 (157)
T ss_pred chhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcccCcCcee
Confidence 3344 34677888888888888999999877777777777776555544556655444 66666666555543
No 315
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=26.88 E-value=2.4e+02 Score=27.24 Aligned_cols=113 Identities=9% Similarity=0.062 Sum_probs=64.6
Q ss_pred ccccCHHHHHHHHHHHHHh--------cCCeEEEEEeC----CcCHHHHHHHHHhcCCceEEec----------------
Q 023072 59 VWSKGYKELLELLDDHQKE--------LAGLEVDLYGN----GEDFNQIQEAAEKLKIVVRVYP---------------- 110 (287)
Q Consensus 59 ~~~Kg~~~ll~a~~~l~~~--------~~~~~l~i~G~----g~~~~~l~~~~~~~~l~~~v~g---------------- 110 (287)
....|++.+++++-+.... .++-.+-|+|. ..|..+++++.+.+|+.+.+++
T Consensus 191 s~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~~gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~ 270 (515)
T TIGR01286 191 SHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETYIGNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRM 270 (515)
T ss_pred cHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCCchhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccc
Confidence 3447888888877644321 12344666652 2347889999999999877642
Q ss_pred ---CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 111 ---GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 111 ---~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+..-.+ .-...|.+-|.- ..-.+....++|. +|.|.+....|- | ..+.++|..+|.+++..
T Consensus 271 ~~ggttleei~~a~~A~~~ivl--~~~~~~~~a~~l~~~~g~p~~~~~~Pi---------G--i~~Td~fL~~la~~~g~ 337 (515)
T TIGR01286 271 YAGGTTLEEMKDAPNAEATVLL--QPYTLRKTKEYIEKTWKQETPKLNIPL---------G--VKGTDEFLMKVSEISGQ 337 (515)
T ss_pred cCCCCCHHHHHHhhhCcEEEEE--chhhhHHHHHHHHHHhCCCcccCCCCc---------c--HHHHHHHHHHHHHHHCC
Confidence 222222 333344443332 2222346677766 799987765441 1 12456677777666654
No 316
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.85 E-value=2.5e+02 Score=24.74 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCcCHHH---HHHHHHhcCCceEEecCCCCH--H-HHhhhCCEEEcCCCC-Cc--chH
Q 023072 66 ELLELLDDHQKELAGLEVDLYGNGEDFNQ---IQEAAEKLKIVVRVYPGRDHA--D-LIFHDYKVFLNPSTT-DV--VCT 136 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~G~g~~~~~---l~~~~~~~~l~~~v~g~~~~~--~-~~~~~adv~v~ps~~-E~--~~~ 136 (287)
.+.++...+... .=++.|+|.|..... +.......|....++...... . ..+..-|++|..|.. ++ .=-
T Consensus 30 ~~~~~~~~l~~~--~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 107 (321)
T PRK11543 30 DFVRAANIILHC--EGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDL 107 (321)
T ss_pred HHHHHHHHHHhc--CCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCcHHHHH
Confidence 344555555332 226899999876333 233333455554443211000 0 335566999998886 33 223
Q ss_pred HHHHHHhcCCeEEeecCCC
Q 023072 137 TTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~ 155 (287)
.+-.|-..|+|||+--...
T Consensus 108 ~~~~ak~~g~~vI~iT~~~ 126 (321)
T PRK11543 108 IIPRLEDKSIALLAMTGKP 126 (321)
T ss_pred HHHHHHHcCCeEEEEECCC
Confidence 3446668899999876633
No 317
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=26.51 E-value=4.8e+02 Score=23.53 Aligned_cols=75 Identities=7% Similarity=-0.000 Sum_probs=43.6
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceE---------Eec-C---CCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhc
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVR---------VYP-G---RDHADLIFHDYKVFLNPSTTDVVCTTTAEALAM 144 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~---------v~g-~---~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~ 144 (287)
+|+++++-+-+.. .+....++..++.... +-+ . ....++++..+|+.+..+-.+.---..-.++..
T Consensus 23 ~~d~eLvav~d~~-~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~~~~e~a~~~~~a 101 (341)
T PRK04207 23 QPDMELVGVAKTK-PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGGVGAKNKELYEKA 101 (341)
T ss_pred CCCcEEEEEECCC-hHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCchhhHHHHHHHHHC
Confidence 4788877766532 3444444554432210 000 0 012235677899999887666544445567888
Q ss_pred CCeEEeecC
Q 023072 145 GKIVVCANH 153 (287)
Q Consensus 145 G~PVV~s~~ 153 (287)
|++||.+..
T Consensus 102 Gk~VI~~~~ 110 (341)
T PRK04207 102 GVKAIFQGG 110 (341)
T ss_pred CCEEEEcCC
Confidence 999998864
No 318
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=26.41 E-value=1.6e+02 Score=21.58 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=40.5
Q ss_pred EEEEeCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHh--hhCCEEEcCCCCCcchHHHHHHH--hcCCeEEeec
Q 023072 83 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIF--HDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCAN 152 (287)
Q Consensus 83 l~i~G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~--~~adv~v~ps~~E~~~~~~~EAm--a~G~PVV~s~ 152 (287)
|+++|.|-. .+.+++.+++.|+...+. ......+... ..+|+++...... |=..-++.. ..|+||..-+
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~-~~~~~i~~~~~~~~ipv~~I~ 82 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTK-MYFKQFEEAGAKVGKPVVQIP 82 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHH-HHHHHHHHHhhhcCCCEEEeC
Confidence 566687764 356778888888877763 3333333333 3589888764331 112223333 4688998865
No 319
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.20 E-value=2.8e+02 Score=24.53 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCCC
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPSTT 131 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~~ 131 (287)
..-+.+|+|.+.- -.-+..+....+..+.+... ..+..++.+.||++|...-.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCCC
Confidence 4678999999773 44556666666777777544 33344889999999986544
No 320
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.18 E-value=2.2e+02 Score=25.03 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=34.3
Q ss_pred CCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCC
Q 023072 79 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 79 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps 129 (287)
..-+++|+|.|. --.-+..+....+..+.+... .....+.++.||++|+.+
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~At 210 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAV 210 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEcc
Confidence 356899999986 444555555566666666444 222337789999999987
No 321
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.11 E-value=2.8e+02 Score=24.07 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=5.8
Q ss_pred HHHHHHHHhcCCc
Q 023072 93 NQIQEAAEKLKIV 105 (287)
Q Consensus 93 ~~l~~~~~~~~l~ 105 (287)
+.+.+.+.++++.
T Consensus 130 ~~~~~~~~~~gl~ 142 (259)
T PF00290_consen 130 EELREAAKKHGLD 142 (259)
T ss_dssp HHHHHHHHHTT-E
T ss_pred HHHHHHHHHcCCe
Confidence 3444455555553
No 322
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=25.93 E-value=2.4e+02 Score=25.58 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=47.5
Q ss_pred eEEecCCCCHH----HHhhhCCEEEcCCCCCc-chHHHHHH-----HhcCCeEEeecC--CC-ccccccCCCeEeecCHH
Q 023072 106 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 172 (287)
Q Consensus 106 ~~v~g~~~~~~----~~~~~adv~v~ps~~E~-~~~~~~EA-----ma~G~PVV~s~~--~~-~e~i~~~~~g~l~~d~~ 172 (287)
+.+.|.++-.. ..+..+|++|.-++-.+ -|++++.. +..|+|+|-|.. |. .++-..+. .|+.
T Consensus 240 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg~-----A~~~ 314 (332)
T PRK03743 240 INVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIAGTGK-----ASSV 314 (332)
T ss_pred CcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhhcCCC-----CCHH
Confidence 44678877665 45566899988766555 34554433 467999998866 33 44443321 4899
Q ss_pred HHHHHHHHHHh
Q 023072 173 GFVEATLKALA 183 (287)
Q Consensus 173 ~l~~~i~~ll~ 183 (287)
++.++|.-+..
T Consensus 315 S~~~Ai~lA~~ 325 (332)
T PRK03743 315 SMEEAILLAAK 325 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987654
No 323
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.86 E-value=5.2e+02 Score=23.64 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=58.4
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeC-------------CcC-HHHHHHHHHhcCCceEEecC-CCCHH
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-------------GED-FNQIQEAAEKLKIVVRVYPG-RDHAD 116 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-------------g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~ 116 (287)
++.++...--.+-+.+++....+.+. .+++.-.|. |.+ .+.+.+..+++|+.+..... ..+.+
T Consensus 102 l~vIAGPCsIEs~eq~l~~A~~lk~~--g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~ 179 (352)
T PRK13396 102 VVVVAGPCSVENEEMIVETAKRVKAA--GAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGIITEVMDAADLE 179 (352)
T ss_pred EEEEEeCCcccCHHHHHHHHHHHHHc--CCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCCHHHHH
Confidence 33343344445777788888887665 344444332 111 34466667788877433222 23333
Q ss_pred HHhhhCCEEEcCCCC-CcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.+...+|++-.+|+. ..|++ +-++...|+||+.+..
T Consensus 180 ~~~~~~d~lqIga~~~~n~~L-L~~va~t~kPVllk~G 216 (352)
T PRK13396 180 KIAEVADVIQVGARNMQNFSL-LKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHhhCCeEEECcccccCHHH-HHHHHccCCeEEEeCC
Confidence 344448999999886 45554 4455578999999864
No 324
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.84 E-value=3.9e+02 Score=22.22 Aligned_cols=79 Identities=19% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEE--eCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 66 ELLELLDDHQKELAGLEVDLY--GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~--G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
..+++++++.+++|+ +++ |+--+.+.+++ +.+.|-+..+.+..+..- ++-+.+++.++|--. .+.-+++|+
T Consensus 41 ~a~~~I~~l~~~~~~---~~vGAGTVl~~e~a~~-ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~--TptEi~~A~ 114 (201)
T PRK06015 41 AALDAIRAVAAEVEE---AIVGAGTILNAKQFED-AAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAA--TPSEVMALR 114 (201)
T ss_pred cHHHHHHHHHHHCCC---CEEeeEeCcCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCC--CHHHHHHHH
Confidence 344555556666664 233 44445555544 444565544445554443 666667777766332 356688888
Q ss_pred hcCCeEEe
Q 023072 143 AMGKIVVC 150 (287)
Q Consensus 143 a~G~PVV~ 150 (287)
.+|.-+|=
T Consensus 115 ~~Ga~~vK 122 (201)
T PRK06015 115 EEGYTVLK 122 (201)
T ss_pred HCCCCEEE
Confidence 88887763
No 325
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=25.79 E-value=2.3e+02 Score=25.53 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEeCCcCHHHHHHHHHhcCCceEEecCCC-----------CHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhcC
Q 023072 82 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD-----------HADLIFHDYKVFLN--PSTTDV---VCTTTAEALAMG 145 (287)
Q Consensus 82 ~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~-----------~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~G 145 (287)
++-|+|-|.--..+.+.+...|..+.++.... ..++++..||++++ |...++ +.-.++..|.-|
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~g 227 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKG 227 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCC
Q ss_pred CeEEeecCCC
Q 023072 146 KIVVCANHPS 155 (287)
Q Consensus 146 ~PVV~s~~~~ 155 (287)
..+|.+..|.
T Consensus 228 avlIN~aRG~ 237 (330)
T PRK12480 228 AILVNAARGA 237 (330)
T ss_pred cEEEEcCCcc
No 326
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=25.70 E-value=4.6e+02 Score=24.81 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=66.1
Q ss_pred cccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEE-ecCCCCH----HHHhhhC----CEEEcC
Q 023072 58 MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRV-YPGRDHA----DLIFHDY----KVFLNP 128 (287)
Q Consensus 58 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v-~g~~~~~----~~~~~~a----dv~v~p 128 (287)
+..++|-+.+.+++.+- +++-++.=.|...-.+.+.+.+.. .++| +++..+. .+-|..+ .+++.+
T Consensus 88 fvg~tGg~If~emm~rq-----nV~tVFgYPGGAilpv~dAi~rS~-~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvT 161 (675)
T KOG4166|consen 88 FVGRTGGDIFVEMMERQ-----NVETVFGYPGGAILPVHDAITRSS-SFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVT 161 (675)
T ss_pred ccCCchhHHHHHHHHhc-----CCceEeecCCcceeehHhhhhcCc-cccccccccccccchhhhhhhhhcCCCcEEEEe
Confidence 34568999999988533 555444312222222333333333 3334 3333222 2344443 678887
Q ss_pred CCCC--cchHHHHHHHhcCCeEEeecCCC------cc------ccccCCCe----EeecCHHHHHHHHHHHHh
Q 023072 129 STTD--VVCTTTAEALAMGKIVVCANHPS------ND------FFKQFPNC----RTYDDRNGFVEATLKALA 183 (287)
Q Consensus 129 s~~E--~~~~~~~EAma~G~PVV~s~~~~------~e------~i~~~~~g----~l~~d~~~l~~~i~~ll~ 183 (287)
|-.- ..=..+.+|+|=|+|.|+...-. .+ ++.-...| +++.|++++-..|.++..
T Consensus 162 SGPGATNvvtp~ADAlaDg~PlVvftGQVptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFe 234 (675)
T KOG4166|consen 162 SGPGATNVVTPLADALADGVPLVVFTGQVPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFE 234 (675)
T ss_pred cCCCcccccchhhHHhhcCCcEEEEecccchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhh
Confidence 7653 35566899999999999865311 11 11111122 345688888888887765
No 327
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.68 E-value=3.5e+02 Score=25.65 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=62.3
Q ss_pred ccCHHHHHHHHHHHHHh--cCCeEEEEEeC---CcCHHHHHHHHHhcCCceEEecCC------------------CCHHH
Q 023072 61 SKGYKELLELLDDHQKE--LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRVYPGR------------------DHADL 117 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~--~~~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v~g~~------------------~~~~~ 117 (287)
..|++..++++-+.... .++-.+-|+|. ..|.++++++.+++|+.+.++... ...++
T Consensus 148 ~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tlee 227 (461)
T TIGR02931 148 ITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIED 227 (461)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHH
Confidence 46888887776533211 12334666663 235788999999999987664211 12223
Q ss_pred HhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 118 IFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 118 ~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+.+....-++.......+..+.|+|. +|+|-+....+- |+ .+.++|...|.+++..
T Consensus 228 i~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~~~~~~pi---------Gi--~~T~~fl~~l~~~~g~ 285 (461)
T TIGR02931 228 LTDTANAKGTIALNRYEGMKAADYLQKKFDVPAIIGPTPI---------GI--RNTDTFLQNLKKMTGK 285 (461)
T ss_pred HHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCeeccCCCc---------ch--HHHHHHHHHHHHHHCC
Confidence 33333333333233234566777774 699988654321 11 2456666666666654
No 328
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.38 E-value=95 Score=26.94 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=32.7
Q ss_pred CHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 114 HADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 114 ~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+.+++...+|+.|-.|..+..--.+..|+..|+|||+...+
T Consensus 61 d~~~l~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg 101 (266)
T TIGR00036 61 DLEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTG 101 (266)
T ss_pred CHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCC
Confidence 33444345899999888888888899999999999987664
No 329
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=25.18 E-value=2.4e+02 Score=24.82 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=41.3
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCC---------------H--HHHhhhCCEEEcCCCCCcchHHHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH---------------A--DLIFHDYKVFLNPSTTDVVCTTTAEAL 142 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~---------------~--~~~~~~adv~v~ps~~E~~~~~~~EAm 142 (287)
+-++.|+|.|.--..+-..+..++.++.++..... . ++++..+|++++..-...+.-..++.|
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~ 230 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKL 230 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcC
Confidence 56889999987656666666777776666533211 1 156678888888653322333445555
Q ss_pred hcCCeEE
Q 023072 143 AMGKIVV 149 (287)
Q Consensus 143 a~G~PVV 149 (287)
.-|.-+|
T Consensus 231 k~~aliI 237 (287)
T TIGR02853 231 PKHAVII 237 (287)
T ss_pred CCCeEEE
Confidence 5444333
No 330
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.18 E-value=6.4e+02 Score=24.51 Aligned_cols=52 Identities=13% Similarity=-0.162 Sum_probs=35.0
Q ss_pred CcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHh
Q 023072 132 DVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALA 183 (287)
Q Consensus 132 E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~ 183 (287)
|..-..+.++-+.|+-||..+.-. ..-..-+-+|.+.-+.+++..++.+++.
T Consensus 142 ~e~~~~v~~lk~~G~~~vvG~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~ 194 (538)
T PRK15424 142 EDARGQINELKANGIEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFEDALD 194 (538)
T ss_pred HHHHHHHHHHHHCCCCEEEcCchHHHHHHHhCCceEEecCHHHHHHHHHHHHH
Confidence 344566788889999888877543 3333444566444456888888888765
No 331
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.14 E-value=4.2e+02 Score=22.40 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=19.0
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+|+.....-+++..-.==-..|+|||+|+...
T Consensus 183 iFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT 214 (238)
T COG3473 183 IFISCTNLRTFEIIEKLERDTGVPVVSSNQAT 214 (238)
T ss_pred EEEEeeccccHHHHHHHHHHhCCceeeccHHH
Confidence 35555544554433222247899999998744
No 332
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=24.95 E-value=2.7e+02 Score=24.93 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=46.5
Q ss_pred CeEEEEEeCCcCHHHHHHHHH-hcCCceEEecCCC-------------CHHHHhhhCCEEEc--CCCCCc---chHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAE-KLKIVVRVYPGRD-------------HADLIFHDYKVFLN--PSTTDV---VCTTTAE 140 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~-~~~l~~~v~g~~~-------------~~~~~~~~adv~v~--ps~~E~---~~~~~~E 140 (287)
.-++-|+|-|.=-..+.+.++ .+|.++.++.... ..+++++.||++++ |...|+ ++-..++
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~ 224 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFA 224 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHh
Confidence 356788888876566766676 6777766553221 11378899999764 544454 5566777
Q ss_pred HHhcCCeEEeecC
Q 023072 141 ALAMGKIVVCANH 153 (287)
Q Consensus 141 Ama~G~PVV~s~~ 153 (287)
.|--|.-+|-+..
T Consensus 225 ~mk~ga~lIN~aR 237 (323)
T PRK15409 225 KMKSSAIFINAGR 237 (323)
T ss_pred cCCCCeEEEECCC
Confidence 7765555554443
No 333
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.87 E-value=4.4e+02 Score=22.47 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=20.6
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
..|.++. +...+...-.+-++...|+|||+-+...
T Consensus 55 ~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~~ 90 (288)
T cd01538 55 GVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRLI 90 (288)
T ss_pred CCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCCC
Confidence 3455544 3323333334556677899999987643
No 334
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=24.66 E-value=71 Score=24.63 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHhhhCCEEEcCCCCCc---ch--HHHHHHHhcCCeEEeecCCC-ccccccC--CCeEeecCHHHHHHHHHHHH
Q 023072 117 LIFHDYKVFLNPSTTDV---VC--TTTAEALAMGKIVVCANHPS-NDFFKQF--PNCRTYDDRNGFVEATLKAL 182 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~---~~--~~~~EAma~G~PVV~s~~~~-~e~i~~~--~~g~l~~d~~~l~~~i~~ll 182 (287)
.++..||+.|.- +-|- +- +-.--|.|+|+|.|.-..+. .--++.- ..-.++.++++.++.|..++
T Consensus 68 ~li~~aDvVVvr-FGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 68 TLIEKADVVVVR-FGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHhhCCEEEEE-echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 678889998762 1122 21 22345789999999987765 1112111 11244569999999888775
No 335
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=24.53 E-value=4.7e+02 Score=27.78 Aligned_cols=69 Identities=9% Similarity=0.077 Sum_probs=42.2
Q ss_pred EEEEeCCcCHHHHHHHHHhcCCceEE-ecCCCCHH---HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 83 VDLYGNGEDFNQIQEAAEKLKIVVRV-YPGRDHAD---LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 83 l~i~G~g~~~~~l~~~~~~~~l~~~v-~g~~~~~~---~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++.+.+.. .+..+++++.+. ++.. ...+.+.+ ++++.+|+.|+..-..--.-.+..|+..|+++++...
T Consensus 608 lV~VaD~~-~~~a~~la~~~~-~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky 680 (1042)
T PLN02819 608 HVIVASLY-LKDAKETVEGIE-NAEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTASY 680 (1042)
T ss_pred EEEEECCC-HHHHHHHHHhcC-CCceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECcC
Confidence 45555543 355666666652 2212 12133333 5557899998866554445667788899999999874
No 336
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=24.52 E-value=2.8e+02 Score=24.95 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=47.7
Q ss_pred eEEecCCCCHH----HHhhhCCEEEcCCCCCc-chHHHHHH-----HhcCCeEEeecC--CC-ccccccCCCeEeecCHH
Q 023072 106 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 172 (287)
Q Consensus 106 ~~v~g~~~~~~----~~~~~adv~v~ps~~E~-~~~~~~EA-----ma~G~PVV~s~~--~~-~e~i~~~~~g~l~~d~~ 172 (287)
+.+.|.++-.. .....+|++|.-++-.+ -|++++.. +..|+|+|-|.. |. .++-..+ ..|+.
T Consensus 233 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg-----~A~~~ 307 (320)
T TIGR00557 233 IDLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIAGKG-----KADPG 307 (320)
T ss_pred CcccCCCCchhhcccccccCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHH
Confidence 45678876555 45556799988766655 45555533 467999998876 33 4443332 14889
Q ss_pred HHHHHHHHHHh
Q 023072 173 GFVEATLKALA 183 (287)
Q Consensus 173 ~l~~~i~~ll~ 183 (287)
++.++|..+..
T Consensus 308 S~~~Ai~~A~~ 318 (320)
T TIGR00557 308 SLIAAIKLAIE 318 (320)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 337
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.46 E-value=4.1e+02 Score=21.98 Aligned_cols=62 Identities=11% Similarity=-0.094 Sum_probs=33.6
Q ss_pred hCCEEEcCCCC-CcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 121 DYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 121 ~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
.+|.++..+.. +... .+-++...|+|||..+..... ........++.+....+...++....
T Consensus 55 ~vdgiii~~~~~~~~~-~~~~~~~~~ipvV~~~~~~~~---~~~~~v~~d~~~~~~~~~~~l~~~g~ 117 (268)
T cd06289 55 GVAGIILCPAAGTSPD-LLKRLAESGIPVVLVAREVAG---APFDYVGPDNAAGARLATEHLISLGH 117 (268)
T ss_pred CCCEEEEeCCCCccHH-HHHHHHhcCCCEEEEeccCCC---CCCCEEeecchHHHHHHHHHHHHCCC
Confidence 35666554333 3322 455677889999998753211 11122334455666666666666543
No 338
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=24.30 E-value=4.4e+02 Score=22.77 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=54.6
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEE-eC----Cc-CHHHHHHHHHhcCCceEEecC--CCCHH--HHhh
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLY-GN----GE-DFNQIQEAAEKLKIVVRVYPG--RDHAD--LIFH 120 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~----g~-~~~~l~~~~~~~~l~~~v~g~--~~~~~--~~~~ 120 (287)
+|+|+|-+.-.-|...+.+.+++++++++ ..|+|+ |+ |. -.+..-+....++.+....|. .++.+ .++.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~-~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTlGNH~fD~gel~~~l~ 79 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYK-IDFVIANGENAAGGKGITPKIAKELLSAGVDVITMGNHTWDKKEILDFID 79 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCC-CCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEecccccCcchHHHHHh
Confidence 38999999999999999999999988764 346665 43 11 134555666777877555665 34444 6777
Q ss_pred hCCEEEcCCCC
Q 023072 121 DYKVFLNPSTT 131 (287)
Q Consensus 121 ~adv~v~ps~~ 131 (287)
..+..+.|..+
T Consensus 80 ~~~~~l~~aN~ 90 (255)
T cd07382 80 EEPRLLRPANY 90 (255)
T ss_pred cCcCceEeeec
Confidence 77655665543
No 339
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=24.23 E-value=3.8e+02 Score=22.14 Aligned_cols=80 Identities=24% Similarity=0.166 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHhcCC
Q 023072 68 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 146 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma~G~ 146 (287)
+++++.+++++|++. +=+|+--+.+.+++ +.+.|.+..+.+..+..- ++-+..++.+.|--. .+.-+..|+.+|.
T Consensus 47 ~~~I~~l~~~~p~~~-vGAGTV~~~e~a~~-a~~aGA~FivSP~~~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~ 122 (196)
T PF01081_consen 47 LEAIEALRKEFPDLL-VGAGTVLTAEQAEA-AIAAGAQFIVSPGFDPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGA 122 (196)
T ss_dssp HHHHHHHHHHHTTSE-EEEES--SHHHHHH-HHHHT-SEEEESS--HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCCe-eEEEeccCHHHHHH-HHHcCCCEEECCCCCHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCC
Confidence 455555566678742 22355556566554 445676655556655443 666677887776322 2466788888888
Q ss_pred eEEee
Q 023072 147 IVVCA 151 (287)
Q Consensus 147 PVV~s 151 (287)
-+|=-
T Consensus 123 ~~vK~ 127 (196)
T PF01081_consen 123 DIVKL 127 (196)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77743
No 340
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=24.16 E-value=2.2e+02 Score=25.69 Aligned_cols=45 Identities=22% Similarity=0.079 Sum_probs=34.9
Q ss_pred ecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC
Q 023072 57 KMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI 104 (287)
Q Consensus 57 ~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l 104 (287)
-+.-..+...++++.....++++.++++++|+ .+.+++.+.+++.
T Consensus 8 amGgD~~p~~vl~aa~~a~~~~~~~~~iLvG~---~~~I~~~l~~~~~ 52 (334)
T PRK05331 8 AMGGDFGPEVVVPGALQALKEHPDLEIILVGD---EEKIKPLLAKKPD 52 (334)
T ss_pred cCCCccCHHHHHHHHHHHHhcCCCeEEEEEeC---HHHHHHHHHhcCC
Confidence 45667899999999988888877899999997 4566666666543
No 341
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=24.03 E-value=1.9e+02 Score=24.51 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=40.0
Q ss_pred EecccccC-HHHHHHHHHHHHHhcCCeEEEEEeCCc--CHHH---HHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 56 GKMVWSKG-YKELLELLDDHQKELAGLEVDLYGNGE--DFNQ---IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 56 G~~~~~Kg-~~~ll~a~~~l~~~~~~~~l~i~G~g~--~~~~---l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
-.++|.|- .+...+.++++.+.. ...+++|.-. ..+. +-+.++++.+.+..+++- .+.+-..+|.+++||
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~~g--tdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~--~~~i~~~aDa~l~~s 79 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAESG--TDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSN--PTNVSRDADALFFPS 79 (223)
T ss_pred eeECCCCCCccccHHHHHHHHhcC--CCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCC--ccccCcCCCEEEEEE
Confidence 34667763 233334455555443 3446665533 2333 344566677776655432 234567799999998
Q ss_pred CC
Q 023072 130 TT 131 (287)
Q Consensus 130 ~~ 131 (287)
..
T Consensus 80 vl 81 (223)
T TIGR01768 80 VL 81 (223)
T ss_pred ee
Confidence 64
No 342
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=23.98 E-value=2.4e+02 Score=19.08 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=36.9
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCC-cCH-HHHHHHHHhcCCceEEe
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNG-EDF-NQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g-~~~-~~l~~~~~~~~l~~~v~ 109 (287)
+|++.|.-. ....+.+..++.++..++|+.. +|-|.. .-- .-..+.+.+.+.....+
T Consensus 5 rVli~GgR~-~~D~~~i~~~Ld~~~~~~~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~ 63 (71)
T PF10686_consen 5 RVLITGGRD-WTDHELIWAALDKVHARHPDMV-LVHGGAPKGADRIAARWARERGVPVIRF 63 (71)
T ss_pred EEEEEECCc-cccHHHHHHHHHHHHHhCCCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEe
Confidence 577777543 4588889999999998888765 444554 222 33455667777654444
No 343
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=23.82 E-value=4.6e+02 Score=23.87 Aligned_cols=73 Identities=7% Similarity=-0.073 Sum_probs=47.1
Q ss_pred eEEecCCCCHH----HHh--------hhCCEEEcCCCCCc-chHHHHHH-----HhcCCeEEeecC--CC-ccccccCCC
Q 023072 106 VRVYPGRDHAD----LIF--------HDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPN 164 (287)
Q Consensus 106 ~~v~g~~~~~~----~~~--------~~adv~v~ps~~E~-~~~~~~EA-----ma~G~PVV~s~~--~~-~e~i~~~~~ 164 (287)
+.++|.++-.. ... ...|++|.-++-.+ -|++++.. +..|+|+|-|.. |. .++-..+
T Consensus 245 ~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIAGkg-- 322 (345)
T PRK02746 245 IQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIAGKG-- 322 (345)
T ss_pred ceeeCCCCchhhccccccccccccccCCCCEEEECcccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhhcCC--
Confidence 56788877665 222 56899988766554 34444432 467999998866 33 4444332
Q ss_pred eEeecCHHHHHHHHHHHHh
Q 023072 165 CRTYDDRNGFVEATLKALA 183 (287)
Q Consensus 165 g~l~~d~~~l~~~i~~ll~ 183 (287)
..|+.++.++|..+..
T Consensus 323 ---~A~~~S~~~Ai~lA~~ 338 (345)
T PRK02746 323 ---IARPQSMKAAIKLAWE 338 (345)
T ss_pred ---CCCHHHHHHHHHHHHH
Confidence 1489999999987654
No 344
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=23.63 E-value=3.5e+02 Score=25.62 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=44.0
Q ss_pred HHhhhCCEEE--------cCCCCC--c---chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHH
Q 023072 117 LIFHDYKVFL--------NPSTTD--V---VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVE 176 (287)
Q Consensus 117 ~~~~~adv~v--------~ps~~E--~---~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~ 176 (287)
+-+..+|+.+ ||.-.| + +|++++|..-+..-+|+-.. +| ++.+-...+-.++.|.++-.+
T Consensus 377 ~~F~~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~nt~MlfGDAK~~~~ 456 (462)
T PRK09444 377 DDFADTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVD 456 (462)
T ss_pred cccccCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecCCceEEeccHHHHHH
Confidence 3455667754 676543 2 99999999999988887665 33 666665555677778887776
Q ss_pred HHHH
Q 023072 177 ATLK 180 (287)
Q Consensus 177 ~i~~ 180 (287)
.+..
T Consensus 457 ~l~~ 460 (462)
T PRK09444 457 AILK 460 (462)
T ss_pred HHHH
Confidence 6543
No 345
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=23.41 E-value=1.1e+02 Score=26.36 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=30.1
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR 112 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~ 112 (287)
.|..+|+|+|.|+.-..+.+++..+|..+.++...
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence 46789999999999999999999999988887433
No 346
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=23.39 E-value=79 Score=26.19 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=15.8
Q ss_pred HHHHHHhcCCeEEeecCCC
Q 023072 137 TTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~ 155 (287)
.++|++..|+|||..|...
T Consensus 3 ~ai~al~~G~~Viv~D~~~ 21 (194)
T PF00926_consen 3 EAIEALKAGKPVIVVDDED 21 (194)
T ss_dssp HHHHHHHTTS-EEEECSST
T ss_pred HHHHHHHCCCeEEEEeCCC
Confidence 4789999999999999765
No 347
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=23.39 E-value=2.5e+02 Score=25.07 Aligned_cols=70 Identities=16% Similarity=0.331 Sum_probs=43.4
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC-------------CCHHHHhhhCCEEEc--CCCCCcchH---HHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR-------------DHADLIFHDYKVFLN--PSTTDVVCT---TTAEA 141 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~-------------~~~~~~~~~adv~v~--ps~~E~~~~---~~~EA 141 (287)
+-++-|+|-|.=-..+.+.+..+|.++.++... ...++++..||++++ |...++.++ ..++.
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~ 215 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQ 215 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhc
Confidence 457889999876677777778888877665321 112377889998775 444454333 45555
Q ss_pred HhcCCeEE
Q 023072 142 LAMGKIVV 149 (287)
Q Consensus 142 ma~G~PVV 149 (287)
|--|.-+|
T Consensus 216 mk~ga~lI 223 (312)
T PRK15469 216 LPDGAYLL 223 (312)
T ss_pred CCCCcEEE
Confidence 54444333
No 348
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=23.30 E-value=2.8e+02 Score=23.50 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=43.8
Q ss_pred eEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHh-hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 81 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 81 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~-~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++++-+-+. +.+..++++++++. .+ +.+.++++ ...|+.+..+-.....--...++..|++|+|-..
T Consensus 2 ~eLvaV~D~-~~e~a~~~a~~~g~--~~---~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~ 69 (229)
T TIGR03855 2 FEIAAVYDR-NPKDAKELAERCGA--KI---VSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSV 69 (229)
T ss_pred eEEEEEECC-CHHHHHHHHHHhCC--ce---ECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECC
Confidence 344444443 34667777777663 22 33444455 4579988887777767778889999999999544
No 349
>TIGR00182 plsX fatty acid/phospholipid synthesis protein PlsX. This protein of fatty acid/phospholipid biosynthesis, called PlsX after the member in Streptococcus pneumoniae, is proposed to be a phosphate acyltransferase that partners with PlsY (TIGR00023) in a two-step 1-acylglycerol-3-phosphate biosynthesis pathway alternative to the one-step PlsB (EC 2.3.1.15) pathway.
Probab=23.12 E-value=2.9e+02 Score=24.83 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEe
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~ 109 (287)
..+...++++......+.++++++++|+ .+.+++.+++++.+++++
T Consensus 3 D~~p~~vv~aa~~a~~~~~~~~~iLvGd---~~~I~~~l~~~~~~i~Ii 48 (322)
T TIGR00182 3 DHAPSEVIDGVLKYASANQDLHIILVGD---KDAIEPHLDKLPKNITII 48 (322)
T ss_pred CcChHHHHHHHHHHHHhCCCceEEEEcC---HHHHHHHHHhCCCCcEEE
Confidence 3577888888887445567899999997 456666666665556664
No 350
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=23.05 E-value=1.1e+02 Score=21.96 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=31.2
Q ss_pred EEEEeCCcC-----HHHHHHHHHhcCCceEE-ecCCCCHHHHhhhCCEEEcCCC
Q 023072 83 VDLYGNGED-----FNQIQEAAEKLKIVVRV-YPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 83 l~i~G~g~~-----~~~l~~~~~~~~l~~~v-~g~~~~~~~~~~~adv~v~ps~ 130 (287)
|..+|+|-. ...+++..++++....+ .-..+........+|+++....
T Consensus 5 L~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~~ 58 (93)
T COG3414 5 LAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTSTK 58 (93)
T ss_pred EEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEehH
Confidence 455688765 45688888888886444 2334444467778898876443
No 351
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.99 E-value=1.6e+02 Score=21.06 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=31.7
Q ss_pred EEEEeCCcC-----HHHHHHHHHhcCCceEEec-CCCCHHHHhhhCCEEEcCCC
Q 023072 83 VDLYGNGED-----FNQIQEAAEKLKIVVRVYP-GRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 83 l~i~G~g~~-----~~~l~~~~~~~~l~~~v~g-~~~~~~~~~~~adv~v~ps~ 130 (287)
|+++|.|-. ...+++..++.|.++.+.. .....+.....+|+++.++.
T Consensus 6 LvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~ 59 (94)
T PRK10310 6 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTAR 59 (94)
T ss_pred EEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCc
Confidence 556688764 3567788888888877753 33333345577898877654
No 352
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=22.99 E-value=3.6e+02 Score=23.02 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=10.5
Q ss_pred HHHHhcCCeEEeecCC
Q 023072 139 AEALAMGKIVVCANHP 154 (287)
Q Consensus 139 ~EAma~G~PVV~s~~~ 154 (287)
+|.. .|+|||+||.-
T Consensus 201 lE~~-lGkPVlsSNqa 215 (239)
T TIGR02990 201 IEQA-IGKPVVTSNQA 215 (239)
T ss_pred HHHH-HCCCEEEHHHH
Confidence 3443 79999988863
No 353
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=22.96 E-value=2.9e+02 Score=22.55 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCC----------CcchHHHHHHHhcCCeEEeecCCC
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTT----------DVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~----------E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
.+.+...+.+..+.+....+ .+ -+..+|.+|+|--. +.+--.+.+++..|+|+++-=.|.
T Consensus 18 ~~~~~l~~~g~~~~~~~~~~-~~-~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~ 87 (200)
T PRK13527 18 ALKRALDELGIDGEVVEVRR-PG-DLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGL 87 (200)
T ss_pred HHHHHHHhcCCCeEEEEeCC-hH-HhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHH
Confidence 45555566665555432211 12 24567777766421 122344667788999998864443
No 354
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=22.82 E-value=1.3e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.2
Q ss_pred EEEEeCCcCHHHHHHHHHhcCCceEEecCC
Q 023072 83 VDLYGNGEDFNQIQEAAEKLKIVVRVYPGR 112 (287)
Q Consensus 83 l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~ 112 (287)
|+|+|.|+.-..+-+++..+|..+.+....
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 688999999999999999999888887443
No 355
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=22.74 E-value=6.7e+02 Score=23.84 Aligned_cols=153 Identities=14% Similarity=0.197 Sum_probs=84.1
Q ss_pred hhccCCcEEeeccCCCCccccCcchHHHh---hcCCCCCCCcEEEEE--ecc--cccCHHHHHHHHHH--HHHhc--C--
Q 023072 13 QEYANSIICNVHGVNPKFLEIGKKKKEQQ---QNGTHAFAKGAYYIG--KMV--WSKGYKELLELLDD--HQKEL--A-- 79 (287)
Q Consensus 13 ~~~~~~~i~vi~gvd~~~~~~~~~~~~~~---~~~~~~~~~~i~~vG--~~~--~~Kg~~~ll~a~~~--l~~~~--~-- 79 (287)
..++++-+.++.+.-++.+..+-..-... ..+. .|+.+- .+. ..||.+..+.++.. +.... .
T Consensus 94 ~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gi-----pVV~v~~~Gf~~~~tqg~d~~Laa~~~~~~~~~~~~~~~ 168 (457)
T CHL00073 94 KDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGI-----PIVVARANGLDYAFTQGEDTVLAAMAHRCPEQEVSTSES 168 (457)
T ss_pred HhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCC-----CEEEEeCCCccCcCCcchhHHHHHhHHhhhhhhcCcccc
Confidence 44555666666776666664443222111 1122 244332 444 37999999988865 32110 0
Q ss_pred ------------------------CeEEEEEeCCcC--HHHHHHHHHhcCCceEEe-cCCCCHH-HHhhhCCEEEcCCCC
Q 023072 80 ------------------------GLEVDLYGNGED--FNQIQEAAEKLKIVVRVY-PGRDHAD-LIFHDYKVFLNPSTT 131 (287)
Q Consensus 80 ------------------------~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~-g~~~~~~-~~~~~adv~v~ps~~ 131 (287)
.-.+.|+|.-++ ...++.+.+++|+++..+ +.....+ .-+..+ +++++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~~~-~~~c~~-- 245 (457)
T CHL00073 169 KETKQKTQSSLFSNKEKSLVKYKTHPPLVLFGSLPSTVASQLTLELKRQGIKVSGWLPSQRYTDLPSLGEG-VYVCGV-- 245 (457)
T ss_pred ccccccccccccccccccccccCCCCcEEEEEecCcccHHHHHHHHHHcCCeEeEEeCCCCHHHHHhhCcc-cEEEEc--
Confidence 114888898553 678899999999887654 4223333 333323 232221
Q ss_pred CcchHHHHHHH--hcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 132 DVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 132 E~~~~~~~EAm--a~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
-+|....+.++ -+|+|.+....+ + | .++.+++.++|.+++..
T Consensus 246 ~P~ls~aa~~Le~~~gvp~~~~P~P----i-----G--i~~Td~fLr~Ia~~~G~ 289 (457)
T CHL00073 246 NPFLSRTATTLMRRRKCKLIGAPFP----I-----G--PDGTRAWIEKICSVFGI 289 (457)
T ss_pred CcchHHHHHHHHHHhCCceeecCCc----C-----c--HHHHHHHHHHHHHHhCc
Confidence 12222444555 579898887655 1 1 13667777777777664
No 356
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.73 E-value=2.6e+02 Score=22.75 Aligned_cols=68 Identities=18% Similarity=0.239 Sum_probs=43.3
Q ss_pred HHhhhCCEEEcCC------CCCcchHHHHHHHhcCCeEEeecC-CC-cc---ccccCCCeEe-ec--CHHHHHHHHHHHH
Q 023072 117 LIFHDYKVFLNPS------TTDVVCTTTAEALAMGKIVVCANH-PS-ND---FFKQFPNCRT-YD--DRNGFVEATLKAL 182 (287)
Q Consensus 117 ~~~~~adv~v~ps------~~E~~~~~~~EAma~G~PVV~s~~-~~-~e---~i~~~~~g~l-~~--d~~~l~~~i~~ll 182 (287)
..+..||+.|.-- .+-.|.-.+-|.|-|++|+|++=+ -+ .. .+.....-++ .+ |-+.+...|..+|
T Consensus 96 rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 96 RALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVL 175 (179)
T ss_pred HHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHh
Confidence 4556679988621 123466778899999999999977 32 22 3333222233 22 7778888888877
Q ss_pred hC
Q 023072 183 AE 184 (287)
Q Consensus 183 ~~ 184 (287)
..
T Consensus 176 ~~ 177 (179)
T COG1618 176 KG 177 (179)
T ss_pred cc
Confidence 65
No 357
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=22.67 E-value=3.3e+02 Score=25.72 Aligned_cols=121 Identities=9% Similarity=0.081 Sum_probs=67.5
Q ss_pred cEEEEEec----ccccCHHHHHHHHHH-HHHh-cCCeEEEEEeCC---cCHHHHHHHHHhcCCceEEec-----------
Q 023072 51 GAYYIGKM----VWSKGYKELLELLDD-HQKE-LAGLEVDLYGNG---EDFNQIQEAAEKLKIVVRVYP----------- 110 (287)
Q Consensus 51 ~i~~vG~~----~~~Kg~~~ll~a~~~-l~~~-~~~~~l~i~G~g---~~~~~l~~~~~~~~l~~~v~g----------- 110 (287)
.++++..- ....|++..++++-+ +... .++-.+-|+|.- .|.++++++.+++|+.+.++.
T Consensus 127 ~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~ 206 (454)
T cd01973 127 HLIPVHTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANILMDTEDFDSPMLP 206 (454)
T ss_pred eEEEeeCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEeeccccccCCCCC
Confidence 46665532 333688888877654 3221 123346666532 346889999999999877652
Q ss_pred --------CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHHH
Q 023072 111 --------GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATL 179 (287)
Q Consensus 111 --------~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~ 179 (287)
+..-.+ .-+..|.+-|..+.. .+..+.++|. +|+|.+..+.+- |+ .+.++|.+.|.
T Consensus 207 ~~~~~~~g~~~~~~i~~~~~A~~niv~~~~--~~~~~A~~Le~~fGiPyi~~~~P~---------G~--~~T~~~l~~ia 273 (454)
T cd01973 207 DKSAVTHGNTTIEDIADSANAIATIALARY--EGGKAAEFLQKKFDVPAILGPTPI---------GI--KNTDAFLQNIK 273 (454)
T ss_pred cccccCCCCCCHHHHHHhhhCcEEEEEChh--hhHHHHHHHHHHHCCCeeccCCCc---------Ch--HHHHHHHHHHH
Confidence 122222 344444444443333 3466677774 799988654321 11 24566666666
Q ss_pred HHHhC
Q 023072 180 KALAE 184 (287)
Q Consensus 180 ~ll~~ 184 (287)
+++..
T Consensus 274 ~~~g~ 278 (454)
T cd01973 274 ELTGK 278 (454)
T ss_pred HHHCC
Confidence 66543
No 358
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=22.65 E-value=5.2e+02 Score=22.56 Aligned_cols=103 Identities=14% Similarity=-0.021 Sum_probs=54.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeE---EEEEeCC---c----------C----HHHHHHHHHhcCCceEE-e
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLE---VDLYGNG---E----------D----FNQIQEAAEKLKIVVRV-Y 109 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~---l~i~G~g---~----------~----~~~l~~~~~~~~l~~~v-~ 109 (287)
.++++....--.+.+.+++....+.+....+. +.+.|.. + - .+.+.+..+++|+.+.. +
T Consensus 16 ~l~viaGPCsies~e~~~~~A~~l~~~~~~~~~~i~~~~~~~~~KpRts~~~f~G~g~d~~L~~l~~v~~~~glpv~tEv 95 (270)
T PF00793_consen 16 RLLVIAGPCSIESEEQALEYAERLKELGEKLGDRIPLRMRAYFEKPRTSPYSFQGLGLDPGLDILSEVKEGLGLPVATEV 95 (270)
T ss_dssp SEEEEEEESB-S-HHHHHHHHHHHHHHHHHHTTTEEEEEEECSC-TTSSTTST-CSTHHHHHHHHHHHHHHHT-EEEEEE
T ss_pred ceEEEEECCccCCHHHHHHHHHHHHHhhhhcCcceEEEEEEEecCCccCCCCCCCCCCCccchhHHHHHhhhCCeeeEEe
Confidence 34444444445566777766666654432221 3333322 1 0 23466677778877544 2
Q ss_pred cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 110 PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 110 g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
....+.+.+....|++..+++.=--..-+-+|-.+++||.--+.
T Consensus 96 ~~~~~~~~~~d~vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g 139 (270)
T PF00793_consen 96 LDPEQAEYVADLVDWLQIGARLMENQDLLEAASGTGKPVGFKNG 139 (270)
T ss_dssp SSGGGHHHHHTTESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-
T ss_pred cCcccHHHHHhcCcEEEECcchhcCHHHHHHhccCCCeEEeccC
Confidence 33334444445579999998863333445666778888887664
No 359
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=22.61 E-value=5e+02 Score=23.67 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCeEEeec-CC-----------C---ccccccCCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 136 TTTAEALAMGKIVVCAN-HP-----------S---NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~-~~-----------~---~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
-.+..++..|.+++... .+ | .+++.+....++-=|.++++.+|..++++...
T Consensus 214 ~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~i 280 (347)
T COG1171 214 PSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKI 280 (347)
T ss_pred hHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCe
Confidence 45666777774444433 22 1 22334433333333788999999999887443
No 360
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=22.57 E-value=4e+02 Score=24.64 Aligned_cols=89 Identities=15% Similarity=0.065 Sum_probs=53.6
Q ss_pred ccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchH
Q 023072 59 VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCT 136 (287)
Q Consensus 59 ~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~ 136 (287)
.-.+|++.|.+...++. | +.+.+++......+++... +...+++.+.+...++.. .+|+.|+...--.-=.
T Consensus 29 aa~~n~~~L~~q~~~f~---p--~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~l~~l~~~~~~D~vv~AivG~aGL~ 101 (383)
T PRK12464 29 TANYNIELLEQQIKRFQ---P--RIVSVADKELADTLRTRLS--ANTSKITYGTDGLIAVATHPGSDLVLSSVVGAAGLL 101 (383)
T ss_pred ECCCCHHHHHHHHHHhC---C--CEEEEcCHHHHHHHHHhcc--CCCcEEEECHHHHHHHHcCCCCCEEEEhhhcHhhHH
Confidence 34679999988887773 3 4455665433344444331 223456544433334554 4588888654433334
Q ss_pred HHHHHHhcCCeEEeecCC
Q 023072 137 TTAEALAMGKIVVCANHP 154 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~ 154 (287)
..++|+..|+.+-..|-.
T Consensus 102 pt~~Ai~~gk~iaLANKE 119 (383)
T PRK12464 102 PTIEALKAKKDIALANKE 119 (383)
T ss_pred HHHHHHHCCCcEEEechh
Confidence 578999999988877753
No 361
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=22.52 E-value=3.9e+02 Score=21.03 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=41.1
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCc---CH-----HHHHHHHHhcCCceEEecCCCCHHHHhhhC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE---DF-----NQIQEAAEKLKIVVRVYPGRDHADLIFHDY 122 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~---~~-----~~l~~~~~~~~l~~~v~g~~~~~~~~~~~a 122 (287)
.|.|+|- ....=...++.++.++ +..+.+++... .. +..++.+.+.+..+.+. ++.++.++.+
T Consensus 4 ~i~~vGD-~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~---~~~~e~l~~a 74 (158)
T PF00185_consen 4 KIAYVGD-GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITIT---DDIEEALKGA 74 (158)
T ss_dssp EEEEESS-TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEE---SSHHHHHTT-
T ss_pred EEEEECC-CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEE---eCHHHhcCCC
Confidence 6889993 2222234444444443 46688888644 11 12334455556566665 5556799999
Q ss_pred CEEEcCCCC
Q 023072 123 KVFLNPSTT 131 (287)
Q Consensus 123 dv~v~ps~~ 131 (287)
|++......
T Consensus 75 Dvvy~~~~~ 83 (158)
T PF00185_consen 75 DVVYTDRWQ 83 (158)
T ss_dssp SEEEEESSS
T ss_pred CEEEEcCcc
Confidence 997765544
No 362
>PLN02929 NADH kinase
Probab=22.52 E-value=4.2e+02 Score=23.64 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=40.3
Q ss_pred hhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC----------ccccccCCCeEeec-CHHHHHHHHHHHHhCC
Q 023072 119 FHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----------NDFFKQFPNCRTYD-DRNGFVEATLKALAEE 185 (287)
Q Consensus 119 ~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~----------~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~ 185 (287)
...+|+.|.- =-+|.=+...-.+-.++||+.-+.+- .++=.....|++.. +++++.+.+.++++..
T Consensus 62 ~~~~Dlvi~l-GGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 62 IRDVDLVVAV-GGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred cCCCCEEEEE-CCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCC
Confidence 4456666542 11332222233345678999998862 11112224788887 8999999999999874
No 363
>PRK10206 putative oxidoreductase; Provisional
Probab=22.28 E-value=4.3e+02 Score=23.71 Aligned_cols=69 Identities=17% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
++++++-+-+... +. .+.+++++. + ...++.++++.. -|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 26 ~~~~l~av~d~~~-~~-~~~~~~~~~-~---~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP 96 (344)
T PRK10206 26 DSWHVAHIFRRHA-KP-EEQAPIYSH-I---HFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKP 96 (344)
T ss_pred CCEEEEEEEcCCh-hH-HHHHHhcCC-C---cccCCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecC
Confidence 5677776655432 22 244454441 1 123445577764 47777766655545567789999999999765
No 364
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=21.88 E-value=4.7e+02 Score=22.68 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=39.6
Q ss_pred eEEEEEeCCcCHH---HHHHHHHhcCCceEEecCCCCHH---HHhhhCCEEEcCCCCCcch---HHHHHHHhcCCeEEee
Q 023072 81 LEVDLYGNGEDFN---QIQEAAEKLKIVVRVYPGRDHAD---LIFHDYKVFLNPSTTDVVC---TTTAEALAMGKIVVCA 151 (287)
Q Consensus 81 ~~l~i~G~g~~~~---~l~~~~~~~~l~~~v~g~~~~~~---~~~~~adv~v~ps~~E~~~---~~~~EAma~G~PVV~s 151 (287)
-++.|+|.|.... .+.....+.|.+..++....... ..+..-|++|.-|..-... -.+-.|-..|+++|+-
T Consensus 141 ~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~I 220 (292)
T PRK11337 141 RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICI 220 (292)
T ss_pred CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEE
Confidence 3567889886532 23333344565554443221111 3455669988877763222 2223444789998876
Q ss_pred cC
Q 023072 152 NH 153 (287)
Q Consensus 152 ~~ 153 (287)
-.
T Consensus 221 T~ 222 (292)
T PRK11337 221 TN 222 (292)
T ss_pred eC
Confidence 54
No 365
>PRK06270 homoserine dehydrogenase; Provisional
Probab=21.69 E-value=4.4e+02 Score=23.72 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=26.3
Q ss_pred CHHHHhh--hCCEEEcCCC--C---CcchHHHHHHHhcCCeEEeecC
Q 023072 114 HADLIFH--DYKVFLNPST--T---DVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 114 ~~~~~~~--~adv~v~ps~--~---E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+.++++. ..|++|-.+- . |..--.+.+|+..|++||+.+.
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK 126 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNK 126 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCc
Confidence 3345664 4688887432 2 2223446899999999999864
No 366
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.66 E-value=3.6e+02 Score=24.68 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=23.7
Q ss_pred EEEEEe-CCcCHHHHHHHHHhcCCceEEecCCC--CHHHHhhhCCEEEc
Q 023072 82 EVDLYG-NGEDFNQIQEAAEKLKIVVRVYPGRD--HADLIFHDYKVFLN 127 (287)
Q Consensus 82 ~l~i~G-~g~~~~~l~~~~~~~~l~~~v~g~~~--~~~~~~~~adv~v~ 127 (287)
++.|+| .|---..+.....+.|..+.+++..+ ..++....||++|+
T Consensus 100 ~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVil 148 (374)
T PRK11199 100 PVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIV 148 (374)
T ss_pred eEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEE
Confidence 456666 55544555555555555555554322 12255666666654
No 367
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.59 E-value=3.4e+02 Score=26.07 Aligned_cols=89 Identities=22% Similarity=0.234 Sum_probs=54.3
Q ss_pred ccCHHHHHHHHHH-HHHh-------cCCeEEEEEeCC-------cCHHHHHHHHHhcCCceEE-ecC-CCCHH-HHhhhC
Q 023072 61 SKGYKELLELLDD-HQKE-------LAGLEVDLYGNG-------EDFNQIQEAAEKLKIVVRV-YPG-RDHAD-LIFHDY 122 (287)
Q Consensus 61 ~Kg~~~ll~a~~~-l~~~-------~~~~~l~i~G~g-------~~~~~l~~~~~~~~l~~~v-~g~-~~~~~-~~~~~a 122 (287)
..|.+..++++-. +... ...-.+-|+|.- .|..+++++.+++|+.+.+ ++. ..-.+ .-+..|
T Consensus 131 ~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A 210 (511)
T TIGR01278 131 NQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAA 210 (511)
T ss_pred hHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccC
Confidence 3566666655433 2211 112346677753 2567899999999998876 444 33333 456677
Q ss_pred CEEEcCCCCCcchHHHHHHH--hcCCeEEee
Q 023072 123 KVFLNPSTTDVVCTTTAEAL--AMGKIVVCA 151 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAm--a~G~PVV~s 151 (287)
++-|.++.. ++..+.++| -+|+|.+..
T Consensus 211 ~~NIv~~~~--~g~~~A~~Le~~fGiP~i~~ 239 (511)
T TIGR01278 211 WLNICPYRE--IGLMAAEYLKEKFGQPYITT 239 (511)
T ss_pred cEEEEechH--HHHHHHHHHHHHhCCCcccc
Confidence 777665543 456667777 678888753
No 368
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=21.45 E-value=1.9e+02 Score=23.29 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred EEEEEe--cccccCHHH--HHHHHHHHHHhcCCeEEEEEeCCcC------HHHHHHHHHhcCCceEEecC
Q 023072 52 AYYIGK--MVWSKGYKE--LLELLDDHQKELAGLEVDLYGNGED------FNQIQEAAEKLKIVVRVYPG 111 (287)
Q Consensus 52 i~~vG~--~~~~Kg~~~--ll~a~~~l~~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l~~~v~g~ 111 (287)
|+.+++ +.|+-+..+ --+.+..+....|...+.|+|.|+. ..++.+..++++..+.+...
T Consensus 79 i~~fp~~~lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dt 148 (196)
T KOG3363|consen 79 ILCFPNLLLSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDT 148 (196)
T ss_pred ceecccceeeccCCChhhcCcchHhHhhhcCCCccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEecc
Confidence 555554 344433221 1233444444468889999998875 35678888888888777643
No 369
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=1.8e+02 Score=23.99 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhC
Q 023072 172 NGFVEATLKALAE 184 (287)
Q Consensus 172 ~~l~~~i~~ll~~ 184 (287)
.+++.+|+--+..
T Consensus 208 pELA~AlrLSmeE 220 (243)
T COG5148 208 PELAEALRLSMEE 220 (243)
T ss_pred HHHHHHHHhhHHH
Confidence 4677777655543
No 370
>PRK07574 formate dehydrogenase; Provisional
Probab=21.28 E-value=3.2e+02 Score=25.23 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=44.2
Q ss_pred eEEEEEeCCcCHHHHHHHHHhcCCceEEecCCC---------------CHHHHhhhCCEEEc--CCCCCc---chHHHHH
Q 023072 81 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRD---------------HADLIFHDYKVFLN--PSTTDV---VCTTTAE 140 (287)
Q Consensus 81 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~---------------~~~~~~~~adv~v~--ps~~E~---~~~~~~E 140 (287)
-++-|+|-|.=-..+.+.++.++..+.++.... ..+++++.||++++ |...++ ++-..+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~ 272 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLS 272 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHh
Confidence 468888988765667777777887766653221 12267888888764 433444 4445666
Q ss_pred HHhcCCeEEeec
Q 023072 141 ALAMGKIVVCAN 152 (287)
Q Consensus 141 Ama~G~PVV~s~ 152 (287)
.|--|.-+|-+.
T Consensus 273 ~mk~ga~lIN~a 284 (385)
T PRK07574 273 RMKRGSYLVNTA 284 (385)
T ss_pred cCCCCcEEEECC
Confidence 665555554443
No 371
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=21.27 E-value=3.7e+02 Score=24.33 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=47.4
Q ss_pred eEEecCCCCHH----HHhhhCCEEEcCCCCCc-chHHHHHH-----HhcCCeEEeecC--CC-ccccccCCCeEeecCHH
Q 023072 106 VRVYPGRDHAD----LIFHDYKVFLNPSTTDV-VCTTTAEA-----LAMGKIVVCANH--PS-NDFFKQFPNCRTYDDRN 172 (287)
Q Consensus 106 ~~v~g~~~~~~----~~~~~adv~v~ps~~E~-~~~~~~EA-----ma~G~PVV~s~~--~~-~e~i~~~~~g~l~~d~~ 172 (287)
+.+.|.++-.. .....+|++|.-++-.+ -|++++.. +..|+|+|-|.. |. .++-..+ ..|+.
T Consensus 240 ~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIAGkg-----~A~~~ 314 (332)
T PRK00232 240 INLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLAGKG-----IADVG 314 (332)
T ss_pred CCcCCCCCchhhccccccCCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhhcCC-----CCCHH
Confidence 44578877655 44556799998766655 45555443 467999998766 33 4444332 14899
Q ss_pred HHHHHHHHHHh
Q 023072 173 GFVEATLKALA 183 (287)
Q Consensus 173 ~l~~~i~~ll~ 183 (287)
++.++|..+..
T Consensus 315 S~~~Ai~lA~~ 325 (332)
T PRK00232 315 SFITALNLAIR 325 (332)
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 372
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=21.25 E-value=5e+02 Score=21.81 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=20.8
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
+.+..+|++|+.|..--|+-..++.|+ ..|+|.
T Consensus 93 ~~l~~~dvlIgaT~~G~~~~~~l~~m~-~~~ivf 125 (226)
T cd05311 93 EALKGADVFIGVSRPGVVKKEMIKKMA-KDPIVF 125 (226)
T ss_pred HHHhcCCEEEeCCCCCCCCHHHHHhhC-CCCEEE
Confidence 466778999988763335556667665 334444
No 373
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=21.22 E-value=2.9e+02 Score=23.96 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=22.5
Q ss_pred HHHHHHHHhc--CCeEEEEEeCCcCHHHHHHHHHhcCCc
Q 023072 69 ELLDDHQKEL--AGLEVDLYGNGEDFNQIQEAAEKLKIV 105 (287)
Q Consensus 69 ~a~~~l~~~~--~~~~l~i~G~g~~~~~l~~~~~~~~l~ 105 (287)
++|+.+.++. |++.++++|+|++.+. .++.++..
T Consensus 217 ~cFe~I~~Rfg~p~~~f~~IGDG~eEe~---aAk~l~wP 252 (274)
T TIGR01658 217 QCFKWIKERFGHPKVRFCAIGDGWEECT---AAQAMNWP 252 (274)
T ss_pred HHHHHHHHHhCCCCceEEEeCCChhHHH---HHHhcCCC
Confidence 4566665543 5899999999997443 34455554
No 374
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.18 E-value=2.2e+02 Score=20.90 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=38.5
Q ss_pred EEEEeCCcCHH---HHHHHHHhcC-CceEEecCCCCHH--HHhhhCCEEEcCCCCCc---chHHHHHHHhcCCeEEeecC
Q 023072 83 VDLYGNGEDFN---QIQEAAEKLK-IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDV---VCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 83 l~i~G~g~~~~---~l~~~~~~~~-l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~---~~~~~~EAma~G~PVV~s~~ 153 (287)
+.++|.|.... .+.....+.+ ....++....... ..+..-|++|..|..-. .--.+-.|-..|.+||+--.
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 56778876532 3444445554 4544443111111 23456688888887622 22224466678999987443
No 375
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=21.14 E-value=3.5e+02 Score=20.15 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=12.7
Q ss_pred CCHHHHHHhCCCCCC
Q 023072 269 PDEELCKELGLVTPM 283 (287)
Q Consensus 269 ~~~~~~~~~~~~~~~ 283 (287)
+..+.+|=-|||.|.
T Consensus 92 Pakqa~kiAGLPKP~ 106 (109)
T PRK11508 92 PAKQATKIAGLPKPV 106 (109)
T ss_pred HHHHHHHHcCCCCCC
Confidence 578899999999984
No 376
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=21.10 E-value=6.1e+02 Score=23.68 Aligned_cols=121 Identities=16% Similarity=0.095 Sum_probs=66.0
Q ss_pred cEEEEEe--c---ccccCHHHHHHHHHHHHHh-------------c-CCeEEEEEeC--CcCHHHHHHHHHhcCCceEE-
Q 023072 51 GAYYIGK--M---VWSKGYKELLELLDDHQKE-------------L-AGLEVDLYGN--GEDFNQIQEAAEKLKIVVRV- 108 (287)
Q Consensus 51 ~i~~vG~--~---~~~Kg~~~ll~a~~~l~~~-------------~-~~~~l~i~G~--g~~~~~l~~~~~~~~l~~~v- 108 (287)
.|+.+.. + ....|++.+++++-+...+ . ..-.+.|.|. ..|..+++++.+++|+++.+
T Consensus 117 pVi~v~tpgF~~~s~~~G~d~a~~ai~~~l~~~~~~g~~~~~~~~~~~~~~vnl~G~~~~gd~~eik~lL~~~Gi~~~~~ 196 (422)
T TIGR02015 117 RVLGIDVPGFGVPTHAEAKDVLVSAMLKYARREVSAGPVGEPKSGRDSKPTLVLLGEIFPVDAMVIGGVLQPIGVESGPT 196 (422)
T ss_pred CeEEEeCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCceeeecCCCcccHHHHHHHHHHcCCCeEEe
Confidence 4666553 3 2467888888887653310 0 1224555673 33578899999999998866
Q ss_pred ecCCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCC
Q 023072 109 YPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 109 ~g~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
+++.+-.+ .-+..|.+-+.-+.+-+ .+.....-.|+|.+.. .+ -|+ .+.++|.+.|.+++..+
T Consensus 197 ~~G~~~~ei~~a~~A~~~i~l~~~~~--~a~~l~~~~GvP~~~~-~P---------iG~--~~Td~fL~~la~~~G~~ 260 (422)
T TIGR02015 197 VPGRDWRELYAALDSSAVAVLHPFYE--ATARLFEAAGVKIVGS-AP---------VGA--NGTGEWLERIGEALDLD 260 (422)
T ss_pred cCCCCHHHHHhhhcCeEEEEeCccch--HHHHHHHHcCCceecc-CC---------CCh--HHHHHHHHHHHHHhCcC
Confidence 45554334 44444444333232222 3333334789997532 11 111 24566666666666543
No 377
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=21.02 E-value=4.6e+02 Score=21.35 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=33.3
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEe-ecCHHHHHHHHHHHHhC
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDDRNGFVEATLKALAE 184 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l-~~d~~~l~~~i~~ll~~ 184 (287)
..|.+|.......-.. +-++...|+|||..+....+ . ....+ .++.+....+...+.+.
T Consensus 55 ~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~---~-~~~~v~~d~~~~g~~~~~~l~~~ 114 (264)
T cd06267 55 RVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDG---L-GVDSVGIDNRAGAYLAVEHLIEL 114 (264)
T ss_pred CcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccC---C-CCCEEeeccHHHHHHHHHHHHHC
Confidence 4576666544433222 77788899999999875432 1 12222 33555555555555544
No 378
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=21.01 E-value=4.9e+02 Score=21.66 Aligned_cols=82 Identities=17% Similarity=0.085 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh
Q 023072 65 KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA 143 (287)
Q Consensus 65 ~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma 143 (287)
+..+++++++.+++|++ ++=+|+--+.+..++. .+.|-+..+.+..+..- +.-+..++.++|-- ..+.-+..|+.
T Consensus 44 ~~a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a-~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~ 119 (204)
T TIGR01182 44 PVALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQA-VDAGAQFIVSPGLTPELAKHAQDHGIPIIPGV--ATPSEIMLALE 119 (204)
T ss_pred ccHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHH-HHcCCCEEECCCCCHHHHHHHHHcCCcEECCC--CCHHHHHHHHH
Confidence 34455555566666752 2333555566666654 34665644455554333 66667788777721 24566888888
Q ss_pred cCCeEEe
Q 023072 144 MGKIVVC 150 (287)
Q Consensus 144 ~G~PVV~ 150 (287)
+|.-+|=
T Consensus 120 ~Ga~~vK 126 (204)
T TIGR01182 120 LGITALK 126 (204)
T ss_pred CCCCEEE
Confidence 8987763
No 379
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=20.94 E-value=2.2e+02 Score=25.74 Aligned_cols=102 Identities=15% Similarity=0.199 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCceEEecCCC--------CHHHHhhhCCEEEcC--CCCCc-chHHHHHHHhcCCeEEeec--CCC-ccc
Q 023072 93 NQIQEAAEKLKIVVRVYPGRD--------HADLIFHDYKVFLNP--STTDV-VCTTTAEALAMGKIVVCAN--HPS-NDF 158 (287)
Q Consensus 93 ~~l~~~~~~~~l~~~v~g~~~--------~~~~~~~~adv~v~p--s~~E~-~~~~~~EAma~G~PVV~s~--~~~-~e~ 158 (287)
..+-+...++ +.+..+|... ...++++.+..++.. |..+. .-=++.+|+..|+-.|.-. .+. .++
T Consensus 192 ~~~~~~L~~~-~~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~ 270 (349)
T PF00852_consen 192 EEYVRELSKY-IPVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEF 270 (349)
T ss_dssp HHHHHHHHTT-S-EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHH
T ss_pred HHHHHHHHhh-cCeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccC
Confidence 3333344444 5677777751 111788888887753 23333 3447889999999555544 233 444
Q ss_pred cccCCCeEe----ecCHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHH
Q 023072 159 FKQFPNCRT----YDDRNGFVEATLKALAEEPALPTEAQRHQLSWESA 202 (287)
Q Consensus 159 i~~~~~g~l----~~d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~ 202 (287)
+-. +.++ ++++++|++-|..+.+|+. ...+.|.|...
T Consensus 271 ~P~--~SfI~~~df~s~~~La~yl~~l~~n~~-----~Y~~yf~Wr~~ 311 (349)
T PF00852_consen 271 APP--NSFIHVDDFKSPKELADYLKYLDKNDE-----LYNKYFEWRKR 311 (349)
T ss_dssp S-G--GGSEEGGGSSSHHHHHHHHHHHHT-HH-----HHH--------
T ss_pred CCC--CCccchhcCCCHHHHHHHHHHHhcCHH-----HHhhhcccccc
Confidence 433 4444 2499999999999988743 33345666544
No 380
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=20.90 E-value=1.4e+02 Score=24.17 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=25.9
Q ss_pred HHhhhCCEEEc---CCCCCcchHHH---HHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLN---PSTTDVVCTTT---AEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~---ps~~E~~~~~~---~EAma~G~PVV~s~~ 153 (287)
..+.+||+.|. |-+.++=+-|. --|.|.|+||++...
T Consensus 64 ~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 64 KLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 67888998763 44444434444 457899999999875
No 381
>PRK06091 membrane protein FdrA; Validated
Probab=20.71 E-value=2.6e+02 Score=27.28 Aligned_cols=64 Identities=16% Similarity=-0.018 Sum_probs=42.9
Q ss_pred CEEEcCCC--CCcchHHHHHHH-hcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 123 KVFLNPST--TDVVCTTTAEAL-AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 123 dv~v~ps~--~E~~~~~~~EAm-a~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
++.++-+. .|++.-.+++++ .+|||||+...|..+.-....+.+.+++.+++++....+.....
T Consensus 254 kvIvly~kppaE~v~~~fl~aar~~~KPVVvlk~Grs~~g~~q~GVi~a~tleEl~~~A~~la~~~~ 320 (555)
T PRK06091 254 EVIAFVSKPPAEAVRLKIINAMKATGKPVVALFLGYTPAVARDENVWFASTLDEAARLACLLSRVTA 320 (555)
T ss_pred cEEEEEEecCchHHHHHHHHHHhhCCCCEEEEEecCCchhhhcCCeEEeCCHHHHHHHHHHHhcccc
Confidence 55555332 288888888875 56999999998874433333333556799999887776654433
No 382
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=20.66 E-value=3.4e+02 Score=22.95 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHh
Q 023072 170 DRNGFVEATLKALA 183 (287)
Q Consensus 170 d~~~l~~~i~~ll~ 183 (287)
..+-|.+++.+...
T Consensus 106 ~~eRl~~aL~~y~~ 119 (224)
T COG4565 106 TFERLQQALTRYRQ 119 (224)
T ss_pred eHHHHHHHHHHHHH
Confidence 66777777776654
No 383
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.63 E-value=4.8e+02 Score=23.02 Aligned_cols=69 Identities=13% Similarity=0.041 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
.+-+.+|+|.+.- -.-+..+..+.+..+.+. -...+..+..+.||++|...-.-.+ ..-|.+--|.-||
T Consensus 158 ~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~avG~p~~--v~~~~vk~gavVI 228 (285)
T PRK10792 158 YGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAVGKPGF--IPGEWIKPGAIVI 228 (285)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcCCCccc--ccHHHcCCCcEEE
Confidence 3578899998764 344555556667777774 4445555889999999986533221 2225555565554
No 384
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=20.59 E-value=6e+02 Score=22.47 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=7.1
Q ss_pred HHHHHHHhcCCc
Q 023072 94 QIQEAAEKLKIV 105 (287)
Q Consensus 94 ~l~~~~~~~~l~ 105 (287)
.+++.+.+.++.
T Consensus 47 ~v~~~a~~~~Ip 58 (309)
T PRK00005 47 PVKQLALEHGIP 58 (309)
T ss_pred HHHHHHHHcCCC
Confidence 456666666655
No 385
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.51 E-value=2.1e+02 Score=25.68 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.5
Q ss_pred HhhhCCEEEcCCC-CCcchHHHHHHHhcCCeEEeecCC
Q 023072 118 IFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 118 ~~~~adv~v~ps~-~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+-+..|++|.-+. .+.++-.+-+|...|.|||+.|.-
T Consensus 78 i~qg~~vlvi~a~d~~~l~~~i~~A~~~gikViaYDRl 115 (341)
T COG4213 78 INQGVKVLVIGAIDGGVLSNAVEKAKSEGIKVIAYDRL 115 (341)
T ss_pred HhcCCCEEEEEeccchhHHHHHHHHHHcCCeEEEeecc
Confidence 3445788776554 588999999999999999999853
No 386
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.49 E-value=3.8e+02 Score=23.67 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=34.3
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCC
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps 129 (287)
..-+++|+|.+.- -.-+..+..+.+..+.+... ..+..++.+.||++|...
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGV 208 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEec
Confidence 4678999998754 33455555566777777533 333347899999999865
No 387
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=20.46 E-value=6.4e+02 Score=22.74 Aligned_cols=69 Identities=12% Similarity=-0.005 Sum_probs=39.3
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
.|+++|+-+-+..+.+.+. .. ..++.. .+.+.+....|+.++.+-...-.=.+.++++.|+.||++..+
T Consensus 25 ~pd~ELVgV~dr~~~~~~~---~~----~~v~~~-~d~~e~l~~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~ 93 (324)
T TIGR01921 25 QPDMELVGVFSRRGAETLD---TE----TPVYAV-ADDEKHLDDVDVLILCMGSATDIPEQAPYFAQFANTVDSFDN 93 (324)
T ss_pred CCCcEEEEEEcCCcHHHHh---hc----CCcccc-CCHHHhccCCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCc
Confidence 4778777654544322222 11 122222 233356677899877443333244566789999999999654
No 388
>TIGR03342 dsrC_tusE_dsvC sulfur relay protein, TusE/DsrC/DsvC family. Members of this protein family may be described as TusE, a partner to TusBCD in a sulfur relay system for 2-thiouridine biosynthesis, a tRNA base modification process. Other members are DsrC, a functionally similar protein in species where the sulfur relay system exists primarily for sulfur metabolism rather than tRNA base modification. Some members of this family are known explicitly as the gamma subunit of sulfite reductases.
Probab=20.44 E-value=3.7e+02 Score=19.97 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=12.6
Q ss_pred CCHHHHHHhCCCCCC
Q 023072 269 PDEELCKELGLVTPM 283 (287)
Q Consensus 269 ~~~~~~~~~~~~~~~ 283 (287)
+..+.++==|||.|.
T Consensus 91 Pakqa~kiAGLPkP~ 105 (108)
T TIGR03342 91 PAKQACKIAGLPKPT 105 (108)
T ss_pred HHHHHHHHcCCCCCC
Confidence 478899999999984
No 389
>CHL00067 rps2 ribosomal protein S2
Probab=20.40 E-value=5.3e+02 Score=21.84 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=20.9
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
|++|.....+. ..++.||.-+|.|||+--.
T Consensus 163 ~~iiv~d~~~~-~~ai~Ea~~l~IPvIaivD 192 (230)
T CHL00067 163 DIVIIIDQQEE-YTALRECRKLGIPTISILD 192 (230)
T ss_pred CEEEEeCCccc-HHHHHHHHHcCCCEEEEEe
Confidence 55544333322 3899999999999998654
No 390
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=20.13 E-value=3.3e+02 Score=20.05 Aligned_cols=37 Identities=24% Similarity=0.157 Sum_probs=23.2
Q ss_pred HHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 71 LDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
+..+....| .++|+|.|.. ..++.+...+.++.+.+.
T Consensus 45 l~~l~~~~p--eiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m 85 (109)
T cd05560 45 FEALLALQP--EVILLGTGERQRFPPPALLAPLLARGIGVEVM 85 (109)
T ss_pred HHHHHhcCC--CEEEEecCCCCCcCCHHHHHHHHHcCCeEEEE
Confidence 333433334 5899999876 355666667777766665
No 391
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.03 E-value=2.8e+02 Score=20.40 Aligned_cols=40 Identities=25% Similarity=0.192 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 69 ELLDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 69 ~a~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
+.+..+.... ...++|+|.|.. ..++.+...+.++.+.+.
T Consensus 42 ~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m 85 (109)
T cd00248 42 EALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVM 85 (109)
T ss_pred HHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEe
Confidence 3444444443 256899999875 355666677778777665
Done!