Query 023072
Match_columns 287
No_of_seqs 255 out of 2170
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fro_A GLGA glycogen synthase; 100.0 1.8E-30 6.1E-35 238.5 22.0 210 2-214 189-431 (439)
2 2jjm_A Glycosyl transferase, g 100.0 5E-30 1.7E-34 233.5 22.0 212 2-214 157-386 (394)
3 3okp_A GDP-mannose-dependent a 100.0 3.6E-30 1.2E-34 233.4 20.9 212 2-214 141-380 (394)
4 3c48_A Predicted glycosyltrans 100.0 3.8E-30 1.3E-34 237.1 20.4 214 2-215 185-427 (438)
5 3vue_A GBSS-I, granule-bound s 100.0 1.4E-30 4.9E-35 246.9 15.7 210 2-213 242-511 (536)
6 3oy2_A Glycosyltransferase B73 100.0 1.9E-30 6.6E-35 237.5 15.2 205 4-214 136-391 (413)
7 2x6q_A Trehalose-synthase TRET 100.0 1.4E-29 4.7E-34 232.2 20.7 211 2-212 176-413 (416)
8 1rzu_A Glycogen synthase 1; gl 100.0 6.9E-30 2.3E-34 238.8 18.2 211 2-214 207-476 (485)
9 2qzs_A Glycogen synthase; glyc 100.0 1.3E-29 4.5E-34 236.9 19.9 211 2-214 205-477 (485)
10 3s28_A Sucrose synthase 1; gly 100.0 1.5E-29 5E-34 248.5 19.1 212 2-213 475-769 (816)
11 2gek_A Phosphatidylinositol ma 100.0 1.2E-29 4E-34 231.1 14.3 207 1-214 160-384 (406)
12 2iuy_A Avigt4, glycosyltransfe 100.0 1.5E-29 5.1E-34 226.2 14.2 198 2-214 120-336 (342)
13 2r60_A Glycosyl transferase, g 100.0 1.8E-29 6.1E-34 237.1 15.1 213 2-214 191-460 (499)
14 2iw1_A Lipopolysaccharide core 100.0 8.1E-29 2.8E-33 223.2 15.7 210 2-212 137-370 (374)
15 3qhp_A Type 1 capsular polysac 99.9 1.1E-27 3.6E-32 192.5 11.3 153 51-205 4-166 (166)
16 2bfw_A GLGA glycogen synthase; 99.9 4.4E-27 1.5E-31 194.4 14.5 162 24-187 4-184 (200)
17 2x0d_A WSAF; GT4 family, trans 99.9 3.5E-27 1.2E-31 217.1 11.7 186 4-205 197-402 (413)
18 2hy7_A Glucuronosyltransferase 99.9 1E-26 3.6E-31 213.4 11.9 184 2-215 179-381 (406)
19 2vsy_A XCC0866; transferase, g 99.9 5.2E-25 1.8E-29 209.7 15.7 202 2-214 329-560 (568)
20 2f9f_A First mannosyl transfer 99.9 2.2E-24 7.5E-29 175.6 12.4 134 50-187 24-165 (177)
21 1uqt_A Alpha, alpha-trehalose- 99.9 5E-24 1.7E-28 199.2 13.6 193 18-213 219-454 (482)
22 3beo_A UDP-N-acetylglucosamine 99.9 1.4E-22 4.8E-27 182.6 11.9 200 2-211 151-374 (375)
23 1f0k_A MURG, UDP-N-acetylgluco 99.9 1.3E-21 4.3E-26 175.8 13.6 195 2-213 142-357 (364)
24 3t5t_A Putative glycosyltransf 99.9 1.5E-21 5.1E-26 181.5 14.2 189 19-213 250-473 (496)
25 3nb0_A Glycogen [starch] synth 99.9 5E-21 1.7E-25 181.8 16.2 98 117-214 514-634 (725)
26 1vgv_A UDP-N-acetylglucosamine 99.8 7.3E-22 2.5E-26 178.6 7.5 206 2-214 142-377 (384)
27 2xci_A KDO-transferase, 3-deox 99.8 4.7E-20 1.6E-24 167.3 15.5 180 2-194 154-357 (374)
28 1v4v_A UDP-N-acetylglucosamine 99.8 5.6E-19 1.9E-23 159.4 6.6 198 2-211 147-362 (376)
29 3rhz_A GTF3, nucleotide sugar 99.6 1.7E-16 5.9E-21 141.8 7.5 177 1-205 133-328 (339)
30 3dzc_A UDP-N-acetylglucosamine 99.4 5E-14 1.7E-18 128.6 5.8 201 1-209 166-393 (396)
31 3ot5_A UDP-N-acetylglucosamine 99.4 1.6E-13 5.4E-18 125.6 6.1 201 2-211 170-393 (403)
32 3s2u_A UDP-N-acetylglucosamine 99.4 4.6E-12 1.6E-16 114.3 12.9 168 17-194 152-336 (365)
33 3otg_A CALG1; calicheamicin, T 99.3 1.9E-12 6.4E-17 117.8 7.9 149 51-211 245-408 (412)
34 2iyf_A OLED, oleandomycin glyc 99.3 1.2E-11 4.2E-16 113.3 9.6 151 51-212 235-400 (430)
35 3tsa_A SPNG, NDP-rhamnosyltran 99.2 2.8E-11 9.5E-16 109.4 6.4 149 52-210 222-387 (391)
36 3q3e_A HMW1C-like glycosyltran 99.1 4.8E-10 1.7E-14 106.2 13.5 135 51-187 441-591 (631)
37 4fzr_A SSFS6; structural genom 99.1 4.3E-11 1.5E-15 108.6 5.8 143 51-207 230-396 (398)
38 4hwg_A UDP-N-acetylglucosamine 99.0 2.7E-09 9.1E-14 96.9 14.1 174 2-187 147-345 (385)
39 2o6l_A UDP-glucuronosyltransfe 99.0 9.4E-10 3.2E-14 87.9 8.5 118 51-185 24-155 (170)
40 2p6p_A Glycosyl transferase; X 98.9 3.5E-09 1.2E-13 95.4 10.2 120 51-185 213-348 (384)
41 3oti_A CALG3; calicheamicin, T 98.9 8E-10 2.7E-14 100.2 5.9 145 51-210 235-396 (398)
42 2yjn_A ERYCIII, glycosyltransf 98.9 2.5E-09 8.6E-14 98.4 6.8 147 51-211 270-435 (441)
43 3ia7_A CALG4; glycosysltransfe 98.7 3.8E-08 1.3E-12 88.7 8.9 147 51-211 234-398 (402)
44 3rsc_A CALG2; TDP, enediyne, s 98.6 1.1E-07 3.7E-12 86.4 9.3 146 52-211 251-413 (415)
45 2iya_A OLEI, oleandomycin glyc 98.5 3.5E-07 1.2E-11 83.4 10.4 123 52-186 259-391 (424)
46 4gyw_A UDP-N-acetylglucosamine 98.4 6.1E-06 2.1E-10 80.6 14.6 136 51-187 523-671 (723)
47 2gj4_A Glycogen phosphorylase, 98.3 2.6E-06 9E-11 82.8 11.2 124 51-174 552-707 (824)
48 1l5w_A Maltodextrin phosphoryl 98.3 1.7E-06 5.9E-11 83.8 9.5 161 51-213 528-730 (796)
49 1iir_A Glycosyltransferase GTF 98.3 7E-07 2.4E-11 81.3 6.4 118 51-185 241-369 (415)
50 2c4m_A Glycogen phosphorylase; 98.3 4.2E-06 1.4E-10 81.1 11.4 160 51-213 518-719 (796)
51 1rrv_A Glycosyltransferase GTF 98.1 1.6E-06 5.4E-11 78.9 3.7 118 51-185 240-370 (416)
52 4amg_A Snogd; transferase, pol 98.0 2E-06 6.9E-11 77.4 3.4 122 54-186 243-370 (400)
53 3h4t_A Glycosyltransferase GTF 98.0 1E-05 3.6E-10 73.3 7.0 145 51-211 224-382 (404)
54 3hbm_A UDP-sugar hydrolase; PS 97.7 9.5E-05 3.2E-09 63.9 7.8 92 51-153 160-252 (282)
55 2c1x_A UDP-glucose flavonoid 3 96.5 0.018 6.2E-07 52.9 11.0 78 103-185 324-413 (456)
56 1psw_A ADP-heptose LPS heptosy 96.5 0.0061 2.1E-07 53.5 7.6 95 52-153 184-288 (348)
57 3hbf_A Flavonoid 3-O-glucosylt 96.5 0.03 1E-06 51.5 12.2 81 101-184 324-414 (454)
58 2jzc_A UDP-N-acetylglucosamine 96.3 0.0047 1.6E-07 51.2 5.5 47 104-154 114-161 (224)
59 2acv_A Triterpene UDP-glucosyl 95.8 0.2 6.8E-06 45.9 14.5 74 105-183 333-424 (463)
60 2pq6_A UDP-glucuronosyl/UDP-gl 95.7 0.12 4.1E-06 47.6 12.3 80 101-185 350-440 (482)
61 3tov_A Glycosyl transferase fa 95.4 0.06 2.1E-06 47.5 8.9 97 52-155 189-290 (349)
62 1ygp_A Yeast glycogen phosphor 94.3 0.84 2.9E-05 44.7 14.0 125 52-176 603-768 (879)
63 2gt1_A Lipopolysaccharide hept 93.7 0.098 3.4E-06 45.3 6.0 125 52-184 182-322 (326)
64 2vch_A Hydroquinone glucosyltr 92.4 1.7 5.7E-05 39.9 12.5 73 109-184 344-429 (480)
65 3ehd_A Uncharacterized conserv 84.3 2.4 8.2E-05 32.9 6.2 66 117-182 65-161 (162)
66 3gt7_A Sensor protein; structu 80.0 16 0.00053 26.9 10.6 108 80-187 7-130 (154)
67 3l7i_A Teichoic acid biosynthe 79.0 13 0.00043 35.9 10.7 69 110-183 604-682 (729)
68 1vi6_A 30S ribosomal protein S 78.4 4.5 0.00015 32.7 6.1 90 62-153 51-146 (208)
69 4fb5_A Probable oxidoreductase 77.4 5.3 0.00018 34.9 7.0 98 51-153 27-126 (393)
70 3uuw_A Putative oxidoreductase 74.7 11 0.00038 31.9 8.1 91 51-153 8-98 (308)
71 3j20_B 30S ribosomal protein S 73.6 10 0.00035 30.5 7.0 90 60-151 45-140 (202)
72 3mz0_A Inositol 2-dehydrogenas 72.7 23 0.00079 30.4 9.8 73 77-153 24-98 (344)
73 3e9m_A Oxidoreductase, GFO/IDH 72.3 40 0.0014 28.7 11.2 91 51-153 7-99 (330)
74 4hkt_A Inositol 2-dehydrogenas 71.9 19 0.00064 30.8 9.0 69 78-153 25-95 (331)
75 4h3v_A Oxidoreductase domain p 71.8 7.3 0.00025 33.9 6.4 96 51-154 8-108 (390)
76 2zay_A Response regulator rece 71.5 25 0.00087 25.2 9.9 107 80-186 8-130 (147)
77 4had_A Probable oxidoreductase 70.1 15 0.00052 31.6 8.0 73 77-154 45-119 (350)
78 2f62_A Nucleoside 2-deoxyribos 69.8 15 0.00052 28.3 7.0 37 117-153 63-106 (161)
79 1e2b_A Enzyme IIB-cellobiose; 69.8 5.6 0.00019 28.3 4.2 60 83-143 7-71 (106)
80 3hzh_A Chemotaxis response reg 69.7 30 0.001 25.3 9.0 103 81-183 37-156 (157)
81 4f3y_A DHPR, dihydrodipicolina 69.2 8.3 0.00028 32.5 5.8 43 113-155 65-107 (272)
82 3db2_A Putative NADPH-dependen 68.9 28 0.00095 30.0 9.5 71 77-153 26-98 (354)
83 3jte_A Response regulator rece 68.7 29 0.00099 24.7 10.4 104 81-184 4-123 (143)
84 3bch_A 40S ribosomal protein S 68.6 9 0.00031 31.9 5.7 91 62-153 86-182 (253)
85 3euw_A MYO-inositol dehydrogen 68.2 28 0.00097 29.8 9.3 90 51-153 6-97 (344)
86 3ec7_A Putative dehydrogenase; 66.5 40 0.0014 29.1 10.0 93 51-153 25-119 (357)
87 3grc_A Sensor protein, kinase; 66.5 32 0.0011 24.4 11.2 106 80-185 6-128 (140)
88 1rcu_A Conserved hypothetical 66.3 9.4 0.00032 30.5 5.3 63 117-181 114-192 (195)
89 3cg4_A Response regulator rece 65.8 33 0.0011 24.3 9.7 105 80-184 7-127 (142)
90 3u5c_A 40S ribosomal protein S 64.0 12 0.00042 31.1 5.6 90 61-151 51-146 (252)
91 3lua_A Response regulator rece 63.9 34 0.0012 24.3 7.9 107 80-186 4-129 (140)
92 3h5i_A Response regulator/sens 63.3 38 0.0013 24.1 10.3 105 80-184 5-124 (140)
93 3iz6_A 40S ribosomal protein S 63.2 12 0.0004 32.0 5.5 90 62-152 57-152 (305)
94 4dad_A Putative pilus assembly 63.1 39 0.0013 24.2 8.6 104 80-185 20-142 (146)
95 3ezy_A Dehydrogenase; structur 63.0 28 0.00094 29.9 8.2 71 78-153 24-96 (344)
96 2qr3_A Two-component system re 62.7 38 0.0013 23.9 8.4 105 81-185 4-127 (140)
97 3u80_A 3-dehydroquinate dehydr 62.6 48 0.0016 25.1 9.9 60 123-182 73-146 (151)
98 2xzm_B RPS0E; ribosome, transl 62.5 12 0.0004 31.0 5.3 91 62-153 48-145 (241)
99 3n8k_A 3-dehydroquinate dehydr 61.8 53 0.0018 25.4 9.2 89 95-183 62-168 (172)
100 2zkq_b 40S ribosomal protein S 61.5 13 0.00044 31.7 5.5 91 62-153 53-149 (295)
101 2ho3_A Oxidoreductase, GFO/IDH 61.1 23 0.0008 30.1 7.3 71 78-153 23-94 (325)
102 3moi_A Probable dehydrogenase; 60.9 24 0.00083 30.9 7.5 70 78-153 25-96 (387)
103 4fyk_A Deoxyribonucleoside 5'- 60.4 14 0.00048 28.2 5.0 67 117-184 64-142 (152)
104 3hdv_A Response regulator; PSI 60.2 42 0.0014 23.6 10.7 106 80-185 7-128 (136)
105 2iz6_A Molybdenum cofactor car 59.8 9.9 0.00034 29.8 4.2 66 117-184 103-174 (176)
106 1k68_A Phytochrome response re 59.6 42 0.0014 23.5 10.1 104 81-184 3-131 (140)
107 3kip_A 3-dehydroquinase, type 59.5 46 0.0016 25.6 7.7 61 124-184 87-158 (167)
108 1p9l_A Dihydrodipicolinate red 59.4 49 0.0017 27.2 8.7 73 82-154 2-78 (245)
109 2gkg_A Response regulator homo 59.4 40 0.0014 23.1 9.1 105 81-185 6-126 (127)
110 1ydw_A AX110P-like protein; st 59.4 41 0.0014 29.0 8.7 91 51-152 8-102 (362)
111 3evn_A Oxidoreductase, GFO/IDH 58.8 25 0.00085 30.0 7.1 91 51-153 7-99 (329)
112 3k9c_A Transcriptional regulat 58.5 57 0.0019 26.7 9.2 48 137-187 80-127 (289)
113 3cnb_A DNA-binding response re 57.9 46 0.0016 23.4 10.7 107 80-186 8-132 (143)
114 3heb_A Response regulator rece 57.4 51 0.0017 23.7 9.7 103 81-183 5-134 (152)
115 3u3x_A Oxidoreductase; structu 57.3 56 0.0019 28.3 9.2 91 51-153 28-120 (361)
116 3gl9_A Response regulator; bet 57.2 45 0.0015 23.1 10.1 102 82-183 4-121 (122)
117 2pln_A HP1043, response regula 56.2 50 0.0017 23.2 9.5 102 80-184 18-133 (137)
118 1tlt_A Putative oxidoreductase 55.9 48 0.0016 27.9 8.4 69 78-152 28-96 (319)
119 3q2i_A Dehydrogenase; rossmann 55.2 44 0.0015 28.7 8.1 91 51-153 15-107 (354)
120 3rc1_A Sugar 3-ketoreductase; 54.2 44 0.0015 28.8 8.0 91 51-153 29-121 (350)
121 2l2q_A PTS system, cellobiose- 54.1 54 0.0018 23.0 8.3 93 81-184 5-105 (109)
122 2qxy_A Response regulator; reg 53.9 55 0.0019 23.1 9.0 107 80-186 4-123 (142)
123 3ohs_X Trans-1,2-dihydrobenzen 53.5 52 0.0018 28.0 8.3 69 80-153 28-98 (334)
124 3hdg_A Uncharacterized protein 53.4 55 0.0019 22.9 8.9 105 80-184 7-125 (137)
125 2glx_A 1,5-anhydro-D-fructose 53.2 70 0.0024 27.0 9.1 69 79-152 23-93 (332)
126 3ijp_A DHPR, dihydrodipicolina 52.7 17 0.00059 30.8 4.9 43 113-155 80-122 (288)
127 1h6d_A Precursor form of gluco 51.9 29 0.00099 31.1 6.6 94 51-152 85-181 (433)
128 1zh8_A Oxidoreductase; TM0312, 51.6 42 0.0014 28.7 7.4 92 51-153 20-114 (340)
129 2qsj_A DNA-binding response re 51.5 65 0.0022 23.2 8.9 107 80-186 3-126 (154)
130 3cea_A MYO-inositol 2-dehydrog 50.1 97 0.0033 26.2 9.5 91 51-152 10-102 (346)
131 3ilh_A Two component response 49.9 65 0.0022 22.7 10.1 106 80-185 9-140 (146)
132 2khz_A C-MYC-responsive protei 49.4 24 0.00082 27.1 4.9 67 117-184 73-151 (165)
133 2j48_A Two-component sensor ki 48.8 52 0.0018 21.9 6.4 102 82-183 3-117 (119)
134 1k66_A Phytochrome response re 48.7 68 0.0023 22.6 9.4 105 80-184 6-138 (149)
135 2czc_A Glyceraldehyde-3-phosph 47.8 1.1E+02 0.0037 26.2 9.4 79 66-152 16-110 (334)
136 1qkk_A DCTD, C4-dicarboxylate 47.7 75 0.0026 22.8 9.0 104 81-184 4-121 (155)
137 3v5n_A Oxidoreductase; structu 47.7 1.2E+02 0.0042 26.6 10.0 72 78-153 62-142 (417)
138 3t6k_A Response regulator rece 47.7 71 0.0024 22.5 10.2 105 81-185 5-125 (136)
139 3hv2_A Response regulator/HD d 47.5 76 0.0026 22.8 10.0 104 81-184 15-133 (153)
140 3nbm_A PTS system, lactose-spe 46.5 49 0.0017 23.4 5.8 72 80-152 6-85 (108)
141 3ip3_A Oxidoreductase, putativ 46.4 58 0.002 27.7 7.5 73 78-153 22-99 (337)
142 4gqa_A NAD binding oxidoreduct 46.2 54 0.0018 28.8 7.4 96 51-154 28-129 (412)
143 3kto_A Response regulator rece 46.1 59 0.002 22.9 6.5 102 81-185 7-127 (136)
144 2p2s_A Putative oxidoreductase 45.9 93 0.0032 26.3 8.7 90 51-152 6-97 (336)
145 4e7p_A Response regulator; DNA 45.9 80 0.0027 22.6 11.2 105 80-185 20-141 (150)
146 3e18_A Oxidoreductase; dehydro 45.5 1.3E+02 0.0044 25.8 9.7 69 78-153 27-97 (359)
147 3m6m_D Sensory/regulatory prot 45.3 81 0.0028 22.5 9.2 105 80-184 14-136 (143)
148 2rjn_A Response regulator rece 45.1 83 0.0028 22.6 10.0 105 80-184 7-126 (154)
149 3dty_A Oxidoreductase, GFO/IDH 44.6 1.3E+02 0.0044 26.2 9.6 71 79-153 38-117 (398)
150 3lwz_A 3-dehydroquinate dehydr 44.3 1E+02 0.0035 23.4 8.5 60 123-182 76-146 (153)
151 3pdi_A Nitrogenase MOFE cofact 44.0 1.4E+02 0.0049 27.0 9.9 119 52-184 156-301 (483)
152 1h05_A 3-dehydroquinate dehydr 43.8 1E+02 0.0035 23.2 9.0 90 94-183 35-142 (146)
153 3f6c_A Positive transcription 43.7 79 0.0027 21.9 10.9 106 81-186 2-122 (134)
154 3cg0_A Response regulator rece 43.6 81 0.0028 22.0 10.3 106 79-184 8-128 (140)
155 2ixa_A Alpha-N-acetylgalactosa 43.2 1.4E+02 0.005 26.4 9.8 95 51-153 22-123 (444)
156 3nhm_A Response regulator; pro 42.9 81 0.0028 21.8 10.4 104 81-185 5-123 (133)
157 3lte_A Response regulator; str 42.4 82 0.0028 21.7 10.0 105 80-184 6-125 (132)
158 2cok_A Poly [ADP-ribose] polym 42.4 32 0.0011 24.7 4.2 66 79-152 12-78 (113)
159 3snk_A Response regulator CHEY 42.3 68 0.0023 22.4 6.3 105 80-184 14-133 (135)
160 1s2d_A Purine trans deoxyribos 41.8 19 0.00067 27.8 3.2 36 117-152 77-116 (167)
161 3kb6_A D-lactate dehydrogenase 41.0 84 0.0029 27.0 7.5 75 81-155 142-233 (334)
162 1dbw_A Transcriptional regulat 40.6 86 0.0029 21.5 11.4 105 80-184 3-121 (126)
163 3dfz_A SIRC, precorrin-2 dehyd 40.0 1.5E+02 0.005 23.9 8.7 120 51-183 33-162 (223)
164 3n53_A Response regulator rece 39.8 95 0.0033 21.7 8.6 63 122-184 47-122 (140)
165 1xea_A Oxidoreductase, GFO/IDH 39.0 92 0.0032 26.2 7.5 70 78-152 25-94 (323)
166 3l49_A ABC sugar (ribose) tran 38.8 1.5E+02 0.0052 23.8 8.8 59 121-183 61-120 (291)
167 2qip_A Protein of unknown func 38.7 80 0.0027 23.9 6.4 65 61-128 91-159 (165)
168 3m2t_A Probable dehydrogenase; 38.1 45 0.0015 28.8 5.4 92 51-153 7-100 (359)
169 1mb3_A Cell division response 37.7 94 0.0032 21.0 9.5 103 82-184 3-121 (124)
170 3oqb_A Oxidoreductase; structu 37.6 1.1E+02 0.0039 26.3 8.1 59 91-153 55-115 (383)
171 3i42_A Response regulator rece 37.6 97 0.0033 21.2 8.8 105 81-185 4-123 (127)
172 1tvm_A PTS system, galactitol- 37.5 52 0.0018 23.3 4.8 81 83-183 25-112 (113)
173 1jg7_A BGT, DNA beta-glucosylt 37.5 1.6E+02 0.0054 24.0 7.9 51 134-186 266-318 (351)
174 3kht_A Response regulator; PSI 37.2 1.1E+02 0.0037 21.6 11.1 105 80-184 5-128 (144)
175 1f8y_A Nucleoside 2-deoxyribos 36.7 28 0.00094 26.6 3.3 37 117-153 74-114 (157)
176 3h1g_A Chemotaxis protein CHEY 36.7 1E+02 0.0035 21.2 9.8 104 81-184 6-127 (129)
177 1pno_A NAD(P) transhydrogenase 36.7 59 0.002 25.2 5.0 129 51-182 26-179 (180)
178 1i3c_A Response regulator RCP1 36.2 1.2E+02 0.004 21.7 10.8 104 80-183 8-136 (149)
179 3eul_A Possible nitrate/nitrit 36.0 1.2E+02 0.004 21.6 10.6 107 79-186 14-137 (152)
180 3uug_A Multiple sugar-binding 35.8 1.8E+02 0.0062 23.9 10.2 61 121-183 59-121 (330)
181 3rot_A ABC sugar transporter, 35.8 1.8E+02 0.006 23.6 11.3 65 121-185 61-127 (297)
182 2kpo_A Rossmann 2X2 fold prote 35.8 61 0.0021 21.6 4.4 49 61-109 32-81 (110)
183 4gmf_A Yersiniabactin biosynth 35.8 77 0.0026 27.7 6.5 90 51-153 9-102 (372)
184 3bbn_B Ribosomal protein S2; s 35.7 1.6E+02 0.0055 23.9 8.0 30 122-152 158-187 (231)
185 1fy2_A Aspartyl dipeptidase; s 35.4 1.7E+02 0.0058 23.4 8.2 86 67-155 20-123 (229)
186 3cz5_A Two-component response 35.2 1.2E+02 0.0041 21.6 8.5 104 80-185 5-126 (153)
187 3rqi_A Response regulator prot 35.1 1.1E+02 0.0038 22.9 6.9 104 80-183 7-124 (184)
188 2z06_A Putative uncharacterize 35.0 1E+02 0.0036 25.4 6.8 77 51-131 2-88 (252)
189 2dc1_A L-aspartate dehydrogena 34.8 93 0.0032 24.8 6.6 42 114-155 42-84 (236)
190 1eiw_A Hypothetical protein MT 34.7 61 0.0021 23.1 4.7 66 117-183 34-109 (111)
191 3f6p_A Transcriptional regulat 34.0 1.1E+02 0.0038 20.8 9.6 103 82-184 4-119 (120)
192 2jba_A Phosphate regulon trans 33.7 1.1E+02 0.0038 20.7 8.5 100 82-184 4-122 (127)
193 3m9w_A D-xylose-binding peripl 33.6 2E+02 0.0067 23.5 10.3 59 121-182 58-118 (313)
194 2rdm_A Response regulator rece 33.5 1.2E+02 0.0039 20.8 10.2 107 80-186 5-125 (132)
195 3eod_A Protein HNR; response r 33.3 1.2E+02 0.004 20.8 8.6 105 80-184 7-126 (130)
196 3h75_A Periplasmic sugar-bindi 33.3 91 0.0031 26.2 6.6 35 121-155 62-96 (350)
197 2qzj_A Two-component response 33.1 1.2E+02 0.0042 21.1 9.3 105 80-184 4-121 (136)
198 8abp_A L-arabinose-binding pro 32.6 2E+02 0.0068 23.3 9.1 34 121-154 57-91 (306)
199 3al2_A DNA topoisomerase 2-bin 32.5 44 0.0015 27.2 4.1 66 80-153 9-75 (235)
200 2fvt_A Conserved hypothetical 32.4 43 0.0015 24.8 3.7 39 71-109 58-100 (135)
201 3o1i_D Periplasmic protein TOR 32.3 1.8E+02 0.006 23.5 8.1 64 121-185 63-130 (304)
202 1p2f_A Response regulator; DRR 32.1 1.4E+02 0.0049 22.9 7.2 103 82-185 4-118 (220)
203 3p2y_A Alanine dehydrogenase/p 31.7 2.4E+02 0.0083 24.7 9.0 75 79-153 183-303 (381)
204 2qvg_A Two component response 31.7 1.3E+02 0.0045 20.9 9.8 105 80-184 7-135 (143)
205 3i23_A Oxidoreductase, GFO/IDH 31.5 92 0.0031 26.6 6.3 70 78-153 25-97 (349)
206 2o4c_A Erythronate-4-phosphate 31.5 1.7E+02 0.0057 25.7 8.0 77 79-155 115-210 (380)
207 3l07_A Bifunctional protein fo 31.4 1.6E+02 0.0056 24.7 7.6 52 79-130 160-213 (285)
208 1d4o_A NADP(H) transhydrogenas 31.2 1.2E+02 0.0043 23.4 6.1 131 51-184 25-180 (184)
209 3r0j_A Possible two component 30.9 2E+02 0.0067 22.7 10.3 105 80-184 23-141 (250)
210 3p2o_A Bifunctional protein fo 30.5 1.7E+02 0.0059 24.5 7.6 63 68-130 148-212 (285)
211 1uqr_A 3-dehydroquinate dehydr 30.4 1.8E+02 0.0061 22.1 8.6 87 95-181 35-139 (154)
212 2pju_A Propionate catabolism o 30.2 1.8E+02 0.0062 23.3 7.5 100 65-183 93-193 (225)
213 2bru_C NAD(P) transhydrogenase 30.2 63 0.0022 25.1 4.3 127 52-181 34-185 (186)
214 1qgu_B Protein (nitrogenase mo 30.0 1.2E+02 0.0042 27.8 7.2 113 60-185 191-335 (519)
215 3h9u_A Adenosylhomocysteinase; 29.9 67 0.0023 28.9 5.2 77 79-155 210-301 (436)
216 4a5o_A Bifunctional protein fo 29.7 1.8E+02 0.0063 24.4 7.6 52 79-130 160-213 (286)
217 3l3e_A DNA topoisomerase 2-bin 29.6 1.4E+02 0.0047 20.5 7.8 66 79-152 17-83 (107)
218 1zgz_A Torcad operon transcrip 29.6 1.3E+02 0.0044 20.2 9.9 102 82-183 4-118 (122)
219 2q5c_A NTRC family transcripti 29.4 2E+02 0.0069 22.4 7.8 99 66-183 82-182 (196)
220 3tqq_A Methionyl-tRNA formyltr 29.1 1.2E+02 0.0042 25.8 6.6 57 94-150 49-109 (314)
221 3kcn_A Adenylate cyclase homol 29.0 1.6E+02 0.0053 20.9 9.0 103 81-184 5-123 (151)
222 2c4w_A 3-dehydroquinate dehydr 28.6 77 0.0026 24.6 4.5 59 124-182 82-151 (176)
223 3c97_A Signal transduction his 28.5 1.5E+02 0.0051 20.6 10.1 104 81-184 11-130 (140)
224 3cfy_A Putative LUXO repressor 28.5 1.5E+02 0.0052 20.7 10.2 102 82-183 6-121 (137)
225 1dc7_A NTRC, nitrogen regulati 28.3 1.4E+02 0.0047 20.0 6.2 103 82-184 5-121 (124)
226 3gdo_A Uncharacterized oxidore 28.2 2.6E+02 0.0088 23.8 8.7 69 77-153 27-97 (358)
227 1b0a_A Protein (fold bifunctio 28.2 2.4E+02 0.0081 23.8 8.0 64 68-131 147-212 (288)
228 1yio_A Response regulatory pro 28.2 1.9E+02 0.0066 21.8 8.8 101 81-184 5-122 (208)
229 2nvw_A Galactose/lactose metab 28.1 2.1E+02 0.0071 25.8 8.3 70 79-152 67-145 (479)
230 2fi9_A Outer membrane protein; 28.0 50 0.0017 24.1 3.4 38 72-109 60-101 (128)
231 3crn_A Response regulator rece 28.0 1.5E+02 0.0051 20.4 10.2 103 81-183 4-120 (132)
232 1djl_A Transhydrogenase DIII; 27.9 1.2E+02 0.004 24.1 5.6 124 58-184 56-203 (207)
233 3oet_A Erythronate-4-phosphate 27.9 2.3E+02 0.0079 24.9 8.2 76 80-155 119-213 (381)
234 1jbe_A Chemotaxis protein CHEY 27.7 1.5E+02 0.005 20.2 10.3 104 80-183 4-124 (128)
235 2fsv_C NAD(P) transhydrogenase 27.5 69 0.0023 25.3 4.1 66 117-182 117-202 (203)
236 2vqe_B 30S ribosomal protein S 27.4 80 0.0027 26.2 4.8 30 123-153 160-189 (256)
237 3btv_A Galactose/lactose metab 27.1 2.1E+02 0.0073 25.2 8.1 93 51-153 22-127 (438)
238 1a4i_A Methylenetetrahydrofola 26.8 2.2E+02 0.0076 24.1 7.6 54 78-131 163-218 (301)
239 2gwr_A DNA-binding response re 26.7 2.3E+02 0.0078 22.1 10.0 105 81-185 6-123 (238)
240 2m1z_A LMO0427 protein; homolo 26.5 1.2E+02 0.0041 21.4 5.0 77 92-183 22-104 (106)
241 3sqd_A PAX-interacting protein 26.4 1.1E+02 0.0039 24.3 5.6 63 80-153 16-79 (219)
242 2a9o_A Response regulator; ess 26.4 1.5E+02 0.005 19.8 9.8 103 82-184 3-118 (120)
243 3q0i_A Methionyl-tRNA formyltr 26.4 1.7E+02 0.006 24.9 7.0 92 51-150 9-114 (318)
244 1gqo_A Dehydroquinase; dehydra 26.3 2E+02 0.007 21.4 8.7 88 95-182 34-139 (143)
245 2etx_A Mediator of DNA damage 26.3 1.4E+02 0.0047 23.4 6.1 62 79-153 11-72 (209)
246 2oqr_A Sensory transduction pr 26.2 2.2E+02 0.0076 21.8 7.7 104 81-184 5-121 (230)
247 3geb_A EYES absent homolog 2; 26.1 58 0.002 27.1 3.7 34 69-105 218-252 (274)
248 1ys7_A Transcriptional regulat 26.0 2.3E+02 0.0077 21.8 11.1 105 80-184 7-125 (233)
249 1f06_A MESO-diaminopimelate D- 25.4 99 0.0034 26.2 5.3 40 116-155 53-92 (320)
250 4dio_A NAD(P) transhydrogenase 25.3 1.8E+02 0.0061 25.8 7.0 37 117-153 271-313 (405)
251 3m0z_A Putative aldolase; MCSG 25.2 1.7E+02 0.0057 23.9 6.1 87 94-182 149-248 (249)
252 3ngx_A Bifunctional protein fo 25.1 3E+02 0.01 22.9 8.3 63 62-129 137-201 (276)
253 3n58_A Adenosylhomocysteinase; 25.0 2.3E+02 0.0078 25.7 7.7 77 79-155 246-337 (464)
254 3gvp_A Adenosylhomocysteinase 25.0 2.3E+02 0.0079 25.4 7.7 77 79-155 219-310 (435)
255 3rfo_A Methionyl-tRNA formyltr 24.9 1.8E+02 0.006 24.8 6.7 94 51-152 6-113 (317)
256 2k6g_A Replication factor C su 24.8 1.8E+02 0.0063 20.4 7.6 62 79-150 34-97 (109)
257 3sho_A Transcriptional regulat 24.8 2.2E+02 0.0076 21.3 9.2 72 82-153 41-122 (187)
258 3a10_A Response regulator; pho 24.7 1.6E+02 0.0054 19.5 10.2 101 82-182 3-115 (116)
259 2b4a_A BH3024; flavodoxin-like 24.5 1.8E+02 0.0061 20.1 9.5 106 79-184 14-131 (138)
260 1p6q_A CHEY2; chemotaxis, sign 24.2 1.7E+02 0.0058 19.8 8.5 102 81-184 7-127 (129)
261 3g1w_A Sugar ABC transporter; 24.1 2.8E+02 0.0097 22.3 10.7 62 121-184 61-123 (305)
262 3m6y_A 4-hydroxy-2-oxoglutarat 24.1 2E+02 0.0068 23.8 6.4 88 95-184 173-273 (275)
263 1kgs_A DRRD, DNA binding respo 24.0 2.4E+02 0.0083 21.5 10.9 104 81-184 3-120 (225)
264 4a26_A Putative C-1-tetrahydro 23.9 2.6E+02 0.0089 23.6 7.5 65 67-131 152-220 (300)
265 2hqr_A Putative transcriptiona 23.7 2.5E+02 0.0084 21.5 7.6 100 83-185 3-116 (223)
266 1l7b_A DNA ligase; BRCT, autos 23.5 1.4E+02 0.0046 20.3 4.7 63 79-152 9-72 (92)
267 1t35_A Hypothetical protein YV 23.3 88 0.003 24.5 4.2 62 117-180 93-178 (191)
268 4dgs_A Dehydrogenase; structur 23.3 2.2E+02 0.0075 24.5 7.1 76 80-155 171-261 (340)
269 3tb6_A Arabinose metabolism tr 23.3 2.9E+02 0.0098 22.1 11.3 48 137-187 91-138 (298)
270 1dcf_A ETR1 protein; beta-alph 23.2 1.9E+02 0.0064 19.9 10.6 106 80-185 7-130 (136)
271 1srr_A SPO0F, sporulation resp 22.8 1.8E+02 0.0061 19.6 9.0 104 81-184 4-121 (124)
272 2i9n_A MHB4A peptide; beta-hai 22.8 26 0.00089 18.3 0.6 15 131-145 19-33 (33)
273 1nvm_B Acetaldehyde dehydrogen 22.4 2E+02 0.0069 24.3 6.7 72 78-153 27-105 (312)
274 2ayx_A Sensor kinase protein R 22.2 3E+02 0.01 21.9 10.2 104 80-183 129-246 (254)
275 1l0b_A BRCA1; TANDEM-BRCT, thr 22.1 2.4E+02 0.0082 22.1 6.9 66 80-153 7-76 (229)
276 1yya_A Triosephosphate isomera 22.0 3.2E+02 0.011 22.4 7.5 99 52-152 4-127 (250)
277 3to5_A CHEY homolog; alpha(5)b 21.9 2.3E+02 0.0078 20.4 9.2 103 80-183 12-132 (134)
278 3gvx_A Glycerate dehydrogenase 21.9 2.2E+02 0.0077 23.8 6.8 89 80-180 122-225 (290)
279 4g65_A TRK system potassium up 21.8 4.3E+02 0.015 23.6 11.3 131 51-186 211-369 (461)
280 1q0q_A 1-deoxy-D-xylulose 5-ph 21.6 2.9E+02 0.0099 24.5 7.5 88 61-153 44-133 (406)
281 2yq5_A D-isomer specific 2-hyd 21.5 3.2E+02 0.011 23.4 7.8 74 82-155 150-239 (343)
282 3mm4_A Histidine kinase homolo 21.0 2.8E+02 0.0096 21.1 7.7 106 80-185 61-197 (206)
283 2vxb_A DNA repair protein RHP9 21.0 2.5E+02 0.0085 22.7 6.7 72 79-153 4-98 (241)
284 1vl6_A Malate oxidoreductase; 20.9 3.6E+02 0.012 23.7 8.0 67 77-143 189-285 (388)
285 1gtz_A 3-dehydroquinate dehydr 20.6 2.8E+02 0.0096 21.0 8.3 88 95-182 40-146 (156)
286 1mio_B Nitrogenase molybdenum 20.6 1.5E+02 0.0053 26.5 5.8 102 51-154 133-267 (458)
287 4ina_A Saccharopine dehydrogen 20.4 4.2E+02 0.014 23.0 8.6 71 78-150 23-105 (405)
288 3eqz_A Response regulator; str 20.4 2.1E+02 0.0072 19.4 6.1 106 81-186 4-127 (135)
289 3u7q_A Nitrogenase molybdenum- 20.4 2.3E+02 0.0079 25.7 7.0 100 51-152 177-298 (492)
290 1t15_A Breast cancer type 1 su 20.3 2.9E+02 0.0098 21.3 6.9 66 80-153 4-73 (214)
291 1mio_A Nitrogenase molybdenum 20.0 1.9E+02 0.0063 26.7 6.3 100 51-152 167-284 (533)
No 1
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.97 E-value=1.8e-30 Score=238.45 Aligned_cols=210 Identities=19% Similarity=0.193 Sum_probs=173.6
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcc-------hH-HHhhcCCCCCCCcEEEEEecc-cccCH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKK-------KK-EQQQNGTHAFAKGAYYIGKMV-WSKGY 64 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~-------~~-~~~~~~~~~~~~~i~~vG~~~-~~Kg~ 64 (287)
||.||+.|+.+.+ .+.+++.+| ||+|++.|.+... .. .....+. +.+..|+|+|++. +.||+
T Consensus 189 ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~~Kg~ 267 (439)
T 3fro_A 189 ADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGM-DEGVTFMFIGRFDRGQKGV 267 (439)
T ss_dssp CSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTC-CSCEEEEEECCSSCTTBCH
T ss_pred ccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCC-CCCcEEEEEcccccccccH
Confidence 7899999998754 367899999 9999999876521 11 1111111 1124799999999 99999
Q ss_pred HHHHHHHHHHHHhc--CCeEEEEEeCCcCH--HHHHHHHHhcCCceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHH
Q 023072 65 KELLELLDDHQKEL--AGLEVDLYGNGEDF--NQIQEAAEKLKIVVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTT 137 (287)
Q Consensus 65 ~~ll~a~~~l~~~~--~~~~l~i~G~g~~~--~~l~~~~~~~~l~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~ 137 (287)
+.+++++..+.+.. ++++|+|+|+|+.. +.+++++++++ ++.++ |.+++.+ .+|+.||++|+||..|+||++
T Consensus 268 ~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~ 346 (439)
T 3fro_A 268 DVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLV 346 (439)
T ss_dssp HHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHH
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHH
Confidence 99999999998876 89999999999876 88999999998 55554 6577776 999999999999999999999
Q ss_pred HHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHh-CCCC--CccHHHH---hcCCHHHHHHHHHH
Q 023072 138 TAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALA-EEPA--LPTEAQR---HQLSWESATERFLQ 208 (287)
Q Consensus 138 ~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~-~~~~--~~~~~~~---~~~sw~~~~~~~~~ 208 (287)
++||||||+|||+|+.++ .+++.++ +|++++ |+++++++|.++++ +++. .++.+.+ ++|+|+.+++++.+
T Consensus 347 ~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 425 (439)
T 3fro_A 347 ALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVK 425 (439)
T ss_dssp HHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 999999999999999988 7777776 898887 99999999999999 6655 4444433 58999999999999
Q ss_pred HHhccc
Q 023072 209 VAELDQ 214 (287)
Q Consensus 209 ~~~~~~ 214 (287)
+|+...
T Consensus 426 ~~~~~~ 431 (439)
T 3fro_A 426 AYTGSI 431 (439)
T ss_dssp HHHTCS
T ss_pred HHHHHH
Confidence 999654
No 2
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.97 E-value=5e-30 Score=233.54 Aligned_cols=212 Identities=16% Similarity=0.129 Sum_probs=174.5
Q ss_pred CCeeeeCchhhhhc-----c-CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY-----A-NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~-----~-~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
||.||+.|+.+.+. . ++++.+| ||+|++.|.+..........+.......++|+|++.+.||++.+++++..+
T Consensus 157 ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l 236 (394)
T 2jjm_A 157 SDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKI 236 (394)
T ss_dssp SSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHH
Confidence 78999999998652 2 4789999 999999887654332222211112234799999999999999999999999
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+. ++++|+|+|+|++.+.+++.++++++ ++.++|..++..++|+.||++|+||..|++|++++|||+||+|||+++
T Consensus 237 ~~~-~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~ 315 (394)
T 2jjm_A 237 VTE-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTR 315 (394)
T ss_dssp HHS-SCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEEC
T ss_pred Hhh-CCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEec
Confidence 776 67999999999998999999999886 456668655555999999999999999999999999999999999999
Q ss_pred CCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHhccc
Q 023072 153 HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 153 ~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~~ 214 (287)
.++ .+++.++.+|++++ |+++++++|.+++++++. .++.+.+ ++|+|+.+++++.++|+...
T Consensus 316 ~~~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 316 VGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp CTTSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 988 88888888999987 999999999999998654 3444332 68999999999999998554
No 3
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.97 E-value=3.6e-30 Score=233.39 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=176.6
Q ss_pred CCeeeeCchhhhhc------cCCcEEee-ccCCCCccccCcchHHH---hhcCCCCCCCcEEEEEecccccCHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY------ANSIICNV-HGVNPKFLEIGKKKKEQ---QQNGTHAFAKGAYYIGKMVWSKGYKELLELL 71 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~------~~~~i~vi-~gvd~~~~~~~~~~~~~---~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~ 71 (287)
||.||+.|+.+.+. +.+++.+| ||+|.+.|.+....... ...+.......++|+|++.+.||++.+++++
T Consensus 141 ~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~ 220 (394)
T 3okp_A 141 VDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAM 220 (394)
T ss_dssp CSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHH
Confidence 78999999998652 35789999 99999988763322111 1111112224799999999999999999999
Q ss_pred HHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCC-------CcchHHHHHHH
Q 023072 72 DDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-------DVVCTTTAEAL 142 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~-------E~~~~~~~EAm 142 (287)
..+.+..++++|+|+|+|+..+.+++++..+..++.++|.+++.+ ++|+.||++|+||.. |++|++++|||
T Consensus 221 ~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~ 300 (394)
T 3okp_A 221 PQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQ 300 (394)
T ss_dssp HHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHH
T ss_pred HHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHH
Confidence 999998899999999999998889888855555788889997777 999999999999999 99999999999
Q ss_pred hcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHhcc
Q 023072 143 AMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAELD 213 (287)
Q Consensus 143 a~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~ 213 (287)
+||+|||+++.++ .+++.++ +|++++ |+++++++|.+++++++. .++.+.+ ++|+|+.+++++.++|+..
T Consensus 301 a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 379 (394)
T 3okp_A 301 ACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLTNILQSE 379 (394)
T ss_dssp HTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHSC
T ss_pred HcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999988 8888888 999987 999999999999997655 4444333 5799999999999999965
Q ss_pred c
Q 023072 214 Q 214 (287)
Q Consensus 214 ~ 214 (287)
.
T Consensus 380 ~ 380 (394)
T 3okp_A 380 P 380 (394)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.97 E-value=3.8e-30 Score=237.11 Aligned_cols=214 Identities=15% Similarity=0.179 Sum_probs=172.6
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchH---HHhhcCCCCCCCcEEEEEecccccCHHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKK---EQQQNGTHAFAKGAYYIGKMVWSKGYKELLEL 70 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~---~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a 70 (287)
||.||+.|+.+.+ ++.+++.+| ||+|++.|.+..... .....+.......|+|+|++.++||++.++++
T Consensus 185 ~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a 264 (438)
T 3c48_A 185 ADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKA 264 (438)
T ss_dssp CSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTCCSSSEEEEEESCBSGGGCHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCCCCCCcEEEEEeeecccCCHHHHHHH
Confidence 7899999998754 346789999 999999887653321 11111111223479999999999999999999
Q ss_pred HHHHHHhcC--CeEEEEEeC----CcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHH
Q 023072 71 LDDHQKELA--GLEVDLYGN----GEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAE 140 (287)
Q Consensus 71 ~~~l~~~~~--~~~l~i~G~----g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~E 140 (287)
+..+.+..| +++|+|+|+ |+..+.++++++++++ ++.++|.+++.+ .+|+.||++|+||..|+||++++|
T Consensus 265 ~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~E 344 (438)
T 3c48_A 265 VAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAME 344 (438)
T ss_dssp HHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHH
T ss_pred HHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHH
Confidence 999998877 899999999 7777889999998876 577789987776 999999999999999999999999
Q ss_pred HHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhc
Q 023072 141 ALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 212 (287)
Q Consensus 141 Ama~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 212 (287)
||+||+|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. .++.+.+ +.|+|+.+++++.++|+.
T Consensus 345 ama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 424 (438)
T 3c48_A 345 AQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYND 424 (438)
T ss_dssp HHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999988 88888888998887 999999999999998654 4444333 349999999999999995
Q ss_pred ccc
Q 023072 213 DQA 215 (287)
Q Consensus 213 ~~~ 215 (287)
...
T Consensus 425 ~~~ 427 (438)
T 3c48_A 425 AIA 427 (438)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 5
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.97 E-value=1.4e-30 Score=246.88 Aligned_cols=210 Identities=17% Similarity=0.150 Sum_probs=165.3
Q ss_pred CCeeeeCchhhhh---------------ccCCcEEee-ccCCCCccccCcchH-------------------HHhhcCCC
Q 023072 2 GFQVIRLSAATQE---------------YANSIICNV-HGVNPKFLEIGKKKK-------------------EQQQNGTH 46 (287)
Q Consensus 2 ~~~Vi~lS~~~~~---------------~~~~~i~vi-~gvd~~~~~~~~~~~-------------------~~~~~~~~ 46 (287)
||+|+++|+...+ ....++.+| ||||.+.|.|..... ........
T Consensus 242 ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k~~l~~~~gl 321 (536)
T 3vue_A 242 ADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNKEALQAEAGL 321 (536)
T ss_dssp CSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHHHHHHHHTTS
T ss_pred ccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHHHHHHHhcCC
Confidence 7999999987532 124679999 999999887743210 00000011
Q ss_pred ---CCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHh
Q 023072 47 ---AFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIF 119 (287)
Q Consensus 47 ---~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~ 119 (287)
...+.|+|+||+.++||++.|++++.++.+. +.+|+|+|.|+. ...++.....++.++.+++..+..+ .+|
T Consensus 322 ~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 399 (536)
T 3vue_A 322 PVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNAPLAHLIM 399 (536)
T ss_dssp CCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCHHHHHHHH
T ss_pred CCCCCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccHHHHHHHH
Confidence 1123799999999999999999999999654 678899988865 4456777778888888888877666 899
Q ss_pred hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeE----------eec--CHHHHHHHHHHHHhCCC
Q 023072 120 HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCR----------TYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 120 ~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~----------l~~--d~~~l~~~i~~ll~~~~ 186 (287)
+.||+||+||++|+||++++|||+||+|||+|++|| .|++.++.+|+ +++ |+++|+++|.+++....
T Consensus 400 ~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~~ 479 (536)
T 3vue_A 400 AGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVVG 479 (536)
T ss_dssp HHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999 99999999997 454 89999999999887332
Q ss_pred C----CccHHH-HhcCCHHHHHHHHHHHHhcc
Q 023072 187 A----LPTEAQ-RHQLSWESATERFLQVAELD 213 (287)
Q Consensus 187 ~----~~~~~~-~~~~sw~~~~~~~~~~~~~~ 213 (287)
. ++.++. .++|||++++++|+++|+..
T Consensus 480 ~~~~~~~~~~am~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 480 TPAYEEMVRNCMNQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp SHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 2 233332 35799999999999999854
No 6
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.97 E-value=1.9e-30 Score=237.54 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=168.8
Q ss_pred eeeeCchhhhh----c-cCCcEEee-ccCCCCccccCcchHHHhhcCCCC--CCCcEEEEEecccccCHHHHHHHHHHHH
Q 023072 4 QVIRLSAATQE----Y-ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHA--FAKGAYYIGKMVWSKGYKELLELLDDHQ 75 (287)
Q Consensus 4 ~Vi~lS~~~~~----~-~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~--~~~~i~~vG~~~~~Kg~~~ll~a~~~l~ 75 (287)
.||+.|+.+.+ + .+.++.+| ||+|++.|.... . ..+... ....|+|+|++.++||++.+++++..+.
T Consensus 136 ~ii~~S~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~--~---~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~ 210 (413)
T 3oy2_A 136 GVMAMSKCWISDICNYGCKVPINIVSHFVDTKTIYDAR--K---LVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFI 210 (413)
T ss_dssp EEEESSTHHHHHHHHTTCCSCEEECCCCCCCCCCTTHH--H---HTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHH
T ss_pred eEEEcCHHHHHHHHHcCCCCceEEeCCCCCHHHHHHHH--H---hcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHH
Confidence 99999999854 2 25789999 999999882111 1 111111 2237999999999999999999999999
Q ss_pred HhcCCeEEEEEeCCcCH------HHHHHHHHhcCCc---------eEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHH
Q 023072 76 KELAGLEVDLYGNGEDF------NQIQEAAEKLKIV---------VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 76 ~~~~~~~l~i~G~g~~~------~~l~~~~~~~~l~---------~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~ 138 (287)
+..|+++|+|+|+|++. +.++++++++++. +.+.|.+++.+ ++|+.||++|+||..|+||+++
T Consensus 211 ~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E~~~~~~ 290 (413)
T 3oy2_A 211 SKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCS 290 (413)
T ss_dssp HHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCCSSCHHH
T ss_pred HhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcCCCCcHH
Confidence 99999999999999864 7888889888886 33347788777 9999999999999999999999
Q ss_pred HHHHhcCCeEEeecCCC-ccccccCCC---------------eE--eec--CHHHHHHHHHHHHhCCCC--CccHHHH--
Q 023072 139 AEALAMGKIVVCANHPS-NDFFKQFPN---------------CR--TYD--DRNGFVEATLKALAEEPA--LPTEAQR-- 194 (287)
Q Consensus 139 ~EAma~G~PVV~s~~~~-~e~i~~~~~---------------g~--l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~-- 194 (287)
+||||||+|||+|+.++ .+++.++.+ |+ +++ |+++++++| ++++++.. .++.+.+
T Consensus 291 lEAma~G~PvI~s~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~ 369 (413)
T 3oy2_A 291 AEGAVLGKPLIISAVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDF 369 (413)
T ss_dssp HHHHTTTCCEEEECCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEcCCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence 99999999999999988 888888776 77 765 999999999 99998665 4444433
Q ss_pred --hcCCHHHHHHHHHHHHhccc
Q 023072 195 --HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 195 --~~~sw~~~~~~~~~~~~~~~ 214 (287)
++|+|+.+++++.++|+...
T Consensus 370 ~~~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 370 VKTKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp HTTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999554
No 7
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.97 E-value=1.4e-29 Score=232.21 Aligned_cols=211 Identities=15% Similarity=0.080 Sum_probs=169.4
Q ss_pred CCeee-eCchhhhh-ccCCcEEee-ccCCCCccccCcchH-----HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHH
Q 023072 2 GFQVI-RLSAATQE-YANSIICNV-HGVNPKFLEIGKKKK-----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDD 73 (287)
Q Consensus 2 ~~~Vi-~lS~~~~~-~~~~~i~vi-~gvd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~ 73 (287)
++.+| ..|+.+.. ++++++.+| ||+|+..+.+..... .....+.......++|+|++.+.||++.+++++..
T Consensus 176 ~~~~i~~~s~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 255 (416)
T 2x6q_A 176 YDRYIFHLPEYVQPELDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRK 255 (416)
T ss_dssp SSEEEESSGGGSCTTSCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHH
T ss_pred CCEEEEechHHHHhhCCccceEEeCCCCChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHH
Confidence 45555 77887766 566889999 999987665432111 11111111223479999999999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcC-----HHHHHHHHHhcCC--ceEEecCCC---CHH--HHhhhCCEEEcCCCCCcchHHHHHH
Q 023072 74 HQKELAGLEVDLYGNGED-----FNQIQEAAEKLKI--VVRVYPGRD---HAD--LIFHDYKVFLNPSTTDVVCTTTAEA 141 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~-----~~~l~~~~~~~~l--~~~v~g~~~---~~~--~~~~~adv~v~ps~~E~~~~~~~EA 141 (287)
+.+..|+++|+|+|+|++ .+.++++++++++ ++.++|.++ +.+ ++|+.||++|+||..|+||++++||
T Consensus 256 l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEA 335 (416)
T 2x6q_A 256 VKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEA 335 (416)
T ss_dssp HHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHH
T ss_pred HHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHH
Confidence 998889999999999975 4567788888776 677778554 344 8999999999999999999999999
Q ss_pred HhcCCeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH----hcCCHHHHHHHHHHHHhc
Q 023072 142 LAMGKIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR----HQLSWESATERFLQVAEL 212 (287)
Q Consensus 142 ma~G~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~ 212 (287)
||||+|||+++.++ .+++.++.+|++++|+++++++|.+++++++. .++.+.+ ++|+|+.+++++.++|+.
T Consensus 336 ma~G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 336 MWKGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYLDILNS 413 (416)
T ss_dssp HHTTCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHT
T ss_pred HHcCCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 99999999999988 88998888999999999999999999998665 4444333 489999999999999984
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.97 E-value=6.9e-30 Score=238.83 Aligned_cols=211 Identities=16% Similarity=0.185 Sum_probs=169.4
Q ss_pred CCeeeeCchhhhhc----------------cCCcEEee-ccCCCCccccCcch------------------H-HHhhcCC
Q 023072 2 GFQVIRLSAATQEY----------------ANSIICNV-HGVNPKFLEIGKKK------------------K-EQQQNGT 45 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~----------------~~~~i~vi-~gvd~~~~~~~~~~------------------~-~~~~~~~ 45 (287)
||.||+.|+.+.+. +++++.+| ||+|.+.|.+.... . .....+.
T Consensus 207 ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 286 (485)
T 1rzu_A 207 ATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFRI 286 (485)
T ss_dssp CSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHTC
T ss_pred cCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcCC
Confidence 78999999997541 35789999 99999988765421 1 1111111
Q ss_pred CCC-CCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--HHhh
Q 023072 46 HAF-AKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--LIFH 120 (287)
Q Consensus 46 ~~~-~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~ 120 (287)
... ...|+|+|++.++||++.+++++..+.+ ++++|+|+|+|++ .+.+++++.+++.++.++.+.++.+ .+|+
T Consensus 287 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~ 364 (485)
T 1rzu_A 287 DDDGSPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQA 364 (485)
T ss_dssp CCSSSCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHH
T ss_pred CCCCCeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHh
Confidence 111 2379999999999999999999999965 4899999999964 5778888888876777543335444 8999
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC---------CCeEeec--CHHHHHHHHHHHH---hCC
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLKAL---AEE 185 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~---------~~g~l~~--d~~~l~~~i~~ll---~~~ 185 (287)
.||++|+||.+|+||++++||||||+|||+|+.++ .|++.++ .+|++++ |+++++++|.+++ +++
T Consensus 365 ~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~~~~ 444 (485)
T 1rzu_A 365 GCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYYHDP 444 (485)
T ss_dssp HCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHHTCH
T ss_pred cCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999988 8888887 7998886 9999999999999 564
Q ss_pred CC--CccHHHH-hcCCHHHHHHHHHHHHhccc
Q 023072 186 PA--LPTEAQR-HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 186 ~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 214 (287)
.. .++.+.+ ++|+|+.+++++.++|+...
T Consensus 445 ~~~~~~~~~~~~~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 445 KLWTQMQKLGMKSDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 43 4555444 68999999999999998544
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.97 E-value=1.3e-29 Score=236.91 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=168.3
Q ss_pred CCeeeeCchhhhhcc----------------C--CcEEee-ccCCCCccccCcch------------------H-HHhhc
Q 023072 2 GFQVIRLSAATQEYA----------------N--SIICNV-HGVNPKFLEIGKKK------------------K-EQQQN 43 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~----------------~--~~i~vi-~gvd~~~~~~~~~~------------------~-~~~~~ 43 (287)
||+||+.|+.+.+.- + +++.+| ||+|.+.|.+.... . .....
T Consensus 205 ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAM 284 (485)
T ss_dssp CSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHc
Confidence 789999999875521 1 789999 99999988765321 1 11111
Q ss_pred CCCC--CCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--HHHHHHHHHhcCCceEEecCCCCHH--H
Q 023072 44 GTHA--FAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--FNQIQEAAEKLKIVVRVYPGRDHAD--L 117 (287)
Q Consensus 44 ~~~~--~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~l~~~v~g~~~~~~--~ 117 (287)
+... ....|+|+|++.++||++.+++++..+.+ ++++|+|+|+|++ .+.+++++.+++.++.++.+.++.+ .
T Consensus 285 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 362 (485)
T 2qzs_A 285 GLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHR 362 (485)
T ss_dssp TCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHH
T ss_pred CCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHH
Confidence 1111 23479999999999999999999999975 4899999999863 5778888888876776443335444 8
Q ss_pred HhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC---------CCeEeec--CHHHHHHHHHHHH---
Q 023072 118 IFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF---------PNCRTYD--DRNGFVEATLKAL--- 182 (287)
Q Consensus 118 ~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~---------~~g~l~~--d~~~l~~~i~~ll--- 182 (287)
+|+.||++|+||.+|+||++++||||||+|||+|+.++ .+++.++ .+|++++ |+++++++|.+++
T Consensus 363 ~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~ 442 (485)
T 2qzs_A 363 IMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLW 442 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988 8888887 7999887 9999999999999
Q ss_pred hCCCC--CccHHHH-hcCCHHHHHHHHHHHHhccc
Q 023072 183 AEEPA--LPTEAQR-HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 183 ~~~~~--~~~~~~~-~~~sw~~~~~~~~~~~~~~~ 214 (287)
+++.. +++.+.+ ++|+|+.+++++.++|+...
T Consensus 443 ~~~~~~~~~~~~~~~~~fs~~~~~~~~~~ly~~~~ 477 (485)
T 2qzs_A 443 SRPSLWRFVQRQAMAMDFSWQVAAKSYRELYYRLK 477 (485)
T ss_dssp TSHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Confidence 55443 4554444 68999999999999998544
No 10
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.97 E-value=1.5e-29 Score=248.52 Aligned_cols=212 Identities=10% Similarity=0.125 Sum_probs=169.8
Q ss_pred CCeeeeCchhhhh--------cc--------------------CCcEEee-ccCCCCccccCcchHHH------------
Q 023072 2 GFQVIRLSAATQE--------YA--------------------NSIICNV-HGVNPKFLEIGKKKKEQ------------ 40 (287)
Q Consensus 2 ~~~Vi~lS~~~~~--------~~--------------------~~~i~vi-~gvd~~~~~~~~~~~~~------------ 40 (287)
||.||+.|..... +. ..++.+| ||+|.+.|.+.......
T Consensus 475 AD~VIa~S~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l 554 (816)
T 3s28_A 475 TDFIITSTFQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELL 554 (816)
T ss_dssp SSEEEESCHHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccc
Confidence 7899999988654 11 1289999 99999998776532210
Q ss_pred -------hhcCC--CCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCc-----------CHHHHHHHHH
Q 023072 41 -------QQNGT--HAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE-----------DFNQIQEAAE 100 (287)
Q Consensus 41 -------~~~~~--~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-----------~~~~l~~~~~ 100 (287)
...+. ......|+|+|++.+.||++.+++|+..+.+..++++|+|+|+|+ ..+.++++++
T Consensus 555 ~~p~~~r~~lg~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~ 634 (816)
T 3s28_A 555 YSDVENKEHLCVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIE 634 (816)
T ss_dssp HCSCCBTTEESCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhcccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHH
Confidence 00000 122347999999999999999999999998888899999999998 3567888999
Q ss_pred hcCC--ceEEecCCCC----HH--HHhh-hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec-
Q 023072 101 KLKI--VVRVYPGRDH----AD--LIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD- 169 (287)
Q Consensus 101 ~~~l--~~~v~g~~~~----~~--~~~~-~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~- 169 (287)
++++ ++.++|..++ .+ .+|. .+|+||+||..|+||++++||||||+|||+|+.|+ .+++.++.+|++++
T Consensus 635 ~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p 714 (816)
T 3s28_A 635 EYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDP 714 (816)
T ss_dssp HTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECT
T ss_pred HcCCCCcEEEccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCC
Confidence 9987 4555686553 33 6666 67999999999999999999999999999999988 88999999999987
Q ss_pred -CHHHHHHHHHHHH----hCCCC--CccHHHH----hcCCHHHHHHHHHHHHhcc
Q 023072 170 -DRNGFVEATLKAL----AEEPA--LPTEAQR----HQLSWESATERFLQVAELD 213 (287)
Q Consensus 170 -d~~~l~~~i~~ll----~~~~~--~~~~~~~----~~~sw~~~~~~~~~~~~~~ 213 (287)
|+++++++|.+++ .++.. .++.+++ ++|||+.++++++++|+..
T Consensus 715 ~D~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll~lY~~~ 769 (816)
T 3s28_A 715 YHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVY 769 (816)
T ss_dssp TSHHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999999997776 77654 4555433 6899999999999999854
No 11
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.96 E-value=1.2e-29 Score=231.08 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=173.5
Q ss_pred CCCeeeeCchhhhh-----ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEec-ccccCHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQE-----YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDD 73 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~-----~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~-~~~Kg~~~ll~a~~~ 73 (287)
.||.||+.|+.+.+ ++.+++ +| +|+|.+.|.+...... .......++|+|++ .+.||++.+++++..
T Consensus 160 ~~d~ii~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~~~-----~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~ 233 (406)
T 2gek_A 160 KIIGRIAVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLLDG-----YPREGRTVLFLGRYDEPRKGMAVLLAALPK 233 (406)
T ss_dssp TCSEEEESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCCTT-----CSCSSCEEEEESCTTSGGGCHHHHHHHHHH
T ss_pred hCCEEEECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchhhh-----ccCCCeEEEEEeeeCccccCHHHHHHHHHH
Confidence 37899999998754 466788 88 9999887765442210 00112379999999 999999999999999
Q ss_pred HHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCC-CCcchHHHHHHHhcCCeEEe
Q 023072 74 HQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST-TDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 74 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~-~E~~~~~~~EAma~G~PVV~ 150 (287)
+.+..|+++|+|+|++++ +.++++++++..++.++|.+++.+ ++|+.||++|+||. .|++|++++|||+||+|||+
T Consensus 234 l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~ 312 (406)
T 2gek_A 234 LVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVA 312 (406)
T ss_dssp HHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEE
T ss_pred HHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEE
Confidence 998889999999999988 888888877755778889998886 99999999999996 89999999999999999999
Q ss_pred ecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhccc
Q 023072 151 ANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 151 s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 214 (287)
++.++ .+++.++.+|++++ |+++++++|.++++++.. .++.+.+ ++|+|+.+++++.++|+...
T Consensus 313 ~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 384 (406)
T 2gek_A 313 SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVS 384 (406)
T ss_dssp CCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHHHHHHHHC
T ss_pred ecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99988 88888888999884 999999999999998654 3444333 48999999999999999544
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.96 E-value=1.5e-29 Score=226.17 Aligned_cols=198 Identities=14% Similarity=0.028 Sum_probs=168.3
Q ss_pred CCeeeeCchhhhhcc--CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhc
Q 023072 2 GFQVIRLSAATQEYA--NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 78 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~--~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~ 78 (287)
||.||+.|+.+.+.- ..++.+| ||+|++.|.+..... ...+.++|+|++.+.||++.+++++..+
T Consensus 120 ~d~ii~~S~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~--------~~~~~i~~vG~~~~~Kg~~~li~a~~~~---- 187 (342)
T 2iuy_A 120 PVGCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAADQV--------AKEDFLLFMGRVSPHKGALEAAAFAHAC---- 187 (342)
T ss_dssp CTTEEESCHHHHHHTTCCTTSCBCCCCBCGGGSCCSTTCC--------CCCSCEEEESCCCGGGTHHHHHHHHHHH----
T ss_pred ceEEEEcCHHHHHHHhcCCceEEEcCCCChhhcCcccccC--------CCCCEEEEEeccccccCHHHHHHHHHhc----
Confidence 689999999997743 4788999 999998886644311 1123799999999999999999999876
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCC----------CCcchHHHHHHHhcCC
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPST----------TDVVCTTTAEALAMGK 146 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~----------~E~~~~~~~EAma~G~ 146 (287)
+++|+|+|+|++.+.+++++++++.+++++|.+++.+ ++|+.||++|+||. .|+||++++||||||+
T Consensus 188 -~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~ 266 (342)
T 2iuy_A 188 -GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGT 266 (342)
T ss_dssp -TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTC
T ss_pred -CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCC
Confidence 7899999999998999999888877888889999886 99999999999999 7999999999999999
Q ss_pred eEEeecCCC-cccccc--CCCeEeec-CHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHHHhccc
Q 023072 147 IVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 147 PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~~~~~~ 214 (287)
|||+++.++ .+++.+ +.+|++++ |+++++++|.++++ .....+...++|+|+.+++++.++|+...
T Consensus 267 PvI~s~~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (342)
T 2iuy_A 267 PVVGTGNGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA--SDEVRRAAVRLWGHVTIAERYVEQYRRLL 336 (342)
T ss_dssp CEEECCTTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC--HHHHHHHHHHHHBHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999988 888888 78999988 99999999999887 11112223368999999999999998543
No 13
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.96 E-value=1.8e-29 Score=237.06 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=171.8
Q ss_pred CCeeeeCchhhhh-------c-------cCCcEEee-ccCCCCccccCcch----HHHhhcC-----CCCCCCcEEEEEe
Q 023072 2 GFQVIRLSAATQE-------Y-------ANSIICNV-HGVNPKFLEIGKKK----KEQQQNG-----THAFAKGAYYIGK 57 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~-------~~~~i~vi-~gvd~~~~~~~~~~----~~~~~~~-----~~~~~~~i~~vG~ 57 (287)
||.||+.|+.+.+ + +.+++.+| ||+|++.|.+.... ......+ .......|+|+|+
T Consensus 191 ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~~vGr 270 (499)
T 2r60_A 191 ADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAIIASSR 270 (499)
T ss_dssp CSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEEECSC
T ss_pred CCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEEEeec
Confidence 7899999998754 2 44689999 99999988765431 1111100 0111237999999
Q ss_pred cccccCHHHHHHHHHHHHHhcCC-eEEEEEeC--Cc----------C---HHHHHHHHHhcCC--ceEEecCCCCHH--H
Q 023072 58 MVWSKGYKELLELLDDHQKELAG-LEVDLYGN--GE----------D---FNQIQEAAEKLKI--VVRVYPGRDHAD--L 117 (287)
Q Consensus 58 ~~~~Kg~~~ll~a~~~l~~~~~~-~~l~i~G~--g~----------~---~~~l~~~~~~~~l--~~~v~g~~~~~~--~ 117 (287)
+.++||++.+++++..+.+..++ +.|+|+|+ |+ + .+.++++++++++ ++.++|.+++.+ .
T Consensus 271 l~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~ 350 (499)
T 2r60_A 271 LDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAG 350 (499)
T ss_dssp CCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHH
T ss_pred CccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHH
Confidence 99999999999999999876554 58999998 33 1 6788999998887 477789987777 9
Q ss_pred HhhhC----CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC--C
Q 023072 118 IFHDY----KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA--L 188 (287)
Q Consensus 118 ~~~~a----dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~--~ 188 (287)
+|+.| |++|+||..|+||++++||||||+|||+|+.++ .+++.++.+|++++ |+++++++|.++++++.. .
T Consensus 351 ~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~ 430 (499)
T 2r60_A 351 CYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESEETWSA 430 (499)
T ss_dssp HHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHhCHHHHHH
Confidence 99999 999999999999999999999999999999988 88888888899886 999999999999997654 4
Q ss_pred ccHHHH----hcCCHHHHHHHHHHHHhccc
Q 023072 189 PTEAQR----HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 189 ~~~~~~----~~~sw~~~~~~~~~~~~~~~ 214 (287)
++.+.+ ++|+|+.+++++.++|+...
T Consensus 431 ~~~~a~~~~~~~fs~~~~~~~~~~~y~~~~ 460 (499)
T 2r60_A 431 YQEKGKQRVEERYTWQETARGYLEVIQEIA 460 (499)
T ss_dssp HHHHHHHHHHHHSBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444333 46999999999999998544
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.96 E-value=8.1e-29 Score=223.17 Aligned_cols=210 Identities=16% Similarity=0.173 Sum_probs=171.0
Q ss_pred CCeeeeCchhhhh-------ccCCcEEee-ccCCCCccccCcchH----HHhhcCCCCCCCcEEEEEecccccCHHHHHH
Q 023072 2 GFQVIRLSAATQE-------YANSIICNV-HGVNPKFLEIGKKKK----EQQQNGTHAFAKGAYYIGKMVWSKGYKELLE 69 (287)
Q Consensus 2 ~~~Vi~lS~~~~~-------~~~~~i~vi-~gvd~~~~~~~~~~~----~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~ 69 (287)
||.||+.|+.+.+ ++.+++.+| ||+|.+.|.+..... .....+.......++|+|++.++||++.+++
T Consensus 137 ~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 216 (374)
T 2iw1_A 137 STKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIE 216 (374)
T ss_dssp CCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTTCCTTCEEEEEECSCTTTTTHHHHHH
T ss_pred CcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhCCCCCCeEEEEeccchhhcCHHHHHH
Confidence 7899999998754 346789999 999999887654321 1111111122347999999999999999999
Q ss_pred HHHHHHHh-cCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCC
Q 023072 70 LLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGK 146 (287)
Q Consensus 70 a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~ 146 (287)
++..+.+. .++++|+|+|+|+. +.++++++++++ ++.++|..++..++|+.||++|+||..|+||++++||||||+
T Consensus 217 a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~ 295 (374)
T 2iw1_A 217 ALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGL 295 (374)
T ss_dssp HHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCCSCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTC
T ss_pred HHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCcccHHHHHHhcCEEEeccccCCcccHHHHHHHCCC
Confidence 99998776 57999999999875 788888888876 677778766556999999999999999999999999999999
Q ss_pred eEEeecCCC-ccccccCCCeEeec---CHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhc
Q 023072 147 IVVCANHPS-NDFFKQFPNCRTYD---DRNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAEL 212 (287)
Q Consensus 147 PVV~s~~~~-~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~ 212 (287)
|||+++.++ .+++.++.+|++++ |+++++++|.+++++++. .++.+.+ ++++|+...+++.++++.
T Consensus 296 Pvi~~~~~~~~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 296 PVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITG 370 (374)
T ss_dssp CEEEETTSTTTHHHHHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHC
T ss_pred CEEEecCCCchhhhccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999988 88888888998875 999999999999998654 4444433 478999999999988874
No 15
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.95 E-value=1.1e-27 Score=192.53 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=124.2
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~p 128 (287)
.|+|+|++.++||++.+++++..+. ..++++|+|+|+|++.+.+++.++++++++++ |.+++.+ .+|+.||++|+|
T Consensus 4 ~i~~~G~~~~~Kg~~~li~a~~~l~-~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~p 81 (166)
T 3qhp_A 4 KIAMVGRYSNEKNQSVLIKAVALSK-YKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVHA 81 (166)
T ss_dssp EEEEESCCSTTTTHHHHHHHHHTCT-TGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEEC
T ss_pred EEEEEeccchhcCHHHHHHHHHHhc-cCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEEC
Confidence 7999999999999999999999984 44899999999999999999999999988777 8888666 999999999999
Q ss_pred CCCCcchHHHHHHHhcCC-eEEeec-CCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH---hcCCHH
Q 023072 129 STTDVVCTTTAEALAMGK-IVVCAN-HPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR---HQLSWE 200 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~-PVV~s~-~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~ 200 (287)
|..|+||++++|||+||+ |||+++ .++ .+++.++.+.+...|+++++++|.++++++.. .++.+.+ ++|+|+
T Consensus 82 s~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~ 161 (166)
T 3qhp_A 82 ANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLE 161 (166)
T ss_dssp CCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC--
T ss_pred CcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCChh
Confidence 999999999999999998 999954 566 67777754433334999999999999998664 4444333 589999
Q ss_pred HHHHH
Q 023072 201 SATER 205 (287)
Q Consensus 201 ~~~~~ 205 (287)
.++++
T Consensus 162 ~~~~~ 166 (166)
T 3qhp_A 162 NSVIQ 166 (166)
T ss_dssp -----
T ss_pred hhhcC
Confidence 88753
No 16
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.95 E-value=4.4e-27 Score=194.41 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=137.4
Q ss_pred ccCCCCccc--cCcc-----hHHHhhcCCCCCCCcEEEEEecc-cccCHHHHHHHHHHHH--HhcCCeEEEEEeCCc--C
Q 023072 24 HGVNPKFLE--IGKK-----KKEQQQNGTHAFAKGAYYIGKMV-WSKGYKELLELLDDHQ--KELAGLEVDLYGNGE--D 91 (287)
Q Consensus 24 ~gvd~~~~~--~~~~-----~~~~~~~~~~~~~~~i~~vG~~~-~~Kg~~~ll~a~~~l~--~~~~~~~l~i~G~g~--~ 91 (287)
||||++.|. +... .......-..+..+.|+|+|++. +.||++.+++++..+. +..++++|+|+|.++ .
T Consensus 4 ngvd~~~f~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~~~~~ 83 (200)
T 2bfw_A 4 NGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPEL 83 (200)
T ss_dssp -CCCTTTSSGGGSCSCHHHHHHHHHHHTTCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCBCHHH
T ss_pred CccChhhccccccccchhhHHHHHHHHcCCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCCChHH
Confidence 899999998 6642 22122222222334799999999 9999999999999997 777899999999998 6
Q ss_pred HHHHHHHHHhcCCceEE-ecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEe
Q 023072 92 FNQIQEAAEKLKIVVRV-YPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRT 167 (287)
Q Consensus 92 ~~~l~~~~~~~~l~~~v-~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l 167 (287)
.+.+++.+++++ ++++ +|.+++.+ .+|+.||++|+||..|++|++++|||+||+|||+++.++ .+++ ++.+|++
T Consensus 84 ~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~ 161 (200)
T 2bfw_A 84 EGWARSLEEKHG-NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGIL 161 (200)
T ss_dssp HHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEE
T ss_pred HHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEE
Confidence 788999999988 8999 89998766 999999999999999999999999999999999999988 7787 8788988
Q ss_pred ec--CHHHHHHHHHHHHh-CCCC
Q 023072 168 YD--DRNGFVEATLKALA-EEPA 187 (287)
Q Consensus 168 ~~--d~~~l~~~i~~ll~-~~~~ 187 (287)
++ |+++++++|.++++ ++..
T Consensus 162 ~~~~~~~~l~~~i~~l~~~~~~~ 184 (200)
T 2bfw_A 162 VKAGDPGELANAILKALELSRSD 184 (200)
T ss_dssp ECTTCHHHHHHHHHHHHHCCHHH
T ss_pred ecCCCHHHHHHHHHHHHhcCHHH
Confidence 87 99999999999999 7554
No 17
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.94 E-value=3.5e-27 Score=217.06 Aligned_cols=186 Identities=9% Similarity=0.026 Sum_probs=144.3
Q ss_pred eeeeCchhhhh------ccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEec-ccccCHHHHHHHHHHHH
Q 023072 4 QVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKM-VWSKGYKELLELLDDHQ 75 (287)
Q Consensus 4 ~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~-~~~Kg~~~ll~a~~~l~ 75 (287)
.||+.|+.+.+ ++..++.++ +|+|++.|.+... .....+.++|+||+ .++||++.+++|+..+.
T Consensus 197 ~vi~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~~~--------~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~ 268 (413)
T 2x0d_A 197 IAVFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYIND--------KRQKEKIILVYGRPSVKRNAFTLIVEALKIFV 268 (413)
T ss_dssp EEEEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTTTS--------CCCCCSEEEEEECTTCGGGCHHHHHHHHHHHH
T ss_pred EEEEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhccccc--------ccCCCCEEEEEecCchhccCHHHHHHHHHHHH
Confidence 48889998865 344568888 9999876643210 11122369999996 68899999999999998
Q ss_pred HhcCC---eEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 76 KELAG---LEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 76 ~~~~~---~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
+..|+ ++|+|+|+|+.. .++++ +++|+|.+++.+ ++|+.||+||+||..|+||++++||||||+||
T Consensus 269 ~~~~~~~~~~l~ivG~~~~~-------~~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PV 341 (413)
T 2x0d_A 269 QKYDRSNEWKIISVGEKHKD-------IALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRV 341 (413)
T ss_dssp HHCTTGGGCEEEEEESCCCC-------EEEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEE
T ss_pred HhCCCCCceEEEEEcCCchh-------hhcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcE
Confidence 88775 899999998763 13333 566779988777 99999999999999999999999999999999
Q ss_pred EeecCCCccccccCCCeEeec--CHHHHHHHHHHHHhCCCCCccHHHH---hcCCHHHHHHH
Q 023072 149 VCANHPSNDFFKQFPNCRTYD--DRNGFVEATLKALAEEPALPTEAQR---HQLSWESATER 205 (287)
Q Consensus 149 V~s~~~~~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~~~~~~~~---~~~sw~~~~~~ 205 (287)
|+++.|..+++.++.+|++++ |+++++++|.++++|+..+.. ..+ ++|+|+++.++
T Consensus 342 V~~~~g~~e~v~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~-~~~~~~~~~~W~~~~~~ 402 (413)
T 2x0d_A 342 ITNKYENKDLSNWHSNIVSLEQLNPENIAETLVELCMSFNNRDV-DKKESSNMMFYINEFNE 402 (413)
T ss_dssp EEECBTTBCGGGTBTTEEEESSCSHHHHHHHHHHHHHHTC--------CCBSCGGGCCCC--
T ss_pred EEeCCCcchhhhcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH-hHHHHHHhCCHHHHHHH
Confidence 996555588998888998876 999999999999998776332 333 47999999776
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.94 E-value=1e-26 Score=213.42 Aligned_cols=184 Identities=21% Similarity=0.254 Sum_probs=148.8
Q ss_pred CCeeeeCchhhhhccCC--cEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhc
Q 023072 2 GFQVIRLSAATQEYANS--IICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKEL 78 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~--~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~ 78 (287)
||.||+.|+.+.+.-.+ ++.+| ||+|.+.|.+.... .......++|+|++.++||+ +..+.+..
T Consensus 179 ad~vi~~S~~~~~~~~~~~~i~vipngvd~~~f~~~~~~-------~~~~~~~i~~vGrl~~~Kg~------~~~l~~~~ 245 (406)
T 2hy7_A 179 LDVIALVSPAMAAEVVSRDNVFHVGHGVDHNLDQLGDPS-------PYAEGIHAVAVGSMLFDPEF------FVVASKAF 245 (406)
T ss_dssp CSEEEESCGGGGGGCSCSTTEEECCCCBCTTHHHHHCSC-------SCCSSEEEEEECCTTBCHHH------HHHHHHHC
T ss_pred CCEEEEcCHHHHHHHHhcCCEEEEcCCcChHhcCccccc-------ccCCCcEEEEEeccccccCH------HHHHHHhC
Confidence 78999999999874322 89999 99999887543221 11111379999999999999 44445567
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHH-------hcCCe
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEAL-------AMGKI 147 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAm-------a~G~P 147 (287)
|+++|+|+|+|+ ++++++ ++.++|.+++.+ ++|+.||++|+||..|+||++++||| |||+|
T Consensus 246 ~~~~l~ivG~g~--------~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~P 317 (406)
T 2hy7_A 246 PQVTFHVIGSGM--------GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLP 317 (406)
T ss_dssp TTEEEEEESCSS--------CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCC
T ss_pred CCeEEEEEeCch--------HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCc
Confidence 899999999987 334443 677889998777 99999999999999999999999999 99999
Q ss_pred EEeecCCCccccccCCCeEe-ec--CHHHHHHHHHHHHhCCCCCccHHHHhcCCHHHHHHHHHHH--Hhcccc
Q 023072 148 VVCANHPSNDFFKQFPNCRT-YD--DRNGFVEATLKALAEEPALPTEAQRHQLSWESATERFLQV--AELDQA 215 (287)
Q Consensus 148 VV~s~~~~~e~i~~~~~g~l-~~--d~~~l~~~i~~ll~~~~~~~~~~~~~~~sw~~~~~~~~~~--~~~~~~ 215 (287)
||+|+. +.++.+|++ ++ |+++|+++|.++++++.. ...++|+|+.++++++++ |+....
T Consensus 318 VIas~~-----v~~~~~G~l~v~~~d~~~la~ai~~ll~~~~~----~~~~~~sw~~~a~~~~~~~~y~~~~~ 381 (406)
T 2hy7_A 318 AVCPNA-----VVGPYKSRFGYTPGNADSVIAAITQALEAPRV----RYRQCLNWSDTTDRVLDPRAYPETRL 381 (406)
T ss_dssp EEEEGG-----GTCSCSSEEEECTTCHHHHHHHHHHHHHCCCC----CCSCCCBHHHHHHHHHCGGGSGGGBS
T ss_pred EEEehh-----cccCcceEEEeCCCCHHHHHHHHHHHHhCcch----hhhhcCCHHHHHHHHHHhhcccccCc
Confidence 999987 666778887 75 999999999999998762 223689999999999999 885543
No 19
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.92 E-value=5.2e-25 Score=209.70 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=156.9
Q ss_pred CCeeeeCchhhhhccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC
Q 023072 2 GFQVIRLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG 80 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~ 80 (287)
||.||+.|+....+. +++.+| |.+.+....+..........-..+.+..++++|++.+ ||++.+++++..+.+..|+
T Consensus 329 ~d~~i~~s~~~~~~~-~~i~~ipn~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~~~~ 406 (568)
T 2vsy_A 329 GDAFALPPALEPFYS-EHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFNNSY-KLNPQSMARMLAVLREVPD 406 (568)
T ss_dssp ECTTTSCTTTGGGCS-SEEEECSSCSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECCCGG-GCCHHHHHHHHHHHHHCTT
T ss_pred ECCCcCCcccccCCc-ceeEcCCCcCCCCCCCCCCCCCCCccccCCCCCCEEEEeCCccc-cCCHHHHHHHHHHHHhCCC
Confidence 578889999887765 788888 7555432111101000000001112235789999999 9999999999999888899
Q ss_pred eEEEEEe-CCcCHHHHHHHHHhcCCc---eEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe----
Q 023072 81 LEVDLYG-NGEDFNQIQEAAEKLKIV---VRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC---- 150 (287)
Q Consensus 81 ~~l~i~G-~g~~~~~l~~~~~~~~l~---~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~---- 150 (287)
++|+|+| +|+..+.+++.+.++++. +.|.|.+++.+ .+|+.+|+||+||.+ ++|++++|||+||+|||+
T Consensus 407 ~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~~g~ 485 (568)
T 2vsy_A 407 SVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTTPGE 485 (568)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCS
T ss_pred cEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEeccCC
Confidence 9999999 888888999999998874 66779988666 999999999999999 999999999999999999
Q ss_pred ---ecCC-------C-ccccccCCCeEeecCHHHHHHHHHHHHhCCCC--CccHHHH------hcCCHHHHHHHHHHHHh
Q 023072 151 ---ANHP-------S-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPA--LPTEAQR------HQLSWESATERFLQVAE 211 (287)
Q Consensus 151 ---s~~~-------~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~--~~~~~~~------~~~sw~~~~~~~~~~~~ 211 (287)
|+.+ | .+++.+ |++++++++.++++++.. .++.+.+ +.|+|+.+++++.++|+
T Consensus 486 ~~~s~~~~~~l~~~g~~e~v~~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~y~ 557 (568)
T 2vsy_A 486 TFAARVAGSLNHHLGLDEMNVA--------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQ 557 (568)
T ss_dssp SGGGSHHHHHHHHHTCGGGBCS--------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHCCChhhhcC--------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHH
Confidence 8887 6 454433 899999999999998765 4444322 57999999999999998
Q ss_pred ccc
Q 023072 212 LDQ 214 (287)
Q Consensus 212 ~~~ 214 (287)
...
T Consensus 558 ~~~ 560 (568)
T 2vsy_A 558 ALA 560 (568)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 20
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.91 E-value=2.2e-24 Score=175.56 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=120.4
Q ss_pred CcEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHH--hcCC--ceEEecCCCCHH--HHhhhCC
Q 023072 50 KGAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE--KLKI--VVRVYPGRDHAD--LIFHDYK 123 (287)
Q Consensus 50 ~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~--~~~l--~~~v~g~~~~~~--~~~~~ad 123 (287)
+.|+|+|++.+.||++.+++++..+ ++++|+|+|.+++.+.+++.++ ++++ ++.++|.+++.+ .+|+.||
T Consensus 24 ~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 24 DFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp SCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 3799999999999999999999887 6899999999988777888777 5544 777889998876 9999999
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccCCCeEee-cCHHHHHHHHHHHHhCCCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQFPNCRTY-DDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~~~g~l~-~d~~~l~~~i~~ll~~~~~ 187 (287)
++|+||..|++|++++|||+||+|||+++.++ .+++.++.+|+++ .|+++++++|.++++++..
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKTGYLVNADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTTEEEECSCHHHHHHHHHHHHHCTTT
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCccEEeCCCHHHHHHHHHHHHhCHHH
Confidence 99999999999999999999999999999987 8888888889776 5999999999999998764
No 21
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.91 E-value=5e-24 Score=199.23 Aligned_cols=193 Identities=14% Similarity=0.094 Sum_probs=143.5
Q ss_pred CcEEee-ccCCCCccccCcc---hH-HHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC----eEEEEEeC
Q 023072 18 SIICNV-HGVNPKFLEIGKK---KK-EQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG----LEVDLYGN 88 (287)
Q Consensus 18 ~~i~vi-~gvd~~~~~~~~~---~~-~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~----~~l~i~G~ 88 (287)
.++.+| +|||++.|.+... .. ...........+.|+|+||+.+.||++.+|+|++.+.+.+|+ +.|+++|.
T Consensus 219 ~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~ 298 (482)
T 1uqt_A 219 FRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAP 298 (482)
T ss_dssp EEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTTTCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECC
T ss_pred EEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhCCCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEEC
Confidence 468888 9999988864211 00 000011111234799999999999999999999999887774 77999986
Q ss_pred C-----cCH----HHHHHHHHhcCC--------ceEEe-cCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC--
Q 023072 89 G-----EDF----NQIQEAAEKLKI--------VVRVY-PGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK-- 146 (287)
Q Consensus 89 g-----~~~----~~l~~~~~~~~l--------~~~v~-g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~-- 146 (287)
+ ++. +.+++++.+.+. .+.++ |.+++.+ .+|+.||+||+||..||||++++||||||+
T Consensus 299 p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~ 378 (482)
T 1uqt_A 299 TSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPA 378 (482)
T ss_dssp BCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTT
T ss_pred CCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCC
Confidence 3 222 234444444221 35654 6677777 999999999999999999999999999997
Q ss_pred ---eEEeecCCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccHHHH---hcCCHHHHHHHHHHHHhcc
Q 023072 147 ---IVVCANHPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTEAQR---HQLSWESATERFLQVAELD 213 (287)
Q Consensus 147 ---PVV~s~~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~~~ 213 (287)
|||+|+.+| .+.+ + +|++++ |+++++++|.+++++++. .+..+.+ ..|+|+..++++++.|+..
T Consensus 379 ~~gpvV~S~~~G~~~~l-~--~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 379 NPGVLVLSQFAGAANEL-T--SALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (482)
T ss_dssp SCCEEEEETTBGGGGTC-T--TSEEECTTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCHHHh-C--CeEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 999999866 6666 3 788886 999999999999987543 2333222 4799999999999999855
No 22
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.88 E-value=1.4e-22 Score=182.62 Aligned_cols=200 Identities=11% Similarity=0.016 Sum_probs=146.1
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-cc-CCCCccccCc--chHHHhhcCCCCCCCcEEEEEecccc-cCHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HG-VNPKFLEIGK--KKKEQQQNGTHAFAKGAYYIGKMVWS-KGYKELLEL 70 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~g-vd~~~~~~~~--~~~~~~~~~~~~~~~~i~~vG~~~~~-Kg~~~ll~a 70 (287)
||.|++.|+...+ ++++++.++ || +|...+.+.. ........ ......++++|++.+. ||++.++++
T Consensus 151 ~d~ii~~s~~~~~~~~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~--~~~~~vl~~~gr~~~~~K~~~~li~a 228 (375)
T 3beo_A 151 ADLHFSPTAKSATNLQKENKDESRIFITGNTAIDALKTTVKETYSHPVLEKL--GNNRLVLMTAHRRENLGEPMRNMFRA 228 (375)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT--TTSEEEEEECCCGGGTTHHHHHHHHH
T ss_pred hheeeCCCHHHHHHHHHcCCCcccEEEECChhHhhhhhhhhhhhhHHHHHhc--cCCCeEEEEecccccchhHHHHHHHH
Confidence 7899999998754 356789999 88 7876554332 11111110 1111246788998875 999999999
Q ss_pred HHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhc-C--CceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcC
Q 023072 71 LDDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-K--IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~--l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G 145 (287)
+..+.+..|++++++ |.|++ ..+++.++++ + .++.+.|..++.+ .+|+.||++|+|| |.+++|||+||
T Consensus 229 ~~~l~~~~~~~~~i~-~~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G 301 (375)
T 3beo_A 229 IKRLVDKHEDVQVVY-PVHMN-PVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLG 301 (375)
T ss_dssp HHHHHHHCTTEEEEE-ECCSC-HHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHT
T ss_pred HHHHHhhCCCeEEEE-eCCCC-HHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcC
Confidence 999988888998654 66655 2333333332 2 3677878777666 9999999999999 67799999999
Q ss_pred CeEEeecC-CC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHH---HHhcCCHHHHHHHHHHHHh
Q 023072 146 KIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 146 ~PVV~s~~-~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~---~~~~~sw~~~~~~~~~~~~ 211 (287)
+|||+++. ++ .+++.++ +|++++ |+++++++|.++++|++. +++.+ ..+.|+|+++++.+.+.++
T Consensus 302 ~Pvi~~~~~~~~~e~v~~g-~g~~v~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (375)
T 3beo_A 302 VPVLVLRDTTERPEGIEAG-TLKLAGTDEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAILKHFN 374 (375)
T ss_dssp CCEEECSSCCSCHHHHHTT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHHHHTT
T ss_pred CCEEEecCCCCCceeecCC-ceEEcCCCHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHHHHhh
Confidence 99999965 66 7777776 898885 999999999999998653 22222 2247999999999988764
No 23
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.86 E-value=1.3e-21 Score=175.81 Aligned_cols=195 Identities=11% Similarity=0.017 Sum_probs=146.1
Q ss_pred CCeeeeCchhhhhccCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEE-EEEecccccCHHHHHHHHHHHHHhcC
Q 023072 2 GFQVIRLSAATQEYANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAY-YIGKMVWSKGYKELLELLDDHQKELA 79 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~-~vG~~~~~Kg~~~ll~a~~~l~~~~~ 79 (287)
+|.|++.|+.. ++ ++.++ ||++++++.+..... ..+.....+.++ +.|++.+.||.+.+++++..+.+
T Consensus 142 ~d~v~~~~~~~--~~--~~~~i~n~v~~~~~~~~~~~~---~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~--- 211 (364)
T 1f0k_A 142 ATKVMQAFPGA--FP--NAEVVGNPVRTDVLALPLPQQ---RLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD--- 211 (364)
T ss_dssp CSEEEESSTTS--SS--SCEECCCCCCHHHHTSCCHHH---HHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---
T ss_pred CCEEEecChhh--cC--CceEeCCccchhhcccchhhh---hcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---
Confidence 67888887765 44 57788 999988775532211 111111122344 45689999999999999999854
Q ss_pred CeE-EEEEeCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCc-
Q 023072 80 GLE-VDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSN- 156 (287)
Q Consensus 80 ~~~-l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~- 156 (287)
+++ ++|+|+++ .+.+++.++++++ ++.+.|..++...+|+.||++|+||. |++++|||+||+|||+++.++.
T Consensus 212 ~~~~l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~ 286 (364)
T 1f0k_A 212 SVTIWHQSGKGS-QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKD 286 (364)
T ss_dssp GEEEEEECCTTC-HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTT
T ss_pred CcEEEEEcCCch-HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCc
Confidence 678 56679887 5788888888875 78888988666699999999999983 9999999999999999999862
Q ss_pred c-------ccccCCCeEeec--C--HHHHHHHHHHHHhCCCC--CccHHHH---hcCCHHHHHHHHHHHHhcc
Q 023072 157 D-------FFKQFPNCRTYD--D--RNGFVEATLKALAEEPA--LPTEAQR---HQLSWESATERFLQVAELD 213 (287)
Q Consensus 157 e-------~i~~~~~g~l~~--d--~~~l~~~i~~ll~~~~~--~~~~~~~---~~~sw~~~~~~~~~~~~~~ 213 (287)
+ .+.+...|++++ | +++++++|.++ |++. +++.+.+ +.|+|+.++++++++|+..
T Consensus 287 ~~q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 287 RQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVSRVARAL 357 (364)
T ss_dssp CHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 1 344444598886 5 89999999988 4443 4454444 4799999999999999843
No 24
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.86 E-value=1.5e-21 Score=181.52 Aligned_cols=189 Identities=16% Similarity=0.101 Sum_probs=138.4
Q ss_pred cEEee-ccCCCCccccCcc---hHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHHhcCC---eEEEEEeC---
Q 023072 19 IICNV-HGVNPKFLEIGKK---KKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQKELAG---LEVDLYGN--- 88 (287)
Q Consensus 19 ~i~vi-~gvd~~~~~~~~~---~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~---~~l~i~G~--- 88 (287)
++.++ +|||++.|.+... ....... ...+.|+++||+++.||++.+|+|+ ++.+++|+ +.|+++|.
T Consensus 250 ~v~viP~GID~~~f~~~~~~~~~~lr~~~---~~~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr 325 (496)
T 3t5t_A 250 RLRTMPLGYSPLTLDGRNPQLPEGIEEWA---DGHRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNR 325 (496)
T ss_dssp EEEECCCCBCGGGC----CCCCTTHHHHH---TTSEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCC
T ss_pred EEEEeccEeCHHHhchhhHHHHHHHHHHh---CCceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCC
Confidence 56778 9999999876532 1111111 1234799999999999999999999 88888886 55887863
Q ss_pred --CcCHHH----HHHHHHhcCC-----ceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcC---CeEEeec
Q 023072 89 --GEDFNQ----IQEAAEKLKI-----VVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMG---KIVVCAN 152 (287)
Q Consensus 89 --g~~~~~----l~~~~~~~~l-----~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G---~PVV~s~ 152 (287)
+++... +++++.+.+. .+++++..++.+ .+|+.||+||+||..||||++.+|||||| .|+|+|+
T Consensus 326 ~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe 405 (496)
T 3t5t_A 326 LYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSE 405 (496)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEET
T ss_pred CCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEEeC
Confidence 333333 4444444322 567778887777 99999999999999999999999999997 8999999
Q ss_pred CCC-ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC---CccH---HHHhcCCHHHHHHHHHHHHhcc
Q 023072 153 HPS-NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA---LPTE---AQRHQLSWESATERFLQVAELD 213 (287)
Q Consensus 153 ~~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~---~~~~---~~~~~~sw~~~~~~~~~~~~~~ 213 (287)
.+| .+.+.+ +|++++ |+++++++|.++|+++.. .+.. +....+++..-++.+++.....
T Consensus 406 ~aGa~~~l~~--~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 406 TCGAAEVLGE--YCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp TBTTHHHHGG--GSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHH
T ss_pred CCCCHHHhCC--CEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHhhc
Confidence 976 666643 688886 999999999999998754 1111 2225788888888887766543
No 25
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.86 E-value=5e-21 Score=181.78 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=76.6
Q ss_pred HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccccC-------CCeEeec-----CHHHHHHHHHHHHh
Q 023072 117 LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFKQF-------PNCRTYD-----DRNGFVEATLKALA 183 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~~-------~~g~l~~-----d~~~l~~~i~~ll~ 183 (287)
++|+.||+||+||++|+||++++||||||+|||+|+.+| .+.+.++ .+|+++. |+++++++|.+++.
T Consensus 514 ~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~ 593 (725)
T 3nb0_A 514 EFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYME 593 (725)
T ss_dssp HHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 7777765 2586651 56666666665553
Q ss_pred ----CCCC---CccHHHH---hcCCHHHHHHHHHHHHhccc
Q 023072 184 ----EEPA---LPTEAQR---HQLSWESATERFLQVAELDQ 214 (287)
Q Consensus 184 ----~~~~---~~~~~~~---~~~sw~~~~~~~~~~~~~~~ 214 (287)
.++. .++.+.+ ++|+|++++++++++|+...
T Consensus 594 ~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl~~Ye~aL 634 (725)
T 3nb0_A 594 EFVKKTRRQRINQRNATEALSDLLDWKRMGLEYVKARQLAL 634 (725)
T ss_dssp HHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3322 2333332 58999999999999998644
No 26
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.85 E-value=7.3e-22 Score=178.64 Aligned_cols=206 Identities=12% Similarity=0.049 Sum_probs=146.3
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccCCCCccccCcc----h-HHHhhcCC---C-CCC-CcEEEEEecccc-cC
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGVNPKFLEIGKK----K-KEQQQNGT---H-AFA-KGAYYIGKMVWS-KG 63 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gvd~~~~~~~~~----~-~~~~~~~~---~-~~~-~~i~~vG~~~~~-Kg 63 (287)
||.|++.|+...+ ++++++.++ ||+.+..+..... . ........ . ... ..++++|++.+. ||
T Consensus 142 ~d~ii~~s~~~~~~l~~~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg 221 (384)
T 1vgv_A 142 AMYHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRG 221 (384)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHH
T ss_pred ccEEEcCcHHHHHHHHHcCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchH
Confidence 7899999988754 346789999 8854332221110 0 00000111 1 111 257789999876 99
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEE-eCCc-CHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHH
Q 023072 64 YKELLELLDDHQKELAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 139 (287)
Q Consensus 64 ~~~ll~a~~~l~~~~~~~~l~i~-G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~ 139 (287)
++.+++++..+.+..|+++|++. |.++ ..+.+++.+... .++.++|..++.+ ++|+.||++|+|| |.+++
T Consensus 222 ~~~li~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~-~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~l 295 (384)
T 1vgv_A 222 FEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV-KNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQE 295 (384)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGG
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcC-CCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHH
Confidence 99999999999888889999886 5443 234455543322 3677877766655 9999999999999 44589
Q ss_pred HHHhcCCeEEeecC-CC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHH---HHhcCCHHHHHHHHHHHHh
Q 023072 140 EALAMGKIVVCANH-PS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEA---QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 140 EAma~G~PVV~s~~-~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~---~~~~~sw~~~~~~~~~~~~ 211 (287)
|||+||+|||+++. ++ .+++.++ +|++++ |+++++++|.++++|++. +++.+ ....|+|+++++.+.+.|.
T Consensus 296 EA~a~G~PvI~~~~~~~~~e~v~~g-~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 374 (384)
T 1vgv_A 296 EAPSLGKPVLVMRDTTERPEAVTAG-TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRI 374 (384)
T ss_dssp TGGGGTCCEEEESSCCSCHHHHHHT-SEEEECSSHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHHHTCC
T ss_pred HHHHcCCCEEEccCCCCcchhhhCC-ceEEeCCCHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999987 66 7777776 898886 999999999999998653 22221 1247999999999999887
Q ss_pred ccc
Q 023072 212 LDQ 214 (287)
Q Consensus 212 ~~~ 214 (287)
...
T Consensus 375 ~~~ 377 (384)
T 1vgv_A 375 SLG 377 (384)
T ss_dssp CC-
T ss_pred hhc
Confidence 544
No 27
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.83 E-value=4.7e-20 Score=167.34 Aligned_cols=180 Identities=12% Similarity=0.009 Sum_probs=129.0
Q ss_pred CCeeeeCchhhhhc----cCCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHHHH
Q 023072 2 GFQVIRLSAATQEY----ANSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDHQK 76 (287)
Q Consensus 2 ~~~Vi~lS~~~~~~----~~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l~~ 76 (287)
||.|++.|+...+. .-.++.++ |+. |....... .... .+.+++.|+ +.||++.+++|+..+.+
T Consensus 154 ~d~ii~~S~~~~~~l~~~g~~ki~vi~n~~----f~~~~~~~-----~~l~-~~vi~~~~~--~~k~~~~ll~A~~~l~~ 221 (374)
T 2xci_A 154 FDLIIMRTQEDVEKFKTFGAKRVFSCGNLK----FICQKGKG-----IKLK-GEFIVAGSI--HTGEVEIILKAFKEIKK 221 (374)
T ss_dssp CSEEEESCHHHHHHHHTTTCCSEEECCCGG----GCCCCCSC-----CCCS-SCEEEEEEE--CGGGHHHHHHHHHHHHT
T ss_pred CCEEEECCHHHHHHHHHcCCCeEEEcCCCc----cCCCcChh-----hhhc-CCEEEEEeC--CCchHHHHHHHHHHHHh
Confidence 78999999998652 11278888 662 11111100 0000 124555554 56899999999999988
Q ss_pred hcCCeEEEEEeCCcCH-HHHHHHHHhcCCc----------eEEecCCCCHHHHhhhCCEEEcCCCC-CcchHHHHHHHhc
Q 023072 77 ELAGLEVDLYGNGEDF-NQIQEAAEKLKIV----------VRVYPGRDHADLIFHDYKVFLNPSTT-DVVCTTTAEALAM 144 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~-~~l~~~~~~~~l~----------~~v~g~~~~~~~~~~~adv~v~ps~~-E~~~~~~~EAma~ 144 (287)
..|+++|+|+|+|++. +.++++++++++. +.+.+...+...+|+.||++++||.. |++|++++|||||
T Consensus 222 ~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~ 301 (374)
T 2xci_A 222 TYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYPVGKIAIVGGTFVNIGGHNLLEPTCW 301 (374)
T ss_dssp TCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTT
T ss_pred hCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHHhCCEEEECCcccCCCCcCHHHHHHh
Confidence 8899999999999875 5899999988875 22234455556999999998887654 7789999999999
Q ss_pred CCeEEee-cCCC-ccccccC-CCeEe--ecCHHHHHHHHHHHHhCCCC--CccHHHH
Q 023072 145 GKIVVCA-NHPS-NDFFKQF-PNCRT--YDDRNGFVEATLKALAEEPA--LPTEAQR 194 (287)
Q Consensus 145 G~PVV~s-~~~~-~e~i~~~-~~g~l--~~d~~~l~~~i~~ll~~~~~--~~~~~~~ 194 (287)
|+|||++ +.++ .+.+.+. .+|++ +.|+++|+++|.++++| +. +++.+++
T Consensus 302 G~PVI~~~~~~~~~e~~~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar 357 (374)
T 2xci_A 302 GIPVIYGPYTHKVNDLKEFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSR 357 (374)
T ss_dssp TCCEEECSCCTTSHHHHHHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHH
T ss_pred CCCEEECCCccChHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 9999986 5566 5655432 24433 45999999999999998 66 5665554
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.75 E-value=5.6e-19 Score=159.40 Aligned_cols=198 Identities=8% Similarity=-0.064 Sum_probs=135.3
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-ccC-CCCccccCcchHHHhhcCCCCC-CCcEEEEEecccccCHHHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-HGV-NPKFLEIGKKKKEQQQNGTHAF-AKGAYYIGKMVWSKGYKELLELLD 72 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~gv-d~~~~~~~~~~~~~~~~~~~~~-~~~i~~vG~~~~~Kg~~~ll~a~~ 72 (287)
||.+++.|+...+ ++++++.++ |++ |...+..... . ....... ...++++||+...||++.+++++.
T Consensus 147 ~~~~~~~s~~~~~~l~~~g~~~~ki~vi~n~~~d~~~~~~~~~-~---~~~~~~~~~~vl~~~gr~~~~k~~~~ll~a~~ 222 (376)
T 1v4v_A 147 TDLDFAPTPLAKANLLKEGKREEGILVTGQTGVDAVLLAAKLG-R---LPEGLPEGPYVTVTMHRRENWPLLSDLAQALK 222 (376)
T ss_dssp CSEEEESSHHHHHHHHTTTCCGGGEEECCCHHHHHHHHHHHHC-C---CCTTCCSSCEEEECCCCGGGGGGHHHHHHHHH
T ss_pred hceeeCCCHHHHHHHHHcCCCcceEEEECCchHHHHhhhhhhh-H---HHHhcCCCCEEEEEeCcccchHHHHHHHHHHH
Confidence 6889999988653 456788888 754 4322211100 0 0011111 124567889988889999999999
Q ss_pred HHHHhcCCeEEEEE-eCCc-CHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 73 DHQKELAGLEVDLY-GNGE-DFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 73 ~l~~~~~~~~l~i~-G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
.+.+.+|+++++++ |+++ ..+.+++.+... .++.+.|.+.+.+ .+|+.||++|.|| + |+ ++||||||+||
T Consensus 223 ~l~~~~~~~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g~-~lEA~a~G~Pv 296 (376)
T 1v4v_A 223 RVAEAFPHLTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRASLLLVTDS--G--GL-QEEGAALGVPV 296 (376)
T ss_dssp HHHHHCTTSEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHTEEEEEESC--H--HH-HHHHHHTTCCE
T ss_pred HHHhhCCCeEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHhCcEEEECC--c--CH-HHHHHHcCCCE
Confidence 99888889999886 7655 345566654332 2677787665555 8999999999998 3 34 88999999999
Q ss_pred Eeec-CCC-ccccccCCCeEee-cCHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHHHh
Q 023072 149 VCAN-HPS-NDFFKQFPNCRTY-DDRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 149 V~s~-~~~-~e~i~~~~~g~l~-~d~~~l~~~i~~ll~~~~~--~~~~~~~~~~sw~~~~~~~~~~~~ 211 (287)
|+++ .++ .+.+.+ .+|+++ .|+++++++|.++++|++. .++. ....|.|...++++.+.+.
T Consensus 297 I~~~~~~~~~~~~~~-g~g~lv~~d~~~la~~i~~ll~d~~~~~~~~~-~~~~~~~~~~~~~i~~~i~ 362 (376)
T 1v4v_A 297 VVLRNVTERPEGLKA-GILKLAGTDPEGVYRVVKGLLENPEELSRMRK-AKNPYGDGKAGLMVARGVA 362 (376)
T ss_dssp EECSSSCSCHHHHHH-TSEEECCSCHHHHHHHHHHHHTCHHHHHHHHH-SCCSSCCSCHHHHHHHHHH
T ss_pred EeccCCCcchhhhcC-CceEECCCCHHHHHHHHHHHHhChHhhhhhcc-cCCCCCCChHHHHHHHHHH
Confidence 9985 466 555544 478888 5999999999999997543 2332 2245666566666666555
No 29
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.64 E-value=1.7e-16 Score=141.80 Aligned_cols=177 Identities=11% Similarity=-0.088 Sum_probs=120.4
Q ss_pred CCCeeeeCchhhhhc------cCCcEEeeccCCCCccccCcchHHHhhcCCCCCCCcEEEEEecccccCHHHHHHHHHHH
Q 023072 1 MGFQVIRLSAATQEY------ANSIICNVHGVNPKFLEIGKKKKEQQQNGTHAFAKGAYYIGKMVWSKGYKELLELLDDH 74 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~~------~~~~i~vi~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~~vG~~~~~Kg~~~ll~a~~~l 74 (287)
.||.||+.|+.+.+. +..++.+++-++... +.+. ......+.|+|+|++.....+.. +
T Consensus 133 ~aD~Ii~~S~~~~~~l~~~G~~~~ki~~~~~~~~~~--~~~~-------~~~~~~~~i~yaG~l~k~~~L~~-------l 196 (339)
T 3rhz_A 133 KADVVVAPSQKMIDKLRDFGMNVSKTVVQGMWDHPT--QAPM-------FPAGLKREIHFPGNPERFSFVKE-------W 196 (339)
T ss_dssp TCSEEEESCHHHHHHHHHTTCCCSEEEECCSCCCCC--CCCC-------CCCEEEEEEEECSCTTTCGGGGG-------C
T ss_pred HCCEEEECCHHHHHHHHHcCCCcCceeecCCCCccC--cccc-------cccCCCcEEEEeCCcchhhHHHh-------C
Confidence 489999999998753 335564443223211 1000 01112237999999985332221 1
Q ss_pred HHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCC-------CcchHHHHHHHhcC
Q 023072 75 QKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTT-------DVVCTTTAEALAMG 145 (287)
Q Consensus 75 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~-------E~~~~~~~EAma~G 145 (287)
.++++|+|+|+|++. +++ ++.++|.+++.+ .+|+.+|+.+.+... ..+|.+++||||||
T Consensus 197 ---~~~~~f~ivG~G~~~--------~l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G 264 (339)
T 3rhz_A 197 ---KYDIPLKVYTWQNVE--------LPQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAG 264 (339)
T ss_dssp ---CCSSCEEEEESCCCC--------CCT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHT
T ss_pred ---CCCCeEEEEeCCccc--------CcC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcC
Confidence 378999999999874 355 888899999888 788888887775111 23589999999999
Q ss_pred CeEEeecCCC-ccccccCCCeEeecCHHHHHHHHHHHHhCCCCCccHHHH---hcCCHHHHHHH
Q 023072 146 KIVVCANHPS-NDFFKQFPNCRTYDDRNGFVEATLKALAEEPALPTEAQR---HQLSWESATER 205 (287)
Q Consensus 146 ~PVV~s~~~~-~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~~~~~~~~---~~~sw~~~~~~ 205 (287)
+|||+++.++ .+++.++..|+++++.++++++|..+..+.-..|+.+++ +.++|+..+++
T Consensus 265 ~PVI~~~~~~~~~~v~~~~~G~~~~~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~~~~f~k~ 328 (339)
T 3rhz_A 265 IPVIVQEGIANQELIENNGLGWIVKDVEEAIMKVKNVNEDEYIELVKNVRSFNPILRKGFFTRR 328 (339)
T ss_dssp CCEEEETTCTTTHHHHHHTCEEEESSHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHHTTHHHHH
T ss_pred CCEEEccChhHHHHHHhCCeEEEeCCHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 9999999987 889998889999999999999999864332224555444 23444444443
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.45 E-value=5e-14 Score=128.56 Aligned_cols=201 Identities=11% Similarity=0.083 Sum_probs=126.3
Q ss_pred CCCeeeeCchhhhh------ccCCcEEee-cc-CCCCccccCc--c-----hHHHhhcCCC-CCCCcEEEEE-ec-cccc
Q 023072 1 MGFQVIRLSAATQE------YANSIICNV-HG-VNPKFLEIGK--K-----KKEQQQNGTH-AFAKGAYYIG-KM-VWSK 62 (287)
Q Consensus 1 ~~~~Vi~lS~~~~~------~~~~~i~vi-~g-vd~~~~~~~~--~-----~~~~~~~~~~-~~~~~i~~vG-~~-~~~K 62 (287)
++|.+++.|+.... ++++++.++ |. +|...+.+.. . .......+.. ...+.+++.| |. ...|
T Consensus 166 ~a~~~~~~se~~~~~l~~~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~ 245 (396)
T 3dzc_A 166 LTQYHFAPTDTSRANLLQENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGG 245 (396)
T ss_dssp TCSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTT
T ss_pred hcCEEECCCHHHHHHHHHcCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchh
Confidence 46888898887533 467789998 64 4433222211 0 0001111101 1122344434 53 3457
Q ss_pred CHHHHHHHHHHHHHhcCCeEEEEE-eCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHH
Q 023072 63 GYKELLELLDDHQKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 63 g~~~ll~a~~~l~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~ 138 (287)
++..+++++..+.+.+|++++++. |.++. .+.+++... ...++.+++...+.+ .+|+.||++|.+| | ++ .
T Consensus 246 ~~~~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~-~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G-g~-~ 319 (396)
T 3dzc_A 246 GFERICQALITTAEQHPECQILYPVHLNPNVREPVNKLLK-GVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G-GI-Q 319 (396)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTT-TCTTEEEECCCCHHHHHHHHHHCSEEEESC---S-GG-G
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHc-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c-cH-H
Confidence 899999999999888899998886 64432 233333221 122677777776555 9999999999998 3 33 3
Q ss_pred HHHHhcCCeEEee-cCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHHHhcCCHHHHHHHHHHH
Q 023072 139 AEALAMGKIVVCA-NHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQRHQLSWESATERFLQV 209 (287)
Q Consensus 139 ~EAma~G~PVV~s-~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~~~~~sw~~~~~~~~~~ 209 (287)
+|||+||+|||++ +.++ .+.+.++ .+++++ |++++++++.++++++.. +|+.. ...|.....++++.+.
T Consensus 320 ~EA~a~G~PvV~~~~~~~~~e~v~~G-~~~lv~~d~~~l~~ai~~ll~d~~~~~~m~~~-~~~~~~~~aa~ri~~~ 393 (396)
T 3dzc_A 320 EEAPSLGKPVLVMRETTERPEAVAAG-TVKLVGTNQQQICDALSLLLTDPQAYQAMSQA-HNPYGDGKACQRIADI 393 (396)
T ss_dssp TTGGGGTCCEEECCSSCSCHHHHHHT-SEEECTTCHHHHHHHHHHHHHCHHHHHHHHTS-CCTTCCSCHHHHHHHH
T ss_pred HHHHHcCCCEEEccCCCcchHHHHcC-ceEEcCCCHHHHHHHHHHHHcCHHHHHHHhhc-cCCCcCChHHHHHHHH
Confidence 8999999999999 5566 6677666 567776 899999999999987543 11111 1235445555555544
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.41 E-value=1.6e-13 Score=125.56 Aligned_cols=201 Identities=8% Similarity=-0.002 Sum_probs=128.1
Q ss_pred CCeeeeCchhhhh------ccCCcEEee-c-cCCCCccccCc--chHHHhhcCCCCCCCcEEEEEeccc-ccCHHHHHHH
Q 023072 2 GFQVIRLSAATQE------YANSIICNV-H-GVNPKFLEIGK--KKKEQQQNGTHAFAKGAYYIGKMVW-SKGYKELLEL 70 (287)
Q Consensus 2 ~~~Vi~lS~~~~~------~~~~~i~vi-~-gvd~~~~~~~~--~~~~~~~~~~~~~~~~i~~vG~~~~-~Kg~~~ll~a 70 (287)
+|.+++.|+.... ++++++.++ | ++|...+.... ........ ......+++.||... .|++..++++
T Consensus 170 a~~~~~~se~~~~~l~~~Gi~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l--~~~~~vlv~~~r~~~~~~~l~~ll~a 247 (403)
T 3ot5_A 170 ADIHFSPTKQAKENLLAEGKDPATIFVTGNTAIDALKTTVQKDYHHPILENL--GDNRLILMTAHRRENLGEPMQGMFEA 247 (403)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC--TTCEEEEECCCCHHHHTTHHHHHHHH
T ss_pred cCEEECCCHHHHHHHHHcCCCcccEEEeCCchHHHHHhhhhhhcchHHHHhc--cCCCEEEEEeCcccccCcHHHHHHHH
Confidence 6778888887543 567889999 5 45543332221 11111111 111113444556533 4789999999
Q ss_pred HHHHHHhcCCeEEEEE-eCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHHHHHhcCC
Q 023072 71 LDDHQKELAGLEVDLY-GNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTAEALAMGK 146 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma~G~ 146 (287)
+..+.+.+|++++++. |.++. .+.+++... ...++.+++...+.+ .+|+.||++|.+| |...+||++||+
T Consensus 248 ~~~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~-~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~ 321 (403)
T 3ot5_A 248 VREIVESREDTELVYPMHLNPAVREKAMAILG-GHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGV 321 (403)
T ss_dssp HHHHHHHCTTEEEEEECCSCHHHHHHHHHHHT-TCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTC
T ss_pred HHHHHHhCCCceEEEecCCCHHHHHHHHHHhC-CCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCC
Confidence 9999888899998887 44332 223333221 123677788887655 9999999999887 344489999999
Q ss_pred eEEee-cCCC-ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC--CccHHH---HhcCCHHHHHHHHHHHHh
Q 023072 147 IVVCA-NHPS-NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA--LPTEAQ---RHQLSWESATERFLQVAE 211 (287)
Q Consensus 147 PVV~s-~~~~-~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~--~~~~~~---~~~~sw~~~~~~~~~~~~ 211 (287)
|||++ +.++ .+.+..+ ++++++ |++++++++.++++++.. +++... ....+++++++.+.+.+.
T Consensus 322 PvV~~~~~~~~~e~v~~g-~~~lv~~d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 322 PVLVLRDTTERPEGIEAG-TLKLIGTNKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAIKSHFE 393 (403)
T ss_dssp CEEECCSSCSCHHHHHHT-SEEECCSCHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHHHHHHT
T ss_pred CEEEecCCCcchhheeCC-cEEEcCCCHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHHHHHHhC
Confidence 99999 5566 5666554 788886 999999999999987543 222111 123455566665555544
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.37 E-value=4.6e-12 Score=114.29 Aligned_cols=168 Identities=11% Similarity=0.017 Sum_probs=113.2
Q ss_pred CCcEEee-ccCCCCccccCcchHHHhhcCCCCCCCcEE-EEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHH
Q 023072 17 NSIICNV-HGVNPKFLEIGKKKKEQQQNGTHAFAKGAY-YIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQ 94 (287)
Q Consensus 17 ~~~i~vi-~gvd~~~~~~~~~~~~~~~~~~~~~~~~i~-~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~ 94 (287)
..++.++ +.+.++++........ .....+.++ +.|+....+..+.+++++..+... .++.+++.+...+.+.
T Consensus 152 ~~k~~~~g~pvr~~~~~~~~~~~~-----~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~-~~~~vi~~~G~~~~~~ 225 (365)
T 3s2u_A 152 SDKRLTTGNPVRGELFLDAHARAP-----LTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLE-IRPAIRHQAGRQHAEI 225 (365)
T ss_dssp ---CEECCCCCCGGGCCCTTSSCC-----CTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTT-TCCEEEEECCTTTHHH
T ss_pred cCcEEEECCCCchhhccchhhhcc-----cCCCCcEEEEECCcCCccccchhhHHHHHhcccc-cceEEEEecCcccccc
Confidence 3456666 8888877654332211 011112344 446777777778888888877544 3455554433334577
Q ss_pred HHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC---------ccccccCCCe
Q 023072 95 IQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---------NDFFKQFPNC 165 (287)
Q Consensus 95 l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~---------~e~i~~~~~g 165 (287)
+.+.....+.+++++++.++..++|..||++|.-+ -++|+.|+|++|+|+|....+. .+.+.+...|
T Consensus 226 ~~~~~~~~~~~~~v~~f~~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l~~~G~a 301 (365)
T 3s2u_A 226 TAERYRTVAVEADVAPFISDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFLVRSGAG 301 (365)
T ss_dssp HHHHHHHTTCCCEEESCCSCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHHHTTTSE
T ss_pred ccceecccccccccccchhhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHHHHCCCE
Confidence 77777888888899999998889999999999643 3799999999999999876643 1345555567
Q ss_pred Eeec----CHHHHHHHHHHHHhCCCC--CccHHHH
Q 023072 166 RTYD----DRNGFVEATLKALAEEPA--LPTEAQR 194 (287)
Q Consensus 166 ~l~~----d~~~l~~~i~~ll~~~~~--~~~~~~~ 194 (287)
.+++ |+++|+++|.++++|++. +|+++.+
T Consensus 302 ~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~ 336 (365)
T 3s2u_A 302 RLLPQKSTGAAELAAQLSEVLMHPETLRSMADQAR 336 (365)
T ss_dssp EECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred EEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 6654 789999999999999765 5555554
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.33 E-value=1.9e-12 Score=117.83 Aligned_cols=149 Identities=13% Similarity=0.015 Sum_probs=108.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeC-CcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.+++.|++. .++.+.+.+++..+.+. ++++++++. +.+.+.++ +..-++.+.|.. +..++|..||++|.++
T Consensus 245 vlv~~G~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~g~~~~~~~l~----~~~~~v~~~~~~-~~~~~l~~ad~~v~~~ 316 (412)
T 3otg_A 245 VYLTLGTSS-GGTVEVLRAAIDGLAGL--DADVLVASGPSLDVSGLG----EVPANVRLESWV-PQAALLPHVDLVVHHG 316 (412)
T ss_dssp EEEECTTTT-CSCHHHHHHHHHHHHTS--SSEEEEECCSSCCCTTCC----CCCTTEEEESCC-CHHHHGGGCSEEEESC
T ss_pred EEEEcCCCC-cCcHHHHHHHHHHHHcC--CCEEEEEECCCCChhhhc----cCCCcEEEeCCC-CHHHHHhcCcEEEECC
Confidence 456677775 77888787777777543 567776644 43233332 233477888888 4557999999999765
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--CccH---HHHh
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQRH 195 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~~~---~~~~ 195 (287)
.+.+++|||++|+|+|+...++ .+.+.+...|++++ |+++++++|.++++|+.. .+++ ....
T Consensus 317 ----g~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~ 392 (412)
T 3otg_A 317 ----GSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAA 392 (412)
T ss_dssp ----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhc
Confidence 3589999999999999987654 45666666787764 899999999999998654 2332 3335
Q ss_pred cCCHHHHHHHHHHHHh
Q 023072 196 QLSWESATERFLQVAE 211 (287)
Q Consensus 196 ~~sw~~~~~~~~~~~~ 211 (287)
.++|+++++.+.+++.
T Consensus 393 ~~~~~~~~~~~~~l~~ 408 (412)
T 3otg_A 393 MPGPDEVVRLLPGFAS 408 (412)
T ss_dssp SCCHHHHHTTHHHHHC
T ss_pred CCCHHHHHHHHHHHhc
Confidence 7899999999998875
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.26 E-value=1.2e-11 Score=113.30 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=103.6
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEE-EEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEV-DLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.++++|++. .++.+.+..++..+.+ .+++++ +++|++.+.+.++ .+..++.+.|..++. ++|..||++|..+
T Consensus 235 v~v~~Gs~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~~~~~~l~----~~~~~v~~~~~~~~~-~~l~~ad~~v~~~ 307 (430)
T 2iyf_A 235 VLVSLGSAF-TKQPAFYRECVRAFGN-LPGWHLVLQIGRKVTPAELG----ELPDNVEVHDWVPQL-AILRQADLFVTHA 307 (430)
T ss_dssp EEEECTTTC-C-CHHHHHHHHHHHTT-CTTEEEEEECC---CGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEECC
T ss_pred EEEEcCCCC-CCcHHHHHHHHHHHhc-CCCeEEEEEeCCCCChHHhc----cCCCCeEEEecCCHH-HHhhccCEEEECC
Confidence 466778887 5555555444444432 257787 4679877644432 234477888988877 6999999999854
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--CccH---HHHh
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPTE---AQRH 195 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~~~---~~~~ 195 (287)
...+++|||++|+|+|+...++ .+.+.+...|++++ |+++++++|.++++++.. +++. ....
T Consensus 308 ----G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~ 383 (430)
T 2iyf_A 308 ----GAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQ 383 (430)
T ss_dssp ----CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ----CccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHh
Confidence 2479999999999999998754 34455666787765 889999999999987653 2222 2334
Q ss_pred cCCHHHHHHHHHHHHhc
Q 023072 196 QLSWESATERFLQVAEL 212 (287)
Q Consensus 196 ~~sw~~~~~~~~~~~~~ 212 (287)
.++|+.+++.+.++++.
T Consensus 384 ~~~~~~~~~~i~~~~~~ 400 (430)
T 2iyf_A 384 EGGTRRAADLIEAELPA 400 (430)
T ss_dssp HCHHHHHHHHHHTTSCC
T ss_pred cCcHHHHHHHHHHHhhc
Confidence 67888888888877663
No 35
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.16 E-value=2.8e-11 Score=109.42 Aligned_cols=149 Identities=13% Similarity=0.055 Sum_probs=107.2
Q ss_pred EEEEEecccccCH-HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 52 AYYIGKMVWSKGY-KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 52 i~~vG~~~~~Kg~-~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
++++|+....|+. ..+++++.+. ...|+++++++|++.+.+.+. ....++++.+..++.+ ++..||++|.
T Consensus 222 lv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~~~~-ll~~ad~~v~--- 292 (391)
T 3tsa_A 222 CICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPEHRALLT----DLPDNARIAESVPLNL-FLRTCELVIC--- 292 (391)
T ss_dssp EEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGGGGGGCT----TCCTTEEECCSCCGGG-TGGGCSEEEE---
T ss_pred EEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCcchhhcc----cCCCCEEEeccCCHHH-HHhhCCEEEe---
Confidence 4456887765555 7777777777 777899999998776544332 3344777788876554 7899999995
Q ss_pred CCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec------CHHHHHHHHHHHHhCCCC--CccH---HHH
Q 023072 131 TDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD------DRNGFVEATLKALAEEPA--LPTE---AQR 194 (287)
Q Consensus 131 ~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~------d~~~l~~~i~~ll~~~~~--~~~~---~~~ 194 (287)
++.+.+++|||++|+|+|+....+ .+.+.+...|.+++ |++++++++.++++|+.. .+.+ ...
T Consensus 293 -~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~ 371 (391)
T 3tsa_A 293 -AGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEIT 371 (391)
T ss_dssp -CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 455679999999999999975533 44566666787654 589999999999998654 2222 333
Q ss_pred hcCCHHHHHHHHHHHH
Q 023072 195 HQLSWESATERFLQVA 210 (287)
Q Consensus 195 ~~~sw~~~~~~~~~~~ 210 (287)
...+|+.+++.++++.
T Consensus 372 ~~~~~~~~~~~i~~~~ 387 (391)
T 3tsa_A 372 AMPHPAALVRTLENTA 387 (391)
T ss_dssp TSCCHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5788988888777654
No 36
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.13 E-value=4.8e-10 Score=106.16 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=100.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEE--EEeCC--cCHHHHHHHHHhcCC--ceEEecCCCCHH--HHhhhC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVD--LYGNG--EDFNQIQEAAEKLKI--VVRVYPGRDHAD--LIFHDY 122 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~--i~G~g--~~~~~l~~~~~~~~l--~~~v~g~~~~~~--~~~~~a 122 (287)
.++|.+--...|..+.++++|.++.+..|+..+. ++|.+ .....++ .+.+.|+ ++.|.|..+..+ ..|+.+
T Consensus 441 ~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~g~~~~~~~-~~~~~GI~~Rv~F~g~~p~~e~la~y~~a 519 (631)
T 3q3e_A 441 VVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSNGITHPYVE-RFIKSYLGDSATAHPHSPYHQYLRILHNC 519 (631)
T ss_dssp EEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCCGGGHHHHH-HHHHHHHGGGEEEECCCCHHHHHHHHHTC
T ss_pred eEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCchhhHHHHH-HHHHcCCCccEEEcCCCCHHHHHHHHhcC
Confidence 5666665567899999999999999999987664 35643 3333333 3344444 666678888777 899999
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-cccc-----c-cCCCe-EeecCHHHHHHHHHHHHhCCCC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFF-----K-QFPNC-RTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i-----~-~~~~g-~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
|+++.|+.+.+ |++.+|||+||+|||+...+. ..-+ . -|-.. ++..|.+++++...++.+|++.
T Consensus 520 DIfLDpfpy~G-gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~ 591 (631)
T 3q3e_A 520 DMMVNPFPFGN-TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQE 591 (631)
T ss_dssp SEEECCSSSCC-SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHH
T ss_pred cEEEeCCcccC-ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHH
Confidence 99999986654 999999999999999987654 2222 1 23334 4677999999999999998765
No 37
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.12 E-value=4.3e-11 Score=108.59 Aligned_cols=143 Identities=13% Similarity=-0.036 Sum_probs=89.7
Q ss_pred cEEEEEeccccc----------CHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh
Q 023072 51 GAYYIGKMVWSK----------GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH 120 (287)
Q Consensus 51 ~i~~vG~~~~~K----------g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~ 120 (287)
.++++|++...| .+..+++++..+ ++++++++++.+.+.+. .+.-++++.+..+ ..++|.
T Consensus 230 v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~l~----~~~~~v~~~~~~~-~~~ll~ 299 (398)
T 4fzr_A 230 LCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-----GFEVVVAVSDKLAQTLQ----PLPEGVLAAGQFP-LSAIMP 299 (398)
T ss_dssp EECC----------------CCSHHHHHHHGGGG-----TCEEEECCCC------------CCTTEEEESCCC-HHHHGG
T ss_pred EEEEccCcccccccccccchHHHHHHHHHHHHhC-----CCEEEEEeCCcchhhhc----cCCCcEEEeCcCC-HHHHHh
Confidence 455678886554 455555555433 58888887766544333 3455788888885 346999
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC----C-ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--Cc
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP----S-NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LP 189 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~----~-~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~ 189 (287)
.||++|. .+.+.+++|||++|+|+|+.... + .+.+.+...|++++ |++++++++.++++++.. .+
T Consensus 300 ~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~ 375 (398)
T 4fzr_A 300 ACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNA 375 (398)
T ss_dssp GCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHTTSEEECC-------CHHHHHHHHHHCTHHHHHH
T ss_pred hCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHH
Confidence 9999995 45578999999999999996553 3 45666667887765 789999999999998654 22
Q ss_pred cH---HHHhcCCHHHHHHHHH
Q 023072 190 TE---AQRHQLSWESATERFL 207 (287)
Q Consensus 190 ~~---~~~~~~sw~~~~~~~~ 207 (287)
.+ ......+|+.+++.+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 376 RRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHh
Confidence 22 2235778888877664
No 38
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.04 E-value=2.7e-09 Score=96.86 Aligned_cols=174 Identities=13% Similarity=0.006 Sum_probs=111.6
Q ss_pred CCeeeeCchhhh------hccCCcEEee-cc-CCCCccccC--cchHHHhhcCCCCCCCcEE-EEEec---ccccCHHHH
Q 023072 2 GFQVIRLSAATQ------EYANSIICNV-HG-VNPKFLEIG--KKKKEQQQNGTHAFAKGAY-YIGKM---VWSKGYKEL 67 (287)
Q Consensus 2 ~~~Vi~lS~~~~------~~~~~~i~vi-~g-vd~~~~~~~--~~~~~~~~~~~~~~~~~i~-~vG~~---~~~Kg~~~l 67 (287)
+|.+++.|+... +++++++.++ |. +|...+... .........+ ....+.++ ..|+. ...|++..+
T Consensus 147 a~~~~~~te~~~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lg-l~~~~~iLvt~hr~e~~~~~~~l~~l 225 (385)
T 4hwg_A 147 SDVNITLTEHARRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLS-LTPKQYFLISSHREENVDVKNNLKEL 225 (385)
T ss_dssp CSEEEESSHHHHHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTT-CCTTSEEEEEECCC-----CHHHHHH
T ss_pred hceeecCCHHHHHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcC-CCcCCEEEEEeCCchhcCcHHHHHHH
Confidence 566777777643 3567789888 54 443222110 0000111111 11122344 45553 234788999
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhc-C-----CceEEecCCCCHH--HHhhhCCEEEcCCCCCcchHHHH
Q 023072 68 LELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKL-K-----IVVRVYPGRDHAD--LIFHDYKVFLNPSTTDVVCTTTA 139 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~-----l~~~v~g~~~~~~--~~~~~adv~v~ps~~E~~~~~~~ 139 (287)
++++..+.+.+ ++.+++... + .+++.++++ + .++.+++.+.+.+ .+|+.||++|..| |..+.
T Consensus 226 l~al~~l~~~~-~~~vv~p~~-p---~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~ 295 (385)
T 4hwg_A 226 LNSLQMLIKEY-NFLIIFSTH-P---RTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITE 295 (385)
T ss_dssp HHHHHHHHHHH-CCEEEEEEC-H---HHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHH
T ss_pred HHHHHHHHhcC-CeEEEEECC-h---HHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHH
Confidence 99999997765 777776543 2 345555554 2 2566667776665 8999999999766 45679
Q ss_pred HHHhcCCeEEeecCCC--ccccccCCCeEeec-CHHHHHHHHHHHHhCCCC
Q 023072 140 EALAMGKIVVCANHPS--NDFFKQFPNCRTYD-DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 140 EAma~G~PVV~s~~~~--~e~i~~~~~g~l~~-d~~~l~~~i~~ll~~~~~ 187 (287)
||+++|+|||+..... .+.+..+ ++.++. |.+++++++.++++++..
T Consensus 296 EA~alG~Pvv~~~~~ter~e~v~~G-~~~lv~~d~~~i~~ai~~ll~d~~~ 345 (385)
T 4hwg_A 296 EASILNLPALNIREAHERPEGMDAG-TLIMSGFKAERVLQAVKTITEEHDN 345 (385)
T ss_dssp HHHHTTCCEEECSSSCSCTHHHHHT-CCEECCSSHHHHHHHHHHHHTTCBT
T ss_pred HHHHcCCCEEEcCCCccchhhhhcC-ceEEcCCCHHHHHHHHHHHHhChHH
Confidence 9999999999987743 5666555 567775 999999999999998765
No 39
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.01 E-value=9.4e-10 Score=87.93 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=87.9
Q ss_pred cEEEEEecc---cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHh--hhCCEE
Q 023072 51 GAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDYKVF 125 (287)
Q Consensus 51 ~i~~vG~~~---~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~--~~adv~ 125 (287)
.++++|++. +.|++..+++++..+ +.++++++++...+ .++.++++.+..++. +++ ..||++
T Consensus 24 vlv~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~-------~~~~~v~~~~~~~~~-~~l~~~~ad~~ 90 (170)
T 2o6l_A 24 VVFSLGSMVSNMTEERANVIASALAQI-----PQKVLWRFDGNKPD-------TLGLNTRLYKWIPQN-DLLGHPKTRAF 90 (170)
T ss_dssp EEEECCSCCTTCCHHHHHHHHHHHTTS-----SSEEEEECCSSCCT-------TCCTTEEEESSCCHH-HHHTSTTEEEE
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHhC-----CCeEEEEECCcCcc-------cCCCcEEEecCCCHH-HHhcCCCcCEE
Confidence 566788875 667788888887543 36777776554321 234478888988874 466 889999
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCC
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 185 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~ 185 (287)
|.. +.+.+++|||++|+|+|+....+ .+.+.+...|+.++ +.++++++|.++++++
T Consensus 91 I~~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 155 (170)
T 2o6l_A 91 ITH----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDP 155 (170)
T ss_dssp EEC----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCH
T ss_pred EEc----CCccHHHHHHHcCCCEEeccchhhHHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCH
Confidence 973 44699999999999999998853 44566666787765 8899999999999874
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.93 E-value=3.5e-09 Score=95.36 Aligned_cols=120 Identities=11% Similarity=0.016 Sum_probs=87.1
Q ss_pred cEEEEEecccc-------cCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCC
Q 023072 51 GAYYIGKMVWS-------KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYK 123 (287)
Q Consensus 51 ~i~~vG~~~~~-------Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~ad 123 (287)
.++++|++... +.+..+++++..+ ++++++++.+.+.+.++ .+..++.+ +..++ .++|..||
T Consensus 213 v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-----~~~~~~~~g~~~~~~l~----~~~~~v~~-~~~~~-~~~l~~~d 281 (384)
T 2p6p_A 213 VLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-----DVELIVAAPDTVAEALR----AEVPQARV-GWTPL-DVVAPTCD 281 (384)
T ss_dssp EEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-----TCEEEEECCHHHHHHHH----HHCTTSEE-ECCCH-HHHGGGCS
T ss_pred EEEECCCCCccccccccHHHHHHHHHHHhcC-----CcEEEEEeCCCCHHhhC----CCCCceEE-cCCCH-HHHHhhCC
Confidence 46677888765 5677777777543 57888875543333332 34447888 88865 46999999
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 185 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~ 185 (287)
++|.. +.+.+++|||++|+|+|+....+ .+.+.+...|+.++ +.++++++|.++++++
T Consensus 282 ~~v~~----~G~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~ 348 (384)
T 2p6p_A 282 LLVHH----AGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSCQELQAKD 348 (384)
T ss_dssp EEEEC----SCTTHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHCH
T ss_pred EEEeC----CcHHHHHHHHHhCCCEEEccCcccchHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcCH
Confidence 99985 34578999999999999998743 33455555777664 7999999999999874
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.93 E-value=8e-10 Score=100.24 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=98.6
Q ss_pred cEEEEEecccc-cCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWS-KGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~-Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.++++|++... ++.+.+.+++..+.+. +++++++|++.+.+.+. .+..++++.+..+ ..++|..||++|.
T Consensus 235 v~v~~G~~~~~~~~~~~~~~~~~~l~~~--~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~-~~~ll~~ad~~v~-- 305 (398)
T 3oti_A 235 VAITMGTIELQAFGIGAVEPIIAAAGEV--DADFVLALGDLDISPLG----TLPRNVRAVGWTP-LHTLLRTCTAVVH-- 305 (398)
T ss_dssp EEECCTTTHHHHHCGGGHHHHHHHHHTS--SSEEEEECTTSCCGGGC----SCCTTEEEESSCC-HHHHHTTCSEEEE--
T ss_pred EEEEcCCCccccCcHHHHHHHHHHHHcC--CCEEEEEECCcChhhhc----cCCCcEEEEccCC-HHHHHhhCCEEEE--
Confidence 34556888655 4666666666555433 68899998776543332 3344788888884 4469999999995
Q ss_pred CCCcchHHHHHHHhcCCeEEee----cCCC-c--cccccCCCeEeec----CHHHHHHHHHHHHhCCCC--Cc---cHHH
Q 023072 130 TTDVVCTTTAEALAMGKIVVCA----NHPS-N--DFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LP---TEAQ 193 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s----~~~~-~--e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~---~~~~ 193 (287)
.+.+.+++|||++|+|+|+. +.++ . +.+.+...|+.++ +.+.++ ++++|+.. .+ ++..
T Consensus 306 --~~G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~ 379 (398)
T 3oti_A 306 --HGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEM 379 (398)
T ss_dssp --CCCHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHH
Confidence 45568999999999999994 4444 5 6777767787775 455554 77777554 22 2233
Q ss_pred HhcCCHHHHHHHHHHHH
Q 023072 194 RHQLSWESATERFLQVA 210 (287)
Q Consensus 194 ~~~~sw~~~~~~~~~~~ 210 (287)
....+|+.+++.+++++
T Consensus 380 ~~~~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 380 VALPTPAETVRRIVERI 396 (398)
T ss_dssp HTSCCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHh
Confidence 45789999998887765
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.86 E-value=2.5e-09 Score=98.41 Aligned_cols=147 Identities=11% Similarity=-0.012 Sum_probs=101.2
Q ss_pred cEEEEEeccc-----ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEE
Q 023072 51 GAYYIGKMVW-----SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVF 125 (287)
Q Consensus 51 ~i~~vG~~~~-----~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~ 125 (287)
.++++|++.. .+.+..+++++..+ ++++++.+.+.+.+.+. .+..++++.+.+++ .++|..||++
T Consensus 270 v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~~l~----~~~~~v~~~~~~~~-~~ll~~ad~~ 339 (441)
T 2yjn_A 270 VCLTLGISSRENSIGQVSIEELLGAVGDV-----DAEIIATFDAQQLEGVA----NIPDNVRTVGFVPM-HALLPTCAAT 339 (441)
T ss_dssp EEEEC----------CCSTTTTHHHHHTS-----SSEEEECCCTTTTSSCS----SCCSSEEECCSCCH-HHHGGGCSEE
T ss_pred EEEECCCCcccccChHHHHHHHHHHHHcC-----CCEEEEEECCcchhhhc----cCCCCEEEecCCCH-HHHHhhCCEE
Confidence 4566788765 48888888888643 57888876555433221 23346777888887 4689999999
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--Ccc---H
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LPT---E 191 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~~---~ 191 (287)
|.. +.+.+++|||++|+|+|+....+ .+.+.+...|+.++ ++++++++|.++++++.. ++. +
T Consensus 340 V~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 415 (441)
T 2yjn_A 340 VHH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRD 415 (441)
T ss_dssp EEC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred EEC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 973 44689999999999999998744 33455555777664 889999999999998543 222 2
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 023072 192 AQRHQLSWESATERFLQVAE 211 (287)
Q Consensus 192 ~~~~~~sw~~~~~~~~~~~~ 211 (287)
.......++.+++.+++++.
T Consensus 416 ~~~~~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 416 DMLAEPSPAEVVGICEELAA 435 (441)
T ss_dssp HHHTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 23356788888888777654
No 43
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.70 E-value=3.8e-08 Score=88.71 Aligned_cols=147 Identities=12% Similarity=0.020 Sum_probs=98.2
Q ss_pred cEEEEEeccccc--CHHHHHHHHHHHHHhcCCeEEEE-EeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEc
Q 023072 51 GAYYIGKMVWSK--GYKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLN 127 (287)
Q Consensus 51 ~i~~vG~~~~~K--g~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ 127 (287)
.+++.|+....+ .+..+++++. ..+ +++++ +|.+.+.+.+. +...++++.+..++. ++|..||++|.
T Consensus 234 v~v~~G~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~ll~~ad~~v~ 303 (402)
T 3ia7_A 234 LLVSLGNQFNEHPEFFRACAQAFA----DTP-WHVVMAIGGFLDPAVLG----PLPPNVEAHQWIPFH-SVLAHARACLT 303 (402)
T ss_dssp EEEECCSCSSCCHHHHHHHHHHHT----TSS-CEEEEECCTTSCGGGGC----SCCTTEEEESCCCHH-HHHTTEEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHh----cCC-cEEEEEeCCcCChhhhC----CCCCcEEEecCCCHH-HHHhhCCEEEE
Confidence 355667776544 2333333332 223 66665 47765544333 234478888988877 79999999997
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecC-C----C-ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--Cc---cHH
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANH-P----S-NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LP---TEA 192 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~-~----~-~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~---~~~ 192 (287)
.+ -..+++|||++|+|+|+... . . .+.+.+...|..++ +++++++++.++++|+.. .+ ++.
T Consensus 304 ~~----G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~ 379 (402)
T 3ia7_A 304 HG----TTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRD 379 (402)
T ss_dssp CC----CHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CC----CHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 54 24788999999999997655 3 2 44566666777664 899999999999998643 22 222
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 023072 193 QRHQLSWESATERFLQVAE 211 (287)
Q Consensus 193 ~~~~~sw~~~~~~~~~~~~ 211 (287)
.....+++++++.+.+++.
T Consensus 380 ~~~~~~~~~~~~~i~~~~~ 398 (402)
T 3ia7_A 380 ILSSGGPARAADEVEAYLG 398 (402)
T ss_dssp HHTSCHHHHHHHHHHHHHH
T ss_pred HhhCChHHHHHHHHHHHHh
Confidence 3346788888888877764
No 44
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.61 E-value=1.1e-07 Score=86.39 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=94.5
Q ss_pred EEEEEecccccC--HHHHHHHHHHHHHhcCCeEEEE-EeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcC
Q 023072 52 AYYIGKMVWSKG--YKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 128 (287)
Q Consensus 52 i~~vG~~~~~Kg--~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~p 128 (287)
+++.|+.....+ +..+++++ ...+ +++++ +|.+.+.+.+. .+..++++.+..++. ++|..||++|..
T Consensus 251 ~v~~Gs~~~~~~~~~~~~~~al----~~~~-~~~v~~~g~~~~~~~l~----~~~~~v~~~~~~~~~-~ll~~ad~~v~~ 320 (415)
T 3rsc_A 251 LVSLGTTFNDRPGFFRDCARAF----DGQP-WHVVMTLGGQVDPAALG----DLPPNVEAHRWVPHV-KVLEQATVCVTH 320 (415)
T ss_dssp EEECTTTSCCCHHHHHHHHHHH----TTSS-CEEEEECTTTSCGGGGC----CCCTTEEEESCCCHH-HHHHHEEEEEES
T ss_pred EEECCCCCCChHHHHHHHHHHH----hcCC-cEEEEEeCCCCChHHhc----CCCCcEEEEecCCHH-HHHhhCCEEEEC
Confidence 445566643321 33333333 2333 77777 47765544333 234478888888877 699999999975
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCCC--Cc---cHHHH
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPA--LP---TEAQR 194 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~--~~---~~~~~ 194 (287)
+ -..+++|||++|+|+|+....+ .+.+.+...|..++ +++++++++.++++++.. .+ ++...
T Consensus 321 ~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~ 396 (415)
T 3rsc_A 321 G----GMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVR 396 (415)
T ss_dssp C----CHHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3 3478899999999999965433 34555555676654 899999999999998543 11 12223
Q ss_pred hcCCHHHHHHHHHHHHh
Q 023072 195 HQLSWESATERFLQVAE 211 (287)
Q Consensus 195 ~~~sw~~~~~~~~~~~~ 211 (287)
....++++++.+.+++.
T Consensus 397 ~~~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 397 RAGGAARAADAVEAYLA 413 (415)
T ss_dssp HSCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhh
Confidence 45677777777766553
No 45
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=98.53 E-value=3.5e-07 Score=83.37 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=83.4
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCCeEEEE-EeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAGLEVDL-YGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
+++.|+.. .+..+.+.+++..+.. .++++++ +|.+.+.+.+. .+..++.+.+..++. ++|..||++|..
T Consensus 259 ~v~~Gs~~-~~~~~~~~~~~~al~~--~~~~~~~~~g~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~~~d~~v~~-- 328 (424)
T 2iya_A 259 LIALGSAF-TDHLDFYRTCLSAVDG--LDWHVVLSVGRFVDPADLG----EVPPNVEVHQWVPQL-DILTKASAFITH-- 328 (424)
T ss_dssp EEECCSSS-CCCHHHHHHHHHHHTT--CSSEEEEECCTTSCGGGGC----SCCTTEEEESSCCHH-HHHTTCSEEEEC--
T ss_pred EEEcCCCC-cchHHHHHHHHHHHhc--CCcEEEEEECCcCChHHhc----cCCCCeEEecCCCHH-HHHhhCCEEEEC--
Confidence 44567765 3333333344444422 4577754 58766543332 234477888888877 699999999863
Q ss_pred CCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCC
Q 023072 131 TDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEP 186 (287)
Q Consensus 131 ~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~ 186 (287)
+-..+++|||++|+|+|+....+ .+.+.+...|+.++ +.++++++|.++++++.
T Consensus 329 --~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 391 (424)
T 2iya_A 329 --AGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPG 391 (424)
T ss_dssp --CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHH
T ss_pred --CchhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHH
Confidence 33589999999999999998743 33455555676654 89999999999998753
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.35 E-value=6.1e-06 Score=80.63 Aligned_cols=136 Identities=13% Similarity=-0.010 Sum_probs=104.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCc-CHHHHHHHHHhcCC---ceEEecCCCCHH--HHhhhCCE
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGE-DFNQIQEAAEKLKI---VVRVYPGRDHAD--LIFHDYKV 124 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~l---~~~v~g~~~~~~--~~~~~adv 124 (287)
.|+|.+--...|=-+.++++|.++.+..|+..|++..... ....+++.+++.|+ ++.|.+..+..+ ..|+.+|+
T Consensus 523 ~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~Di 602 (723)
T 4gyw_A 523 AIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLADV 602 (723)
T ss_dssp SEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGCSE
T ss_pred CEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCCeE
Confidence 4777665567798899999999999999999999986544 35678888888887 466668777766 88999999
Q ss_pred EEcCCCCCcchHHHHHHHhcCCeEEeecCCC------cccccc-CCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 125 FLNPSTTDVVCTTTAEALAMGKIVVCANHPS------NDFFKQ-FPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~------~e~i~~-~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
++-|--+ +-++|.+||+.||+|||+-.... ..++.. +-.-++..|.++.++...++.+|++.
T Consensus 603 ~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~ 671 (723)
T 4gyw_A 603 CLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEY 671 (723)
T ss_dssp EECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHH
T ss_pred EeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHH
Confidence 9997555 55899999999999999976422 112222 11225667999999999999888543
No 47
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=98.33 E-value=2.6e-06 Score=82.80 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=92.0
Q ss_pred cEEEEEecccccCHHHH-HHHHHHHHH--hcC-----CeEEEEEeCCcC--HHH------HHHHHHhc------CC--ce
Q 023072 51 GAYYIGKMVWSKGYKEL-LELLDDHQK--ELA-----GLEVDLYGNGED--FNQ------IQEAAEKL------KI--VV 106 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~l-l~a~~~l~~--~~~-----~~~l~i~G~g~~--~~~------l~~~~~~~------~l--~~ 106 (287)
.++++.|+..+|+.+.+ +..+..+.+ ..| +.++++.|.+.. ... +.++++.+ +. .+
T Consensus 552 ~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKV 631 (824)
T 2gj4_A 552 FDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRV 631 (824)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEE
T ss_pred eEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEE
Confidence 47788899999999997 777777742 333 578999998763 222 45555544 22 45
Q ss_pred EEecCCCCHH--HHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeEEeecCCCc-cccc--cCCCeEeec-CHHHH
Q 023072 107 RVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-DFFK--QFPNCRTYD-DRNGF 174 (287)
Q Consensus 107 ~v~g~~~~~~--~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PVV~s~~~~~-e~i~--~~~~g~l~~-d~~~l 174 (287)
.|+..++-.- .++..||++++||+ .|+.|+.-+=||.-|++.|++-.|.+ |+.. ...||+++. ..+++
T Consensus 632 vFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGanvEi~e~vG~~Ngf~FG~~~~ev 707 (824)
T 2gj4_A 632 IFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDV 707 (824)
T ss_dssp EEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHH
T ss_pred EEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCccchhhhccCCCCEEEeCCcHHHH
Confidence 5566654333 99999999999999 89999999999999999999887773 4432 346899997 66665
No 48
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.31 E-value=1.7e-06 Score=83.76 Aligned_cols=161 Identities=12% Similarity=-0.003 Sum_probs=108.8
Q ss_pred cEEEEEecccccCHHH-HHHHHHHHHH--hc-----CCeEEEEEeCCcC--HHH------HHHHHH------hcCC--ce
Q 023072 51 GAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLKI--VV 106 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~l--~~ 106 (287)
.++++.|+..+|+.+. ++..+..+.+ .. .++++++.|.+.. ... +.+.++ +++. .+
T Consensus 528 ~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKV 607 (796)
T 1l5w_A 528 FDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKV 607 (796)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEE
T ss_pred eEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEE
Confidence 4778889999999999 8888777754 12 2588999998763 222 444554 4444 45
Q ss_pred EEecCCCCH--HHHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-CHHHHHHHH
Q 023072 107 RVYPGRDHA--DLIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-DRNGFVEAT 178 (287)
Q Consensus 107 ~v~g~~~~~--~~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d~~~l~~~i 178 (287)
.|+..++-. +.++..||++++||+ .|+.|+.-+=||.-|++.|.+-.|. .|+... ..||+++. +.+++.+.-
T Consensus 608 vfl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~ 687 (796)
T 1l5w_A 608 VFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAIL 687 (796)
T ss_dssp EECSSCCHHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCGGGSEECSCCHHHHHHHH
T ss_pred EEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhccCCCcEEEecCCHHHHHHHH
Confidence 555555433 399999999999999 8999999999999999999887777 443322 35899997 767765321
Q ss_pred HH------HHhCCCCCccH----HHHhcCCHHHHHHHHHHHHhcc
Q 023072 179 LK------ALAEEPALPTE----AQRHQLSWESATERFLQVAELD 213 (287)
Q Consensus 179 ~~------ll~~~~~~~~~----~~~~~~sw~~~~~~~~~~~~~~ 213 (287)
.. ...+.+. +.+ .....|||+.. +.+.++|+..
T Consensus 688 ~~~y~a~~~y~~~~~-~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 730 (796)
T 1l5w_A 688 AKGYDPVKWRKKDKV-LDAVLKELESGKYSDGDK-HAFDQMLHSI 730 (796)
T ss_dssp HHCCCHHHHHHHCHH-HHHHHHHHHHTTTTTTCT-TTTHHHHHHT
T ss_pred HcccCHHHHhhcCHH-HHHHHHHHHcCCCCCCcH-HHHHHHHHHH
Confidence 11 1111111 111 12247888775 6688888754
No 49
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.31 E-value=7e-07 Score=81.30 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=82.0
Q ss_pred cEEEEEec-ccccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcC
Q 023072 51 GAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~-~~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~p 128 (287)
.+++.|++ ...+..+.+++++..+ +.+++++ |.+... . ..+.-++.+.+..++. ++|..||++|..
T Consensus 241 v~v~~Gs~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~~--~----~~~~~~v~~~~~~~~~-~~l~~~d~~v~~ 308 (415)
T 1iir_A 241 VYLGFGSLGAPADAVRVAIDAIRAH-----GRRVILSRGWADLV--L----PDDGADCFAIGEVNHQ-VLFGRVAAVIHH 308 (415)
T ss_dssp EEEECC---CCHHHHHHHHHHHHHT-----TCCEEECTTCTTCC--C----SSCGGGEEECSSCCHH-HHGGGSSEEEEC
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHC-----CCeEEEEeCCCccc--c----cCCCCCEEEeCcCChH-HHHhhCCEEEeC
Confidence 45667888 4778888888888655 2455555 765431 1 1222367777888875 588999999974
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 185 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~ 185 (287)
+-..+++|||++|+|+|+....+ .+.+.+...|+.++ +.++++++|.++ +++
T Consensus 309 ----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~ 369 (415)
T 1iir_A 309 ----GGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTP 369 (415)
T ss_dssp ----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSH
T ss_pred ----CChhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCH
Confidence 33479999999999999997744 23455555676654 899999999999 763
No 50
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.28 E-value=4.2e-06 Score=81.11 Aligned_cols=160 Identities=13% Similarity=0.015 Sum_probs=108.6
Q ss_pred cEEEEEecccccCHHH-HHHHHHHHHH--hc-----CCeEEEEEeCCcC--HHH------HHHHHH------hcCC--ce
Q 023072 51 GAYYIGKMVWSKGYKE-LLELLDDHQK--EL-----AGLEVDLYGNGED--FNQ------IQEAAE------KLKI--VV 106 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~-ll~a~~~l~~--~~-----~~~~l~i~G~g~~--~~~------l~~~~~------~~~l--~~ 106 (287)
.++++.|+..+|+.+. ++..+..+.+ .. .++++++.|.+.. ... +.+.++ +++. .+
T Consensus 518 ~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKV 597 (796)
T 2c4m_A 518 FDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKV 597 (796)
T ss_dssp EEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEE
T ss_pred EEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEE
Confidence 4778889999999999 8888887764 23 2588999998763 222 455555 4554 55
Q ss_pred EEecCCCCHH--HHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec----CHHHHH
Q 023072 107 RVYPGRDHAD--LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD----DRNGFV 175 (287)
Q Consensus 107 ~v~g~~~~~~--~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~----d~~~l~ 175 (287)
.|+..++-.- .++..||++++||+ .|+.|+.-+=||.-|++.|.+-.|. .|+... ..||+++. ++.++.
T Consensus 598 vFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~vG~~NgF~FG~~~~ev~~l~ 677 (796)
T 2c4m_A 598 VFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALR 677 (796)
T ss_dssp EEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHHHCGGGSEEESCCTTTHHHHH
T ss_pred EEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhhcCCCcEEEecCchhhHHHHH
Confidence 5566654333 99999999999999 8999999999999999999887777 443322 35899986 444443
Q ss_pred HH---HHHHHhCCCCCccHHH----HhcCCHHHHHHHHHHHHhcc
Q 023072 176 EA---TLKALAEEPALPTEAQ----RHQLSWESATERFLQVAELD 213 (287)
Q Consensus 176 ~~---i~~ll~~~~~~~~~~~----~~~~sw~~~~~~~~~~~~~~ 213 (287)
.. ....-.++ . +.+.. ...|+|+.. +.+.++|+..
T Consensus 678 ~~y~a~~~y~~~~-~-~~~vvd~~~~g~fs~~~~-~~y~~Ly~~L 719 (796)
T 2c4m_A 678 ESYKPYELYETVP-G-LKRALDALDNGTLNDNNS-GLFYDLKHSL 719 (796)
T ss_dssp HTCCHHHHHHHST-T-HHHHHHTTTSSSSCCTTC-CHHHHHHHHH
T ss_pred HhhChHHHhhcCH-H-HHHHHHHHHcCCCCCCCH-HHHHHHHHHH
Confidence 31 11111222 1 21111 147888776 6688888754
No 51
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=98.08 E-value=1.6e-06 Score=78.95 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=81.3
Q ss_pred cEEEEEecc---cccCHHHHHHHHHHHHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEE
Q 023072 51 GAYYIGKMV---WSKGYKELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFL 126 (287)
Q Consensus 51 ~i~~vG~~~---~~Kg~~~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v 126 (287)
.+++.|++. ..+.+..+++++..+ +++++++ |.+.. + . ..+..++.+.+..++. ++|..||++|
T Consensus 240 v~v~~Gs~~~~~~~~~~~~~~~al~~~-----~~~~v~~~g~~~~-~-~----~~~~~~v~~~~~~~~~-~ll~~~d~~v 307 (416)
T 1rrv_A 240 VHIGFGSSSGRGIADAAKVAVEAIRAQ-----GRRVILSRGWTEL-V-L----PDDRDDCFAIDEVNFQ-ALFRRVAAVI 307 (416)
T ss_dssp EEECCTTCCSHHHHHHHHHHHHHHHHT-----TCCEEEECTTTTC-C-C----SCCCTTEEEESSCCHH-HHGGGSSEEE
T ss_pred EEEecCCCCccChHHHHHHHHHHHHHC-----CCeEEEEeCCccc-c-c----cCCCCCEEEeccCChH-HHhccCCEEE
Confidence 344567764 456677777777654 3566665 76542 1 1 2233467778888754 5899999999
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCC
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEE 185 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~ 185 (287)
. .+-..+++||+++|+|+|+....+ .+.+.+...|+.++ +.++++++|.++ .++
T Consensus 308 ~----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~ 370 (416)
T 1rrv_A 308 H----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAP 370 (416)
T ss_dssp E----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSH
T ss_pred e----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCH
Confidence 7 344579999999999999987643 23444445676553 889999999999 764
No 52
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.03 E-value=2e-06 Score=77.37 Aligned_cols=122 Identities=18% Similarity=0.123 Sum_probs=75.8
Q ss_pred EEEeccccc-CHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCC
Q 023072 54 YIGKMVWSK-GYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD 132 (287)
Q Consensus 54 ~vG~~~~~K-g~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E 132 (287)
..|++...+ +...+.+++..+.+ .+..+++.+.+.+.+.. ..+.-++.+.+..++.+ +|..+|+||. .
T Consensus 243 s~Gs~~~~~~~~~~~~~~~~~l~~--~~~~~v~~~~~~~~~~~----~~~~~~v~~~~~~p~~~-lL~~~~~~v~----h 311 (400)
T 4amg_A 243 TLGSIDALSGGIAKLAPLFSEVAD--VDAEFVLTLGGGDLALL----GELPANVRVVEWIPLGA-LLETCDAIIH----H 311 (400)
T ss_dssp CCCSCC--CCSSSTTHHHHHHGGG--SSSEEEEECCTTCCCCC----CCCCTTEEEECCCCHHH-HHTTCSEEEE----C
T ss_pred eCCcccccCccHHHHHHHHHHhhc--cCceEEEEecCcccccc----ccCCCCEEEEeecCHHH-Hhhhhhheec----c
Confidence 356665444 33444444544432 35666666544332211 12334677778887655 8999999985 4
Q ss_pred cchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 133 VVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 133 ~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
+-..+++|||++|+|+|+....+ .+.+.+...|+..++.+..+++|.++++|+.
T Consensus 312 ~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G~g~~l~~~~~~~~al~~lL~d~~ 370 (400)
T 4amg_A 312 GGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDAEAGSLGAEQCRRLLDDAG 370 (400)
T ss_dssp CCHHHHHHHHHHTCCEEECCC---CHHHHHHHHHHTSEEECCTTTCSHHHHHHHHHCHH
T ss_pred CCccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCCCEEEcCCCCchHHHHHHHHcCHH
Confidence 45678999999999999976644 2344444467777766667889999998753
No 53
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.98 E-value=1e-05 Score=73.31 Aligned_cols=145 Identities=14% Similarity=0.027 Sum_probs=92.7
Q ss_pred cEEEEEecc-cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMV-WSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~-~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.++..|++. +.+.+..+++++..+ ++++++.+...+.+.. +..-++.+.+..++ .+++..+|++|..
T Consensus 224 Vlv~~Gs~~~~~~~~~~~~~al~~~-----~~~vv~~~g~~~~~~~-----~~~~~v~~~~~~~~-~~ll~~~d~~v~~- 291 (404)
T 3h4t_A 224 VYVGFGSGPAPAEAARVAIEAVRAQ-----GRRVVLSSGWAGLGRI-----DEGDDCLVVGEVNH-QVLFGRVAAVVHH- 291 (404)
T ss_dssp EEECCTTSCCCTTHHHHHHHHHHHT-----TCCEEEECTTTTCCCS-----SCCTTEEEESSCCH-HHHGGGSSEEEEC-
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhC-----CCEEEEEeCCcccccc-----cCCCCEEEecCCCH-HHHHhhCcEEEEC-
Confidence 345567776 566677777777654 4666666433221111 12347777888877 4599999999863
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCCCeEeec----CHHHHHHHHHHHHhCCCCC-ccHHHHhc---
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFPNCRTYD----DRNGFVEATLKALAEEPAL-PTEAQRHQ--- 196 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~~g~l~~----d~~~l~~~i~~ll~~~~~~-~~~~~~~~--- 196 (287)
+-..++.||+++|+|+|+....+ .+.+.....|...+ +.+++.+++.++++ +..+ ...+..+.
T Consensus 292 ---gG~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~~~~ 367 (404)
T 3h4t_A 292 ---GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGTIRT 367 (404)
T ss_dssp ---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTTCCC
T ss_pred ---CcHHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHhh
Confidence 33478999999999999987654 22344444665543 89999999999997 4321 11111122
Q ss_pred CCHHHHHHHHHHHHh
Q 023072 197 LSWESATERFLQVAE 211 (287)
Q Consensus 197 ~sw~~~~~~~~~~~~ 211 (287)
-.++.+++.+++.+.
T Consensus 368 ~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 368 DGTTVAAKLLLEAIS 382 (404)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 356667776666665
No 54
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=97.69 E-value=9.5e-05 Score=63.87 Aligned_cols=92 Identities=9% Similarity=0.028 Sum_probs=64.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps 129 (287)
.++++|..+...-...+++++.. . .. -.+|.|.+.. .+++++...+.+ ++++++..++..++|..||+.|.+
T Consensus 160 ILv~~GG~d~~~l~~~vl~~L~~---~-~~-i~vv~G~~~~~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~- 232 (282)
T 3hbm_A 160 FFICMGGTDIKNLSLQIASELPK---T-KI-ISIATSSSNPNLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIIS- 232 (282)
T ss_dssp EEEECCSCCTTCHHHHHHHHSCT---T-SC-EEEEECTTCTTHHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEE-
T ss_pred EEEEECCCchhhHHHHHHHHhhc---C-CC-EEEEECCCchHHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEEC-
Confidence 45677776544433444554432 2 22 2344577654 677777766554 788889998888999999999983
Q ss_pred CCCcchHHHHHHHhcCCeEEeecC
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
-|+|+.|++++|+|.|.-..
T Consensus 233 ----gG~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 233 ----ASSLVNEALLLKANFKAICY 252 (282)
T ss_dssp ----SSHHHHHHHHTTCCEEEECC
T ss_pred ----CcHHHHHHHHcCCCEEEEeC
Confidence 25899999999999998754
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=96.50 E-value=0.018 Score=52.87 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEeec----C
Q 023072 103 KIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----D 170 (287)
Q Consensus 103 ~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~~----d 170 (287)
+.++.+.+..++.+ +|. .+|+||. -+-..+++||+++|+|+|+-...+ ...+.+. ..|...+ +
T Consensus 324 ~~~~~v~~w~pq~~-vL~h~~~~~fvt----h~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~~~~~~ 398 (456)
T 2c1x_A 324 RGYGMVVPWAPQAE-VLAHEAVGAFVT----HCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398 (456)
T ss_dssp TTTEEEESCCCHHH-HHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECGGGSCC
T ss_pred CCceEEecCCCHHH-HhcCCcCCEEEe----cCCcchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEecCCCcC
Confidence 34677778887765 777 5677765 455789999999999999998754 2344444 4565553 7
Q ss_pred HHHHHHHHHHHHhCC
Q 023072 171 RNGFVEATLKALAEE 185 (287)
Q Consensus 171 ~~~l~~~i~~ll~~~ 185 (287)
.+++.+++.++++++
T Consensus 399 ~~~l~~~i~~ll~~~ 413 (456)
T 2c1x_A 399 KSGLMSCFDQILSQE 413 (456)
T ss_dssp HHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999874
No 56
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=96.50 E-value=0.0061 Score=53.48 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred EEEEEe-cccccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcC----CceEE-ecCCCCHH--HHhhh
Q 023072 52 AYYIGK-MVWSKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLK----IVVRV-YPGRDHAD--LIFHD 121 (287)
Q Consensus 52 i~~vG~-~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~----l~~~v-~g~~~~~~--~~~~~ 121 (287)
++..|. ..+.|.+. .+.+++..+.+. +++++++|...+.+..++..+..+ .++.. .|..+-.+ .+++.
T Consensus 184 ~l~pga~~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali~~ 261 (348)
T 1psw_A 184 GFCPGAEFGPAKRWPHYHYAELAKQLIDE--GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAA 261 (348)
T ss_dssp EEECCCTTCGGGSCCHHHHHHHHHHHHHT--TCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHT
T ss_pred EEECCCCccccCCCCHHHHHHHHHHHHHC--CCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHHHh
Confidence 344554 44667665 788888877654 789999988776555555544332 13333 36555455 99999
Q ss_pred CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 122 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 122 adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
||++|-.. + |..-+ |.|+|+|+|+-=.
T Consensus 262 a~l~I~~D---s-g~~Hl-Aaa~g~P~v~lfg 288 (348)
T 1psw_A 262 CKAIVTND---S-GLMHV-AAALNRPLVALYG 288 (348)
T ss_dssp SSEEEEES---S-HHHHH-HHHTTCCEEEEES
T ss_pred CCEEEecC---C-HHHHH-HHHcCCCEEEEEC
Confidence 99999854 3 33334 9999999998643
No 57
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=96.48 E-value=0.03 Score=51.48 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=58.0
Q ss_pred hcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccccC-CCeEeec----C
Q 023072 101 KLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQF-PNCRTYD----D 170 (287)
Q Consensus 101 ~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~-~~g~l~~----d 170 (287)
+..-++.+.+..++. .++..+++-++-+ -+--.+++||+++|+|+|+-...+ ...+.+. ..|...+ +
T Consensus 324 ~~~~~~~vv~w~Pq~-~vL~h~~v~~fvt--H~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g~Gv~l~~~~~~ 400 (454)
T 3hbf_A 324 RTKTKGKIVAWAPQV-EILKHSSVGVFLT--HSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLT 400 (454)
T ss_dssp HTTTTEEEESSCCHH-HHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSCSEEECGGGSCC
T ss_pred hcCCceEEEeeCCHH-HHHhhcCcCeEEe--cCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhhCeeEEecCCCCC
Confidence 334467778888875 5899999544322 344578999999999999987744 2244442 4665543 8
Q ss_pred HHHHHHHHHHHHhC
Q 023072 171 RNGFVEATLKALAE 184 (287)
Q Consensus 171 ~~~l~~~i~~ll~~ 184 (287)
.+++.+++.+++.+
T Consensus 401 ~~~l~~av~~ll~~ 414 (454)
T 3hbf_A 401 KESIKKALELTMSS 414 (454)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999999976
No 58
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.34 E-value=0.0047 Score=51.25 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=38.2
Q ss_pred CceEEecCCCCHHHHhh-hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 104 IVVRVYPGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 104 l~~~v~g~~~~~~~~~~-~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
.++.++++.++...+|. .||++|. -+-..+++|++++|+|.|.-..+
T Consensus 114 ~~v~v~~f~~~m~~~l~~~AdlvIs----haGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 114 LKVIGFDFSTKMQSIIRDYSDLVIS----HAGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp SEEEECCSSSSHHHHHHHHCSCEEE----SSCHHHHHHHHHTTCCCCEECCS
T ss_pred ceEEEeeccchHHHHHHhcCCEEEE----CCcHHHHHHHHHhCCCEEEEcCc
Confidence 34556677788778999 9999986 35578999999999999987654
No 59
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=95.84 E-value=0.2 Score=45.92 Aligned_cols=74 Identities=5% Similarity=-0.050 Sum_probs=54.2
Q ss_pred ceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccc-cccCCCeEee--------
Q 023072 105 VVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDF-FKQFPNCRTY-------- 168 (287)
Q Consensus 105 ~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~-i~~~~~g~l~-------- 168 (287)
++.+.+..++.+ +|. .+|+||. -+-..+++||+++|+|+|+-...+ ... +.....|...
T Consensus 333 ~~~v~~w~pq~~-vL~h~~~~~fvt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~~~g~g~~l~~~~~~~~ 407 (463)
T 2acv_A 333 KGMICGWAPQVE-VLAHKAIGGFVS----HCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGS 407 (463)
T ss_dssp SEEEESSCCHHH-HHHSTTEEEEEE----CCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTSCCEEESCSSCCTTC
T ss_pred CEEEEccCCHHH-HhCCCccCeEEe----cCCchhHHHHHHcCCCeeeccchhhhHHHHHHHHHHcCeEEEEecccCCCC
Confidence 567778887765 676 5677765 445689999999999999998744 223 3444456544
Q ss_pred -c-CHHHHHHHHHHHHh
Q 023072 169 -D-DRNGFVEATLKALA 183 (287)
Q Consensus 169 -~-d~~~l~~~i~~ll~ 183 (287)
. +.+++.++|.++++
T Consensus 408 ~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 408 DVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp CCCCHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHh
Confidence 2 78999999999995
No 60
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=95.67 E-value=0.12 Score=47.62 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=59.2
Q ss_pred hcCCceEEecCCCCHHHHhhhCCE--EEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----ccccc-cCCCeEeec---
Q 023072 101 KLKIVVRVYPGRDHADLIFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFFK-QFPNCRTYD--- 169 (287)
Q Consensus 101 ~~~l~~~v~g~~~~~~~~~~~adv--~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~-~~~~g~l~~--- 169 (287)
+.+.++.+.+..++.+ +|..+++ ||. -+-..+++||+++|+|+|+-...+ ...+. ....|...+
T Consensus 350 ~~~~~~~v~~~~pq~~-~L~h~~~~~~vt----h~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~~ 424 (482)
T 2pq6_A 350 EIADRGLIASWCPQDK-VLNHPSIGGFLT----HCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNV 424 (482)
T ss_dssp HHTTTEEEESCCCHHH-HHTSTTEEEEEE----CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSSC
T ss_pred hcCCCEEEEeecCHHH-HhcCCCCCEEEe----cCCcchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCCC
Confidence 3445778888888765 8877666 543 455689999999999999998855 22343 344565554
Q ss_pred CHHHHHHHHHHHHhCC
Q 023072 170 DRNGFVEATLKALAEE 185 (287)
Q Consensus 170 d~~~l~~~i~~ll~~~ 185 (287)
+.+++.++|.+++.++
T Consensus 425 ~~~~l~~~i~~ll~~~ 440 (482)
T 2pq6_A 425 KREELAKLINEVIAGD 440 (482)
T ss_dssp CHHHHHHHHHHHHTSH
T ss_pred CHHHHHHHHHHHHcCC
Confidence 8999999999999874
No 61
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=95.42 E-value=0.06 Score=47.51 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=66.2
Q ss_pred EEEEEecccccCH--HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEE-ecCCCCHH--HHhhhCCEEE
Q 023072 52 AYYIGKMVWSKGY--KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRV-YPGRDHAD--LIFHDYKVFL 126 (287)
Q Consensus 52 i~~vG~~~~~Kg~--~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v-~g~~~~~~--~~~~~adv~v 126 (287)
++..|.-.+.|.+ +.+.+.+..+.+. +.+++++|...+.+..++..+..+.+... .|..+-.+ .+++.||++|
T Consensus 189 ~i~pga~~~~k~wp~~~~~~l~~~l~~~--g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i 266 (349)
T 3tov_A 189 GFNIGSAVPEKRWPAERFAHVADYFGRL--GYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLI 266 (349)
T ss_dssp EEECCCSSGGGCCCHHHHHHHHHHHHHH--TCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEE
T ss_pred EEeCCCCCccCCCCHHHHHHHHHHHHhC--CCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEE
Confidence 3445543456655 4677777777665 67888888877777677776666544333 36655555 9999999998
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
-. ++ |..-+ |.|+|+|+|+-=.+.
T Consensus 267 ~~---Ds-G~~Hl-Aaa~g~P~v~lfg~t 290 (349)
T 3tov_A 267 TN---DS-GPMHV-GISQGVPIVALYGPS 290 (349)
T ss_dssp EE---SS-HHHHH-HHTTTCCEEEECSSC
T ss_pred EC---CC-CHHHH-HHhcCCCEEEEECCC
Confidence 74 44 44444 899999999964444
No 62
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=94.30 E-value=0.84 Score=44.67 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=83.9
Q ss_pred EEEEEecccccCHHH-HHHHHH---HHHHh-------------cCCeEEEEEeCCcC-H-------HHHHHHHH------
Q 023072 52 AYYIGKMVWSKGYKE-LLELLD---DHQKE-------------LAGLEVDLYGNGED-F-------NQIQEAAE------ 100 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~-ll~a~~---~l~~~-------------~~~~~l~i~G~g~~-~-------~~l~~~~~------ 100 (287)
++++-|+..+|.... ++..+. ++... .....+++.|.... . ..+.+.++
T Consensus 603 dvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp 682 (879)
T 1ygp_A 603 DMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDE 682 (879)
T ss_dssp EEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred eeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 444558999998887 555544 33333 23577777787432 1 11333333
Q ss_pred hcCC--ceEEecCCC--CHHHHhhhCCEEEcCCCC--CcchHHHHHHHhcCCeEEeecCCC-cccccc--CCCeEeec-C
Q 023072 101 KLKI--VVRVYPGRD--HADLIFHDYKVFLNPSTT--DVVCTTTAEALAMGKIVVCANHPS-NDFFKQ--FPNCRTYD-D 170 (287)
Q Consensus 101 ~~~l--~~~v~g~~~--~~~~~~~~adv~v~ps~~--E~~~~~~~EAma~G~PVV~s~~~~-~e~i~~--~~~g~l~~-d 170 (287)
+.+. .+.|++.++ -.+.++.+||+..+.|+. |..|+.=+=+|.-|.+.|.|-.|. .|+... ..|++++. +
T Consensus 683 ~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~vG~eN~fiFG~~ 762 (879)
T 1ygp_A 683 SIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNL 762 (879)
T ss_dssp GGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHHCGGGSEEESCC
T ss_pred hhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHcCcccEEEccCC
Confidence 1232 455566654 344999999999998875 999999999999999999998888 555433 45889987 6
Q ss_pred HHHHHH
Q 023072 171 RNGFVE 176 (287)
Q Consensus 171 ~~~l~~ 176 (287)
.+++.+
T Consensus 763 ~~ev~~ 768 (879)
T 1ygp_A 763 SENVEE 768 (879)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 63
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=93.72 E-value=0.098 Score=45.30 Aligned_cols=125 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred EEEEEecccccCHH--HHHHHHHHHHHhcCCeEEEEE-eCCcCHHHHHHHHHhcCCceEEecCCCCHH--HHhhhCCEEE
Q 023072 52 AYYIGKMVWSKGYK--ELLELLDDHQKELAGLEVDLY-GNGEDFNQIQEAAEKLKIVVRVYPGRDHAD--LIFHDYKVFL 126 (287)
Q Consensus 52 i~~vG~~~~~Kg~~--~ll~a~~~l~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~adv~v 126 (287)
++..|.-.+.|.+. .+.+.+..+.+. ++++++. |...+.+..++..+..+ ++.+.|..+-.+ .+++.||++|
T Consensus 182 ~l~pga~~~~k~wp~~~~~~l~~~L~~~--~~~vvl~~g~~~e~~~~~~i~~~~~-~~~l~g~~sl~el~ali~~a~l~I 258 (326)
T 2gt1_A 182 VFLHATTRDDKHWPEEHWRELIGLLADS--GIRIKLPWGAPHEEERAKRLAEGFA-YVEVLPKMSLEGVARVLAGAKFVV 258 (326)
T ss_dssp EEECCCSSGGGSCCHHHHHHHHHHTTTT--CCEEEECCSSHHHHHHHHHHHTTCT-TEEECCCCCHHHHHHHHHTCSEEE
T ss_pred EEEeCCCCccccCCHHHHHHHHHHHHHC--CCcEEEecCCHHHHHHHHHHHhhCC-cccccCCCCHHHHHHHHHhCCEEE
Confidence 34445434556554 677777777543 6888887 54334444455444443 345566665555 9999999998
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeecCCC-ccccc-cCCCeE--------eec-CHHHHHHHHHHHHhC
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCANHPS-NDFFK-QFPNCR--------TYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i~-~~~~g~--------l~~-d~~~l~~~i~~ll~~ 184 (287)
-. ++ |..-+ |.|+|+|+|+-=.+. ..... -+.... +-+ +++++.+++.+++++
T Consensus 259 ~~---DS-G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 259 SV---DT-GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EE---SS-HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred ec---CC-cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 74 44 44555 777999999863322 11110 011111 112 788888888877764
No 64
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=92.41 E-value=1.7 Score=39.91 Aligned_cols=73 Identities=8% Similarity=-0.093 Sum_probs=51.6
Q ss_pred ecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC-----cccc-ccCCCeEee------c-CHHHHH
Q 023072 109 YPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-----NDFF-KQFPNCRTY------D-DRNGFV 175 (287)
Q Consensus 109 ~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i-~~~~~g~l~------~-d~~~l~ 175 (287)
.+..++. ++|..+++-++- +-+--.+++||+++|+|+|+-...+ ...+ .....|... . +.+++.
T Consensus 344 ~~w~Pq~-~vL~h~~v~~fv--tHgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~ 420 (480)
T 2vch_A 344 PFWAPQA-QVLAHPSTGGFL--THCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVA 420 (480)
T ss_dssp ESCCCHH-HHHHSTTEEEEE--ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSCCCHHHHH
T ss_pred eCccCHH-HHhCCCCcCeEE--ecccchhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCccCHHHHH
Confidence 4578776 599888853332 2444688999999999999988754 2232 343455433 2 789999
Q ss_pred HHHHHHHhC
Q 023072 176 EATLKALAE 184 (287)
Q Consensus 176 ~~i~~ll~~ 184 (287)
++|.+++.+
T Consensus 421 ~av~~vl~~ 429 (480)
T 2vch_A 421 RVVKGLMEG 429 (480)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHhcC
Confidence 999999975
No 65
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=84.28 E-value=2.4 Score=32.93 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHhhhCCEEEcCC----CCCcchHHHHHHHhcCCeEEeecCCC----cc----------cccc-------------CCCe
Q 023072 117 LIFHDYKVFLNPS----TTDVVCTTTAEALAMGKIVVCANHPS----ND----------FFKQ-------------FPNC 165 (287)
Q Consensus 117 ~~~~~adv~v~ps----~~E~~~~~~~EAma~G~PVV~s~~~~----~e----------~i~~-------------~~~g 165 (287)
..+..||++|.-- ...|...-+-=|.|.|+||++-.... .. ...+ ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 7789999977632 12344455566899999999885532 11 1111 0278
Q ss_pred EeecCHHHHHHHHHHHH
Q 023072 166 RTYDDRNGFVEATLKAL 182 (287)
Q Consensus 166 ~l~~d~~~l~~~i~~ll 182 (287)
.++.+.+++.++|.+.+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 88899999999988764
No 66
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=80.02 E-value=16 Score=26.93 Aligned_cols=108 Identities=6% Similarity=-0.084 Sum_probs=65.9
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHh-----cCCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma-----~G~PVV~ 150 (287)
..+++|+.+.+. ...+.+...+.+..+.........-+.+.. .|++++-.. .+.-|+.+++.+- ..+|||.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 457788866443 455667777666554333222111144433 477766433 4556788887775 3567776
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCCC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEPA 187 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~~ 187 (287)
... .. .+.+..+..+++.. +.+++..++..++.....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 443 33 33455566777775 999999999999886544
No 67
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=78.98 E-value=13 Score=35.90 Aligned_cols=69 Identities=4% Similarity=-0.029 Sum_probs=48.6
Q ss_pred cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCcc----------ccccCCCeEeecCHHHHHHHHH
Q 023072 110 PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSND----------FFKQFPNCRTYDDRNGFVEATL 179 (287)
Q Consensus 110 g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e----------~i~~~~~g~l~~d~~~l~~~i~ 179 (287)
...++..++|..||++|- -++.+++|++.+++|||-...--.+ .+.+..-|-++.|.+++.++|.
T Consensus 604 ~~~~di~~ll~~aD~lIT-----DySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~~~eL~~~i~ 678 (729)
T 3l7i_A 604 SNYNDVSELFLISDCLIT-----DYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTEPYGLAKELK 678 (729)
T ss_dssp TTCSCHHHHHHTCSEEEE-----SSCTHHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESSHHHHHHHHT
T ss_pred CCCcCHHHHHHHhCEEEe-----echHHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECCHHHHHHHHh
Confidence 444555589999999975 3688999999999999988321111 1112223556679999999998
Q ss_pred HHHh
Q 023072 180 KALA 183 (287)
Q Consensus 180 ~ll~ 183 (287)
....
T Consensus 679 ~~~~ 682 (729)
T 3l7i_A 679 NLDK 682 (729)
T ss_dssp THHH
T ss_pred hhhc
Confidence 8765
No 68
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=78.41 E-value=4.5 Score=32.69 Aligned_cols=90 Identities=14% Similarity=0.067 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCHH-HHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHAD-LIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~~-~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|.+|+.-+..- ..-++.++|.... .+.+++.+.+.+.. .+++|+. ..-. .-+..=|+++..... .-.
T Consensus 51 kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~-~e~ 128 (208)
T 1vi6_A 51 KLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPA-IDK 128 (208)
T ss_dssp HHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTT-TTH
T ss_pred HHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCC-cch
Confidence 4445555666555444 4467888998665 45677778777763 2344553 2222 223445666655432 224
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
.++.||.-+|+|||+--.
T Consensus 129 ~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 129 QAVSEATAVGIPVVALCD 146 (208)
T ss_dssp HHHHHHHHTTCCEEEEEC
T ss_pred hHHHHHHHhCCCEEEEeC
Confidence 789999999999998643
No 69
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=77.45 E-value=5.3 Score=34.93 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=61.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~p 128 (287)
+|..||-=...+.+...+..+..+....++++++-+-+.. .+..++.+++++.. +++ .+.++++.. .|+++..
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~-~~~a~~~a~~~g~~-~~y---~d~~ell~~~~iDaV~Ia 101 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEAN-AGLAEARAGEFGFE-KAT---ADWRALIADPEVDVVSVT 101 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC---TTHHHHHHHHTCS-EEE---SCHHHHHHCTTCCEEEEC
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCC-HHHHHHHHHHhCCC-eec---CCHHHHhcCCCCcEEEEC
Confidence 6888874222232333333343333445778887776643 35667788888764 333 344567765 5788777
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....=.-.+++|+..|++|+|-+.
T Consensus 102 tP~~~H~~~a~~al~aGkhVl~EKP 126 (393)
T 4fb5_A 102 TPNQFHAEMAIAALEAGKHVWCEKP 126 (393)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CChHHHHHHHHHHHhcCCeEEEccC
Confidence 7666555667899999999999875
No 70
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=74.71 E-value=11 Score=31.87 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=58.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
++.++|-=.. |...++.++ ...++++++-+-+. +.+..++.+++++... ..+.++++...|+.+..+.
T Consensus 8 ~igiIG~G~~--g~~~~~~~l----~~~~~~~l~av~d~-~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp 75 (308)
T 3uuw_A 8 KMGMIGLGSI--AQKAYLPIL----TKSERFEFVGAFTP-NKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSS 75 (308)
T ss_dssp EEEEECCSHH--HHHHTHHHH----TSCSSSEEEEEECS-CHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCC
T ss_pred cEEEEecCHH--HHHHHHHHH----HhCCCeEEEEEECC-CHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCC
Confidence 5777774111 111233333 23467887755443 4466777777777542 4555567778999988777
Q ss_pred CCcchHHHHHHHhcCCeEEeecC
Q 023072 131 TDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 131 ~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
...-.-.+.+|+..|++|+|-+.
T Consensus 76 ~~~h~~~~~~al~~gk~vl~EKP 98 (308)
T 3uuw_A 76 TETHYEIIKILLNLGVHVYVDKP 98 (308)
T ss_dssp GGGHHHHHHHHHHTTCEEEECSS
T ss_pred cHhHHHHHHHHHHCCCcEEEcCC
Confidence 66656667889999999998754
No 71
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=73.63 E-value=10 Score=30.45 Aligned_cols=90 Identities=14% Similarity=0.033 Sum_probs=55.3
Q ss_pred cccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC---ceEEecCC-CCHH-HHhhhCCEEEcCCCCCc
Q 023072 60 WSKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DHAD-LIFHDYKVFLNPSTTDV 133 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~~~v~g~~-~~~~-~~~~~adv~v~ps~~E~ 133 (287)
-.|=+..|..|+..+... ..-.+.++|.... .+.+.+.+.+.|. +.++.|+. ..-. +-+..=|+++.....+
T Consensus 45 L~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~- 122 (202)
T 3j20_B 45 VRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRA- 122 (202)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTT-
T ss_pred HHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCcc-
Confidence 334455666666666544 3457788898765 4567777777654 44556653 2221 2234456666543321
Q ss_pred chHHHHHHHhcCCeEEee
Q 023072 134 VCTTTAEALAMGKIVVCA 151 (287)
Q Consensus 134 ~~~~~~EAma~G~PVV~s 151 (287)
--.++.||...|+|+|+-
T Consensus 123 d~~ai~EA~~l~IP~Ial 140 (202)
T 3j20_B 123 DHQAMREAVEIGIPIVAL 140 (202)
T ss_dssp SHHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHHcCCCEEEE
Confidence 247889999999999974
No 72
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=72.67 E-value=23 Score=30.40 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=50.5
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..++++++-+-+. +.+..++.+++++....++ .+.++++.. .|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 24 ~~~~~~l~av~d~-~~~~~~~~~~~~g~~~~~~---~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP 98 (344)
T 3mz0_A 24 KLSGAEIVAVTDV-NQEAAQKVVEQYQLNATVY---PNDDSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKP 98 (344)
T ss_dssp TCSSEEEEEEECS-SHHHHHHHHHHTTCCCEEE---SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred hCCCcEEEEEEcC-CHHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCC
Confidence 4477887755443 3467777888887533443 344567775 79988877666655667789999999998654
No 73
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=72.34 E-value=40 Score=28.73 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=57.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
++.++|-=.. | ..+++++.+ .++++++-+-+.. .+..++.+++++.. ....+.++++. ..|+++..
T Consensus 7 ~igiiG~G~~--g-~~~~~~l~~----~~~~~l~av~d~~-~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~ 74 (330)
T 3e9m_A 7 RYGIMSTAQI--V-PRFVAGLRE----SAQAEVRGIASRR-LENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIP 74 (330)
T ss_dssp EEEECSCCTT--H-HHHHHHHHH----SSSEEEEEEBCSS-SHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEEC
T ss_pred EEEEECchHH--H-HHHHHHHHh----CCCcEEEEEEeCC-HHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEc
Confidence 4666663111 1 234455533 3677777555443 36667777777642 12345556777 68998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 75 tp~~~h~~~~~~al~~gk~vl~EKP 99 (330)
T 3e9m_A 75 TYNQGHYSAAKLALSQGKPVLLEKP 99 (330)
T ss_dssp CCGGGHHHHHHHHHHTTCCEEECSS
T ss_pred CCCHHHHHHHHHHHHCCCeEEEeCC
Confidence 7665555567789999999998764
No 74
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=71.92 E-value=19 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=48.5
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++-+-+. +.+..++.+++++.. ..+.++++. ..|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 25 ~~~~~l~av~d~-~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 95 (331)
T 4hkt_A 25 NADARLVAVADA-FPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTDTHADLIERFARAGKAIFCEKP 95 (331)
T ss_dssp CTTEEEEEEECS-SHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCcEEEEEECC-CHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecC
Confidence 467877755443 346677777777643 344556777 689988877666555667889999999998764
No 75
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=71.79 E-value=7.3 Score=33.93 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=59.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHh---cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEE
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKE---LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVF 125 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~---~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~ 125 (287)
+|..||-=...+. .++++..+... ..+++++-+.+. +.+..++.+++++.. +++ .+.++++.. .|++
T Consensus 8 rvgiIG~G~ig~~---h~~~~~~~~~~~~~~~~~~l~av~d~-~~~~a~~~a~~~g~~-~~~---~d~~~ll~~~~iDaV 79 (390)
T 4h3v_A 8 GIGLIGYAFMGAA---HSQAWRSAPRFFDLPLHPDLNVLCGR-DAEAVRAAAGKLGWS-TTE---TDWRTLLERDDVQLV 79 (390)
T ss_dssp EEEEECHHHHHHH---HHHHHHHHHHHSCCSSEEEEEEEECS-SHHHHHHHHHHHTCS-EEE---SCHHHHTTCTTCSEE
T ss_pred cEEEEcCCHHHHH---HHHHHHhCccccccccCceEEEEEcC-CHHHHHHHHHHcCCC-ccc---CCHHHHhcCCCCCEE
Confidence 5677773222222 34444444322 224466666553 457788888888864 333 334567765 5778
Q ss_pred EcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 126 LNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 126 v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
+..+....=.-.+++||..|++|+|-+.-
T Consensus 80 ~I~tP~~~H~~~~~~al~aGkhVl~EKPl 108 (390)
T 4h3v_A 80 DVCTPGDSHAEIAIAALEAGKHVLCEKPL 108 (390)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSS
T ss_pred EEeCChHHHHHHHHHHHHcCCCceeecCc
Confidence 77776666566678999999999998763
No 76
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=71.54 E-value=25 Score=25.22 Aligned_cols=107 Identities=6% Similarity=-0.107 Sum_probs=64.4
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHhc-----CCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma~-----G~PVV~ 150 (287)
..+++|+.+.+. ...+.......+..+.........-..+. ..|++|+-.. .+.-|+.+++.+.. .+|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 567888876543 55666666666654333322221113333 3577765433 34567788888764 567765
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
-.. .. .+.+..+..+++.. +.+++..+|..++....
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 433 33 23445566777765 99999999999887533
No 77
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=70.06 E-value=15 Score=31.58 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=51.4
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
..|+++++-+.+. +.+..++.+++++.. +++ .+.++++.. .|+++..+....=.-.+.+|+..|++|+|-+.-
T Consensus 45 ~~~~~~lvav~d~-~~~~a~~~a~~~g~~-~~y---~d~~ell~~~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPl 119 (350)
T 4had_A 45 DAENCVVTAIASR-DLTRAREMADRFSVP-HAF---GSYEEMLASDVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPL 119 (350)
T ss_dssp HCSSEEEEEEECS-SHHHHHHHHHHHTCS-EEE---SSHHHHHHCSSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCC
T ss_pred hCCCeEEEEEECC-CHHHHHHHHHHcCCC-eee---CCHHHHhcCCCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCc
Confidence 3478888766654 457778888888864 333 344567765 588887776655455678999999999998753
No 78
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=69.82 E-value=15 Score=28.26 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=25.6
Q ss_pred HHhhhCCEEEcCCC-------CCcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNPST-------TDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~-------~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..+..||++|.--. ..|...-+-=|.|.|+|||+-..
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~ 106 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTS 106 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 78999999875421 23344445558899999999654
No 79
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=69.76 E-value=5.6 Score=28.31 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=39.4
Q ss_pred EEEEeCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh
Q 023072 83 VDLYGNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA 143 (287)
Q Consensus 83 l~i~G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma 143 (287)
++++|.|-. -+.+++.+++.++.+.+. ......+..+..+|+++..... .+-..-++..+
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv-~~~~~~~~~~~ 71 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQI-AYMLPEIQRLL 71 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTS-GGGHHHHHHHS
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccch-hhhHHHHHHHh
Confidence 455577765 457888899999987774 5555555678899998876543 23344445544
No 80
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=69.69 E-value=30 Score=25.35 Aligned_cols=103 Identities=9% Similarity=0.074 Sum_probs=54.2
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceE-EecCCCCHHHHhh----hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEe
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVR-VYPGRDHADLIFH----DYKVFLNPST-TDVVCTTTAEALA---MGKIVVC 150 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~-v~g~~~~~~~~~~----~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~ 150 (287)
.+++|+.+... ...+.....+.+..+. ........-..+. ..|++++-.. .+.-|+.+++.+. ..+|||.
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ 116 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIM 116 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEE
Confidence 45566654332 3445555555554332 1111111112222 3466665333 3445666666553 3566665
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
... .. .+.+..+..+++.. +.+++.++|..++.
T Consensus 117 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 117 ISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 443 32 33455666777775 99999999988764
No 81
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=69.25 E-value=8.3 Score=32.51 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=33.7
Q ss_pred CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 113 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 113 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++.++++..+|++|..+..+..---+..++..|+|+|+..+|-
T Consensus 65 ~dl~~ll~~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 65 DDIERVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CCHHHHHHHCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 4445788899999988877765556778999999999977654
No 82
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=68.86 E-value=28 Score=30.01 Aligned_cols=71 Identities=8% Similarity=0.116 Sum_probs=48.6
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..++++++-+-+. +.+..++.+++++.. ...+.++++. ..|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 26 ~~~~~~lvav~d~-~~~~~~~~~~~~g~~-----~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP 98 (354)
T 3db2_A 26 KSEKLKLVTCYSR-TEDKREKFGKRYNCA-----GDATMEALLAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKP 98 (354)
T ss_dssp TCSSEEEEEEECS-SHHHHHHHHHHHTCC-----CCSSHHHHHHCSSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCcEEEEEECC-CHHHHHHHHHHcCCC-----CcCCHHHHhcCCCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccC
Confidence 3467877755443 346677777777643 1455557774 578888777665555567789999999999764
No 83
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=68.71 E-value=29 Score=24.75 Aligned_cols=104 Identities=10% Similarity=-0.039 Sum_probs=61.8
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh----hCCEEEcCC-CCCcchHHHHHHHh---cCCeEEee
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH----DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCA 151 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~----~adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s 151 (287)
.+++|+.+.+. ...+.......+..+............+. ..|+++.-. ..+.-|+.+++.+. ..+|||.-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 46777766443 45566667766654333322222224443 457766533 34556677766654 36777655
Q ss_pred cC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 152 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 152 ~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 84 TGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp ECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 44 33 33556666777765 999999999998864
No 84
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=68.63 E-value=9 Score=31.89 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=53.6
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCH-HHHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHA-DLIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~-~~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|.+|+..+..-...-++.++|.... .+.+.+.+.+.+.. .+++|+. ..- ..-+..=|+++.....+ --
T Consensus 86 kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~-e~ 164 (253)
T 3bch_A 86 RTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRA-DH 164 (253)
T ss_dssp HHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTT-TH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCc-cc
Confidence 334455555555542112356888898654 34577777777763 2344553 221 13344557766544322 24
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
.++.||..+|+|||+--.
T Consensus 165 ~AI~EA~~lgIPvIalvD 182 (253)
T 3bch_A 165 QPLTEASYVNLPTIALCN 182 (253)
T ss_dssp HHHHHHHHTTCCEEEEEC
T ss_pred hHHHHHHHhCCCEEEEEc
Confidence 789999999999998644
No 85
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=68.15 E-value=28 Score=29.80 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=57.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
+|.++|-=.- |. .++.++. ..++++++-+-+. +.+..++.+++++ ..++ .+.++++. ..|+++..
T Consensus 6 rvgiiG~G~~--g~-~~~~~l~----~~~~~~l~av~d~-~~~~~~~~a~~~g--~~~~---~~~~~~l~~~~~D~V~i~ 72 (344)
T 3euw_A 6 RIALFGAGRI--GH-VHAANIA----ANPDLELVVIADP-FIEGAQRLAEANG--AEAV---ASPDEVFARDDIDGIVIG 72 (344)
T ss_dssp EEEEECCSHH--HH-HHHHHHH----HCTTEEEEEEECS-SHHHHHHHHHTTT--CEEE---SSHHHHTTCSCCCEEEEC
T ss_pred EEEEECCcHH--HH-HHHHHHH----hCCCcEEEEEECC-CHHHHHHHHHHcC--Ccee---CCHHHHhcCCCCCEEEEe
Confidence 5677774111 11 2344443 2467877755443 3466777777776 3333 44456787 78998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 73 tp~~~h~~~~~~al~~gk~v~~EKP 97 (344)
T 3euw_A 73 SPTSTHVDLITRAVERGIPALCEKP 97 (344)
T ss_dssp SCGGGHHHHHHHHHHTTCCEEECSC
T ss_pred CCchhhHHHHHHHHHcCCcEEEECC
Confidence 7766656667889999999998764
No 86
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=66.49 E-value=40 Score=29.10 Aligned_cols=93 Identities=20% Similarity=0.259 Sum_probs=58.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
+|.++|-=...+ ..+.++ ....++++++-+-+.. .+..++.+++++....++ .+.++++. ..|+++..
T Consensus 25 rvgiIG~G~~g~---~~~~~l---~~~~~~~~lvav~d~~-~~~~~~~a~~~g~~~~~~---~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 25 KAGIVGIGMIGS---DHLRRL---ANTVSGVEVVAVCDIV-AGRAQAALDKYAIEAKDY---NDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEECCSHHHH---HHHHHH---HHTCTTEEEEEEECSS-TTHHHHHHHHHTCCCEEE---SSHHHHHHCTTCCEEEEC
T ss_pred eEEEECCcHHHH---HHHHHH---HhhCCCcEEEEEEeCC-HHHHHHHHHHhCCCCeee---CCHHHHhcCCCCCEEEEc
Confidence 577777421111 233333 2234778877655543 356677777777533343 34456776 47998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 95 tp~~~h~~~~~~al~aGk~Vl~EKP 119 (357)
T 3ec7_A 95 ASNEAHADVAVAALNANKYVFCEKP 119 (357)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCcHHHHHHHHHHHHCCCCEEeecC
Confidence 7666656667899999999998764
No 87
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=66.47 E-value=32 Score=24.39 Aligned_cols=106 Identities=11% Similarity=-0.004 Sum_probs=64.3
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PVV~ 150 (287)
..+++|+.+... ...+.....+.+..+.........-+.+.. .|++++-.. .+.-|+.+++.+.. .+|||.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 456777765443 455666666666554333322211133333 477766433 35567888887764 678877
Q ss_pred ecCCC-----c-cccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 151 ANHPS-----N-DFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 151 s~~~~-----~-e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
-.... . ..+..+..+++.. +.+++..+|..++...
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 65433 1 4445556667765 9999999999998753
No 88
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=66.31 E-value=9.4 Score=30.47 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=39.7
Q ss_pred HHhhhCCEEEcCCCCCcchH--HHHHHHhcCCeEEeecCCC--cccccc----------C-CCe-EeecCHHHHHHHHHH
Q 023072 117 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANHPS--NDFFKQ----------F-PNC-RTYDDRNGFVEATLK 180 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~--~~~EAma~G~PVV~s~~~~--~e~i~~----------~-~~g-~l~~d~~~l~~~i~~ 180 (287)
-+...+|.+|..- -++|+ .+.||+..|+||++-+..+ .+.+.. . .+. .+++|++++.+.|.+
T Consensus 114 ~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 114 VLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 5566788877632 23333 4788999999999998654 222211 1 112 345699999888765
Q ss_pred H
Q 023072 181 A 181 (287)
Q Consensus 181 l 181 (287)
.
T Consensus 192 ~ 192 (195)
T 1rcu_A 192 I 192 (195)
T ss_dssp C
T ss_pred H
Confidence 3
No 89
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=65.79 E-value=33 Score=24.33 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=60.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PVV~ 150 (287)
..+++|+.+.+. ...+.......+..+............+.. .|++++-.. .+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 567788876443 455666666666543333222222144433 467665333 34567778877754 467765
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
-.. .. ...+..+..+++.. +.+++...|..++..
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 87 LTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 433 22 33444445566665 999999999988753
No 90
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=63.96 E-value=12 Score=31.06 Aligned_cols=90 Identities=12% Similarity=0.040 Sum_probs=52.8
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCH-HHHhhhCCEEEcCCCCCcc
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHA-DLIFHDYKVFLNPSTTDVV 134 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~-~~~~~~adv~v~ps~~E~~ 134 (287)
.|=+..|..|+..+..-...-.+.++|.... ...+.+.+.+.|.. .+++|+. ..- ..-++.=|++|..... .=
T Consensus 51 ~kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~-~d 129 (252)
T 3u5c_A 51 GKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPR-SD 129 (252)
T ss_dssp HHHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTT-TT
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCc-cc
Confidence 3444555556555543212346788898664 34567777777752 2344553 222 1334445776665433 22
Q ss_pred hHHHHHHHhcCCeEEee
Q 023072 135 CTTTAEALAMGKIVVCA 151 (287)
Q Consensus 135 ~~~~~EAma~G~PVV~s 151 (287)
..++.||...|+|+|+-
T Consensus 130 ~~ai~EA~~l~IP~Ial 146 (252)
T 3u5c_A 130 AQAIKEASYVNIPVIAL 146 (252)
T ss_dssp HHHHHHHHTTTCCEEEE
T ss_pred hHHHHHHHHcCCCEEEE
Confidence 57889999999999974
No 91
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=63.93 E-value=34 Score=24.27 Aligned_cols=107 Identities=10% Similarity=-0.067 Sum_probs=62.7
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHh-cCCceEEecCCCCHHHHhhh---CCEEEcCCCC--CcchHHHHHHHhc-----CCe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHADLIFHD---YKVFLNPSTT--DVVCTTTAEALAM-----GKI 147 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~~~v~g~~~~~~~~~~~---adv~v~ps~~--E~~~~~~~EAma~-----G~P 147 (287)
..+++|+.+.+. ...++....+ .+..+.........-..+.. .|++|.-... +.-|+.+++.+.. .+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ 83 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTP 83 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCC
Confidence 356777766443 4556666666 56544333222111133433 5777764433 3456777776654 677
Q ss_pred EEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 148 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 148 VV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
||.-.. .. .+.+..+..+++.. +.+++.++|..++....
T Consensus 84 ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 84 VIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp EEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 776544 32 33455566777775 99999999999987643
No 92
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=63.32 E-value=38 Score=24.12 Aligned_cols=105 Identities=11% Similarity=-0.028 Sum_probs=61.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh---hCCEEEcCCCC-C-cchHHHHHHHh--cCCeEEee
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---DYKVFLNPSTT-D-VVCTTTAEALA--MGKIVVCA 151 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~---~adv~v~ps~~-E-~~~~~~~EAma--~G~PVV~s 151 (287)
..+++|+.+.+. ...+.....+.+..+.........-..+. ..|++++-... + .-|+.+++.+. -.+|||.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 356777766443 45566777777655433322211114443 34777764333 3 45667766654 36777664
Q ss_pred cC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 152 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 152 ~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 124 (140)
T 3h5i_A 85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRL 124 (140)
T ss_dssp ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 43 22 23444455667765 999999999998764
No 93
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=63.21 E-value=12 Score=31.96 Aligned_cols=90 Identities=9% Similarity=-0.014 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCC---ceEEecCC-CC-HHHHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKI---VVRVYPGR-DH-ADLIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l---~~~v~g~~-~~-~~~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|..|+.-+..-...-++.++|.... ...+.+.+.+.+. +.+++|+. .. ....++.=|++|+....+ --
T Consensus 57 kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~-d~ 135 (305)
T 3iz6_A 57 KTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT-DH 135 (305)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTT-TH
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCccc-ch
Confidence 444555556555543212346788898664 3456677777665 23445553 22 223344457766654332 24
Q ss_pred HHHHHHHhcCCeEEeec
Q 023072 136 TTTAEALAMGKIVVCAN 152 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~ 152 (287)
..+.||..+|+|+|+--
T Consensus 136 qAI~EA~~lnIPtIALv 152 (305)
T 3iz6_A 136 QPIKESALGNIPTIAFC 152 (305)
T ss_dssp HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 78899999999999743
No 94
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=63.12 E-value=39 Score=24.18 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=57.4
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcC-CceEEecCCCCHH---HHh---hhCCEEEcCCC-CCcchHHHHHHHhc---CCe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHAD---LIF---HDYKVFLNPST-TDVVCTTTAEALAM---GKI 147 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~-l~~~v~g~~~~~~---~~~---~~adv~v~ps~-~E~~~~~~~EAma~---G~P 147 (287)
..+++|+.+... ...+.....+.+ ..+... .+..+ .+. ...|++|+-.. .+.-|+.+++.+.. .+|
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~--~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTRT--VGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEEE--CCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEe--CCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 356666655332 344555555555 333222 22222 222 34577665332 34456666665543 567
Q ss_pred EEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 148 VVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 148 VV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
||.-.. .. .+.+..+..+++.. +.++|..+|..++...
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 765443 32 23455555667765 9999999999998764
No 95
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=63.04 E-value=28 Score=29.89 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=48.7
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++-+-+. +.+..++.+++++.. .++ .+.++++. ..|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 24 ~~~~~l~av~d~-~~~~~~~~~~~~~~~-~~~---~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP 96 (344)
T 3ezy_A 24 IDDAILYAISDV-REDRLREMKEKLGVE-KAY---KDPHELIEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKP 96 (344)
T ss_dssp STTEEEEEEECS-CHHHHHHHHHHHTCS-EEE---SSHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESC
T ss_pred CCCcEEEEEECC-CHHHHHHHHHHhCCC-cee---CCHHHHhcCCCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECC
Confidence 467877755443 346667777777643 222 34456777 689988877666555567789999999998764
No 96
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=62.66 E-value=38 Score=23.89 Aligned_cols=105 Identities=11% Similarity=-0.005 Sum_probs=58.1
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-C-----CcchHHHHHHHh---cCCeE
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-T-----DVVCTTTAEALA---MGKIV 148 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~-----E~~~~~~~EAma---~G~PV 148 (287)
.+++|+.+.+. ...+.....+.+..+............+.. .|++++-.. . +.-|+.+++.+. ..+||
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 46677765433 345555665555443333222222134433 366665322 2 344666666553 46777
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
|.-.. .. ...+..+..+++.. +.+++..+|..++...
T Consensus 84 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 65433 22 33445566677665 9999999999998753
No 97
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=62.60 E-value=48 Score=25.12 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=39.9
Q ss_pred CEEEcCCCCCcchHHHHHHH----hcCCeEEeecCCC---cc------ccccCCCeEeec-CHHHHHHHHHHHH
Q 023072 123 KVFLNPSTTDVVCTTTAEAL----AMGKIVVCANHPS---ND------FFKQFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAm----a~G~PVV~s~~~~---~e------~i~~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
.+.++|.-+-..+.++.+|+ +.++|+|=-.... +| ++.+...|.++. -.+...-++..++
T Consensus 73 giiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~FRh~S~~s~~a~G~I~G~G~~gY~lAl~~~~ 146 (151)
T 3u80_A 73 PVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFRKRSVISPVATGTITGMGFYGYKLALDAVA 146 (151)
T ss_dssp CEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC---------CSCCCCSEEEESSTTHHHHHHHHHHH
T ss_pred EEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccchhhcccccccceEEEEecChHHHHHHHHHHH
Confidence 47889988888999999994 4599999765543 66 444445666665 5555555555444
No 98
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=62.46 E-value=12 Score=30.98 Aligned_cols=91 Identities=11% Similarity=0.007 Sum_probs=53.5
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc----eEEecCC-CCHH-HHhhhCCEEEcCCCCCcc
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV----VRVYPGR-DHAD-LIFHDYKVFLNPSTTDVV 134 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~----~~v~g~~-~~~~-~~~~~adv~v~ps~~E~~ 134 (287)
|=+..|..|+.-+..-...-++.++|.... ...+.+.+.+.+.. .+++|+. ..-. ..+..=|+++..... .-
T Consensus 48 kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~-~e 126 (241)
T 2xzm_B 48 ETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPR-SD 126 (241)
T ss_dssp HHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTT-TT
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCC-cc
Confidence 444455555555543212356788998654 34466667666653 2466663 2222 334455776665432 23
Q ss_pred hHHHHHHHhcCCeEEeecC
Q 023072 135 CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 135 ~~~~~EAma~G~PVV~s~~ 153 (287)
...+.||.-+|+|||+--.
T Consensus 127 ~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 127 FQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp HHHHHHHTTTTCCEEECCC
T ss_pred hHHHHHHHHhCCCEEEEec
Confidence 5889999999999998643
No 99
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=61.80 E-value=53 Score=25.38 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=55.7
Q ss_pred HHHHHHhcCCceEEecCCCCHH--HHhhh----C-CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---ccc-----
Q 023072 95 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDF----- 158 (287)
Q Consensus 95 l~~~~~~~~l~~~v~g~~~~~~--~~~~~----a-dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~----- 158 (287)
+++.+.++++.+.++..-...+ +.++. + .+.|+|.-+--.+.++.+|+ +.++|+|=-.... +|.
T Consensus 62 l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRhhS 141 (172)
T 3n8k_A 62 IEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHS 141 (172)
T ss_dssp HHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHTTCCSCEEEEESSCTTSSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHhCCCCEEEEEcCCchhcccccccc
Confidence 4555666666666653222122 33332 2 47889988888899999998 5789998765543 663
Q ss_pred -cccCCCeEeec-CHHHHHHHHHHHHh
Q 023072 159 -FKQFPNCRTYD-DRNGFVEATLKALA 183 (287)
Q Consensus 159 -i~~~~~g~l~~-d~~~l~~~i~~ll~ 183 (287)
+.+...|.++. -.+...-++..+++
T Consensus 142 ~is~~a~GvI~G~G~~gY~lAl~al~~ 168 (172)
T 3n8k_A 142 YLSPIATGVIVGLGIQGYLLALRYLAE 168 (172)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccceEEEEeCChHHHHHHHHHHHH
Confidence 44444667766 66666666666654
No 100
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=61.51 E-value=13 Score=31.67 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCc---eEEecCC-CCHH-HHhhhCCEEEcCCCCCcch
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIV---VRVYPGR-DHAD-LIFHDYKVFLNPSTTDVVC 135 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~---~~v~g~~-~~~~-~~~~~adv~v~ps~~E~~~ 135 (287)
|=+..|.+|+.-+..-...-+++++|.... ...+.+.+.+.+.. .+++|+. ..-. .-++.=|+++....... .
T Consensus 53 kT~~~L~~A~~~i~~i~~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e-~ 131 (295)
T 2zkq_b 53 RTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD-H 131 (295)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT-H
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcc-h
Confidence 444455555555542112456888888654 34567777777753 2344553 2221 23444577665543322 5
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
..+.||..+|+|||+--.
T Consensus 132 ~AI~EA~~lgIPvIalvD 149 (295)
T 2zkq_b 132 QPLTEASYVNLPTIALCN 149 (295)
T ss_dssp HHHHHHHHHTCCEEEEEC
T ss_pred hHHHHHHHhCCCEEEEec
Confidence 889999999999998643
No 101
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=61.07 E-value=23 Score=30.06 Aligned_cols=71 Identities=13% Similarity=0.248 Sum_probs=47.1
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHh-hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~-~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++.+-+. +.+..++.+++++. ..++ .+.++++ ...|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 23 ~~~~~~~~v~d~-~~~~~~~~~~~~~~-~~~~---~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP 94 (325)
T 2ho3_A 23 SGEYQLVAIYSR-KLETAATFASRYQN-IQLF---DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKP 94 (325)
T ss_dssp TTSEEEEEEECS-SHHHHHHHGGGSSS-CEEE---SCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCeEEEEEEeC-CHHHHHHHHHHcCC-CeEe---CCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCcEEEecC
Confidence 367777655443 34556666666663 1233 3345567 5689998887766656667789999999999753
No 102
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=60.90 E-value=24 Score=30.94 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=48.6
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++-+-+. +.+..++.+++++.. ++ .+.++++.. .|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 25 ~~~~~l~av~d~-~~~~~~~~a~~~g~~--~~---~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP 96 (387)
T 3moi_A 25 HPDAQIVAACDP-NEDVRERFGKEYGIP--VF---ATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKP 96 (387)
T ss_dssp CTTEEEEEEECS-CHHHHHHHHHHHTCC--EE---SSHHHHHHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCeEEEEEEeC-CHHHHHHHHHHcCCC--eE---CCHHHHHcCCCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCC
Confidence 467777766543 346666777777643 32 445567775 79988877765555567799999999998764
No 103
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=60.38 E-value=14 Score=28.17 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHhhhCCEEEcCCC--CCcchHHHHHHHhcCCeEEeecCCC----cc-ccccCCCe-----EeecCHHHHHHHHHHHHhC
Q 023072 117 LIFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPS----ND-FFKQFPNC-----RTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 117 ~~~~~adv~v~ps~--~E~~~~~~~EAma~G~PVV~s~~~~----~e-~i~~~~~g-----~l~~d~~~l~~~i~~ll~~ 184 (287)
+.++.||++|.--. ..|.+.-+-=|.+.|+||++--.+. .. .+....++ ..|.+ +++-+.|.+.++.
T Consensus 64 ~~i~~aD~vvA~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~~ 142 (152)
T 4fyk_A 64 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFEA 142 (152)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC-
T ss_pred HHHHHCCEEEEeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHHh
Confidence 78999999876322 2345555666899999999933321 12 22222331 23446 8888888877764
No 104
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=60.20 E-value=42 Score=23.59 Aligned_cols=106 Identities=10% Similarity=-0.029 Sum_probs=63.5
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh---CCEEEcCC-CCCcchHHHHHHHhc----CCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNPS-TTDVVCTTTAEALAM----GKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~---adv~v~ps-~~E~~~~~~~EAma~----G~PVV~ 150 (287)
..+++|+.+.+. ...+.....+.+..+............+.. .|++++-. ..+.-|+.+++.+.. .+|||.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 467788876443 455677777777654433222222133332 46666533 345567888887753 467776
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
... .. .+.+..+..+++.. +.+++..+|.++....
T Consensus 87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 544 33 33455566777775 9999999999988764
No 105
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=59.77 E-value=9.9 Score=29.79 Aligned_cols=66 Identities=23% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHhhhCCEEEcCCCCCcchH--HHHHHHhcCCeEEeecCCC--ccccccC-CCe-EeecCHHHHHHHHHHHHhC
Q 023072 117 LIFHDYKVFLNPSTTDVVCT--TTAEALAMGKIVVCANHPS--NDFFKQF-PNC-RTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~--~~~EAma~G~PVV~s~~~~--~e~i~~~-~~g-~l~~d~~~l~~~i~~ll~~ 184 (287)
-+...+|.+|... -++|+ .+.||+..++||++-+.-+ ..++... ... .+++|++++.+.+.+.+..
T Consensus 103 ~m~~~sda~Ivlp--Gg~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 103 INALSSNVLVAVG--MGPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCGGGCSEEEEES--CCHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHhCCEEEEec--CCccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 4455677766521 13333 4778899999999998732 2233222 222 4556999999999988764
No 106
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.60 E-value=42 Score=23.46 Aligned_cols=104 Identities=12% Similarity=0.015 Sum_probs=60.8
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEE--ecCCCCHHHHhh---------hCCEEEcCCC-CCcchHHHHHHHh----
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRV--YPGRDHADLIFH---------DYKVFLNPST-TDVVCTTTAEALA---- 143 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v--~g~~~~~~~~~~---------~adv~v~ps~-~E~~~~~~~EAma---- 143 (287)
.+++|+.+.+. ...+.......+....+ .......-..+. ..|++++=.. .+.-|+.+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 46677766443 45567777776653233 222222224444 3577766433 3446777777765
Q ss_pred -cCCeEEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 144 -MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 144 -~G~PVV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
..+|||.-.. .. .+.+..+..+++.. +.+++..++..++..
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHH
Confidence 4567665433 32 33445566777765 999999999888753
No 107
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=59.50 E-value=46 Score=25.62 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=44.3
Q ss_pred EEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---cc------ccccCCCeEeec-CHHHHHHHHHHHHhC
Q 023072 124 VFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---ND------FFKQFPNCRTYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e------~i~~~~~g~l~~-d~~~l~~~i~~ll~~ 184 (287)
+.|||.-+--.+.++.+|+ +.++|+|=-.... +| ++.+...|.++. -.+...-++..+++.
T Consensus 87 IIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~l~~~ 158 (167)
T 3kip_A 87 VVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYLSDKAVAVICGLGVYGYTAAIEYALNY 158 (167)
T ss_dssp EEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHTTC
T ss_pred EEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccccccceEEEEeCChhhHHHHHHHHHHH
Confidence 6788888777899999998 6789998766544 55 444445677776 777777777777653
No 108
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=59.44 E-value=49 Score=27.17 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=43.4
Q ss_pred EEEEEeC-CcCHHHHHHHHHhc-CCceEE-ecCCCCHHHHhh-hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 82 EVDLYGN-GEDFNQIQEAAEKL-KIVVRV-YPGRDHADLIFH-DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 82 ~l~i~G~-g~~~~~l~~~~~~~-~l~~~v-~g~~~~~~~~~~-~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
++.|+|. |.--..+.+.+... +..+.. ....++.++++. .+|+.|-.|..+..---+..++..|+|+|+..+|
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence 5667773 65444454444433 333222 222233344554 7899997777777655556778999999987654
No 109
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=59.40 E-value=40 Score=23.10 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=60.4
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-C-CcchHHHHHHHh-----cCCeEEe
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-T-DVVCTTTAEALA-----MGKIVVC 150 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~-E~~~~~~~EAma-----~G~PVV~ 150 (287)
.++.|+.+.+. ...+.....+.+..+.........-..+. ..|+++.-.. . +.-|..+++.+. ..+|||.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 35677765433 44566666666655433322211113333 2577665332 2 345677777764 4688888
Q ss_pred ecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 151 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 151 s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
..... ...+..+..+++.. +.+++...+..++..+
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 126 (127)
T 2gkg_A 86 IGNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGFP 126 (127)
T ss_dssp EECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred EecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcCC
Confidence 72222 23445556677765 9999999999988654
No 110
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=59.39 E-value=41 Score=29.03 Aligned_cols=91 Identities=8% Similarity=0.085 Sum_probs=57.1
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCC--ceEEecCCCCHHHHhh--hCCEEE
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKI--VVRVYPGRDHADLIFH--DYKVFL 126 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~--~adv~v 126 (287)
++..+|-=.- | ..+++++. ..++++++.+-+. +.+..++.+++++. ...++ .+.++++. ..|+++
T Consensus 8 ~vgiiG~G~i--g-~~~~~~l~----~~~~~~lv~v~d~-~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~D~V~ 76 (362)
T 1ydw_A 8 RIGVMGCADI--A-RKVSRAIH----LAPNATISGVASR-SLEKAKAFATANNYPESTKIH---GSYESLLEDPEIDALY 76 (362)
T ss_dssp EEEEESCCTT--H-HHHHHHHH----HCTTEEEEEEECS-SHHHHHHHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEE
T ss_pred EEEEECchHH--H-HHHHHHHh----hCCCcEEEEEEcC-CHHHHHHHHHHhCCCCCCeee---CCHHHHhcCCCCCEEE
Confidence 5677764111 1 23445543 2467777665553 34666777777774 22333 33456776 479988
Q ss_pred cCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 127 NPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
..+....-.-.+.+|+..|++|+|-+
T Consensus 77 i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 77 VPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp ECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EcCChHHHHHHHHHHHHCCCeEEEec
Confidence 87766655566778999999999865
No 111
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=58.78 E-value=25 Score=30.01 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=53.2
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
++.++|--.- | ..+++++.. .++++++-+-+... +..++.+++++.. .+ ..+.++++. ..|+++..
T Consensus 7 rigiiG~G~i--g-~~~~~~l~~----~~~~~~~av~d~~~-~~~~~~a~~~~~~-~~---~~~~~~ll~~~~~D~V~i~ 74 (329)
T 3evn_A 7 RYGVVSTAKV--A-PRFIEGVRL----AGNGEVVAVSSRTL-ESAQAFANKYHLP-KA---YDKLEDMLADESIDVIYVA 74 (329)
T ss_dssp EEEEEBCCTT--H-HHHHHHHHH----HCSEEEEEEECSCS-STTCC---CCCCS-CE---ESCHHHHHTCTTCCEEEEC
T ss_pred EEEEEechHH--H-HHHHHHHHh----CCCcEEEEEEcCCH-HHHHHHHHHcCCC-cc---cCCHHHHhcCCCCCEEEEC
Confidence 5677774211 1 234555543 36777776654332 3344455555532 12 244456777 67998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 75 tp~~~h~~~~~~al~aGk~Vl~EKP 99 (329)
T 3evn_A 75 TINQDHYKVAKAALLAGKHVLVEKP 99 (329)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCcHHHHHHHHHHHHCCCeEEEccC
Confidence 7666555567899999999999764
No 112
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.53 E-value=57 Score=26.70 Aligned_cols=48 Identities=17% Similarity=-0.065 Sum_probs=30.1
Q ss_pred HHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 137 TTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
..++.+..|+|||..+..... ........++.+....+...+++....
T Consensus 80 ~~~~~~~~~iPvV~i~~~~~~---~~~~~V~~D~~~~~~~a~~~L~~~G~~ 127 (289)
T 3k9c_A 80 DELGALADRVPALVVARASGL---PGVGAVRGDDVAGITLAVDHLTELGHR 127 (289)
T ss_dssp HHHHHHHTTSCEEEESSCCSS---TTSEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCEEEEcCCCCC---CCCCEEEeChHHHHHHHHHHHHHCCCC
Confidence 456666669999998864321 111234455777777777888876544
No 113
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=57.93 E-value=46 Score=23.43 Aligned_cols=107 Identities=6% Similarity=0.031 Sum_probs=64.1
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHh-cCCc-eEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEK-LKIV-VRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~-~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PV 148 (287)
..+++|+.+.+. ...+...... .+.. +.........-..+.. .|++++-.. .+.-|..+++.+.. .+||
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 467788876443 4556666666 6655 3333332222234433 577765433 34567777777754 5677
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
|.... .. ...+..+..+++.. +.+++..++..++....
T Consensus 88 i~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 75433 33 33445566777765 99999999999987643
No 114
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=57.43 E-value=51 Score=23.74 Aligned_cols=103 Identities=9% Similarity=0.038 Sum_probs=61.0
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCc--eEEecCCCCHHHHhh-----------hCCEEEcCC-CCCcchHHHHHHHhc-
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIV--VRVYPGRDHADLIFH-----------DYKVFLNPS-TTDVVCTTTAEALAM- 144 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~--~~v~g~~~~~~~~~~-----------~adv~v~ps-~~E~~~~~~~EAma~- 144 (287)
.+++|+.+.+. ...+.....+.+.. +.........-+.+. ..|++++=. ..+.-|+.+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 56777766443 45667777777763 332322222224442 357766533 345567888887764
Q ss_pred ----CCeEEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 145 ----GKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 145 ----G~PVV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
++|||.... .. .+.+..+..+++.. +.+++.++|.++..
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 567665443 33 23445566777775 99999988888754
No 115
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=57.34 E-value=56 Score=28.26 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=58.5
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~p 128 (287)
+|..+|-- .-+...++.++. .++++++-+-+. +.+..++.+++++.. .++ .+.++++.. .|+++..
T Consensus 28 rvgiiG~G--~~~~~~~~~~~~-----~~~~~lvav~d~-~~~~a~~~a~~~~~~-~~~---~~~~~ll~~~~vD~V~I~ 95 (361)
T 3u3x_A 28 RFAAVGLN--HNHIYGQVNCLL-----RAGARLAGFHEK-DDALAAEFSAVYADA-RRI---ATAEEILEDENIGLIVSA 95 (361)
T ss_dssp EEEEECCC--STTHHHHHHHHH-----HTTCEEEEEECS-CHHHHHHHHHHSSSC-CEE---SCHHHHHTCTTCCEEEEC
T ss_pred EEEEECcC--HHHHHHHHHHhh-----cCCcEEEEEEcC-CHHHHHHHHHHcCCC-ccc---CCHHHHhcCCCCCEEEEe
Confidence 68888842 123344444442 267887766654 346777778877621 222 444567775 6888877
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 96 tp~~~H~~~~~~al~aGkhVl~EKP 120 (361)
T 3u3x_A 96 AVSSERAELAIRAMQHGKDVLVDKP 120 (361)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CChHHHHHHHHHHHHCCCeEEEeCC
Confidence 6655445557799999999999764
No 116
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=57.23 E-value=45 Score=23.07 Aligned_cols=102 Identities=11% Similarity=-0.071 Sum_probs=57.9
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHh-----cCCeEEeec
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MGKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma-----~G~PVV~s~ 152 (287)
++.|+.+.+. ...+.....+.+..+.........-+.+.. .|+++.=. ..+.-|+.+++.+- ..+|||.-.
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 4566655433 344555566656443322211111134433 47766533 33556788888773 357776543
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
. .. ...+..+..+++.. +.+++..++..++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3 33 23445566778775 99999999998874
No 117
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=56.22 E-value=50 Score=23.24 Aligned_cols=102 Identities=12% Similarity=0.155 Sum_probs=55.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHh--c-CCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALA--M-GKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma--~-G~PVV~s~~ 153 (287)
..+++|+.+... ...+.......+..+.........-..+. ..|++| ..+.-|+.+++.+. . .+|||.-..
T Consensus 18 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi---~~~~~g~~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 18 SMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVM---VSDKNALSFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSCCSEEE---ECSTTHHHHHHHHHHHSTTSEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCCCCEEE---EcCccHHHHHHHHHhcCCCccEEEEeC
Confidence 456666665433 34455555555544332222211113333 247777 22334566666554 3 677776543
Q ss_pred -CC----ccccccCCCeEeec---CHHHHHHHHHHHHhC
Q 023072 154 -PS----NDFFKQFPNCRTYD---DRNGFVEATLKALAE 184 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~ 184 (287)
.. ...+..+..+++.. +.+++..+|..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 95 NPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp SCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 32 33445566677653 788999999888754
No 118
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=55.94 E-value=48 Score=27.94 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=44.5
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.++++++.+-+... +..++.+++++.. ..++.+++-...|+++..+....-.-.+.+|+..|++|++-+
T Consensus 28 ~~~~~lvav~d~~~-~~~~~~~~~~g~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 28 ASDWTLQGAWSPTR-AKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp CSSEEEEEEECSSC-TTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHHHTTCEEEEES
T ss_pred CCCeEEEEEECCCH-HHHHHHHHHcCCC-----ccCcHHHhhcCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeC
Confidence 46788774444322 3445566666643 233444454568999887776665666778999999999864
No 119
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=55.15 E-value=44 Score=28.72 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=57.1
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
+|.++|-=.- |. ..+.++.+. .++++++-+-+. +.+..++.+++++. .++ .+.++++. ..|+++..
T Consensus 15 rvgiiG~G~~--g~-~~~~~l~~~---~~~~~lvav~d~-~~~~~~~~~~~~~~--~~~---~~~~~ll~~~~~D~V~i~ 82 (354)
T 3q2i_A 15 RFALVGCGRI--AN-NHFGALEKH---ADRAELIDVCDI-DPAALKAAVERTGA--RGH---ASLTDMLAQTDADIVILT 82 (354)
T ss_dssp EEEEECCSTT--HH-HHHHHHHHT---TTTEEEEEEECS-SHHHHHHHHHHHCC--EEE---SCHHHHHHHCCCSEEEEC
T ss_pred eEEEEcCcHH--HH-HHHHHHHhC---CCCeEEEEEEcC-CHHHHHHHHHHcCC--cee---CCHHHHhcCCCCCEEEEC
Confidence 5777774211 11 234444332 267877755443 34667777777774 333 34456776 67988887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 83 tp~~~h~~~~~~al~~gk~v~~EKP 107 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEAGFHVMTEKP 107 (354)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSS
T ss_pred CCcHHHHHHHHHHHHCCCCEEEeCC
Confidence 7665555567889999999999765
No 120
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=54.22 E-value=44 Score=28.77 Aligned_cols=91 Identities=15% Similarity=0.131 Sum_probs=57.3
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
++.++|-=.. |...++.++.. .++++++-+-+. +.+..++.+++++.. .+ .+.++++. ..|+++..
T Consensus 29 rigiIG~G~~--g~~~~~~~l~~----~~~~~l~av~d~-~~~~~~~~a~~~g~~--~~---~~~~~ll~~~~~D~V~i~ 96 (350)
T 3rc1_A 29 RVGVIGCADI--AWRRALPALEA----EPLTEVTAIASR-RWDRAKRFTERFGGE--PV---EGYPALLERDDVDAVYVP 96 (350)
T ss_dssp EEEEESCCHH--HHHTHHHHHHH----CTTEEEEEEEES-SHHHHHHHHHHHCSE--EE---ESHHHHHTCTTCSEEEEC
T ss_pred EEEEEcCcHH--HHHHHHHHHHh----CCCeEEEEEEcC-CHHHHHHHHHHcCCC--Cc---CCHHHHhcCCCCCEEEEC
Confidence 6788874211 11123444432 467887755433 346677777877754 22 34456776 47998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 97 tp~~~h~~~~~~al~aGk~Vl~EKP 121 (350)
T 3rc1_A 97 LPAVLHAEWIDRALRAGKHVLAEKP 121 (350)
T ss_dssp CCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCcHHHHHHHHHHHHCCCcEEEeCC
Confidence 7666555567799999999998764
No 121
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=54.06 E-value=54 Score=23.00 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=55.1
Q ss_pred eEEEEE-eCCcC----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeec
Q 023072 81 LEVDLY-GNGED----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCAN 152 (287)
Q Consensus 81 ~~l~i~-G~g~~----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~ 152 (287)
.+++++ |.|-. ...+++.+++.++.+.+. -.....+..+..+|+++........ ..-++..+ .|+||+.-+
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~I~ 83 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEIIN 83 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEECC
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEEEC
Confidence 344444 66543 457888888888876663 4445555567889999887654332 33444433 589998653
Q ss_pred CCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 153 HPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
. ..+.. -|.+++.+.+.+++..
T Consensus 84 ~--~~y~~--------~d~~~vl~~i~~~l~~ 105 (109)
T 2l2q_A 84 T--IDYGT--------MNGEKVLQLAINAFNN 105 (109)
T ss_dssp H--HHHHH--------TCHHHHHHHHHHHHHH
T ss_pred h--HHhcc--------CCHHHHHHHHHHHHhc
Confidence 2 11110 1567777777766653
No 122
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=53.86 E-value=55 Score=23.09 Aligned_cols=107 Identities=11% Similarity=-0.010 Sum_probs=59.2
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHh---cCCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA---MGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma---~G~PVV~s~~ 153 (287)
..+++|+.+.+. ...+.....+.+..+.........-..+.. .|+++.-...+.-|..+++.+. ..+|||.-..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 346677765433 445666666666544333222111133333 4776654423334566666553 3677776543
Q ss_pred -CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 154 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
.. ...+..+..+++.. +.+++..++..++....
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 84 YVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp CCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 32 23445556667765 99999999999988644
No 123
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=53.53 E-value=52 Score=27.95 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=47.0
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+++++-+.+. +.+..++.+++++.. +++ .+.++++. ..|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 28 ~~~l~av~d~-~~~~a~~~a~~~~~~-~~~---~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP 98 (334)
T 3ohs_X 28 EHQVVAVAAR-DLSRAKEFAQKHDIP-KAY---GSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKP 98 (334)
T ss_dssp TEEEEEEECS-SHHHHHHHHHHHTCS-CEE---SSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CeEEEEEEcC-CHHHHHHHHHHcCCC-ccc---CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECC
Confidence 4566655543 456777788887753 222 34456777 579988877665545557789999999999874
No 124
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=53.40 E-value=55 Score=22.93 Aligned_cols=105 Identities=7% Similarity=-0.037 Sum_probs=61.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHhc---CCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALAM---GKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma~---G~PVV~s~ 152 (287)
..+++|+.+... ...+.+...+.+..+............+. ..|++++-.. .+.-|+.+++.+.. .+|||...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 356777766443 44566666654434333332222213333 3577766433 35567777776643 67777654
Q ss_pred CC-C----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 HP-S----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~~-~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. . .+.+..+..+++.. +.+++.+++.+++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 42 2 23455566777765 999999999998864
No 125
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=53.24 E-value=70 Score=26.96 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=45.5
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
++++++.+-+. +.+..++.+++++.. ....+.++++. ..|+++..+....-.-.+.+|+..|++|++-+
T Consensus 23 ~~~~~vav~d~-~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ek 93 (332)
T 2glx_A 23 TGGEVVSMMST-SAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEK 93 (332)
T ss_dssp TTCEEEEEECS-CHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CCCeEEEEECC-CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeC
Confidence 56776644443 345666677776642 12344456776 48998887776655566778999999999854
No 126
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=52.74 E-value=17 Score=30.84 Aligned_cols=43 Identities=14% Similarity=0.068 Sum_probs=32.3
Q ss_pred CCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 113 DHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 113 ~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++.++++..+|+.|-.|..+..---+..++..|+|+|...+|-
T Consensus 80 ~dl~~ll~~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 80 DDPESAFSNTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp SCHHHHTTSCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CCHHHHhcCCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3455788899999987766665445667899999999876653
No 127
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=51.95 E-value=29 Score=31.06 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=56.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCce-EEecCCCCHHHHhh--hCCEEEc
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVV-RVYPGRDHADLIFH--DYKVFLN 127 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~-~v~g~~~~~~~~~~--~adv~v~ 127 (287)
+|.++|-=.. |...+++++. ..++++++-+-+. +.+..++.+++++... .+. ...+.++++. ..|+++.
T Consensus 85 rigiIG~G~~--g~~~~~~~l~----~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~-~~~~~~~ll~~~~vD~V~i 156 (433)
T 1h6d_A 85 GYAIVGLGKY--ALNQILPGFA----GCQHSRIEALVSG-NAEKAKIVAAEYGVDPRKIY-DYSNFDKIAKDPKIDAVYI 156 (433)
T ss_dssp EEEEECCSHH--HHHTHHHHTT----TCSSEEEEEEECS-CHHHHHHHHHHTTCCGGGEE-CSSSGGGGGGCTTCCEEEE
T ss_pred EEEEECCcHH--HHHHHHHHHh----hCCCcEEEEEEcC-CHHHHHHHHHHhCCCccccc-ccCCHHHHhcCCCCCEEEE
Confidence 5777774111 1112344432 2467777655543 3456677777777531 011 1233445666 6799888
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeec
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+....-.-.+.+|+..|++|+|-.
T Consensus 157 atp~~~h~~~~~~al~aGk~Vl~EK 181 (433)
T 1h6d_A 157 ILPNSLHAEFAIRAFKAGKHVMCEK 181 (433)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECS
T ss_pred cCCchhHHHHHHHHHHCCCcEEEcC
Confidence 7776666666788999999999865
No 128
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=51.55 E-value=42 Score=28.74 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=56.6
Q ss_pred cEEEEEec-ccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEc
Q 023072 51 GAYYIGKM-VWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLN 127 (287)
Q Consensus 51 ~i~~vG~~-~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ 127 (287)
++..+|-= ...+ ..+.++..+ .++++++-+-+. +.+..++.+++++.. .++ .+.++++. ..|+++.
T Consensus 20 rvgiIG~G~~~g~---~~~~~l~~~---~~~~~lvav~d~-~~~~~~~~a~~~~~~-~~~---~~~~~ll~~~~vD~V~i 88 (340)
T 1zh8_A 20 RLGIVGCGIAARE---LHLPALKNL---SHLFEITAVTSR-TRSHAEEFAKMVGNP-AVF---DSYEELLESGLVDAVDL 88 (340)
T ss_dssp EEEEECCSHHHHH---THHHHHHTT---TTTEEEEEEECS-SHHHHHHHHHHHSSC-EEE---SCHHHHHHSSCCSEEEE
T ss_pred eEEEEecCHHHHH---HHHHHHHhC---CCceEEEEEEcC-CHHHHHHHHHHhCCC-ccc---CCHHHHhcCCCCCEEEE
Confidence 67778742 1112 233343221 267777666553 346677778877742 333 34456776 4688888
Q ss_pred CCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 128 PSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 128 ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.+....-.-.+.+|+..|++|+|-+.
T Consensus 89 ~tp~~~H~~~~~~al~aGkhVl~EKP 114 (340)
T 1zh8_A 89 TLPVELNLPFIEKALRKGVHVICEKP 114 (340)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred eCCchHHHHHHHHHHHCCCcEEEeCC
Confidence 77665545566789999999999764
No 129
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=51.52 E-value=65 Score=23.16 Aligned_cols=107 Identities=11% Similarity=-0.068 Sum_probs=57.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhc-CC-ceEEecCCCCHHHHhhh---CCEEEcCCC-CCcchHHHHHHHh---cCCeEE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKL-KI-VVRVYPGRDHADLIFHD---YKVFLNPST-TDVVCTTTAEALA---MGKIVV 149 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~-~l-~~~v~g~~~~~~~~~~~---adv~v~ps~-~E~~~~~~~EAma---~G~PVV 149 (287)
..+++|+.+.+. ...+....... +. .+.........-..+.. .|+++.-.. .+.-|+.+++.+. .++|||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 356777766443 45566666665 43 22222222222244443 577765433 2334666666654 367877
Q ss_pred eecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 150 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 150 ~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
.-.. .. ...+..+..+++.. +.+++..+|..++....
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~ 126 (154)
T 2qsj_A 83 LISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI 126 (154)
T ss_dssp EC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 6543 22 33445556667665 99999999999988644
No 130
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=50.08 E-value=97 Score=26.22 Aligned_cols=91 Identities=20% Similarity=0.188 Sum_probs=55.1
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
+|.++|-=.- | ...+.++. +..++++++.+-+. +.+..++.+++++.. .++ .+.++++. ..|+++..
T Consensus 10 ~v~iiG~G~i--g-~~~~~~l~---~~~~~~~~vav~d~-~~~~~~~~a~~~g~~-~~~---~~~~~~l~~~~~D~V~i~ 78 (346)
T 3cea_A 10 RAAIIGLGRL--G-ERHARHLV---NKIQGVKLVAACAL-DSNQLEWAKNELGVE-TTY---TNYKDMIDTENIDAIFIV 78 (346)
T ss_dssp EEEEECCSTT--H-HHHHHHHH---HTCSSEEEEEEECS-CHHHHHHHHHTTCCS-EEE---SCHHHHHTTSCCSEEEEC
T ss_pred eEEEEcCCHH--H-HHHHHHHH---hcCCCcEEEEEecC-CHHHHHHHHHHhCCC-ccc---CCHHHHhcCCCCCEEEEe
Confidence 5777774111 2 12334432 13467777655443 345666677777642 333 33446776 58998887
Q ss_pred CCCCcchHHHHHHHhcCCeEEeec
Q 023072 129 STTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+....-.-.+.+|+..|++|++-+
T Consensus 79 tp~~~h~~~~~~al~~G~~v~~eK 102 (346)
T 3cea_A 79 APTPFHPEMTIYAMNAGLNVFCEK 102 (346)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CChHhHHHHHHHHHHCCCEEEEcC
Confidence 766555556678999999999854
No 131
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=49.88 E-value=65 Score=22.70 Aligned_cols=106 Identities=8% Similarity=-0.105 Sum_probs=62.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhhh-------CCEEEcCCC-CCcchHHHHHHHhc----
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHD-------YKVFLNPST-TDVVCTTTAEALAM---- 144 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~-------adv~v~ps~-~E~~~~~~~EAma~---- 144 (287)
..+++|+.+.+. ...+.......+....+....+-.+ ..+.. .|++++-.. .+.-|+.+++.+..
T Consensus 9 ~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~ 88 (146)
T 3ilh_A 9 IDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQP 88 (146)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGG
T ss_pred cceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhh
Confidence 456777766443 4456666666665223321112222 44443 587766433 35567777777654
Q ss_pred ---CCeEEeecC-CC----ccccccC-CCeEeec--CHHHHHHHHHHHHhCC
Q 023072 145 ---GKIVVCANH-PS----NDFFKQF-PNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 145 ---G~PVV~s~~-~~----~e~i~~~-~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.+|+|.... .. ...+..+ ..+++.. +.++|.++|.+.....
T Consensus 89 ~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 89 MKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred ccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 667765544 32 2334444 5677775 9999999999988754
No 132
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=49.36 E-value=24 Score=27.08 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHhhhCCEEEcC-C-CCCcchHHHHHHHhcCCeEEeecCCC-----ccccccCC-----CeEeecCHHHHHHHHHHHHhC
Q 023072 117 LIFHDYKVFLNP-S-TTDVVCTTTAEALAMGKIVVCANHPS-----NDFFKQFP-----NCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 117 ~~~~~adv~v~p-s-~~E~~~~~~~EAma~G~PVV~s~~~~-----~e~i~~~~-----~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+.+..||++|.- . ...|...-+-=|.+.|+|||+-.... +-.+.... ..+.| |.+++...|...+..
T Consensus 73 ~~i~~aD~vva~~~~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~~g~~~~~~~~~~~y-~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDY-AEGEVETMLDRYFEA 151 (165)
T ss_dssp HHHHHCSEEEEECSSCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHHHHTCCSSSEEEEEC-CTTTHHHHHHHHHHT
T ss_pred HHHHhCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhhcccCccceeEEEec-CHHHHHHHHHHHHHh
Confidence 789999998752 2 12334444556889999999964322 11221111 12334 777777777777664
No 133
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=48.80 E-value=52 Score=21.94 Aligned_cols=102 Identities=12% Similarity=0.009 Sum_probs=54.2
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHh-----cCCeEEeec
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA-----MGKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma-----~G~PVV~s~ 152 (287)
+++|+.+.+. ...+.......+..+............+. ..|+++.-. ..+.-+..+++.+. ..+|+|...
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4566665433 44566666666654433332211113333 247766533 23445677777775 456766543
Q ss_pred C-CC-ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 153 H-PS-NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 153 ~-~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
. .. ...+..+..+++.. +.+++...+..++.
T Consensus 83 ~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 3 22 23333444556654 88888888877654
No 134
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=48.69 E-value=68 Score=22.62 Aligned_cols=105 Identities=9% Similarity=0.008 Sum_probs=60.1
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCC--ceEEecCCCCHHHHhh------------hCCEEEcCCC-CCcchHHHHHHHh
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH------------DYKVFLNPST-TDVVCTTTAEALA 143 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~------------~adv~v~ps~-~E~~~~~~~EAma 143 (287)
..+++|+.+.+. ...+.....+.+. .+.........-..+. ..|+++.=.. .+.-|+.+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 345677765433 4556666666665 3222222222224443 3577765433 3446777887775
Q ss_pred -----cCCeEEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 144 -----MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 144 -----~G~PVV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
..+|||.... .. ...+..+..+++.. +.+++...+..++..
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 138 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKY 138 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 4567665433 33 33445566777765 999999998887653
No 135
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=47.75 E-value=1.1e+02 Score=26.22 Aligned_cols=79 Identities=9% Similarity=0.074 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecC---------------CCCHHHHhhhCCEEEcCCC
Q 023072 66 ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG---------------RDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~---------------~~~~~~~~~~adv~v~ps~ 130 (287)
.+++++. .+|+++++-+.+.. .+....+++..+.. ++|. ..+.++++...|+.+..+-
T Consensus 16 ~~~r~l~----~~~~~elvav~d~~-~~~~~~~~~~~g~~--~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp 88 (334)
T 2czc_A 16 RVAYAVT----KQDDMELIGITKTK-PDFEAYRAKELGIP--VYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATP 88 (334)
T ss_dssp HHHHHHH----TCTTEEEEEEEESS-CSHHHHHHHHTTCC--EEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCS
T ss_pred HHHHHHh----cCCCCEEEEEEcCC-HHHHHHHHHhcCcc--ccccccccceeccCCceEEcCcHHHhccCCCEEEECCC
Confidence 3555553 35788887776543 34555566655533 2221 1233467778899887765
Q ss_pred CCc-chHHHHHHHhcCCeEEeec
Q 023072 131 TDV-VCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 131 ~E~-~~~~~~EAma~G~PVV~s~ 152 (287)
... +.. ...++..|++||++.
T Consensus 89 ~~~h~~~-a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 89 GGIGAKN-KPLYEKAGVKAIFQG 110 (334)
T ss_dssp TTHHHHH-HHHHHHHTCEEEECT
T ss_pred ccccHHH-HHHHHHcCCceEeec
Confidence 443 333 347888999999874
No 136
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=47.73 E-value=75 Score=22.84 Aligned_cols=104 Identities=9% Similarity=-0.017 Sum_probs=59.4
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeecC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 153 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~~ 153 (287)
.+++|+.+.+. ...+.......+..+............+. ..|++++-.. .+.-|..+++.+. ..+|||....
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 46777766443 45566666666655433322111112222 2477665333 3445666666653 3677776543
Q ss_pred -CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. ...+..+..+++.. +.+++...+..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 84 HGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp GGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 22 33445566777765 999999999998764
No 137
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=47.71 E-value=1.2e+02 Score=26.63 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=48.5
Q ss_pred cCCeEEEE-EeCCcCHHHHHHHHHhcCCce-EEecCCCCHHHHhhh-------CCEEEcCCCCCcchHHHHHHHhcCCeE
Q 023072 78 LAGLEVDL-YGNGEDFNQIQEAAEKLKIVV-RVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIV 148 (287)
Q Consensus 78 ~~~~~l~i-~G~g~~~~~l~~~~~~~~l~~-~v~g~~~~~~~~~~~-------adv~v~ps~~E~~~~~~~EAma~G~PV 148 (287)
.++++++. +-+ .+.+..++.+++++... ++ +.+.++++.. .|+++..+....-.-.+.+|+..|++|
T Consensus 62 ~~~~~lva~v~d-~~~~~a~~~a~~~g~~~~~~---~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhV 137 (417)
T 3v5n_A 62 DDHYELVAGALS-STPEKAEASGRELGLDPSRV---YSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHV 137 (417)
T ss_dssp TSCEEEEEEECC-SSHHHHHHHHHHHTCCGGGB---CSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEEEeC-CCHHHHHHHHHHcCCCcccc---cCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeE
Confidence 35677663 333 24567777888877531 12 3445567776 798888777665556678899999999
Q ss_pred EeecC
Q 023072 149 VCANH 153 (287)
Q Consensus 149 V~s~~ 153 (287)
+|-+.
T Consensus 138 l~EKP 142 (417)
T 3v5n_A 138 ICDKP 142 (417)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 99765
No 138
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=47.67 E-value=71 Score=22.51 Aligned_cols=105 Identities=9% Similarity=-0.038 Sum_probs=59.8
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeEEee
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVVCA 151 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PVV~s 151 (287)
.+++|+.+.+. ...+.......+..+.........-+.+.. .|++++=.. .+.-|+.+++.+-. .+|||..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 46677765433 345556666666443322211111133332 477665333 35567777777643 5677654
Q ss_pred cC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 152 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 152 ~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.. .. .+.+..+..+++.. +.+++..++..++...
T Consensus 85 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 85 TAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp ECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 43 33 23455566778876 9999999999998753
No 139
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=47.45 E-value=76 Score=22.80 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=56.9
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHh---cCCeEEeecC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 153 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~~ 153 (287)
.+++|+.+.+. ...+.....+.+..+.........-..+.. .|++|+-.. .+.-|+.+++.+. ..+|||.-..
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 46666655332 344555555555433222221111133332 466665333 3445666666654 4677776544
Q ss_pred CC-----ccccccC-CCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 PS-----NDFFKQF-PNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 ~~-----~e~i~~~-~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .+.+..+ ..+++.. +.++|..+|..++..
T Consensus 95 ~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 95 DPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 32 2344555 5677765 999999999998874
No 140
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=46.49 E-value=49 Score=23.43 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=43.6
Q ss_pred CeEEEE-EeCCcC----HHHHHHHHHhcCCceEEec-CCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEee
Q 023072 80 GLEVDL-YGNGED----FNQIQEAAEKLKIVVRVYP-GRDHADLIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCA 151 (287)
Q Consensus 80 ~~~l~i-~G~g~~----~~~l~~~~~~~~l~~~v~g-~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s 151 (287)
..++.+ ++.|-. -..+++.+++.++.+.+.. .....++.+..+|++++.... .|-..=++..+ .|+||..-
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI 84 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVAT 84 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEe
Confidence 344444 455543 3568888888998887752 233334567889998874332 12233344444 48999876
Q ss_pred c
Q 023072 152 N 152 (287)
Q Consensus 152 ~ 152 (287)
+
T Consensus 85 ~ 85 (108)
T 3nbm_A 85 R 85 (108)
T ss_dssp C
T ss_pred C
Confidence 5
No 141
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=46.39 E-value=58 Score=27.70 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=48.9
Q ss_pred cCCeEEEEEeCCc---CHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 78 LAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 78 ~~~~~l~i~G~g~---~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.++++++-+-+.. ..+.+.+..++++....++ .+.++++.. .|+++..+....-.-.+.+|+..|++|+|-+
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EK 98 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKY---NNWWEMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEK 98 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEEC---SSHHHHHHHHCCSEEEECSSHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCccc---CCHHHHhcCCCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeC
Confidence 4788888776543 2346666666666543433 445567765 6888877655544456789999999999876
Q ss_pred C
Q 023072 153 H 153 (287)
Q Consensus 153 ~ 153 (287)
.
T Consensus 99 P 99 (337)
T 3ip3_A 99 P 99 (337)
T ss_dssp S
T ss_pred C
Confidence 4
No 142
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=46.16 E-value=54 Score=28.82 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=61.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcC----CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCE
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELA----GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKV 124 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~----~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv 124 (287)
+|..||-=...+ ..++++.++....+ +++++-+.+. +.+..++.+++++.. +++ .+.++++.. .|+
T Consensus 28 rvgiIG~G~ig~---~h~~~~~~~~~~~~~~~~~~elvav~d~-~~~~a~~~a~~~~~~-~~y---~d~~~ll~~~~vD~ 99 (412)
T 4gqa_A 28 NIGLIGSGFMGQ---AHADAYRRAAMFYPDLPKRPHLYALADQ-DQAMAERHAAKLGAE-KAY---GDWRELVNDPQVDV 99 (412)
T ss_dssp EEEEECCSHHHH---HHHHHHHHHHHHCTTSSSEEEEEEEECS-SHHHHHHHHHHHTCS-EEE---SSHHHHHHCTTCCE
T ss_pred eEEEEcCcHHHH---HHHHHHHhccccccccCCCeEEEEEEcC-CHHHHHHHHHHcCCC-eEE---CCHHHHhcCCCCCE
Confidence 677777421112 34566665543332 4566555543 457788888888854 343 344567764 578
Q ss_pred EEcCCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 125 FLNPSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 125 ~v~ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
++..+....-.-.+++|+..|++|+|-+.-
T Consensus 100 V~I~tp~~~H~~~~~~al~aGkhVl~EKP~ 129 (412)
T 4gqa_A 100 VDITSPNHLHYTMAMAAIAAGKHVYCEKPL 129 (412)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESCS
T ss_pred EEECCCcHHHHHHHHHHHHcCCCeEeecCC
Confidence 777766666566788999999999998753
No 143
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=46.08 E-value=59 Score=22.87 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=59.7
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhhh--CCEEEcCCC-CC--cchHHHHHHHhc---CCeE
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TD--VVCTTTAEALAM---GKIV 148 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~--adv~v~ps~-~E--~~~~~~~EAma~---G~PV 148 (287)
.+++|+.+.+. ...+.....+.+..+.... ..+ ..+.. .|++++-.. .+ .-|+.+++.+.. .+||
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFA---SAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---CHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 56777766443 4456666666554433222 222 22222 366665332 34 456777776653 5677
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
|.-.. .. .+.+..+..+++.. +.+++..++.+++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 65443 32 33455666777775 9999999999988753
No 144
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=45.88 E-value=93 Score=26.30 Aligned_cols=90 Identities=13% Similarity=0.007 Sum_probs=52.8
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~p 128 (287)
+|.++|--. -+...++.++. .++++++-+-+.. .+..++.+++++. .. ...+.++++. ..|+++..
T Consensus 6 rvgiiG~G~--~~~~~~~~~l~-----~~~~~lvav~d~~-~~~~~~~a~~~~~-~~---~~~~~~~ll~~~~~D~V~i~ 73 (336)
T 2p2s_A 6 RFAAIGLAH--NHIYDMCQQLI-----DAGAELAGVFESD-SDNRAKFTSLFPS-VP---FAASAEQLITDASIDLIACA 73 (336)
T ss_dssp EEEEECCSS--THHHHHHHHHH-----HTTCEEEEEECSC-TTSCHHHHHHSTT-CC---BCSCHHHHHTCTTCCEEEEC
T ss_pred EEEEECCCh--HHHHHhhhhhc-----CCCcEEEEEeCCC-HHHHHHHHHhcCC-Cc---ccCCHHHHhhCCCCCEEEEe
Confidence 577777411 12223444442 2578876554433 2444556666642 11 2344556776 47888877
Q ss_pred CCCCcchHHHHHHHhcCCeEEeec
Q 023072 129 STTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+....-.-.+.+|+..|++|+|-+
T Consensus 74 tp~~~h~~~~~~al~aGkhVl~EK 97 (336)
T 2p2s_A 74 VIPCDRAELALRTLDAGKDFFTAK 97 (336)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECS
T ss_pred CChhhHHHHHHHHHHCCCcEEEeC
Confidence 665554556678999999999965
No 145
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=45.88 E-value=80 Score=22.59 Aligned_cols=105 Identities=8% Similarity=-0.019 Sum_probs=58.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhhh--CCEEEcCCC-CCcchHHHHHHHhc---CCeEE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVV 149 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~--adv~v~ps~-~E~~~~~~~EAma~---G~PVV 149 (287)
..+++|+.+... ...+.......+....+. .....+ ..+.. .|++++-.. .+.-|+.+++.+.. .+|||
T Consensus 20 m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~-~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii 98 (150)
T 4e7p_A 20 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVL-QAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVV 98 (150)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEE-EESSHHHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCcEEEE-EECCHHHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEE
Confidence 356667765332 344555555444222222 112222 33332 466665433 35567777776643 56666
Q ss_pred eecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 150 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 150 ~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.-.. .. .+.+..+..+++.. +.+++.++|..++...
T Consensus 99 ~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 141 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGR 141 (150)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCC
Confidence 5443 33 33555666777775 9999999999998764
No 146
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=45.51 E-value=1.3e+02 Score=25.79 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=44.7
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++-+-+.. .+..+ .+++++.. .+.+.++++. ..|+++..+....-.-.+.+|+..|++|+|-+.
T Consensus 27 ~~~~~l~av~d~~-~~~~~-~a~~~g~~-----~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP 97 (359)
T 3e18_A 27 ADNLEVHGVFDIL-AEKRE-AAAQKGLK-----IYESYEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKP 97 (359)
T ss_dssp STTEEEEEEECSS-HHHHH-HHHTTTCC-----BCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCcEEEEEEcCC-HHHHH-HHHhcCCc-----eeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCC
Confidence 4678877555433 23333 45555532 2345556777 678888877665555567799999999998764
No 147
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=45.27 E-value=81 Score=22.47 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=58.3
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHh-------cCCeE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA-------MGKIV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma-------~G~PV 148 (287)
..++.|+.+.+. ...+.....+.+..+.........-+.+.. .|++++=. ..+.-|+.+++.+- -.+||
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pi 93 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 93 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeE
Confidence 467788876443 445666666666544333221111134433 47776533 33556777777764 13576
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
|.... .. .+.+..+..+++.. +.+++.+++..+...
T Consensus 94 i~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 94 VVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 66544 32 23445566778876 999999999988654
No 148
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=45.09 E-value=83 Score=22.57 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=59.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHh---cCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
..+++|+.+.+. ...+.......+..+.........-..+.. .|++|+-.. .+.-|+.+++.+. ..+|||.-.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 567778866443 455666666666544333222211134433 477765332 3445666666653 367777654
Q ss_pred C-CC----ccccccC-CCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQF-PNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~-~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+ ..+++.. +.+++..+|..++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 87 GYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 4 22 2233444 5677765 999999999888753
No 149
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=44.60 E-value=1.3e+02 Score=26.24 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCeEEEE-EeCCcCHHHHHHHHHhcCCce-EEecCCCCHHHHhhh-------CCEEEcCCCCCcchHHHHHHHhcCCeEE
Q 023072 79 AGLEVDL-YGNGEDFNQIQEAAEKLKIVV-RVYPGRDHADLIFHD-------YKVFLNPSTTDVVCTTTAEALAMGKIVV 149 (287)
Q Consensus 79 ~~~~l~i-~G~g~~~~~l~~~~~~~~l~~-~v~g~~~~~~~~~~~-------adv~v~ps~~E~~~~~~~EAma~G~PVV 149 (287)
++++++- +-+ .+.+..++.+++++... ++ +.+.++++.. .|+++..+-...-.-.+.+|+..|++|+
T Consensus 38 ~~~~lva~v~d-~~~~~a~~~a~~~g~~~~~~---~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl 113 (398)
T 3dty_A 38 NTFVLVAGAFD-IDPIRGSAFGEQLGVDSERC---YADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVV 113 (398)
T ss_dssp GSEEEEEEECC-SSHHHHHHHHHHTTCCGGGB---CSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEEEeC-CCHHHHHHHHHHhCCCccee---eCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 5666653 323 34567777888887531 12 3444567765 7998877666555566789999999999
Q ss_pred eecC
Q 023072 150 CANH 153 (287)
Q Consensus 150 ~s~~ 153 (287)
|-+.
T Consensus 114 ~EKP 117 (398)
T 3dty_A 114 CEKP 117 (398)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 9653
No 150
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=44.28 E-value=1e+02 Score=23.37 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=40.0
Q ss_pred CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---ccccc------cCCCeEeec-CHHHHHHHHHHHH
Q 023072 123 KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFFK------QFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i~------~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
.+.++|.-+-..+.++.+|+ +.++|+|=-.... +|.+. +...|.++. -.+...-++..++
T Consensus 76 giiINpgA~THtSvAlrDAl~~~~~P~VEVHiSNi~aRE~FRh~S~~s~~a~GvI~G~G~~gY~lAl~~~~ 146 (153)
T 3lwz_A 76 FILINPAAFTHTSVALRDALLGVQIPFIEIHLSNVHAREPFRHHSYLSDIAVGVICGLGADGYNFALQAAV 146 (153)
T ss_dssp EEEEECGGGGGTCHHHHHHHHHHTCCEEEEESSCGGGSCGGGGCCSSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred eEEEccccceechHHHHHHHHhcCCCEEEEEcCCccccchhhhcccccccceEEEEecChhHHHHHHHHHH
Confidence 36788888877899999998 6789999766644 55443 334566665 5555555554443
No 151
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=43.98 E-value=1.4e+02 Score=27.04 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=68.6
Q ss_pred EEEEEec----ccccCHHHHHHHHHH-HHHh-cC-------------CeEEEEEeCC---cCHHHHHHHHHhcCCceEE-
Q 023072 52 AYYIGKM----VWSKGYKELLELLDD-HQKE-LA-------------GLEVDLYGNG---EDFNQIQEAAEKLKIVVRV- 108 (287)
Q Consensus 52 i~~vG~~----~~~Kg~~~ll~a~~~-l~~~-~~-------------~~~l~i~G~g---~~~~~l~~~~~~~~l~~~v- 108 (287)
|+++..- ....|++..++++-+ +... .| .-.+.|+|.- .|..+++++.+++|+.+..
T Consensus 156 Vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL~~~Gi~v~~~ 235 (483)
T 3pdi_A 156 VIPVDSAGFYGTKNLGNRIAGEAMLKYVIGTREPDPLPVGSERPGIRVHDVNLIGEYNIAGEFWHVLPLLDELGLRVLCT 235 (483)
T ss_dssp EEEECCCGGGCCHHHHHHHHHHHTHHHHTTSSCCCCCCTTCCSSSCCCEEEEEESCCCBTTGGGGTHHHHHHHTEEEEEE
T ss_pred EEEEeCCCcccchhhHHHHHHHHHHHHHhhccCccccCcccccccCCCCeEEEEcCCCChhHHHHHHHHHHHCCCcEEEE
Confidence 5555432 344577777776543 3211 11 1468888863 2457899999999988763
Q ss_pred ec-CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHH--hcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 109 YP-GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 109 ~g-~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAm--a~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
++ +....+ .-+..|++-|.... .++..+.+.| -+|+|.+... + + | +.+.+++.+.|.+++..
T Consensus 236 ~~gg~~~~el~~~~~A~~niv~~~--~~~~~~A~~Le~~~GiP~i~~~-p----~-----G--i~~T~~~L~~ia~~~g~ 301 (483)
T 3pdi_A 236 LAGDARYREVQTMHRAEVNMMVCS--KAMLNVARKLQETYGTPWFEGS-F----Y-----G--ITDTSQALRDFARLLDD 301 (483)
T ss_dssp ETSSBCHHHHTTGGGCSEEEEESC--CTTHHHHHHHHHHHCCCEEEEC-S----S-----S--HHHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHhhhcCCEEEEEch--hhHHHHHHHHHHHhCCCEeecC-C----C-----C--HHHHHHHHHHHHHHhCC
Confidence 43 344444 44555666554322 2345666666 4799988542 1 1 1 12467777777777653
No 152
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=43.76 E-value=1e+02 Score=23.18 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHHh-cCCeEEeecCCC---cccc---
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEALA-MGKIVVCANHPS---NDFF--- 159 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAma-~G~PVV~s~~~~---~e~i--- 159 (287)
.+++.+.+++..+.++..-...+ +.++.| .+.++|.-+-..+..+.+|++ .++|+|=-.... +|.+
T Consensus 35 ~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~ 114 (146)
T 1h05_A 35 LIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRH 114 (146)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGGGGTCHHHHHHHHTCCSCEEEEESSCGGGSCGGGGC
T ss_pred HHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhCCCCEEEEEecCcccccccccc
Confidence 45556666776666653322222 333333 478899888888999999984 688999766544 5544
Q ss_pred ---ccCCCeEeec-CHHHHHHHHHHHHh
Q 023072 160 ---KQFPNCRTYD-DRNGFVEATLKALA 183 (287)
Q Consensus 160 ---~~~~~g~l~~-d~~~l~~~i~~ll~ 183 (287)
.+...|.++. -.+...-++..++.
T Consensus 115 S~~s~~a~GvI~G~G~~gY~lAl~~~~~ 142 (146)
T 1h05_A 115 SYLSPIATGVIVGLGIQGYLLALRYLAE 142 (146)
T ss_dssp CSSGGGSSEEEESSTTHHHHHHHHHHHH
T ss_pred cccccceeEEEEecCHHHHHHHHHHHHH
Confidence 3344666765 66666666666553
No 153
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=43.66 E-value=79 Score=21.89 Aligned_cols=106 Identities=12% Similarity=0.001 Sum_probs=61.4
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceE-EecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeec
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVR-VYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~-v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
.+++|+.+.+. ...+.....+.+..+. ........-..+. ..|+++.-.. .+.-|+.+++.+- ..+|||.-.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 46677765443 4556666666664332 2233333323332 3577665433 3556777777664 356666543
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
. .. .+.+..+..+++.. +.+++.+++..++....
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 82 AKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp CC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred CCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 3 22 33455566777775 99999999999987644
No 154
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=43.58 E-value=81 Score=22.00 Aligned_cols=106 Identities=12% Similarity=-0.024 Sum_probs=61.2
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEE-ecCCCCHHHHhh--hCCEEEcCCCC--CcchHHHHHHHh--cCCeEEe
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRV-YPGRDHADLIFH--DYKVFLNPSTT--DVVCTTTAEALA--MGKIVVC 150 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v-~g~~~~~~~~~~--~adv~v~ps~~--E~~~~~~~EAma--~G~PVV~ 150 (287)
...+++|+.+.+. ...+.....+.+..+.. ..........+. ..|++++-... +.-|..+++.+. ..+|||.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ 87 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIF 87 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 3567788866443 45566666666655432 222222213333 35777764332 345566665554 4778776
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
-.. .. ...+..+..+++.. +.+++..++..++..
T Consensus 88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 543 33 23445566677765 999999999988764
No 155
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=43.23 E-value=1.4e+02 Score=26.40 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=55.6
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHH---hcCCc-eEEec-CCCCHHHHhh--hCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAE---KLKIV-VRVYP-GRDHADLIFH--DYK 123 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~---~~~l~-~~v~g-~~~~~~~~~~--~ad 123 (287)
+|..+|-=.. |. ..+.++. ..++++++-+-+.. .+..++.++ +++.. ..++. ..++.++++. ..|
T Consensus 22 rvgiIG~G~~--g~-~h~~~l~----~~~~~~lvav~d~~-~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD 93 (444)
T 2ixa_A 22 RIAFIAVGLR--GQ-THVENMA----RRDDVEIVAFADPD-PYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNID 93 (444)
T ss_dssp EEEEECCSHH--HH-HHHHHHH----TCTTEEEEEEECSC-HHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCC
T ss_pred eEEEEecCHH--HH-HHHHHHH----hCCCcEEEEEEeCC-HHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCC
Confidence 5777773111 11 2334443 34778887665433 344554444 44532 34442 2234457887 468
Q ss_pred EEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+++..+....-.-.+++||..|++|+|-+.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP 123 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVS 123 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCC
Confidence 888776665555567789999999999764
No 156
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=42.92 E-value=81 Score=21.80 Aligned_cols=104 Identities=7% Similarity=-0.073 Sum_probs=55.9
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHhc-----CCeEEee
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALAM-----GKIVVCA 151 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma~-----G~PVV~s 151 (287)
.+++|+.+.+. ...+..... .+..+.........-..+.. .|+++.-. ..+.-|+.+++.+.. .+|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 46667765332 233444433 33332222221111133332 47766533 345567777777654 6777665
Q ss_pred cC-CC---ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 152 NH-PS---NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 152 ~~-~~---~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.. .. ...+..+..+++.. +.+++.++|..++...
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 84 SGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp ESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 44 22 23444455667765 9999999999998753
No 157
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=42.37 E-value=82 Score=21.72 Aligned_cols=105 Identities=6% Similarity=0.020 Sum_probs=60.5
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHhc-----CCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM-----GKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma~-----G~PVV~ 150 (287)
..+++|+.+.+. ...+.....+.+..+.........-..+. ..|+++.-. ..+.-|+.+++.+-. ..|||.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 356777766433 44566666666654433322211113333 347766533 335567888887753 356666
Q ss_pred ecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 151 ANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 151 s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
+.... .+.+..+..+++.. +.+++.++|.+....
T Consensus 86 ~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 86 VSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 65433 23455566777765 999999999998765
No 158
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=42.37 E-value=32 Score=24.72 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=46.2
Q ss_pred CCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+..|+|.|.-. .++++++++..+|.. |.+.+. ...|.+|.....|.-+.++-.|...|+|||.-+
T Consensus 12 ~G~~~ViTG~l~~~R~e~k~~ie~~Ggk--v~~sVs------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~ 78 (113)
T 2cok_A 12 SNMKILTLGKLSRNKDEVKAMIEKLGGK--LTGTAN------KASLCISTKKEVEKMNKKMEEVKEANIRVVSED 78 (113)
T ss_dssp SSCEEEECSCCSSCHHHHHHHHHHTTCE--EESCST------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECTH
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHCCCE--EcCccc------cCccEEEECCCCCCCChHHHHHHHCCCcEEeHH
Confidence 467888888754 478888899888844 566554 344555554222446789999999999998654
No 159
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=42.34 E-value=68 Score=22.42 Aligned_cols=105 Identities=10% Similarity=0.009 Sum_probs=58.2
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcC-CceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHhc---CCeEEee
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLK-IVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM---GKIVVCA 151 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~-l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma~---G~PVV~s 151 (287)
..+++|+.+.+. ...+.....+.+ ..+.........-..+. ..|+++.-. ..+.-|+.+++.+.. .+|||..
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 93 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV 93 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE
Confidence 457778866443 455666666666 44433322221112222 247766532 234445556655543 5777654
Q ss_pred cC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 152 NH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 152 ~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .. .+.+..+..+++.. +.+++..++..++..
T Consensus 94 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 94 SDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred eCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 43 33 33455566777775 999999999887653
No 160
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=41.80 E-value=19 Score=27.79 Aligned_cols=36 Identities=14% Similarity=-0.150 Sum_probs=28.0
Q ss_pred HHhhhCCEEEcC----CCCCcchHHHHHHHhcCCeEEeec
Q 023072 117 LIFHDYKVFLNP----STTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 117 ~~~~~adv~v~p----s~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
+.++.||++|.- ....|...-+--|.|.|+|||+-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 778999998762 233566667778999999999984
No 161
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=40.99 E-value=84 Score=27.02 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=51.5
Q ss_pred eEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCC------------HHHHhhhCCEEEc--CCCCCc---chHHHHHHHh
Q 023072 81 LEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH------------ADLIFHDYKVFLN--PSTTDV---VCTTTAEALA 143 (287)
Q Consensus 81 ~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~------------~~~~~~~adv~v~--ps~~E~---~~~~~~EAma 143 (287)
.++-|+|-|.=-..+.+.++.+|.++..+..... .+++++.||++++ |...|+ ++-..+..|-
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk 221 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMK 221 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSC
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcC
Confidence 4788999988777888888889988777643222 2278999999765 555565 5566677776
Q ss_pred cCCeEEeecCCC
Q 023072 144 MGKIVVCANHPS 155 (287)
Q Consensus 144 ~G~PVV~s~~~~ 155 (287)
-|.-+|-+..|+
T Consensus 222 ~~a~lIN~aRG~ 233 (334)
T 3kb6_A 222 DGVYLINTARGK 233 (334)
T ss_dssp TTEEEEECSCGG
T ss_pred CCeEEEecCccc
Confidence 666666554443
No 162
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=40.62 E-value=86 Score=21.47 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=59.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHh---cCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
+.++.|+.+.+. ...+.......+..+.........-..+.. .|+++.=. ....-|..+++.+. ..+|||...
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 346777776543 445666666656443322211111134433 46666432 23345666666664 356776543
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 83 GHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp CTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 3 33 33455666788775 999999999998764
No 163
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=40.01 E-value=1.5e+02 Score=23.92 Aligned_cols=120 Identities=11% Similarity=0.037 Sum_probs=65.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps 129 (287)
.++.+|.- ......+..+.+. .+.++++-.... +.+++++... .+.+. +.+.. ..+..+|++|..+
T Consensus 33 ~VLVVGgG------~va~~ka~~Ll~~--GA~VtVvap~~~-~~l~~l~~~~--~i~~i~~~~~~--~dL~~adLVIaAT 99 (223)
T 3dfz_A 33 SVLVVGGG------TIATRRIKGFLQE--GAAITVVAPTVS-AEINEWEAKG--QLRVKRKKVGE--EDLLNVFFIVVAT 99 (223)
T ss_dssp CEEEECCS------HHHHHHHHHHGGG--CCCEEEECSSCC-HHHHHHHHTT--SCEEECSCCCG--GGSSSCSEEEECC
T ss_pred EEEEECCC------HHHHHHHHHHHHC--CCEEEEECCCCC-HHHHHHHHcC--CcEEEECCCCH--hHhCCCCEEEECC
Confidence 57888842 3445555555554 456677755333 5677776653 34454 33332 3477899888766
Q ss_pred CCCcchHHHHHHHhcCCeEEeecCCC-cccc-----ccCCCeEeec---CHHHHHHHHHHHHh
Q 023072 130 TTDVVCTTTAEALAMGKIVVCANHPS-NDFF-----KQFPNCRTYD---DRNGFVEATLKALA 183 (287)
Q Consensus 130 ~~E~~~~~~~EAma~G~PVV~s~~~~-~e~i-----~~~~~g~l~~---d~~~l~~~i~~ll~ 183 (287)
-.+.....+.++.-.|+||-..|.+. .+++ ..++--+-+. ....++..|++-++
T Consensus 100 ~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie 162 (223)
T 3dfz_A 100 NDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLS 162 (223)
T ss_dssp CCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 55556666666656899999999876 4433 3322111122 34566666666554
No 164
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=39.79 E-value=95 Score=21.73 Aligned_cols=63 Identities=6% Similarity=-0.082 Sum_probs=36.5
Q ss_pred CCEEEcCCC-CCcchHHHHHHHh-----cCCeEEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 122 YKVFLNPST-TDVVCTTTAEALA-----MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 122 adv~v~ps~-~E~~~~~~~EAma-----~G~PVV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.|+++.-.. .+.-|+.+++.+. .++|||.... .. .+.+..+..+++.. +.+++..++..++..
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 47 PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp CSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 477665433 3445666776665 4677765443 22 33445556677765 999999999998864
No 165
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=39.00 E-value=92 Score=26.19 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=44.9
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.++++++ +-+. +.+..++++++++.... ..+..+.+-...|+++..+....-.-.+.+|+..|++|++-+
T Consensus 25 ~~~~~l~-v~d~-~~~~~~~~a~~~g~~~~---~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EK 94 (323)
T 1xea_A 25 WPDIELV-LCTR-NPKVLGTLATRYRVSAT---CTDYRDVLQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDK 94 (323)
T ss_dssp STTEEEE-EECS-CHHHHHHHHHHTTCCCC---CSSTTGGGGGCCSEEEECSCGGGHHHHHHHHHHTTCCEEEES
T ss_pred CCCceEE-EEeC-CHHHHHHHHHHcCCCcc---ccCHHHHhhcCCCEEEEECCchhHHHHHHHHHHCCCeEEEeC
Confidence 3678888 4433 34667777777764310 122233222568998887776655566678999999999865
No 166
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=38.81 E-value=1.5e+02 Score=23.79 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=33.5
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHh
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALA 183 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~ 183 (287)
..|.+|+ |...+...-.+-++...|+|||+.+..... .......++.+....+...++.
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~----~~~~V~~D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATPH----AINNTTSNNYSIGAELALQMVA 120 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCTT----CSEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCCC----cCceEecChHHHHHHHHHHHHH
Confidence 4566554 333233334455667789999999875421 1122334566666666666666
No 167
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=38.71 E-value=80 Score=23.88 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=40.0
Q ss_pred ccCHH--HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHh-cCCceEEecCCC-CHHHHhhhCCEEEcC
Q 023072 61 SKGYK--ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEK-LKIVVRVYPGRD-HADLIFHDYKVFLNP 128 (287)
Q Consensus 61 ~Kg~~--~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~-~~l~~~v~g~~~-~~~~~~~~adv~v~p 128 (287)
.|+.| ..++++... ...+.-+++-|+++ ...+-+.+++ +|..+.++|... ....+.+.||-|+..
T Consensus 91 k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~D-F~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l 159 (165)
T 2qip_A 91 KGDWDVGITLDAIEIA--PDVDRVILVSGDGD-FSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAI 159 (165)
T ss_dssp SCCCHHHHHHHHHHHG--GGCSEEEEECCCGG-GHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEEC
T ss_pred CCCccHHHHHHHHHhh--ccCCEEEEEECChh-HHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEec
Confidence 45665 445666543 33455555558775 4555555666 698887776543 234788999988753
No 168
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=38.05 E-value=45 Score=28.83 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhC--CEEEcC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDY--KVFLNP 128 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~a--dv~v~p 128 (287)
+|.++|-=.. |...+++++. ..++++++-+-+. +.+..++.+++++. ..++ .+.++++... |+++..
T Consensus 7 rigiIG~G~~--g~~~~~~~l~----~~~~~~l~av~d~-~~~~~~~~a~~~~~-~~~~---~~~~~ll~~~~vD~V~i~ 75 (359)
T 3m2t_A 7 KVGLVGIGAQ--MQENLLPSLL----QMQDIRIVAACDS-DLERARRVHRFISD-IPVL---DNVPAMLNQVPLDAVVMA 75 (359)
T ss_dssp EEEEECCSHH--HHHTHHHHHH----TCTTEEEEEEECS-SHHHHGGGGGTSCS-CCEE---SSHHHHHHHSCCSEEEEC
T ss_pred eEEEECCCHH--HHHHHHHHHH----hCCCcEEEEEEcC-CHHHHHHHHHhcCC-Cccc---CCHHHHhcCCCCCEEEEc
Confidence 5677763211 1112344443 3467887755443 33555555555432 1222 4455788765 888877
Q ss_pred CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 129 STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 129 s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+....-.-.+.+|+..|++|+|-+.
T Consensus 76 tp~~~H~~~~~~al~aGkhVl~EKP 100 (359)
T 3m2t_A 76 GPPQLHFEMGLLAMSKGVNVFVEKP 100 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECSC
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECC
Confidence 6655555567789999999998654
No 169
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=37.69 E-value=94 Score=21.05 Aligned_cols=103 Identities=12% Similarity=-0.030 Sum_probs=56.0
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHhc-----CCeEEeec
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM-----GKIVVCAN 152 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma~-----G~PVV~s~ 152 (287)
++.|+.+.+. ...+.......+..+.........-..+. ..|++++=. ..+.-|+.+++.+.. .+|||...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4566665433 34455556655544322211111113332 347766532 234456777777652 56777653
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. ...+..+..+++.. +.+++.+++..++..
T Consensus 83 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 83 AFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp ------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 3 22 23345566777765 999999999988764
No 170
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=37.65 E-value=1.1e+02 Score=26.29 Aligned_cols=59 Identities=22% Similarity=0.350 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 91 DFNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 91 ~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
+.+..++.+++++.. .++ .+.++++.. .|+++..+....-.-.+.+||..|++|+|-+.
T Consensus 55 ~~~~a~~~a~~~~~~-~~~---~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP 115 (383)
T 3oqb_A 55 SAEKVEALAKRFNIA-RWT---TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKP 115 (383)
T ss_dssp SSHHHHHHHHHTTCC-CEE---SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSC
T ss_pred CHHHHHHHHHHhCCC-ccc---CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCC
Confidence 346677788888753 222 445567776 68877766665556667899999999998654
No 171
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=37.64 E-value=97 Score=21.18 Aligned_cols=105 Identities=9% Similarity=-0.039 Sum_probs=58.7
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcC-CCCCcchHHHHHHHh-----cCCeEEee
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNP-STTDVVCTTTAEALA-----MGKIVVCA 151 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~p-s~~E~~~~~~~EAma-----~G~PVV~s 151 (287)
.+++|+.+.+. ...+.....+.+..+.........-..+.. .|+++.- ...+.-|+.+++.+. ..+|||..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 46777766443 455666677666543333222111134433 4776653 334556777877765 34677765
Q ss_pred cCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 152 NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 152 ~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.... ...+..+..+++.. +.++|.+++.......
T Consensus 84 s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 84 SGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp ECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred ECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 4422 22334445667765 9999999999886653
No 172
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=37.52 E-value=52 Score=23.34 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=45.1
Q ss_pred EEEEeCCcC-----HHHHHHHHHhcCCceEEe-cCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhc-CCeEEeecCCC
Q 023072 83 VDLYGNGED-----FNQIQEAAEKLKIVVRVY-PGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAM-GKIVVCANHPS 155 (287)
Q Consensus 83 l~i~G~g~~-----~~~l~~~~~~~~l~~~v~-g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~-G~PVV~s~~~~ 155 (287)
++++|.|-. ...+++.+++.++.+.+. -.....+..+..+|+++....... .. ++||+.-.
T Consensus 25 lvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~~~~~DlIist~~l~~---------~~~~ipvi~v~--- 92 (113)
T 1tvm_A 25 IVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDR---------SFGDIPLVHGM--- 92 (113)
T ss_dssp EEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEEESSCCCC---------CSTTCCEECCH---
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhccCCCCEEEECCcccc---------ccCCCCEEEEe---
Confidence 444477765 356777788888765552 233333334567999988765441 12 45665321
Q ss_pred ccccccCCCeEeecCHHHHHHHHHHHHh
Q 023072 156 NDFFKQFPNCRTYDDRNGFVEATLKALA 183 (287)
Q Consensus 156 ~e~i~~~~~g~l~~d~~~l~~~i~~ll~ 183 (287)
.+. . + .|.+++.+.+.+++.
T Consensus 93 -~~l-~---~---~d~~~i~~~i~~~l~ 112 (113)
T 1tvm_A 93 -PFV-S---G---VGIEALQNKILTILQ 112 (113)
T ss_dssp -HHH-H---S---SSHHHHHHHHHHHHH
T ss_pred -ecc-c---c---CCHHHHHHHHHHHHh
Confidence 111 1 1 167777777777664
No 173
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=37.51 E-value=1.6e+02 Score=24.02 Aligned_cols=51 Identities=6% Similarity=0.107 Sum_probs=35.9
Q ss_pred chHHHHHHHhcCCeEEeecC--CCccccccCCCeEeecCHHHHHHHHHHHHhCCC
Q 023072 134 VCTTTAEALAMGKIVVCANH--PSNDFFKQFPNCRTYDDRNGFVEATLKALAEEP 186 (287)
Q Consensus 134 ~~~~~~EAma~G~PVV~s~~--~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~ 186 (287)
.-.-+-|+||.-.-..--.. +...++.+. -+.+.|-+++.+.+.++-.++.
T Consensus 266 it~rvwe~~as~av~~~d~~fd~~~~i~~~a--~fyv~nr~elid~in~~k~~~~ 318 (351)
T 1jg7_A 266 ITLRVWETMASDAVMLIDEEFDTKHRIINDA--RFYVNNRAELIDRVNELKHSDV 318 (351)
T ss_dssp CCHHHHHHHTSSSEEEEEGGGCTTCCSCSCG--GGEECSHHHHHHHHHHHHHCHH
T ss_pred ecHHHHHHHhhhhHhhhhcccCcccccccCc--eeEecCHHHHHHHHhhccchHH
Confidence 35668899998776554443 225555552 3778899999999999877643
No 174
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.23 E-value=1.1e+02 Score=21.57 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=63.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PV 148 (287)
..+++|+.+... ...+.....+.+....+....+..+ ..+.. .|+++.-.. .+.-|+.+++.+.. ++||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 467788866443 4567777777776533322222222 34433 477666433 35567888888764 5777
Q ss_pred EeecC-CC----ccccccCCCeEeec---CHHHHHHHHHHHHhC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD---DRNGFVEATLKALAE 184 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~ 184 (287)
|.-.. .. .+.+..+..+++.. +.+++.++|..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~ 128 (144)
T 3kht_A 85 VILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSY 128 (144)
T ss_dssp EEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHH
Confidence 76544 32 33455666777764 788998888888763
No 175
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=36.74 E-value=28 Score=26.59 Aligned_cols=37 Identities=16% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHhhhCCEEEcC----CCCCcchHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNP----STTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~p----s~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..++.||++|.- ....|...-+-=|.|.|+|||+-..
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~~ 114 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVIP 114 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEEc
Confidence 778999998643 2335566667779999999999864
No 176
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=36.73 E-value=1e+02 Score=21.24 Aligned_cols=104 Identities=11% Similarity=-0.008 Sum_probs=61.8
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCc-eEEecCCCCHHHHhh---hCCEEEcC-CCCCcchHHHHHHHhc-----CCeEE
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIV-VRVYPGRDHADLIFH---DYKVFLNP-STTDVVCTTTAEALAM-----GKIVV 149 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~-~~v~g~~~~~~~~~~---~adv~v~p-s~~E~~~~~~~EAma~-----G~PVV 149 (287)
.++.|+.+.+. ...++....+.+.. +.........-..+. ..|+++.= ...+.-|+.+++.+-. .+|||
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEE
Confidence 46777766443 45566667776653 222221111113332 35777653 3345567888887753 56776
Q ss_pred eecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 150 CANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 150 ~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.... .. .+.+..+..+++.. +.+++.+++..++..
T Consensus 86 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 86 MITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 6543 33 23455666778876 999999999998864
No 177
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=36.67 E-value=59 Score=25.16 Aligned_cols=129 Identities=15% Similarity=0.200 Sum_probs=77.1
Q ss_pred cEEEEE-ecccccCHHHHHHHHHHHHHhcCCeEEEEE---eCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhCCEE
Q 023072 51 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVF 125 (287)
Q Consensus 51 ~i~~vG-~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~adv~ 125 (287)
.|+.-| .+.-.|-.+.+-+....|.++.-+++|-|- |.-+ -.+.-+..+.+. +..++ ..+....-+..+|+.
T Consensus 26 ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP--GhmNVLLAEA~VPYd~v~-EMdeIN~df~~tDv~ 102 (180)
T 1pno_A 26 VIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMP--GHMNVLLAEANVPYDEVF-ELEEINSSFQTADVA 102 (180)
T ss_dssp EEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTST--THHHHHHHHTTCCGGGEE-EHHHHGGGGGGCSEE
T ss_pred EEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCC--CcceEEEEeeCCCHHHHh-hHHHHhhhhhhcCEE
Confidence 344455 455667777777777777777666776664 3323 233334444333 11121 111111556777886
Q ss_pred E--------cCCCCC--c---chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHHHHHHHH
Q 023072 126 L--------NPSTTD--V---VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVEATLKAL 182 (287)
Q Consensus 126 v--------~ps~~E--~---~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~~i~~ll 182 (287)
+ +|+-.| + +|+.++|..-+..-+|+-.. +| +++|-...+-.++.|.++..+.|...+
T Consensus 103 lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l 179 (180)
T 1pno_A 103 FVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIVQAM 179 (180)
T ss_dssp EEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHHHHHHHHHHH
T ss_pred EEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHh
Confidence 5 465432 2 89999999988877766554 22 566666556688889888888777654
No 178
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=36.18 E-value=1.2e+02 Score=21.67 Aligned_cols=104 Identities=11% Similarity=0.017 Sum_probs=59.4
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhh---------hCCEEEcCCC-CCcchHHHHHHHhc--
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFH---------DYKVFLNPST-TDVVCTTTAEALAM-- 144 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~---------~adv~v~ps~-~E~~~~~~~EAma~-- 144 (287)
..+++|+.+.+. ...++......+....+....+-.+ ..+. ..|++++=.. .+.-|+.+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 467777776443 4456666665554323321112122 4444 3587775333 34457777777743
Q ss_pred ---CCeEEee-cCCC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 145 ---GKIVVCA-NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 145 ---G~PVV~s-~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
.+|||.- .... .+.+..+..+++.. +.+++..++..++.
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 136 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIES 136 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4676654 3333 33455566778776 89999998887754
No 179
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.96 E-value=1.2e+02 Score=21.65 Aligned_cols=107 Identities=14% Similarity=0.011 Sum_probs=60.0
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhh--hCCEEEcCC-CCCcchHHHHHHHh---cCCeE
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIV 148 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~--~adv~v~ps-~~E~~~~~~~EAma---~G~PV 148 (287)
...+++|+.+.+. ...+.....+.+.. .+.......+ +.+. ..|++++-. ..+.-|+.+++.+. ..+||
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~-~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~i 92 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSV-NVVGEADDGAAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRV 92 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSE-EEEEEESSHHHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCe-EEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeE
Confidence 3566777765433 34455555555532 2221222222 3332 347666533 33455677776664 35667
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
|.... .. .+.+..+..+++.. +.+++.+++..++....
T Consensus 93 i~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 93 LLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred EEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 65443 33 23456667778776 99999999999998643
No 180
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=35.85 E-value=1.8e+02 Score=23.86 Aligned_cols=61 Identities=11% Similarity=-0.003 Sum_probs=34.3
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEe-ecCHHHHHHHHHHHHh
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRT-YDDRNGFVEATLKALA 183 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l-~~d~~~l~~~i~~ll~ 183 (287)
..|.+|+ |...+...-.+-++...|+|||+.+...... .....++ .++.+....+...++.
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNS--GDVSYYATFDNFQVGVLQATSITD 121 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSC--TTCCEEEEECHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCC--CceeEEEEeCHHHHHHHHHHHHHH
Confidence 4566554 3333344455667788999999998744221 1112233 3555555556666665
No 181
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=35.83 E-value=1.8e+02 Score=23.64 Aligned_cols=65 Identities=12% Similarity=-0.033 Sum_probs=36.8
Q ss_pred hCCEEE-cCCCCCcchHHHHHHHhcCCeEEeecCCCccccc-cCCCeEeecCHHHHHHHHHHHHhCC
Q 023072 121 DYKVFL-NPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 121 ~adv~v-~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~-~~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
..|.+| .|...+.+.-.+-++...|+|||+.+......-. ........++.+....+...+++..
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 127 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELT 127 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhc
Confidence 456555 4544555555666788899999999875422100 1112233445555566666666654
No 182
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=35.78 E-value=61 Score=21.57 Aligned_cols=49 Identities=29% Similarity=0.403 Sum_probs=36.8
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeC-CcCHHHHHHHHHhcCCceEEe
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGN-GEDFNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~l~~~v~ 109 (287)
-|--+.+-+.+..+++...++++.|.-+ ..+.+..+++++++.+.++.-
T Consensus 32 vktedelkkyleefrkesqnikvlilvsndeeldkakelaqkmeidvrtr 81 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNIKVLILVSNDEELDKAKELAQKMEIDVRTR 81 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSEEEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred eccHHHHHHHHHHHHhhccCeEEEEEEcChHHHHHHHHHHHhhceeeeee
Confidence 3667788888888887777888777744 444677888999988877664
No 183
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=35.76 E-value=77 Score=27.74 Aligned_cols=90 Identities=17% Similarity=0.097 Sum_probs=52.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCC
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~ 130 (287)
+|..+|.- . |- .-++++.++ .++++|+=+-+.. .+..++.+++++.. ++. +.++++...|+.+..+.
T Consensus 9 rv~VvG~G-~--g~-~h~~a~~~~---~~~~elvav~~~~-~~~a~~~a~~~gv~--~~~---~~~~l~~~~D~v~i~~p 75 (372)
T 4gmf_A 9 RVLIVGAK-F--GE-MYLNAFMQP---PEGLELVGLLAQG-SARSRELAHAFGIP--LYT---SPEQITGMPDIACIVVR 75 (372)
T ss_dssp EEEEECST-T--TH-HHHHTTSSC---CTTEEEEEEECCS-SHHHHHHHHHTTCC--EES---SGGGCCSCCSEEEECCC
T ss_pred EEEEEehH-H--HH-HHHHHHHhC---CCCeEEEEEECCC-HHHHHHHHHHhCCC--EEC---CHHHHhcCCCEEEEECC
Confidence 68888852 2 32 234444322 2257776444433 36777888888854 443 33446667787655433
Q ss_pred CC---cc-hHHHHHHHhcCCeEEeecC
Q 023072 131 TD---VV-CTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 131 ~E---~~-~~~~~EAma~G~PVV~s~~ 153 (287)
.. +. --....||..|++|+|-+.
T Consensus 76 ~~~h~~~~~~~a~~al~aGkhVl~EKP 102 (372)
T 4gmf_A 76 STVAGGAGTQLARHFLARGVHVIQEHP 102 (372)
T ss_dssp --CTTSHHHHHHHHHHHTTCEEEEESC
T ss_pred CcccchhHHHHHHHHHHcCCcEEEecC
Confidence 22 22 2236788999999999875
No 184
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=35.72 E-value=1.6e+02 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 122 YKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 122 adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
=|+++.....+. ..++.||.-.|.|||+--
T Consensus 158 Pdll~v~Dp~~e-~~ai~EA~~l~IPvIaiv 187 (231)
T 3bbn_B 158 PDIVIIVDQQEE-YTALRECITLGIPTICLI 187 (231)
T ss_dssp CSEEEESCTTTT-HHHHHHHHTTTCCEEECC
T ss_pred CCEEEEeCCccc-cHHHHHHHHhCCCEEEEe
Confidence 366555433222 489999999999999863
No 185
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=35.40 E-value=1.7e+02 Score=23.39 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCc---C----HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCc------
Q 023072 67 LLELLDDHQKELAGLEVDLYGNGE---D----FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDV------ 133 (287)
Q Consensus 67 ll~a~~~l~~~~~~~~l~i~G~g~---~----~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~------ 133 (287)
+.+++.++.. ...++.|+..+. + ...+.+..++++..+..+...++..+.+..||.+++|- -+.
T Consensus 20 ~~~~l~~~~~--~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~ad~I~lpG-G~~~~~~~~ 96 (229)
T 1fy2_A 20 ALPLIANQLN--GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGG-GNTFQLLKE 96 (229)
T ss_dssp THHHHHHHHT--TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHHCSEEEECC-SCHHHHHHH
T ss_pred HHHHHHHHhc--CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhcCCEEEECC-CcHHHHHHH
Confidence 3445555543 245777775542 2 33455566677765444432333436788999999985 332
Q ss_pred -----chHHHHHHHhcCCeEEeecCCC
Q 023072 134 -----VCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 134 -----~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+--.+-|+...|+|++.+-.|.
T Consensus 97 l~~~gl~~~l~~~~~~G~p~~G~sAG~ 123 (229)
T 1fy2_A 97 SRERGLLAPMADRVKRGALYIGWSAGA 123 (229)
T ss_dssp HHHTTCHHHHHHHHHTTCEEEEETHHH
T ss_pred HHHCChHHHHHHHHHcCCEEEEECHHH
Confidence 3335677888999999987665
No 186
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=35.23 E-value=1.2e+02 Score=21.60 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=58.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHh-cCCceEEecCCCCHH---HHhhh--CCEEEcCCC-CCcchHHHHHHHh---cCCeE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEK-LKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~-~~l~~~v~g~~~~~~---~~~~~--adv~v~ps~-~E~~~~~~~EAma---~G~PV 148 (287)
..+++|+.+.+. ...+...... .+. .+.+.....+ ..+.. .|++|+-.. .+.-|..+++.+. ..+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~--~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGY--AVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTE--EEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCc--EEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 456777766433 3445555544 332 2332222222 33333 477765333 3445666666654 35676
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
|.... .. ...+..+..+++.. +.+++..+|..++...
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 65433 33 33445566777765 8999999999988753
No 187
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=35.11 E-value=1.1e+02 Score=22.88 Aligned_cols=104 Identities=10% Similarity=0.014 Sum_probs=59.0
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHh---cCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
..+++|+.+.+. ...+.......+..+.........-+.+.. .|++++=. ..+.-|+.+++.+- ..+|||.-.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 356777766443 445666666666443222221111134433 47766532 23456777777654 367777644
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
. .. .+.+..+..+++.. +.+++..++..++.
T Consensus 87 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~ 124 (184)
T 3rqi_A 87 GYASIATAVQAVKDGADNYLAKPANVESILAALQTNAS 124 (184)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHH
T ss_pred CCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 3 33 33456667788876 99999888877654
No 188
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=34.99 E-value=1e+02 Score=25.36 Aligned_cols=77 Identities=10% Similarity=0.144 Sum_probs=53.9
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC------HHHHHHHHHhcCCceEEecC--CCCHH--HHhh
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED------FNQIQEAAEKLKIVVRVYPG--RDHAD--LIFH 120 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~------~~~l~~~~~~~~l~~~v~g~--~~~~~--~~~~ 120 (287)
+|+|+|-+.-+-|...+...++++++++ | ++|+-.++. .+..-+....++.++...|. .++.+ .++.
T Consensus 2 ~ilfiGDi~g~~G~~~v~~~l~~lr~~~-d--~vi~ngen~~~G~g~~~~~~~~l~~~G~D~~T~GNHefD~~~l~~~l~ 78 (252)
T 2z06_A 2 RVLFIGDVMAEPGLRAVGLHLPDIRDRY-D--LVIANGENAARGKGLDRRSYRLLREAGVDLVSLGNHAWDHKEVYALLE 78 (252)
T ss_dssp EEEEECCBCHHHHHHHHHHHHHHHGGGC-S--EEEEECTTTTTTSSCCHHHHHHHHHHTCCEEECCTTTTSCTTHHHHHH
T ss_pred EEEEEEecCCcccHHHHHHHHHHHHhhC-C--EEEEeCCCccCCCCcCHHHHHHHHhCCCCEEEeccEeeECchHHHHhc
Confidence 5899999888889999999999998886 4 566622211 23444556677877655665 35545 7888
Q ss_pred hCCEEEcCCCC
Q 023072 121 DYKVFLNPSTT 131 (287)
Q Consensus 121 ~adv~v~ps~~ 131 (287)
..+ .+.|..+
T Consensus 79 ~~~-~vrpaN~ 88 (252)
T 2z06_A 79 SEP-VVRPLNY 88 (252)
T ss_dssp HSS-EECCTTS
T ss_pred cCC-ceEeecC
Confidence 888 7777665
No 189
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=34.80 E-value=93 Score=24.85 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=30.0
Q ss_pred CHHHHh-hhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 114 HADLIF-HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 114 ~~~~~~-~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
+.++++ ..+|+.+..+..+..--.+.+++..|++||+.....
T Consensus 42 ~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~ 84 (236)
T 2dc1_A 42 GIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGA 84 (236)
T ss_dssp SHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGG
T ss_pred CHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECccc
Confidence 344666 578998887665554445678899999999986543
No 190
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.67 E-value=61 Score=23.09 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=45.1
Q ss_pred HHhhhCCEEEcCCCC-----CcchHHHHHHHhcCCeEEeecCCCcc----ccccCCCeEeec-CHHHHHHHHHHHHh
Q 023072 117 LIFHDYKVFLNPSTT-----DVVCTTTAEALAMGKIVVCANHPSND----FFKQFPNCRTYD-DRNGFVEATLKALA 183 (287)
Q Consensus 117 ~~~~~adv~v~ps~~-----E~~~~~~~EAma~G~PVV~s~~~~~e----~i~~~~~g~l~~-d~~~l~~~i~~ll~ 183 (287)
.-++.++++|..+-. +..-.-+-.|.-.|+|+|+-...+.+ .+.+. ..-++. |.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~-a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAV-SSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHH-CSEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhh-CceeccCCHHHHHHHHHhccC
Confidence 347788888764332 33555677888999999999986633 22221 124566 99999999988764
No 191
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=34.05 E-value=1.1e+02 Score=20.78 Aligned_cols=103 Identities=6% Similarity=-0.051 Sum_probs=55.0
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHHh--cCCeEEeecC-C
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEALA--MGKIVVCANH-P 154 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAma--~G~PVV~s~~-~ 154 (287)
++.|+.+.+. ...+.....+.+..+.........-+.+.. .|+++.=. ..+.-|+.+++.+. ...|+|.-.. .
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 4566655332 344555555555443322211111133332 46665532 23445666666653 3567665433 3
Q ss_pred C----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 155 S----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 155 ~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. ...+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 84 SEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 2 23455566777765 999999999988753
No 192
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=33.74 E-value=1.1e+02 Score=20.74 Aligned_cols=100 Identities=7% Similarity=-0.120 Sum_probs=57.1
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhh--hCCEEEcCCC-CCcchHHHHHHHh-----cCCeEE
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFH--DYKVFLNPST-TDVVCTTTAEALA-----MGKIVV 149 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~--~adv~v~ps~-~E~~~~~~~EAma-----~G~PVV 149 (287)
++.|+.+.+. ...+.......+..+... ...+ ..+. ..|+++.-.. .+.-|..+++.+. .++|||
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~---~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEA---EDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEE---CSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEe---CCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5667766443 345555666555443222 2222 2222 2477665322 3445777777775 356776
Q ss_pred eec-CCC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 150 CAN-HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 150 ~s~-~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.-. ... .+.+..+..+++.. +.+++..++..++..
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 543 332 33455566677765 999999999998865
No 193
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=33.58 E-value=2e+02 Score=23.52 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=32.9
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCe-EeecCHHHHHHHHHHHH
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNC-RTYDDRNGFVEATLKAL 182 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g-~l~~d~~~l~~~i~~ll 182 (287)
..|.+|+ |...+...-.+-++...|+|||+.+..... ..... ...++.+....+...++
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~---~~~~~~V~~D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMIND---ADIDFYISFDNEKVGELQAKALV 118 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTT---SCCSEEEEECHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCC---CCceEEEecCHHHHHHHHHHHHH
Confidence 3555544 444444444556667789999998864322 11112 33345555666666666
No 194
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.49 E-value=1.2e+02 Score=20.84 Aligned_cols=107 Identities=7% Similarity=0.003 Sum_probs=58.2
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh---hCCEEEcCCC-CC-cchHHHHHHHh---cCCeEEe
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---DYKVFLNPST-TD-VVCTTTAEALA---MGKIVVC 150 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~---~adv~v~ps~-~E-~~~~~~~EAma---~G~PVV~ 150 (287)
..+++|+.+.+. ...+.......+..+.........-..+. ..|++++-.. .+ .-|+.+++.+. ..+|||.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 456777776443 44566666666654433222111113333 3577765333 33 45666766654 3677765
Q ss_pred ecC-CCccccccC-C-CeEeec--CHHHHHHHHHHHHhCCC
Q 023072 151 ANH-PSNDFFKQF-P-NCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 151 s~~-~~~e~i~~~-~-~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
... ...+..... . .+++.. +.+++..++..++....
T Consensus 85 ~s~~~~~~~~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 85 ISGHAALEWASNGVPDSIILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EESSCCTTHHHHSCTTCEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EeCCccHHHHHhhcCCcceEeCCCCHHHHHHHHHHHHhcCC
Confidence 433 322221111 1 246655 99999999999987644
No 195
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=33.34 E-value=1.2e+02 Score=20.84 Aligned_cols=105 Identities=9% Similarity=-0.015 Sum_probs=56.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc---CCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM---GKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~---G~PVV~s~ 152 (287)
..+++|+.+.+. ...+.....+.+..+.........-+.+.. .|+++.-.. .+.-|+.+++.+.. .+|+|.-.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 457788866443 455666677766554332221111134433 477665433 34456777766643 46666543
Q ss_pred C-CC----ccccccCCCeEeec---CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQFPNCRTYD---DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+..+++.. +.+.+.+.+..++..
T Consensus 87 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 3 33 33455666777764 678999999988865
No 196
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.31 E-value=91 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=21.2
Q ss_pred hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 121 DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 121 ~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
..|.+|+........-.+-++...|+|||+.+...
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence 56766654322333333445567899999988744
No 197
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=33.14 E-value=1.2e+02 Score=21.11 Aligned_cols=105 Identities=9% Similarity=-0.020 Sum_probs=58.4
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHhc--CCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM--GKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma~--G~PVV~s~~ 153 (287)
..+++|+.+.+. ...+.......+..+.........-..+. ..|+++.-. ..+.-|+.+++.+.. .+|||.-..
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 356777776443 34566666655544322221111113333 347766532 234456777776643 567665433
Q ss_pred -CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .+.+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 121 (136)
T 2qzj_A 84 INEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121 (136)
T ss_dssp CCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 33 33455566777765 999999999887754
No 198
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=32.55 E-value=2e+02 Score=23.27 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=21.1
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCC
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHP 154 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~ 154 (287)
..|.+|+ |...+...-.+-++...|+|||+.+..
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 57 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCC
Confidence 3455544 433343333456777899999999853
No 199
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=32.47 E-value=44 Score=27.20 Aligned_cols=66 Identities=14% Similarity=-0.026 Sum_probs=43.4
Q ss_pred CeEEEEEeCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 80 GLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
...+.+-|-.+ +...+.+.+..+|.. +... . .+-..+.-+|.+... -..+++.|+|.|++||..+.
T Consensus 9 ~~~~~~Sg~~~~~~~~l~~~i~~LGg~--~~~~---~-~~~~~~THlV~~~~~--RT~K~l~aia~G~wIvs~~w 75 (235)
T 3al2_A 9 QYIFQLSSLNPQERIDYCHLIEKLGGL--VIEK---Q-CFDPTCTHIVVGHPL--RNEKYLASVAAGKWVLHRSY 75 (235)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHTTCE--ECCS---S-SCCTTCCEEEESSCC--CSHHHHHHHHTTCEEECTHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHcCCE--Eecc---C-CCCCCCcEEEECCCC--CCHHHHHHHHcCCcCccHHH
Confidence 56677766443 245678888888754 3211 0 112456777776532 26899999999999999875
No 200
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=32.41 E-value=43 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=27.9
Q ss_pred HHHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 71 LDDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 71 ~~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
+..+....|...++|+|.|.. ..++++...+.|+.+.+.
T Consensus 58 l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M 100 (135)
T 2fvt_A 58 LQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTM 100 (135)
T ss_dssp THHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEE
T ss_pred HHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEe
Confidence 333444456678999999876 466777788888877776
No 201
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=32.26 E-value=1.8e+02 Score=23.54 Aligned_cols=64 Identities=6% Similarity=-0.208 Sum_probs=30.9
Q ss_pred hCCEEE-cCCCCCcchHHHHHHHhcCCeEEeecCCCcccc--ccCCCeEee-cCHHHHHHHHHHHHhCC
Q 023072 121 DYKVFL-NPSTTDVVCTTTAEALAMGKIVVCANHPSNDFF--KQFPNCRTY-DDRNGFVEATLKALAEE 185 (287)
Q Consensus 121 ~adv~v-~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i--~~~~~g~l~-~d~~~l~~~i~~ll~~~ 185 (287)
..|.+| .|...+.+.-.+-++. .|+|||+.+....... ......++. ++.+....+...+++..
T Consensus 63 ~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g 130 (304)
T 3o1i_D 63 GANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERH 130 (304)
T ss_dssp TCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhc
Confidence 345554 4444444344455555 8999999865331000 111112222 34555555555565554
No 202
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=32.15 E-value=1.4e+02 Score=22.90 Aligned_cols=103 Identities=9% Similarity=0.066 Sum_probs=57.2
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCC-CCCcchHHHHHHHh---cCCeEEeecC-CC
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCANH-PS 155 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~~-~~ 155 (287)
++.|+.+.+. ...+.......+ .+.........-..+...|++++=. ..+.-|+.+++.+. ..+|||.-.. ..
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5666665433 334555555444 2222211111112224568776532 33445677776664 4677776543 33
Q ss_pred ----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 156 ----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 156 ----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
...+..+..+++.. +.+++..++..++...
T Consensus 83 ~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 83 DESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp HHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 33445566777775 9999999999988753
No 203
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=31.72 E-value=2.4e+02 Score=24.73 Aligned_cols=75 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCC-------------------------------------H---HHH
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDH-------------------------------------A---DLI 118 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~-------------------------------------~---~~~ 118 (287)
++.++.|+|.|.--...-+.+..+|.++.++...+. . ++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~ 262 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDA 262 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHH
Confidence 457888898887555555566667766555522210 0 157
Q ss_pred hhhCCEEEcCCCCC------cchHHHHHHHhcCCeEEeecC
Q 023072 119 FHDYKVFLNPSTTD------VVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 119 ~~~adv~v~ps~~E------~~~~~~~EAma~G~PVV~s~~ 153 (287)
+..+|++|...... -+.-..++.|.-|.-+|-...
T Consensus 263 l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 263 ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence 78899998753221 145677888888887775543
No 204
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=31.71 E-value=1.3e+02 Score=20.94 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=60.8
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCC--ceEEecCCCCHHHHhh--------hCCEEEcCCC-CCcchHHHHHHHh----
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKI--VVRVYPGRDHADLIFH--------DYKVFLNPST-TDVVCTTTAEALA---- 143 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l--~~~v~g~~~~~~~~~~--------~adv~v~ps~-~E~~~~~~~EAma---- 143 (287)
..+++|+.+.+. ...+.....+.+. .+.........-..+. ..|++++-.. .+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356777766443 4556666776665 3333332222224443 3577765433 3445777887775
Q ss_pred -cCCeEEeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 144 -MGKIVVCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 144 -~G~PVV~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
..+|+|.... .. .+.+..+..+++.. +.+++.+++......
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 4677765543 32 33445566677765 999999887765543
No 205
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=31.52 E-value=92 Score=26.61 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=43.7
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++++-+-+.. ..++.+++++. .+.++ .+.++++.. .|+++..+....-.-.+..|+..|++|+|-+.
T Consensus 25 ~~~~~l~av~d~~---~~~~~a~~~~~~~~~~~---~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP 97 (349)
T 3i23_A 25 RETLEVKTIFDLH---VNEKAAAPFKEKGVNFT---ADLNELLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKP 97 (349)
T ss_dssp CTTEEEEEEECTT---CCHHHHHHHHTTTCEEE---SCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSC
T ss_pred CCCeEEEEEECCC---HHHHHHHhhCCCCCeEE---CCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHcCCEEEEECC
Confidence 4788887666544 22334444332 23344 233457765 78888877665545556799999999998543
No 206
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}
Probab=31.47 E-value=1.7e+02 Score=25.70 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecC----------CCCHHHHhhhCCEEEc--CCCCC----c---chHHHH
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFLN--PSTTD----V---VCTTTA 139 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~----------~~~~~~~~~~adv~v~--ps~~E----~---~~~~~~ 139 (287)
.+-++-|+|-|.--..+.+.+..+|.++.++.. ....++++..||++++ |...+ + +.-..+
T Consensus 115 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l 194 (380)
T 2o4c_A 115 AERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRL 194 (380)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHH
Confidence 356899999987767777777788877666521 1223378999999876 43333 2 444577
Q ss_pred HHHhcCCeEEeecCCC
Q 023072 140 EALAMGKIVVCANHPS 155 (287)
Q Consensus 140 EAma~G~PVV~s~~~~ 155 (287)
+.|--|.-+|-+..++
T Consensus 195 ~~mk~gailIN~sRG~ 210 (380)
T 2o4c_A 195 AALRPGTWLVNASRGA 210 (380)
T ss_dssp HTSCTTEEEEECSCGG
T ss_pred hhCCCCcEEEECCCCc
Confidence 7777777777665554
No 207
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=31.38 E-value=1.6e+02 Score=24.69 Aligned_cols=52 Identities=8% Similarity=-0.007 Sum_probs=37.5
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCC
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~ 130 (287)
..-+.+|+|.+.- -.-+..+....+..+.+... ..+.++..+.||++|...-
T Consensus 160 ~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 160 EGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 213 (285)
T ss_dssp TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHhcccCCEEEECCC
Confidence 4678999997663 45566667777877777543 4455589999999998653
No 208
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=31.24 E-value=1.2e+02 Score=23.43 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=79.0
Q ss_pred cEEEEE-ecccccCHHHHHHHHHHHHHhcCCeEEEEE---eCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhCCEE
Q 023072 51 GAYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVF 125 (287)
Q Consensus 51 ~i~~vG-~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~adv~ 125 (287)
.|+.-| .+.-.+-.+.+-+....|.++.-+++|-|- |.-+ -.+.-+..+.+. +..++ ..+....-+..+|+.
T Consensus 25 ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP--GhMNVLLAEA~VPYd~v~-EMdeIN~df~~tDv~ 101 (184)
T 1d4o_A 25 IIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMP--GQLNVLLAEAGVPYDIVL-EMDEINHDFPDTDLV 101 (184)
T ss_dssp EEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSST--THHHHHHHHHTCCGGGEE-EHHHHGGGGGGCSEE
T ss_pred EEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCC--CcceEEEEEecCCHHHHH-hHHHHhhhhhhcCEE
Confidence 344555 456667777777777777777667777664 4333 233333334333 11121 111111557778886
Q ss_pred E--------cCCCC--Cc---chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 126 L--------NPSTT--DV---VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 126 v--------~ps~~--E~---~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+ +|+-. .+ +|+.++|..-+..-+|+-.. +| +++|-...+-.++.|..+..+.|...+..
T Consensus 102 lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 180 (184)
T 1d4o_A 102 LVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 180 (184)
T ss_dssp EEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred EEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 5 34432 12 88999999988887777654 22 56666655668888998888888877764
No 209
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=30.85 E-value=2e+02 Score=22.73 Aligned_cols=105 Identities=7% Similarity=-0.129 Sum_probs=58.8
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHh---cCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
..++.|+-+.+. ...+.......+..+.........-+.+. ..|++++=. ..+.-|+.+++.+. ..+|||.-.
T Consensus 23 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt 102 (250)
T 3r0j_A 23 EARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLT 102 (250)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 456777765433 34455555555544332221111113332 347766532 33455777777664 356766544
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+..+++.. +.+++..+|..++..
T Consensus 103 ~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 103 ARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp CSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 3 33 33456667778876 999999999998863
No 210
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=30.52 E-value=1.7e+02 Score=24.54 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCC
Q 023072 68 LELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~ 130 (287)
++.++...-....-+.+|+|.+.- -.-+..+....+..+.+... ..+.++..+.||++|...-
T Consensus 148 ~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 148 MKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHTTCSEEEECSS
T ss_pred HHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHHHHhhcCCEEEECCC
Confidence 344443332334678999997663 45566666777878777544 4455589999999998653
No 211
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=30.39 E-value=1.8e+02 Score=22.05 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=50.2
Q ss_pred HHHHHHhcCCceEEecCCCCHH--HHhhhC-----CEEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---cccc----
Q 023072 95 IQEAAEKLKIVVRVYPGRDHAD--LIFHDY-----KVFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFF---- 159 (287)
Q Consensus 95 l~~~~~~~~l~~~v~g~~~~~~--~~~~~a-----dv~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i---- 159 (287)
+++.+.+++..+.++..-...+ +.++.| .+.++|.-+-..+..+.+|+ +.++|+|=-.... +|.|
T Consensus 35 l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~S 114 (154)
T 1uqr_A 35 LQQSAQAQGYELDYFQANGEESLINRIHQAFQNTDFIIINPGAFTHTSVAIRDALLAVSIPFIEVHLSNVHAREPFRHHS 114 (154)
T ss_dssp HHHHHHHTTCEEEEEECSSHHHHHHHHHHTTTTCCEEEEECTTHHHHCHHHHHHHHHHTCCEEEEESSCGGGSCGGGSCC
T ss_pred HHHHHHHCCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECcchhccchHHHHHHHHhCCCCEEEEEecCccccccccccc
Confidence 4444555555555542222222 333333 36788888777899999998 5689999766544 5544
Q ss_pred --ccCCCeEeec-CHHHHHHHHHHH
Q 023072 160 --KQFPNCRTYD-DRNGFVEATLKA 181 (287)
Q Consensus 160 --~~~~~g~l~~-d~~~l~~~i~~l 181 (287)
.+...|.++. -.+...-++..+
T Consensus 115 ~~s~~a~GvI~G~G~~gY~lAl~a~ 139 (154)
T 1uqr_A 115 YLSDVAKGVICGLGAKGYDYALDFA 139 (154)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHH
T ss_pred ccCcceeEEEEecCHHHHHHHHHHH
Confidence 3334566665 444444444443
No 212
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=30.23 E-value=1.8e+02 Score=23.35 Aligned_cols=100 Identities=13% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhc
Q 023072 65 KELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAM 144 (287)
Q Consensus 65 ~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~ 144 (287)
..+++++.+.++... ++-++|.+.-...++.+..-+++++.++...+..+ .-..+.++..-
T Consensus 93 ~Dil~aL~~a~~~~~--kIavVg~~~~~~~~~~i~~ll~~~i~~~~~~~~ee-----------------~~~~i~~l~~~ 153 (225)
T 2pju_A 93 YDVLQFLAKAGKLTS--SIGVVTYQETIPALVAFQKTFNLRLDQRSYITEED-----------------ARGQINELKAN 153 (225)
T ss_dssp HHHHHHHHHTTCTTS--CEEEEEESSCCHHHHHHHHHHTCCEEEEEESSHHH-----------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCC--cEEEEeCchhhhHHHHHHHHhCCceEEEEeCCHHH-----------------HHHHHHHHHHC
Confidence 355666666654322 55666665555556666666666665543333222 22456677777
Q ss_pred CCeEEeecCCCccccc-cCCCeEeecCHHHHHHHHHHHHh
Q 023072 145 GKIVVCANHPSNDFFK-QFPNCRTYDDRNGFVEATLKALA 183 (287)
Q Consensus 145 G~PVV~s~~~~~e~i~-~~~~g~l~~d~~~l~~~i~~ll~ 183 (287)
|+=||..+.-..+.-. -+-++.+..+.+++.+++.+++.
T Consensus 154 G~~vVVG~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA~~ 193 (225)
T 2pju_A 154 GTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALD 193 (225)
T ss_dssp TCCEEEESHHHHHHHHHTTSEEEESSCHHHHHHHHHHHHH
T ss_pred CCCEEECCHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 7777666543322222 12234333367777777777654
No 213
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=30.19 E-value=63 Score=25.08 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=75.6
Q ss_pred EEEEE-ecccccCHHHHHHHHHHHHHhcCCeEEEEE---eCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhCCEEE
Q 023072 52 AYYIG-KMVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVFL 126 (287)
Q Consensus 52 i~~vG-~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~adv~v 126 (287)
|+.-| .+.-.|-...+-+....|.++..+++|-|- |.-+. .+.-+..+-+. +..++ ..+....-+..+|+.+
T Consensus 34 iIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPG--hMNVLLAEA~VPYd~v~-EMdeIN~df~~tDv~l 110 (186)
T 2bru_C 34 IITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPG--HMNVLLAEAKVPYDIVL-EMDEINDDFADTDTVL 110 (186)
T ss_dssp EEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSS--THHHHHHHHTCCTTTEE-ESCCCHHHHHHCSEEE
T ss_pred EEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCC--cceEEEEecCCCHHHHh-hHHHHhcccccCCEEE
Confidence 44444 355667777777777777777667777664 44332 22223333332 21222 1222335688888865
Q ss_pred --------cCCCCC--c---chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHHHHHHH
Q 023072 127 --------NPSTTD--V---VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVEATLKA 181 (287)
Q Consensus 127 --------~ps~~E--~---~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~~i~~l 181 (287)
+|+-.| + +|+.++|..-+..-+|+-.. +| +++|-...+-.++.|.++..+.|...
T Consensus 111 VIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~ 185 (186)
T 2bru_C 111 VIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAILKA 185 (186)
T ss_dssp ECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHHHHHHHHHH
T ss_pred EeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHh
Confidence 465432 2 89999999888866665544 22 55665555668888888887777653
No 214
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=30.00 E-value=1.2e+02 Score=27.76 Aligned_cols=113 Identities=7% Similarity=0.038 Sum_probs=65.9
Q ss_pred cccCHHHHHHHHHHH-HHh---c--CCeEEEEEeCC----cCHHHHHHHHHhcCCceEEecCC-----------------
Q 023072 60 WSKGYKELLELLDDH-QKE---L--AGLEVDLYGNG----EDFNQIQEAAEKLKIVVRVYPGR----------------- 112 (287)
Q Consensus 60 ~~Kg~~~ll~a~~~l-~~~---~--~~~~l~i~G~g----~~~~~l~~~~~~~~l~~~v~g~~----------------- 112 (287)
...|++..++++-+. ... . ..-.+-|+|.- .|..+++++.+++|+.+.+++..
T Consensus 191 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNIlg~~~~~~gD~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~g 270 (519)
T 1qgu_B 191 HVTGWDNMFEGFAKTFTADYQGQPGKLPKLNLVTGFETYLGNFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSG 270 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCSCCCHHHHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCC
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCC
Confidence 447888888876653 221 1 12356777753 23578999999999988865432
Q ss_pred -CCHH--HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCC
Q 023072 113 -DHAD--LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 113 -~~~~--~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
...+ .-+..|.+-|.. ....+..+.++|. +|+|.+..+.|- | ..+.+++.++|.+++..+
T Consensus 271 g~~~~ei~~~~~A~~niv~--~~~~~~~~A~~Le~r~GiP~i~~~~Pi---------G--~~~T~~~L~~la~~~g~~ 335 (519)
T 1qgu_B 271 GTTQQEMKEAPDAIDTLLL--QPWQLLKSKKVVQEMWNQPATEVAIPL---------G--LAATDELLMTVSQLSGKP 335 (519)
T ss_dssp CBCHHHHHHGGGEEEEEES--STTTCHHHHHHHHHTSCCCCCCCCCCB---------S--HHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHhhhcCCEEEEE--CHHHHHHHHHHHHHHcCCCeEecCCCc---------c--hHHHHHHHHHHHHHHCCC
Confidence 2233 344444444443 3334577777775 489988765321 0 024566666666666543
No 215
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=29.91 E-value=67 Score=28.91 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC--------------CCHHHHhhhCCEEEcCCCCC-cchHHHHHHHh
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLNPSTTD-VVCTTTAEALA 143 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~--------------~~~~~~~~~adv~v~ps~~E-~~~~~~~EAma 143 (287)
.+.++.|+|-|.--..+...+..+|.++.++... ...++++..+|+++..+-.. .+.-..++.|.
T Consensus 210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~~iI~~e~l~~MK 289 (436)
T 3h9u_A 210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGNDDIITSEHFPRMR 289 (436)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCTTTGGGCC
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCcCccCHHHHhhcC
Confidence 3578999998876667777778888776665321 12236788899988755432 24445666677
Q ss_pred cCCeEEeecCCC
Q 023072 144 MGKIVVCANHPS 155 (287)
Q Consensus 144 ~G~PVV~s~~~~ 155 (287)
-|.-+|....+.
T Consensus 290 ~gAIVINvgRg~ 301 (436)
T 3h9u_A 290 DDAIVCNIGHFD 301 (436)
T ss_dssp TTEEEEECSSSG
T ss_pred CCcEEEEeCCCC
Confidence 776666554443
No 216
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=29.75 E-value=1.8e+02 Score=24.41 Aligned_cols=52 Identities=8% Similarity=-0.070 Sum_probs=37.7
Q ss_pred CCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCC
Q 023072 79 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPST 130 (287)
Q Consensus 79 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~ 130 (287)
..-+.+|+|.+. --.-+..+....+..+.+... ..+.++..+.||++|...-
T Consensus 160 ~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 160 YGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVAAG 213 (286)
T ss_dssp TTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHTCSEEEECCC
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHHHHhccCCEEEECCC
Confidence 467899999765 345566667777878777544 4455589999999998653
No 217
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=29.64 E-value=1.4e+02 Score=20.54 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=44.9
Q ss_pred CCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.++.++|.|.-+ ....+++++..+|.. +...++ ..++-+|.......-+.++..|...|+|||..+
T Consensus 17 ~g~~i~isg~~~~~r~~l~~li~~~Gg~--v~~~~s------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~ 83 (107)
T 3l3e_A 17 HKVVVCVSKKLSKKQSELNGIAASLGAD--YRRSFD------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSEH 83 (107)
T ss_dssp TTCEEEECGGGGGGHHHHHHHHHHTTCE--EESSCC------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECHH
T ss_pred CCeEEEEeCCChHhHHHHHHHHHHcCCE--Eecccc------CCceEEEecCCCCCCCHHHHHHHHCCCeEecHH
Confidence 467888888644 467888888888754 444433 345566664333445688889999999999764
No 218
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=29.58 E-value=1.3e+02 Score=20.23 Aligned_cols=102 Identities=10% Similarity=-0.048 Sum_probs=55.8
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh--cCCeEEeecC-C
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH-P 154 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma--~G~PVV~s~~-~ 154 (287)
++.|+.+.+. ...+.......+..+...........++. ..|+++.-.. .+.-|+.+++.+. ...|+|.... .
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 5666665433 34555555555544332222111113333 2477665332 3445677777664 3567665433 3
Q ss_pred C----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 155 S----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 155 ~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
. .+.+..+..+++.. +.+++...+..++.
T Consensus 84 ~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 118 (122)
T 1zgz_A 84 DRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLW 118 (122)
T ss_dssp CHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHH
Confidence 3 23445566777765 99999999988765
No 219
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=29.41 E-value=2e+02 Score=22.37 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcC
Q 023072 66 ELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 66 ~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G 145 (287)
.+++++.+.++... ++-++|.+.-...++.+..-++.++.++...+. |..-..+.++..-|
T Consensus 82 Dil~al~~a~~~~~--kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~-----------------~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 82 DTMRAVYNAKRFGN--ELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSE-----------------DEITTLISKVKTEN 142 (196)
T ss_dssp HHHHHHHHHGGGCS--EEEEEEESSCSSCHHHHHHHHTCEEEEEEECSG-----------------GGHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCC--cEEEEeCcchhhHHHHHHHHhCCceEEEEeCCH-----------------HHHHHHHHHHHHCC
Confidence 44555555544322 455555544333344444444444444322221 12234666777777
Q ss_pred CeEEeecCCCcccccc-CCCe-EeecCHHHHHHHHHHHHh
Q 023072 146 KIVVCANHPSNDFFKQ-FPNC-RTYDDRNGFVEATLKALA 183 (287)
Q Consensus 146 ~PVV~s~~~~~e~i~~-~~~g-~l~~d~~~l~~~i~~ll~ 183 (287)
+=||..+.-..+.-.. +-++ ++..+.+++.+++.+++.
T Consensus 143 ~~vvVG~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 143 IKIVVSGKTVTDEAIKQGLYGETINSGEESLRRAIEEALN 182 (196)
T ss_dssp CCEEEECHHHHHHHHHTTCEEEECCCCHHHHHHHHHHHHH
T ss_pred CeEEECCHHHHHHHHHcCCcEEEEecCHHHHHHHHHHHHH
Confidence 7777665433222221 2234 444468888888888764
No 220
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=29.13 E-value=1.2e+02 Score=25.76 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCceEEecCCCCHH--HHhhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 94 QIQEAAEKLKIVVRVYPGRDHAD--LIFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 94 ~l~~~~~~~~l~~~v~g~~~~~~--~~~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
.+++.+.++++.+.-.....+.+ +.++. .|++|+.++..-++-.+++..-.|+--|.
T Consensus 49 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~iNiH 109 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGCVNVH 109 (314)
T ss_dssp HHHHHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCEEEEE
T ss_pred HHHHHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCEEEec
Confidence 46677888877632123333333 44443 47777665554455555544444443333
No 221
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=29.01 E-value=1.6e+02 Score=20.95 Aligned_cols=103 Identities=7% Similarity=-0.006 Sum_probs=55.4
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh---CCEEEcC-CCCCcchHHHHHHHh---cCCeEEeec
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD---YKVFLNP-STTDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~---adv~v~p-s~~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
.+++|+.+.+. ...+...... +..+.........-..+.. .|++++- ...+.-|+.+++.+. ..+|||...
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 46677766433 3334444432 3332222222111133332 3776653 333555667766553 467776544
Q ss_pred C-CC----ccccccC-CCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQF-PNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~-~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+ ..+++.. +.+++..+|..++..
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~ 123 (151)
T 3kcn_A 84 GNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQ 123 (151)
T ss_dssp CGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHH
Confidence 3 22 2344555 5677765 999999999998874
No 222
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=28.64 E-value=77 Score=24.62 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=39.7
Q ss_pred EEEcCCCCCcchHHHHHHH-hcCCeEEeecCCC---ccccccC------CCeEeec-CHHHHHHHHHHHH
Q 023072 124 VFLNPSTTDVVCTTTAEAL-AMGKIVVCANHPS---NDFFKQF------PNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAm-a~G~PVV~s~~~~---~e~i~~~------~~g~l~~-d~~~l~~~i~~ll 182 (287)
+.|+|.-+-..+..+.+|+ +.++|+|=-.... +|.+.+. ..|.++. -.+...-++..++
T Consensus 82 IIINpgAyTHtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~S~is~~a~GvI~G~G~~gY~lAl~al~ 151 (176)
T 2c4w_A 82 IIINPGAFSHTSIAIADAIMLAGKPVIEVHLTNIQAREEFRKNSYTGAACGGVIMGFGPLGYNMALMAMV 151 (176)
T ss_dssp EEEECGGGGGTCHHHHHHHHTSSSCEEEEESSCGGGSCGGGTCCHHHHHSSEEEESSTTHHHHHHHHHHH
T ss_pred EEECcchhccchHHHHHHHHhCCCCEEEEEecCcccccccccccccccceeEEEEecCHHHHHHHHHHHH
Confidence 6788888888899999998 4688999766644 6655442 3566665 5555555555543
No 223
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=28.51 E-value=1.5e+02 Score=20.63 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=55.9
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh--------cCCeE
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--------MGKIV 148 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma--------~G~PV 148 (287)
.+++|+.+.+. ...+.......+..+.+.......-..+. ..|+++.=.. .+.-|+.+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 46777766443 34455555555544333322111113333 3577776433 2445677777664 24566
Q ss_pred EeecC-CC-ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 149 VCANH-PS-NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 149 V~s~~-~~-~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
|.... .. ......+..+++.. +.+++.+++..++..
T Consensus 91 i~~s~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRPGAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCCCSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHHhCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 55433 22 22223444567765 999999999998754
No 224
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.49 E-value=1.5e+02 Score=20.65 Aligned_cols=102 Identities=8% Similarity=-0.022 Sum_probs=55.8
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeecC-
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH- 153 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~~- 153 (287)
+++|+.+.+. ...+.......+..+.........-..+. ..|++++=.. .+.-|+.+++.+. ..+|||....
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5677776554 34455555444433222221111113333 3577765332 3445677776664 4567665433
Q ss_pred CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 154 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 154 ~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
.. .+.+..+..+++.. +.+++...+..++.
T Consensus 86 ~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 32 33445566777775 99999999988765
No 225
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=28.25 E-value=1.4e+02 Score=20.04 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=53.7
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCC-CcchHHHHHHH---hcCCeEEeecC-
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTT-DVVCTTTAEAL---AMGKIVVCANH- 153 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~-E~~~~~~~EAm---a~G~PVV~s~~- 153 (287)
++.|+.+.+. ...+.......+..+.........-..+.. .|+++.-... +.-|..+++.+ ..++|+|.-..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 4566666554 445566555555444333222222233332 4766653332 22233444444 34567665433
Q ss_pred CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 ~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. ...+..+..+++.. +.+++...+..++..
T Consensus 85 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 121 (124)
T 1dc7_A 85 SDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (124)
T ss_dssp TTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHh
Confidence 22 33444455566654 999999999888764
No 226
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=28.24 E-value=2.6e+02 Score=23.80 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=43.8
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..++++++-+-+... +. ..++++ ...++ .+.++++. ..|+++..+....-.-.+..|+..|++|+|-+.
T Consensus 27 ~~~~~~l~av~d~~~-~~---~~~~~~-~~~~~---~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP 97 (358)
T 3gdo_A 27 VLDEYQISKIMTSRT-EE---VKRDFP-DAEVV---HELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKP 97 (358)
T ss_dssp TCTTEEEEEEECSCH-HH---HHHHCT-TSEEE---SSTHHHHTCTTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESS
T ss_pred hCCCeEEEEEEcCCH-HH---HHhhCC-CCceE---CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecC
Confidence 347788776655432 22 344443 23344 33346777 578888877665555567799999999999654
No 227
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=28.20 E-value=2.4e+02 Score=23.77 Aligned_cols=64 Identities=9% Similarity=0.034 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCCC
Q 023072 68 LELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPSTT 131 (287)
Q Consensus 68 l~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~~ 131 (287)
+++++...-.....+.+|+|.+.- -.-+..+....+..+.+... ..+..+..+.||++|...-.
T Consensus 147 ~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~ 212 (288)
T 1b0a_A 147 VTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGK 212 (288)
T ss_dssp HHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHHHHCSEEEECSCC
T ss_pred HHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHHHHhccCCEEEECCCC
Confidence 344433333345678999999864 45566667777877777543 34455899999999986543
No 228
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=28.17 E-value=1.9e+02 Score=21.79 Aligned_cols=101 Identities=11% Similarity=0.001 Sum_probs=58.0
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhhh--CCEEEcC-CCCCcchHHHHHHHh---cCCeEEe
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNP-STTDVVCTTTAEALA---MGKIVVC 150 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~--adv~v~p-s~~E~~~~~~~EAma---~G~PVV~ 150 (287)
.++.|+.+.+. ...+.......+..+... ...+ ..+.. .|++++= ...+.-|+.+++.+. .++|||.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETF---DCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEE---SSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEc---CCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46777766443 445666666555443322 2222 33332 3666543 233456777777764 3677765
Q ss_pred ecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 151 ANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 151 s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
-.. .. ...+..+..+++.. +.+++..++..++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 433 22 33444555667765 999999999988764
No 229
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=28.10 E-value=2.1e+02 Score=25.81 Aligned_cols=70 Identities=9% Similarity=0.108 Sum_probs=47.3
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCc-eEEecCCCCHHHHhh--hCCEEEcCCCCCcchHHHHHHHhcC------CeEE
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVYPGRDHADLIFH--DYKVFLNPSTTDVVCTTTAEALAMG------KIVV 149 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~-~~v~g~~~~~~~~~~--~adv~v~ps~~E~~~~~~~EAma~G------~PVV 149 (287)
++++++-+-+. +.+..++.+++++.. .+++ .+.++++. ..|+++..+....-.-.+.+|+..| ++|+
T Consensus 67 ~~~~lvav~d~-~~~~a~~~a~~~g~~~~~~~---~d~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl 142 (479)
T 2nvw_A 67 SQFQIVALYNP-TLKSSLQTIEQLQLKHATGF---DSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLY 142 (479)
T ss_dssp TTEEEEEEECS-CHHHHHHHHHHTTCTTCEEE---SCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEE
T ss_pred CCeEEEEEEeC-CHHHHHHHHHHcCCCcceee---CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEE
Confidence 67877755543 346677778887753 2333 33456775 5788888776554455567899999 9999
Q ss_pred eec
Q 023072 150 CAN 152 (287)
Q Consensus 150 ~s~ 152 (287)
|-.
T Consensus 143 ~EK 145 (479)
T 2nvw_A 143 VEW 145 (479)
T ss_dssp EES
T ss_pred EeC
Confidence 965
No 230
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=28.04 E-value=50 Score=24.13 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=26.8
Q ss_pred HHHHHhcCCeEEEEEeCCcC----HHHHHHHHHhcCCceEEe
Q 023072 72 DDHQKELAGLEVDLYGNGED----FNQIQEAAEKLKIVVRVY 109 (287)
Q Consensus 72 ~~l~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~l~~~v~ 109 (287)
..+....|...++|+|.|.. ..++++...+.|+.+.+.
T Consensus 60 ~~l~~~~p~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m 101 (128)
T 2fi9_A 60 SRVLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTM 101 (128)
T ss_dssp HHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEe
Confidence 33333445578899999876 456777788888877775
No 231
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=27.98 E-value=1.5e+02 Score=20.43 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=57.1
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeec-
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCAN- 152 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~- 152 (287)
.+++|+.+.+. ...++......+..+.........-..+. ..|++++-.. .+.-|+.+++.+. .++|+|.-.
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 45677766443 34556666655544332222111113333 2477665332 2345666666653 367776543
Q ss_pred CCC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 153 HPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 153 ~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
... .+.+..+..+++.. +.+++..++..++.
T Consensus 84 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 333 33455666778775 99999999988775
No 232
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=27.94 E-value=1.2e+02 Score=24.08 Aligned_cols=124 Identities=14% Similarity=0.140 Sum_probs=68.0
Q ss_pred cccccCHHHHHHHHHHHHHhcCCeEEEEE---eCCcCHHHHHHHHHhcCC-ceEEecCCCCHHHHhhhCCEEE-------
Q 023072 58 MVWSKGYKELLELLDDHQKELAGLEVDLY---GNGEDFNQIQEAAEKLKI-VVRVYPGRDHADLIFHDYKVFL------- 126 (287)
Q Consensus 58 ~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~---G~g~~~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~adv~v------- 126 (287)
+.-.|-.+.+-+....|.++.-+++|-|- |.-+ -.+.-+..+.+. +..++ ..+....-+..+|+.+
T Consensus 56 mAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMP--GhMNVLLAEA~VPYd~v~-EMdeIN~df~~tDv~lVIGANDv 132 (207)
T 1djl_A 56 LCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMP--GQLNVLLAEAGVPYDIVL-EMDEINHDFPDTDLVLVIGANDT 132 (207)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSST--THHHHHHHHTTCCGGGEE-EHHHHGGGGGGCSEEEEESCCGG
T ss_pred HHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCC--CCCcEEEEEeCCCHHHHh-hHHHHhhhhhhcCEEEEeccccc
Confidence 44445555555555555555445555543 3222 222223333322 11111 0111114566778865
Q ss_pred -cCCCCC-----cchHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 127 -NPSTTD-----VVCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 127 -~ps~~E-----~~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
+|+-.| -+|+.++|..-+..-+|+-.. +| ++++-...+-.++.|.++..+.|...+..
T Consensus 133 VNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~~~l~~ 203 (207)
T 1djl_A 133 VNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQAKVRE 203 (207)
T ss_dssp GCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHHHHHHT
T ss_pred cCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHHHHHHH
Confidence 344321 288999999988876666554 22 66666655668888999888888877764
No 233
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=27.90 E-value=2.3e+02 Score=24.85 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=54.1
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecC----------CCCHHHHhhhCCEEEc--CCCCC----c---chHHHHH
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG----------RDHADLIFHDYKVFLN--PSTTD----V---VCTTTAE 140 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~----------~~~~~~~~~~adv~v~--ps~~E----~---~~~~~~E 140 (287)
+-++-|+|-|.--..+.+.+..+|.++.++.. ....++++..||++++ |...+ + +.-..++
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~ 198 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIR 198 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHH
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHh
Confidence 56899999988777788888888887766521 1223389999999875 44444 3 5566788
Q ss_pred HHhcCCeEEeecCCC
Q 023072 141 ALAMGKIVVCANHPS 155 (287)
Q Consensus 141 Ama~G~PVV~s~~~~ 155 (287)
.|--|.-+|-+..|+
T Consensus 199 ~mk~gailIN~aRG~ 213 (381)
T 3oet_A 199 RLKPGAILINACRGP 213 (381)
T ss_dssp HSCTTEEEEECSCGG
T ss_pred cCCCCcEEEECCCCc
Confidence 887888888777665
No 234
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=27.67 E-value=1.5e+02 Score=20.18 Aligned_cols=104 Identities=8% Similarity=-0.043 Sum_probs=58.2
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCC-ceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHhc-----CCeEE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALAM-----GKIVV 149 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma~-----G~PVV 149 (287)
..++.|+.+.+. ...+.......+. .+.........-..+.. .|+++.-.. .+.-|..+++.+.. .+|+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 346777766443 3455666666554 22222221111133332 477665332 34467778887753 56766
Q ss_pred ee-cCCC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 150 CA-NHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 150 ~s-~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
.. .... .+.+..+..+++.. +.+++.+++..++.
T Consensus 84 ~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 84 MVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp EEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 54 3333 33455566777765 99999999988764
No 235
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=27.47 E-value=69 Score=25.35 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=45.0
Q ss_pred HHhhhCCEEE--------cCCCCC--c---chHHHHHHHhcCCeEEeecC--CC-----ccccccCCCeEeecCHHHHHH
Q 023072 117 LIFHDYKVFL--------NPSTTD--V---VCTTTAEALAMGKIVVCANH--PS-----NDFFKQFPNCRTYDDRNGFVE 176 (287)
Q Consensus 117 ~~~~~adv~v--------~ps~~E--~---~~~~~~EAma~G~PVV~s~~--~~-----~e~i~~~~~g~l~~d~~~l~~ 176 (287)
.-+..+|+.+ +|+-.| + +|+.++|..-+..-+|+-.. +| ++++-...+-.++.|.++..+
T Consensus 117 ~df~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~ 196 (203)
T 2fsv_C 117 SSFQTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTE 196 (203)
T ss_dssp GGSTTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHH
T ss_pred hhhhhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHH
Confidence 4456667754 465432 2 89999999988877766554 22 666666556688889888888
Q ss_pred HHHHHH
Q 023072 177 ATLKAL 182 (287)
Q Consensus 177 ~i~~ll 182 (287)
.|...+
T Consensus 197 ~l~~~l 202 (203)
T 2fsv_C 197 QIVQAM 202 (203)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 776643
No 236
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=27.36 E-value=80 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.3
Q ss_pred CEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 123 KVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 123 dv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
|+++.....+ -..++.||.-+|+|||+--.
T Consensus 160 dll~V~Dp~~-e~~Ai~EA~~l~IPvIaivD 189 (256)
T 2vqe_B 160 DAIFVVDPTK-EAIAVREARKLFIPVIALAD 189 (256)
T ss_dssp SEEEESCTTT-THHHHHHHHHTTCCCEECCC
T ss_pred CEEEEeCCcc-chHHHHHHHHcCCCEEEEec
Confidence 6655543322 25889999999999998644
No 237
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=27.13 E-value=2.1e+02 Score=25.25 Aligned_cols=93 Identities=6% Similarity=0.024 Sum_probs=57.1
Q ss_pred cEEEEEe----cccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCc-eEEecCCCCHHHHhh--hCC
Q 023072 51 GAYYIGK----MVWSKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIV-VRVYPGRDHADLIFH--DYK 123 (287)
Q Consensus 51 ~i~~vG~----~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~-~~v~g~~~~~~~~~~--~ad 123 (287)
+|.++|- -.-.+ ..+.++... .++++++-+-+. +.+..++.+++++.. +.++ .+.++++. ..|
T Consensus 22 rvgiIG~g~~gG~~g~---~~~~~l~~~---~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~---~~~~~ll~~~~vD 91 (438)
T 3btv_A 22 RVGFVGLNAAKGWAIK---THYPAILQL---SSQFQITALYSP-KIETSIATIQRLKLSNATAF---PTLESFASSSTID 91 (438)
T ss_dssp EEEEESCCTTSSSTTT---THHHHHHHT---TTTEEEEEEECS-SHHHHHHHHHHTTCTTCEEE---SSHHHHHHCSSCS
T ss_pred EEEEEcccCCCChHHH---HHHHHHHhc---CCCeEEEEEEeC-CHHHHHHHHHHcCCCcceee---CCHHHHhcCCCCC
Confidence 5777775 22222 234444322 167777655543 346677777777753 2333 33456776 479
Q ss_pred EEEcCCCCCcchHHHHHHHhcC------CeEEeecC
Q 023072 124 VFLNPSTTDVVCTTTAEALAMG------KIVVCANH 153 (287)
Q Consensus 124 v~v~ps~~E~~~~~~~EAma~G------~PVV~s~~ 153 (287)
+++..+....-.-.+.+|+..| ++|+|-+.
T Consensus 92 ~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP 127 (438)
T 3btv_A 92 MIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWA 127 (438)
T ss_dssp EEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESS
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCc
Confidence 9888776555455567899999 99999753
No 238
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=26.75 E-value=2.2e+02 Score=24.09 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=38.8
Q ss_pred cCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCCCC
Q 023072 78 LAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPSTT 131 (287)
Q Consensus 78 ~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps~~ 131 (287)
....+.+|+|.+.- -.-+..+....+..+.+... ..+..+..+.||++|...-.
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHHHHhccCCEEEECCCC
Confidence 34678999999864 45566666777877777543 44555899999999986554
No 239
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=26.65 E-value=2.3e+02 Score=22.10 Aligned_cols=105 Identities=8% Similarity=-0.052 Sum_probs=60.4
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHhc--CCeEEeecC-
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALAM--GKIVVCANH- 153 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma~--G~PVV~s~~- 153 (287)
.+++|+.+.+. ...+.......+..+.........-..+. ..|++++-. ..+.-|+.+++.+.. ++|||.-..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 46677766443 34556666655655433333222223333 357766533 234456777776643 677765432
Q ss_pred CC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 154 PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 154 ~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
.. ...+..+..+++.. +.+++..+|..++...
T Consensus 86 ~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 86 TDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp TCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 22 33455666777765 9999999999988753
No 240
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=26.55 E-value=1.2e+02 Score=21.39 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCceEEe--cCC---CCH-HHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCe
Q 023072 92 FNQIQEAAEKLKIVVRVY--PGR---DHA-DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNC 165 (287)
Q Consensus 92 ~~~l~~~~~~~~l~~~v~--g~~---~~~-~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g 165 (287)
-+.|++.++++|..+.+- |.. +.. ++-+..||++|+.+-.+.-. .|- ..|+||+-+.... .+
T Consensus 22 AeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~---~~R-F~gk~v~~~~v~~--~i------ 89 (106)
T 2m1z_A 22 AQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRN---KER-FDGKVVLEVPVSA--PI------ 89 (106)
T ss_dssp HHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCST---HHH-HTTSEEEEECTTH--HH------
T ss_pred HHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccc---hhc-cCCCcEEEEcHHH--HH------
Confidence 356888899999988883 432 222 26789999999876544311 122 2399999876532 22
Q ss_pred EeecCHHHHHHHHHHHHh
Q 023072 166 RTYDDRNGFVEATLKALA 183 (287)
Q Consensus 166 ~l~~d~~~l~~~i~~ll~ 183 (287)
.|++.+.+....++.
T Consensus 90 ---~~~~~~l~~a~~~~~ 104 (106)
T 2m1z_A 90 ---KDAEKVINAALALID 104 (106)
T ss_dssp ---HCHHHHHHHHHHHHT
T ss_pred ---HCHHHHHHHHHHHHh
Confidence 256777666666554
No 241
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=26.44 E-value=1.1e+02 Score=24.34 Aligned_cols=63 Identities=14% Similarity=-0.013 Sum_probs=41.7
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
..++.+-|-.+. .+.+.+.+..+|.. +... ...+.-+|.+...- ..+++.|++.|+|||..+.
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~--v~~~-------~~~~THLI~~~~~r--T~K~l~A~~~g~~IVs~~W 79 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGE--VAES-------AQKCTHLIASKVTR--TVKFLTAISVVKHIVTPEW 79 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCE--ECSS-------GGGCSEEECSSCCC--CHHHHHHTTTCSEEECHHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCE--EeCC-------CCCceEEEECCCCC--CHHHHHHHHcCCCEecHHH
Confidence 455555564332 35677888888754 3211 26777888775322 2689999999999999876
No 242
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.41 E-value=1.5e+02 Score=19.77 Aligned_cols=103 Identities=8% Similarity=-0.061 Sum_probs=54.3
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh--cCCeEEeecC-C
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA--MGKIVVCANH-P 154 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma--~G~PVV~s~~-~ 154 (287)
++.|+.+.+. ...+.......+..+.........-..+. ..|+++.=.. .+.-|..+++.+. ...|+|.... .
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4556655432 34455555555544322221111112222 3577665322 2334566665553 4677765433 3
Q ss_pred C----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 155 S----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 155 ~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. ...+..+..+++.. +.+++...+..++..
T Consensus 83 ~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 83 SEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred chHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 3 22345566777765 999999999888764
No 243
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=26.36 E-value=1.7e+02 Score=24.85 Aligned_cols=92 Identities=9% Similarity=-0.029 Sum_probs=47.0
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC----------HHHHHHHHHhcCCceEEecCCCCHH--HH
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED----------FNQIQEAAEKLKIVVRVYPGRDHAD--LI 118 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~----------~~~l~~~~~~~~l~~~v~g~~~~~~--~~ 118 (287)
+|+|+|.-. ..+.++..|.+. +.+++.+=..++ ...+++.+.++++.+.-.....+.+ +.
T Consensus 9 rivf~Gt~~------fa~~~L~~L~~~--~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~ 80 (318)
T 3q0i_A 9 RIVFAGTPD------FAARHLAALLSS--EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESKQQ 80 (318)
T ss_dssp EEEEECCSH------HHHHHHHHHHTS--SSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHHHH
T ss_pred EEEEEecCH------HHHHHHHHHHHC--CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHHHH
Confidence 688888632 444555555443 234333322222 1246778888887742122333333 44
Q ss_pred hhh--CCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 119 FHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 119 ~~~--adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
++. .|++|+.++..-++-.+++..-.|+--|.
T Consensus 81 l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiH 114 (318)
T 3q0i_A 81 LAALNADLMVVVAYGLLLPKVVLDTPKLGCINVH 114 (318)
T ss_dssp HHTTCCSEEEESSCCSCCCHHHHTSSTTCEEEEE
T ss_pred HHhcCCCEEEEeCccccCCHHHHhhCcCCEEEeC
Confidence 443 47777766655555555554444443333
No 244
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=26.33 E-value=2e+02 Score=21.43 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=53.4
Q ss_pred HHHHHHhcCCceEEecCCCCHH--HHhhh----C-CEEEcCCCCCcchHHHHHHHh-cCCeEEeecCCC---cccc----
Q 023072 95 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEALA-MGKIVVCANHPS---NDFF---- 159 (287)
Q Consensus 95 l~~~~~~~~l~~~v~g~~~~~~--~~~~~----a-dv~v~ps~~E~~~~~~~EAma-~G~PVV~s~~~~---~e~i---- 159 (287)
+++.+.+++..+.++..-...+ +.++. + .+.+||.-+-..+..+.+|++ .++|+|=-.... +|.+
T Consensus 34 l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~~~~dgiiiNpgA~THtSvAlrDAl~~v~~P~VEVHiSNi~aRE~FRh~S 113 (143)
T 1gqo_A 34 LFQFAEALHIQLTFFQSNHEGDLIDAIHEAEEQYSGIVLNPGALSHYSYAIRDAVSSISLPVVEVHLSNLYAREEFRHQS 113 (143)
T ss_dssp HHHHHHHHTCEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHHHHHHHHTSCSCEEEEESSCGGGSCGGGGCC
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEEccchhccccHHHHHHHHhCCCCEEEEEecCccccccccccc
Confidence 4455566666655553222222 33333 3 367889888888999999984 688998765543 5544
Q ss_pred --ccCCCeEeec-CHHHHHHHHHHHH
Q 023072 160 --KQFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 160 --~~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
.+...|.++. -.+...-++..++
T Consensus 114 ~~s~~a~GvI~G~G~~gY~lAl~~~~ 139 (143)
T 1gqo_A 114 VIAPVAKGQIVGLGAEGYKLAVRYLL 139 (143)
T ss_dssp SSGGGSSEEEESSTTHHHHHHHHHHH
T ss_pred ccccceeEEEEecCHHHHHHHHHHHH
Confidence 3334566665 6666666666554
No 245
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=26.28 E-value=1.4e+02 Score=23.45 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=40.2
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecC
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~ 153 (287)
.++++.+-|-.+ +++++.+..+|.. +... +..+..+|.+.... ..+++.|++.|+|||..+.
T Consensus 11 ~~~~v~~sG~~~--~~~~~~i~~lGg~--~~~~-------~~~~THlI~~~~~r--t~K~l~a~~~g~~IV~~~W 72 (209)
T 2etx_A 11 TAPKVLFTGVVD--ARGERAVLALGGS--LAGS-------AAEASHLVTDRIRR--TVKFLCALGRGIPILSLDW 72 (209)
T ss_dssp -CCEEEECSSCC--HHHHHHHHHTTCE--ECSS-------TTTCSEEECSSCCC--SHHHHHHHHHTCCEECTHH
T ss_pred CCcEEEEeCCCc--HHHHHHHHHCCCE--EeCC-------CCCceEEEECCCCC--CHHHHHHHhcCCccccHHH
Confidence 356666666543 4567788887753 3222 12466677765322 4789999999999998865
No 246
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=26.21 E-value=2.2e+02 Score=21.85 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=57.6
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHh--cCCeEEeecCC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA--MGKIVVCANHP 154 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma--~G~PVV~s~~~ 154 (287)
.+++|+.+.+. ...+.......+..+.........-..+. ..|++++-. ..+.-|+.+++.+. ..+|||.-...
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 45677765443 34556666655544332221111113332 357766532 23445666666654 36777765442
Q ss_pred C-----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 155 S-----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 155 ~-----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. ...+..+..+++.. +.+++..++..++..
T Consensus 85 ~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 2 22344556667665 999999999999875
No 247
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=26.08 E-value=58 Score=27.07 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=21.8
Q ss_pred HHHHHHHHh-cCCeEEEEEeCCcCHHHHHHHHHhcCCc
Q 023072 69 ELLDDHQKE-LAGLEVDLYGNGEDFNQIQEAAEKLKIV 105 (287)
Q Consensus 69 ~a~~~l~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~l~ 105 (287)
.+|+.+.++ .+++.++++|+|.+.++. ++.++..
T Consensus 218 sCFerI~~RFG~k~~yvvIGDG~eEe~A---Ak~~n~P 252 (274)
T 3geb_A 218 SCFERIMQRFGRKAVYVVIGDGVEEEQG---AKKHNMP 252 (274)
T ss_dssp HHHHHHHHHHCTTSEEEEEESSHHHHHH---HHHTTCC
T ss_pred HHHHHHHHHhCCCceEEEECCCHHHHHH---HHHcCCC
Confidence 355555544 479999999999874433 3445543
No 248
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=26.04 E-value=2.3e+02 Score=21.84 Aligned_cols=105 Identities=10% Similarity=-0.079 Sum_probs=60.2
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHh---cCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~ 152 (287)
..++.|+.+.+. ...+.......+..+.........-..+. ..|++++-. ..+.-|+.+++.+. ..+|||.-.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356777766443 44566666665544332221111113333 347766533 33445777777764 467777654
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
. .. .+.+..+..+++.. +.+++..++..++..
T Consensus 87 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (233)
T 1ys7_A 87 ARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125 (233)
T ss_dssp CCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 22 33455566777775 999999999988753
No 249
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=25.43 E-value=99 Score=26.19 Aligned_cols=40 Identities=15% Similarity=-0.035 Sum_probs=29.0
Q ss_pred HHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeecCCC
Q 023072 116 DLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS 155 (287)
Q Consensus 116 ~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~~~~ 155 (287)
++++..+|+.+..+....---.+..++..|++||++...+
T Consensus 53 ~~ll~~~DvViiatp~~~h~~~~~~al~aG~~Vv~ekp~~ 92 (320)
T 1f06_A 53 DKHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNH 92 (320)
T ss_dssp GGTTTTCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCG
T ss_pred HHHhcCCCEEEEcCCcHHHHHHHHHHHHCCCEEEECCCCc
Confidence 3455788999887766543344568899999999987644
No 250
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=25.31 E-value=1.8e+02 Score=25.83 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=25.7
Q ss_pred HHhhhCCEEEcCCCCCc------chHHHHHHHhcCCeEEeecC
Q 023072 117 LIFHDYKVFLNPSTTDV------VCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~------~~~~~~EAma~G~PVV~s~~ 153 (287)
+.+..+|++|......+ +.-..++.|.-|.-||-...
T Consensus 271 e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 56778999987543222 55678888888888876653
No 251
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=25.20 E-value=1.7e+02 Score=23.92 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=59.7
Q ss_pred HHHHHHHhcCC-ceEEe--cCCCCHHHH--hh----hCCEEEcCCC---CCcchHHHHHHHhcCCeEEeecCCCcccccc
Q 023072 94 QIQEAAEKLKI-VVRVY--PGRDHADLI--FH----DYKVFLNPST---TDVVCTTTAEALAMGKIVVCANHPSNDFFKQ 161 (287)
Q Consensus 94 ~l~~~~~~~~l-~~~v~--g~~~~~~~~--~~----~adv~v~ps~---~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~ 161 (287)
..-.+.++.|. .++|+ ++..+.+++ +. ..++.+=|+- .|.|.-.+-.++-.|+|-|.+.+-+ -+.|
T Consensus 149 tAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYs--sIID 226 (249)
T 3m0z_A 149 TAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYS--SIID 226 (249)
T ss_dssp HHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCG--GGBC
T ss_pred HHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccc--eecc
Confidence 34456777776 67775 677777622 22 2377666764 3789999999999999999886643 2344
Q ss_pred CCCeEeec-CHHHHHHHHHHHH
Q 023072 162 FPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 162 ~~~g~l~~-d~~~l~~~i~~ll 182 (287)
..+|..-+ |..++.+.+++++
T Consensus 227 k~TG~TrpedV~~ll~~~K~l~ 248 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQLV 248 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHhh
Confidence 45776654 8888888777765
No 252
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=25.05 E-value=3e+02 Score=22.95 Aligned_cols=63 Identities=6% Similarity=0.040 Sum_probs=43.3
Q ss_pred cCHHHHHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHHHHhhhCCEEEcCC
Q 023072 62 KGYKELLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHADLIFHDYKVFLNPS 129 (287)
Q Consensus 62 Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~~~~~~adv~v~ps 129 (287)
+|+..+++-+. ...-+.+|+|.+.- -.-+..+....+..+.+... ..+.++..+.||++|...
T Consensus 137 ~gv~~lL~~~~-----l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 137 RAVIDIMDYYG-----YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp HHHHHHHHHHT-----CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHHHHHHHSSEEEECS
T ss_pred HHHHHHHHHhC-----cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHHHhhccCCEEEECC
Confidence 45555555543 35678999998753 45566666777878777543 445558999999999865
No 253
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=24.98 E-value=2.3e+02 Score=25.67 Aligned_cols=77 Identities=16% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecC--------------CCCHHHHhhhCCEEEcCCCC-CcchHHHHHHHh
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPG--------------RDHADLIFHDYKVFLNPSTT-DVVCTTTAEALA 143 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~--------------~~~~~~~~~~adv~v~ps~~-E~~~~~~~EAma 143 (287)
..-++.|+|.|.=-..+.+.++.+|.++.++.. ....++++..+|+++..+-. .-+.-..++.|-
T Consensus 246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~atgt~~lI~~e~l~~MK 325 (464)
T 3n58_A 246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMK 325 (464)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECCSSSSSBCHHHHHHSC
T ss_pred cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECCCCccccCHHHHhcCC
Confidence 456788888887556666677777876665521 11234788999999876433 235667788888
Q ss_pred cCCeEEeecCCC
Q 023072 144 MGKIVVCANHPS 155 (287)
Q Consensus 144 ~G~PVV~s~~~~ 155 (287)
-|.-+|-+..+.
T Consensus 326 ~GAILINvGRgd 337 (464)
T 3n58_A 326 DMCIVGNIGHFD 337 (464)
T ss_dssp TTEEEEECSSST
T ss_pred CCeEEEEcCCCC
Confidence 888777666544
No 254
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=24.97 E-value=2.3e+02 Score=25.41 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=53.0
Q ss_pred CCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC--------------CCHHHHhhhCCEEEcCCCC-CcchHHHHHHHh
Q 023072 79 AGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR--------------DHADLIFHDYKVFLNPSTT-DVVCTTTAEALA 143 (287)
Q Consensus 79 ~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~--------------~~~~~~~~~adv~v~ps~~-E~~~~~~~EAma 143 (287)
.+-++.|+|-|+=-..+...++.+|.++.++... ...++++..+|+++..+-. ..+.-..++.|.
T Consensus 219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~atgt~~lI~~e~l~~MK 298 (435)
T 3gvp_A 219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMK 298 (435)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHHHSC
T ss_pred cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECCCCcccCCHHHHHhcC
Confidence 4568899999886666667777788776655321 1223788899999986433 335667888888
Q ss_pred cCCeEEeecCCC
Q 023072 144 MGKIVVCANHPS 155 (287)
Q Consensus 144 ~G~PVV~s~~~~ 155 (287)
-|.-+|-...+.
T Consensus 299 ~gailINvgrg~ 310 (435)
T 3gvp_A 299 NSCIVCNMGHSN 310 (435)
T ss_dssp TTEEEEECSSTT
T ss_pred CCcEEEEecCCC
Confidence 887777766554
No 255
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=24.86 E-value=1.8e+02 Score=24.83 Aligned_cols=94 Identities=17% Similarity=0.050 Sum_probs=50.4
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC----------HHHHHHHHHhcCCceEEecCCCCHH--HH
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED----------FNQIQEAAEKLKIVVRVYPGRDHAD--LI 118 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~----------~~~l~~~~~~~~l~~~v~g~~~~~~--~~ 118 (287)
+|+|+|.-. ..+.++..|.+...++..++. .++ ...+++.+.++++.+.-.......+ +.
T Consensus 6 rIvf~Gtp~------fa~~~L~~L~~~~~~v~~Vvt--~pd~~~gRg~~l~~~pv~~~A~~~gIpv~~~~~~~~~~~~~~ 77 (317)
T 3rfo_A 6 KVVFMGTPD------FSVPVLRRLIEDGYDVIGVVT--QPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEK 77 (317)
T ss_dssp EEEEECCST------THHHHHHHHHHTTCEEEEEEC--CCCCEETTTTEECCCHHHHHHHHTTCCEECCSCTTSHHHHHH
T ss_pred EEEEEeCCH------HHHHHHHHHHHCCCcEEEEEe--CCCcccCCCcccCCCHHHHHHHHcCCCEEccccCCCHHHHHH
Confidence 688998653 333444444443223333332 222 1347788888887742222333333 34
Q ss_pred hh--hCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 119 FH--DYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 119 ~~--~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
++ ..|++|+.++..-++-.+++..-.|+--|...
T Consensus 78 l~~~~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpS 113 (317)
T 3rfo_A 78 VLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHAS 113 (317)
T ss_dssp HHHHCCSEEEESSCCSCCCHHHHHSSTTCEEEEESS
T ss_pred HHhcCCCEEEEcCchhhCCHHHHhhCcCCEEEECCc
Confidence 43 35888887776666666666555555555443
No 256
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=24.82 E-value=1.8e+02 Score=20.38 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCeEEEEEeCCc--CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEe
Q 023072 79 AGLEVDLYGNGE--DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVC 150 (287)
Q Consensus 79 ~~~~l~i~G~g~--~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~ 150 (287)
.+..|+|.|.-. .++++++++..+|.. |.+.+. ...|++|.-.. .-+.++-.|...|+|||.
T Consensus 34 ~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~--v~~sVS------kkTd~LV~G~~--~g~sK~~kA~~lgI~Ii~ 97 (109)
T 2k6g_A 34 EGLIFVITGVLESIERDEAKSLIERYGGK--VTGNVS------KKTNYLVMGRD--SGQSKSDKAAALGTKIID 97 (109)
T ss_dssp TTCEEEEESBCSSCCHHHHHHHHHHTTCE--EESSCC------TTCCEEEECBC--CCHHHHHHHHHHTCEEEC
T ss_pred CCCEEEEeeeCCCCCHHHHHHHHHHcCCE--eeCccc------CCceEEEECCC--CChHHHHHHHHcCCeEEe
Confidence 356677777653 367777777776643 444443 34456555421 113677777777777764
No 257
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.76 E-value=2.2e+02 Score=21.32 Aligned_cols=72 Identities=15% Similarity=0.100 Sum_probs=42.0
Q ss_pred EEEEEeCCcCHH---HHHHHHHhcCCceEEec-CCCCHH---HHhhhCCEEEcCCCCCcch--HH-HHHHHhcCCeEEee
Q 023072 82 EVDLYGNGEDFN---QIQEAAEKLKIVVRVYP-GRDHAD---LIFHDYKVFLNPSTTDVVC--TT-TAEALAMGKIVVCA 151 (287)
Q Consensus 82 ~l~i~G~g~~~~---~l~~~~~~~~l~~~v~g-~~~~~~---~~~~~adv~v~ps~~E~~~--~~-~~EAma~G~PVV~s 151 (287)
++.++|.|.... .+.....+.+.++.++. ...... ..+..-|++|.-|..-... +. +-.|-..|.++|+-
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~I 120 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMAL 120 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEE
Confidence 789999987632 34444456777766664 221111 3344568988887763211 12 23455779988775
Q ss_pred cC
Q 023072 152 NH 153 (287)
Q Consensus 152 ~~ 153 (287)
-.
T Consensus 121 T~ 122 (187)
T 3sho_A 121 TD 122 (187)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 258
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.66 E-value=1.6e+02 Score=19.54 Aligned_cols=101 Identities=9% Similarity=0.064 Sum_probs=53.4
Q ss_pred EEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCC-CCcchHHHHHHHh---cCCeEEee-cC
Q 023072 82 EVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPST-TDVVCTTTAEALA---MGKIVVCA-NH 153 (287)
Q Consensus 82 ~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s-~~ 153 (287)
++.|+.+.+. ...+.......+..+.........-..+.. .|+++.=.. .+.-|..+++.+. ...|+|.- ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4566665443 344555556555443322221111133332 477665332 3445666666663 35666644 33
Q ss_pred CC--ccccccCCCeEeec--CHHHHHHHHHHHH
Q 023072 154 PS--NDFFKQFPNCRTYD--DRNGFVEATLKAL 182 (287)
Q Consensus 154 ~~--~e~i~~~~~g~l~~--d~~~l~~~i~~ll 182 (287)
.. ......+..+++.. +.+++..++..++
T Consensus 83 ~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 32 33444455677765 8899998888764
No 259
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=24.51 E-value=1.8e+02 Score=20.11 Aligned_cols=106 Identities=10% Similarity=-0.054 Sum_probs=58.0
Q ss_pred CCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh---hCCEEEcCCC-CCcchHHHHHHHhc---CCeEEe
Q 023072 79 AGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH---DYKVFLNPST-TDVVCTTTAEALAM---GKIVVC 150 (287)
Q Consensus 79 ~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~---~adv~v~ps~-~E~~~~~~~EAma~---G~PVV~ 150 (287)
+..+++|+.+.+. ...+.......+..+.........-..+. ..|++++-.. .+.-|+.+++.+.. .+|+|.
T Consensus 14 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ 93 (138)
T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLI 93 (138)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 4567777776443 44566666666654332222111113333 3577765333 34457778887753 577766
Q ss_pred ec-C-CCccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 151 AN-H-PSNDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 151 s~-~-~~~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
-. . ...+.......+++.. +.+++...+..++..
T Consensus 94 ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 94 LTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp EESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred EECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 54 3 3222211113456654 999999999887764
No 260
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.22 E-value=1.7e+02 Score=19.82 Aligned_cols=102 Identities=7% Similarity=-0.006 Sum_probs=58.1
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH---HHhhh--CCEEEcCCC-CCcchHHHHHHHh-----cCCeE
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD---LIFHD--YKVFLNPST-TDVVCTTTAEALA-----MGKIV 148 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~---~~~~~--adv~v~ps~-~E~~~~~~~EAma-----~G~PV 148 (287)
.++.|+.+.+. ...+.......+.. .+. .....+ ..+.. .|+++.=.. .+.-|..+++.+. ..+|+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~-~v~-~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~i 84 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFK-QIT-AAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAF 84 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCS-CEE-CCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCc-EEE-ecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 46777776443 34556666655541 222 222222 33333 477765332 3445777888774 35677
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
|.... +. .+.+..+..+++.. +.+++..++..++..
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 85 IILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 65433 33 23444556677765 999999999988753
No 261
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=24.12 E-value=2.8e+02 Score=22.31 Aligned_cols=62 Identities=13% Similarity=-0.003 Sum_probs=34.3
Q ss_pred hCCEEEc-CCCCCcchHHHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhC
Q 023072 121 DYKVFLN-PSTTDVVCTTTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAE 184 (287)
Q Consensus 121 ~adv~v~-ps~~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~ 184 (287)
..|.+|+ |...+...-.+-++...|+|||+.+...... ........++.+....+...+++.
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~--~~~~~V~~d~~~~g~~~~~~l~~~ 123 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDS--HAHSFLGTNNYNAGMNAAYKMAEL 123 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCTTS--CCSCEEECCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCCCCC--ceeEEECcCHHHHHHHHHHHHHHH
Confidence 3565554 4444444445666778899999988643210 011223344555555566666654
No 262
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.10 E-value=2e+02 Score=23.77 Aligned_cols=88 Identities=13% Similarity=0.034 Sum_probs=61.2
Q ss_pred HHHHHHhcCC-ceEEe--cCCCCHHH--Hhhh----CCEEEcCCC---CCcchHHHHHHHhcCCeEEeecCCCccccccC
Q 023072 95 IQEAAEKLKI-VVRVY--PGRDHADL--IFHD----YKVFLNPST---TDVVCTTTAEALAMGKIVVCANHPSNDFFKQF 162 (287)
Q Consensus 95 l~~~~~~~~l-~~~v~--g~~~~~~~--~~~~----adv~v~ps~---~E~~~~~~~EAma~G~PVV~s~~~~~e~i~~~ 162 (287)
.-.+.++.|. .++|+ ++..+.++ .+.+ .++.+=|+- .|.|.-.+-.++-.|+|-|.+.+-+ -+.|.
T Consensus 173 Aiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYs--SIIDk 250 (275)
T 3m6y_A 173 AIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYS--SIIDK 250 (275)
T ss_dssp HHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECG--GGBCT
T ss_pred HHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccc--eeccC
Confidence 4456677766 67775 67777662 2222 277666764 3789999999999999998776533 34445
Q ss_pred CCeEeec-CHHHHHHHHHHHHhC
Q 023072 163 PNCRTYD-DRNGFVEATLKALAE 184 (287)
Q Consensus 163 ~~g~l~~-d~~~l~~~i~~ll~~ 184 (287)
.+|..-+ |..++.+.+++++..
T Consensus 251 ~TG~TrpedV~~ll~~~K~l~~~ 273 (275)
T 3m6y_A 251 ETGNTKVEAVRELLAVVKKLVDQ 273 (275)
T ss_dssp TTCCBCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 6786654 899999999888864
No 263
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=24.02 E-value=2.4e+02 Score=21.50 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=58.5
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCC-CCCcchHHHHHHHh---cCCeEEeecC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPS-TTDVVCTTTAEALA---MGKIVVCANH 153 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps-~~E~~~~~~~EAma---~G~PVV~s~~ 153 (287)
.++.|+.+.+. ...+.......+..+.........-..+. ..|++++-. ..+.-|+.+++.+. ..+|||.-..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 35666765443 34455556655544332221111113333 347766533 23445677777664 3677776544
Q ss_pred -CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. ...+..+..+++.. +.+++..++..++..
T Consensus 83 ~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 83 LSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp SCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 32 33455566777765 999999999998764
No 264
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=23.93 E-value=2.6e+02 Score=23.65 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCcC-HHHHHHHHHhcCCceEEecC-CCCHH--HHhhhCCEEEcCCCC
Q 023072 67 LLELLDDHQKELAGLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPG-RDHAD--LIFHDYKVFLNPSTT 131 (287)
Q Consensus 67 ll~a~~~l~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~-~~~~~--~~~~~adv~v~ps~~ 131 (287)
.++.++...-....-+.+|+|.+.- -.-+..+....+..+.+... ..+.+ +..+.||++|...-.
T Consensus 152 v~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 152 VIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHHHHHHHTCSEEEECSCC
T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchhhhhhccCCEEEECCCC
Confidence 3344443322334678999997663 45566666777877777654 44455 789999999986543
No 265
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=23.75 E-value=2.5e+02 Score=21.49 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=55.3
Q ss_pred EEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCCCCCcchHHHHHHHh--c-CCeEEeecC-CC
Q 023072 83 VDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPSTTDVVCTTTAEALA--M-GKIVVCANH-PS 155 (287)
Q Consensus 83 l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps~~E~~~~~~~EAma--~-G~PVV~s~~-~~ 155 (287)
++|+.+.+. ...+.......+..+.........-..+.. .|++++| +.-|+.+++.+. . .+|||.-.. ..
T Consensus 3 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 79 (223)
T 2hqr_A 3 VLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPT 79 (223)
T ss_dssp EEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSCC
T ss_pred EEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCCC
Confidence 455554332 344555555555544322221111133333 4888733 334566666554 2 677776544 32
Q ss_pred ----ccccccCCCeEeec---CHHHHHHHHHHHHhCC
Q 023072 156 ----NDFFKQFPNCRTYD---DRNGFVEATLKALAEE 185 (287)
Q Consensus 156 ----~e~i~~~~~g~l~~---d~~~l~~~i~~ll~~~ 185 (287)
...+..+..+++.. +.+++..+|..++...
T Consensus 80 ~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 80 SEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp HHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 33445566777764 7899999999998764
No 266
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=23.45 E-value=1.4e+02 Score=20.33 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCc-CHHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCCcchHHHHHHHhcCCeEEeec
Q 023072 79 AGLEVDLYGNGE-DFNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCAN 152 (287)
Q Consensus 79 ~~~~l~i~G~g~-~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E~~~~~~~EAma~G~PVV~s~ 152 (287)
.+..|+|.|.-. .++++++++..+|.. +.+.+. ...|++|.- +..|.++-.|...|+|||.-+
T Consensus 9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg~--v~~sVs------kkt~~LV~g---~~~gsK~~kA~~lgI~Ii~E~ 72 (92)
T 1l7b_A 9 KGLTFVITGELSRPREEVKALLRRLGAK--VTDSVS------RKTSYLVVG---ENPGSKLEKARALGVPTLTEE 72 (92)
T ss_dssp TTCEEECSTTTTSCHHHHHHHHHHTTCE--EESCCS------SSCCCBEEC---SSSSTTHHHHHCSSSCCEEHH
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHcCCE--EeCccc------CCeeEEEeC---CCCChHHHHHHHcCCcEEeHH
Confidence 356788888743 578888888888754 555543 344555554 334688888888888887543
No 267
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=23.30 E-value=88 Score=24.51 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=39.1
Q ss_pred HHhhhCCEEEcCCCCCcchHH--HHHHHh------cCCeEEeecCCC--cccc---c---------cC-CCe-EeecCHH
Q 023072 117 LIFHDYKVFLNPSTTDVVCTT--TAEALA------MGKIVVCANHPS--NDFF---K---------QF-PNC-RTYDDRN 172 (287)
Q Consensus 117 ~~~~~adv~v~ps~~E~~~~~--~~EAma------~G~PVV~s~~~~--~e~i---~---------~~-~~g-~l~~d~~ 172 (287)
-+...+|.+|. ..-++|+- ++|++. .++||+.-+..+ ..++ . .. .+. .+++|++
T Consensus 93 ~~~~~sda~Iv--lPGG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~ 170 (191)
T 1t35_A 93 KMSELADGFIS--MPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPD 170 (191)
T ss_dssp HHHHHCSEEEE--CSCCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHH
T ss_pred HHHHHCCEEEE--eCCCccHHHHHHHHHHHHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHH
Confidence 56667898876 33456654 789996 789999998744 2111 1 10 011 3346888
Q ss_pred HHHHHHHH
Q 023072 173 GFVEATLK 180 (287)
Q Consensus 173 ~l~~~i~~ 180 (287)
++.+.+.+
T Consensus 171 e~~~~l~~ 178 (191)
T 1t35_A 171 ELIEQMQN 178 (191)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88877765
No 268
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=23.28 E-value=2.2e+02 Score=24.47 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=47.9
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC----------CCHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhc
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR----------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAM 144 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~----------~~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~ 144 (287)
+-++-|+|-|.--..+.+.+..+|.++.++... ...++++..||++++ |...++ +.-..++.|--
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~ 250 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP 250 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC
Confidence 457889998876677777778888877666322 122388999999875 333333 44567777777
Q ss_pred CCeEEeecCCC
Q 023072 145 GKIVVCANHPS 155 (287)
Q Consensus 145 G~PVV~s~~~~ 155 (287)
|.-+|-+..|+
T Consensus 251 gailIN~aRG~ 261 (340)
T 4dgs_A 251 EGIVVNVARGN 261 (340)
T ss_dssp TCEEEECSCC-
T ss_pred CCEEEECCCCc
Confidence 77777665544
No 269
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.28 E-value=2.9e+02 Score=22.06 Aligned_cols=48 Identities=17% Similarity=0.016 Sum_probs=30.3
Q ss_pred HHHHHHhcCCeEEeecCCCccccccCCCeEeecCHHHHHHHHHHHHhCCCC
Q 023072 137 TTAEALAMGKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLKALAEEPA 187 (287)
Q Consensus 137 ~~~EAma~G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~~~ 187 (287)
.+-++...|+|||..+...... .......++.+....+...+++....
T Consensus 91 ~~~~~~~~~iPvV~~~~~~~~~---~~~~V~~d~~~~~~~a~~~L~~~G~~ 138 (298)
T 3tb6_A 91 YYLNLEKNGIPFAMINASYAEL---AAPSFTLDDVKGGMMAAEHLLSLGHT 138 (298)
T ss_dssp HHHHHHHTTCCEEEESSCCTTC---SSCEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCEEEEecCcCCC---CCCEEEeCcHHHHHHHHHHHHHCCCC
Confidence 4456667899999998643221 11334456777777777777776544
No 270
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=23.19 E-value=1.9e+02 Score=19.91 Aligned_cols=106 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh-CCEEEcCCC-CCcchHHHHHHHh--c-----CC-eE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD-YKVFLNPST-TDVVCTTTAEALA--M-----GK-IV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~-adv~v~ps~-~E~~~~~~~EAma--~-----G~-PV 148 (287)
..+++|+.+.+. ...+.......+..+............+.. .|++++=.. .+.-|..+++.+. . .. |+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 457777766443 345666666666543322211111133322 277665322 2334566666653 1 23 45
Q ss_pred E-eecCCC----ccccccCCCeEeec--CHHHHHHHHHHHHhCC
Q 023072 149 V-CANHPS----NDFFKQFPNCRTYD--DRNGFVEATLKALAEE 185 (287)
Q Consensus 149 V-~s~~~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~~ 185 (287)
| .|.... .+.+..+..+++.. +.+++.+++..++...
T Consensus 87 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp EEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 4 555544 23445566777775 9999999999988653
No 271
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=22.79 E-value=1.8e+02 Score=19.56 Aligned_cols=104 Identities=10% Similarity=-0.093 Sum_probs=55.7
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh--hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeecC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH--DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANH 153 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~--~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~~ 153 (287)
.++.|+.+.+. ...+.......+..+.........-..+. ..|+++.=.. .+.-|..+++.+. ..+|+|....
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 35667766443 34455555555544322221111113332 3577765322 2334666666654 4677765433
Q ss_pred -CC----ccccccCCCeEeec--CHHHHHHHHHHHHhC
Q 023072 154 -PS----NDFFKQFPNCRTYD--DRNGFVEATLKALAE 184 (287)
Q Consensus 154 -~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~~ 184 (287)
.. .+.+..+..+++.. +.+++..++..++..
T Consensus 84 ~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 84 YGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred cCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 33 23344555677765 999999999887653
No 272
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=22.77 E-value=26 Score=18.31 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=9.6
Q ss_pred CCcchHHHHHHHhcC
Q 023072 131 TDVVCTTTAEALAMG 145 (287)
Q Consensus 131 ~E~~~~~~~EAma~G 145 (287)
.|.+.-.+.||||-|
T Consensus 19 aeayakriaeamakg 33 (33)
T 2i9n_A 19 AEAYAKRIAEAMAKG 33 (33)
T ss_dssp THHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 344566677888755
No 273
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=22.39 E-value=2e+02 Score=24.27 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=43.8
Q ss_pred cCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHhh-----hCCEEEcCCCCCcchHHHHHHHhc--CCeEEe
Q 023072 78 LAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIFH-----DYKVFLNPSTTDVVCTTTAEALAM--GKIVVC 150 (287)
Q Consensus 78 ~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~~-----~adv~v~ps~~E~~~~~~~EAma~--G~PVV~ 150 (287)
.++++++.+-+.......++.+++++.. .. .+..++++. ..|+.+..+-.+.-.-...+|+.. |+.||+
T Consensus 27 ~~~~elvav~d~~~~~~~~~~a~~~g~~--~~--~~~~e~ll~~~~~~~iDvV~~atp~~~h~~~a~~al~a~~Gk~Vi~ 102 (312)
T 1nvm_B 27 AKYLEMGAMVGIDAASDGLARAQRMGVT--TT--YAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLID 102 (312)
T ss_dssp CSSEEEEEEECSCTTCHHHHHHHHTTCC--EE--SSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CcCeEEEEEEeCChhhhHHHHHHHcCCC--cc--cCCHHHHHhccCCCCCcEEEECCChHHHHHHHHHHHHhCCCCEEEE
Confidence 5788888776644322234556666643 11 123335554 468887766555444556788899 999999
Q ss_pred ecC
Q 023072 151 ANH 153 (287)
Q Consensus 151 s~~ 153 (287)
-+.
T Consensus 103 ekp 105 (312)
T 1nvm_B 103 LTP 105 (312)
T ss_dssp CST
T ss_pred cCc
Confidence 654
No 274
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=22.21 E-value=3e+02 Score=21.88 Aligned_cols=104 Identities=4% Similarity=-0.054 Sum_probs=61.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhh--CCEEEcCC-CCCcchHHHHHHH---hcCCeEEeec
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHD--YKVFLNPS-TTDVVCTTTAEAL---AMGKIVVCAN 152 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~--adv~v~ps-~~E~~~~~~~EAm---a~G~PVV~s~ 152 (287)
..+++|+.+.+. ...+.....+.|..+.........-+.+.. .|++++=. ..+.-|+.+++.+ ...+|||.-.
T Consensus 129 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt 208 (254)
T 2ayx_A 129 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVT 208 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEE
Confidence 467888877543 455677777777654443332222244443 47766422 2233455665555 3477887653
Q ss_pred C-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 153 H-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 153 ~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
. .. ...+..+.++++.. +.++|.+.+..++.
T Consensus 209 ~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 209 ANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp SSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHH
Confidence 3 32 33445566677775 99999999988875
No 275
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=22.11 E-value=2.4e+02 Score=22.10 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=39.7
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCC---cchHHHHHHHhcCCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD---VVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E---~~~~~~~EAma~G~PVV~s~~ 153 (287)
++.+.+-|-.+. ...+.+++..+|.. +...+ -..+.-+|.....+ .-..+.+.|++.|+|||..+.
T Consensus 7 ~~~i~~sg~~~~~~~~l~~~~~~~G~~--~~~~~------~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~W 76 (229)
T 1l0b_A 7 DISMVVSGLTPKEVMIVQKFAEKYRLA--LTDVI------TEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSW 76 (229)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHTTCE--ECSSC------CSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCE--EeCCc------CCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHH
Confidence 455555554332 44678888887743 33222 13344455554322 245789999999999998754
No 276
>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}
Probab=21.99 E-value=3.2e+02 Score=22.36 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=56.0
Q ss_pred EEEEEecccccCHHHHHHHHHHHHHhcCC--eEEEEEeCCcCHHHHHHHHHhcCCceEEe---------cCCCCH-H-HH
Q 023072 52 AYYIGKMVWSKGYKELLELLDDHQKELAG--LEVDLYGNGEDFNQIQEAAEKLKIVVRVY---------PGRDHA-D-LI 118 (287)
Q Consensus 52 i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~--~~l~i~G~g~~~~~l~~~~~~~~l~~~v~---------g~~~~~-~-~~ 118 (287)
.+.+|++.-++......+.+..+....++ +.++|+-.-.....+.+..+..+ +.+- |.+.-+ . ..
T Consensus 4 ~~i~gNwKmn~~~~~~~~~~~~l~~~~~~~~vev~v~Pp~~~L~~v~~~~~~~~--i~vgAQn~~~~~~GA~TGEiS~~m 81 (250)
T 1yya_A 4 VLVAGNWKMHKTPSEARVWFAELKRLLPPLQSEAAVLPAFPILPVAKEVLAETQ--VGYGAQDVSAHKEGAYTGEVSARM 81 (250)
T ss_dssp CEEEEECCBCCCHHHHHHHHHHHHHHCCCCSSEEEEECCGGGHHHHHHHHTTSS--CEEEESCCCSSSSBSCTTCCCHHH
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhccccCceEEEeCCHHHHHHHHHHhcCCC--CeEEeccCCCCCCCCccCcCCHHH
Confidence 46678887777777777777776553333 77777666555555555543222 2221 111111 1 55
Q ss_pred hhhCCE---EEcCC-----CCC---cchHHHHHHHhcCC-eEEeec
Q 023072 119 FHDYKV---FLNPS-----TTD---VVCTTTAEALAMGK-IVVCAN 152 (287)
Q Consensus 119 ~~~adv---~v~ps-----~~E---~~~~~~~EAma~G~-PVV~s~ 152 (287)
++.+.+ +|--| +.| ....++.-|+..|+ ||+|..
T Consensus 82 L~d~G~~~ViiGHSERR~~f~Etd~~v~~Kv~~Al~~GL~pI~CvG 127 (250)
T 1yya_A 82 LSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVG 127 (250)
T ss_dssp HHHTTCSEEEESCHHHHHHSCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHcCCCEEEeCchhhhcccCCCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 665533 33222 123 35678899999999 666654
No 277
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=21.94 E-value=2.3e+02 Score=20.42 Aligned_cols=103 Identities=6% Similarity=-0.032 Sum_probs=62.4
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHH--HHhhh--CCEEEcCC-CCCcchHHHHHHHh-----cCCeE
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHAD--LIFHD--YKVFLNPS-TTDVVCTTTAEALA-----MGKIV 148 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~--~~~~~--adv~v~ps-~~E~~~~~~~EAma-----~G~PV 148 (287)
+.++.|+=+.+. ...++....+.|...... ..+-.+ ++++. .|+.+.=- ..+--|+.+++.+- ..+||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~-a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipv 90 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQE-ADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPV 90 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEE-ESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEE-ECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeE
Confidence 567888865433 455666777777542211 111112 34433 47766532 23556888888774 46787
Q ss_pred EeecC-CC----ccccccCCCeEeec--CHHHHHHHHHHHHh
Q 023072 149 VCANH-PS----NDFFKQFPNCRTYD--DRNGFVEATLKALA 183 (287)
Q Consensus 149 V~s~~-~~----~e~i~~~~~g~l~~--d~~~l~~~i~~ll~ 183 (287)
|.-.. +. .+.+..|.++++.. +++++.+.+.+++.
T Consensus 91 I~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 91 LMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 75544 33 23455667788886 99999999998864
No 278
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}
Probab=21.92 E-value=2.2e+02 Score=23.75 Aligned_cols=89 Identities=13% Similarity=0.178 Sum_probs=53.3
Q ss_pred CeEEEEEeCCcCHHHHHHHHHhcCCceEEecCC----------CCHHHHhhhCCEEEc--CCCCCc---chHHHHHHHhc
Q 023072 80 GLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGR----------DHADLIFHDYKVFLN--PSTTDV---VCTTTAEALAM 144 (287)
Q Consensus 80 ~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~----------~~~~~~~~~adv~v~--ps~~E~---~~~~~~EAma~ 144 (287)
+-++-|+|-|.--..+-+.+..+|.++.++... ...++++..||++++ |...++ +.-..++.|--
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~ 201 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARK 201 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCT
T ss_pred cchheeeccCchhHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhc
Confidence 457899999877677777788888877776322 123378999999875 433344 33345555544
Q ss_pred CCeEEeecCCCccccccCCCeEeecCHHHHHHHHHH
Q 023072 145 GKIVVCANHPSNDFFKQFPNCRTYDDRNGFVEATLK 180 (287)
Q Consensus 145 G~PVV~s~~~~~e~i~~~~~g~l~~d~~~l~~~i~~ 180 (287)
|.-+|-+..++ ++ |.+++.+++..
T Consensus 202 gailIN~aRG~-----------~v-d~~aL~~aL~~ 225 (290)
T 3gvx_A 202 NLTIVNVARAD-----------VV-SKPDMIGFLKE 225 (290)
T ss_dssp TCEEEECSCGG-----------GB-CHHHHHHHHHH
T ss_pred CceEEEeehhc-----------cc-CCcchhhhhhh
Confidence 44444332221 11 56677766643
No 279
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=21.84 E-value=4.3e+02 Score=23.57 Aligned_cols=131 Identities=11% Similarity=0.131 Sum_probs=78.8
Q ss_pred cEEEEEecccccCHHHHHHHHHHHHHhcCCeEEEEEeCCcC--------------------HHHHHHHHHhcCCceEEec
Q 023072 51 GAYYIGKMVWSKGYKELLELLDDHQKELAGLEVDLYGNGED--------------------FNQIQEAAEKLKIVVRVYP 110 (287)
Q Consensus 51 ~i~~vG~~~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~--------------------~~~l~~~~~~~~l~~~v~g 110 (287)
.++|+|. .+++..+.+.+.... .+--++.|+|.|.- .+..+.++.+++....++|
T Consensus 211 ~v~~i~~---~~~i~~~~~~~g~~~--~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~G 285 (461)
T 4g65_A 211 EVFFVAA---SNHIRSVMSELQRLE--KPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEELENTIVFCG 285 (461)
T ss_dssp EEEEEEE---TTTHHHHHHHTTGGG--SCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHCTTSEEEES
T ss_pred EEEEEec---cchHHHHHHhhcccc--ccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHCCCceEEec
Confidence 4677774 457777777765432 23446788887642 3345566777764444467
Q ss_pred CCCCHH----HHhhhCCEEEcCCCC-CcchHHHHHHHhcCCeEEeecCCC---ccccccCCCeEeecCHHHHHHHHHHHH
Q 023072 111 GRDHAD----LIFHDYKVFLNPSTT-DVVCTTTAEALAMGKIVVCANHPS---NDFFKQFPNCRTYDDRNGFVEATLKAL 182 (287)
Q Consensus 111 ~~~~~~----~~~~~adv~v~ps~~-E~~~~~~~EAma~G~PVV~s~~~~---~e~i~~~~~g~l~~d~~~l~~~i~~ll 182 (287)
.-.+.+ +=+..+|+||..+.. |.-=++.+-|-.+|++=+.+.... .+.+....-..++.-....+..|.+.+
T Consensus 286 D~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i 365 (461)
T 4g65_A 286 DAADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHV 365 (461)
T ss_dssp CTTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHH
T ss_pred cccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCHHHHHHHHHHHHh
Confidence 766665 445677999987766 555566677788999887777744 334433211133322333566677766
Q ss_pred hCCC
Q 023072 183 AEEP 186 (287)
Q Consensus 183 ~~~~ 186 (287)
..+.
T Consensus 366 ~~~~ 369 (461)
T 4g65_A 366 RRAD 369 (461)
T ss_dssp HHTT
T ss_pred hccc
Confidence 6544
No 280
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=21.62 E-value=2.9e+02 Score=24.46 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=54.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCeEEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHHHHh--hhCCEEEcCCCCCcchHHH
Q 023072 61 SKGYKELLELLDDHQKELAGLEVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHADLIF--HDYKVFLNPSTTDVVCTTT 138 (287)
Q Consensus 61 ~Kg~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~~~~--~~adv~v~ps~~E~~~~~~ 138 (287)
.+|++.|.+-..++ .| +++.+.+......+++.....+...+++.+.+-..++. ..+|+.++.-.--.-=...
T Consensus 44 g~nv~~L~~q~~~f---~p--~~v~v~d~~~~~~L~~~l~~~~~~~~v~~G~~~l~~~a~~~~~D~Vv~AIvG~aGL~PT 118 (406)
T 1q0q_A 44 GKNVTRMVEQCLEF---SP--RYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPT 118 (406)
T ss_dssp SSCHHHHHHHHHHH---CC--SEEEESSHHHHHHHHHHHHHTTCCCEEEESHHHHHHHHTCTTCCEEEECCSSGGGHHHH
T ss_pred CCCHHHHHHHHHHh---CC--CEEEEcCHHHHHHHHHHhhcCCCCcEEEeCHHHHHHHhcCCCCCEEEEccccHhHHHHH
Confidence 68999999888777 34 35666664444555554421244456654433222333 3578888764443333457
Q ss_pred HHHHhcCCeEEeecC
Q 023072 139 AEALAMGKIVVCANH 153 (287)
Q Consensus 139 ~EAma~G~PVV~s~~ 153 (287)
++|+-+|+-+.-.|-
T Consensus 119 laAi~aGK~iaLANK 133 (406)
T 1q0q_A 119 LAAIRAGKTILLANK 133 (406)
T ss_dssp HHHHHTTCEEEECCH
T ss_pred HHHHHCCCeEEEech
Confidence 899999999888874
No 281
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=21.50 E-value=3.2e+02 Score=23.44 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred EEEEEeCCcCHHHHHHHHHhcCCceEEecCCCCHH-----------HHhhhCCEEEc-----CCCCCcchHHHHHHHhcC
Q 023072 82 EVDLYGNGEDFNQIQEAAEKLKIVVRVYPGRDHAD-----------LIFHDYKVFLN-----PSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 82 ~l~i~G~g~~~~~l~~~~~~~~l~~~v~g~~~~~~-----------~~~~~adv~v~-----ps~~E~~~~~~~EAma~G 145 (287)
++-|+|-|.--..+.+.++.+|.++.++....... +++..||++++ +....-+.-..+..|--|
T Consensus 150 tvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~g 229 (343)
T 2yq5_A 150 TVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKS 229 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTT
T ss_pred eEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCC
Q ss_pred CeEEeecCCC
Q 023072 146 KIVVCANHPS 155 (287)
Q Consensus 146 ~PVV~s~~~~ 155 (287)
.-+|-+..|+
T Consensus 230 ailIN~aRg~ 239 (343)
T 2yq5_A 230 AYLINCARGE 239 (343)
T ss_dssp CEEEECSCGG
T ss_pred cEEEECCCCh
No 282
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=21.04 E-value=2.8e+02 Score=21.12 Aligned_cols=106 Identities=6% Similarity=0.012 Sum_probs=59.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCC-ceEEecCCCCHHHHhh---------------hCCEEEcCCC-CCcchHHHHHH
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKI-VVRVYPGRDHADLIFH---------------DYKVFLNPST-TDVVCTTTAEA 141 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l-~~~v~g~~~~~~~~~~---------------~adv~v~ps~-~E~~~~~~~EA 141 (287)
..+++|+-+.+. ...+.....+.+. .+.........-+++. ..|++|+=.. .+.-|+.+++.
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~ 140 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATRE 140 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 457777766443 4556666777765 3333322221213443 3577765333 34567777776
Q ss_pred Hh-------cCCeEEeecC-C-C----ccccccCCCeEeecCHHHHHHHHHHHHhCC
Q 023072 142 LA-------MGKIVVCANH-P-S----NDFFKQFPNCRTYDDRNGFVEATLKALAEE 185 (287)
Q Consensus 142 ma-------~G~PVV~s~~-~-~----~e~i~~~~~g~l~~d~~~l~~~i~~ll~~~ 185 (287)
+. ..+|||.... . . .+.+..+..+++....++|.++|..++...
T Consensus 141 lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 141 IRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESKR 197 (206)
T ss_dssp HHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC---
T ss_pred HHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhhh
Confidence 64 4577776543 3 2 234455667788763338999999887653
No 283
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=20.99 E-value=2.5e+02 Score=22.66 Aligned_cols=72 Identities=14% Similarity=0.034 Sum_probs=42.4
Q ss_pred CCeEEEEEeC--C--cCHHHHHHHHHhcCCceEEecC-----CCCHH-------------HHhhhCC-EEEcCCCCCcch
Q 023072 79 AGLEVDLYGN--G--EDFNQIQEAAEKLKIVVRVYPG-----RDHAD-------------LIFHDYK-VFLNPSTTDVVC 135 (287)
Q Consensus 79 ~~~~l~i~G~--g--~~~~~l~~~~~~~~l~~~v~g~-----~~~~~-------------~~~~~ad-v~v~ps~~E~~~ 135 (287)
.++.|.|.|. . ....+++++++..|.. +... ++... .-....+ .++.... ..-.
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~--v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~-~~rt 80 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGGL--VLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDT-FSRK 80 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTCE--ECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSS-CCCC
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCCE--EecCcchhhccCccccccccccccccccccccccceEEEcCC-CCCc
Confidence 3567777766 2 3478899999998853 4321 10000 0011112 3333322 2346
Q ss_pred HHHHHHHhcCCeEEeecC
Q 023072 136 TTTAEALAMGKIVVCANH 153 (287)
Q Consensus 136 ~~~~EAma~G~PVV~s~~ 153 (287)
.+.+.|++.|.|||..+.
T Consensus 81 ~K~~~ala~gipiV~~~W 98 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQF 98 (241)
T ss_dssp HHHHHHHHHTCCEECTHH
T ss_pred HHHHHHHHcCCCEecHHH
Confidence 788999999999999865
No 284
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=20.88 E-value=3.6e+02 Score=23.70 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=40.7
Q ss_pred hcCCeEEEEEeCCcCHHHHHHHHHhcCC-ceEEecCC-----CC------------------------HHHHhhhCCEEE
Q 023072 77 ELAGLEVDLYGNGEDFNQIQEAAEKLKI-VVRVYPGR-----DH------------------------ADLIFHDYKVFL 126 (287)
Q Consensus 77 ~~~~~~l~i~G~g~~~~~l~~~~~~~~l-~~~v~g~~-----~~------------------------~~~~~~~adv~v 126 (287)
...+.+++|+|.|.--..+-+++...|. ++.+.... +. .++.+..+|++|
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE
Confidence 3468899999998765556666666676 44444211 11 126677788888
Q ss_pred cCCCCCcchHHHHHHHh
Q 023072 127 NPSTTDVVCTTTAEALA 143 (287)
Q Consensus 127 ~ps~~E~~~~~~~EAma 143 (287)
-.|..-.+.--+++.|+
T Consensus 269 G~Sap~l~t~emVk~Ma 285 (388)
T 1vl6_A 269 GVSRGNILKPEWIKKMS 285 (388)
T ss_dssp ECSCSSCSCHHHHTTSC
T ss_pred EeCCCCccCHHHHHhcC
Confidence 77654335555666665
No 285
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=20.64 E-value=2.8e+02 Score=20.99 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=50.9
Q ss_pred HHHHHHhcCCceEEecCCCCHH--HHhhh----C-CEEEcCCCCCcchHHHHHHHh-cC-CeEEeecCCC---ccc----
Q 023072 95 IQEAAEKLKIVVRVYPGRDHAD--LIFHD----Y-KVFLNPSTTDVVCTTTAEALA-MG-KIVVCANHPS---NDF---- 158 (287)
Q Consensus 95 l~~~~~~~~l~~~v~g~~~~~~--~~~~~----a-dv~v~ps~~E~~~~~~~EAma-~G-~PVV~s~~~~---~e~---- 158 (287)
+++.+.+++..+.++..-...+ +.++. + .+.++|.-+-..+..+.+|++ .+ +|+|=-.... +|.
T Consensus 40 l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~~~~dgiIINpgA~THtSvAlrDAl~~v~~~P~VEVHiSNi~aRE~FRh~ 119 (156)
T 1gtz_A 40 CVKAAAAHGGTVDFRQSNHEGELVDWIHEARLNHCGIVINPAAYSHTSVAILDALNTCDGLPVVEVHISNIHQREPFRHH 119 (156)
T ss_dssp HHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHCSEEEEECTTHHHHCHHHHHHHHTSTTCCEEEEESSCGGGSCGGGSC
T ss_pred HHHHHHHcCCEEEEEeeCCHHHHHHHHHHhhhcCcEEEECchhhccccHHHHHHHHhcCCCCEEEEEecCcccccccccc
Confidence 4445555666555542222222 33332 3 467888887778999999985 46 7998765543 554
Q ss_pred --cccCCCeEeec-CHHHHHHHHHHHH
Q 023072 159 --FKQFPNCRTYD-DRNGFVEATLKAL 182 (287)
Q Consensus 159 --i~~~~~g~l~~-d~~~l~~~i~~ll 182 (287)
+.+...|.++. -.+...-++..++
T Consensus 120 S~~s~~a~GvI~G~G~~gY~lAl~a~~ 146 (156)
T 1gtz_A 120 SYVSQRADGVVAGCGVQGYVFGVERIA 146 (156)
T ss_dssp CSGGGTCSEEEESSTTHHHHHHHHHHH
T ss_pred cccCcceeEEEEecCHHHHHHHHHHHH
Confidence 44444666665 5555555554443
No 286
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.57 E-value=1.5e+02 Score=26.50 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=60.4
Q ss_pred cEEEEEe--c--ccccCHHHHHHHHHHHHHh---cCCeEEEEEeCCc---CHHHHHHHHHhcCCceEEec----------
Q 023072 51 GAYYIGK--M--VWSKGYKELLELLDDHQKE---LAGLEVDLYGNGE---DFNQIQEAAEKLKIVVRVYP---------- 110 (287)
Q Consensus 51 ~i~~vG~--~--~~~Kg~~~ll~a~~~l~~~---~~~~~l~i~G~g~---~~~~l~~~~~~~~l~~~v~g---------- 110 (287)
.|+++.. + ....|++..++++-+.... ...-.+-|+|.-. |..+++++.+++|+.+.+++
T Consensus 133 pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~VNilg~~~~~~d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~ 212 (458)
T 1mio_B 133 LVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDIPYIMFPDTSGVLDGPT 212 (458)
T ss_dssp EEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSCCCSCEEEECCSCCHHHHHHHHHHHHHHTCCEEESSCCTTTSSCCC
T ss_pred eEEEEECCCCcccHHHHHHHHHHHHHHHHccccCCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEeccccccccCcc
Confidence 4666553 2 2346788888776543211 1123466677532 35789999999999887642
Q ss_pred ----------CCCCHH-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeecCC
Q 023072 111 ----------GRDHAD-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCANHP 154 (287)
Q Consensus 111 ----------~~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~~~ 154 (287)
+..-.+ .-+..|.+-|. .....+..+.++|. +|+|.+..+.+
T Consensus 213 ~~~~~~~~~gg~~~~ei~~~~~A~~niv--~~~~~~~~~A~~Le~~~GiP~~~~~~p 267 (458)
T 1mio_B 213 TGEYKMYPEGGTKIEDLKDTGNSDLTLS--LGSYASDLGAKTLEKKCKVPFKTLRTP 267 (458)
T ss_dssp CSSCCSSCSCSBCHHHHHTTSSCSEEEE--ESHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred cCccceeCCCCCcHHHHHhhccCCEEEE--EchhhHHHHHHHHHHHhCCCEEecCCC
Confidence 222223 33444555443 23334578888886 79999987643
No 287
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=20.41 E-value=4.2e+02 Score=23.03 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=40.7
Q ss_pred cCCe--EEEEEeCCcCHHHHHHHHHhcCC----ceEEe-cCCCCHH---HHhhh--CCEEEcCCCCCcchHHHHHHHhcC
Q 023072 78 LAGL--EVDLYGNGEDFNQIQEAAEKLKI----VVRVY-PGRDHAD---LIFHD--YKVFLNPSTTDVVCTTTAEALAMG 145 (287)
Q Consensus 78 ~~~~--~l~i~G~g~~~~~l~~~~~~~~l----~~~v~-g~~~~~~---~~~~~--adv~v~ps~~E~~~~~~~EAma~G 145 (287)
.+++ .+.+++. +.+..++++++++. .+.+. ....+.+ ++++. .|++|+.+-...-...+-.++..|
T Consensus 23 ~g~~~~~V~v~~r--~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~~~~~v~~a~l~~g 100 (405)
T 4ina_A 23 NREVFSHITLASR--TLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPYQDLTIMEACLRTG 100 (405)
T ss_dssp CTTTCCEEEEEES--CHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGGGHHHHHHHHHHHT
T ss_pred CCCCceEEEEEEC--CHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcccChHHHHHHHHhC
Confidence 3554 6777765 33555555554431 23332 3444333 77777 899998654322223345677899
Q ss_pred CeEEe
Q 023072 146 KIVVC 150 (287)
Q Consensus 146 ~PVV~ 150 (287)
+.+|-
T Consensus 101 ~~vvD 105 (405)
T 4ina_A 101 VPYLD 105 (405)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 99994
No 288
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=20.36 E-value=2.1e+02 Score=19.41 Aligned_cols=106 Identities=7% Similarity=-0.093 Sum_probs=55.5
Q ss_pred eEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhh-hCCEEEcCCC-CCcchHHHHHHHh---cCCeEEeecCC
Q 023072 81 LEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFH-DYKVFLNPST-TDVVCTTTAEALA---MGKIVVCANHP 154 (287)
Q Consensus 81 ~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~-~adv~v~ps~-~E~~~~~~~EAma---~G~PVV~s~~~ 154 (287)
.+++|+.+.+. ...+.......+..+...........++. ..|+++.-.. .+.-|+.+++.+. ..+|||.....
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGY 83 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEec
Confidence 46777766433 34455555554333333322111111111 1577665333 3555677776654 35677765443
Q ss_pred Cc------c----ccccCCCeEeec--CHHHHHHHHHHHHhCCC
Q 023072 155 SN------D----FFKQFPNCRTYD--DRNGFVEATLKALAEEP 186 (287)
Q Consensus 155 ~~------e----~i~~~~~g~l~~--d~~~l~~~i~~ll~~~~ 186 (287)
.. + .+..+..+++.. +.+++.+++.++.....
T Consensus 84 ~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 84 DSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred cchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 32 2 223333456665 99999999999887543
No 289
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=20.36 E-value=2.3e+02 Score=25.71 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=64.0
Q ss_pred cEEEEEe--c---ccccCHHHHHHHHHH-HHHh--------cCCeEEEEEeC---CcCHHHHHHHHHhcCCceEE-e-cC
Q 023072 51 GAYYIGK--M---VWSKGYKELLELLDD-HQKE--------LAGLEVDLYGN---GEDFNQIQEAAEKLKIVVRV-Y-PG 111 (287)
Q Consensus 51 ~i~~vG~--~---~~~Kg~~~ll~a~~~-l~~~--------~~~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v-~-g~ 111 (287)
.|+++.. + ....|++..++++-+ +... ..+-.+.|+|. ..|..+++++.+++|+.+.. + |+
T Consensus 177 pVi~v~tpgf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNIiG~~~~~gD~~eik~lL~~~Gi~v~~~~~g~ 256 (492)
T 3u7q_A 177 TIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWSGD 256 (492)
T ss_dssp CEEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCCCCCTTEEEEEEECCBTTTTHHHHHHHHHTTCEEEEEEETT
T ss_pred cEEEecCCCCCCCchhHHHHHHHHHHHHHHhhhcccccccCCCCCcEEEECCCCChhhHHHHHHHHHHCCCeEEEEeCCC
Confidence 3666653 2 234578888887765 4322 11346777774 23568899999999998775 4 44
Q ss_pred CCCHH-HHhhhCCEEEcCCCCCcchHHHHHHH--hcCCeEEeec
Q 023072 112 RDHAD-LIFHDYKVFLNPSTTDVVCTTTAEAL--AMGKIVVCAN 152 (287)
Q Consensus 112 ~~~~~-~~~~~adv~v~ps~~E~~~~~~~EAm--a~G~PVV~s~ 152 (287)
....+ .-+..|++-|..+. .++..+.+.| -+|+|.+...
T Consensus 257 ~t~~ei~~~~~A~~niv~~~--~~~~~~A~~Le~~~GiP~i~~~ 298 (492)
T 3u7q_A 257 GSISEIELTPKVKLNLVHCY--RSMNYISRHMEEKYGIPWMEYN 298 (492)
T ss_dssp CCHHHHHHGGGCSEEEESCH--HHHHHHHHHHHHHHCCCEEECC
T ss_pred CCHHHHHhhhcCcEEEEECh--HHHHHHHHHHHHHhCCceEecC
Confidence 44445 66667777665322 2456777777 4799999865
No 290
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=20.32 E-value=2.9e+02 Score=21.26 Aligned_cols=66 Identities=15% Similarity=0.059 Sum_probs=40.6
Q ss_pred CeEEEEEeCCcC-HHHHHHHHHhcCCceEEecCCCCHHHHhhhCCEEEcCCCCC---cchHHHHHHHhcCCeEEeecC
Q 023072 80 GLEVDLYGNGED-FNQIQEAAEKLKIVVRVYPGRDHADLIFHDYKVFLNPSTTD---VVCTTTAEALAMGKIVVCANH 153 (287)
Q Consensus 80 ~~~l~i~G~g~~-~~~l~~~~~~~~l~~~v~g~~~~~~~~~~~adv~v~ps~~E---~~~~~~~EAma~G~PVV~s~~ 153 (287)
++.+++-|-.+. .+.+.+++..+|.. +....+ ..+.-+|..+..+ .-..+.+.|++.|+|||..+.
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~--~~~~~~------~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~W 73 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHIT--LTNLIT------EETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFW 73 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCE--ECSSCC------TTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCE--EeCccC------CCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHH
Confidence 456666665433 45678888887743 332221 3344445544322 235788999999999998754
No 291
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.04 E-value=1.9e+02 Score=26.70 Aligned_cols=100 Identities=13% Similarity=0.026 Sum_probs=62.3
Q ss_pred cEEEEEec--c---cccCHHHHHHHHHHHH-Hhc---C-CeEEEEEeC---CcCHHHHHHHHHhcCCceEE-ec-CCCCH
Q 023072 51 GAYYIGKM--V---WSKGYKELLELLDDHQ-KEL---A-GLEVDLYGN---GEDFNQIQEAAEKLKIVVRV-YP-GRDHA 115 (287)
Q Consensus 51 ~i~~vG~~--~---~~Kg~~~ll~a~~~l~-~~~---~-~~~l~i~G~---g~~~~~l~~~~~~~~l~~~v-~g-~~~~~ 115 (287)
.|+++..- . ...|++..++++-+.. ... + .-.+.|+|. +.|..+++++.+++|+.+.. ++ +....
T Consensus 167 pVi~v~tpGf~g~s~~~G~~~a~~al~~~~~~~~~~~~~~~~VNIlG~~~~~gD~~eikrlL~~~Gi~v~~~~~gg~t~~ 246 (533)
T 1mio_A 167 PVHAFSCEGYKGVSQSAGHHIANNTVMTDIIGKGNKEQKKYSINVLGEYNIGGDAWEMDRVLEKIGYHVNATLTGDATYE 246 (533)
T ss_dssp CEEECCCCTTSSSSTHHHHHHHHHHHHHHTTBCCCCCCCTTEEEEEEECCBTSHHHHHHHHHHHHTCEEEEEEETTCCHH
T ss_pred cEEEEeCCCCcCcchhHHHHHHHHHHHHHhcccccCCCCCCeEEEEcCCCChhhHHHHHHHHHHCCCeEEEEeCCCCCHH
Confidence 46665532 2 2368888887766532 111 1 345777775 33468899999999997764 44 44444
Q ss_pred H-HHhhhCCEEEcCCCCCcchHHHHHHHh--cCCeEEeec
Q 023072 116 D-LIFHDYKVFLNPSTTDVVCTTTAEALA--MGKIVVCAN 152 (287)
Q Consensus 116 ~-~~~~~adv~v~ps~~E~~~~~~~EAma--~G~PVV~s~ 152 (287)
+ .-+..|++-|..+. ..+..+.++|- +|+|.+...
T Consensus 247 ei~~~~~A~~niv~~~--~~~~~~A~~Leer~GiP~i~~~ 284 (533)
T 1mio_A 247 KVQNADKADLNLVQCH--RSINYIAEMMETKYGIPWIKCN 284 (533)
T ss_dssp HHHBTTSCSEEEESCH--HHHHHHHHHHHHHHCCCEEECC
T ss_pred HHHhhhcCCEEEEECH--HHHHHHHHHHHHHhCCCeEEec
Confidence 4 44555666555432 24677788885 799999975
Done!