Query 023075
Match_columns 287
No_of_seqs 209 out of 956
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 100.0 3E-65 6.5E-70 468.7 22.8 256 22-287 9-298 (302)
2 COG5539 Predicted cysteine pro 100.0 8.6E-31 1.9E-35 240.6 8.4 251 21-285 7-305 (306)
3 PF02338 OTU: OTU-like cystein 99.8 1.5E-21 3.2E-26 158.5 5.5 102 177-281 1-121 (121)
4 KOG3288 OTU-like cysteine prot 99.5 4.2E-15 9.2E-20 135.2 4.6 103 171-285 110-231 (307)
5 PF10275 Peptidase_C65: Peptid 99.3 3.5E-12 7.7E-17 116.4 5.9 80 200-286 157-244 (244)
6 KOG2605 OTU (ovarian tumor)-li 99.1 2.4E-11 5.2E-16 117.4 2.4 118 159-286 206-343 (371)
7 KOG3991 Uncharacterized conser 99.1 1.7E-10 3.6E-15 104.0 5.5 78 200-287 174-256 (256)
8 COG5539 Predicted cysteine pro 97.7 6.6E-06 1.4E-10 76.8 -0.3 97 176-285 117-230 (306)
9 PF05415 Peptidase_C36: Beet n 91.4 0.36 7.8E-06 38.3 4.5 59 176-242 3-69 (104)
10 PF14282 FlxA: FlxA-like prote 84.0 13 0.00028 30.0 9.3 61 28-89 18-78 (106)
11 PF04645 DUF603: Protein of un 67.9 16 0.00034 32.4 5.9 45 31-82 107-151 (181)
12 PF05412 Peptidase_C33: Equine 65.9 7.3 0.00016 31.8 3.3 59 176-242 4-62 (108)
13 PRK09784 hypothetical protein; 59.6 5.2 0.00011 37.5 1.5 23 166-188 195-217 (417)
14 PF08232 Striatin: Striatin fa 58.2 29 0.00062 29.2 5.7 44 36-84 25-68 (134)
15 PF07851 TMPIT: TMPIT-like pro 47.8 40 0.00086 32.8 5.5 42 30-82 40-81 (330)
16 PF05529 Bap31: B-cell recepto 47.0 58 0.0013 28.5 6.1 54 36-90 125-181 (192)
17 PF12999 PRKCSH-like: Glucosid 43.5 55 0.0012 29.0 5.3 52 28-83 120-174 (176)
18 KOG2605 OTU (ovarian tumor)-li 43.3 12 0.00026 36.9 1.2 48 200-247 2-49 (371)
19 PF05381 Peptidase_C21: Tymovi 40.9 1.7E+02 0.0036 23.9 7.3 86 178-283 1-94 (104)
20 PF06785 UPF0242: Uncharacteri 39.7 80 0.0017 31.0 6.1 50 27-88 132-183 (401)
21 PF08581 Tup_N: Tup N-terminal 37.9 1.2E+02 0.0026 23.3 5.8 42 32-81 35-76 (79)
22 PF06657 Cep57_MT_bd: Centroso 37.5 1.9E+02 0.004 22.1 7.6 45 32-83 27-71 (79)
23 KOG4364 Chromatin assembly fac 36.7 2.4E+02 0.0051 30.3 9.3 18 72-89 295-312 (811)
24 PF04420 CHD5: CHD5-like prote 36.0 1.5E+02 0.0032 25.5 6.8 56 32-87 36-91 (161)
25 PF05104 Rib_recp_KP_reg: Ribo 34.6 20 0.00043 30.9 1.1 19 24-42 3-21 (151)
26 PF10224 DUF2205: Predicted co 34.1 72 0.0016 24.7 4.0 33 33-77 20-52 (80)
27 PRK11546 zraP zinc resistance 33.7 2E+02 0.0044 24.7 7.1 57 23-83 48-110 (143)
28 PF02388 FemAB: FemAB family; 33.6 1.4E+02 0.0031 29.4 7.1 51 28-80 241-291 (406)
29 KOG0930 Guanine nucleotide exc 33.2 1.5E+02 0.0032 28.7 6.7 42 31-84 19-64 (395)
30 PF05159 Capsule_synth: Capsul 33.0 87 0.0019 28.5 5.2 55 220-286 5-64 (269)
31 TIGR02338 gimC_beta prefoldin, 32.9 1.8E+02 0.0039 23.2 6.4 44 25-80 63-106 (110)
32 PF02403 Seryl_tRNA_N: Seryl-t 32.0 1.8E+02 0.0039 22.8 6.2 20 61-80 73-92 (108)
33 TIGR00513 accA acetyl-CoA carb 31.9 90 0.0019 30.2 5.2 42 34-83 8-49 (316)
34 PF07106 TBPIP: Tat binding pr 31.9 2E+02 0.0043 24.6 6.9 47 31-80 88-134 (169)
35 PRK05724 acetyl-CoA carboxylas 31.6 1E+02 0.0022 29.9 5.4 42 34-83 8-49 (319)
36 PF06858 NOG1: Nucleolar GTP-b 31.0 61 0.0013 23.7 3.0 36 157-193 2-37 (58)
37 PF10779 XhlA: Haemolysin XhlA 30.4 1.4E+02 0.003 22.0 5.0 46 28-78 5-50 (71)
38 cd00632 Prefoldin_beta Prefold 29.2 2.2E+02 0.0047 22.4 6.3 45 25-81 59-103 (105)
39 PF14335 DUF4391: Domain of un 29.1 75 0.0016 28.6 4.0 49 26-78 173-221 (221)
40 PF06810 Phage_GP20: Phage min 29.1 1.6E+02 0.0035 25.3 5.8 47 35-90 33-82 (155)
41 COG3426 Butyrate kinase [Energ 28.8 50 0.0011 31.9 2.8 77 157-233 234-341 (358)
42 PF09304 Cortex-I_coil: Cortex 28.5 2.9E+02 0.0063 22.6 6.8 47 26-81 31-77 (107)
43 PF02996 Prefoldin: Prefoldin 28.0 1.8E+02 0.004 22.9 5.8 48 24-83 72-119 (120)
44 PLN03230 acetyl-coenzyme A car 27.3 1.2E+02 0.0025 30.7 5.2 42 34-83 78-119 (431)
45 PRK11020 hypothetical protein; 27.2 1.8E+02 0.0039 24.2 5.4 22 29-50 31-52 (118)
46 COG0825 AccA Acetyl-CoA carbox 26.9 1.1E+02 0.0023 29.6 4.7 46 34-87 7-52 (317)
47 PF01920 Prefoldin_2: Prefoldi 26.8 2.6E+02 0.0057 21.3 6.3 43 26-80 59-101 (106)
48 CHL00198 accA acetyl-CoA carbo 26.5 1.2E+02 0.0026 29.4 5.0 43 34-84 11-53 (322)
49 PF04912 Dynamitin: Dynamitin 26.5 1.6E+02 0.0035 28.7 6.1 63 22-86 87-149 (388)
50 smart00718 DM4_12 DM4/DM12 fam 25.9 57 0.0012 25.7 2.3 31 155-192 6-37 (95)
51 KOG3612 PHD Zn-finger protein 25.5 1.9E+02 0.0042 30.1 6.4 50 28-88 470-523 (588)
52 KOG0642 Cell-cycle nuclear pro 24.9 83 0.0018 32.7 3.7 52 28-84 33-84 (577)
53 PF13801 Metal_resist: Heavy-m 24.8 3.1E+02 0.0068 20.8 7.7 65 21-89 44-114 (125)
54 PF12982 DUF3866: Protein of u 24.8 1.3E+02 0.0027 29.3 4.8 64 170-244 114-184 (320)
55 COG2825 HlpA Outer membrane pr 24.3 4.5E+02 0.0097 22.9 7.8 31 24-54 46-76 (170)
56 PF15619 Lebercilin: Ciliary p 24.2 2.9E+02 0.0062 24.7 6.7 50 25-79 57-106 (194)
57 KOG4809 Rab6 GTPase-interactin 22.6 1.9E+02 0.0042 30.2 5.8 23 67-89 392-414 (654)
58 COG5414 TATA-binding protein-a 22.2 2.7E+02 0.0058 27.0 6.3 46 35-83 340-385 (392)
59 KOG4807 F-actin binding protei 21.8 1.7E+02 0.0038 29.4 5.1 16 27-42 354-369 (593)
60 PF01381 HTH_3: Helix-turn-hel 21.0 1.2E+02 0.0027 20.2 3.0 30 209-238 23-52 (55)
61 KOG1265 Phospholipase C [Lipid 20.8 3.9E+02 0.0084 29.9 7.8 27 28-54 1081-1107(1189)
62 COG2433 Uncharacterized conser 20.8 3.4E+02 0.0073 28.8 7.2 46 27-84 427-472 (652)
63 COG5481 Uncharacterized conser 20.2 3.7E+02 0.008 19.9 6.0 49 28-78 10-61 (67)
64 cd00890 Prefoldin Prefoldin is 20.1 3.4E+02 0.0074 21.5 5.9 46 25-82 83-128 (129)
65 PF03255 ACCA: Acetyl co-enzym 20.0 15 0.00033 31.5 -2.2 38 35-80 6-43 (145)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-65 Score=468.65 Aligned_cols=256 Identities=43% Similarity=0.729 Sum_probs=214.9
Q ss_pred cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CC-CC
Q 023075 22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSN-GN-EK 99 (287)
Q Consensus 22 ~~~~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~-~~-~~ 99 (287)
...+++++|++|||+|+|+||++||+|||+++||+| ++||+++.+|++||.+|.+||.+||..+...... .. .+
T Consensus 9 ~~~~~~e~iLaRHr~E~keLq~ki~~mKk~a~k~~k----~~rK~~~~~~~~le~el~qkH~kEL~~~~~~~~~e~~~~e 84 (302)
T KOG2606|consen 9 QDEESNEEILARHRRERKELQAKITSMKKAAPKGNK----KKRKELTEDIAKLEKELSQKHKKELEKLKLINESEVTPKE 84 (302)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccH----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcccCccccCccc
Confidence 344556999999999999999999999999999996 8999999999999999999999999999753211 11 12
Q ss_pred CcchhhhhhhcccccccccCCCCCchhhhhHHHHHHHHHHHH-HHHHHHH--hcccCCchhHHHHHHHHhccCCceEEee
Q 023075 100 SNLDNLVKAVAGVTVISQHDQAKPSKGTKRREKRAQQEAARE-QRIQEEQ--SNIVSDRTVEDEKLEKKLGPLGLTVNDI 176 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~sKa~~Rr~kr~a~~~~r~-~~i~~e~--~~~~~~r~~E~~~l~~~L~~~gL~i~~I 176 (287)
...++++..++.+.....++.|+.||++|||.+++..++.++ ++|.+++ .+.++.+.+|.+.|.+.|...||.+++|
T Consensus 85 ~~~~s~l~~~a~~~~~~~ee~P~~sKa~k~r~k~r~e~r~~e~~~~~e~~~~~~~~~~k~~E~~k~~~il~~~~l~~~~I 164 (302)
T KOG2606|consen 85 NLIESVLSPIANMSLENKEETPRQSKARKRREKKRKEERKREAEKIAEEESLSNQADAKSMEKEKLAQILEERGLKMFDI 164 (302)
T ss_pred cchhhhhcccccccccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHhccCccccC
Confidence 224455555566666655555667888888877766666665 7787643 4889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCCC-C------------------Ccchhh----------hHhHHHHHHHhhcCCccCcHHHH
Q 023075 177 KPDGHCLYRAVEDQLAHLSGG-E------------------ESAQSQ----------VERFENYCKEVESTAAWGGELEL 227 (287)
Q Consensus 177 ~~DGnCLFrAIa~QL~~~~~~-~------------------~fd~~~----------~~~f~eY~~~m~~~~~WGG~lEL 227 (287)
|+||||||+||+|||..++.. . +|-+|+ .++|+.||+.|++|+.|||+|||
T Consensus 165 p~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL 244 (302)
T KOG2606|consen 165 PADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELEL 244 (302)
T ss_pred CCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHH
Confidence 999999999999999987654 1 144442 35799999999999999999999
Q ss_pred HHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075 228 RALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287 (287)
Q Consensus 228 ~ALS~~l~~~I~V~~~~~~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~ 287 (287)
.|||++|.+||.||+.++|++.||++|.. .+||.|+||+|+||||+|||||.|.
T Consensus 245 ~AlShvL~~PI~Vy~~~~p~~~~geey~k------d~pL~lvY~rH~y~LGeHYNS~~~~ 298 (302)
T KOG2606|consen 245 KALSHVLQVPIEVYQADGPILEYGEEYGK------DKPLILVYHRHAYGLGEHYNSVTPL 298 (302)
T ss_pred HHHHHhhccCeEEeecCCCceeechhhCC------CCCeeeehHHhHHHHHhhhcccccc
Confidence 99999999999999999999999999963 5899999999999999999999883
No 2
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-31 Score=240.56 Aligned_cols=251 Identities=19% Similarity=0.158 Sum_probs=194.3
Q ss_pred cccccc-HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 023075 21 QKKQET-RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLGYSSSNGNEK 99 (287)
Q Consensus 21 ~~~~~~-~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~~~~~~~~~~ 99 (287)
+..-+| |+.|+.+||.|.++||.+||.|+|+++.|.+ +.| |+..|..|+..|.++|+-|+..+.....+.++.
T Consensus 7 ~~~~~t~~e~lt~kq~~e~~dlq~kI~~~~kql~~g~~----~qr--l~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea 80 (306)
T COG5539 7 QAAAETAMESLTEKQRFELKDLQTKITRIMKQLTFGRP----PQR--LNGKCLDLSYALSQKDEVEIEKAPKLRAETNEA 80 (306)
T ss_pred ccccchHHHHHHhhhhcccHHHHHHHHHHHHHHHccCc----hhh--hccccchHHHHhhhhHHHHhhhhhhhcchhhcc
Confidence 334455 8999999999999999999999999998875 322 999999999999999999999886433222221
Q ss_pred Ccchhhhh--hhc------------cccccccc-CCCCCchhhhhHHHHHHHHHHHHHHHHHHHhcc----cCCchhHHH
Q 023075 100 SNLDNLVK--AVA------------GVTVISQH-DQAKPSKGTKRREKRAQQEAAREQRIQEEQSNI----VSDRTVEDE 160 (287)
Q Consensus 100 ~~~~~~~~--~~~------------~~~~~~~~-~~~~~sKa~~Rr~kr~a~~~~r~~~i~~e~~~~----~~~r~~E~~ 160 (287)
.+.+++++ ..+ +....... .+....+.++||+.|...+.+....+++.++++ ++-...++.
T Consensus 81 ~q~~~l~~~q~~~~~~iss~e~s~~qq~~nv~ed~p~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~ 160 (306)
T COG5539 81 DQEDSLTPLQNIPELGISSFEKSVSQQSINVLEDMPGQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAIL 160 (306)
T ss_pred CCCccCCCcccCCccccccCcccccccccchhccCCCCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhc
Confidence 12222111 111 11111111 233456999999999999998887777654444 555778888
Q ss_pred HHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCC-------------C-------------cchhh--hHhHHHHH
Q 023075 161 KLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE-------------E-------------SAQSQ--VERFENYC 212 (287)
Q Consensus 161 ~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~-------------~-------------fd~~~--~~~f~eY~ 212 (287)
.+...+..-+|.-.+++|||+|+|.+|++||..+.... . ||+.+ ...|++||
T Consensus 161 ~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~ 240 (306)
T COG5539 161 EIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYV 240 (306)
T ss_pred CcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHH
Confidence 88999999999999999999999999999998754311 0 55544 46899999
Q ss_pred HHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075 213 KEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285 (287)
Q Consensus 213 ~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~ 285 (287)
+.|..++.||+.+|++|||+.|++|+.++...+|.+.+++- +.+..+-+.|++|+|++| ||||+.
T Consensus 241 ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c-------~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 241 NEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC-------GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred hhhcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc-------ccccchhhHHHHHHHhhc-CccccC
Confidence 99999999999999999999999999999999999887642 235568899999999999 999974
No 3
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.84 E-value=1.5e-21 Score=158.45 Aligned_cols=102 Identities=35% Similarity=0.652 Sum_probs=74.0
Q ss_pred CCCCchHHHHHHHHHh----cCCCCCC--------cch-hhhHhHHHHHH--HhhcCCccCcHHHHHHHHHhhcccEEEE
Q 023075 177 KPDGHCLYRAVEDQLA----HLSGGEE--------SAQ-SQVERFENYCK--EVESTAAWGGELELRALTHCLRKHIMIY 241 (287)
Q Consensus 177 ~~DGnCLFrAIa~QL~----~~~~~~~--------fd~-~~~~~f~eY~~--~m~~~~~WGG~lEL~ALS~~l~~~I~V~ 241 (287)
|||||||||||++||+ +....+. +-. .-...|..|+. +|+++++|||++||.|||++|+++|.||
T Consensus 1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Wg~~~el~a~a~~~~~~I~v~ 80 (121)
T PF02338_consen 1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGDKMSKPGTWGGEIELQALANVLNRPIIVY 80 (121)
T ss_dssp -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHHHHTSTTSHEEHHHHHHHHHHHTSEEEEE
T ss_pred CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhccccccCcHHHHHHHHHHhCCeEEEE
Confidence 7999999999999999 4333221 111 11234555554 5899999999999999999999999999
Q ss_pred eCCCCceE----ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcc
Q 023075 242 SGSFPDVE----MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHY 281 (287)
Q Consensus 242 ~~~~~~~~----ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHY 281 (287)
+...+... +...+. .....++|+|+|+.|.|..|.||
T Consensus 81 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 81 SSSDGDNVVFIKFTGKYP---PLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp CETTTBEEEEEEESCEES---TTTTTTSEEEEEETEEEEETTEE
T ss_pred EcCCCCccceeeecCccc---cCCCCCeEEEEEcCCccCCCCCC
Confidence 87654422 222111 23457899999999999999999
No 4
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.2e-15 Score=135.23 Aligned_cols=103 Identities=19% Similarity=0.394 Sum_probs=82.7
Q ss_pred ceEEeeCCCCchHHHHHHHHHhcCCCCCC-----------------cch-hhhHhHHHHHHHhhcCCccCcHHHHHHHHH
Q 023075 171 LTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------SAQ-SQVERFENYCKEVESTAAWGGELELRALTH 232 (287)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------fd~-~~~~~f~eY~~~m~~~~~WGG~lEL~ALS~ 232 (287)
|..+.||.|++|||+||+.-++..-.... |.+ +++..-.+||.+|.+...|||.|||..||+
T Consensus 110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~ 189 (307)
T KOG3288|consen 110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD 189 (307)
T ss_pred eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence 67789999999999999999987543321 333 245677999999999999999999999999
Q ss_pred hhcccEEEEeCCCCce-EecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075 233 CLRKHIMIYSGSFPDV-EMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285 (287)
Q Consensus 233 ~l~~~I~V~~~~~~~~-~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~ 285 (287)
+|+|.|.|++.....+ .||+.- .....+.|.|. |.|||+|.
T Consensus 190 ~ygveI~vvDiqt~rid~fged~------~~~~rv~llyd------GIHYD~l~ 231 (307)
T KOG3288|consen 190 YYGVEICVVDIQTVRIDRFGEDK------NFDNRVLLLYD------GIHYDPLA 231 (307)
T ss_pred hhceeEEEEecceeeehhcCCCC------CCCceEEEEec------ccccChhh
Confidence 9999999999876544 466531 23568999998 89999874
No 5
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=99.29 E-value=3.5e-12 Score=116.40 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=51.6
Q ss_pred cchhhh----HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC--ceEec-CCcCCCCCCCCCCeEEEEec
Q 023075 200 SAQSQV----ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP--DVEMG-KEYSNGGSDSSGSSIILSYH 271 (287)
Q Consensus 200 fd~~~~----~~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~--~~~ig-~e~~~~~~~~~~~~i~L~Y~ 271 (287)
|.+|+. .+|++||. .|...+.=.+++.|.|||.+|+++|.|+..++. ...++ ..|..+ .....+.|+|.|.
T Consensus 157 y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~-~~~~~~~i~LLyr 235 (244)
T PF10275_consen 157 YEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPD-NESQEPQITLLYR 235 (244)
T ss_dssp HGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-S-STTSS-SEEEEEE
T ss_pred HhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCc-cCCCCCEEEEEEc
Confidence 445553 67999997 488888999999999999999999999987754 11111 012100 1234788999998
Q ss_pred cCCCCCCCccccccc
Q 023075 272 RHAFGLGEHYNSVIP 286 (287)
Q Consensus 272 ~h~y~LGeHYnSl~p 286 (287)
. .|||-++|
T Consensus 236 p------gHYdIly~ 244 (244)
T PF10275_consen 236 P------GHYDILYP 244 (244)
T ss_dssp T------BEEEEEEE
T ss_pred C------CccccccC
Confidence 5 59999987
No 6
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.4e-11 Score=117.35 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=85.7
Q ss_pred HHHHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCCC----------------cchhhhHhHHHHHHHhhcCCccC
Q 023075 159 DEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE----------------SAQSQVERFENYCKEVESTAAWG 222 (287)
Q Consensus 159 ~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~----------------fd~~~~~~f~eY~~~m~~~~~WG 222 (287)
...+...+...|+.++.|..||+|+|||++|||++....+. |..|+.++|..|+..++..+.||
T Consensus 206 ~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~g 285 (371)
T KOG2605|consen 206 HERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPG 285 (371)
T ss_pred HHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCc
Confidence 34445555788999999999999999999999999654431 67788899999999999999999
Q ss_pred cHHHHHHHHH---hhcccEEEEeCCCCceE-ecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075 223 GELELRALTH---CLRKHIMIYSGSFPDVE-MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 286 (287)
Q Consensus 223 G~lEL~ALS~---~l~~~I~V~~~~~~~~~-ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p 286 (287)
.++|++|+|. ....++.+.+...+.++ +.+.+. .....+++. |..-.||+.+++
T Consensus 286 nhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~n-----~~~~~h~~~~~~ 343 (371)
T KOG2605|consen 286 NHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIE-----ESVKMEKYN-----FWVEVHYNTARH 343 (371)
T ss_pred chHHHhhhhhhhhhccccceeecccccceeccCcccc-----cchhhhhhc-----ccchhhhhhccc
Confidence 9999999996 44456666655555553 222221 112223333 344689998875
No 7
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.7e-10 Score=104.03 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=58.5
Q ss_pred cchhhh--HhHHHHHHH-hhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce-EecC-CcCCCCCCCCCCeEEEEeccCC
Q 023075 200 SAQSQV--ERFENYCKE-VESTAAWGGELELRALTHCLRKHIMIYSGSFPDV-EMGK-EYSNGGSDSSGSSIILSYHRHA 274 (287)
Q Consensus 200 fd~~~~--~~f~eY~~~-m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~-~ig~-e~~~~~~~~~~~~i~L~Y~~h~ 274 (287)
|.+|++ .+...||.. |.-.+.-.|||+|.|||+++++.|.|.-.+...- .++. .|. ....|.|.|.|..
T Consensus 174 y~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp----e~s~P~I~LLYrp-- 247 (256)
T KOG3991|consen 174 YQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP----EASAPEIYLLYRP-- 247 (256)
T ss_pred hhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc----cccCceEEEEecC--
Confidence 455553 588999995 7777788999999999999999999987664322 2332 332 3457889999974
Q ss_pred CCCCCcccccccC
Q 023075 275 FGLGEHYNSVIPI 287 (287)
Q Consensus 275 y~LGeHYnSl~p~ 287 (287)
.|||-|+|.
T Consensus 248 ----GHYdilY~~ 256 (256)
T KOG3991|consen 248 ----GHYDILYKK 256 (256)
T ss_pred ----CccccccCC
Confidence 699999983
No 8
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=6.6e-06 Score=76.84 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=70.5
Q ss_pred eCCCCchHHHHHHHHHhcCCCC--------------CCcchhh-hHhHHHHHHHhhcCCccC-cHHHHHHHHHhhcccEE
Q 023075 176 IKPDGHCLYRAVEDQLAHLSGG--------------EESAQSQ-VERFENYCKEVESTAAWG-GELELRALTHCLRKHIM 239 (287)
Q Consensus 176 I~~DGnCLFrAIa~QL~~~~~~--------------~~fd~~~-~~~f~eY~~~m~~~~~WG-G~lEL~ALS~~l~~~I~ 239 (287)
..+|..|+|++++..|+.-... ..|.+.. ..+--.||.++.....|| |.+||.+||+.|++.|+
T Consensus 117 ~~~d~srl~q~~~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~ 196 (306)
T COG5539 117 GQDDNSRLFQAERYSLRDASVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH 196 (306)
T ss_pred CCCchHHHHHHHHhhhhhhhHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence 3468899999999988763211 1154443 457789999999999999 99999999999999999
Q ss_pred EEeCCCCc-eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075 240 IYSGSFPD-VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285 (287)
Q Consensus 240 V~~~~~~~-~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~ 285 (287)
|+..+... ..+++. .....+.+.|. |.|||+..
T Consensus 197 ~Vdv~~~~~dr~~~~-------~~~q~~~i~f~------g~hfD~~t 230 (306)
T COG5539 197 VVDVDKDSEDRYNSH-------PYVQRISILFT------GIHFDEET 230 (306)
T ss_pred eeecchhHHhhccCC-------hhhhhhhhhhc------ccccchhh
Confidence 99987432 234421 11234666776 78999753
No 9
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.
Probab=91.43 E-value=0.36 Score=38.27 Aligned_cols=59 Identities=15% Similarity=0.309 Sum_probs=45.3
Q ss_pred eCCCCchHHHHHHHHHhcCCCCCCcchh---h---hHhHHHHHHHhh--cCCccCcHHHHHHHHHhhcccEEEEe
Q 023075 176 IKPDGHCLYRAVEDQLAHLSGGEESAQS---Q---VERFENYCKEVE--STAAWGGELELRALTHCLRKHIMIYS 242 (287)
Q Consensus 176 I~~DGnCLFrAIa~QL~~~~~~~~fd~~---~---~~~f~eY~~~m~--~~~~WGG~lEL~ALS~~l~~~I~V~~ 242 (287)
|..|+|||.-||+..|..+ |+.. + ..++..||.+++ .+.+|-+ -+.+|..|++.|.|--
T Consensus 3 ~sR~NNCLVVAis~~L~~T-----~e~l~~~M~An~~~i~~y~~W~r~~~~STW~D---C~mFA~~LkVsm~vkV 69 (104)
T PF05415_consen 3 ASRPNNCLVVAISECLGVT-----LEKLDNLMQANVSTIKKYHTWLRKKRPSTWDD---CRMFADALKVSMQVKV 69 (104)
T ss_pred ccCCCCeEeehHHHHhcch-----HHHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH---HHHHHHhheeEEEEEE
Confidence 5679999999999999653 4432 1 257899999876 4779965 5689999999988743
No 10
>PF14282 FlxA: FlxA-like protein
Probab=83.96 E-value=13 Score=29.98 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l 89 (287)
+..+.+=.+.++.|+.+|..+.....-.++ .++.+++.|..+|..|++.|.+.+.+.-..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888899999999999998864221222 3356779999999999999998877766554
No 11
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=67.88 E-value=16 Score=32.36 Aligned_cols=45 Identities=38% Similarity=0.462 Sum_probs=38.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 023075 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (287)
Q Consensus 31 ~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh 82 (287)
++-+++|...|..+|..|.+... ++.++.++.++..|+.||.+.-
T Consensus 107 L~s~~~ei~~L~~kI~~L~~~in-------~~~k~~~n~~i~slk~EL~d~i 151 (181)
T PF04645_consen 107 LKSIKKEIEILRLKISSLQKEIN-------KNKKKDLNEEIESLKSELNDLI 151 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhHHHHHHHHHHHH
Confidence 56788999999999999998776 3566789999999999998754
No 12
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=65.94 E-value=7.3 Score=31.79 Aligned_cols=59 Identities=19% Similarity=0.381 Sum_probs=38.5
Q ss_pred eCCCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEe
Q 023075 176 IKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 242 (287)
Q Consensus 176 I~~DGnCLFrAIa~QL~~~~~~~~fd~~~~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~ 242 (287)
=|+||+|-++.|+.-++.--+.. |.. .|...-+.+..|-++--|.=+=..++.|+.+..
T Consensus 4 PP~DG~CG~H~i~aI~n~m~~~~-~t~-------~l~~~~r~~d~W~~dedl~~~iq~l~lPat~~~ 62 (108)
T PF05412_consen 4 PPGDGSCGWHCIAAIMNHMMGGE-FTT-------PLPQRNRPSDDWADDEDLYQVIQSLRLPATLDR 62 (108)
T ss_pred CCCCCchHHHHHHHHHHHhhccC-CCc-------cccccCCChHHccChHHHHHHHHHccCceeccC
Confidence 47899999999998886532111 221 122333456678888777777777788887743
No 13
>PRK09784 hypothetical protein; Provisional
Probab=59.56 E-value=5.2 Score=37.54 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.6
Q ss_pred hccCCceEEeeCCCCchHHHHHH
Q 023075 166 LGPLGLTVNDIKPDGHCLYRAVE 188 (287)
Q Consensus 166 L~~~gL~i~~I~~DGnCLFrAIa 188 (287)
-..+||.-.+|.|||-||.|||.
T Consensus 195 n~~~glkyapvdgdgycllrail 217 (417)
T PRK09784 195 NKTYGLKYAPVDGDGYCLLRAIL 217 (417)
T ss_pred hhhhCceecccCCCchhHHHHHH
Confidence 35689999999999999999986
No 14
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=58.15 E-value=29 Score=29.18 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023075 36 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (287)
Q Consensus 36 kE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 84 (287)
-|+.+|+++|..|--... .++..++.+...|..||..|++--.+
T Consensus 25 iERaEmkarIa~LEGE~r-----~~e~l~~dL~rrIkMLE~aLkqER~k 68 (134)
T PF08232_consen 25 IERAEMKARIAFLEGERR-----GQENLKKDLKRRIKMLEYALKQERAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999998864443 45688899999999999999765543
No 15
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=47.79 E-value=40 Score=32.78 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 023075 30 MLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (287)
Q Consensus 30 l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh 82 (287)
-+.+|++.+++|...++..+++++ .+-.+.+++|+.++.+|.
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~-----------~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLS-----------AEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC-----------hhHHHHHHHHHHHHHHHH
Confidence 367888888888888777776544 255667778888887776
No 16
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.02 E-value=58 Score=28.47 Aligned_cols=54 Identities=37% Similarity=0.542 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023075 36 KEISQLQNKETELKKAAAKGSKAEQ---KAKKKQVEEEISRLSAKLREKHAKELASLG 90 (287)
Q Consensus 36 kE~keLq~~i~~~Kk~a~k~~k~~~---Kk~rK~v~~e~~~le~el~~rh~~EL~~l~ 90 (287)
+++..+++++..++|++....++.+ +...+....|+++|+.+|+. ...|+..|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~-~~~~~~~Lk 181 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK-KEKEIEALK 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4556667888888887754333111 13345678899999999987 666676665
No 17
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=43.49 E-value=55 Score=29.04 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=31.9
Q ss_pred HHHHHhHHHHHHHHHHHHH---HHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEISQLQNKET---ELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~---~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
.+|.+.+|+++......+. .+|.... ++.+++++++..++.+|+.+|....+
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i----~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELI----EEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777777666554321 1111111 12246788888999999988887654
No 18
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=43.27 E-value=12 Score=36.90 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=41.5
Q ss_pred cchhhhHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc
Q 023075 200 SAQSQVERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 247 (287)
Q Consensus 200 fd~~~~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~ 247 (287)
|.+++..+|+.|+..+..|.+-|+.++|.+++.+|+.+...+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~ 49 (371)
T KOG2605|consen 2 FREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMG 49 (371)
T ss_pred CccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccce
Confidence 344556899999999999999999999999999999999988776543
No 19
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=40.85 E-value=1.7e+02 Score=23.88 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhc-------CCccCc-HHHHHHHHHhhcccEEEEeCCCCceE
Q 023075 178 PDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVES-------TAAWGG-ELELRALTHCLRKHIMIYSGSFPDVE 249 (287)
Q Consensus 178 ~DGnCLFrAIa~QL~~~~~~~~fd~~~~~~f~eY~~~m~~-------~~~WGG-~lEL~ALS~~l~~~I~V~~~~~~~~~ 249 (287)
|.-+||--||+.|+..... .=|..-|..+=+ -...|= -=.|.|||..|+....|....+ .+.
T Consensus 1 P~~~CLL~A~s~at~~~~~---------~LW~~L~~~lPDSlL~n~ei~~~GLSTDhltaLa~~~~~~~~~hs~~~-~~~ 70 (104)
T PF05381_consen 1 PALDCLLVAISQATSISPE---------TLWATLCEILPDSLLDNPEIRTLGLSTDHLTALAYRYHFQCTFHSDHG-VLH 70 (104)
T ss_pred CCcceeHHhhhhhhCCCHH---------HHHHHHHHhCchhhcCchhhhhcCCcHHHHHHHHHHHheEEEEEcCCc-eEE
Confidence 3568999999999854321 112222221111 012221 1247799999999988887665 456
Q ss_pred ecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccc
Q 023075 250 MGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNS 283 (287)
Q Consensus 250 ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnS 283 (287)
+|-.- ....+.|.|.. |--.||..
T Consensus 71 ~Gi~~-------as~~~~I~ht~---G~p~HFs~ 94 (104)
T PF05381_consen 71 YGIKD-------ASTVFTITHTP---GPPGHFSL 94 (104)
T ss_pred eecCC-------CceEEEEEeCC---CCCCcccc
Confidence 77532 24556665554 33468865
No 20
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=39.67 E-value=80 Score=30.97 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH--HHHHHHHH
Q 023075 27 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE--KHAKELAS 88 (287)
Q Consensus 27 ~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~--rh~~EL~~ 88 (287)
+|.++++|+.|..-||.++++++.... +-.+|-..|-+||.+ +.+++|.+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~------------Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECG------------EKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHh------------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999987655 556677777666654 56677765
No 21
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=37.85 E-value=1.2e+02 Score=23.34 Aligned_cols=42 Identities=36% Similarity=0.509 Sum_probs=24.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 023075 32 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (287)
Q Consensus 32 ~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~r 81 (287)
..+-.|+-.++.++-.|-.+-. |-|..-.+||++|..+|+.|
T Consensus 35 ~~Qi~Em~~ir~~v~eLE~~h~--------kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 35 NSQIQEMQQIRQKVYELEQAHR--------KMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhh
Confidence 3344444444555555544444 56667777777777777665
No 22
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=37.51 E-value=1.9e+02 Score=22.14 Aligned_cols=45 Identities=18% Similarity=0.393 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 32 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 32 ~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
...+-|..+|++....|..+.. +.+|+.+..++..|-..|+.+..
T Consensus 27 ~hm~~e~~~L~~~~~~~d~s~~-------~~~R~~L~~~l~~lv~~mE~K~d 71 (79)
T PF06657_consen 27 GHMKMEHQELQDEYKQMDPSLG-------RRKRRDLEQELEELVKRMEAKAD 71 (79)
T ss_pred HHHHHHHHHHHHHHHhcccccC-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665444 57899999999999999998764
No 23
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=36.68 E-value=2.4e+02 Score=30.27 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 023075 72 SRLSAKLREKHAKELASL 89 (287)
Q Consensus 72 ~~le~el~~rh~~EL~~l 89 (287)
++++..|+.+.+.|+..-
T Consensus 295 ekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 295 EKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555543
No 24
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=36.03 E-value=1.5e+02 Score=25.53 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023075 32 SRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87 (287)
Q Consensus 32 ~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~ 87 (287)
.+--++.++|+..|..+|+....-+-++.=.+=-.++.++.+|+.||+...+.-..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888877653332222222334677788888888776544443
No 25
>PF05104 Rib_recp_KP_reg: Ribosome receptor lysine/proline rich region; InterPro: IPR007794 The ribosome receptor is an integral endoplasmic reticulum protein that has been suggested to be involved in secretion. This highly conserved region is found towards the C terminus of the transmembrane domain []. The function is unclear.; GO: 0015031 protein transport, 0030176 integral to endoplasmic reticulum membrane
Probab=34.65 E-value=20 Score=30.95 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.2
Q ss_pred cccHHHHHHhHHHHHHHHH
Q 023075 24 QETRDEMLSRHRKEISQLQ 42 (287)
Q Consensus 24 ~~~~e~l~~RHrkE~keLq 42 (287)
+.|+|+.|+.+|+|+--+|
T Consensus 3 EtSYEEaLAkQrke~~K~~ 21 (151)
T PF05104_consen 3 ETSYEEALAKQRKELEKTQ 21 (151)
T ss_pred cccHHHHHHHHHHHhhccc
Confidence 4578999999999994444
No 26
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=34.07 E-value=72 Score=24.72 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHH
Q 023075 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 77 (287)
Q Consensus 33 RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~e 77 (287)
+=.++.++||..+..|---+. .|..+|.+|+.|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve------------~Vk~E~~kL~~E 52 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVE------------EVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Confidence 334467777777776654333 788888888765
No 27
>PRK11546 zraP zinc resistance protein; Provisional
Probab=33.69 E-value=2e+02 Score=24.65 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=38.7
Q ss_pred ccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 23 KQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 23 ~~~~~e~l~~RHrkE~keLq~~i~~~Kk~a------~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
+...++.|.+.+..+--+|..++.+.+=.. ++.|. ++=+.+..||..|...|.++|.
T Consensus 48 QQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~----~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 48 QQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDS----SKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677788777777766655433221 34453 5567899999999999988775
No 28
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=33.59 E-value=1.4e+02 Score=29.37 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=36.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~ 80 (287)
.+.+..=..++..|+.+|..+.....++.| .+++++++.++++.++.++.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k--~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPK--KKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 455666677788888888888876543333 256778899999998887766
No 29
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.22 E-value=1.5e+02 Score=28.69 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=29.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHH----HHHHHHHH
Q 023075 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSA----KLREKHAK 84 (287)
Q Consensus 31 ~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~----el~~rh~~ 84 (287)
+.+-|+-+++|-..|+.||..+. +|..|+..++. .+.+||+.
T Consensus 19 L~~ir~rk~qL~deIq~Lk~Ei~------------ev~~eid~~~~~e~skt~q~~k~ 64 (395)
T KOG0930|consen 19 LENIRRRKQELLDEIQRLKDEIA------------EVMEEIDNLESTEESKTKQRNKQ 64 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhhhhccccchhhHHHhHH
Confidence 44555666777888888887766 88888888764 55666654
No 30
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=33.01 E-value=87 Score=28.46 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=37.2
Q ss_pred ccCcHH----HHHHHHHhhcccEEEEeCCCC-ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075 220 AWGGEL----ELRALTHCLRKHIMIYSGSFP-DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 286 (287)
Q Consensus 220 ~WGG~l----EL~ALS~~l~~~I~V~~~~~~-~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p 286 (287)
.|||.- .+..+|+.+++|+.++..|-= .+..|.. ..+|.+|.+... |.+|+|..|
T Consensus 5 ~wg~~~~~~~~~~~~a~~~~i~~~~~E~G~lR~~~~~~~--------~~~P~s~~~D~~----Gv~~~s~~~ 64 (269)
T PF05159_consen 5 VWGDKRPYHRAAIEVAKELGIPVIFFEDGFLRSIGLGSD--------GYPPDSLTIDPQ----GVNADSSLP 64 (269)
T ss_pred EECCCccHHHHHHHHHHHhCCCEEEEecCcccccccccc--------CCCCeEEEECCC----CccCCCCCc
Confidence 588863 345668999999999987631 1222221 256788888764 889998765
No 31
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.89 E-value=1.8e+02 Score=23.17 Aligned_cols=44 Identities=16% Similarity=0.426 Sum_probs=31.4
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~ 80 (287)
.+.+++.....+.+..+...|..+.+ +.+.+..++..++..|.+
T Consensus 63 ~~~~e~~~~l~~r~e~ie~~i~~lek------------~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 63 TDKEEAIQELKEKKETLELRVKTLQR------------QEERLREQLKELQEKIQE 106 (110)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888777764 344677777777777765
No 32
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.96 E-value=1.8e+02 Score=22.76 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=13.1
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 023075 61 KAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 61 Kk~rK~v~~e~~~le~el~~ 80 (287)
+..-+.+.+++..|+.++.+
T Consensus 73 ~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44456777777777776654
No 33
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=31.94 E-value=90 Score=30.17 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 34 HrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
.-|.+.+|+.+|..|++.... ..-.+.++|..||..+.+...
T Consensus 8 fe~~i~~l~~~~~~l~~~~~~--------~~~~~~~~~~~l~~~~~~~~~ 49 (316)
T TIGR00513 8 FEKPIAELEAKIESLRARSRD--------EDVDLSEEIERLEKRSVELTK 49 (316)
T ss_pred hhHHHHHHHHHHHHHHhhhhc--------ccccHHHHHHHHHHHHHHHHH
Confidence 457889999999999986652 234788999999998776543
No 34
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.92 E-value=2e+02 Score=24.58 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 023075 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 31 ~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~ 80 (287)
++.-+.+.+.|.+.+..|.+..|-.+= ...-.++..+|..|+..|..
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el---~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEEL---REEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888776652111 23445666677777766664
No 35
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=31.56 E-value=1e+02 Score=29.89 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 34 HrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
.-|.+.+|+.+|..|++....+ .-.+.+||.+||..+++-.+
T Consensus 8 fe~~i~~l~~~i~~l~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 49 (319)
T PRK05724 8 FEKPIAELEAKIEELRAVAEDS--------DVDLSEEIERLEKKLEELTK 49 (319)
T ss_pred hhhHHHHHHHHHHHHHhhhccc--------cccHHHHHHHHHHHHHHHHH
Confidence 4577899999999999865522 24789999999998776543
No 36
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=31.02 E-value=61 Score=23.66 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred hHHHHHHHHhccCCceEEeeCCCCchHHHHHHHHHhc
Q 023075 157 VEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAH 193 (287)
Q Consensus 157 ~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~ 193 (287)
+|.+++...---.+..++-+-+-|.|-| +|.+|+..
T Consensus 2 IE~qai~AL~hL~~~ilfi~D~Se~CGy-sie~Q~~L 37 (58)
T PF06858_consen 2 IEMQAITALAHLADAILFIIDPSEQCGY-SIEEQLSL 37 (58)
T ss_dssp HHHHHHHGGGGT-SEEEEEE-TT-TTSS--HHHHHHH
T ss_pred hhHHHHHHHHhhcceEEEEEcCCCCCCC-CHHHHHHH
Confidence 5777776554455666788889999999 88998864
No 37
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=30.37 E-value=1.4e+02 Score=22.04 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=33.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el 78 (287)
.+=+.||...++++..++..+.+.-...+ +.-+.++.++.+++..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e-----~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANE-----KDIKNLNKQLEKIKSNT 50 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34478899999999999998887766332 23477888888777654
No 38
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=29.17 E-value=2.2e+02 Score=22.40 Aligned_cols=45 Identities=11% Similarity=0.382 Sum_probs=30.7
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~r 81 (287)
.+.+++.......+..|...|..+.++. +.+..++..++.+|.+-
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~------------~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQE------------EDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 3567777777777777777777665433 36777777777777654
No 39
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=29.07 E-value=75 Score=28.61 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=34.1
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 023075 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 26 ~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el 78 (287)
+..+...+ ..++..|+..|..+++.+.|-. |=++|=+++.++.++++||
T Consensus 173 ~~~~~~~~-~~~i~~L~kei~~L~~~~~kEk---q~nrkveln~elk~l~~eL 221 (221)
T PF14335_consen 173 SLWERIER-LEQIEKLEKEIAKLKKKIKKEK---QFNRKVELNTELKKLKKEL 221 (221)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcC
Confidence 44444444 3567888888988888777432 2456778999999888775
No 40
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=29.06 E-value=1.6e+02 Score=25.28 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHhc
Q 023075 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR---EKHAKELASLG 90 (287)
Q Consensus 35 rkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~---~rh~~EL~~l~ 90 (287)
+.++++....|..||+++.- =-++..+|+.|+.+.+ +.|+.+|..+.
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d---------~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKD---------NEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777764331 2478888888887766 57777777653
No 41
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=28.79 E-value=50 Score=31.88 Aligned_cols=77 Identities=27% Similarity=0.285 Sum_probs=47.7
Q ss_pred hHHHHHHHHhccCCceEEe------------eCCCCch--HHHHHHHHHhcCC--------CCCC---------cchhhh
Q 023075 157 VEDEKLEKKLGPLGLTVND------------IKPDGHC--LYRAVEDQLAHLS--------GGEE---------SAQSQV 205 (287)
Q Consensus 157 ~E~~~l~~~L~~~gL~i~~------------I~~DGnC--LFrAIa~QL~~~~--------~~~~---------fd~~~~ 205 (287)
-+.+-+..+-..-||.-+- -.+|-.| -|.|+++|+..-- ...+ +...+.
T Consensus 234 t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G~vDaIvLTGGiA~~~~f~ 313 (358)
T COG3426 234 TEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKGKVDAIVLTGGIAYEKLFV 313 (358)
T ss_pred cHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCEEEEecchhhHHHHH
Confidence 3444455555555554321 2355555 3889999986421 1111 222233
Q ss_pred HhHHHHHHHhhcCCccCcHHHHHHHHHh
Q 023075 206 ERFENYCKEVESTAAWGGELELRALTHC 233 (287)
Q Consensus 206 ~~f~eY~~~m~~~~~WGG~lEL~ALS~~ 233 (287)
.-..+|+.++..--.+.|+.||.|||.-
T Consensus 314 ~~I~~~v~~iapv~v~PGE~EleALA~G 341 (358)
T COG3426 314 DAIEDRVSWIAPVIVYPGEDELEALAEG 341 (358)
T ss_pred HHHHHHHhhhcceEecCCchHHHHHHhh
Confidence 4678888888888899999999999863
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.50 E-value=2.9e+02 Score=22.64 Aligned_cols=47 Identities=6% Similarity=0.252 Sum_probs=31.6
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 023075 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (287)
Q Consensus 26 ~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~r 81 (287)
|.++| +..|.+++..+..+++=..+.. ++.-+++.+|+.+.+.|+..
T Consensus 31 S~~eL-~kqkd~L~~~l~~L~~q~~s~~--------qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 31 SQGEL-AKQKDQLRNALQSLQAQNASRN--------QRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34444 6666666666666666666666 56678888888888877763
No 43
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=28.04 E-value=1.8e+02 Score=22.87 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=34.8
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 24 QETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 24 ~~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
+.|.++-...-.+-++.|+..+..+.+... .+..++..++..|.+.+.
T Consensus 72 E~s~~eA~~~l~~r~~~l~~~~~~l~~~~~------------~~~~~~~~~~~~l~~~~~ 119 (120)
T PF02996_consen 72 EMSLEEAIEFLKKRIKELEEQLEKLEKELA------------ELQAQIEQLEQTLQQLYQ 119 (120)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHCHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhc
Confidence 345666667777777778887777765444 788888888888887764
No 44
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=27.31 E-value=1.2e+02 Score=30.71 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 34 HrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
.-|.+.+|+.+|..|++....+ .-.+.+||.+||..+.+-..
T Consensus 78 fe~pi~ele~ki~el~~~~~~~--------~~~~~~ei~~l~~~~~~~~~ 119 (431)
T PLN03230 78 FEKPIVDLENRIDEVRELANKT--------GVDFSAQIAELEERYDQVRR 119 (431)
T ss_pred hhhHHHHHHHHHHHHHhhhhcc--------cccHHHHHHHHHHHHHHHHH
Confidence 4578899999999999866522 35789999999998766543
No 45
>PRK11020 hypothetical protein; Provisional
Probab=27.24 E-value=1.8e+02 Score=24.16 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHh
Q 023075 29 EMLSRHRKEISQLQNKETELKK 50 (287)
Q Consensus 29 ~l~~RHrkE~keLq~~i~~~Kk 50 (287)
++.+.|.+|+..|..+|..+|.
T Consensus 31 ~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 31 EKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666653
No 46
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.91 E-value=1.1e+02 Score=29.56 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023075 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELA 87 (287)
Q Consensus 34 HrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~ 87 (287)
+-|...+|+++|..+++....+ .-.+.++|.+||..+.+--..--.
T Consensus 7 fEkpi~ele~kI~~l~~~~~~~--------~~~~~~eI~~Le~~~~~~~~~iy~ 52 (317)
T COG0825 7 FEKPIAELEAKIDELKALAEEN--------DVDLSDEIERLEKRLAELTKKIYS 52 (317)
T ss_pred hhhHHHHHHHHHHHHHhhcccc--------ccchHHHHHHHHhhHHHHhhhhhc
Confidence 4578899999999999877633 347999999999887765544333
No 47
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.77 E-value=2.6e+02 Score=21.29 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=32.6
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 023075 26 TRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 26 ~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~ 80 (287)
+.+++...-...++.|+..|..|++. .+.+..++..++..|.+
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~------------~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQ------------LKYLEKKLKELKKKLYE 101 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 56788888888888999988888753 44677777777777654
No 48
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=26.54 E-value=1.2e+02 Score=29.40 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023075 34 HRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (287)
Q Consensus 34 HrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 84 (287)
.-|.+.+|+.+|..|++....+ .-.+.+||.+|+..+.+...+
T Consensus 11 fe~~i~el~~~i~~l~~~~~~~--------~~~~~~~i~~l~~~~~~~~~~ 53 (322)
T CHL00198 11 FMKPLAELESQVEELSKLAPKN--------DKVINNKLKSFQRKLRILKKE 53 (322)
T ss_pred hhhhHHHHHHHHHHHHhhhccc--------ccCHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999855421 247899999999988776544
No 49
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=26.51 E-value=1.6e+02 Score=28.74 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=46.8
Q ss_pred cccccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023075 22 KKQETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKEL 86 (287)
Q Consensus 22 ~~~~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL 86 (287)
...||+++=++|=+.|..+|...+..++....+.+ +.+..--.|...++.|...|..=|-.++
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~--~e~~~~~~l~~~~~~L~~~L~~l~l~~~ 149 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESD--EEKISPEELAQQLEELSKQLDSLKLEEL 149 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cccCChhhHHHHHHHHHHHHHHhhcccc
Confidence 35788999999999999999999988876554332 1123445678899999998888765444
No 50
>smart00718 DM4_12 DM4/DM12 family of domains in Drosophila melanogaster proteins of unknown function.
Probab=25.85 E-value=57 Score=25.69 Aligned_cols=31 Identities=39% Similarity=0.634 Sum_probs=25.1
Q ss_pred chhHHHHHHHHhccCCceEEeeCCCC-chHHHHHHHHHh
Q 023075 155 RTVEDEKLEKKLGPLGLTVNDIKPDG-HCLYRAVEDQLA 192 (287)
Q Consensus 155 r~~E~~~l~~~L~~~gL~i~~I~~DG-nCLFrAIa~QL~ 192 (287)
|..=.+.|...|...|+ || .||-|||-..-.
T Consensus 6 R~~lY~~lE~~l~~~G~-------~g~~ClLR~ICE~a~ 37 (95)
T smart00718 6 RRLLYEALENLLDQLGF-------NGRACLLRAICESAQ 37 (95)
T ss_pred HHHHHHHHHHHHHHcCC-------CchhhHHHHHHHccc
Confidence 55667788889999987 77 999999987554
No 51
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.51 E-value=1.9e+02 Score=30.09 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=25.2
Q ss_pred HHHHHhHHHHH----HHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEI----SQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELAS 88 (287)
Q Consensus 28 e~l~~RHrkE~----keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~ 88 (287)
+++.++|+.++ ..++..+..|++.+- .+.+..+..+|.+ |...|+++|++
T Consensus 470 e~~q~~~~~~l~~~~~~~~~em~~~r~tlE-------~k~~~n~~e~~kk----l~~~~qr~l~e 523 (588)
T KOG3612|consen 470 EELQQTSRRELPVPLRNFELEMAEMRKTLE-------QKHAENIKEEIKK----LAEEHQRALAE 523 (588)
T ss_pred HHHHHHHhhhhhhhhhcchHHHHHHHHHHH-------HHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 45556666665 333444555555554 2333444444443 34556666665
No 52
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=24.87 E-value=83 Score=32.67 Aligned_cols=52 Identities=27% Similarity=0.313 Sum_probs=40.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 84 (287)
|-..++---|+.+||++|.-|. |+-+.++.-|+.+...+..||..|++.|+.
T Consensus 33 E~dr~~WElERaElqariAfLq-----gErk~qenlk~dl~rR~kmlE~~lkeerak 84 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIAFLQ-----GERKGQENLKMDLVRRIKMLEFALKEERAK 84 (577)
T ss_pred hhhhhheehhhhhHHHHHHHHh-----cchhhhHHHHHHHHHHHhcccchhHHhhhh
Confidence 3445666789999999999985 333345677889999999999999998864
No 53
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=24.82 E-value=3.1e+02 Score=20.77 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=46.3
Q ss_pred ccccccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023075 21 QKKQETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASL 89 (287)
Q Consensus 21 ~~~~~~~e~l~~RHrkE~keLq~~i~~~Kk~a------~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l 89 (287)
.+......+|...|+.+..++...+..++..+ ++.|. .+=..+.+++..+..+|......=+-.+
T Consensus 44 ~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~----~~i~a~~~~~~~~~~~l~~~~~~~~~~~ 114 (125)
T PF13801_consen 44 PEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDE----AAIEALLEEIREAQAELRQERLEHLLEI 114 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567788999999999988888777665 34554 5567888888888888887765554443
No 54
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=24.81 E-value=1.3e+02 Score=29.26 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=38.1
Q ss_pred CceEEeeCCCCchHHHHHHHHHhcCCCCCCcchhhhHhHHHHHHHhhcCCccCcHHH-------HHHHHHhhcccEEEEe
Q 023075 170 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVERFENYCKEVESTAAWGGELE-------LRALTHCLRKHIMIYS 242 (287)
Q Consensus 170 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~fd~~~~~~f~eY~~~m~~~~~WGG~lE-------L~ALS~~l~~~I~V~~ 242 (287)
+.++.-|=.||-||=-++|..+........++ .-|.--..|||++| |.|.-.+++.+|.|+.
T Consensus 114 ~~riaYIMtDggALP~~fS~~v~~Lk~~g~l~-----------~tIT~GqAFGGD~EaVni~t~LlaA~~v~~ADv~iV~ 182 (320)
T PF12982_consen 114 DARIAYIMTDGGALPLAFSRTVAELKEKGLLD-----------ATITCGQAFGGDLEAVNIYTALLAARHVLKADVAIVA 182 (320)
T ss_pred CCeEEEEEeCCcCccHHHHHHHHHHHhCCcee-----------eeEEeccccCCchhhhhHHHHHHHHHHHhCCCEEEEe
Confidence 45555666666666555554443221111011 01223457999999 7888888999999997
Q ss_pred CC
Q 023075 243 GS 244 (287)
Q Consensus 243 ~~ 244 (287)
.+
T Consensus 183 ~G 184 (320)
T PF12982_consen 183 MG 184 (320)
T ss_pred cC
Confidence 65
No 55
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=24.32 E-value=4.5e+02 Score=22.91 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=25.2
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 023075 24 QETRDEMLSRHRKEISQLQNKETELKKAAAK 54 (287)
Q Consensus 24 ~~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k 54 (287)
...++.+..+|-.|+..+|..+.++.+...+
T Consensus 46 ~~~le~~f~~~~~~lq~~~~el~~~~~kL~~ 76 (170)
T COG2825 46 SADLESEFKKRQKELQKMQKELKAKEAKLQD 76 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567889999999999888888888776664
No 56
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=24.18 E-value=2.9e+02 Score=24.69 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=34.1
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~ 79 (287)
..+-.|+++|..|.+-|+.++-..+.... .-.++-|.++.++-++..++.
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r-----~~~~klk~~~~el~k~~~~l~ 106 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQER-----ELERKLKDKDEELLKTKDELK 106 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999998655544332 012445677777777777665
No 57
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.63 E-value=1.9e+02 Score=30.22 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023075 67 VEEEISRLSAKLREKHAKELASL 89 (287)
Q Consensus 67 v~~e~~~le~el~~rh~~EL~~l 89 (287)
-+++|.+|+++|..-|..++.+.
T Consensus 392 kkEec~kme~qLkkAh~~~ddar 414 (654)
T KOG4809|consen 392 KKEECSKMEAQLKKAHNIEDDAR 414 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhh
Confidence 36899999999999999998865
No 58
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=22.20 E-value=2.7e+02 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 35 rkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
+-++-+|..-|+..++.+.+..- --=++.+.+.+.+|..||+.+-+
T Consensus 340 ~d~lnELE~~i~~~r~~~~~AtN---PiL~~RF~~~~n~l~kElElkrk 385 (392)
T COG5414 340 ADELNELEKGIEEKRRQMESATN---PILQKRFESQLNVLLKELELKRK 385 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777889999888887752211 13468899999999999887654
No 59
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.76 E-value=1.7e+02 Score=29.41 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHH
Q 023075 27 RDEMLSRHRKEISQLQ 42 (287)
Q Consensus 27 ~e~l~~RHrkE~keLq 42 (287)
+|+|...|.+|+.-|+
T Consensus 354 iEdLQRqHqRELekLr 369 (593)
T KOG4807|consen 354 IEDLQRQHQRELEKLR 369 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4667777777777665
No 60
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=21.00 E-value=1.2e+02 Score=20.22 Aligned_cols=30 Identities=10% Similarity=0.024 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCccCcHHHHHHHHHhhcccE
Q 023075 209 ENYCKEVESTAAWGGELELRALTHCLRKHI 238 (287)
Q Consensus 209 ~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I 238 (287)
..++.++.+...+=..-.+.+||.+|++++
T Consensus 23 ~~~i~~~~~g~~~~~~~~~~~ia~~l~~~~ 52 (55)
T PF01381_consen 23 RSTISRIENGKRNPSLDTLKKIAKALGVSP 52 (55)
T ss_dssp HHHHHHHHTTSSTSBHHHHHHHHHHHTSEH
T ss_pred cchhHHHhcCCCCCCHHHHHHHHHHHCCCH
Confidence 445666666666777788999999999886
No 61
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=20.79 E-value=3.9e+02 Score=29.87 Aligned_cols=27 Identities=19% Similarity=0.211 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhcc
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAK 54 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k 54 (287)
-.|...|-+|.|||+.+.+..+..-.|
T Consensus 1081 k~LK~~~e~e~kElk~~l~kkr~e~ik 1107 (1189)
T KOG1265|consen 1081 KALKESLEKETKELKKKLDKKRMEDIK 1107 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566666777776665554443333
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.76 E-value=3.4e+02 Score=28.80 Aligned_cols=46 Identities=30% Similarity=0.473 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023075 27 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAK 84 (287)
Q Consensus 27 ~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~ 84 (287)
.+....|-..|.++|++.|..||+-.- .+..+|+++-.++...+..
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie------------~L~~~l~~~~r~~~~~~~~ 472 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIE------------KLESELERFRREVRDKVRK 472 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhh
Confidence 366677777788888888877775444 5667777777766655543
No 63
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=20.19 E-value=3.7e+02 Score=19.89 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=34.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCCh---hHHHhhhHHHHHHHHHHHHHH
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSK---AEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k---~~~Kk~rK~v~~e~~~le~el 78 (287)
+--++|-|.|-+|+-+-|.+|-- +.-|- +-=||+|=.+.+++.+||..+
T Consensus 10 rl~~arLrqeH~D~DaaInAmi~--~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 10 RLTLARLRQEHADFDAAINAMIA--TGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH--hCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 44589999999999988887764 22222 222466678888999888654
No 64
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.07 E-value=3.4e+02 Score=21.45 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=29.0
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh 82 (287)
.+.++....=.+-+..|+..+..|.+... .+..++..++..|.+.+
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~------------~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLE------------KLQDQITELQEELQQLQ 128 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhc
Confidence 45566655555556666666666665554 56667777777776654
No 65
>PF03255 ACCA: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (6.4.1.2 from EC). It catalyses the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association []. The reaction involves two steps: Biotin carrier protein + ATP + HCO3 - -> Carboxybiotin carrier protein + ADP + Pi Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex; PDB: 2F9I_A 2F9Y_A.
Probab=20.00 E-value=15 Score=31.54 Aligned_cols=38 Identities=37% Similarity=0.484 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHH
Q 023075 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLRE 80 (287)
Q Consensus 35 rkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~ 80 (287)
-+.+++|+.+|..|++.+.. ..-.+.++|.+|+..+..
T Consensus 6 Ek~I~ele~kI~eL~~~~~~--------~~~d~~~ei~~Le~k~~~ 43 (145)
T PF03255_consen 6 EKPIKELEEKIEELKKLAEE--------GGIDLSDEIASLEEKLEK 43 (145)
T ss_dssp CHHHHHCCCCCC----------------------TCHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHhh--------cCCCHHHHHHHHHHHHHH
Confidence 35678899999999876652 234678888888888765
Done!