Query 023075
Match_columns 287
No_of_seqs 209 out of 956
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:56:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023075.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023075hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 1.8E-35 6.2E-40 259.2 6.0 129 147-286 35-181 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 1.1E-30 3.6E-35 233.4 9.1 106 167-286 16-139 (212)
3 3phx_A RNA-directed RNA polyme 99.9 9.7E-28 3.3E-32 210.2 9.3 105 171-287 31-160 (185)
4 3phu_A RNA-directed RNA polyme 99.9 1.1E-27 3.8E-32 214.7 8.8 105 171-287 31-160 (219)
5 1tff_A Ubiquitin thiolesterase 99.8 1.6E-21 5.5E-26 176.3 8.2 78 200-287 150-231 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 1.1E-20 3.8E-25 170.7 8.6 77 200-286 153-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.7 1.1E-17 3.6E-22 154.9 6.2 81 200-287 188-274 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 5.6E-17 1.9E-21 156.6 7.9 77 200-286 318-399 (399)
9 3dkb_A Tumor necrosis factor, 98.4 5.9E-07 2E-11 85.1 7.9 113 169-287 110-283 (390)
10 3zrh_A Ubiquitin thioesterase 98.1 6.2E-06 2.1E-10 79.4 9.2 111 170-286 188-348 (454)
11 3lay_A Zinc resistance-associa 49.3 49 0.0017 27.9 7.2 56 24-83 73-134 (175)
12 3i00_A HIP-I, huntingtin-inter 45.1 95 0.0033 24.6 7.9 50 25-82 11-60 (120)
13 1l8d_A DNA double-strand break 42.2 55 0.0019 24.7 6.0 41 27-79 62-102 (112)
14 3he5_B Synzip2; heterodimeric 39.5 80 0.0028 20.8 5.5 36 31-78 12-47 (52)
15 3mq7_A Bone marrow stromal ant 36.6 74 0.0025 25.4 5.8 15 35-49 70-84 (121)
16 3twe_A Alpha4H; unknown functi 36.3 30 0.001 20.0 2.6 17 35-51 7-23 (27)
17 1jad_A PLC-beta, phospholipase 35.5 1.2E+02 0.0041 27.1 7.7 53 28-90 77-129 (251)
18 1mdc_A Insect fatty acid bindi 34.2 57 0.0019 25.9 5.0 37 205-248 13-49 (132)
19 4h22_A Leucine-rich repeat fli 33.3 72 0.0024 24.8 5.2 45 25-81 40-84 (103)
20 3azd_A Short alpha-tropomyosin 31.3 14 0.00046 23.5 0.6 29 38-78 6-34 (37)
21 2xu6_A MDV1 coiled coil; prote 30.7 80 0.0027 23.0 4.7 30 36-77 21-50 (72)
22 1ci6_A Transcription factor AT 29.5 1.2E+02 0.0042 20.9 5.5 35 33-79 20-54 (63)
23 1gmj_A ATPase inhibitor; coile 29.3 61 0.0021 24.3 4.0 23 67-90 56-78 (84)
24 1ftp_A Muscle fatty acid bindi 29.1 1E+02 0.0035 24.3 5.7 37 205-247 14-50 (133)
25 1jad_A PLC-beta, phospholipase 28.0 3.1E+02 0.011 24.4 9.2 19 27-45 125-143 (251)
26 1lpj_A Retinol-binding protein 26.5 84 0.0029 24.9 4.7 34 205-244 13-46 (133)
27 3ppt_A Sodium-calcium exchange 26.0 1.1E+02 0.0039 24.2 5.4 34 205-244 13-46 (133)
28 1vyf_A SM14, 14 kDa fatty acid 25.5 92 0.0031 24.7 4.8 34 205-244 15-48 (135)
29 3pzp_A DNA polymerase kappa; D 25.2 62 0.0021 31.6 4.4 72 120-191 32-108 (517)
30 1o8v_A Fatty acid binding prot 24.3 1.3E+02 0.0044 23.8 5.5 32 205-242 14-45 (134)
31 2rcq_A CRBP-II, retinol-bindin 24.0 1.1E+02 0.0037 24.6 5.0 34 205-244 17-50 (141)
32 2eqb_B RAB guanine nucleotide 23.9 2.4E+02 0.0084 21.5 6.8 40 35-79 18-57 (97)
33 3viq_B Mating-type switching p 23.9 59 0.002 24.4 3.1 29 38-78 3-31 (85)
34 4a5u_A RNA replicase polyprote 23.8 2.7E+02 0.0091 23.2 7.4 90 174-285 57-155 (160)
35 1b56_A Fatty acid binding prot 23.8 1.4E+02 0.0047 23.7 5.5 34 205-244 16-49 (135)
36 1gmj_A ATPase inhibitor; coile 23.7 2.2E+02 0.0075 21.2 6.2 23 31-53 53-75 (84)
37 1eal_A Gastrotropin, ileal lip 22.9 97 0.0033 24.3 4.4 39 205-250 11-49 (127)
38 1mvg_A Liver basic fatty acid 22.9 1.1E+02 0.0038 23.9 4.8 34 205-244 11-44 (125)
39 2dgc_A Protein (GCN4); basic d 22.8 1.2E+02 0.0041 21.1 4.4 14 66-79 48-61 (63)
40 1p6p_A Fatty acid-binding prot 22.1 1.1E+02 0.0039 23.8 4.7 34 205-244 11-44 (125)
41 3hnw_A Uncharacterized protein 21.9 2E+02 0.0068 23.1 6.2 17 64-80 119-135 (138)
42 3q8j_A Asteropsin A, ABU8-1; c 21.6 14 0.00049 22.9 -0.6 17 168-184 20-36 (37)
43 1crb_A Cellular retinol bindin 20.3 1.4E+02 0.0049 23.5 5.0 34 205-244 13-46 (134)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=100.00 E-value=1.8e-35 Score=259.23 Aligned_cols=129 Identities=25% Similarity=0.371 Sum_probs=93.4
Q ss_pred HHhcccCCchhHHHHHHHHhccCCceEEeeCCCCchHHHHHHHHHhcCCCCC----------------CcchhhhHhHHH
Q 023075 147 EQSNIVSDRTVEDEKLEKKLGPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESAQSQVERFEN 210 (287)
Q Consensus 147 e~~~~~~~r~~E~~~l~~~L~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~fd~~~~~~f~e 210 (287)
|+...++.|..|..-++..|+.+||.++.||+|||||||||++||++.+..+ .|.+|+.++|++
T Consensus 35 ~~~~~~~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~ 114 (185)
T 3pfy_A 35 EAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTT 114 (185)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------
T ss_pred HhccCCCHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 4555566799999999999999999999999999999999999999876543 188888899999
Q ss_pred HHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe--cCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075 211 YCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM--GKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 286 (287)
Q Consensus 211 Y~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~i--g~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p 286 (287)
||.+|+++++|||+|||+|||++|+++|+||+.+++++.+ |.+. ...++|+|+||+ |+|||||++
T Consensus 115 Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~------~~~~~I~L~Y~~-----~~HYnSv~~ 181 (185)
T 3pfy_A 115 YINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQ------NEDEPIRVSYHR-----NIHYNSVVN 181 (185)
T ss_dssp -----------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSC------CTTSCEEEEEET-----TTEEEEEEC
T ss_pred HHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccC------CCCCEEEEEECC-----CCCcccccC
Confidence 9999999999999999999999999999999988765543 3322 236899999998 699999985
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.96 E-value=1.1e-30 Score=233.35 Aligned_cols=106 Identities=18% Similarity=0.334 Sum_probs=91.0
Q ss_pred ccCCceEEeeCCCCchHHHHHHHHHhcCCCCC----------------Ccc-hhhhHhHHHHHHHhhcCCccCcHHHHHH
Q 023075 167 GPLGLTVNDIKPDGHCLYRAVEDQLAHLSGGE----------------ESA-QSQVERFENYCKEVESTAAWGGELELRA 229 (287)
Q Consensus 167 ~~~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~----------------~fd-~~~~~~f~eY~~~m~~~~~WGG~lEL~A 229 (287)
...||.+++||+|||||||||++|| +.+..+ .|. .+++.+|++||.+|+++++|||+|||+|
T Consensus 16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A 94 (212)
T 3by4_A 16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI 94 (212)
T ss_dssp CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence 4457999999999999999999999 655443 175 4457899999999999999999999999
Q ss_pred HHHhhcccEEEEeCCC-CceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCccccccc
Q 023075 230 LTHCLRKHIMIYSGSF-PDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIP 286 (287)
Q Consensus 230 LS~~l~~~I~V~~~~~-~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p 286 (287)
||++|+++|.||+.++ +.+.||+++ ..++|+|+|+ |+|||||++
T Consensus 95 ls~~~~~~I~V~~~~~~~~~~~~~~~-------~~~~I~L~Y~------g~HYdsl~~ 139 (212)
T 3by4_A 95 ISDALAVAIYVVDIDAVKIEKFNEDK-------FDNYILILFN------GIHYDSLTM 139 (212)
T ss_dssp HHHHHTCEEEEEETTTTEEEEESTTT-------CSEEEEEEEC------SSCEEEEEE
T ss_pred HHHHHCCCEEEEECCCCCeEEeCCCC-------CCCeEEEEEc------CCcceEEec
Confidence 9999999999999874 566788754 2679999997 899999985
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.94 E-value=9.7e-28 Score=210.20 Aligned_cols=105 Identities=19% Similarity=0.347 Sum_probs=84.2
Q ss_pred ceEEeeCCCCchHHHHHHHHHhcC-CCC-----CC--------------cchhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 023075 171 LTVNDIKPDGHCLYRAVEDQLAHL-SGG-----EE--------------SAQSQVERFENYCKEVESTAAWGGELELRAL 230 (287)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~-~~~-----~~--------------fd~~~~~~f~eY~~~m~~~~~WGG~lEL~AL 230 (287)
+.+..||+|||||||||++||+++ +.. +. -+-+++++|++||.+|+++++|||++||+||
T Consensus 31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~~~~~~~~~~Y~~~m~~~~~WGg~iEL~Al 110 (185)
T 3phx_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110 (185)
T ss_dssp EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTHHHHCCCHHHHHHHHTSTTCCCBHHHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHhhhcCCCHHHHHHHhhCCCccCcHHHHHHH
Confidence 778889999999999999999986 332 21 1112357899999999999999999999999
Q ss_pred HHhhcccEEEEeCCCCc-----eEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075 231 THCLRKHIMIYSGSFPD-----VEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287 (287)
Q Consensus 231 S~~l~~~I~V~~~~~~~-----~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~ 287 (287)
|++|+++|.||+.+++. +.+|++. ..++|+|+|+. |+|||||+|+
T Consensus 111 s~~~~v~I~V~~~d~~~~~~~i~~f~~~~-------~~~~I~L~Y~g-----~~HYdsl~~~ 160 (185)
T 3phx_A 111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL 160 (185)
T ss_dssp HHHHCCCEEEEEC--CCBCCEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred HHHHCCcEEEEEecCCCCceEEEEcCCCC-------CCCEEEEEECC-----CcCchhceEC
Confidence 99999999999977654 4566543 26799999983 5999999874
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.94 E-value=1.1e-27 Score=214.73 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=85.7
Q ss_pred ceEEeeCCCCchHHHHHHHHHhcCC-CC-----CC--------c------chhhhHhHHHHHHHhhcCCccCcHHHHHHH
Q 023075 171 LTVNDIKPDGHCLYRAVEDQLAHLS-GG-----EE--------S------AQSQVERFENYCKEVESTAAWGGELELRAL 230 (287)
Q Consensus 171 L~i~~I~~DGnCLFrAIa~QL~~~~-~~-----~~--------f------d~~~~~~f~eY~~~m~~~~~WGG~lEL~AL 230 (287)
+.+..||+|||||||||++||+++. .. +. | +.+++++|++||.+|+++++|||++||+||
T Consensus 31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~~~~~~feeY~~~m~~~g~WGG~iEL~Al 110 (219)
T 3phu_A 31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110 (219)
T ss_dssp EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHHHHCCCHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhhhcCCCHHHHHHHhcCCCccCCHHHHHHH
Confidence 7788999999999999999998863 22 11 1 112356899999999999999999999999
Q ss_pred HHhhcccEEEEeCCCC-----ceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccccC
Q 023075 231 THCLRKHIMIYSGSFP-----DVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVIPI 287 (287)
Q Consensus 231 S~~l~~~I~V~~~~~~-----~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~p~ 287 (287)
|++|+++|+||+.+++ .+.||++. ..++|+|+|+. |+|||||+|+
T Consensus 111 S~~~~v~I~V~~~d~~g~~~~i~~fge~~-------~~~~I~L~Y~g-----~~HYdSL~~~ 160 (219)
T 3phu_A 111 AKEMGITIIIWTVAASDEVEAGIKFGDGD-------VFTAVNLLHSG-----QTHFDALRIL 160 (219)
T ss_dssp HHHTTCCEEEEEESSSSBEEEEEEESSCC-------TTTSEEEEEET-----TTEEEEEEEC
T ss_pred HHHhCCCEEEEEecCCCCceeEEEecCCC-------CCCeEEEEECC-----CcCchhheEC
Confidence 9999999999998766 34566543 26799999984 5999999974
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.84 E-value=1.6e-21 Score=176.31 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=60.1
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe-cCCcCCCCCCCCCCeEEEEeccCCC
Q 023075 200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM-GKEYSNGGSDSSGSSIILSYHRHAF 275 (287)
Q Consensus 200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~i-g~e~~~~~~~~~~~~i~L~Y~~h~y 275 (287)
|.+|+.+ +|++||. .|+.+++|||||||+|||++|++||.|++.+++...+ ...|.. +..+.|+|.|+
T Consensus 150 f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~----~~~~~I~LlY~---- 221 (234)
T 1tff_A 150 FRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE----AATPSVYLLYK---- 221 (234)
T ss_dssp HGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC----CSSCSEEEEEE----
T ss_pred HhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC----CCCCeEEEEEC----
Confidence 5666644 8999999 7999999999999999999999999999988865222 223432 34678999998
Q ss_pred CCCCcccccccC
Q 023075 276 GLGEHYNSVIPI 287 (287)
Q Consensus 276 ~LGeHYnSl~p~ 287 (287)
++|||+|+|.
T Consensus 222 --pgHYdily~~ 231 (234)
T 1tff_A 222 --TSHYNILYAA 231 (234)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCceecccC
Confidence 4699999984
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.82 E-value=1.1e-20 Score=170.74 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=60.6
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce--EecCCcCCCCCCCCCCeEEEEeccCC
Q 023075 200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV--EMGKEYSNGGSDSSGSSIILSYHRHA 274 (287)
Q Consensus 200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~--~ig~e~~~~~~~~~~~~i~L~Y~~h~ 274 (287)
|.+|+.+ +|++||. .|+.+++|||||||+|||++|++||.|++.+++.. ..+..|.. +..++|+|+|+.
T Consensus 153 f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~----~~~p~I~LlY~p-- 226 (234)
T 2zfy_A 153 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE----GSEPKVYLLYRP-- 226 (234)
T ss_dssp HGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST----TCCCSEEEEEET--
T ss_pred HhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC----CCCCeEEEEECC--
Confidence 5566543 8999998 69999999999999999999999999999876541 12234432 246789999985
Q ss_pred CCCCCccccccc
Q 023075 275 FGLGEHYNSVIP 286 (287)
Q Consensus 275 y~LGeHYnSl~p 286 (287)
+|||+|+|
T Consensus 227 ----gHYdiLy~ 234 (234)
T 2zfy_A 227 ----GHYDILYK 234 (234)
T ss_dssp ----TEEEEEEC
T ss_pred ----CCcccCCC
Confidence 59999998
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.70 E-value=1.1e-17 Score=154.90 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=60.3
Q ss_pred cchhhh--HhHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc-eEecC-C-cCCCCCCCCCCeEEEEeccC
Q 023075 200 SAQSQV--ERFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFPD-VEMGK-E-YSNGGSDSSGSSIILSYHRH 273 (287)
Q Consensus 200 fd~~~~--~~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~-~~ig~-e-~~~~~~~~~~~~i~L~Y~~h 273 (287)
|.+|+. .++++||. .|+.++.|||||+|+|||++|++||.|+..++.. ..+.. . |.. +.....+.|+|.|.
T Consensus 188 f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~-~~~~~~p~I~LLYr-- 264 (284)
T 4dhi_B 188 YAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS-DDQQIAPEITLLYR-- 264 (284)
T ss_dssp HGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC-CCSCCCCSEEEEEE--
T ss_pred HHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC-CCCCCCCEEEEeec--
Confidence 667764 37999999 8999999999999999999999999999876521 11111 1 311 11123478999998
Q ss_pred CCCCCCcccccccC
Q 023075 274 AFGLGEHYNSVIPI 287 (287)
Q Consensus 274 ~y~LGeHYnSl~p~ 287 (287)
+.|||-|+|.
T Consensus 265 ----pgHYDILY~~ 274 (284)
T 4dhi_B 265 ----PGHYDVIYKK 274 (284)
T ss_dssp ----TTEEEEEEEC
T ss_pred ----CCCccccccC
Confidence 5799999973
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.67 E-value=5.6e-17 Score=156.59 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=59.1
Q ss_pred cchhhhH--hHHHHHH-HhhcCCccCcHHHHHHHHHhhcccEEEEeCCCC-ceEecC-CcCCCCCCCCCCeEEEEeccCC
Q 023075 200 SAQSQVE--RFENYCK-EVESTAAWGGELELRALTHCLRKHIMIYSGSFP-DVEMGK-EYSNGGSDSSGSSIILSYHRHA 274 (287)
Q Consensus 200 fd~~~~~--~f~eY~~-~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~-~~~ig~-e~~~~~~~~~~~~i~L~Y~~h~ 274 (287)
|.+|+.+ ++++||. .|..+++|||||+|+|||++|+++|.|+..++. ...+.. .|. .+..+.|+|.|..
T Consensus 318 f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~----~~~~~~I~LLYrP-- 391 (399)
T 4ddg_A 318 FEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP----EGSEPKVYLLYRP-- 391 (399)
T ss_dssp HGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT----TTCCCCCEEEEET--
T ss_pred HhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC----CCCCCEEEEEEcC--
Confidence 4555543 7999999 899999999999999999999999999976652 211221 121 1246789999986
Q ss_pred CCCCCccccccc
Q 023075 275 FGLGEHYNSVIP 286 (287)
Q Consensus 275 y~LGeHYnSl~p 286 (287)
.|||.|+|
T Consensus 392 ----gHYDiLY~ 399 (399)
T 4ddg_A 392 ----GHYDILYK 399 (399)
T ss_dssp ----BEEEEEEC
T ss_pred ----CccccCCC
Confidence 49999987
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=98.38 E-value=5.9e-07 Score=85.10 Aligned_cols=113 Identities=18% Similarity=0.321 Sum_probs=70.9
Q ss_pred CCceEEeeCCCCchHHHHHHHHHhcCCCCCC-----------------c-----------chh-------h----hHhHH
Q 023075 169 LGLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-----------------S-----------AQS-------Q----VERFE 209 (287)
Q Consensus 169 ~gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-----------------f-----------d~~-------~----~~~f~ 209 (287)
..|......||||||.+|++..+++.++... | ..| + ..+|+
T Consensus 110 ~rL~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~ 189 (390)
T 3dkb_A 110 RKLVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWD 189 (390)
T ss_dssp CCEEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHH
T ss_pred cceEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHH
Confidence 3477788999999999999999999776531 0 001 1 13444
Q ss_pred HHHHHhhcCCc-------c--CcHHHHHHHHHhhcccEEEEeCC-------CC---ceEecCCcCC---CCCCCCCCeEE
Q 023075 210 NYCKEVESTAA-------W--GGELELRALTHCLRKHIMIYSGS-------FP---DVEMGKEYSN---GGSDSSGSSII 267 (287)
Q Consensus 210 eY~~~m~~~~~-------W--GG~lEL~ALS~~l~~~I~V~~~~-------~~---~~~ig~e~~~---~~~~~~~~~i~ 267 (287)
.-+...+.+.. + =-++-+.+||++|++||+||... |. ++.||.=|.. ++......||.
T Consensus 190 ~Iv~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~ 269 (390)
T 3dkb_A 190 NLIKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIV 269 (390)
T ss_dssp HHHHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEE
T ss_pred HHHHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceE
Confidence 43433332211 1 12678999999999999999532 11 1223321221 12345567999
Q ss_pred EEeccCCCCCCCcccccccC
Q 023075 268 LSYHRHAFGLGEHYNSVIPI 287 (287)
Q Consensus 268 L~Y~~h~y~LGeHYnSl~p~ 287 (287)
|+|.+ .||.+|+++
T Consensus 270 LgY~s------~HFsaLV~m 283 (390)
T 3dkb_A 270 LGYDS------HHFVPLVTL 283 (390)
T ss_dssp EEECS------SCEEEEEEB
T ss_pred EEecc------Cceeeeeec
Confidence 99996 699999863
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=98.14 E-value=6.2e-06 Score=79.39 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=74.2
Q ss_pred CceEEeeCCCCchHHHHHHHHHhcCCCCCC-------------------------------c-chhh--h----HhHHHH
Q 023075 170 GLTVNDIKPDGHCLYRAVEDQLAHLSGGEE-------------------------------S-AQSQ--V----ERFENY 211 (287)
Q Consensus 170 gL~i~~I~~DGnCLFrAIa~QL~~~~~~~~-------------------------------f-d~~~--~----~~f~eY 211 (287)
.|......||||||-+|++-.+++.+.... | -.|+ + .+|+.-
T Consensus 188 rL~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~i 267 (454)
T 3zrh_A 188 RLYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFI 267 (454)
T ss_dssp CEEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHH
T ss_pred ceeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHH
Confidence 367778999999999999999999776421 1 0111 2 345555
Q ss_pred HHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCC---------CceEecCCcC---CCCCCCCCCeEEEEeccCCCCCCC
Q 023075 212 CKEVESTAAWGGELELRALTHCLRKHIMIYSGSF---------PDVEMGKEYS---NGGSDSSGSSIILSYHRHAFGLGE 279 (287)
Q Consensus 212 ~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~---------~~~~ig~e~~---~~~~~~~~~~i~L~Y~~h~y~LGe 279 (287)
+...+.++.==-+|-+.+||++|++||+||.... +++.||.=|. -++......||.|+|.+ .
T Consensus 268 v~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~------g 341 (454)
T 3zrh_A 268 LSLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR------G 341 (454)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET------T
T ss_pred HHHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc------c
Confidence 5555566554456779999999999999997532 1122332121 11123456899999997 5
Q ss_pred ccccccc
Q 023075 280 HYNSVIP 286 (287)
Q Consensus 280 HYnSl~p 286 (287)
||.+|++
T Consensus 342 HFsaLV~ 348 (454)
T 3zrh_A 342 HFSALVA 348 (454)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9999886
No 11
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.29 E-value=49 Score=27.91 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=38.6
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHHHHhhh------ccCChhHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023075 24 QETRDEMLSRHRKEISQLQNKETELKKAA------AKGSKAEQKAKKKQVEEEISRLSAKLREKHA 83 (287)
Q Consensus 24 ~~~~e~l~~RHrkE~keLq~~i~~~Kk~a------~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~ 83 (287)
...+.+|.+.++.+..+|..++..++... ++.|. .+=+.+.+|+..|..+|...+.
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~De----akI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDT----AKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 33456688888888888776655544433 34554 5667889999999988876554
No 12
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=45.07 E-value=95 Score=24.59 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=37.4
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKH 82 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh 82 (287)
..++.++-.=++|.-.|++.+..++--+- .-=-++...|..||++|.+..
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l~~E~q--------~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENMKTESQ--------RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888888888888875554 344578888888888888764
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=42.24 E-value=55 Score=24.74 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=32.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 023075 27 RDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (287)
Q Consensus 27 ~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~ 79 (287)
...+...+..++.+|+.+|..++.... .+..++..|+.++.
T Consensus 62 ~~~~i~~~~~~l~~l~~~i~~l~~~i~------------~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 62 REELLSKYHLDLNNSKNTLAKLIDRKS------------ELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 356888999999999999988886554 66777777777776
No 14
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.55 E-value=80 Score=20.83 Aligned_cols=36 Identities=33% Similarity=0.549 Sum_probs=23.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 023075 31 LSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 31 ~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el 78 (287)
++|-+|.--.|...-|.+.|... .+.++|++||.|.
T Consensus 12 iarlkkdnlqlerdeqnlekiia------------nlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIA------------NLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHH------------HHHHHHHHHHHHH
Confidence 45555555555556666666655 6778888888775
No 15
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.57 E-value=74 Score=25.35 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 023075 35 RKEISQLQNKETELK 49 (287)
Q Consensus 35 rkE~keLq~~i~~~K 49 (287)
.+..++|++.|+.|+
T Consensus 70 q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 70 QKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.27 E-value=30 Score=20.03 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023075 35 RKEISQLQNKETELKKA 51 (287)
Q Consensus 35 rkE~keLq~~i~~~Kk~ 51 (287)
-||+.|||.++..++|.
T Consensus 7 ykeledlqerlrklrkk 23 (27)
T 3twe_A 7 YKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47889999988777653
No 17
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=35.47 E-value=1.2e+02 Score=27.14 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023075 28 DEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREKHAKELASLG 90 (287)
Q Consensus 28 e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~rh~~EL~~l~ 90 (287)
.+|..+|.+|.-+|...- -. .+.+.++.-+...|..|..=+.+.|..+|..|.
T Consensus 77 ~el~~~q~~el~~l~~~q---~~-------eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk 129 (251)
T 1jad_A 77 VELKERLEMELIHLGEEY---HD-------GIRRRKEQHATEQTAKITELAREKQIAELKALK 129 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655421 00 122456677777788888888888888877775
No 18
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=34.16 E-value=57 Score=25.92 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=25.5
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCce
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDV 248 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~ 248 (287)
.++|++|+..|.- ...++.++..+...++|-+. +..+
T Consensus 13 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~-Gd~~ 49 (132)
T 1mdc_A 13 QENFDGFLKSAGL------SDDKIQALVSDKPTQKMEAN-GDSY 49 (132)
T ss_dssp EESHHHHHHTTTC------CHHHHHHHHHCCCEEEEEEE-TTEE
T ss_pred ccCHHHHHHHhCC------CHHHHhhhccCCceEEEEEe-CCEE
Confidence 3689999998843 46788999888755555444 4434
No 19
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.35 E-value=72 Score=24.83 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=29.7
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHHHH
Q 023075 25 ETRDEMLSRHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLREK 81 (287)
Q Consensus 25 ~~~e~l~~RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~~r 81 (287)
+.+++.++.=++|.++....+..+|+... .+..+++.|...|++|
T Consensus 40 Ee~eE~~aql~Re~~eK~re~e~~Kr~~~------------~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 40 LELEEQLAESRRQYEEKNKEFEREKHAHS------------ILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Confidence 34566666666777776666666666555 5667777777777665
No 20
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=31.28 E-value=14 Score=23.51 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 023075 38 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 38 ~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el 78 (287)
...|+.||++|...+- .+.+++..++.+|
T Consensus 6 i~avKkKiq~lq~q~d------------~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNY------------HLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTT------------TTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence 4567778888876544 4556666666554
No 21
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=30.69 E-value=80 Score=23.00 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHH
Q 023075 36 KEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAK 77 (287)
Q Consensus 36 kE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~e 77 (287)
-|++++-.||..|+ ..|+-|.+.+|.+|.+
T Consensus 21 sEI~EID~Ki~nL~------------~mR~ivldRlA~lEqd 50 (72)
T 2xu6_A 21 SEIRDIEVEVENLR------------QKKEKLLGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhh
Confidence 58899999999986 5688899999998864
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.53 E-value=1.2e+02 Score=20.93 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 023075 33 RHRKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (287)
Q Consensus 33 RHrkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~ 79 (287)
+.+.+..+|+.++..|+. ...++..+|+.|+.|+.
T Consensus 20 KKk~~~~~le~~~~~L~~------------~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEK------------KNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Confidence 344566677777777753 33477788888877754
No 23
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.32 E-value=61 Score=24.34 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 023075 67 VEEEISRLSAKLREKHAKELASLG 90 (287)
Q Consensus 67 v~~e~~~le~el~~rh~~EL~~l~ 90 (287)
-.++|.+||.++ +||+.-|..|.
T Consensus 56 h~~ei~~le~~i-~rhk~~i~~l~ 78 (84)
T 1gmj_A 56 HAKEIERLQKEI-ERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhh
Confidence 345677777777 66777777765
No 24
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=29.06 E-value=1e+02 Score=24.34 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=26.0
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCc
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPD 247 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~ 247 (287)
.++|++|+..|.- ...++.++..+...++|-+.++..
T Consensus 14 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~~Gd~ 50 (133)
T 1ftp_A 14 QTNFEEYMKAIGV------GAIERKAGLALSPVIELEILDGDK 50 (133)
T ss_dssp EESHHHHHHHTTC------CHHHHHHHTTCCCEEEEEECSSSE
T ss_pred ccCHHHHHHHhCC------CHHHHHHhhcCCceEEEEEcCCCE
Confidence 3689999998843 468889998887666665524443
No 25
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=28.01 E-value=3.1e+02 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 023075 27 RDEMLSRHRKEISQLQNKE 45 (287)
Q Consensus 27 ~e~l~~RHrkE~keLq~~i 45 (287)
+-.|..+|-+|.|||+.+.
T Consensus 125 mK~Lk~~~ErE~KELkk~q 143 (251)
T 1jad_A 125 LKALKESSESNIKDIKKKL 143 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456778888888887543
No 26
>1lpj_A Retinol-binding protein IV, cellular; cellular retinol-binding protein, CRBP, vitamin A, ILBPS, transport protein; 2.00A {Homo sapiens} SCOP: b.60.1.2
Probab=26.48 E-value=84 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=24.1
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+...++|-+.+
T Consensus 13 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 46 (133)
T 1lpj_A 13 SDNFEGYMLALGI------DFATRKIAKLLKPQKVIEQNG 46 (133)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHTTCCCEEEEEEET
T ss_pred CcCHHHHHHHhCC------CHHHHHHHHhCCCeEEEEEcC
Confidence 3789999999843 367888888887555554443
No 27
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=26.01 E-value=1.1e+02 Score=24.19 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=24.0
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++-++..++..++|-+.+
T Consensus 13 seNfdeymkalGv------~~~~rk~~~~~kp~~~I~~~G 46 (133)
T 3ppt_A 13 SENFDDYMKAVGV------GMVMRKMANAATPTQEIKIDG 46 (133)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHHHCCCEEEEEEET
T ss_pred ccCHHHHHHHhCC------CHHHHhhhhcCCcEEEEEECC
Confidence 3789999998843 357888888887555555443
No 28
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=25.54 E-value=92 Score=24.73 Aligned_cols=34 Identities=6% Similarity=0.148 Sum_probs=24.3
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+...++|-+.+
T Consensus 15 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 48 (135)
T 1vyf_A 15 SHNFDAVMSKLGV------SWATRQIGNTVTPTVTFTMDG 48 (135)
T ss_dssp EESHHHHHHHTTC------CHHHHHHHTTCCCEEEEEEET
T ss_pred CcCHHHHHHHcCC------CHHHHHhhccCCceEEEEEcC
Confidence 3789999999843 467888888887555554443
No 29
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=25.25 E-value=62 Score=31.59 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=44.4
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHHhcccCC--ch--hHHHHHHHHhc-cCCceEEeeCCCCchHHHHHHHHH
Q 023075 120 QAKPSKGTKRREKRAQQEAAREQRIQEEQSNIVSD--RT--VEDEKLEKKLG-PLGLTVNDIKPDGHCLYRAVEDQL 191 (287)
Q Consensus 120 ~~~~sKa~~Rr~kr~a~~~~r~~~i~~e~~~~~~~--r~--~E~~~l~~~L~-~~gL~i~~I~~DGnCLFrAIa~QL 191 (287)
..+.||=.++..+|.++-.++++++.+..+..... +. .+...+...|. .+.+...-+-=|-+|||.||....
T Consensus 32 ~s~gs~f~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~r~~~r~I~hiDmDaFYAsvE~~~ 108 (517)
T 3pzp_A 32 ATKGSRFYGNELKKEKQVNQRIENMMQQKAQITSQQLRKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRD 108 (517)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESSHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhccCcCcEEEEEecCcHHHHHHHHh
Confidence 34667777777777777778888887665555332 11 22233333343 255555555568999999998543
No 30
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=24.32 E-value=1.3e+02 Score=23.80 Aligned_cols=32 Identities=9% Similarity=0.328 Sum_probs=23.9
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEe
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYS 242 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~ 242 (287)
.++|++|+..|.- ...++.++..+...++|-+
T Consensus 14 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~ 45 (134)
T 1o8v_A 14 SEGFDKIMERLGV------DFVTRKMGNLVKPNLIVTD 45 (134)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHHHCCCEEEEEE
T ss_pred CcCHHHHHHHcCC------CHHHHHHhhcCCceEEEEE
Confidence 3789999999843 4678888988875555555
No 31
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=24.04 E-value=1.1e+02 Score=24.60 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=24.5
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+...++|-+.+
T Consensus 17 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 50 (141)
T 2rcq_A 17 NENFEGYMKALDI------DFATRKIAVRLTQTKVIDQDG 50 (141)
T ss_dssp EESHHHHHHHTTC------CHHHHHHHTTCCCEEEEEEET
T ss_pred ccCHHHHHHHhCC------CHHHHHHhhcCCcEEEEEEeC
Confidence 4789999999843 367888888887555555443
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=23.94 E-value=2.4e+02 Score=21.52 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHHH
Q 023075 35 RKEISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKLR 79 (287)
Q Consensus 35 rkE~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el~ 79 (287)
..++++....++.|..... +.+..|..+..+..+++.||+
T Consensus 18 e~~~~~~~~e~~~L~~~l~-----eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 18 KRELSDRDDEVKRLREDIA-----KENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444 123455555555555555554
No 33
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.92 E-value=59 Score=24.42 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhccCChhHHHhhhHHHHHHHHHHHHHH
Q 023075 38 ISQLQNKETELKKAAAKGSKAEQKAKKKQVEEEISRLSAKL 78 (287)
Q Consensus 38 ~keLq~~i~~~Kk~a~k~~k~~~Kk~rK~v~~e~~~le~el 78 (287)
+..|+++|..|+- .+.++..+|+.++++|
T Consensus 3 ~~~L~~~i~~L~~------------q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 3 KSQLESRVHLLEQ------------QKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHh
Confidence 4567777777763 3447777777777644
No 34
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=23.83 E-value=2.7e+02 Score=23.22 Aligned_cols=90 Identities=21% Similarity=0.212 Sum_probs=53.2
Q ss_pred EeeCCCCchHHHHHHHHHhcCCCCCCcchhhhHh-HHHHHHHhhcC-------CccCc-HHHHHHHHHhhcccEEEEeCC
Q 023075 174 NDIKPDGHCLYRAVEDQLAHLSGGEESAQSQVER-FENYCKEVEST-------AAWGG-ELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 174 ~~I~~DGnCLFrAIa~QL~~~~~~~~fd~~~~~~-f~eY~~~m~~~-------~~WGG-~lEL~ALS~~l~~~I~V~~~~ 244 (287)
..+|. -+||--||+.|+.... ++ |..-|..+=++ ...|= -=.|.|||..|+....|....
T Consensus 57 ~P~P~-~~CLL~Ais~at~~s~----------~~LW~~Lc~~lPDSlL~n~ei~~~GLSTDhltaLa~~~~~~c~~hs~~ 125 (160)
T 4a5u_A 57 LPQPT-LNCLLSAVSDQTKVSE----------EHLWESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDR 125 (160)
T ss_dssp CCCCS-SCHHHHHHHHHHCCCH----------HHHHHHHTTTSCGGGTSSHHHHHHCCCHHHHHHHHHHHTEEEEEEETT
T ss_pred CCCcc-hhhhHHHHhhccCCCH----------HHHHHHHHHhCchhhcCchhhhhcCCcHHHHHHHHHHHheEEEEEcCC
Confidence 34564 8999999998885421 11 11111111110 11221 124779999999999888766
Q ss_pred CCceEecCCcCCCCCCCCCCeEEEEeccCCCCCCCcccccc
Q 023075 245 FPDVEMGKEYSNGGSDSSGSSIILSYHRHAFGLGEHYNSVI 285 (287)
Q Consensus 245 ~~~~~ig~e~~~~~~~~~~~~i~L~Y~~h~y~LGeHYnSl~ 285 (287)
+ .+.+|-.- ....+.|.|.. |--.||....
T Consensus 126 ~-~~~~Gi~~-------as~~~~I~ht~---G~P~HFs~~~ 155 (160)
T 4a5u_A 126 G-PILFGPSD-------TIKRIDITHTT---GPPSHFSPGK 155 (160)
T ss_dssp E-EEEESCSS-------CSEEEEEEEEC---SSSCEEEESC
T ss_pred c-eEEeecCC-------CceEEEEEeCC---CCCCCccCCc
Confidence 5 45688532 25578888765 4457886543
No 35
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=23.77 E-value=1.4e+02 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.7
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+.-.++|-+.+
T Consensus 16 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 49 (135)
T 1b56_A 16 SKGFDEYMKELGV------GIALRKMGAMAKPDCIITCDG 49 (135)
T ss_dssp CCSHHHHHHHHTC------CHHHHHHHHHCCCEEEEEEET
T ss_pred ccCHHHHHHHcCC------CHHHHHHhhcCCcEEEEEEcC
Confidence 3789999999843 467888888886666555543
No 36
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=23.71 E-value=2.2e+02 Score=21.25 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=13.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhc
Q 023075 31 LSRHRKEISQLQNKETELKKAAA 53 (287)
Q Consensus 31 ~~RHrkE~keLq~~i~~~Kk~a~ 53 (287)
+..|++|+++|+..|...|+.+.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~ 75 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666655444
No 37
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=22.94 E-value=97 Score=24.32 Aligned_cols=39 Identities=5% Similarity=0.029 Sum_probs=25.7
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCCCCceEe
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGSFPDVEM 250 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~~~~~~i 250 (287)
.++|++|+..|. =...++.++..++..++|-+ ++..+.|
T Consensus 11 seNfdeymkalG------v~~~~rk~a~~~kp~~ei~~-~Gd~~~i 49 (127)
T 1eal_A 11 EKNYDEFMKRLA------LPSDAIDKARNLKIISEVKQ-DGQNFTW 49 (127)
T ss_dssp ESCTTHHHHHHT------CCHHHHHHHTTCCEEEEEEE-SSSEEEE
T ss_pred ccCHHHHHHHhC------CCHHHHHhhhcCCcEEEEEE-cCCEEEE
Confidence 368999999884 34678888888864444444 4444433
No 38
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=22.88 E-value=1.1e+02 Score=23.89 Aligned_cols=34 Identities=15% Similarity=0.252 Sum_probs=24.0
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..++..++|-+.+
T Consensus 11 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 44 (125)
T 1mvg_A 11 QENYEEFLKALAL------PEDLIKMARDIKPIVEIQQKG 44 (125)
T ss_dssp EESHHHHHHHSSS------CHHHHHHHHTCCCEEEEEEET
T ss_pred ccCHHHHHHHcCC------CHHHHHhhccCCcEEEEEEeC
Confidence 3689999999843 367888888886555554443
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.84 E-value=1.2e+02 Score=21.09 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 023075 66 QVEEEISRLSAKLR 79 (287)
Q Consensus 66 ~v~~e~~~le~el~ 79 (287)
.+..+++.|..+|.
T Consensus 48 ~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 48 HLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555544443
No 40
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=22.15 E-value=1.1e+02 Score=23.81 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=23.9
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+...++|-+.+
T Consensus 11 seNfdeymkalGv------~~~~rk~a~~~kp~~ei~~~G 44 (125)
T 1p6p_A 11 QENYENFLRTVGL------PEDIIKVAKDVNPVIEIEQNG 44 (125)
T ss_dssp EESHHHHHHHHTC------CHHHHHHHTTCCCEEEEEECS
T ss_pred ccCHHHHHHHhCC------CHHHHHhhccCCcEEEEEEcC
Confidence 3689999999854 367788888886555444443
No 41
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=21.88 E-value=2e+02 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023075 64 KKQVEEEISRLSAKLRE 80 (287)
Q Consensus 64 rK~v~~e~~~le~el~~ 80 (287)
-..+..++.+||.+|+.
T Consensus 119 ~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 119 INKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555666555543
No 42
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=21.65 E-value=14 Score=22.87 Aligned_cols=17 Identities=53% Similarity=0.905 Sum_probs=13.6
Q ss_pred cCCceEEeeCCCCchHH
Q 023075 168 PLGLTVNDIKPDGHCLY 184 (287)
Q Consensus 168 ~~gL~i~~I~~DGnCLF 184 (287)
-+||.-.+=.|||.|.|
T Consensus 20 glgltcipgnpdgtcyy 36 (37)
T 3q8j_A 20 GLGLTCIPGNPDGTCYY 36 (37)
T ss_dssp TSCEEEEECSSEEEEEE
T ss_pred CCCcEecCCCCCceEEe
Confidence 46788888888999975
No 43
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=20.33 E-value=1.4e+02 Score=23.52 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=24.7
Q ss_pred hHhHHHHHHHhhcCCccCcHHHHHHHHHhhcccEEEEeCC
Q 023075 205 VERFENYCKEVESTAAWGGELELRALTHCLRKHIMIYSGS 244 (287)
Q Consensus 205 ~~~f~eY~~~m~~~~~WGG~lEL~ALS~~l~~~I~V~~~~ 244 (287)
.++|++|+..|.- ...++.++..+.-.++|-+.+
T Consensus 13 seNfdeylkalGv------~~~~rk~a~~~kp~~ei~~~G 46 (134)
T 1crb_A 13 NENFEEYLRALDV------NVALRKIANLLKPDKEIVQDG 46 (134)
T ss_dssp EESHHHHHHTTTC------CHHHHHHHHHCCCEEEEEEET
T ss_pred CcCHHHHHHHcCC------CHHHHHHhhcCCceEEEEEcC
Confidence 3789999998843 467888888887666555543
Done!