Query 023076
Match_columns 287
No_of_seqs 264 out of 1404
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:16:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2.9E-49 6.3E-54 363.7 22.0 199 81-286 3-211 (316)
2 COG0656 ARA1 Aldo/keto reducta 100.0 4.8E-48 1E-52 345.5 18.0 184 87-286 10-195 (280)
3 KOG1575 Voltage-gated shaker-l 100.0 2.3E-47 4.9E-52 347.3 20.6 204 77-286 10-222 (336)
4 TIGR01293 Kv_beta voltage-depe 100.0 3.6E-45 7.9E-50 337.3 20.8 198 81-286 1-211 (317)
5 PLN02587 L-galactose dehydroge 100.0 1.6E-44 3.5E-49 332.5 21.3 200 81-286 1-210 (314)
6 KOG1577 Aldo/keto reductase fa 100.0 1.3E-44 2.8E-49 323.8 18.3 189 86-287 10-214 (300)
7 PRK09912 L-glyceraldehyde 3-ph 100.0 3.1E-44 6.8E-49 334.8 21.7 198 81-286 15-228 (346)
8 PRK10625 tas putative aldo-ket 100.0 8.1E-44 1.8E-48 332.0 22.4 197 81-286 3-239 (346)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 9E-44 2E-48 322.3 22.0 198 81-286 1-204 (285)
10 PRK14863 bifunctional regulato 100.0 2.4E-43 5.2E-48 321.6 18.2 187 88-286 2-197 (292)
11 PRK11172 dkgB 2,5-diketo-D-glu 100.0 8.5E-43 1.8E-47 314.3 20.5 180 90-286 2-184 (267)
12 PRK10376 putative oxidoreducta 100.0 1.7E-41 3.7E-46 309.2 22.5 198 77-286 5-218 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3E-41 6.5E-46 305.5 18.9 182 86-286 10-192 (275)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.5E-41 9.7E-46 304.3 16.0 188 93-287 1-194 (283)
15 COG4989 Predicted oxidoreducta 100.0 6.2E-39 1.3E-43 277.2 12.9 198 81-286 3-214 (298)
16 COG1453 Predicted oxidoreducta 100.0 7.9E-37 1.7E-41 277.1 17.1 199 80-287 2-209 (391)
17 KOG1576 Predicted oxidoreducta 100.0 1.2E-34 2.5E-39 252.5 15.0 199 80-286 23-235 (342)
18 KOG3023 Glutamate-cysteine lig 98.0 1.4E-05 3.1E-10 69.7 7.0 72 209-281 155-227 (285)
19 PRK00208 thiG thiazole synthas 93.9 4.1 9E-05 36.3 15.1 111 168-281 68-182 (250)
20 cd04728 ThiG Thiazole synthase 91.7 9.4 0.0002 34.0 16.4 111 168-281 68-182 (248)
21 cd03319 L-Ala-DL-Glu_epimerase 90.4 7.7 0.00017 35.6 13.1 150 109-281 134-286 (316)
22 cd03174 DRE_TIM_metallolyase D 89.5 2.2 4.8E-05 37.7 8.6 105 172-280 15-134 (265)
23 PF07021 MetW: Methionine bios 88.9 2.3 5.1E-05 36.5 7.8 102 182-286 64-171 (193)
24 TIGR01228 hutU urocanate hydra 87.7 1.3 2.9E-05 43.0 6.1 129 117-258 109-262 (545)
25 PRK05414 urocanate hydratase; 87.5 1.4 3.1E-05 43.0 6.2 129 117-258 118-271 (556)
26 PF05690 ThiG: Thiazole biosyn 86.3 17 0.00036 32.4 11.6 109 170-281 70-182 (247)
27 PRK05692 hydroxymethylglutaryl 85.5 8.8 0.00019 35.0 10.1 103 173-278 23-137 (287)
28 PRK08609 hypothetical protein; 85.4 27 0.00057 35.2 14.2 150 113-278 351-522 (570)
29 PRK08392 hypothetical protein; 84.5 26 0.00056 30.3 13.9 148 112-279 15-179 (215)
30 COG2987 HutU Urocanate hydrata 82.2 3.1 6.7E-05 40.1 5.7 58 186-251 204-261 (561)
31 cd03316 MR_like Mandelate race 82.0 43 0.00094 31.1 15.4 151 109-281 139-298 (357)
32 PRK14017 galactonate dehydrata 81.3 49 0.0011 31.2 14.4 151 109-282 124-287 (382)
33 COG1140 NarY Nitrate reductase 80.9 0.72 1.6E-05 43.4 1.0 55 222-276 263-317 (513)
34 PRK06740 histidinol-phosphatas 80.6 49 0.0011 30.8 14.4 98 181-279 157-289 (331)
35 PF01175 Urocanase: Urocanase; 79.8 4.8 0.0001 39.4 6.2 130 116-258 107-261 (546)
36 cd03322 rpsA The starvation se 79.2 56 0.0012 30.6 14.4 145 109-281 126-272 (361)
37 cd00308 enolase_like Enolase-s 77.9 27 0.00059 30.3 10.1 85 194-284 120-206 (229)
38 cd07943 DRE_TIM_HOA 4-hydroxy- 77.7 28 0.00061 31.1 10.3 102 172-279 18-130 (263)
39 cd07948 DRE_TIM_HCS Saccharomy 75.1 37 0.00079 30.5 10.3 101 172-280 18-131 (262)
40 cd03315 MLE_like Muconate lact 74.6 62 0.0013 28.7 15.6 152 109-283 85-240 (265)
41 cd07944 DRE_TIM_HOA_like 4-hyd 74.2 41 0.00089 30.2 10.4 104 172-279 16-127 (266)
42 cd00423 Pterin_binding Pterin 74.0 49 0.0011 29.5 10.9 103 173-282 21-128 (258)
43 TIGR01502 B_methylAsp_ase meth 73.4 67 0.0015 30.9 12.1 107 172-283 244-357 (408)
44 cd06543 GH18_PF-ChiA-like PF-C 73.3 75 0.0016 29.1 13.5 181 94-287 72-266 (294)
45 PRK07945 hypothetical protein; 72.6 83 0.0018 29.3 15.7 153 111-279 111-289 (335)
46 PRK13753 dihydropteroate synth 70.7 85 0.0018 28.6 11.6 101 173-282 22-127 (279)
47 PRK14461 ribosomal RNA large s 70.6 57 0.0012 31.0 10.7 88 197-285 232-352 (371)
48 PRK07328 histidinol-phosphatas 70.3 73 0.0016 28.4 11.1 100 179-279 94-226 (269)
49 cd07939 DRE_TIM_NifV Streptomy 69.3 74 0.0016 28.3 10.9 99 172-278 16-127 (259)
50 PRK13796 GTPase YqeH; Provisio 68.9 1E+02 0.0023 29.0 12.4 138 93-242 35-180 (365)
51 COG1748 LYS9 Saccharopine dehy 67.7 29 0.00062 33.2 8.2 81 111-205 79-159 (389)
52 PRK06015 keto-hydroxyglutarate 67.6 22 0.00048 30.8 6.8 88 174-279 14-102 (201)
53 PRK00164 moaA molybdenum cofac 67.1 1E+02 0.0022 28.2 15.9 155 107-278 48-227 (331)
54 TIGR01278 DPOR_BchB light-inde 67.1 62 0.0014 32.0 10.8 110 175-284 97-243 (511)
55 TIGR01182 eda Entner-Doudoroff 66.9 26 0.00057 30.3 7.2 88 174-279 18-106 (204)
56 PLN02746 hydroxymethylglutaryl 66.0 53 0.0012 30.9 9.5 97 178-278 69-179 (347)
57 COG0635 HemN Coproporphyrinoge 65.6 53 0.0011 31.7 9.7 62 172-235 200-276 (416)
58 PRK02399 hypothetical protein; 64.4 26 0.00056 33.6 7.1 72 181-259 200-290 (406)
59 TIGR00735 hisF imidazoleglycer 64.2 1E+02 0.0023 27.2 14.2 87 185-277 163-253 (254)
60 CHL00076 chlB photochlorophyll 64.0 1.3E+02 0.0028 29.8 12.3 91 194-284 117-248 (513)
61 PRK13361 molybdenum cofactor b 63.1 1.3E+02 0.0027 27.8 13.7 134 107-258 44-194 (329)
62 PRK15072 bifunctional D-altron 63.1 64 0.0014 30.8 9.8 83 194-282 232-316 (404)
63 TIGR01496 DHPS dihydropteroate 62.9 1.1E+02 0.0025 27.2 11.8 100 173-281 20-125 (257)
64 TIGR03217 4OH_2_O_val_ald 4-hy 62.8 1.2E+02 0.0027 28.2 11.3 25 172-197 20-44 (333)
65 PRK04452 acetyl-CoA decarbonyl 62.7 77 0.0017 29.5 9.8 93 186-283 85-184 (319)
66 PRK05588 histidinol-phosphatas 62.5 1.1E+02 0.0024 27.0 14.2 154 111-280 16-215 (255)
67 TIGR00190 thiC thiamine biosyn 62.3 1.5E+02 0.0033 28.5 13.6 107 108-234 74-184 (423)
68 PRK09248 putative hydrolase; V 62.2 1.1E+02 0.0024 26.8 14.5 85 191-279 94-190 (246)
69 cd04740 DHOD_1B_like Dihydroor 62.1 1.2E+02 0.0026 27.3 14.3 153 109-275 100-286 (296)
70 PF00809 Pterin_bind: Pterin b 61.9 18 0.0004 31.2 5.3 90 187-283 29-125 (210)
71 cd03325 D-galactonate_dehydrat 61.9 53 0.0011 30.6 8.8 151 109-281 123-285 (352)
72 cd03318 MLE Muconate Lactonizi 61.8 58 0.0012 30.5 9.1 80 195-280 215-296 (365)
73 TIGR02534 mucon_cyclo muconate 61.4 30 0.00065 32.5 7.1 82 194-281 213-296 (368)
74 cd03314 MAL Methylaspartate am 60.8 1.5E+02 0.0033 28.0 11.9 103 174-281 210-319 (369)
75 cd06543 GH18_PF-ChiA-like PF-C 60.3 1.4E+02 0.003 27.4 11.0 85 172-257 86-181 (294)
76 PF00682 HMGL-like: HMGL-like 60.3 87 0.0019 27.1 9.5 98 173-277 11-124 (237)
77 cd00739 DHPS DHPS subgroup of 60.3 1.3E+02 0.0028 27.0 12.5 102 173-281 21-127 (257)
78 PF03102 NeuB: NeuB family; I 59.3 56 0.0012 29.1 8.0 115 108-238 53-185 (241)
79 PF01081 Aldolase: KDPG and KH 58.8 35 0.00075 29.4 6.4 88 174-279 18-106 (196)
80 PRK08195 4-hyroxy-2-oxovalerat 58.5 95 0.0021 29.0 9.8 103 171-279 20-133 (337)
81 TIGR02026 BchE magnesium-proto 58.4 1.2E+02 0.0027 29.7 11.1 65 209-275 322-392 (497)
82 cd00740 MeTr MeTr subgroup of 58.2 1.4E+02 0.003 26.7 11.7 103 173-282 23-127 (252)
83 PRK06552 keto-hydroxyglutarate 58.1 40 0.00087 29.3 6.8 88 174-279 23-114 (213)
84 PLN02428 lipoic acid synthase 58.1 1.7E+02 0.0036 27.6 16.2 161 108-286 130-326 (349)
85 PRK00730 rnpA ribonuclease P; 57.9 67 0.0015 26.1 7.5 62 157-222 47-110 (138)
86 TIGR01928 menC_lowGC/arch o-su 57.9 47 0.001 30.6 7.7 150 109-283 132-283 (324)
87 PRK11840 bifunctional sulfur c 57.4 1.7E+02 0.0036 27.4 14.5 111 169-282 143-257 (326)
88 TIGR02660 nifV_homocitr homoci 57.4 1.3E+02 0.0028 28.3 10.6 99 172-278 19-130 (365)
89 PRK01222 N-(5'-phosphoribosyl) 57.3 74 0.0016 27.5 8.3 66 187-256 20-86 (210)
90 cd01948 EAL EAL domain. This d 57.1 76 0.0016 26.9 8.5 101 176-280 98-208 (240)
91 PRK00077 eno enolase; Provisio 55.8 1.6E+02 0.0036 28.3 11.2 96 173-279 261-361 (425)
92 PRK04390 rnpA ribonuclease P; 55.7 89 0.0019 24.5 7.8 64 157-222 45-110 (120)
93 COG4464 CapC Capsular polysacc 55.4 72 0.0016 28.1 7.7 43 105-147 14-61 (254)
94 TIGR03822 AblA_like_2 lysine-2 54.8 1.8E+02 0.0038 26.9 12.1 11 265-275 249-259 (321)
95 cd03323 D-glucarate_dehydratas 54.5 1E+02 0.0022 29.4 9.5 97 172-283 223-321 (395)
96 PRK07114 keto-hydroxyglutarate 54.4 1.3E+02 0.0028 26.4 9.4 91 174-279 25-117 (222)
97 PLN00191 enolase 54.3 1.6E+02 0.0035 28.8 10.9 97 173-280 295-394 (457)
98 PRK08776 cystathionine gamma-s 53.2 2.1E+02 0.0046 27.3 11.6 83 195-282 100-183 (405)
99 COG2069 CdhD CO dehydrogenase/ 52.9 1.9E+02 0.0042 26.8 11.2 93 185-284 159-261 (403)
100 TIGR01290 nifB nitrogenase cof 52.8 1.7E+02 0.0037 28.5 10.8 108 172-285 59-198 (442)
101 TIGR01060 eno phosphopyruvate 52.8 1.7E+02 0.0038 28.1 10.9 95 174-279 263-362 (425)
102 COG2089 SpsE Sialic acid synth 52.5 2E+02 0.0044 26.9 10.8 115 108-242 87-223 (347)
103 PRK13958 N-(5'-phosphoribosyl) 51.9 47 0.001 28.7 6.2 67 186-256 17-84 (207)
104 PF13378 MR_MLE_C: Enolase C-t 51.8 23 0.0005 26.9 3.9 51 231-282 3-54 (111)
105 TIGR02080 O_succ_thio_ly O-suc 51.5 2.1E+02 0.0046 26.9 11.1 80 195-279 91-171 (382)
106 COG3623 SgaU Putative L-xylulo 51.4 28 0.00061 31.0 4.6 62 85-147 64-136 (287)
107 COG0135 TrpF Phosphoribosylant 51.2 1.1E+02 0.0024 26.6 8.3 89 174-278 11-102 (208)
108 COG0820 Predicted Fe-S-cluster 50.9 1.7E+02 0.0036 27.6 9.9 86 197-283 216-328 (349)
109 PRK03031 rnpA ribonuclease P; 50.8 1.1E+02 0.0024 24.0 7.7 65 156-222 47-114 (122)
110 cd00452 KDPG_aldolase KDPG and 50.6 1.5E+02 0.0033 24.9 15.4 134 109-280 14-149 (190)
111 COG2022 ThiG Uncharacterized e 50.6 1.9E+02 0.004 25.9 12.8 109 170-281 77-189 (262)
112 TIGR03822 AblA_like_2 lysine-2 50.1 2.1E+02 0.0046 26.4 14.4 123 108-243 119-252 (321)
113 cd03321 mandelate_racemase Man 49.9 2.2E+02 0.0047 26.5 13.0 97 172-280 196-294 (355)
114 TIGR02370 pyl_corrinoid methyl 49.8 1.6E+02 0.0035 25.0 9.6 23 108-130 9-31 (197)
115 PRK07259 dihydroorotate dehydr 49.6 2E+02 0.0043 26.0 10.7 153 109-275 102-289 (301)
116 PRK14459 ribosomal RNA large s 49.5 1.8E+02 0.0038 27.7 10.1 90 196-285 241-359 (373)
117 PTZ00081 enolase; Provisional 49.4 2.1E+02 0.0045 27.9 10.8 96 173-279 281-381 (439)
118 PF06174 DUF987: Protein of un 48.8 5.1 0.00011 27.6 -0.2 9 5-13 35-43 (66)
119 cd01965 Nitrogenase_MoFe_beta_ 48.6 2.3E+02 0.0049 27.2 11.0 20 265-284 235-256 (428)
120 TIGR00381 cdhD CO dehydrogenas 48.4 2.5E+02 0.0055 26.8 11.9 91 187-284 150-250 (389)
121 PRK10558 alpha-dehydro-beta-de 48.4 56 0.0012 29.3 6.3 67 216-283 10-78 (256)
122 PLN02540 methylenetetrahydrofo 47.8 3.1E+02 0.0067 27.7 16.2 150 111-278 15-201 (565)
123 TIGR00048 radical SAM enzyme, 47.8 2.1E+02 0.0045 26.9 10.3 88 197-284 219-332 (355)
124 TIGR03471 HpnJ hopanoid biosyn 47.5 2.3E+02 0.005 27.5 11.0 65 209-275 322-392 (472)
125 PRK02910 light-independent pro 47.3 2.3E+02 0.0049 28.1 11.0 19 266-284 224-243 (519)
126 PRK15108 biotin synthase; Prov 46.3 2.5E+02 0.0055 26.2 12.0 108 173-284 76-194 (345)
127 cd07948 DRE_TIM_HCS Saccharomy 46.0 2.2E+02 0.0048 25.5 11.3 24 109-132 20-43 (262)
128 cd03313 enolase Enolase: Enola 45.9 2.8E+02 0.006 26.6 11.2 96 173-279 261-361 (408)
129 PRK00499 rnpA ribonuclease P; 45.2 1.4E+02 0.0031 23.0 7.6 64 156-222 38-104 (114)
130 TIGR02090 LEU1_arch isopropylm 45.1 1.7E+02 0.0037 27.5 9.3 99 172-278 18-129 (363)
131 PRK15440 L-rhamnonate dehydrat 44.7 88 0.0019 29.9 7.4 81 194-280 234-318 (394)
132 COG3867 Arabinogalactan endo-1 44.4 2.6E+02 0.0057 26.0 9.8 119 122-254 53-178 (403)
133 cd03327 MR_like_2 Mandelate ra 44.1 2.6E+02 0.0057 25.8 16.0 149 109-280 120-279 (341)
134 cd04731 HisF The cyclase subun 43.9 2.2E+02 0.0047 24.8 13.4 150 110-273 83-243 (243)
135 PRK09058 coproporphyrinogen II 43.0 3.2E+02 0.0069 26.5 11.4 62 172-235 226-304 (449)
136 PF13407 Peripla_BP_4: Peripla 42.9 1E+02 0.0022 26.4 7.1 72 176-254 14-89 (257)
137 PRK11613 folP dihydropteroate 42.6 2.5E+02 0.0055 25.5 9.7 100 174-281 36-140 (282)
138 PRK05283 deoxyribose-phosphate 42.6 2.1E+02 0.0046 25.7 9.0 78 108-195 143-227 (257)
139 PRK07329 hypothetical protein; 42.6 2.4E+02 0.0051 24.8 12.0 99 180-279 83-213 (246)
140 PF06792 UPF0261: Uncharacteri 42.3 59 0.0013 31.2 5.7 63 181-250 199-275 (403)
141 PRK06361 hypothetical protein; 42.1 2.1E+02 0.0047 24.2 13.5 153 112-282 11-169 (212)
142 TIGR02666 moaA molybdenum cofa 42.1 2.8E+02 0.006 25.4 15.1 119 107-243 42-176 (334)
143 PRK01313 rnpA ribonuclease P; 42.1 1.7E+02 0.0036 23.4 7.5 62 157-221 48-113 (129)
144 TIGR03239 GarL 2-dehydro-3-deo 41.9 80 0.0017 28.1 6.3 64 218-282 5-70 (249)
145 PF14387 DUF4418: Domain of un 41.5 13 0.00028 29.7 0.9 17 3-19 31-47 (124)
146 TIGR02026 BchE magnesium-proto 41.2 3.6E+02 0.0077 26.5 12.9 102 173-280 222-342 (497)
147 PRK10128 2-keto-3-deoxy-L-rham 41.2 2.1E+02 0.0046 25.8 8.9 139 84-259 89-244 (267)
148 PLN02363 phosphoribosylanthran 41.1 87 0.0019 28.1 6.4 75 174-256 56-131 (256)
149 TIGR00126 deoC deoxyribose-pho 41.1 2E+02 0.0043 25.0 8.4 73 108-193 129-205 (211)
150 PRK13803 bifunctional phosphor 41.0 1.7E+02 0.0038 29.7 9.2 96 174-278 12-108 (610)
151 cd03317 NAAAR N-acylamino acid 40.4 1.5E+02 0.0033 27.4 8.2 145 111-282 139-287 (354)
152 PRK14457 ribosomal RNA large s 40.3 3.2E+02 0.0069 25.6 12.3 107 178-284 196-329 (345)
153 PRK04820 rnpA ribonuclease P; 40.1 2.1E+02 0.0044 23.4 7.9 64 157-222 49-114 (145)
154 cd04742 NPD_FabD 2-Nitropropan 40.0 1.7E+02 0.0036 28.4 8.4 64 217-281 32-102 (418)
155 TIGR01428 HAD_type_II 2-haloal 39.8 92 0.002 25.9 6.1 63 178-243 61-127 (198)
156 PRK14465 ribosomal RNA large s 39.8 2.7E+02 0.0059 26.1 9.6 89 197-285 216-329 (342)
157 PRK13352 thiamine biosynthesis 39.8 3.6E+02 0.0078 26.1 14.6 107 108-235 74-188 (431)
158 PRK12928 lipoyl synthase; Prov 39.6 3E+02 0.0064 25.1 13.8 77 209-286 187-283 (290)
159 PRK10128 2-keto-3-deoxy-L-rham 38.9 1.2E+02 0.0025 27.5 6.8 66 216-282 9-76 (267)
160 PRK00396 rnpA ribonuclease P; 38.5 1.8E+02 0.004 23.2 7.2 64 157-222 47-112 (130)
161 smart00052 EAL Putative diguan 38.3 1.7E+02 0.0037 24.7 7.7 99 177-280 100-209 (241)
162 PRK03459 rnpA ribonuclease P; 37.7 1.9E+02 0.0042 22.7 7.2 63 157-222 49-114 (122)
163 TIGR02811 formate_TAT formate 37.3 34 0.00074 24.0 2.5 14 17-30 8-23 (66)
164 TIGR00676 fadh2 5,10-methylene 37.2 3.1E+02 0.0067 24.6 14.5 148 111-276 15-185 (272)
165 TIGR00221 nagA N-acetylglucosa 36.9 3.7E+02 0.0081 25.5 13.5 135 108-247 74-214 (380)
166 PF05049 IIGP: Interferon-indu 36.6 1.3E+02 0.0029 28.6 7.1 89 122-217 109-214 (376)
167 cd07938 DRE_TIM_HMGL 3-hydroxy 36.3 2.8E+02 0.006 25.0 8.9 101 173-278 17-131 (274)
168 PRK01492 rnpA ribonuclease P; 35.9 2.1E+02 0.0046 22.3 7.5 62 157-220 47-114 (118)
169 TIGR01927 menC_gamma/gm+ o-suc 35.9 3.4E+02 0.0074 24.7 9.6 82 194-283 183-266 (307)
170 cd03324 rTSbeta_L-fuconate_deh 35.8 4E+02 0.0088 25.6 15.9 150 109-281 196-352 (415)
171 COG2355 Zn-dependent dipeptida 35.7 97 0.0021 28.8 5.8 84 198-283 97-226 (313)
172 COG1149 MinD superfamily P-loo 35.4 86 0.0019 28.6 5.3 87 186-284 156-249 (284)
173 PRK11858 aksA trans-homoaconit 35.3 3.6E+02 0.0077 25.5 9.9 101 172-280 22-135 (378)
174 PLN03228 methylthioalkylmalate 35.2 2E+02 0.0043 28.6 8.3 106 172-282 102-230 (503)
175 COG0218 Predicted GTPase [Gene 34.7 3E+02 0.0066 23.8 9.6 114 93-222 77-198 (200)
176 PRK14464 ribosomal RNA large s 34.6 4E+02 0.0086 25.1 9.9 77 209-285 225-317 (344)
177 TIGR02764 spore_ybaN_pdaB poly 34.4 2.7E+02 0.0058 23.1 9.7 46 174-224 137-182 (191)
178 PRK06256 biotin synthase; Vali 34.3 3.7E+02 0.008 24.6 10.4 118 108-243 91-223 (336)
179 PF00762 Ferrochelatase: Ferro 34.3 1.1E+02 0.0024 28.3 6.1 65 175-240 206-272 (316)
180 PRK01732 rnpA ribonuclease P; 34.1 2.2E+02 0.0048 22.0 7.6 64 157-222 46-111 (114)
181 PF07745 Glyco_hydro_53: Glyco 33.8 1.1E+02 0.0023 28.7 5.9 116 121-254 13-132 (332)
182 PRK14456 ribosomal RNA large s 33.8 3.3E+02 0.0071 25.8 9.3 77 208-284 260-352 (368)
183 PRK07535 methyltetrahydrofolat 33.3 3.6E+02 0.0077 24.2 9.2 26 209-234 173-200 (261)
184 COG0313 Predicted methyltransf 33.0 2.7E+02 0.0059 25.3 8.1 69 184-280 44-112 (275)
185 PRK08247 cystathionine gamma-s 32.6 2.4E+02 0.0051 26.3 8.2 45 234-278 125-170 (366)
186 PF05368 NmrA: NmrA-like famil 32.6 1.4E+02 0.0031 25.4 6.3 67 217-285 38-105 (233)
187 PLN02746 hydroxymethylglutaryl 32.5 4.3E+02 0.0093 24.9 13.1 133 108-243 65-233 (347)
188 cd03326 MR_like_1 Mandelate ra 32.5 2.2E+02 0.0047 27.1 7.9 146 109-276 160-313 (385)
189 PRK14455 ribosomal RNA large s 32.0 2.9E+02 0.0062 26.0 8.6 88 197-284 223-336 (356)
190 TIGR03247 glucar-dehydr glucar 32.0 2.7E+02 0.0058 27.1 8.6 84 196-281 252-336 (441)
191 PRK14462 ribosomal RNA large s 32.0 4.4E+02 0.0096 24.9 10.9 87 198-284 225-337 (356)
192 cd00959 DeoC 2-deoxyribose-5-p 31.9 2.7E+02 0.0058 23.7 7.8 69 108-191 128-202 (203)
193 PF14871 GHL6: Hypothetical gl 31.7 52 0.0011 26.3 3.1 25 260-284 43-67 (132)
194 cd01321 ADGF Adenosine deamina 31.4 4.4E+02 0.0095 24.6 13.6 15 264-278 236-250 (345)
195 PRK08045 cystathionine gamma-s 31.3 4.4E+02 0.0096 24.8 9.8 49 231-279 123-172 (386)
196 PRK07811 cystathionine gamma-s 31.1 4.5E+02 0.0098 24.7 10.5 95 180-280 87-182 (388)
197 PRK09536 btuD corrinoid ABC tr 31.1 1.7E+02 0.0036 28.1 6.9 74 212-286 279-352 (402)
198 TIGR02090 LEU1_arch isopropylm 31.1 3.1E+02 0.0068 25.7 8.7 24 109-132 20-43 (363)
199 cd07945 DRE_TIM_CMS Leptospira 30.6 4.1E+02 0.0088 24.0 13.0 68 174-243 109-183 (280)
200 TIGR00238 KamA family protein. 30.6 4.4E+02 0.0096 24.4 12.3 23 265-287 241-263 (331)
201 cd03320 OSBS o-Succinylbenzoat 30.4 2.4E+02 0.0053 24.9 7.5 80 194-280 153-233 (263)
202 PRK02901 O-succinylbenzoate sy 30.4 4.5E+02 0.0097 24.4 10.2 80 195-284 162-242 (327)
203 PRK05718 keto-hydroxyglutarate 30.2 2.1E+02 0.0046 24.8 6.8 87 174-278 25-112 (212)
204 PRK14463 ribosomal RNA large s 30.1 4.7E+02 0.01 24.5 9.6 89 197-285 211-325 (349)
205 cd01573 modD_like ModD; Quinol 30.1 1.8E+02 0.0039 26.2 6.6 32 214-245 172-203 (272)
206 TIGR00035 asp_race aspartate r 29.9 3.2E+02 0.007 23.6 8.1 64 174-238 15-89 (229)
207 PF13380 CoA_binding_2: CoA bi 29.9 1.4E+02 0.003 23.0 5.2 18 262-279 90-107 (116)
208 cd02070 corrinoid_protein_B12- 29.9 3.4E+02 0.0075 22.9 10.7 23 108-130 8-30 (201)
209 TIGR00677 fadh2_euk methylenet 29.8 4.2E+02 0.0092 23.9 14.5 149 111-276 16-189 (281)
210 cd03770 SR_TndX_transposase Se 29.6 99 0.0021 24.6 4.4 52 179-230 54-105 (140)
211 TIGR00188 rnpA ribonuclease P 29.6 2.5E+02 0.0054 21.2 7.5 62 156-220 41-104 (105)
212 cd07938 DRE_TIM_HMGL 3-hydroxy 29.6 4.2E+02 0.0091 23.8 12.7 24 108-131 17-40 (274)
213 PRK00915 2-isopropylmalate syn 28.9 5E+02 0.011 25.7 10.0 102 172-282 22-140 (513)
214 PRK13010 purU formyltetrahydro 28.8 4.5E+02 0.0098 24.0 10.5 142 113-279 23-174 (289)
215 COG2200 Rtn c-di-GMP phosphodi 28.7 3.7E+02 0.0079 23.8 8.4 100 176-280 102-212 (256)
216 PRK08195 4-hyroxy-2-oxovalerat 28.5 4.9E+02 0.011 24.2 16.2 113 108-242 22-150 (337)
217 COG2896 MoaA Molybdenum cofact 28.1 5E+02 0.011 24.2 12.4 117 108-243 43-174 (322)
218 PLN02389 biotin synthase 28.1 5.3E+02 0.011 24.5 10.1 109 172-285 115-237 (379)
219 PF09989 DUF2229: CoA enzyme a 28.0 2E+02 0.0044 25.0 6.4 35 246-280 184-218 (221)
220 PRK15408 autoinducer 2-binding 27.8 4.8E+02 0.01 24.0 10.5 83 159-251 25-111 (336)
221 cd03174 DRE_TIM_metallolyase D 27.7 4.1E+02 0.0088 23.1 14.0 25 108-132 16-40 (265)
222 TIGR01862 N2-ase-Ialpha nitrog 27.6 5.7E+02 0.012 24.7 11.0 145 131-284 96-272 (443)
223 PRK00912 ribonuclease P protei 27.6 4.1E+02 0.0088 23.0 12.7 137 111-279 16-172 (237)
224 CHL00162 thiG thiamin biosynth 27.6 4.6E+02 0.01 23.7 12.5 111 170-283 78-198 (267)
225 TIGR01496 DHPS dihydropteroate 27.5 4.4E+02 0.0096 23.4 10.6 110 115-234 86-207 (257)
226 TIGR02311 HpaI 2,4-dihydroxyhe 27.0 2.1E+02 0.0046 25.3 6.5 66 217-282 4-70 (249)
227 PF00682 HMGL-like: HMGL-like 26.9 4.1E+02 0.0088 22.8 15.0 121 108-243 11-144 (237)
228 PF01890 CbiG_C: Cobalamin syn 26.8 1.2E+02 0.0027 23.7 4.4 23 260-282 44-66 (121)
229 PRK10508 hypothetical protein; 26.7 1E+02 0.0022 28.7 4.5 42 173-220 286-327 (333)
230 PF08734 GYD: GYD domain; Int 26.6 2.7E+02 0.0058 20.6 6.7 67 176-242 19-90 (91)
231 PRK07535 methyltetrahydrofolat 26.6 4.7E+02 0.01 23.4 11.2 98 174-280 23-122 (261)
232 TIGR01329 cysta_beta_ly_E cyst 26.5 5.4E+02 0.012 24.1 9.7 47 233-279 119-166 (378)
233 cd02801 DUS_like_FMN Dihydrour 26.4 4E+02 0.0087 22.6 10.0 135 109-256 65-215 (231)
234 PF00809 Pterin_bind: Pterin b 26.4 3.6E+02 0.0079 23.1 7.7 109 115-232 83-205 (210)
235 PRK08072 nicotinate-nucleotide 26.3 3.7E+02 0.0081 24.4 7.9 25 227-253 190-214 (277)
236 PRK09427 bifunctional indole-3 26.2 2.5E+02 0.0054 27.5 7.2 65 186-257 273-339 (454)
237 PF01118 Semialdhyde_dh: Semia 26.1 99 0.0021 23.8 3.7 27 109-135 75-101 (121)
238 cd01299 Met_dep_hydrolase_A Me 25.7 5E+02 0.011 23.4 17.0 95 174-278 118-219 (342)
239 PTZ00413 lipoate synthase; Pro 25.4 6.2E+02 0.013 24.4 13.0 170 106-285 175-373 (398)
240 PRK13361 molybdenum cofactor b 25.2 3.5E+02 0.0076 24.9 7.8 72 214-286 105-197 (329)
241 cd00248 Mth938-like Mth938-lik 25.2 2.6E+02 0.0056 21.4 5.8 19 263-281 68-86 (109)
242 PRK10200 putative racemase; Pr 25.0 4.6E+02 0.01 22.8 8.2 69 174-243 15-94 (230)
243 TIGR03128 RuMP_HxlA 3-hexulose 25.0 4.1E+02 0.0089 22.2 9.0 86 186-279 18-107 (206)
244 PRK13602 putative ribosomal pr 25.0 2.7E+02 0.0059 20.1 6.0 56 216-280 3-59 (82)
245 PRK00164 moaA molybdenum cofac 24.9 4.5E+02 0.0098 23.9 8.5 71 215-286 110-201 (331)
246 PF05913 DUF871: Bacterial pro 24.9 27 0.00059 33.0 0.3 147 109-283 12-178 (357)
247 TIGR02814 pfaD_fam PfaD family 24.9 3.9E+02 0.0084 26.1 8.2 64 217-281 37-107 (444)
248 cd03329 MR_like_4 Mandelate ra 24.8 5.7E+02 0.012 23.8 15.7 149 109-280 143-298 (368)
249 cd01981 Pchlide_reductase_B Pc 24.7 6.2E+02 0.013 24.1 11.9 14 271-284 234-247 (430)
250 COG1902 NemA NADH:flavin oxido 24.5 6.1E+02 0.013 24.0 14.8 71 180-251 240-315 (363)
251 cd00338 Ser_Recombinase Serine 24.5 1.5E+02 0.0032 22.8 4.6 52 179-231 51-102 (137)
252 COG1104 NifS Cysteine sulfinat 24.3 3.3E+02 0.0071 26.1 7.4 68 211-278 103-175 (386)
253 PRK10551 phage resistance prot 24.3 2.9E+02 0.0063 27.3 7.5 100 176-280 364-473 (518)
254 PRK07671 cystathionine beta-ly 24.2 4.3E+02 0.0093 24.8 8.4 14 265-278 155-168 (377)
255 PRK10188 DNA-binding transcrip 24.2 2.9E+02 0.0062 24.3 6.7 84 174-275 22-115 (240)
256 PRK13776 formimidoylglutamase; 24.1 3E+02 0.0064 25.4 7.1 27 209-235 269-295 (318)
257 PRK09389 (R)-citramalate synth 24.1 5.2E+02 0.011 25.5 9.1 99 172-278 20-131 (488)
258 COG0800 Eda 2-keto-3-deoxy-6-p 24.1 2.8E+02 0.006 24.2 6.3 80 183-279 31-111 (211)
259 PRK10605 N-ethylmaleimide redu 24.0 6.1E+02 0.013 23.8 12.1 77 173-254 245-321 (362)
260 TIGR03821 AblA_like_1 lysine-2 24.0 5.7E+02 0.012 23.5 10.8 121 108-243 125-258 (321)
261 PRK10060 RNase II stability mo 23.9 7.8E+02 0.017 25.0 11.7 100 176-280 507-617 (663)
262 TIGR03597 GTPase_YqeH ribosome 23.8 6E+02 0.013 23.7 11.2 138 92-241 28-173 (360)
263 COG2179 Predicted hydrolase of 23.7 3.2E+02 0.0069 23.1 6.3 57 185-244 22-82 (175)
264 PRK09613 thiH thiamine biosynt 23.6 7.1E+02 0.015 24.5 9.9 104 172-278 114-236 (469)
265 COG1168 MalY Bifunctional PLP- 23.6 2.2E+02 0.0048 27.2 6.0 143 110-279 40-196 (388)
266 PF00148 Oxidored_nitro: Nitro 23.5 2.5E+02 0.0054 26.3 6.6 99 183-284 98-227 (398)
267 PRK00507 deoxyribose-phosphate 23.4 4.9E+02 0.011 22.6 8.0 27 108-134 133-159 (221)
268 PRK02412 aroD 3-dehydroquinate 23.4 5.2E+02 0.011 22.8 17.7 114 109-234 26-144 (253)
269 PRK12928 lipoyl synthase; Prov 23.4 5.7E+02 0.012 23.2 11.3 72 172-245 86-163 (290)
270 cd01974 Nitrogenase_MoFe_beta 23.3 6.7E+02 0.014 24.1 11.2 20 265-284 239-260 (435)
271 TIGR03821 AblA_like_1 lysine-2 23.3 5.9E+02 0.013 23.4 11.5 22 265-286 224-245 (321)
272 TIGR00126 deoC deoxyribose-pho 23.1 5E+02 0.011 22.5 8.9 157 108-280 15-181 (211)
273 PLN02775 Probable dihydrodipic 23.1 5.9E+02 0.013 23.3 8.7 70 183-257 69-138 (286)
274 COG0352 ThiE Thiamine monophos 23.0 2.8E+02 0.006 24.1 6.2 135 114-281 24-165 (211)
275 TIGR03278 methan_mark_10 putat 23.0 6.8E+02 0.015 24.0 12.2 19 211-229 90-108 (404)
276 cd00405 PRAI Phosphoribosylant 22.9 1.7E+02 0.0037 24.7 5.0 44 193-241 73-116 (203)
277 PLN02923 xylose isomerase 22.7 2.8E+02 0.006 27.1 6.5 46 184-232 130-185 (478)
278 PRK07027 cobalamin biosynthesi 22.7 1.5E+02 0.0032 23.4 4.2 22 260-281 46-67 (126)
279 TIGR01660 narH nitrate reducta 22.7 40 0.00087 33.0 1.0 54 223-276 264-317 (492)
280 cd08568 GDPD_TmGDE_like Glycer 22.7 4.8E+02 0.01 22.3 7.8 66 217-282 110-202 (226)
281 TIGR03569 NeuB_NnaB N-acetylne 22.7 6.3E+02 0.014 23.5 11.9 130 108-257 73-226 (329)
282 PRK07114 keto-hydroxyglutarate 22.6 4.6E+02 0.0099 23.0 7.6 36 109-144 25-60 (222)
283 smart00642 Aamy Alpha-amylase 22.5 1.2E+02 0.0025 25.2 3.7 17 264-280 73-89 (166)
284 COG0502 BioB Biotin synthase a 22.5 6.5E+02 0.014 23.6 10.4 117 108-243 84-216 (335)
285 PTZ00445 p36-lilke protein; Pr 22.4 4E+02 0.0086 23.4 7.0 88 110-200 77-185 (219)
286 TIGR00423 radical SAM domain p 22.3 5.9E+02 0.013 23.1 8.8 17 213-229 107-123 (309)
287 COG0646 MetH Methionine syntha 22.3 6.3E+02 0.014 23.4 11.0 30 172-201 135-164 (311)
288 KOG0369 Pyruvate carboxylase [ 22.0 9.3E+02 0.02 25.3 10.4 144 111-286 43-196 (1176)
289 COG1820 NagA N-acetylglucosami 22.0 4.9E+02 0.011 24.9 8.0 134 109-248 72-211 (380)
290 PRK13774 formimidoylglutamase; 22.0 3.2E+02 0.0068 25.1 6.8 28 209-236 264-291 (311)
291 PF02581 TMP-TENI: Thiamine mo 21.9 4.6E+02 0.0099 21.6 9.8 59 225-283 95-158 (180)
292 PRK14468 ribosomal RNA large s 21.9 5.7E+02 0.012 23.9 8.5 76 172-247 120-202 (343)
293 PRK06294 coproporphyrinogen II 21.9 6.6E+02 0.014 23.5 11.3 62 172-235 166-243 (370)
294 PRK05718 keto-hydroxyglutarate 21.8 4.9E+02 0.011 22.5 7.6 37 108-144 24-60 (212)
295 cd07947 DRE_TIM_Re_CS Clostrid 21.8 4.4E+02 0.0096 23.8 7.6 93 176-279 20-133 (279)
296 PRK09140 2-dehydro-3-deoxy-6-p 21.7 4.2E+02 0.0092 22.7 7.2 87 174-278 20-108 (206)
297 PRK11359 cyclic-di-GMP phospho 21.7 4.6E+02 0.01 26.8 8.7 68 209-280 677-754 (799)
298 cd01973 Nitrogenase_VFe_beta_l 21.7 7.5E+02 0.016 24.0 12.1 56 193-248 125-191 (454)
299 PRK06176 cystathionine gamma-s 21.7 4.6E+02 0.01 24.6 8.0 14 265-278 155-168 (380)
300 PRK09140 2-dehydro-3-deoxy-6-p 21.6 5.2E+02 0.011 22.2 16.0 109 108-248 19-127 (206)
301 PRK14041 oxaloacetate decarbox 21.4 4.7E+02 0.01 25.7 8.1 23 174-197 23-45 (467)
302 COG1751 Uncharacterized conser 21.3 2.7E+02 0.0059 23.2 5.4 76 107-192 10-85 (186)
303 TIGR01686 FkbH FkbH-like domai 21.2 4.2E+02 0.009 24.2 7.5 63 209-276 33-102 (320)
304 cd02810 DHOD_DHPD_FMN Dihydroo 21.2 5.9E+02 0.013 22.6 12.3 131 109-254 109-272 (289)
305 TIGR03217 4OH_2_O_val_ald 4-hy 21.1 6.7E+02 0.015 23.3 16.2 24 108-131 21-44 (333)
306 KOG0544 FKBP-type peptidyl-pro 21.0 31 0.00068 26.2 -0.1 7 4-10 23-29 (108)
307 COG0821 gcpE 1-hydroxy-2-methy 21.0 6.1E+02 0.013 23.9 8.2 89 175-277 35-126 (361)
308 cd00668 Ile_Leu_Val_MetRS_core 21.0 1.4E+02 0.003 27.2 4.2 47 176-227 82-131 (312)
309 cd03768 SR_ResInv Serine Recom 20.8 2.2E+02 0.0049 21.6 4.9 47 179-228 42-88 (126)
310 PRK02083 imidazole glycerol ph 20.8 5.7E+02 0.012 22.3 14.6 85 187-277 163-251 (253)
311 PF01527 HTH_Tnp_1: Transposas 20.7 29 0.00063 24.2 -0.3 42 108-149 7-48 (76)
312 cd00814 MetRS_core catalytic c 20.7 1.5E+02 0.0032 27.2 4.4 46 176-225 69-114 (319)
313 TIGR00321 dhys deoxyhypusine s 20.7 6.1E+02 0.013 23.4 8.2 17 263-279 163-179 (301)
314 COG3737 Uncharacterized conser 20.6 2.6E+02 0.0056 22.2 4.9 49 234-282 56-104 (127)
315 PF00072 Response_reg: Respons 20.6 3.3E+02 0.0072 19.5 5.7 54 188-245 38-93 (112)
316 PRK05628 coproporphyrinogen II 20.6 7E+02 0.015 23.3 12.4 28 172-200 171-198 (375)
317 PF01053 Cys_Met_Meta_PP: Cys/ 20.6 3.8E+02 0.0081 25.5 7.1 76 209-284 104-181 (386)
318 COG3172 NadR Predicted ATPase/ 20.5 4.2E+02 0.0092 22.4 6.4 94 122-223 78-185 (187)
319 PRK09454 ugpQ cytoplasmic glyc 20.5 5.8E+02 0.012 22.3 8.4 19 263-281 198-216 (249)
320 smart00857 Resolvase Resolvase 20.5 2.9E+02 0.0062 21.6 5.6 52 179-231 51-102 (148)
321 TIGR03700 mena_SCO4494 putativ 20.5 6.9E+02 0.015 23.2 9.8 110 173-286 79-213 (351)
322 cd08556 GDPD Glycerophosphodie 20.4 4.6E+02 0.01 21.1 11.0 62 217-282 83-168 (189)
323 PLN02907 glutamate-tRNA ligase 20.4 4.5E+02 0.0098 27.4 8.1 62 174-244 260-321 (722)
324 PF00491 Arginase: Arginase fa 20.3 2.9E+02 0.0063 24.5 6.1 56 180-236 186-256 (277)
325 PRK09413 IS2 repressor TnpA; R 20.3 1.6E+02 0.0035 22.8 3.9 44 108-151 13-56 (121)
326 PF05378 Hydant_A_N: Hydantoin 20.3 2.3E+02 0.005 23.7 5.1 44 209-274 133-176 (176)
327 PTZ00402 glutamyl-tRNA synthet 20.3 4.9E+02 0.011 26.5 8.0 63 174-245 99-162 (601)
328 PRK08133 O-succinylhomoserine 20.3 7.3E+02 0.016 23.3 11.1 59 220-279 122-181 (390)
329 COG2159 Predicted metal-depend 20.2 3.2E+02 0.007 24.8 6.4 91 186-281 55-164 (293)
330 COG3653 N-acyl-D-aspartate/D-g 20.1 8.5E+02 0.018 24.0 10.0 80 112-202 183-277 (579)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2.9e-49 Score=363.75 Aligned_cols=199 Identities=25% Similarity=0.402 Sum_probs=180.6
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--CcHHHHHHHHhhhhccCCCceEE
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~ 158 (287)
++++|++|++||+||||||.+++.+...+++++.+++++|+|+||||||||++|| .+|++||+||++.++ |+
T Consensus 3 ~r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~-Rd----- 76 (316)
T COG0667 3 YRRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGR-RD----- 76 (316)
T ss_pred ceecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCC-CC-----
Confidence 6789999999999999999998755556667888899999999999999999998 599999999998663 33
Q ss_pred EEEeccccCCCC--------CCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEe
Q 023076 159 KVRGLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (287)
Q Consensus 159 ~v~i~tK~~~~~--------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGv 230 (287)
+++|+||++... .+.++++|+++++.||+|||||||||||+||||+..+ .+|++++|++|+++||||+||+
T Consensus 77 ~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p-~~e~~~aL~~l~~~G~ir~iG~ 155 (316)
T COG0667 77 KVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETP-IEETLEALDELVREGKIRYIGV 155 (316)
T ss_pred eEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEEe
Confidence 788888875432 4579999999999999999999999999999999887 8899999999999999999999
Q ss_pred cCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 231 TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 231 Sn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
||++++++.++.+...+++++|.+||+++|..+.+++++|+++||++++||||++|
T Consensus 156 S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G 211 (316)
T COG0667 156 SNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASG 211 (316)
T ss_pred cCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCcccc
Confidence 99999999999875357999999999999988888999999999999999999988
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=4.8e-48 Score=345.46 Aligned_cols=184 Identities=23% Similarity=0.336 Sum_probs=162.7
Q ss_pred CccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEecccc
Q 023076 87 DSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW 166 (287)
Q Consensus 87 tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~ 166 (287)
+|.+||.||||||++++. +...+.+.+|++.|+|+||||.+|| +|+.+|++|++.+..|+ ++||+||.
T Consensus 10 ~g~~iP~iGlGt~~~~~~------~~~~~av~~Al~~Gyr~IDTA~~Yg-nE~~VG~aI~~s~v~Re-----elFittKv 77 (280)
T COG0656 10 NGVEIPAIGLGTWQIGDD------EWAVRAVRAALELGYRLIDTAEIYG-NEEEVGEAIKESGVPRE-----ELFITTKV 77 (280)
T ss_pred CCCcccCcceEeeecCCc------hhHHHHHHHHHHhCcceEecHhHhc-CHHHHHHHHHhcCCCHH-----HeEEEeec
Confidence 347799999999999751 3388999999999999999999999 57778999998544444 89999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-
Q 023076 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN- 244 (287)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~- 244 (287)
|+. +.+++.+.+++++||+|||+||+|||++|||.+. ...+.|+|++|++++++|+||+||||||+.++++++++.
T Consensus 78 w~~--~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~ 155 (280)
T COG0656 78 WPS--DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLA 155 (280)
T ss_pred CCc--cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhc
Confidence 986 5688999999999999999999999999999764 222679999999999999999999999999999999885
Q ss_pred CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 245 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 245 ~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
++.|++||++|||+.+.. +++++|+++||.++|||||++|
T Consensus 156 ~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g 195 (280)
T COG0656 156 KVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKG 195 (280)
T ss_pred CCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccc
Confidence 578999999999977544 5999999999999999999975
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.3e-47 Score=347.31 Aligned_cols=204 Identities=29% Similarity=0.428 Sum_probs=182.6
Q ss_pred cceeEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--CcHHHHHHHHhhhhccCCC
Q 023076 77 KQSITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPP 154 (287)
Q Consensus 77 ~~~~~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~ 154 (287)
....++++|++|++||++|||||.+...+++.+++++.+++++|+|+|+||||||++|| .+|.++|++|++.+..|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~- 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD- 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC-
Confidence 34568999999999999999998554433447999999999999999999999999998 599999999999766666
Q ss_pred ceEEEEEeccccCCC-----CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEE
Q 023076 155 EFLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 229 (287)
Q Consensus 155 ~~~~~v~i~tK~~~~-----~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iG 229 (287)
+++|+||++.. +...++.++...++.||+|||++||||||+||||+..+ .++++++|.+++++|+||+||
T Consensus 89 ----~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~p-iee~m~aL~~lve~Gki~yiG 163 (336)
T KOG1575|consen 89 ----KVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVP-IEETMRALTDLVEQGKIRYWG 163 (336)
T ss_pred ----cEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCC-HHHHHHHHHHHHhcCceEEEE
Confidence 77778885432 35678899999999999999999999999999999999 999999999999999999999
Q ss_pred ecCCCHHHHHHHHHcC-CCeEEEeecCCccCCCchH-HHHHHHHHcCCeEEEcccCCCC
Q 023076 230 LTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQ-KMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 230 vSn~~~~~l~~~~~~~-~~~~~~Q~~~n~~~~~~~~-~ll~~~~~~gi~via~spl~~G 286 (287)
+|+++++++.++.... +|+.++|++||+++|..++ ++++.|+++||++++||||++|
T Consensus 164 lSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G 222 (336)
T KOG1575|consen 164 LSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRG 222 (336)
T ss_pred eccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccc
Confidence 9999999999998753 6799999999999998555 6999999999999999999998
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.6e-45 Score=337.32 Aligned_cols=198 Identities=19% Similarity=0.251 Sum_probs=171.4
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC--CcHHHHHHHHhhhhccCCCceEE
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLD 158 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~ 158 (287)
++++|++|++||+||||||.+.+ +..+++++.+++++|++.|||+||||++|| .+|++||++|+..+.+|+
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g--~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~----- 73 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFG--GQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRS----- 73 (317)
T ss_pred CcccCCCCCeecceeecCCccCC--CCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcc-----
Confidence 36799999999999999997432 146788999999999999999999999997 589999999986432333
Q ss_pred EEEeccccCCC-----CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC
Q 023076 159 KVRGLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF 233 (287)
Q Consensus 159 ~v~i~tK~~~~-----~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~ 233 (287)
+++|+||++.. ..+++++.+++++++||+|||+||||+|++|||++..+ .+++|++|++|+++||||+||+|||
T Consensus 74 ~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~ 152 (317)
T TIGR01293 74 SYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTP-MEETVRAMTYVINQGMAMYWGTSRW 152 (317)
T ss_pred cEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCC
Confidence 78889996321 13468999999999999999999999999999998776 8899999999999999999999999
Q ss_pred CHHHHHHHHH----cC-CCeEEEeecCCccCCCc-hHHHHHHHHHcCCeEEEcccCCCC
Q 023076 234 DTERLRIILE----NG-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 234 ~~~~l~~~~~----~~-~~~~~~Q~~~n~~~~~~-~~~ll~~~~~~gi~via~spl~~G 286 (287)
+.++++++.. .+ ++++++|++||++++.. +.+++++|+++||++++|+||++|
T Consensus 153 ~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G 211 (317)
T TIGR01293 153 SSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACG 211 (317)
T ss_pred CHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEecccccc
Confidence 9999888653 23 57899999999998874 668999999999999999999987
No 5
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.6e-44 Score=332.52 Aligned_cols=200 Identities=21% Similarity=0.312 Sum_probs=172.0
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHHHHHhhhhccCCCceEE
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (287)
|++||+||++||+||||||++++.|+..+.+++.+++++|++.|||+||||+.||. +|+++|++|++.+.+|+
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~----- 75 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPRE----- 75 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcc-----
Confidence 46799999999999999999987777788999999999999999999999999976 89999999987543343
Q ss_pred EEEeccccCCC--CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC--cHHHHHHHHHHHHHcCCccEEEecCCC
Q 023076 159 KVRGLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--GYLDALNHLTDLKEEGKIKTVALTNFD 234 (287)
Q Consensus 159 ~v~i~tK~~~~--~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~--~~~e~~~aL~~l~~~G~Ir~iGvSn~~ 234 (287)
+++|+||+++. ..+++++.+++++++||+|||+||||+|++|||+.... ..+++|++|++|+++||||+||+|||+
T Consensus 76 ~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 155 (314)
T PLN02587 76 KYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLP 155 (314)
T ss_pred eEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 78999998642 23578999999999999999999999999999975321 257899999999999999999999999
Q ss_pred HHHHHHHHHc---C-CCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 235 TERLRIILEN---G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 235 ~~~l~~~~~~---~-~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
+++++.+.+. + +.+..+|+.||+.++.. .+++++|+++||++++|+||++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G 210 (314)
T PLN02587 156 LAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMG 210 (314)
T ss_pred HHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhcc
Confidence 9988877652 2 34556788999876543 48999999999999999999987
No 6
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.3e-44 Score=323.81 Aligned_cols=189 Identities=20% Similarity=0.356 Sum_probs=167.3
Q ss_pred CCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccc
Q 023076 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (287)
Q Consensus 86 ~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (287)
++|.+||.||||||+. +..+..++++.|++.|+||||||..||+.++ +|++|++.-.+.. ..|.++||+||
T Consensus 10 n~G~~mP~iGlGTw~~-------~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~e-vG~aik~~i~~~~-v~RediFiTSK 80 (300)
T KOG1577|consen 10 NNGFKMPIIGLGTWQS-------PPGQVAEAVKAAIKAGYRHIDTAHVYGNEKE-VGEAIKELLAEGG-VKREDIFITSK 80 (300)
T ss_pred cCCCccceeeeEeccc-------ChhhHHHHHHHHHHhCcceeechhhhCChHH-HHHHHHHHhhhCC-cchhhheeeec
Confidence 4559999999999984 3588999999999999999999999998555 6999998644433 45669999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC---------------CCcHHHHHHHHHHHHHcCCccEEEe
Q 023076 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------NPGYLDALNHLTDLKEEGKIKTVAL 230 (287)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---------------~~~~~e~~~aL~~l~~~G~Ir~iGv 230 (287)
.|+. ...++.++.++++||++||+||+|||++|||-.. ..+..++|++||+++++|++|+|||
T Consensus 81 lw~~--~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 81 LWPT--DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred cCcc--ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCceEeee
Confidence 9986 5689999999999999999999999999998653 1237789999999999999999999
Q ss_pred cCCCHHHHHHHHHc-CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCCC
Q 023076 231 TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVNN 287 (287)
Q Consensus 231 Sn~~~~~l~~~~~~-~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G~ 287 (287)
|||+..++++++.. .++|.+||+|+|| +..+.+++++|+++||.+.|||||+.++
T Consensus 159 SNF~~~~le~ll~~~ki~P~vnQvE~HP--~~~Q~~L~~fCk~~~I~v~AYSpLg~~~ 214 (300)
T KOG1577|consen 159 SNFNIKQLEELLNLAKIKPAVNQVECHP--YLQQKKLVEFCKSKGIVVTAYSPLGSPG 214 (300)
T ss_pred ecCCHHHHHHHHhcCCCCCccceeeccC--CcChHHHHHHHhhCCcEEEEecCCCCCC
Confidence 99999999999986 4899999999999 5678899999999999999999999874
No 7
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.1e-44 Score=334.81 Aligned_cols=198 Identities=22% Similarity=0.302 Sum_probs=169.9
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC----cHHHHHHHHhhhh-ccCCCc
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP----AEDLYGIFINRVR-RERPPE 155 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~----sE~~lG~al~~~~-r~r~~~ 155 (287)
++++|+||++||+||||||+..+. ..+.+++.+++++|++.|||+||||+.||+ +|++||++|++.. ..|+
T Consensus 15 ~r~lg~tg~~vs~lglG~~~~~g~--~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd-- 90 (346)
T PRK09912 15 YRYCGKSGLRLPALSLGLWHNFGH--VNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRD-- 90 (346)
T ss_pred eeecCCCCcccccccccCccccCC--CCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccCCCC--
Confidence 788999999999999999973221 235678899999999999999999999983 8999999998631 1233
Q ss_pred eEEEEEeccccCC----C--CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEE
Q 023076 156 FLDKVRGLTKWVP----P--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA 229 (287)
Q Consensus 156 ~~~~v~i~tK~~~----~--~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iG 229 (287)
+++|+||++. . +...+++.+++++++||+|||+||||+|++|||++..+ .+++|++|++|+++||||+||
T Consensus 91 ---~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 91 ---ELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTP-MEETASALAHAVQSGKALYVG 166 (346)
T ss_pred ---eEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCC-HHHHHHHHHHHHHcCCeeEEE
Confidence 7888888642 1 12467999999999999999999999999999988776 899999999999999999999
Q ss_pred ecCCCHHHHHHHHH----cCCCeEEEeecCCccCCCch-HHHHHHHHHcCCeEEEcccCCCC
Q 023076 230 LTNFDTERLRIILE----NGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 230 vSn~~~~~l~~~~~----~~~~~~~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via~spl~~G 286 (287)
||||++++++++.+ .++++.++|++||++++..+ .+++++|+++||++++|+||++|
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G 228 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQG 228 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCc
Confidence 99999999887654 25688999999999998765 47999999999999999999987
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=8.1e-44 Score=332.03 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=169.9
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCC---------CcHHHHHHHHhhhhcc
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYG---------PAEDLYGIFINRVRRE 151 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG---------~sE~~lG~al~~~~r~ 151 (287)
++++|+||++||+||||||.+|+ ..+++++.++++.|++.||||||||+.|| .+|++||++|+..+ .
T Consensus 3 ~r~lg~t~~~vs~iglGt~~~g~---~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~~-~ 78 (346)
T PRK10625 3 YHRIPHSSLEVSTLGLGTMTFGE---QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKRG-S 78 (346)
T ss_pred ceecCCCCCccccEeEeccccCC---CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhcC-C
Confidence 67899999999999999999874 35678999999999999999999999995 48999999998532 2
Q ss_pred CCCceEEEEEeccccCCCC----------CCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC----------------
Q 023076 152 RPPEFLDKVRGLTKWVPPP----------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---------------- 205 (287)
Q Consensus 152 r~~~~~~~v~i~tK~~~~~----------~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---------------- 205 (287)
|+ +++|+||++... .+.+++.+++++++||+|||+||||||++|||++.
T Consensus 79 R~-----~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~ 153 (346)
T PRK10625 79 RE-----KLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAP 153 (346)
T ss_pred cc-----eEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccC
Confidence 33 788999974211 14689999999999999999999999999999752
Q ss_pred CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cC-CCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEc
Q 023076 206 NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 206 ~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~----~~-~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~ 280 (287)
...++++|++|++|+++||||+||+|||+.+++++++. .+ ..+.++|++||++++..+.+++++|+++||++++|
T Consensus 154 ~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~ 233 (346)
T PRK10625 154 AVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAY 233 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEe
Confidence 11278999999999999999999999999999887653 23 35889999999999877779999999999999999
Q ss_pred ccCCCC
Q 023076 281 LPFLVN 286 (287)
Q Consensus 281 spl~~G 286 (287)
|||++|
T Consensus 234 spL~~G 239 (346)
T PRK10625 234 SCLAFG 239 (346)
T ss_pred ccccCe
Confidence 999987
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9e-44 Score=322.27 Aligned_cols=198 Identities=29% Similarity=0.534 Sum_probs=178.3
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHHHHHhhhhccCCCceEE
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (287)
++++|+||++||+||||||.++..| .+.+++.++++.|++.|||+||||+.||. +|+.+|++|+..+ .|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~--~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~-~R~----- 72 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY--VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERG-PRE----- 72 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC--CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccC-CcC-----
Confidence 3578999999999999999987655 67899999999999999999999999987 9999999999865 233
Q ss_pred EEEeccccCCCC---CCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH
Q 023076 159 KVRGLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 235 (287)
Q Consensus 159 ~v~i~tK~~~~~---~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~ 235 (287)
+++|+||+++.. .+.+++.+++++++||++||+||||+|++|||+.......++|++|++++++|+||+||||||++
T Consensus 73 ~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 73 EVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred cEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 788999987543 23689999999999999999999999999999876655889999999999999999999999999
Q ss_pred HHHHHHHHc-CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 236 ERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 236 ~~l~~~~~~-~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
+.++++++. ..+|+++|++||++++..+.+++++|+++||++++|+||++|
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCc
Confidence 999999875 268999999999999887778999999999999999999987
No 10
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.4e-43 Score=321.64 Aligned_cols=187 Identities=21% Similarity=0.170 Sum_probs=162.8
Q ss_pred ccccCceeeccccCCCC-------CCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEE
Q 023076 88 SLEICRVLNGMWQTSGG-------WGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKV 160 (287)
Q Consensus 88 g~~vs~lglGt~~~~~~-------~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v 160 (287)
+++||+||||||.+|+. |+.++++++.++++.|++.||||||||+.||.+|+++|++|++. .+ .++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~~--~~-----~~~ 74 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPRP--VP-----FRV 74 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhccC--Cc-----eEe
Confidence 47899999999999853 57789999999999999999999999999999999999999641 11 146
Q ss_pred EeccccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 023076 161 RGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLR 239 (287)
Q Consensus 161 ~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~ 239 (287)
+++||.. +.+++.+++++++||+|||+||||+|++|||++. .+..+++|++|++|+++||||+||||||+++++.
T Consensus 75 ~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~ 150 (292)
T PRK14863 75 TLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPV 150 (292)
T ss_pred ecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHH
Confidence 6778742 3578999999999999999999999999999763 2323679999999999999999999999999988
Q ss_pred HHHHcCCCeEEEeecCCccCCCch-HHHHHHHHHcCCeEEEcccCCCC
Q 023076 240 IILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 240 ~~~~~~~~~~~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via~spl~~G 286 (287)
++.+. .+|+++|++||++++..+ .+++++|+++||++++|+||++|
T Consensus 151 ~~~~~-~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G 197 (292)
T PRK14863 151 GVARR-FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNG 197 (292)
T ss_pred HHHhc-CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCc
Confidence 87654 489999999999998664 37999999999999999999987
No 11
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=8.5e-43 Score=314.30 Aligned_cols=180 Identities=16% Similarity=0.243 Sum_probs=158.0
Q ss_pred ccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCC
Q 023076 90 EICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP 169 (287)
Q Consensus 90 ~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~ 169 (287)
+||+||||||++++ +++.+++++|++.||||||||+.|| +|+.+|++|++.+..|+ +++|+||+++.
T Consensus 2 ~vs~lglGt~~~~~-------~~~~~~i~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-----~v~i~TK~~~~ 68 (267)
T PRK11172 2 SIPAFGLGTFRLKD-------QVVIDSVKTALELGYRAIDTAQIYD-NEAAVGQAIAESGVPRD-----ELFITTKIWID 68 (267)
T ss_pred CCCCEeeEccccCh-------HHHHHHHHHHHHcCCCEEEccchhC-CHHHHHHHHHHcCCChh-----HeEEEEEeCCC
Confidence 69999999998753 7899999999999999999999999 59999999986432233 78999997643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-C-C
Q 023076 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G-I 246 (287)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-~-~ 246 (287)
..+++.+++++++||+|||+||||+|++|||++.. ...+++|++|++++++||||+||||||+.++++++++. + .
T Consensus 69 --~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~ 146 (267)
T PRK11172 69 --NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAE 146 (267)
T ss_pred --CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCC
Confidence 56899999999999999999999999999997642 23789999999999999999999999999999998874 3 3
Q ss_pred CeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 247 ~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
+++++|++||++++ +.+++++|+++||++++|+||++|
T Consensus 147 ~~~~~Q~~~~~~~~--~~~ll~~~~~~gi~v~a~spl~~G 184 (267)
T PRK11172 147 NIATNQIELSPYLQ--NRKVVAFAKEHGIHVTSYMTLAYG 184 (267)
T ss_pred CCeEEeeecCCCCC--cHHHHHHHHHCCCEEEEECCCCCC
Confidence 68999999999875 358999999999999999999987
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-41 Score=309.24 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=166.6
Q ss_pred cceeEEecCCCccccCceeeccccCCC--CCCC-CCHHHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHHHHHhhhhcc
Q 023076 77 KQSITVSNGNDSLEICRVLNGMWQTSG--GWGR-IDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRE 151 (287)
Q Consensus 77 ~~~~~~~lG~tg~~vs~lglGt~~~~~--~~~~-~~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~ 151 (287)
|...++.++ |++||+||||||++++ .||. .+++++.++++.|++.||||||||+.||+ +|++||++++.. |
T Consensus 5 ~~~~~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~~-R- 80 (290)
T PRK10376 5 MSSGTFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHPY-P- 80 (290)
T ss_pred ccCCceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhcC-C-
Confidence 344456665 7999999999999975 3554 47889999999999999999999999976 789999999642 3
Q ss_pred CCCceEEEEEeccccCCC-------CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCC----CCCcHHHHHHHHHHHH
Q 023076 152 RPPEFLDKVRGLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLK 220 (287)
Q Consensus 152 r~~~~~~~v~i~tK~~~~-------~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~----~~~~~~e~~~aL~~l~ 220 (287)
+ +++|+||++.. +...+++.+++++++||+|||+||||+|++||++. .....+++|++|++|+
T Consensus 81 -~-----~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~ 154 (290)
T PRK10376 81 -D-----DLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQ 154 (290)
T ss_pred -C-----eEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 3 78889996421 23568999999999999999999999999988521 1123789999999999
Q ss_pred HcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 221 EEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 221 ~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
++||||+||||||++++++++.+.. +++++|++||++++. ..+++++|+++||++++|+||+++
T Consensus 155 ~~Gkir~iGvSn~~~~~l~~~~~~~-~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 155 RQGLVRHIGLSNVTPTQVAEARKIA-EIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HCCceeEEEecCCCHHHHHHHHhhC-CeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCC
Confidence 9999999999999999999988754 789999999999865 357999999999999999999854
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3e-41 Score=305.46 Aligned_cols=182 Identities=20% Similarity=0.338 Sum_probs=160.5
Q ss_pred CCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccc
Q 023076 86 NDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTK 165 (287)
Q Consensus 86 ~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (287)
++|++||+||||||+++ .+++.+++++|++.|+||||||+.|| +|+.+|++|++.+..|+ +++|+||
T Consensus 10 ~~g~~v~~lglG~~~~~-------~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~~~~~R~-----~~~i~tK 76 (275)
T PRK11565 10 QDGNVMPQLGLGVWQAS-------NEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKEASVARE-----ELFITTK 76 (275)
T ss_pred CCCCccCCcceECccCC-------HHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHHcCCCHH-----HEEEEEE
Confidence 57899999999999763 47899999999999999999999999 58889999986432333 7889999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-c
Q 023076 166 WVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-N 244 (287)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~ 244 (287)
+++ .+++.+++++++||+|||+||||+|++|||++..+.+.++|++|++|+++|+||+||||||++++++++++ .
T Consensus 77 ~~~----~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~ 152 (275)
T PRK11565 77 LWN----DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDET 152 (275)
T ss_pred ecC----cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhC
Confidence 763 25789999999999999999999999999987654478999999999999999999999999999999875 3
Q ss_pred CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 245 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 245 ~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
++++.++|++||++.+ +.+++++|+++||++++|+||++|
T Consensus 153 ~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~~G 192 (275)
T PRK11565 153 GVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLAQG 192 (275)
T ss_pred CCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCCCC
Confidence 5678999999999875 458999999999999999999876
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.5e-41 Score=304.33 Aligned_cols=188 Identities=28% Similarity=0.481 Sum_probs=159.6
Q ss_pred ceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCC--CCcHHHHHHHHhhhhccCCCceEEEEEecccc---C
Q 023076 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKW---V 167 (287)
Q Consensus 93 ~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~---~ 167 (287)
+||||||++++. ..+.+++.++++.|++.|||+||||+.| |.+|+.||++|++.+..|+ +++|+||+ .
T Consensus 1 ~l~lG~~~~~~~--~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~-----~~~i~tK~~~~~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE--RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRD-----DIFISTKVYGDG 73 (283)
T ss_dssp SBEEECTTBTTT--TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGG-----GSEEEEEEESSS
T ss_pred CEEEEccccCCC--CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccc-----cccccccccccc
Confidence 589999999753 6799999999999999999999999999 7799999999998332333 66777777 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CC
Q 023076 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI 246 (287)
Q Consensus 168 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-~~ 246 (287)
......+++.+++++++||++||+||||+|++|||+.......++|++|++|+++|+||+||||||+++.++++... .+
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 22347899999999999999999999999999999987765899999999999999999999999999999999554 47
Q ss_pred CeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCCC
Q 023076 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVNN 287 (287)
Q Consensus 247 ~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G~ 287 (287)
+|+++|++||++++..+.+++++|+++||++++|+||++|.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~ 194 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGL 194 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGC
T ss_pred cccccccccccccccccccccccccccccccccccccccCc
Confidence 89999999999977788899999999999999999999873
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=6.2e-39 Score=277.18 Aligned_cols=198 Identities=21% Similarity=0.354 Sum_probs=174.4
Q ss_pred EEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHHHHHhhhhccCCCceEE
Q 023076 81 TVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFLD 158 (287)
Q Consensus 81 ~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~~ 158 (287)
+..+|+.|+++|++.+|+|++.. |+ ...++....++.++|.|||+||-|+.||. +|+++|++|+-.+ .+|.
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~d-~~-~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p-----~lRe 75 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLND-WN-MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAP-----GLRE 75 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhhh-cc-CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcCh-----hhhh
Confidence 45577889999999999999964 53 45578889999999999999999999986 8999999998754 4555
Q ss_pred EEEeccccCC----------CCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 023076 159 KVRGLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (287)
Q Consensus 159 ~v~i~tK~~~----------~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i 228 (287)
++.|.||.+. ..++.+.++|.+++|+||+||+|||+|+++||+||+-.+ .+|+.+++..|++.||||++
T Consensus 76 kieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd-~eeVAeAf~~L~~sGKVr~f 154 (298)
T COG4989 76 KIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD-AEEVAEAFTHLHKSGKVRHF 154 (298)
T ss_pred heEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-HHHHHHHHHHHHhcCCeeee
Confidence 8888888652 135789999999999999999999999999999999887 89999999999999999999
Q ss_pred EecCCCHHHHHHHHHc-CCCeEEEeecCCccCCC-chHHHHHHHHHcCCeEEEcccCCCC
Q 023076 229 ALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 229 GvSn~~~~~l~~~~~~-~~~~~~~Q~~~n~~~~~-~~~~ll~~~~~~gi~via~spl~~G 286 (287)
|||||++.+++-+.+. ..++.+||+++|+++.. ..++.+++|+.+.|..+|||||++|
T Consensus 155 GVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG 214 (298)
T COG4989 155 GVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGG 214 (298)
T ss_pred ecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCC
Confidence 9999999999998765 45689999999998753 3458999999999999999999998
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=7.9e-37 Score=277.06 Aligned_cols=199 Identities=20% Similarity=0.203 Sum_probs=173.1
Q ss_pred eEEecCCCccccCceeeccccCCCCC-CCCCHHHHHHHHHHHHHcCCCEEecCCCC--CCcHHHHHHHHhhhhccCCCce
Q 023076 80 ITVSNGNDSLEICRVLNGMWQTSGGW-GRIDRDDAVDAMLRYADAGLTTFDMADHY--GPAEDLYGIFINRVRRERPPEF 156 (287)
Q Consensus 80 ~~~~lG~tg~~vs~lglGt~~~~~~~-~~~~~~~a~~~l~~A~~~Gin~fDTA~~Y--G~sE~~lG~al~~~~r~r~~~~ 156 (287)
.||++|+||.++|.||||||++.-.| +..|++.+.++|++|++.||||||||..| |.+|..||++|++..|+
T Consensus 2 lyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Re----- 76 (391)
T COG1453 2 LYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYRE----- 76 (391)
T ss_pred chhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccc-----
Confidence 58899999999999999999998655 45899999999999999999999999999 99999999999985544
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCc---HHHHHHHHHHHHHcCCccEEEecCC
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTDLKEEGKIKTVALTNF 233 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~---~~e~~~aL~~l~~~G~Ir~iGvSn~ 233 (287)
+++++||....+ --+++.+++-++++|++||+||+|+|+||..+.+..+ ...+++.++++|++|+||++|+|.|
T Consensus 77 --kv~LaTKlp~~~-~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfH 153 (391)
T COG1453 77 --KVKLATKLPSWP-VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFH 153 (391)
T ss_pred --eEEEEeecCCcc-ccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCC
Confidence 899999975322 4588999999999999999999999999998763211 1137899999999999999999999
Q ss_pred C-HHHHHHHHHcCCCeEEEeecCCccCCCchH--HHHHHHHHcCCeEEEcccCCCCC
Q 023076 234 D-TERLRIILENGIPVVSNQVQHSVVDMRPQQ--KMAELCQLTGVKLITSLPFLVNN 287 (287)
Q Consensus 234 ~-~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~--~ll~~~~~~gi~via~spl~~G~ 287 (287)
+ .+.+.+++... +++++|++||.++...+. +.+++|.++|++|+.++|+.+|+
T Consensus 154 gs~e~~~~iv~a~-~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~ 209 (391)
T COG1453 154 GSTEVFKEIVDAY-PWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGG 209 (391)
T ss_pred CCHHHHHHHHhcC-CcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCC
Confidence 6 56677777654 799999999999876653 89999999999999999999996
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.2e-34 Score=252.52 Aligned_cols=199 Identities=21% Similarity=0.273 Sum_probs=171.1
Q ss_pred eEEecCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHHHHHhhhhccCCCceE
Q 023076 80 ITVSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYADAGLTTFDMADHYGP--AEDLYGIFINRVRRERPPEFL 157 (287)
Q Consensus 80 ~~~~lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG~al~~~~r~r~~~~~ 157 (287)
-++.+|+||++||+||||...+++.|+..++++....+..|+.+|||+|||++.||. +|+.+|.++++.||+
T Consensus 23 eyR~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~------ 96 (342)
T KOG1576|consen 23 EYRQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPRE------ 96 (342)
T ss_pred HHhhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChh------
Confidence 388899999999999999999988888888899888888899999999999999986 899999999998887
Q ss_pred EEEEeccccCCC------CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC---CCcHHHHHHHHHHHHHcCCccEE
Q 023076 158 DKVRGLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDALNHLTDLKEEGKIKTV 228 (287)
Q Consensus 158 ~~v~i~tK~~~~------~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~---~~~~~e~~~aL~~l~~~G~Ir~i 228 (287)
..+|+||.+.. .++++++.+++++++||+||++||+|++++|+.+.. ...+.|++.+|+++|++||||+|
T Consensus 97 -aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~Rfi 175 (342)
T KOG1576|consen 97 -AYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFI 175 (342)
T ss_pred -heeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEe
Confidence 77889997532 268999999999999999999999999999997654 22367999999999999999999
Q ss_pred EecCCCHHHHHHHHHcC-CCeEEEe--ecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 229 ALTNFDTERLRIILENG-IPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 229 GvSn~~~~~l~~~~~~~-~~~~~~Q--~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
|++.++.+.+.++.+.+ -..+++- ..|++.+ ...-..++..+++|++|+.-++++.|
T Consensus 176 Gitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d-~tLl~~~~~~~sk~vgVi~Asalsmg 235 (342)
T KOG1576|consen 176 GITGYPLDVLTECAERGKGRLDVVLSYCRYTLND-NTLLRYLKRLKSKGVGVINASALSMG 235 (342)
T ss_pred eecccchHHHHHHHhcCCCceeeehhhhhhcccc-HHHHHHHHHHHhcCceEEehhhHHHH
Confidence 99999999999998864 1355544 6677644 23337788899999999999998865
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.03 E-value=1.4e-05 Score=69.68 Aligned_cols=72 Identities=24% Similarity=0.363 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
+.+.|..||+++.+|+|..||+|.|+..++++++.. .+.|.++|+++.-.+.-|. ++.++|.+++|.+...+
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvPp-dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVPP-DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCCH-HHHHHhhhcceeeeecC
Confidence 457999999999999999999999999999999985 6889999999887665444 99999999999987654
No 19
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.94 E-value=4.1 Score=36.32 Aligned_cols=111 Identities=11% Similarity=0.020 Sum_probs=79.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 168 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
++....+.+...+..+-..+-+++++|-|=.+.++....++..+++++.++|.++|.+ -+=+++-++...+++.+.|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~G-- 144 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEAG-- 144 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--
Confidence 3345678888888888899999999999988888888788899999999999999975 4557777888888887765
Q ss_pred eEEEeecCCccCC---CchHHHHHHHHH-cCCeEEEcc
Q 023076 248 VVSNQVQHSVVDM---RPQQKMAELCQL-TGVKLITSL 281 (287)
Q Consensus 248 ~~~~Q~~~n~~~~---~~~~~ll~~~~~-~gi~via~s 281 (287)
+++++.--+++-. -...+.++..++ .++.|++-.
T Consensus 145 ~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIvea 182 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDA 182 (250)
T ss_pred CCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeC
Confidence 4444332222211 012355666666 488888654
No 20
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.66 E-value=9.4 Score=34.05 Aligned_cols=111 Identities=11% Similarity=0.010 Sum_probs=79.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 168 PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 168 ~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
++....+.+...+..+-..+-+++++|-|=.+.++..-.++..+++++.++|.++|.+ -+=+++-++...+++.+.|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~G-- 144 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDAG-- 144 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHcC--
Confidence 3345678888888888899999999999988888887778899999999999999975 4557777888888887765
Q ss_pred eEEEeecCCccCC---CchHHHHHHHHH-cCCeEEEcc
Q 023076 248 VVSNQVQHSVVDM---RPQQKMAELCQL-TGVKLITSL 281 (287)
Q Consensus 248 ~~~~Q~~~n~~~~---~~~~~ll~~~~~-~gi~via~s 281 (287)
+++++.--+++-. -...++++..++ .++.|++-.
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~eg 182 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDA 182 (248)
T ss_pred CCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeC
Confidence 4444332233211 112355555555 478887643
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.35 E-value=7.7 Score=35.56 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCc-HHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA-EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~s-E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (287)
+.++..+.++.+.+.|++.|+.-- |.. +.. -+.++..... +- ++.+.-+.. ..++.+...+- -+.|+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d-~~~v~~lr~~----~g-~~~l~vD~n---~~~~~~~A~~~-~~~l~ 201 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDD-IERIRAIREA----AP-DARLRVDAN---QGWTPEEAVEL-LRELA 201 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhH-HHHHHHHHHh----CC-CCeEEEeCC---CCcCHHHHHHH-HHHHH
Confidence 557777888888999999998742 321 111 1222221110 00 111222211 13455443322 23444
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-chHH
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQK 265 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~~~~ 265 (287)
.+ ++.++..|-+. +-++.+.++++...|. ..|=+-++.+.++++++.+ .++++|+..+.+=.- .-.+
T Consensus 202 ~~-----~l~~iEeP~~~-----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 202 EL-----GVELIEQPVPA-----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGG-AYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred hc-----CCCEEECCCCC-----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEeccccCCHHHHHH
Confidence 44 45555655432 1355567788877666 4455668899999998865 478888886653211 1238
Q ss_pred HHHHHHHcCCeEEEcc
Q 023076 266 MAELCQLTGVKLITSL 281 (287)
Q Consensus 266 ll~~~~~~gi~via~s 281 (287)
+..+|+++|+.++..+
T Consensus 271 ~~~~a~~~gi~~~~~~ 286 (316)
T cd03319 271 IADLARAAGLKVMVGC 286 (316)
T ss_pred HHHHHHHcCCCEEEEC
Confidence 8999999999998754
No 22
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=89.51 E-value=2.2 Score=37.74 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+-++ .|..+|+++|++-..-.+... +...+.++.++++++.+ .++...++....+.++.+.+.++ +.
T Consensus 15 ~~s~e~~~~i~~-~L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~--~~ 90 (265)
T cd03174 15 TFSTEDKLEIAE-ALDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGV--DE 90 (265)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCc--CE
Confidence 456666665555 477899999998765543221 22345777888899888 67776777666788888888763 44
Q ss_pred EeecCCccC--------CC------chHHHHHHHHHcCCeEEEc
Q 023076 251 NQVQHSVVD--------MR------PQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 251 ~Q~~~n~~~--------~~------~~~~ll~~~~~~gi~via~ 280 (287)
+++.+..-+ +. .-.+.+++++++|+.+...
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 444443321 11 1126778899999876644
No 23
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=88.89 E-value=2.3 Score=36.47 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=71.3
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH-cCCCeEEEeecCCccCC
Q 023076 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE-NGIPVVSNQVQHSVVDM 260 (287)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~-~~~~~~~~Q~~~n~~~~ 260 (287)
+++.|....-+.+|.+.+..--.. .....+.|+++.+-|+---|++.||..+..+--+- .|--|..-+.+|+..+.
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 455666666667777766532111 22344557788888887789999999888776554 56557778888887664
Q ss_pred C-----chHHHHHHHHHcCCeEEEcccCCCC
Q 023076 261 R-----PQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 261 ~-----~~~~ll~~~~~~gi~via~spl~~G 286 (287)
. .-.+..++|++.|+.+.-..++..+
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~ 171 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGG 171 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCC
Confidence 2 2348899999999999987777654
No 24
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=87.68 E-value=1.3 Score=42.99 Aligned_cols=129 Identities=18% Similarity=0.144 Sum_probs=81.2
Q ss_pred HHHHHHcCCCEE--ecCCC--C--------CCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHH-----
Q 023076 117 MLRYADAGLTTF--DMADH--Y--------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR----- 179 (287)
Q Consensus 117 l~~A~~~Gin~f--DTA~~--Y--------G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~----- 179 (287)
++..-+.|+..+ =||-. | |..|.+ ..+-++.... .+.-++++++-.+.... -.|..+.
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~-~~aark~f~~---~L~G~~~lTaGLGGMgG-AQPlA~~mag~v 183 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETF-AELARQHFGG---SLKGKWVLTAGLGGMGG-AQPLAVTMNGGV 183 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHH-HHHHHHhcCC---CCceeEEEEeCCCcccc-ccHHHHHHcCce
Confidence 445556777755 35443 3 235665 3444432222 45557777776553321 1111110
Q ss_pred -----HHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEE--Ee
Q 023076 180 -----ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--NQ 252 (287)
Q Consensus 180 -----~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~--~Q 252 (287)
-.-.+.-+|+.+.|+|.+ .++++|+++..++.+++|+..+||+-..-.+.++++++.++.|++ -|
T Consensus 184 ~i~vEvd~~ri~kR~~~gyld~~--------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQ 255 (545)
T TIGR01228 184 SIAVEVDESRIDKRLETKYCDEQ--------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQ 255 (545)
T ss_pred EEEEEECHHHHHHHHhcCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCC
Confidence 011334468889999987 345899999999999999999999999889999999998865555 46
Q ss_pred ec-CCcc
Q 023076 253 VQ-HSVV 258 (287)
Q Consensus 253 ~~-~n~~ 258 (287)
.. ++|+
T Consensus 256 TSaHdp~ 262 (545)
T TIGR01228 256 TSAHDPL 262 (545)
T ss_pred CcccCcc
Confidence 55 3444
No 25
>PRK05414 urocanate hydratase; Provisional
Probab=87.54 E-value=1.4 Score=42.98 Aligned_cols=129 Identities=16% Similarity=0.112 Sum_probs=81.7
Q ss_pred HHHHHHcCCCEE--ecCCC--C--------CCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHH-----
Q 023076 117 MLRYADAGLTTF--DMADH--Y--------GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR----- 179 (287)
Q Consensus 117 l~~A~~~Gin~f--DTA~~--Y--------G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~----- 179 (287)
++..-+.|+..+ =||-. | |..|.++ .+-++.... .+.-++++++-.+.... -.|..+.
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~-~a~rk~f~g---~L~G~~~lTaGLGGMgG-AQPlA~~mag~v 192 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFA-EAARQHFGG---DLAGRLVLTAGLGGMGG-AQPLAATMAGAV 192 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHH-HHHHHhcCC---CCceeEEEEecCCcccc-ccHHHHHhcCce
Confidence 444556777755 35543 3 2356654 333332212 45567788776653321 1111110
Q ss_pred -----HHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEE--Ee
Q 023076 180 -----ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS--NQ 252 (287)
Q Consensus 180 -----~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~--~Q 252 (287)
-.-.+.-+|+.+.|+|.+ .++++|+++..++.+++|+..+||+-..-++.++++++.++.|++ -|
T Consensus 193 ~i~vEvd~~ri~kR~~~gyld~~--------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQ 264 (556)
T PRK05414 193 CLAVEVDESRIDKRLRTGYLDEK--------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQ 264 (556)
T ss_pred EEEEEECHHHHHHHHhCCcceeE--------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcC
Confidence 011334468899999987 345899999999999999999999999889999999998865555 46
Q ss_pred ec-CCcc
Q 023076 253 VQ-HSVV 258 (287)
Q Consensus 253 ~~-~n~~ 258 (287)
.. ++|+
T Consensus 265 TSaHdp~ 271 (556)
T PRK05414 265 TSAHDPL 271 (556)
T ss_pred ccccCcc
Confidence 55 3444
No 26
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=86.35 E-value=17 Score=32.35 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=69.1
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeE
Q 023076 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 249 (287)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~ 249 (287)
....+.+...+..+-..+-+++++|-|=.+.++..-.++..|++++-++|+++|-+ -+=-++-++-..+++.+.| +.
T Consensus 70 aGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~-VlPY~~~D~v~akrL~d~G--ca 146 (247)
T PF05690_consen 70 AGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEDAG--CA 146 (247)
T ss_dssp TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E-EEEEE-S-HHHHHHHHHTT---S
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE-EeecCCCCHHHHHHHHHCC--CC
Confidence 34668888888889999999999998887777766667889999999999999954 3444555777777777755 55
Q ss_pred EEeecCCccCC----CchHHHHHHHHHcCCeEEEcc
Q 023076 250 SNQVQHSVVDM----RPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 250 ~~Q~~~n~~~~----~~~~~ll~~~~~~gi~via~s 281 (287)
+++.--+|+=. .....+-..+++.+|+||.=.
T Consensus 147 avMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 147 AVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp EBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred EEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 55655555421 112244455667788887643
No 27
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=85.53 E-value=8.8 Score=35.03 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q 252 (287)
++.+... .+-+.|.++|+++|++-.++.|.. .+...+.++.+..+.+...++...+. .+...++.+++.|.+...+-
T Consensus 23 ~s~e~k~-~ia~~L~~~Gv~~IEvgsf~~p~~-~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTADKI-ALIDRLSAAGLSYIEVASFVSPKW-VPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHHHH-HHHHHHHHcCCCEEEeCCCcCccc-ccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 4444444 455568899999999975555531 11223345566666554456666655 58888999998875543333
Q ss_pred ecCCcc------CCCc------hHHHHHHHHHcCCeEE
Q 023076 253 VQHSVV------DMRP------QQKMAELCQLTGVKLI 278 (287)
Q Consensus 253 ~~~n~~------~~~~------~~~ll~~~~~~gi~vi 278 (287)
+..|.. .... -.+.+++++++|+.+.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 333321 1111 1268899999999875
No 28
>PRK08609 hypothetical protein; Provisional
Probab=85.40 E-value=27 Score=35.16 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCCEEecCCCC-------CCcHHHHHHH---HhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHH
Q 023076 113 AVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIF---INRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (287)
Q Consensus 113 a~~~l~~A~~~Gin~fDTA~~Y-------G~sE~~lG~a---l~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (287)
..++++.|.+.|+.+|=.++++ |.....+-+. ++..++.-. .+ ++....-.. +.++...+-.
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~-~i--~Il~GiEv~-----i~~~g~~d~~ 422 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYP-EI--DILSGIEMD-----ILPDGSLDYD 422 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcC-CC--eEEEEEEEe-----ecCCcchhhc
Confidence 4559999999999999777764 2222222222 222222111 11 233222221 1111112222
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC------CC-----HHHHHHH-HHcCCCeEE
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD-----TERLRII-LENGIPVVS 250 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn------~~-----~~~l~~~-~~~~~~~~~ 250 (287)
+..|+. .||+ +..+|++.. .+ .++.++.+.++.+.|.+.-||=-. +. .+.+.++ .+.|..+.+
T Consensus 423 ~~~L~~--~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEI 497 (570)
T PRK08609 423 DEVLAE--LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALEL 497 (570)
T ss_pred HHHHHh--hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEE
Confidence 334444 4666 677897532 22 567888899999999988887443 11 1233333 445654444
Q ss_pred EeecCCccCCCchHHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~~~~~~~~ll~~~~~~gi~vi 278 (287)
| -+++.......++..|.+.|+.++
T Consensus 498 N---a~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 498 N---ANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred c---CCccccCccHHHHHHHHHcCCEEE
Confidence 4 443333455689999999999765
No 29
>PRK08392 hypothetical protein; Provisional
Probab=84.52 E-value=26 Score=30.29 Aligned_cols=148 Identities=16% Similarity=0.186 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCC--CcHHHHHHHHh---hhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 112 DAVDAMLRYADAGLTTFDMADHYG--PAEDLYGIFIN---RVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 112 ~a~~~l~~A~~~Gin~fDTA~~YG--~sE~~lG~al~---~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
...+.++.|.+.|++.|=.+++.- ..+. +-..++ ..... . .+ ++....-....+ +. .+..++.+
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~-~~~y~~~i~~l~~~-~-~i--~il~GiE~~~~~-----~~-~~~~~~~~ 83 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSK-FNAYINEIRQWGEE-S-EI--VVLAGIEANITP-----NG-VDITDDFA 83 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhh-HHHHHHHHHHHhhc-c-Cc--eEEEeEEeeecC-----Cc-chhHHHHH
Confidence 366789999999999986655531 1111 122222 22111 1 11 233222221111 11 12333444
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC-------C-HHHH----HHHHHcCCCeEEEeec
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-------D-TERL----RIILENGIPVVSNQVQ 254 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~-------~-~~~l----~~~~~~~~~~~~~Q~~ 254 (287)
++ .||+ +..+|.+.. .+..++-.+.+.++.+.|.+.-+|=-.. . .+.+ +.+.++|..+.+|-.
T Consensus 84 ~~--~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt~- 158 (215)
T PRK08392 84 KK--LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISSR- 158 (215)
T ss_pred hh--CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeCC-
Confidence 43 4555 567895432 2225566778888889998887774221 1 1232 333446766766642
Q ss_pred CCccCCCchHHHHHHHHHcCCeEEE
Q 023076 255 HSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 255 ~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
+ +.+..++++.|++.|+.++.
T Consensus 159 ~----~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 159 Y----RVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred C----CCCCHHHHHHHHHcCCEEEE
Confidence 2 23556899999999987653
No 30
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=82.24 E-value=3.1 Score=40.11 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEE
Q 023076 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 251 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~ 251 (287)
-+||.+.|+|.. .+..+|++.-.++..++|+-.+||+-..-++.++++++.++.|+++
T Consensus 204 ~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDEI--------AETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 368889999976 3358999999999999999999999998899999999988777765
No 31
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=82.04 E-value=43 Score=31.07 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCC-----cHHH--HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGP-----AEDL--YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~-----sE~~--lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (287)
+.++..+.++.+.+.|++.|-.--..+. -+.. +=+++++.-.+ ++ .+.+ .. ...++.+...+-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~---~~--~l~v--Da---N~~~~~~~a~~~ 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGP---DV--DLMV--DA---NGRWDLAEAIRL 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCC---CC--EEEE--EC---CCCCCHHHHHHH
Confidence 4577777888888999998865322221 1111 11233321111 11 1222 21 124565554433
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC
Q 023076 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM 260 (287)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~ 260 (287)
+ ++|. ..++.+++.|-+. +.++.+.++++.-.+. ..|=|.++++.++++++.+ .++++|+.....-.
T Consensus 209 ~----~~l~--~~~i~~iEqP~~~-----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GG 276 (357)
T cd03316 209 A----RALE--EYDLFWFEEPVPP-----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPDVTKVGG 276 (357)
T ss_pred H----HHhC--ccCCCeEcCCCCc-----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhC-CCCEEecCccccCC
Confidence 3 3332 2355566766432 2355567787775555 4555667899999999876 47888888765422
Q ss_pred Cc-hHHHHHHHHHcCCeEEEcc
Q 023076 261 RP-QQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 261 ~~-~~~ll~~~~~~gi~via~s 281 (287)
-. -.++...|+++|+.++..+
T Consensus 277 i~~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 277 ITEAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHHHcCCeEeccC
Confidence 12 2389999999999987654
No 32
>PRK14017 galactonate dehydratase; Provisional
Probab=81.29 E-value=49 Score=31.24 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCC-----CCCC----c--HHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMAD-----HYGP----A--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~-----~YG~----s--E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (287)
+.++..+.+..+.+.|++.|=.-- .++. . .+.+ +++++.-.+ ++ ++.+-. + ..++.+.
T Consensus 124 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i-~avr~~~g~---~~--~l~vDa----N-~~w~~~~ 192 (382)
T PRK14017 124 RPADVAEAARARVERGFTAVKMNGTEELQYIDSPRKVDAAVARV-AAVREAVGP---EI--GIGVDF----H-GRVHKPM 192 (382)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHHHHHHHHHH-HHHHHHhCC---CC--eEEEEC----C-CCCCHHH
Confidence 456677778888899999886521 1110 0 1111 222221111 11 122211 1 2456554
Q ss_pred HHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCC
Q 023076 178 VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHS 256 (287)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n 256 (287)
..+ -++.|. -+++.++..|-+.. -++.+.+|++...+. ..|=|.++...++.+++.+ -++++|+..+
T Consensus 193 A~~----~~~~l~--~~~~~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~ 260 (382)
T PRK14017 193 AKV----LAKELE--PYRPMFIEEPVLPE-----NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLS 260 (382)
T ss_pred HHH----HHHhhc--ccCCCeEECCCCcC-----CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCcc
Confidence 332 233342 34667777765432 245678888877665 6677788999999999876 4788888876
Q ss_pred ccCC-CchHHHHHHHHHcCCeEEEccc
Q 023076 257 VVDM-RPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 257 ~~~~-~~~~~ll~~~~~~gi~via~sp 282 (287)
.+=. ..-..+.+.|+++||.++..+.
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 5421 1223899999999999987653
No 33
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=80.89 E-value=0.72 Score=43.37 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=38.1
Q ss_pred cCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCe
Q 023076 222 EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (287)
Q Consensus 222 ~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~ 276 (287)
-|+||++||--|+++++.++....-.-++.+.+..++-...+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3999999999999999999875321222233333333233455899999999985
No 34
>PRK06740 histidinol-phosphatase; Validated
Probab=80.58 E-value=49 Score=30.78 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCccceEEeecCCC---CCCc-------------HHHHHHHHHHHHHcCCccEEEecC------CCH---
Q 023076 181 SIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALTN------FDT--- 235 (287)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~---~~~~-------------~~e~~~aL~~l~~~G~Ir~iGvSn------~~~--- 235 (287)
.+++.|+....||+ +..+|+.+. ..+. .++-.+.+.++.+.|++..||=-. +.+
T Consensus 157 ~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~~ 235 (331)
T PRK06740 157 ELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDEN 235 (331)
T ss_pred HHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcchh
Confidence 45556666677776 677897531 1111 112346777888999998888332 111
Q ss_pred ---HHHHH----HHHcCCCeEEEee-cC--CccCCCchHHHHHHHHHcCCeEEE
Q 023076 236 ---ERLRI----ILENGIPVVSNQV-QH--SVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 236 ---~~l~~----~~~~~~~~~~~Q~-~~--n~~~~~~~~~ll~~~~~~gi~via 279 (287)
+.+++ +.+.+..+.+|-. .+ ..-+..+...+++.|++.|+.++.
T Consensus 236 ~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 236 EQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 23333 3345777777764 12 212223555899999999998764
No 35
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=79.77 E-value=4.8 Score=39.43 Aligned_cols=130 Identities=16% Similarity=0.152 Sum_probs=70.7
Q ss_pred HHHHHHHcCCCEE--ecCCCC---CC-------cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHH-----
Q 023076 116 AMLRYADAGLTTF--DMADHY---GP-------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV----- 178 (287)
Q Consensus 116 ~l~~A~~~Gin~f--DTA~~Y---G~-------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i----- 178 (287)
-++...+.|+..+ =||-.| |. .|.+ ..+-++.... .+.-++++++-.+.... ..|..+
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~-~~aark~~g~---~L~Gk~~lTaGLGGMgG-AQplA~~m~g~ 181 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETF-LNAARKHFGG---DLAGKLFLTAGLGGMGG-AQPLAATMAGG 181 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHH-HHHHHHHSTT---S-TT-EEEEE--STTCC-HHHHHHHHTT-
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHH-HHHHHHhcCC---CCcceEEEEeccccccc-chHHHHHhcCc
Confidence 4455667888766 355443 32 4554 3443432222 45557777776654321 001000
Q ss_pred -----HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe--EEE
Q 023076 179 -----RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV--VSN 251 (287)
Q Consensus 179 -----~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~--~~~ 251 (287)
+-.-++.-+|+.+.|+|.+ .++++|+++..++.+++|+..+||+-..-.+.++++++.++.| ..-
T Consensus 182 v~l~vEvd~~ri~kR~~~g~ld~~--------~~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tD 253 (546)
T PF01175_consen 182 VGLIVEVDPSRIEKRLEQGYLDEV--------TDDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTD 253 (546)
T ss_dssp EEEEEES-HHHHHHHHHTTSSSEE--------ESSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE--
T ss_pred eEEEEEECHHHHHHHHhCCCeeEE--------cCCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccC
Confidence 0011344468888999988 3358999999999999999999999988889999999887544 455
Q ss_pred eec-CCcc
Q 023076 252 QVQ-HSVV 258 (287)
Q Consensus 252 Q~~-~n~~ 258 (287)
|.. ++|+
T Consensus 254 QTS~Hdp~ 261 (546)
T PF01175_consen 254 QTSAHDPL 261 (546)
T ss_dssp -SSTT-TT
T ss_pred CCcccccc
Confidence 766 3454
No 36
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=79.20 E-value=56 Score=30.62 Aligned_cols=145 Identities=11% Similarity=0.033 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (287)
+.++..+.++.+.+.|++.|=.-- .+.+ +++++.-.+ ++ .+.+- .+ ..++++...+-+ +.
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiKv-----~~~v-~avre~~G~---~~--~l~vD----aN-~~w~~~~A~~~~----~~ 185 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQL-----PKLF-EAVREKFGF---EF--HLLHD----VH-HRLTPNQAARFG----KD 185 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeCH-----HHHH-HHHHhccCC---Cc--eEEEE----CC-CCCCHHHHHHHH----HH
Confidence 445666777888899999874311 2222 233321111 11 12221 11 245666543333 33
Q ss_pred cCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCch-HHH
Q 023076 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKM 266 (287)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~-~~l 266 (287)
|. -++++++..|-+. +-++.+.+|++...+. +.|=|-++...++.+++.+ .++++|+....+-.-.+ .++
T Consensus 186 l~--~~~l~~iEeP~~~-----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~-a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 186 VE--PYRLFWMEDPTPA-----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQER-LIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred hh--hcCCCEEECCCCc-----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhC-CCCEEecCccccCCHHHHHHH
Confidence 42 3477788877542 2356678888887665 6777888999999998876 48888888765422222 289
Q ss_pred HHHHHHcCCeEEEcc
Q 023076 267 AELCQLTGVKLITSL 281 (287)
Q Consensus 267 l~~~~~~gi~via~s 281 (287)
.+.|+++|+.+...+
T Consensus 258 a~~A~~~gi~~~~h~ 272 (361)
T cd03322 258 ADLASLYGVRTGWHG 272 (361)
T ss_pred HHHHHHcCCeeeccC
Confidence 999999999998654
No 37
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=77.86 E-value=27 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=58.2
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCch-HHHHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQ 271 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~-~~ll~~~~ 271 (287)
.++.++..|-+.. -++.+.+|.+...+. +.+=|.++.+.+.++++.+ .++++|+..+.+-.-.+ .++..+|+
T Consensus 120 ~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPD-----DLEGYAALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCcc-----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEecCccccCCHHHHHHHHHHHH
Confidence 5777788775432 245567777777665 4455667888887877765 47888888765422122 38889999
Q ss_pred HcCCeEEEcccCC
Q 023076 272 LTGVKLITSLPFL 284 (287)
Q Consensus 272 ~~gi~via~spl~ 284 (287)
++|+.++..+.+.
T Consensus 194 ~~gi~~~~~~~~~ 206 (229)
T cd00308 194 AFGIRVMVHGTLE 206 (229)
T ss_pred HcCCEEeecCCCC
Confidence 9999999877643
No 38
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=77.70 E-value=28 Score=31.07 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecC-------CCCCCcHHHHHHHHHHHHHc-CCccEEEec---CCCHHHHHH
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRI 240 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p-------~~~~~~~~e~~~aL~~l~~~-G~Ir~iGvS---n~~~~~l~~ 240 (287)
.++.+...+-+ +.|.++|+++|++-+.... .+.. ...++.++.+++. +.++...++ ..+.+.++.
T Consensus 18 ~~~~~~k~~i~-~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 93 (263)
T cd07943 18 QFTLEQVRAIA-RALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKM 93 (263)
T ss_pred ecCHHHHHHHH-HHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhccCCEEEEEecCCccCHHHHHH
Confidence 34555544444 4488888888888754211 0111 1234455555332 345655554 334666777
Q ss_pred HHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 241 ILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 241 ~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
+.+.+++. +.+..+.-+...-.+.+++++++|+.+..
T Consensus 94 a~~~g~~~--iri~~~~s~~~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 94 AADLGVDV--VRVATHCTEADVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred HHHcCCCE--EEEEechhhHHHHHHHHHHHHHCCCeEEE
Confidence 77665433 33332221111233677888888876543
No 39
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=75.11 E-value=37 Score=30.53 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+-++ .|.++|++.|.+-. |... .+.++..+.+.+.++ .+-.+....+.+.++.+.+.|++...
T Consensus 18 ~~s~~~k~~i~~-~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAK-ALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVD 89 (262)
T ss_pred CCCHHHHHHHHH-HHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEE
Confidence 345555554444 58999998888873 4322 233444455544443 34455667788899999988765433
Q ss_pred EeecCCcc------CCCch------HHHHHHHHHcCCeEEEc
Q 023076 251 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLITS 280 (287)
Q Consensus 251 ~Q~~~n~~------~~~~~------~~ll~~~~~~gi~via~ 280 (287)
+-+..|.. .+..+ .+.+++++++|+.+...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 33333221 11121 15668889999876543
No 40
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=74.61 E-value=62 Score=28.72 Aligned_cols=152 Identities=9% Similarity=0.050 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHH--HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDL--YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~--lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
+.++..+.++.+.+.|++.|..--. .+.++- .=+++++.-.+ ++ .+.+-. ...++.+...+-++ .|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg-~~~~~d~~~v~~vr~~~g~---~~--~l~vDa-----n~~~~~~~a~~~~~-~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVG-RDPARDVAVVAALREAVGD---DA--ELRVDA-----NRGWTPKQAIRALR-AL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecC-CCHHHHHHHHHHHHHhcCC---CC--EEEEeC-----CCCcCHHHHHHHHH-HH
Confidence 3466677888888999998865321 111221 11233321111 11 122211 12455555444333 33
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-chH
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQ 264 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~~~ 264 (287)
+.+ ++.+++.|-+.. -++.+.++++.-.+. +.|=+-++.+.+.++++.+ .++++|+..+..-.- .-.
T Consensus 153 ~~~-----~i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k~~~~GGi~~~~ 221 (265)
T cd03315 153 EDL-----GLDYVEQPLPAD-----DLEGRAALARATDTPIMADESAFTPHDAFRELALG-AADAVNIKTAKTGGLTKAQ 221 (265)
T ss_pred Hhc-----CCCEEECCCCcc-----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEecccccCHHHHH
Confidence 444 455567664322 345567777776555 4555667899999988765 478888887754221 223
Q ss_pred HHHHHHHHcCCeEEEcccC
Q 023076 265 KMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 265 ~ll~~~~~~gi~via~spl 283 (287)
++...|+++|+.++..+.+
T Consensus 222 ~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 222 RVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred HHHHHHHHcCCcEEecCcc
Confidence 8899999999999876543
No 41
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=74.23 E-value=41 Score=30.23 Aligned_cols=104 Identities=7% Similarity=0.027 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC-----cHHHHHHHHHHHHHcCCccEEEecCCC---HHHHHHHHH
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 243 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~-----~~~e~~~aL~~l~~~G~Ir~iGvSn~~---~~~l~~~~~ 243 (287)
.++.+...+- -+.|.++|+|+|++-+......... ...+.++.+.+..+ +..+..+++... .+.++.+.+
T Consensus 16 ~f~~~~~~~i-a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKAI-YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHHH-HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 5666665544 4459999999999976543221100 01355555555443 346666665443 566777666
Q ss_pred cCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 244 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 244 ~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+++..-+....+-+ ..-.+.+++++++|+.+..
T Consensus 94 ~gv~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 94 SVVDMIRVAFHKHEF--DEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred CCcCEEEEecccccH--HHHHHHHHHHHHCCCeEEE
Confidence 554433333333321 1223788888889886553
No 42
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=74.02 E-value=49 Score=29.47 Aligned_cols=103 Identities=15% Similarity=0.087 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEE-eecCCCCC----CcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSN----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~----~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
.+.+.+.+..++.+ .-|-|+||+=. --+|+... ...+.....++.+++.-.+ -|-+-+++++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 46667766666554 56899999963 34454311 1133455666677665333 37888999999999999873
Q ss_pred eEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 248 ~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
..+|-+. ..+. ..++++.++++|..++.+..
T Consensus 98 ~iINdis--~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 DIINDVS--GGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred CEEEeCC--CCCC--ChHHHHHHHHcCCCEEEECc
Confidence 3333332 2211 15889999999999888753
No 43
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=73.38 E-value=67 Score=30.93 Aligned_cols=107 Identities=9% Similarity=0.046 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENG 245 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~------G~Ir~iGvSn~~~~~l~~~~~~~ 245 (287)
.++++...+.+.+ |++..-+ +++ ++..|-+..+ .++.++.+.+|++. ..=-..+=|.++.+.+.++++.+
T Consensus 244 ~~~~~~ai~~l~~-l~~~~~~-~~~-~iEqPv~~~d-~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~ 319 (408)
T TIGR01502 244 GVDIKAMADYIQT-LAEAAKP-FHL-RIEGPMDVGS-RQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK 319 (408)
T ss_pred CCCHHHHHHHHHH-HHHhCcc-CCe-EEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC
Confidence 4566655544432 2221111 345 7787764332 24567777777766 33345666778899999999876
Q ss_pred CCeEEEeecCCccCCCc-hHHHHHHHHHcCCeEEEcccC
Q 023076 246 IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 246 ~~~~~~Q~~~n~~~~~~-~~~ll~~~~~~gi~via~spl 283 (287)
-.+++|+..+-+-.-. -.++.++|+++||.+..-+..
T Consensus 320 -a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 320 -AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred -CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 4788888877542222 238999999999999875443
No 44
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=73.25 E-value=75 Score=29.09 Aligned_cols=181 Identities=13% Similarity=0.127 Sum_probs=88.9
Q ss_pred eeeccccCCCCC--CCCCHHHHHHHHHHHH-HcCCCEEecCCCCCCcH-----HHHHHHHhhhhccCCCceEEEEEeccc
Q 023076 94 VLNGMWQTSGGW--GRIDRDDAVDAMLRYA-DAGLTTFDMADHYGPAE-----DLYGIFINRVRRERPPEFLDKVRGLTK 165 (287)
Q Consensus 94 lglGt~~~~~~~--~~~~~~~a~~~l~~A~-~~Gin~fDTA~~YG~sE-----~~lG~al~~~~r~r~~~~~~~v~i~tK 165 (287)
|.||.|.-.. + ...+.++..+.+...+ ..|.+.+|--..|+..+ ..+-++|+.+..+.. .+...+.+.
T Consensus 72 iS~GG~~g~~-~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp-- 147 (294)
T cd06543 72 VSFGGASGTP-LATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP-DLKISFTLP-- 147 (294)
T ss_pred EEecCCCCCc-cccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC-CcEEEEecC--
Confidence 5666654321 2 1234555555555555 45999999877776421 345777877665543 333333222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHcCC--CccceEEeecCCC--CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 023076 166 WVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (287)
Q Consensus 166 ~~~~~~~~~~~~i~~~le~SL~rLg~--dyiDl~~lH~p~~--~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (287)
.. +...+++.+ .+-+..+..|+ |+|.+.-+-.-.. ...--..+..+.+.++.+=+--+=+ ++..++-..
T Consensus 148 ~~--p~gl~~~g~--~~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~~~~~~~ 220 (294)
T cd06543 148 VL--PTGLTPDGL--NVLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSDAELWAM 220 (294)
T ss_pred CC--CCCCChhHH--HHHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCHHHHHHH
Confidence 11 223444432 23333444553 4555544322111 1111234555555554442221212 333333332
Q ss_pred HHcCCCeEEEeecCC--ccCCCchHHHHHHHHHcCCeEEEcccCCCCC
Q 023076 242 LENGIPVVSNQVQHS--VVDMRPQQKMAELCQLTGVKLITSLPFLVNN 287 (287)
Q Consensus 242 ~~~~~~~~~~Q~~~n--~~~~~~~~~ll~~~~~~gi~via~spl~~G~ 287 (287)
+ |+.|.+=++... .+....-+.++.+++++||+.+.|..+.|-+
T Consensus 221 i--g~TpMiG~nD~~~e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 221 I--GVTPMIGVNDVGSEVFTLADAQTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred c--cccccccccCCCCceeeHHHHHHHHHHHHhCCCCeEeeeeccCCC
Confidence 2 333433232221 2222234489999999999999999887743
No 45
>PRK07945 hypothetical protein; Provisional
Probab=72.60 E-value=83 Score=29.31 Aligned_cols=153 Identities=12% Similarity=0.066 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCC-------CCcHHHHHHHHhh---hhccCCCceEEEEEeccccCCCCCCCCHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHY-------GPAEDLYGIFINR---VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~Y-------G~sE~~lG~al~~---~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (287)
....+++++|.+.|+..+=.+++. +-...-+-+.++. .++.-. .+ ++...--....+ +...+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~-~I--~Il~GiE~d~~~-~g~~~~~-- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELA-PF--RILTGIEVDILD-DGSLDQE-- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcC-Cc--eEEEEeEecccC-CCCcchh--
Confidence 456789999999999988555542 1111112222222 111111 21 222221111111 1122222
Q ss_pred HHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---------------CCHHH-HHHHHHc
Q 023076 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTER-LRIILEN 244 (287)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn---------------~~~~~-l~~~~~~ 244 (287)
++.|+. .||+ +..+|+.... +.++..+.+.++.+.+.+.-+|=-. +..+. ++.+.++
T Consensus 185 --~~~l~~--~D~v-IgSvH~~~~~--~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~ 257 (335)
T PRK07945 185 --PELLDR--LDVV-VASVHSKLRM--DAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREH 257 (335)
T ss_pred --HHHHHh--CCEE-EEEeecCCCC--CHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHh
Confidence 233333 4665 6678986432 2456677888888889888888321 22223 3444456
Q ss_pred CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 245 GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 245 ~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
+..+.+|--... ..+...+++.|++.|+.++.
T Consensus 258 g~~lEINt~~~r---~~P~~~il~~a~e~G~~vti 289 (335)
T PRK07945 258 GTAVEINSRPER---RDPPTRLLRLALDAGCLFSI 289 (335)
T ss_pred CCEEEEeCCCCC---CCChHHHHHHHHHcCCeEEe
Confidence 766776654332 34666999999999998753
No 46
>PRK13753 dihydropteroate synthase; Provisional
Probab=70.70 E-value=85 Score=28.62 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEE-eecCCCCCCc----HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~----~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
.+++.+.+..++.+ .-|.|.||+=- -.+|+...-. +..+...++.+++.+. -|.|-+|+++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 45666666666543 55888888854 3345543211 2234467778887753 488889999999999998865
Q ss_pred eEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 248 ~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
+. |-+ +-+ ...++.+.+.+.+++++.+-.
T Consensus 99 iI-NDV--sg~---~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 99 YL-NDI--QGF---PDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred EE-EeC--CCC---CchHHHHHHHHcCCCEEEEec
Confidence 42 222 222 244778889999998887654
No 47
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=70.56 E-value=57 Score=31.00 Aligned_cols=88 Identities=16% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEeecCCCC----------CCcHHHHHHHHHHHHHcCCccEEE-----ec--CCCHHHHHHHHH--cCC------CeEEE
Q 023076 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVA-----LT--NFDTERLRIILE--NGI------PVVSN 251 (287)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G~Ir~iG-----vS--n~~~~~l~~~~~--~~~------~~~~~ 251 (287)
+.||.|+.+ ...+++.++++.+..++.. |.|- +. |-+.++.+++.+ .+. +..+|
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 679987642 1137888998888764432 2232 22 567777777665 356 78999
Q ss_pred eecCCccCCC-----ch---HHHHHHHHHcCCeEEEcccCCC
Q 023076 252 QVQHSVVDMR-----PQ---QKMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 252 Q~~~n~~~~~-----~~---~~ll~~~~~~gi~via~spl~~ 285 (287)
-++||+.+.. .+ ....+.++++||.+....+.|.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 9999997421 11 2667788899999988776653
No 48
>PRK07328 histidinol-phosphatase; Provisional
Probab=70.27 E-value=73 Score=28.44 Aligned_cols=100 Identities=13% Similarity=0.235 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCC---C---------CcHHHHHH----HHHHHHHcCCccEEEecCC-------C-
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYS---N---------PGYLDALN----HLTDLKEEGKIKTVALTNF-------D- 234 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~---~---------~~~~e~~~----aL~~l~~~G~Ir~iGvSn~-------~- 234 (287)
...+++.|++...||+ +..+|+.+.. . .+.++.++ .+.++.+.|.+.-+|=-.. .
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 3445556667666776 7778985321 0 11233333 4677888898888874432 1
Q ss_pred -------HHHHHHHHHcCCCeEEEeecC--CccCCCchHHHHHHHHHcCCeEEE
Q 023076 235 -------TERLRIILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 235 -------~~~l~~~~~~~~~~~~~Q~~~--n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+.++.+.++|..+.+|-..+ ..-+..+..++++.|++.|+.++.
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti 226 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL 226 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE
Confidence 112333445676676665322 211234456899999999998653
No 49
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=69.30 E-value=74 Score=28.26 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+-+ +.|.++|+++|++-+ |... +.-++.++++.+.+ .++..+.+..+.+.++.+.+.+++..-
T Consensus 16 ~~~~~~k~~i~-~~L~~~Gv~~iE~g~---p~~~----~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEKLAIA-RALDEAGVDEIEVGI---PAMG----EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEec---CCCC----HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 45555555444 459999999999852 2211 22345566666643 477777877788899998887755433
Q ss_pred EeecCCcc------CCCch------HHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVV------DMRPQ------QKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~------~~~~~------~~ll~~~~~~gi~vi 278 (287)
+-+..|.. +...+ .+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 33333321 11111 267789999998655
No 50
>PRK13796 GTPase YqeH; Provisional
Probab=68.88 E-value=1e+02 Score=28.96 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=83.5
Q ss_pred ceeeccccCCCCCC-----CCCHHHHHHHHHHHHHcC---CCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEecc
Q 023076 93 RVLNGMWQTSGGWG-----RIDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLT 164 (287)
Q Consensus 93 ~lglGt~~~~~~~~-----~~~~~~a~~~l~~A~~~G---in~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~t 164 (287)
.+|-=|.++-. |+ ..+.++..++++..-+.- +-.+|..+.-+.-...+.+... ++. .+.+.+
T Consensus 35 ~~C~RC~~l~h-y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~----~kp-----viLViN 104 (365)
T PRK13796 35 VYCQRCFRLKH-YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG----NNP-----VLLVGN 104 (365)
T ss_pred eEchhhhhhhc-cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC----CCC-----EEEEEE
Confidence 45655665532 22 245667777777666544 4456866654442222333322 222 456788
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 023076 165 KWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (287)
Q Consensus 165 K~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (287)
|..-.+.....+.+.+-++...+.+|....|++.+-.-. ...+++.++.+.+..+.+.+--+|.+|..-..+-..+
T Consensus 105 K~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~--g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 105 KADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK--GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred chhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC--CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHHHH
Confidence 864322234456666666766777787656777765433 2247888888888877788889999999876654443
No 51
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=67.68 E-value=29 Score=33.21 Aligned_cols=81 Identities=7% Similarity=-0.054 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD 190 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg 190 (287)
.....++++|++.|++++||+..+-.- .-+.+..++.+. ...+..-+.| ..+--.+...+++--+ .
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi--------t~v~~~G~dP---Gi~nv~a~~a~~~~~~--~ 144 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI--------TAVLGCGFDP---GITNVLAAYAAKELFD--E 144 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe--------EEEcccCcCc---chHHHHHHHHHHHhhc--c
Confidence 344589999999999999999765431 112222222110 1111221222 2222222333332222 5
Q ss_pred CCccceEEeecCCCC
Q 023076 191 VPCLDMLQFHWWDYS 205 (287)
Q Consensus 191 ~dyiDl~~lH~p~~~ 205 (287)
+++||+|..+-|++.
T Consensus 145 i~si~iy~g~~g~~~ 159 (389)
T COG1748 145 IESIDIYVGGLGEHG 159 (389)
T ss_pred ccEEEEEEecCCCCC
Confidence 899999999988765
No 52
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.63 E-value=22 Score=30.76 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q 252 (287)
+++...+.++ .|-+-|+..+.+=+ - .+ +.++.+++++++.-=-.||..+ .+.++++++++.|..|.
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~---~---tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL---R---TP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFI--- 80 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---C---Cc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEE---
Confidence 4455554444 45556766555542 1 22 2444455565543324588776 48999999999886554
Q ss_pred ecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 253 ~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.|| ....+++++|+++||.++.
T Consensus 81 --vSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 --VSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred --ECC---CCCHHHHHHHHHcCCCEeC
Confidence 343 3456999999999998874
No 53
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=67.08 E-value=1e+02 Score=28.24 Aligned_cols=155 Identities=9% Similarity=0.109 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCC---cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHH
Q 023076 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGP---AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 107 ~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~---sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (287)
..+.++..++++.+.+.|++.+.-.. |. ... +-+.++..... . . ...+.++|... .+.+. -
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~-l~~li~~i~~~-~-~-~~~i~itTNG~---------ll~~~-~ 111 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKD-LEDIIAALAAL-P-G-IRDLALTTNGY---------LLARR-A 111 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccC-HHHHHHHHHhc-C-C-CceEEEEcCch---------hHHHH-H
Confidence 46778999999999999998776432 32 111 23344332211 0 0 11455555421 11122 2
Q ss_pred HHHHHcCCCccceEEeecCCCC-------CCcHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHc--CCCeEE
Q 023076 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVS 250 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~--~~~~~~ 250 (287)
+.|...|++.+- +.+|..+++ ...+++++++++.+++.|. |..+.+-..+.+++.++++. ..++.+
T Consensus 112 ~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v 190 (331)
T PRK00164 112 AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQL 190 (331)
T ss_pred HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeE
Confidence 334455655432 334443321 1237889999999999986 22444445666777666542 233445
Q ss_pred EeecCCccCCC---------chHHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVVDMR---------PQQKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~~~~---------~~~~ll~~~~~~gi~vi 278 (287)
.-++|.++... ...++++..+++|+.+.
T Consensus 191 ~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 227 (331)
T PRK00164 191 RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQ 227 (331)
T ss_pred EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccc
Confidence 55555554321 22368888888765443
No 54
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=67.08 E-value=62 Score=31.99 Aligned_cols=110 Identities=18% Similarity=0.156 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCc---HHHHHHHHHH-H----------HHcCCccEEEecCC------C
Q 023076 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG---YLDALNHLTD-L----------KEEGKIKTVALTNF------D 234 (287)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~---~~e~~~aL~~-l----------~~~G~Ir~iGvSn~------~ 234 (287)
++-+-+.++...++++.+.++++.++.|+..... .+.+++++-+ + .+.+.|--||.++. +
T Consensus 97 selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D 176 (511)
T TIGR01278 97 SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHD 176 (511)
T ss_pred HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHH
Confidence 3444444445555555545778888777654331 2223222221 1 12455777887752 3
Q ss_pred HHHHHHHHHc-CCCeEEEee--------------cCCcc-CCCchHHHHHHH-HHcCCeEEEcccCC
Q 023076 235 TERLRIILEN-GIPVVSNQV--------------QHSVV-DMRPQQKMAELC-QLTGVKLITSLPFL 284 (287)
Q Consensus 235 ~~~l~~~~~~-~~~~~~~Q~--------------~~n~~-~~~~~~~ll~~~-~~~gi~via~spl~ 284 (287)
.+.++++++. |+.+.++-. .+|+. .+.....+-++. ++.|++++...|+|
T Consensus 177 ~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 177 LIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccC
Confidence 3445555543 443332211 11221 111112334444 34599988777876
No 55
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=66.94 E-value=26 Score=30.33 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q 252 (287)
+++...+.+ +.|-+-|++.+.+=+ + .+ +.++.+++++++.-=-.||..+ .+.++++++++.|-.|.
T Consensus 18 ~~e~a~~~~-~al~~~Gi~~iEit~-~-----t~---~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALPLA-KALIEGGLRVLEVTL-R-----TP---VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHHHH-HHHHHcCCCEEEEeC-C-----Cc---cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 445554433 455667776555543 1 22 3444556666554324688876 48999999999886555
Q ss_pred ecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 253 ~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+| ....+++++|+++||.++.
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 343 2355999999999998875
No 56
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=66.02 E-value=53 Score=30.89 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCccceEEeecCC--CCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecC
Q 023076 178 VRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 255 (287)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~lH~p~--~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~ 255 (287)
-+-.+-+.|.++|+++|++-..-.|. |...+.+|.++.+ ++...++..++. .+...++.+++.+.+...+-+.-
T Consensus 69 ~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~~v~i~~s~ 144 (347)
T PLN02746 69 VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAKEVAVFASA 144 (347)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcCEEEEEEec
Confidence 34455666999999999987544442 2222234455444 343335555554 58999999998875543333332
Q ss_pred Ccc------CCCch------HHHHHHHHHcCCeEE
Q 023076 256 SVV------DMRPQ------QKMAELCQLTGVKLI 278 (287)
Q Consensus 256 n~~------~~~~~------~~ll~~~~~~gi~vi 278 (287)
|.. +...+ .+++++++++|+.+.
T Consensus 145 Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 145 SESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 221 11222 168889999999884
No 57
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=65.55 E-value=53 Score=31.66 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeec-CCC----------CCCcHH---HHHHH-HHHHHHcCCccEEEecCCCH
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY----------SNPGYL---DALNH-LTDLKEEGKIKTVALTNFDT 235 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~----------~~~~~~---e~~~a-L~~l~~~G~Ir~iGvSn~~~ 235 (287)
..+.+.+.+.+++.+ .|+.|+|.+|.+-. |.. ..++.+ +.++. .+.|.+.|. +.+|+|||.-
T Consensus 200 ~QT~~~~~~~l~~a~-~l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 200 GQTLESLKEDLEQAL-ELGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 346677777777665 47899999987632 211 122222 33333 345677777 8999999976
No 58
>PRK02399 hypothetical protein; Provisional
Probab=64.41 E-value=26 Score=33.63 Aligned_cols=72 Identities=22% Similarity=0.341 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHHcCC
Q 023076 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 246 (287)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~~~~ 246 (287)
+++...++|.-.+.|.+.+|.-... =++||+|.++|.+..+ |+-+..++++..+.+.|+
T Consensus 200 ~v~~~~~~Le~~GyEvlVFHATG~G-------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gI 272 (406)
T PRK02399 200 CVQAAREELEARGYEVLVFHATGTG-------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGI 272 (406)
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCc-------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCC
Confidence 3444444444444799999976532 2468999999998865 566678889999988887
Q ss_pred CeE-----EEeecCCccC
Q 023076 247 PVV-----SNQVQHSVVD 259 (287)
Q Consensus 247 ~~~-----~~Q~~~n~~~ 259 (287)
|-. +.+++|-+.+
T Consensus 273 P~Vvs~GalDmVnFg~~~ 290 (406)
T PRK02399 273 PQVVSPGALDMVNFGAPD 290 (406)
T ss_pred CEEecCCceeeeecCCcc
Confidence 633 3455555543
No 59
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=64.17 E-value=1e+02 Score=27.23 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEeec---CCccCC
Q 023076 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQ---HSVVDM 260 (287)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q~~---~n~~~~ 260 (287)
-|+.+|. |.+.+|..+.......--|+.+.++++.-.+.-|.... .+++.++++++.+ .++.+.+- |+- .
T Consensus 163 ~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g-~~dgv~~g~a~~~~--~ 236 (254)
T TIGR00735 163 EVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKG-KADAALAASVFHYR--E 236 (254)
T ss_pred HHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CcceeeEhHHHhCC--C
Confidence 3456665 55666764432110001244455666655566665553 4788999988764 23333221 221 2
Q ss_pred CchHHHHHHHHHcCCeE
Q 023076 261 RPQQKMAELCQLTGVKL 277 (287)
Q Consensus 261 ~~~~~ll~~~~~~gi~v 277 (287)
-...++.++|+++||.+
T Consensus 237 ~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 237 ITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCHHHHHHHHHHCCCcc
Confidence 23448899999999864
No 60
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=64.02 E-value=1.3e+02 Score=29.82 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=47.4
Q ss_pred cceEEeecCCCCCCcH---HHHHHHHHHH---------------HHcCCccEEEecC------CCHHHHHHHHHc-CCCe
Q 023076 194 LDMLQFHWWDYSNPGY---LDALNHLTDL---------------KEEGKIKTVALTN------FDTERLRIILEN-GIPV 248 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~---~e~~~aL~~l---------------~~~G~Ir~iGvSn------~~~~~l~~~~~~-~~~~ 248 (287)
++++.+|.|....... +.+++++-+. +.+++|--||.++ .+.+.++++++. |+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 6889999886653322 2233322221 1235688888774 244556666653 5444
Q ss_pred EEEee--------------cCCccC-CCchHHHHHHHH-HcCCeEEEcccCC
Q 023076 249 VSNQV--------------QHSVVD-MRPQQKMAELCQ-LTGVKLITSLPFL 284 (287)
Q Consensus 249 ~~~Q~--------------~~n~~~-~~~~~~ll~~~~-~~gi~via~spl~ 284 (287)
.++-. .+|+.- +.....+-++.+ +.|++++...|+|
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 32211 122221 122234555554 5699888777876
No 61
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=63.08 E-value=1.3e+02 Score=27.81 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHH----HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHH
Q 023076 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDL----YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (287)
Q Consensus 107 ~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~----lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (287)
..+.++..++++.+.+.|+..|.-. |. |.+ +-+.++..... . . ...+.++|.. ..+.+ .
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~t---GG-EPllr~dl~~li~~i~~~-~-~-l~~i~itTNG---------~ll~~-~ 106 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLT---GG-EPLVRRGCDQLVARLGKL-P-G-LEELSLTTNG---------SRLAR-F 106 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---Cc-CCCccccHHHHHHHHHhC-C-C-CceEEEEeCh---------hHHHH-H
Confidence 4677899999999999999877543 31 222 22333322111 1 1 1134455531 11222 3
Q ss_pred HHHHHHcCCCccceEEeecCCCC-------CCcHHHHHHHHHHHHHcCC--c--cEEEecCCCHHHHHHHHHc--CCCeE
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK--I--KTVALTNFDTERLRIILEN--GIPVV 249 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~G~--I--r~iGvSn~~~~~l~~~~~~--~~~~~ 249 (287)
-+.|...|++++- +.++..+++ ...++.+++.++.+++.|. | ..+.+...+.+++.++++. ..+++
T Consensus 107 ~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 107 AAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred HHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 3456667777665 345554332 1237889999999999986 2 2344455677777776552 22334
Q ss_pred EEeecCCcc
Q 023076 250 SNQVQHSVV 258 (287)
Q Consensus 250 ~~Q~~~n~~ 258 (287)
+.-++|-|+
T Consensus 186 ~~~ie~mP~ 194 (329)
T PRK13361 186 IAFIEEMPL 194 (329)
T ss_pred EEEEecccC
Confidence 444445443
No 62
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=63.07 E-value=64 Score=30.79 Aligned_cols=83 Identities=7% Similarity=-0.003 Sum_probs=60.0
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc-hHHHHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQ 271 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~-~~~ll~~~~ 271 (287)
.++.++..|-+.. -++.+.+|++.-.+. +.|=|-++...++++++.+ -++++|+...-.-.-. -.++.+.|+
T Consensus 232 ~~l~~iEeP~~~~-----d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~ 305 (404)
T PRK15072 232 YRLFWLEDPTPAE-----NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAA 305 (404)
T ss_pred cCCcEEECCCCcc-----CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHH
Confidence 5788888775432 356677888876665 6777788999999999876 4788888776532222 238889999
Q ss_pred HcCCeEEEccc
Q 023076 272 LTGVKLITSLP 282 (287)
Q Consensus 272 ~~gi~via~sp 282 (287)
.+|+.++..+.
T Consensus 306 ~~gi~~~~h~~ 316 (404)
T PRK15072 306 LYQVRTGSHGP 316 (404)
T ss_pred HcCCceeeccC
Confidence 99999887543
No 63
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=62.86 E-value=1.1e+02 Score=27.24 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceE-EeecCCCCCCcHH-H---HHHHHHHHHHc-CCccEEEecCCCHHHHHHHHHcCC
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDML-QFHWWDYSNPGYL-D---ALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGI 246 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~-~lH~p~~~~~~~~-e---~~~aL~~l~~~-G~Ir~iGvSn~~~~~l~~~~~~~~ 246 (287)
.+++.+.+..++.+ .-|.++||+= .--+|+...-..+ | ....++.+++. +. -+.+=+++++.++++++.|.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677666666554 5689999993 2223433211122 2 55555666665 43 37788899999999999874
Q ss_pred CeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 247 ~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
+ .+|-+..- . .+++++.++++|..++.+.
T Consensus 97 ~-iINsis~~--~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 D-IINDVSGG--Q---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred C-EEEECCCC--C---CchhHHHHHHcCCcEEEEe
Confidence 4 33444332 1 3478899999999998864
No 64
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=62.81 E-value=1.2e+02 Score=28.19 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDML 197 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~ 197 (287)
.++.+.+.+-++ .|.+.|+++|++-
T Consensus 20 ~f~~~~~~~ia~-~Ld~aGV~~IEvg 44 (333)
T TIGR03217 20 QFTIEQVRAIAA-ALDEAGVDAIEVT 44 (333)
T ss_pred cCCHHHHHHHHH-HHHHcCCCEEEEe
Confidence 455555544433 4677777777775
No 65
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=62.75 E-value=77 Score=29.49 Aligned_cols=93 Identities=12% Similarity=0.104 Sum_probs=53.9
Q ss_pred HHHcCCCccceEEee-cCCCCCCcHHHHHHHHHHHHHcCCccE-EEecCC---CHHHHHHHHHc--CCCeEEEeecCCcc
Q 023076 186 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHSVV 258 (287)
Q Consensus 186 L~rLg~dyiDl~~lH-~p~~~~~~~~e~~~aL~~l~~~G~Ir~-iGvSn~---~~~~l~~~~~~--~~~~~~~Q~~~n~~ 258 (287)
-+.+|.|+|||-+.- .|+..+...++....++...+.=.+=- |..|.. +++.++++++. +-++-++.....
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e-- 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED-- 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH--
Confidence 347888888887432 233222223444444444433322222 665533 78888888873 334544444422
Q ss_pred CCCchHHHHHHHHHcCCeEEEcccC
Q 023076 259 DMRPQQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 259 ~~~~~~~ll~~~~~~gi~via~spl 283 (287)
.-+.+.+.|+++|..+++.+|.
T Consensus 163 ---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 ---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred ---HHHHHHHHHHHhCCeEEEEcHH
Confidence 2337899999999999998863
No 66
>PRK05588 histidinol-phosphatase; Provisional
Probab=62.49 E-value=1.1e+02 Score=26.96 Aligned_cols=154 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCC--C---------CcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHY--G---------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~Y--G---------~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~ 179 (287)
....+.+++|.+.|+..+ .+++. . +-+..+ +.+++.+. .++.+.--. ++.++ -.
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~-------~~I~~GiE~-----~~~~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRN-------NKLLLGIEL-----GMEKD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhc-------CCcceEEEe-----cccCC-CH
Confidence 456789999999999988 66552 1 011111 11222111 122222111 11222 24
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCC---------CcHHHHH----HHHHHHHH-cCCccEEEecC-------C-----
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDYSN---------PGYLDAL----NHLTDLKE-EGKIKTVALTN-------F----- 233 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~---------~~~~e~~----~aL~~l~~-~G~Ir~iGvSn-------~----- 233 (287)
..+++.|++...||+ +..+|+.+... .+.++.+ +.+.++.+ .|++.-+|=-. +
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~ 159 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEI 159 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccc
Confidence 555677777777776 68889853211 1133333 56666666 46565555111 0
Q ss_pred ----CHHHH----HHHHHcCCCeEEEeecCCc-cCCCchHHHHHHHHHcCCeEEEc
Q 023076 234 ----DTERL----RIILENGIPVVSNQVQHSV-VDMRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 234 ----~~~~l----~~~~~~~~~~~~~Q~~~n~-~~~~~~~~ll~~~~~~gi~via~ 280 (287)
-...+ +.+.+.+..+.+|--.+.. ....+...+++.|++.|+.++..
T Consensus 160 ~~~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~l 215 (255)
T PRK05588 160 YYDEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITL 215 (255)
T ss_pred cHHHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEE
Confidence 01222 3333457667776533211 11223347889999999875443
No 67
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=62.31 E-value=1.5e+02 Score=28.49 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-ecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEec---cccCCCCCCCCHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL---TKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~---tK~~~~~~~~~~~~i~~~le 183 (287)
.+.+.-.+-++.|++.|-..+ |-+ ..|+-.++=.+.|+..+.+ +-.|-|. .+......+.+++.+.+.++
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tGgdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 74 SDIEEEVEKALIAIKYGADTVMDLS-TGGDLDEIRKAILDAVPVP-----VGTVPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHcCCCC-----ccCccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 455666677899999997654 554 3465444323333322211 1111111 01111223678888888888
Q ss_pred HHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC
Q 023076 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~ 234 (287)
+..+ |-+|.+-+|.- -..+.++.+++.|++ .|+-+-.
T Consensus 148 ~qa~----dGVDfmTiH~G--------i~~~~~~~~~~~~R~--~giVSRG 184 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAG--------VLLEYVERLKRSGRI--TGIVSRG 184 (423)
T ss_pred HHHH----hCCCEEEEccc--------hhHHHHHHHHhCCCc--cCeecCc
Confidence 7665 45788999963 155667889998854 5555433
No 68
>PRK09248 putative hydrolase; Validated
Probab=62.17 E-value=1.1e+02 Score=26.82 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=44.2
Q ss_pred CCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-----CCHHH-HHHHHHcCCCeEEEeecCCcc------
Q 023076 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-----FDTER-LRIILENGIPVVSNQVQHSVV------ 258 (287)
Q Consensus 191 ~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-----~~~~~-l~~~~~~~~~~~~~Q~~~n~~------ 258 (287)
.||+ ++.+|+.........+-.+.+.++.+.|.+--+|=-. ...+. ++.+.+.|. .+|++.+.+
T Consensus 94 ~D~v-i~svH~~~~~~~~~~~~~~~~i~~l~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~---~lEvN~~~l~~~~~g 169 (246)
T PRK09248 94 LDIV-IAGFHEPVFAPGDKETNTQALINAIKNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV---ALEINNSSFGHSRKG 169 (246)
T ss_pred CCEE-EEecccCccCCcCHHHHHHHHHHHHhcCCCCEEECcCCCCCcccHHHHHHHHHHhCC---EEEEECCCCccCCCC
Confidence 3554 5567865322112333344444445788876665322 12233 344555564 344443322
Q ss_pred CCCchHHHHHHHHHcCCeEEE
Q 023076 259 DMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 259 ~~~~~~~ll~~~~~~gi~via 279 (287)
...+...++..+.++|+.++.
T Consensus 170 ~~~~~~~~~~~~~~~g~~~~~ 190 (246)
T PRK09248 170 SEDNCRAIAALCKKAGVWVAL 190 (246)
T ss_pred CcChHHHHHHHHHHcCCeEEE
Confidence 112455888999999987664
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=62.05 E-value=1.2e+02 Score=27.30 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC----------CCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA----------~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i 178 (287)
+.++..+..+.+.+.|+..||.- ..|+...+.+-+.++..... + ++.+.-|..+. . +.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~----~--~~Pv~vKl~~~---~--~~~ 168 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA----T--DVPVIVKLTPN---V--TDI 168 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc----c--CCCEEEEeCCC---c--hhH
Confidence 45777888888888999998872 23555556666666654322 1 23344454332 1 122
Q ss_pred HHHHHHHHHHcCCCccceEE------eecC--CC---------CCC-cHHHHHHHHHHHHHcCCccEEEecCC-CHHHHH
Q 023076 179 RESIDVSRRRMDVPCLDMLQ------FHWW--DY---------SNP-GYLDALNHLTDLKEEGKIKTVALTNF-DTERLR 239 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~------lH~p--~~---------~~~-~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~ 239 (287)
. .+-+.++..|.|.|++.- +|.. .+ ..+ ...-.++.+.++++.=.+.-||.... +++.+.
T Consensus 169 ~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~ 247 (296)
T cd04740 169 V-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDAL 247 (296)
T ss_pred H-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 2 333456778888776631 1110 00 000 01225677778877666888998875 789999
Q ss_pred HHHHcCCCeEEEeecCCccC-C----CchHHHHHHHHHcCC
Q 023076 240 IILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (287)
Q Consensus 240 ~~~~~~~~~~~~Q~~~n~~~-~----~~~~~ll~~~~~~gi 275 (287)
++++.| .+.+|+-=.++. + ...+++-++.+++|.
T Consensus 248 ~~l~~G--Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 248 EFLMAG--ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHcC--CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 999877 466665533221 1 123367777888875
No 70
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=61.94 E-value=18 Score=31.22 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=58.3
Q ss_pred HHcCCCccceEEe-ecCCCCCCc----HHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 023076 187 RRMDVPCLDMLQF-HWWDYSNPG----YLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (287)
Q Consensus 187 ~rLg~dyiDl~~l-H~p~~~~~~----~~e~~~aL~~l~~--~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~ 259 (287)
..-|.|+||+=-- -+|.....+ .+.....++.+++ .+. -+-+=+++++.++++++.|.++..+...+..
T Consensus 29 ~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~-- 104 (210)
T PF00809_consen 29 VEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED-- 104 (210)
T ss_dssp HHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS--
T ss_pred HHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc--
Confidence 4469999998532 123322211 2334455566664 343 4667789999999999988776655555443
Q ss_pred CCchHHHHHHHHHcCCeEEEcccC
Q 023076 260 MRPQQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~spl 283 (287)
..++++.++++|..++++-.-
T Consensus 105 ---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ---STTHHHHHHHHTSEEEEESES
T ss_pred ---cchhhhhhhcCCCEEEEEecc
Confidence 448999999999999987543
No 71
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=61.91 E-value=53 Score=30.65 Aligned_cols=151 Identities=14% Similarity=0.113 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCC--------C--cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYG--------P--AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIV 178 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG--------~--sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i 178 (287)
+.++..+.+..+.+.|++.|=.--..+ . .+.-.=+++++.-.+ ++ ++.+-. + ..++.+..
T Consensus 123 ~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~---~~--~l~vDa----N-~~~~~~~A 192 (352)
T cd03325 123 RPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGP---DI--DIGVDF----H-GRVSKPMA 192 (352)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCC---CC--EEEEEC----C-CCCCHHHH
Confidence 345566777778899999886532110 0 111111233332112 11 122211 1 23455543
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~ 257 (287)
.+ -++.|. ..++.++..|-+.. -++.+.+|+++.-+. +.|=|.++.+++..+++.+ -++++|.....
T Consensus 193 ~~----~~~~l~--~~~i~~iEeP~~~~-----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~v~~d~~~ 260 (352)
T cd03325 193 KD----LAKELE--PYRLLFIEEPVLPE-----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDG-AVDIIQPDISH 260 (352)
T ss_pred HH----HHHhcc--ccCCcEEECCCCcc-----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhC-CCCEEecCccc
Confidence 33 333442 34667777765322 366678888776555 5667778999999998765 37788888665
Q ss_pred cCCC-chHHHHHHHHHcCCeEEEcc
Q 023076 258 VDMR-PQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 258 ~~~~-~~~~ll~~~~~~gi~via~s 281 (287)
+=.- .-.++.+.|+++|+.++..+
T Consensus 261 ~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 261 AGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred cCCHHHHHHHHHHHHHcCCcEeccC
Confidence 3211 22389999999999988654
No 72
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=61.75 E-value=58 Score=30.46 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=54.9
Q ss_pred ceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-chHHHHHHHHH
Q 023076 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQL 272 (287)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~~~~ll~~~~~ 272 (287)
++.++..|-+. +-++.+.+|+++..+. +.|=|-++.+++.++++.+ .++++|+.....-.- .-.++..+|++
T Consensus 215 ~~~~iEeP~~~-----~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~ 288 (365)
T cd03318 215 GVELIEQPVPR-----ENLDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEA 288 (365)
T ss_pred CcceeeCCCCc-----ccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHH
Confidence 45666766432 2356677788776665 6667778899999998875 377778876543211 22388899999
Q ss_pred cCCeEEEc
Q 023076 273 TGVKLITS 280 (287)
Q Consensus 273 ~gi~via~ 280 (287)
+|+.++..
T Consensus 289 ~gi~~~~~ 296 (365)
T cd03318 289 AGIALYGG 296 (365)
T ss_pred cCCceeec
Confidence 99998854
No 73
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=61.40 E-value=30 Score=32.48 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=57.0
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc-hHHHHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQ 271 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~-~~~ll~~~~ 271 (287)
.++.++..|-+. +-++.+.++++...+. +.|=|-++..++.++++.+ .++++|+.....-.-. -..+...|+
T Consensus 213 ~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~-~~d~~~~d~~~~GGi~~~~~i~~lA~ 286 (368)
T TIGR02534 213 AGVELIEQPTPA-----ENREALARLTRRFNVPIMADESVTGPADALAIAKAS-AADVFALKTTKSGGLLESKKIAAIAE 286 (368)
T ss_pred cChhheECCCCc-----ccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhC-CCCEEEEcccccCCHHHHHHHHHHHH
Confidence 456667766533 2355667787776665 6777888999999998765 4777888766532211 227889999
Q ss_pred HcCCeEEEcc
Q 023076 272 LTGVKLITSL 281 (287)
Q Consensus 272 ~~gi~via~s 281 (287)
.+|+.+...+
T Consensus 287 ~~gi~~~~~~ 296 (368)
T TIGR02534 287 AAGIALYGGT 296 (368)
T ss_pred HcCCceeeec
Confidence 9999988653
No 74
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=60.77 E-value=1.5e+02 Score=28.04 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc------CCccEEEecCCCHHHHHHHHHcCCC
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~------G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
+++...+.++ .|+...-++ ++++..|-+..+ .++-++.+.++.+. +.=-..|=|.++.+.++++++.+ -
T Consensus 210 ~~~~A~~~~~-~Le~~~~~~--~~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~-a 284 (369)
T cd03314 210 DPDRAADYLA-TLEEAAAPF--PLRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAG-A 284 (369)
T ss_pred CHHHHHHHHH-HHHHhcCCC--cEEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhC-C
Confidence 6665444433 333331123 457777754322 22456667777766 44446677788999999999876 4
Q ss_pred eEEEeecCCccCCCc-hHHHHHHHHHcCCeEEEcc
Q 023076 248 VVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 248 ~~~~Q~~~n~~~~~~-~~~ll~~~~~~gi~via~s 281 (287)
.+++|+..+-.-.-. -.++.++|+.+||.++..+
T Consensus 285 ~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~ 319 (369)
T cd03314 285 AHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGG 319 (369)
T ss_pred CCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeC
Confidence 788888887542222 2388999999999998753
No 75
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=60.34 E-value=1.4e+02 Score=27.35 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CcHHHHHHHHHHHHHc--CCccEEE-------ecCCCHHHHHHH
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEE--GKIKTVA-------LTNFDTERLRII 241 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~--G~Ir~iG-------vSn~~~~~l~~~ 241 (287)
..+++.+.+++.+-+++.+.|.||+=.=+ +.... ...+...++|.+|+++ ++.-.+- +.....+.++.+
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~-~~~~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a 164 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEG-GALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAA 164 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccC-CccccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHH
Confidence 35788999999999999999999995444 22221 1245667778888876 3332222 222333456666
Q ss_pred HHcCCCeEEEeec-CCc
Q 023076 242 LENGIPVVSNQVQ-HSV 257 (287)
Q Consensus 242 ~~~~~~~~~~Q~~-~n~ 257 (287)
.+.|+.++.+.+. |.+
T Consensus 165 ~~~Gv~~d~VNiMtmDy 181 (294)
T cd06543 165 AANGVDLDTVNIMTMDY 181 (294)
T ss_pred HHcCCCcceeeeeeecC
Confidence 6677666655444 443
No 76
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=60.33 E-value=87 Score=27.12 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH----cCCCe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 248 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~----~~~~~ 248 (287)
++.+...+ +-+.|.++|+++|++- .|..... ..+.++.+.+.... .+-.+++-...+.++.+.+ .+.+.
T Consensus 11 ~~~~~k~~-i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEEKLE-IAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHHHHH-HHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHHHHH-HHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 44454444 4446999999998888 3322111 33455555555555 4455666667777777554 56555
Q ss_pred EEEeecCCccC------CC------chHHHHHHHHHcCCeE
Q 023076 249 VSNQVQHSVVD------MR------PQQKMAELCQLTGVKL 277 (287)
Q Consensus 249 ~~~Q~~~n~~~------~~------~~~~ll~~~~~~gi~v 277 (287)
.-+-...|... .. .-.+.+.+++++|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44444455411 11 1126788888888877
No 77
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=60.32 E-value=1.3e+02 Score=26.96 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEE-eecCCCCCCcHHH----HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLD----ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~e----~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
.+.+.+.+..++.+ +-|-|+||+=. --+|+....+.++ ....++.+++.-.+- +-+=+++++.++++++.|.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45566655555443 56899999953 3345433212222 333456666653332 77779999999999998743
Q ss_pred eEEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 248 ~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
.+|-+. ..... .++++.++++|..++.+-
T Consensus 99 -iINdis--g~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 -IINDVS--GGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred -EEEeCC--CCCCC--hHHHHHHHHcCCCEEEEC
Confidence 334333 22111 588999999999999864
No 78
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=59.30 E-value=56 Score=29.06 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCC-----------------CC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP-----------------PP 170 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~-----------------~~ 170 (287)
.+.++..++.+++-+.||.||=|...- +- -++|.+...+ -++|.+--.. ..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~----~s-~d~l~~~~~~-------~~KIaS~dl~n~~lL~~~A~tgkPvIlST 120 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDE----ES-VDFLEELGVP-------AYKIASGDLTNLPLLEYIAKTGKPVILST 120 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SH----HH-HHHHHHHT-S-------EEEE-GGGTT-HHHHHHHHTT-S-EEEE-
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCH----HH-HHHHHHcCCC-------EEEeccccccCHHHHHHHHHhCCcEEEEC
Confidence 567899999999999999999876532 21 1233332222 2233221000 00
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 023076 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (287)
Q Consensus 171 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l 238 (287)
...+-+.|.++++...++- .-|+.++|+.... .+.-+--+..+..|++.=- --||.|.|+....
T Consensus 121 G~stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~ 185 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIE 185 (241)
T ss_dssp TT--HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSH
T ss_pred CCCCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcH
Confidence 1335677777777654444 3589999986432 1212224555566654333 4789999986543
No 79
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=58.75 E-value=35 Score=29.39 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q 252 (287)
+++...+.+ +.|-.-|+..+.+= +- .+...+.++.+.+-.. + -.||..+ .+.++++++++.|..|.
T Consensus 18 ~~~~a~~~~-~al~~gGi~~iEiT---~~---t~~a~~~I~~l~~~~p-~--~~vGAGTV~~~e~a~~a~~aGA~Fi--- 84 (196)
T PF01081_consen 18 DPEDAVPIA-EALIEGGIRAIEIT---LR---TPNALEAIEALRKEFP-D--LLVGAGTVLTAEQAEAAIAAGAQFI--- 84 (196)
T ss_dssp SGGGHHHHH-HHHHHTT--EEEEE---TT---STTHHHHHHHHHHHHT-T--SEEEEES--SHHHHHHHHHHT-SEE---
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEe---cC---CccHHHHHHHHHHHCC-C--CeeEEEeccCHHHHHHHHHcCCCEE---
Confidence 345554433 34555666554443 22 2224455554444332 2 3588876 48999999999886554
Q ss_pred ecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 253 VQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 253 ~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+| ....+++++|+++|+.++.
T Consensus 85 --vSP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 85 --VSP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp --EES---S--HHHHHHHHHHTSEEEE
T ss_pred --ECC---CCCHHHHHHHHHcCCcccC
Confidence 233 3455999999999999885
No 80
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=58.48 E-value=95 Score=28.99 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccceEEeecC-------CCCCCcHHHHHHHHHHHHH-cCCccEEEec---CCCHHHHH
Q 023076 171 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKE-EGKIKTVALT---NFDTERLR 239 (287)
Q Consensus 171 ~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p-------~~~~~~~~e~~~aL~~l~~-~G~Ir~iGvS---n~~~~~l~ 239 (287)
+.++.+.+.+-++ .|.+.|+++|.+-..-.. .+.... -++.++.+.+ ....+...+. ..+.+.++
T Consensus 20 ~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~---~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~ 95 (337)
T PRK08195 20 HQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSFNYGFGAHT---DEEYIEAAAEVVKQAKIAALLLPGIGTVDDLK 95 (337)
T ss_pred CccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccccCCCCCCC---HHHHHHHHHHhCCCCEEEEEeccCcccHHHHH
Confidence 3566666655554 488888888888521100 111111 2333344422 2234444433 22567777
Q ss_pred HHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 240 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 240 ~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+.+.|+...-+-...+-. ..-.+.+++++++|..+..
T Consensus 96 ~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 96 MAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTVG 133 (337)
T ss_pred HHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEEE
Confidence 7777664432222222221 1233677888888876654
No 81
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=58.35 E-value=1.2e+02 Score=29.74 Aligned_cols=65 Identities=6% Similarity=-0.066 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHc--CCCeEEEeecCCccCCCchHHHHHHHHHcCC
Q 023076 209 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 275 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~--~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi 275 (287)
.++..++++.+++.|.... +|+-+-+.+.+++-++. ..+++..+ ++++.+.+..++.+.+++.+.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~--~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQAN--WLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceE--EEEecCCCCcHHHHHHHhhcc
Confidence 6778889999999996433 45556677776665542 23344333 345555566678887777653
No 82
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=58.25 E-value=1.4e+02 Score=26.68 Aligned_cols=103 Identities=16% Similarity=0.040 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeEE
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 250 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--~~~~~~ 250 (287)
.+++.+.+..++.++ -|-|+||+=. .|. ..+..++.-+.+..+.+.-. .-|-|=+++++.++++++. |. ..+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 466777777777665 5999999864 233 22223333333333332212 2367778999999999986 63 444
Q ss_pred EeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 251 NQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 251 ~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
|-+...-.+ ....++++.++++|..++.+..
T Consensus 97 NsIs~~~~~-e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 97 NSINLEDGE-ERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred EeCCCCCCc-cccHHHHHHHHHhCCCEEEecc
Confidence 554432111 1234788999999999888754
No 83
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.14 E-value=40 Score=29.32 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC---ccEEEecC-CCHHHHHHHHHcCCCeE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTN-FDTERLRIILENGIPVV 249 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~---Ir~iGvSn-~~~~~l~~~~~~~~~~~ 249 (287)
+.+...+.+ +.|-.-|+.-+.+=+ - .+ +.++.+++++++-. =-.||..+ .+.++++++++.|..|.
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit~---~---~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVTY---T---NP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEC---C---Cc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 445554444 355566766655543 1 22 24445555554321 12578766 48999999999886555
Q ss_pred EEeecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 250 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 250 ~~Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
+ +| ....+++++|+++||.++.
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 3 44 3455999999999998874
No 84
>PLN02428 lipoic acid synthase
Probab=58.12 E-value=1.7e+02 Score=27.63 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCC----CC--CCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMAD----HY--GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~----~Y--G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (287)
.+.++..++.+.+.+.|++++=-.. .| +..+. +.+.++....... .+.+.+.+. . ...+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~-~~elir~Ir~~~P-~i~Ie~L~p-----d-f~~d------- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGH-FAETVRRLKQLKP-EILVEALVP-----D-FRGD------- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHH-HHHHHHHHHHhCC-CcEEEEeCc-----c-ccCC-------
Confidence 4566777788888888988662221 12 22332 4555655433211 232222111 0 0112
Q ss_pred HHHHHHHcCCCccceEEeecCCC----------CCCcHHHHHHHHHHHHHc--CCcc-E---EEecCCCHHHHHHHHHc-
Q 023076 182 IDVSRRRMDVPCLDMLQFHWWDY----------SNPGYLDALNHLTDLKEE--GKIK-T---VALTNFDTERLRIILEN- 244 (287)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~----------~~~~~~e~~~aL~~l~~~--G~Ir-~---iGvSn~~~~~l~~~~~~- 244 (287)
++.|++|.-.-+|.| -|+++. ....+++.++.|+.+++. |..- . +|+ .-+.+++.+.++.
T Consensus 195 -~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~L 271 (349)
T PLN02428 195 -LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDL 271 (349)
T ss_pred -HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHH
Confidence 223333322235553 366553 112378899999999998 7653 2 566 4466666665542
Q ss_pred -CCCeEEEee-cC-Cc------cCC--CchH--HHHHHHHHcCCeEEEcccCCCC
Q 023076 245 -GIPVVSNQV-QH-SV------VDM--RPQQ--KMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 245 -~~~~~~~Q~-~~-n~------~~~--~~~~--~ll~~~~~~gi~via~spl~~G 286 (287)
...++++.+ +| .| +.+ .+++ .+-+++.+.|...++-+||-+-
T Consensus 272 relgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vrs 326 (349)
T PLN02428 272 RAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVRS 326 (349)
T ss_pred HHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCcccc
Confidence 123333332 22 11 111 2232 6778889999999999999763
No 85
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=57.91 E-value=67 Score=26.06 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=45.4
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.|+-|++. ...+..+++.+.++.+.+. ....|++++...... .++.+..+.|.++.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 456666777543 5678899999988888763 457899999988776 5577777777766654
No 86
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=57.90 E-value=47 Score=30.62 Aligned_cols=150 Identities=11% Similarity=0.031 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (287)
+.++..+.+..+.+.|++.|=.-- -...+.-+=+++++.. +.. ++.+-- + ..++++..+ . +++
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv-~~~~d~~~v~~vr~~~-~~~-----~l~vDa----N-~~~~~~~a~-~----~~~ 194 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI-TPQIMHQLVKLRRLRF-PQI-----PLVIDA----N-ESYDLQDFP-R----LKE 194 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe-CCchhHHHHHHHHHhC-CCC-----cEEEEC----C-CCCCHHHHH-H----HHH
Confidence 446667778888899999873311 0111211123343322 111 122211 1 234555532 1 233
Q ss_pred cCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc-hHHH
Q 023076 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKM 266 (287)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~-~~~l 266 (287)
|. ..++.++..|-+ .+-++.+.++++.-.+. +.|=|.++...+..+++.+ .++++|+..+-+-.-. -.++
T Consensus 195 l~--~~~~~~iEeP~~-----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 195 LD--RYQLLYIEEPFK-----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELG-NVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred Hh--hCCCcEEECCCC-----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEeCcchhcCHHHHHHH
Confidence 32 246677776642 23456678888776555 6777889999999998866 4788888876532211 2388
Q ss_pred HHHHHHcCCeEEEcccC
Q 023076 267 AELCQLTGVKLITSLPF 283 (287)
Q Consensus 267 l~~~~~~gi~via~spl 283 (287)
...|+++|+.++..+.+
T Consensus 267 ~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 267 IETCREHGAKVWIGGML 283 (324)
T ss_pred HHHHHHcCCeEEEcceE
Confidence 99999999999875433
No 87
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=57.45 E-value=1.7e+02 Score=27.38 Aligned_cols=111 Identities=10% Similarity=0.033 Sum_probs=74.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 023076 169 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (287)
Q Consensus 169 ~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~ 248 (287)
+...++.+...+..+-..+-+++++|-|=.+.......++..+++++.++|.++|..- +=+++-++...+++.+.| +
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v-~~yc~~d~~~a~~l~~~g--~ 219 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQV-MVYCSDDPIAAKRLEDAG--A 219 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHhcC--C
Confidence 3456788888888888889899999888877766666677999999999999999854 256667888888887765 3
Q ss_pred EEEeecCCccCC----CchHHHHHHHHHcCCeEEEccc
Q 023076 249 VSNQVQHSVVDM----RPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 249 ~~~Q~~~n~~~~----~~~~~ll~~~~~~gi~via~sp 282 (287)
.+++.-=+|+=. .....+-..++..++.++.-.-
T Consensus 220 ~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAG 257 (326)
T PRK11840 220 VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAG 257 (326)
T ss_pred EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCC
Confidence 444442222210 0111333444445677765443
No 88
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=57.39 E-value=1.3e+02 Score=28.33 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+ +-+.|.++|+++|++- +|... +.-++.+.++.+.+ ..+..+++..+.+.++.+.+.+.+...
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 345555544 4445899999998885 33221 22355666776664 377777787788999998887755433
Q ss_pred EeecCCcc------CCCchH------HHHHHHHHcCCeEE
Q 023076 251 NQVQHSVV------DMRPQQ------KMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~------~~~~~~------~ll~~~~~~gi~vi 278 (287)
+-+..|.. ....++ +.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 33333321 111121 67889999998654
No 89
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=57.30 E-value=74 Score=27.51 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=40.7
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCC
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~Q~~~n 256 (287)
..+|.||+=+.+... .+..-.. +..+.+.... .+.++.+||. |-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~Gad~iGfI~~~~-S~R~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHg~ 86 (210)
T PRK01222 20 AELGADAIGFVFYPK-SPRYVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVET-VPLDLLQLHGD 86 (210)
T ss_pred HHcCCCEEEEccCCC-CCCcCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 358999998874322 1111112 3333333222 3568899987 6688888888764 36899999754
No 90
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=57.08 E-value=76 Score=26.92 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC--HHHHHHHHHcCCCeEEEee
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 253 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~--~~~l~~~~~~~~~~~~~Q~ 253 (287)
+.....+...++..+.+.-.+++--.............+.+..+++.|- .+++.++. ...++.+.. ++|+.+=+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~--~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR--LPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh--CCCCEEEE
Confidence 4456777788888887653333322211112224557888999999997 57777764 333444433 35666665
Q ss_pred cCCccCC--------CchHHHHHHHHHcCCeEEEc
Q 023076 254 QHSVVDM--------RPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 254 ~~n~~~~--------~~~~~ll~~~~~~gi~via~ 280 (287)
..+.+.. ..-+.++..|+..|+.+++-
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 5444322 11236788999999998874
No 91
>PRK00077 eno enolase; Provisional
Probab=55.82 E-value=1.6e+02 Score=28.32 Aligned_cols=96 Identities=17% Similarity=0.124 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC--CccEEEec--CCCHHHHHHHHHcCCCe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALT--NFDTERLRIILENGIPV 248 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGvS--n~~~~~l~~~~~~~~~~ 248 (287)
++++...+.+.+.++. .+++++..|-+.. -|+.+.+|.++- +|.-.|== ..+++.++++++.+ -.
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~-----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~-a~ 329 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN-----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKG-AA 329 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc-----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhC-CC
Confidence 4666666666655555 4578888875433 344556666653 45544422 23699999998865 47
Q ss_pred EEEeecCCccCCCch-HHHHHHHHHcCCeEEE
Q 023076 249 VSNQVQHSVVDMRPQ-QKMAELCQLTGVKLIT 279 (287)
Q Consensus 249 ~~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via 279 (287)
+++|+..+-+-.-.+ .++...|+++|+.++.
T Consensus 330 d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 330 NSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 778887775422222 2889999999997654
No 92
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=55.69 E-value=89 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=44.1
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.|+-|.... ...+..+++.+.+..+... .+..|++++..+.....++.+..+.|..|.+.
T Consensus 45 R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4456666664432 4578888888888886554 23579999998876665577777777776554
No 93
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=55.38 E-value=72 Score=28.10 Aligned_cols=43 Identities=12% Similarity=0.068 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCEEecCCCC-----CCcHHHHHHHHhh
Q 023076 105 WGRIDRDDAVDAMLRYADAGLTTFDMADHY-----GPAEDLYGIFINR 147 (287)
Q Consensus 105 ~~~~~~~~a~~~l~~A~~~Gin~fDTA~~Y-----G~sE~~lG~al~~ 147 (287)
.|+.+.+++.++++.|.+.|++-+=..++| .+.++.+.+.+.+
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ 61 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQ 61 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHH
Confidence 456788999999999999999976544444 2344445555444
No 94
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=54.77 E-value=1.8e+02 Score=26.88 Aligned_cols=11 Identities=0% Similarity=-0.076 Sum_probs=5.1
Q ss_pred HHHHHHHHcCC
Q 023076 265 KMAELCQLTGV 275 (287)
Q Consensus 265 ~ll~~~~~~gi 275 (287)
++++++.+.||
T Consensus 249 ~l~~~l~~~gv 259 (321)
T TIGR03822 249 ALMRAFVECRI 259 (321)
T ss_pred HHHHHHHhcCC
Confidence 44444444444
No 95
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=54.55 E-value=1e+02 Score=29.43 Aligned_cols=97 Identities=7% Similarity=0.007 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++++...+.+ ++|. - |+.++..|-+ -++.+.+|++...+- +.|=|.++.+++.++++.+ -+++
T Consensus 223 ~w~~~~A~~~~----~~l~--~-~l~~iEeP~~-------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdi 287 (395)
T cd03323 223 AWSLETAIRLA----KELE--G-VLAYLEDPCG-------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDI 287 (395)
T ss_pred CcCHHHHHHHH----HhcC--c-CCCEEECCCC-------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcE
Confidence 45666544333 3453 3 6777777653 355667788776655 6677778889999998876 4888
Q ss_pred EeecCCccCCC-chHHHHHHHHHcCCeEEEcccC
Q 023076 251 NQVQHSVVDMR-PQQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 251 ~Q~~~n~~~~~-~~~~ll~~~~~~gi~via~spl 283 (287)
+|......-.- .-.++...|+++|+.+...+..
T Consensus 288 l~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 288 PLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred EeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 88887653221 2238999999999999887653
No 96
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.42 E-value=1.3e+02 Score=26.41 Aligned_cols=91 Identities=9% Similarity=0.103 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHH-HHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTD-LKEEGKIKTVALTN-FDTERLRIILENGIPVVSN 251 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~-l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~ 251 (287)
+++...+.++ .|-+-|+..+.+=+ - .+...+.++.|.+ ..++.-=-.||+.+ .+.++++.+++.|..|.
T Consensus 25 ~~~~a~~~~~-al~~gGi~~iEiT~---~---tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi-- 95 (222)
T PRK07114 25 DVEVAKKVIK-ACYDGGARVFEFTN---R---GDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI-- 95 (222)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC---C---CCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE--
Confidence 4455554443 55667776665542 1 2234556655542 22332112588776 48999999999886554
Q ss_pred eecCCccCCCchHHHHHHHHHcCCeEEE
Q 023076 252 QVQHSVVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 252 Q~~~n~~~~~~~~~ll~~~~~~gi~via 279 (287)
.+| ....+++++|+++||.++.
T Consensus 96 ---VsP---~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 96 ---VTP---LFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred ---ECC---CCCHHHHHHHHHcCCCEeC
Confidence 343 3455999999999998874
No 97
>PLN00191 enolase
Probab=54.35 E-value=1.6e+02 Score=28.81 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEE-ec-CCCHHHHHHHHHcCCCeEE
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVA-LT-NFDTERLRIILENGIPVVS 250 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iG-vS-n~~~~~l~~~~~~~~~~~~ 250 (287)
.+++.+.+-+++.+++ .++.++..|-+. +-|+.+.+|.++.+|.-+| =+ ..+++.++++++.+ -.++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~-----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~-aad~ 363 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ-----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEK-ACNA 363 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc-----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhC-CCCE
Confidence 3566665555544333 367788877533 3466667788888887777 12 25689999998865 3677
Q ss_pred EeecCCccCCCch-HHHHHHHHHcCCeEEEc
Q 023076 251 NQVQHSVVDMRPQ-QKMAELCQLTGVKLITS 280 (287)
Q Consensus 251 ~Q~~~n~~~~~~~-~~ll~~~~~~gi~via~ 280 (287)
+++..|-+-.-.+ .++.+.|+++|+.++.-
T Consensus 364 i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 364 LLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 7777764322222 28899999999998763
No 98
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=53.16 E-value=2.1e+02 Score=27.27 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=52.8
Q ss_pred ceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CchHHHHHHHHHc
Q 023076 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLT 273 (287)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~-~~~~~ll~~~~~~ 273 (287)
|-+.+..|. +..++..+..+.+.+.++.+-+...+.+.++++++...+..++..+.||.-. ..-.++.+.|+++
T Consensus 100 D~Vvv~~p~-----Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~ 174 (405)
T PRK08776 100 DTLVVPHDA-----YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKV 174 (405)
T ss_pred CEEEEccCC-----chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHc
Confidence 555554332 4455555566555555666666656788888877544556666777777432 2334899999999
Q ss_pred CCeEEEccc
Q 023076 274 GVKLITSLP 282 (287)
Q Consensus 274 gi~via~sp 282 (287)
|+.++.=..
T Consensus 175 gi~vIvD~a 183 (405)
T PRK08776 175 GALTVVDNT 183 (405)
T ss_pred CCEEEEECC
Confidence 998885433
No 99
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=52.89 E-value=1.9e+02 Score=26.76 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHcCCCccceEEeecCCC----CCCcHHHHHHHHHHHHHcCCcc-EEEecCC---CHHHHHHHHH--cCCCeEEEeec
Q 023076 185 SRRRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEEGKIK-TVALTNF---DTERLRIILE--NGIPVVSNQVQ 254 (287)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~----~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~---~~~~l~~~~~--~~~~~~~~Q~~ 254 (287)
..++.|. |++-+|-... .+....|+.+.|+++.++=+|- .||-|.. +++.++++.+ .|-++-....+
T Consensus 159 ~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSan 235 (403)
T COG2069 159 CVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASAN 235 (403)
T ss_pred HHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeeccc
Confidence 3346774 6777775322 2223678999999988887775 4788864 5677888776 25455555555
Q ss_pred CCccCCCchHHHHHHHHHcCCeEEEcccCC
Q 023076 255 HSVVDMRPQQKMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 255 ~n~~~~~~~~~ll~~~~~~gi~via~spl~ 284 (287)
.++ .-..+.+.+.++|=.|.+|+++-
T Consensus 236 ldl----Dy~~ia~AA~ky~H~VLswt~~D 261 (403)
T COG2069 236 LDL----DYERIAEAALKYDHVVLSWTQMD 261 (403)
T ss_pred ccc----CHHHHHHHHHhcCceEEEeeccC
Confidence 554 22378999999999999999864
No 100
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=52.85 E-value=1.7e+02 Score=28.46 Aligned_cols=108 Identities=9% Similarity=0.032 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc--CCccEEEecCCC---HHHHHHHHHcCC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFD---TERLRIILENGI 246 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir~iGvSn~~---~~~l~~~~~~~~ 246 (287)
..+++.+.+.+++..+.+. .++.+-+-.|.......+.+++.|..++++ |. .+.+++.. ++.++++.+.+
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~g- 133 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDLG- 133 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHCC-
Confidence 4688888888888776652 345566666443332235578888888888 43 56777543 67788887765
Q ss_pred CeEEEeecCCccCCCch---------------------------HHHHHHHHHcCCeEEEcccCCC
Q 023076 247 PVVSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 247 ~~~~~Q~~~n~~~~~~~---------------------------~~ll~~~~~~gi~via~spl~~ 285 (287)
++.+.+.++-++.... .+-++.+.+.|+.+....++-.
T Consensus 134 -vd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIp 198 (442)
T TIGR01290 134 -VGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIP 198 (442)
T ss_pred -CCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeC
Confidence 3344444444331110 1335567788888776666543
No 101
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=52.79 E-value=1.7e+02 Score=28.14 Aligned_cols=95 Identities=18% Similarity=0.105 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC--CccEEEecC--CCHHHHHHHHHcCCCeE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVALTN--FDTERLRIILENGIPVV 249 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGvSn--~~~~~l~~~~~~~~~~~ 249 (287)
+++...+-+++.++. .+++++..|-+.. -|+.+.+|.+.- .+.-.|==+ .+++.++++++.+ ..+
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~~-----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~-a~d 331 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSEE-----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMG-VAN 331 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCcc-----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhC-CCC
Confidence 444544444444433 3677888775432 355556666654 554444322 2599999998865 477
Q ss_pred EEeecCCccCCCch-HHHHHHHHHcCCeEEE
Q 023076 250 SNQVQHSVVDMRPQ-QKMAELCQLTGVKLIT 279 (287)
Q Consensus 250 ~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via 279 (287)
++|+..+-+-.-.+ .++...|+++|+.++.
T Consensus 332 ~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 332 SILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 77888775422222 2888999999998553
No 102
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=52.54 E-value=2e+02 Score=26.90 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhcc---------------------CCCceEEEEEecccc
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTKW 166 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~---------------------r~~~~~~~v~i~tK~ 166 (287)
.+.+.-.++.++|-+.|+-+|-|-..+...+. |.+...+ .+ .+.++|-
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~-----l~~~~~~ayKIaS~E~~~~plik~iA~~~k-----PiIlSTG- 155 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDL-----LESLNPPAYKIASGEINDLPLIKYIAKKGK-----PIILSTG- 155 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHH-----HHhcCCCeEEecCccccChHHHHHHHhcCC-----CEEEEcc-
Confidence 56677788999999999999977655432221 1221111 11 1222332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHH-HHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 023076 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (287)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e-~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (287)
-.+-+.+.++++...++ |.. |+.++|+.......+++ -+.+|..|++.= ---||+|.|+...+..+.
T Consensus 156 -----ma~~~ei~~av~~~r~~-g~~--~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~ 223 (347)
T COG2089 156 -----MATIEEIEEAVAILREN-GNP--DIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLA 223 (347)
T ss_pred -----cccHHHHHHHHHHHHhc-CCC--CeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHH
Confidence 23557888888765544 433 99999985432111332 444555554443 346999999987555443
No 103
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=51.90 E-value=47 Score=28.67 Aligned_cols=67 Identities=13% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCC
Q 023076 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 256 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~Q~~~n 256 (287)
...+|.||+=+.+... .+..-.. +....+.+.. .+.++.+||. |-+++.+.++.+. ..++++|+.-+
T Consensus 17 ~~~~GaD~iGfIf~~~-SpR~V~~-~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~-~~~d~vQLHG~ 84 (207)
T PRK13958 17 ASQLPIDAIGFIHYEK-SKRHQTI-TQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILSN-TSINTIQLHGT 84 (207)
T ss_pred HHHcCCCEEEEecCCC-CcccCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHh-CCCCEEEECCC
Confidence 3459999999874332 2211112 3333333332 3568899996 7788999888764 46899999764
No 104
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=51.75 E-value=23 Score=26.86 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=36.7
Q ss_pred cCCCHHHHHHHHHcCCCeEEEeecCCccCCCc-hHHHHHHHHHcCCeEEEccc
Q 023076 231 TNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 231 Sn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~-~~~ll~~~~~~gi~via~sp 282 (287)
|.++.+.++++++.+ .++++|+...-.-.-. -..+.++|+++|+.+...+.
T Consensus 3 ~~~~~~~~~~li~~~-a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAG-AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp TSSSHHHHHHHHHTT-SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred CCCCHHHHHHHHHcC-CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 567888999998876 4788888855432212 23889999999999998875
No 105
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=51.52 E-value=2.1e+02 Score=26.95 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=49.5
Q ss_pred ceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CchHHHHHHHHHc
Q 023076 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLT 273 (287)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~-~~~~~ll~~~~~~ 273 (287)
|-+.+-.|. +......+..+...+.++-.-+...+.+.++++++...+..++..+.||.-. ...+++.+.|+++
T Consensus 91 D~Vl~~~p~-----y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~ 165 (382)
T TIGR02080 91 DLLVAPHDC-----YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAV 165 (382)
T ss_pred CEEEEcCCC-----cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHc
Confidence 555554443 3344555555555555555555556778888877644556666666776422 2344889999999
Q ss_pred CCeEEE
Q 023076 274 GVKLIT 279 (287)
Q Consensus 274 gi~via 279 (287)
|+.++.
T Consensus 166 g~~vvv 171 (382)
T TIGR02080 166 GAVVVV 171 (382)
T ss_pred CCEEEE
Confidence 988774
No 106
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.42 E-value=28 Score=30.97 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=39.5
Q ss_pred CCCccccCceeeccccCCCCCCCC---CHHHHHHHHHHHH----HcCCCEEecCC--CC-C-CcHHHHHHHHhh
Q 023076 85 GNDSLEICRVLNGMWQTSGGWGRI---DRDDAVDAMLRYA----DAGLTTFDMAD--HY-G-PAEDLYGIFINR 147 (287)
Q Consensus 85 G~tg~~vs~lglGt~~~~~~~~~~---~~~~a~~~l~~A~----~~Gin~fDTA~--~Y-G-~sE~~lG~al~~ 147 (287)
-.+|+.+|.+||.+-+-.. +|.. ..+++.++++.|+ +.|||.|--|. +| . ..|+...++++.
T Consensus 64 ~etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g 136 (287)
T COG3623 64 QETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEG 136 (287)
T ss_pred HHhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHH
Confidence 3678999999999755322 3333 3456666666665 88999998884 44 2 234444666554
No 107
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=51.16 E-value=1.1e+02 Score=26.61 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEec-CCCHHHHHHHHHcCCCeEEE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSN 251 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvS-n~~~~~l~~~~~~~~~~~~~ 251 (287)
+++.+..+. .+|.||+-+++.-. .+..- ..+...++.+.-. ++.+||. |.+.+.+.++++. .+++.+
T Consensus 11 ~~eda~~a~-----~~gad~iG~If~~~-SpR~V----s~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-~~ld~V 79 (208)
T COG0135 11 RLEDAKAAA-----KAGADYIGFIFVPK-SPRYV----SPEQAREIASAVPKVKVVGVFVNESIEEILEIAEE-LGLDAV 79 (208)
T ss_pred CHHHHHHHH-----HcCCCEEEEEEcCC-CCCcC----CHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHh-cCCCEE
Confidence 345554443 58999988875542 22222 2223344544444 8899987 6678888888775 478999
Q ss_pred eecCCccCCCchHHHHHHHHHcC-CeEE
Q 023076 252 QVQHSVVDMRPQQKMAELCQLTG-VKLI 278 (287)
Q Consensus 252 Q~~~n~~~~~~~~~ll~~~~~~g-i~vi 278 (287)
|+.-.. ..+.++..++.. +.++
T Consensus 80 QlHG~e-----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 80 QLHGDE-----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred EECCCC-----CHHHHHHHHhhcCCceE
Confidence 988652 235555555543 5444
No 108
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=50.87 E-value=1.7e+02 Score=27.64 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred EEeecCCCC----------CCcHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHH--cCCCeEEEeecCCc
Q 023076 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE--NGIPVVSNQVQHSV 257 (287)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G~Ir~iGvS-------n~~~~~l~~~~~--~~~~~~~~Q~~~n~ 257 (287)
+.||.|+.+ ...+++.+++.+...+... +.|-+= |-+.++.+++.+ .+++..++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 668987642 1126777777776665554 433322 455677666665 36778999999999
Q ss_pred cCCC-----chH---HHHHHHHHcCCeEEEcccC
Q 023076 258 VDMR-----PQQ---KMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 258 ~~~~-----~~~---~ll~~~~~~gi~via~spl 283 (287)
.... +.. ...+...++||.+....+-
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~ 328 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTR 328 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccc
Confidence 8532 222 5556667778887765543
No 109
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=50.80 E-value=1.1e+02 Score=23.98 Aligned_cols=65 Identities=14% Similarity=0.058 Sum_probs=46.8
Q ss_pred eEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCC---CccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~---dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
.+.-+.++-|.... ...+..+++.+.+..+.+.. ...|++++-.+.....++.+..+.|..+.++
T Consensus 47 ~R~G~~VsKK~~~~--AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKK--AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccc--hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34455666665432 46788899888888877642 3579999998877666688888888877655
No 110
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=50.59 E-value=1.5e+02 Score=24.87 Aligned_cols=134 Identities=10% Similarity=0.078 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (287)
+.++..++++.+++.|++.+.-...-.+..+.+.+.-+..+ ++ .+-..+ -.+++++..+++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~-----~~--~iGag~-------v~~~~~~~~a~~----- 74 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFP-----EA--LIGAGT-------VLTPEQADAAIA----- 74 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCC-----CC--EEEEEe-------CCCHHHHHHHHH-----
Confidence 67889999999999999999776554444444443332221 11 111111 234566655554
Q ss_pred cCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHH
Q 023076 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAE 268 (287)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~ 268 (287)
+|.|++ |.|... .+.. +..++.|.-.-+|++ +.+++.++.+.| .+++++ |. .... ..+.+.
T Consensus 75 ~Ga~~i-----~~p~~~----~~~~---~~~~~~~~~~i~gv~--t~~e~~~A~~~G--ad~i~~-~p-~~~~-g~~~~~ 135 (190)
T cd00452 75 AGAQFI-----VSPGLD----PEVV---KAANRAGIPLLPGVA--TPTEIMQALELG--ADIVKL-FP-AEAV-GPAYIK 135 (190)
T ss_pred cCCCEE-----EcCCCC----HHHH---HHHHHcCCcEECCcC--CHHHHHHHHHCC--CCEEEE-cC-Cccc-CHHHHH
Confidence 777654 666432 2333 334444655568888 678888887766 444444 21 1111 334455
Q ss_pred HHHHc--CCeEEEc
Q 023076 269 LCQLT--GVKLITS 280 (287)
Q Consensus 269 ~~~~~--gi~via~ 280 (287)
..++. ++.+++-
T Consensus 136 ~l~~~~~~~p~~a~ 149 (190)
T cd00452 136 ALKGPFPQVRFMPT 149 (190)
T ss_pred HHHhhCCCCeEEEe
Confidence 54432 3565553
No 111
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=50.56 E-value=1.9e+02 Score=25.88 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=72.6
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeE
Q 023076 170 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 249 (287)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~ 249 (287)
....+.+...+..+-..+-+++++|-|=.+-+++.-.++..|++++.|.|+++|-+- +=-++-++-..+++.+.| +.
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V-lPY~~dD~v~arrLee~G--ca 153 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV-LPYTTDDPVLARRLEEAG--CA 153 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE-eeccCCCHHHHHHHHhcC--ce
Confidence 446688888888899999999999999888888877788899999999999999542 233444555566666544 44
Q ss_pred EEeecCCccCCC----chHHHHHHHHHcCCeEEEcc
Q 023076 250 SNQVQHSVVDMR----PQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 250 ~~Q~~~n~~~~~----~~~~ll~~~~~~gi~via~s 281 (287)
+++---+|+-.. ....+.-..++.++++|.=.
T Consensus 154 avMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDA 189 (262)
T COG2022 154 AVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDA 189 (262)
T ss_pred EeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeC
Confidence 444433333110 01133334455577777533
No 112
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=50.05 E-value=2.1e+02 Score=26.37 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHc-CCCEEecCCCCCC----cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADA-GLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~-Gin~fDTA~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (287)
.+.++..+++++.-+. ||+-+--+. |+ +...|.+.++....- ..+..+.+.|+... ..+..+.+.+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i---~~v~~iri~Tr~~v----~~p~rit~el 189 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAI---DHVKIVRFHTRVPV----ADPARVTPAL 189 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhC---CCccEEEEeCCCcc----cChhhcCHHH
Confidence 4557777788766544 787542211 22 222345555543221 11223456666421 1233344444
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEE------EecCCCHHHHHHHHH
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV------ALTNFDTERLRIILE 243 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i------GvSn~~~~~l~~~~~ 243 (287)
-+.|++.|.. ..+.+|...+... .++++++++.|++.|..-.+ |+ |.+.+.+.++.+
T Consensus 190 l~~L~~~g~~--v~i~l~~~h~~el-~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~ 252 (321)
T TIGR03822 190 IAALKTSGKT--VYVALHANHAREL-TAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMR 252 (321)
T ss_pred HHHHHHcCCc--EEEEecCCChhhc-CHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHH
Confidence 5566667732 3467787544333 57899999999999962211 33 577777766554
No 113
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=49.91 E-value=2.2e+02 Score=26.51 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+-+++ |+. .++.++..|-+.. -++.+.++++.--|. +.|=+.++.+++.++++.+ -+++
T Consensus 196 ~~~~~~A~~~~~~-l~~-----~~i~~iEeP~~~~-----d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~-~~d~ 263 (355)
T cd03321 196 SLTVPEAIERGQA-LDQ-----EGLTWIEEPTLQH-----DYEGHARIASALRTPVQMGENWLGPEEMFKALSAG-ACDL 263 (355)
T ss_pred CcCHHHHHHHHHH-HHc-----CCCCEEECCCCCc-----CHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhC-CCCe
Confidence 4566654443332 333 3566677765432 345567777764433 5666778999999998865 4788
Q ss_pred EeecCCccCCCch-HHHHHHHHHcCCeEEEc
Q 023076 251 NQVQHSVVDMRPQ-QKMAELCQLTGVKLITS 280 (287)
Q Consensus 251 ~Q~~~n~~~~~~~-~~ll~~~~~~gi~via~ 280 (287)
+|+..+.+=.-.+ .++.++|+++|+.++..
T Consensus 264 i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 264 VMPDLMKIGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred EecCHhhhCCHHHHHHHHHHHHHcCCeeccc
Confidence 8888765422122 28899999999998654
No 114
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=49.75 E-value=1.6e+02 Score=25.00 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEec
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDM 130 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDT 130 (287)
.|.+++.++++.+++.|++..|.
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i 31 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIEL 31 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHH
Confidence 37789999999999999876654
No 115
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=49.62 E-value=2e+02 Score=26.00 Aligned_cols=153 Identities=13% Similarity=0.163 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcC-CCEEec-------C---CCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHH
Q 023076 109 DRDDAVDAMLRYADAG-LTTFDM-------A---DHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~G-in~fDT-------A---~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (287)
+.++..+..+.+-+.| +..||- + ..|+...+.+-+.++..... + ++.|.-|..++ .+.
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~~-----~~~ 170 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV----V--KVPVIVKLTPN-----VTD 170 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh----c--CCCEEEEcCCC-----chh
Confidence 5677788888888888 888876 1 12344455666666654322 1 23344454432 122
Q ss_pred HHHHHHHHHHHcCCCccceEE-eecC--CCC--------------CC-cHHHHHHHHHHHHHcCCccEEEecCC-CHHHH
Q 023076 178 VRESIDVSRRRMDVPCLDMLQ-FHWW--DYS--------------NP-GYLDALNHLTDLKEEGKIKTVALTNF-DTERL 238 (287)
Q Consensus 178 i~~~le~SL~rLg~dyiDl~~-lH~p--~~~--------------~~-~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l 238 (287)
+. .+-+.|+..|.|.|++.= ++.. +.. .+ ...-.++.+.++++.=.+--||+... +++.+
T Consensus 171 ~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da 249 (301)
T PRK07259 171 IV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDA 249 (301)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 22 233457778888776531 0110 000 00 01124666677777656888898875 79999
Q ss_pred HHHHHcCCCeEEEeecCCccC-C----CchHHHHHHHHHcCC
Q 023076 239 RIILENGIPVVSNQVQHSVVD-M----RPQQKMAELCQLTGV 275 (287)
Q Consensus 239 ~~~~~~~~~~~~~Q~~~n~~~-~----~~~~~ll~~~~~~gi 275 (287)
.+++..| .+.+|+-=-++. + ...+++-.+++++|.
T Consensus 250 ~~~l~aG--Ad~V~igr~ll~~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 250 IEFIMAG--ASAVQVGTANFYDPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHcC--CCceeEcHHHhcCcHHHHHHHHHHHHHHHHcCC
Confidence 9998877 466665432221 1 123366677777775
No 116
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.49 E-value=1.8e+02 Score=27.71 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=58.9
Q ss_pred eEEeecCCCC----------CCcHHHHHHHHHHHH-HcCC---ccEEEec--CCCHHHHHHHHH--cCC---CeEEEeec
Q 023076 196 MLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILE--NGI---PVVSNQVQ 254 (287)
Q Consensus 196 l~~lH~p~~~----------~~~~~e~~~aL~~l~-~~G~---Ir~iGvS--n~~~~~l~~~~~--~~~---~~~~~Q~~ 254 (287)
.+.||.++++ ...++++++++.+.. +.|+ |.++=+. |-+.++++++.+ .+. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 3678987642 123788898888776 4453 4555555 445555555544 234 67899999
Q ss_pred CCccCC----Cc-h---HHHHHHHHHcCCeEEEcccCCC
Q 023076 255 HSVVDM----RP-Q---QKMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 255 ~n~~~~----~~-~---~~ll~~~~~~gi~via~spl~~ 285 (287)
||++.. .+ . .++.+..+++||.+....+.|.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 999642 11 1 2577888999999988766553
No 117
>PTZ00081 enolase; Provisional
Probab=49.40 E-value=2.1e+02 Score=27.87 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC--CccEEEe--cCCCHHHHHHHHHcCCCe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGv--Sn~~~~~l~~~~~~~~~~ 248 (287)
.+++.+.+-+.+.++.+ +++++..|-+. +-|+.+.+|.++= .|.-+|= +..+++.++++++.+ ..
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~-----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~-aa 349 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ-----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKK-AC 349 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc-----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhC-CC
Confidence 57777777777777766 46777876543 2345556665543 5655553 345799999998865 47
Q ss_pred EEEeecCCccCCCch-HHHHHHHHHcCCeEEE
Q 023076 249 VSNQVQHSVVDMRPQ-QKMAELCQLTGVKLIT 279 (287)
Q Consensus 249 ~~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via 279 (287)
+++|+..|-+-.-.+ .++...|+++|+.++.
T Consensus 350 d~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 350 NALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 777777775322222 2788999999998765
No 118
>PF06174 DUF987: Protein of unknown function (DUF987); InterPro: IPR009329 This is a family of bacterial proteins that are related to the hypothetical protein YeeT.
Probab=48.85 E-value=5.1 Score=27.65 Aligned_cols=9 Identities=56% Similarity=1.357 Sum_probs=8.0
Q ss_pred cccccCcch
Q 023076 5 HCHFTGRNF 13 (287)
Q Consensus 5 ~~~~~~~~~ 13 (287)
-||||||.+
T Consensus 35 ~~hYtg~~V 43 (66)
T PF06174_consen 35 VCHYTGRDV 43 (66)
T ss_pred cccccCccc
Confidence 499999987
No 119
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=48.61 E-value=2.3e+02 Score=27.18 Aligned_cols=20 Identities=30% Similarity=0.202 Sum_probs=11.8
Q ss_pred HHHHHHH-HcCCeEEEcc-cCC
Q 023076 265 KMAELCQ-LTGVKLITSL-PFL 284 (287)
Q Consensus 265 ~ll~~~~-~~gi~via~s-pl~ 284 (287)
.+-++.+ +.|++.+... |++
T Consensus 235 ~~a~~L~e~~GiP~~~~~~p~G 256 (428)
T cd01965 235 KAAKALEEKFGVPYILFPTPIG 256 (428)
T ss_pred HHHHHHHHHHCCCeeecCCCcC
Confidence 3444443 4788887665 554
No 120
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=48.39 E-value=2.5e+02 Score=26.83 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred HHcCCCccceEEeecCCC----CCCcHHHHHHHHHHHHHc-CCccEEEec---CCCHHHHHHHHHc--CCCeEEEeecCC
Q 023076 187 RRMDVPCLDMLQFHWWDY----SNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILEN--GIPVVSNQVQHS 256 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~----~~~~~~e~~~aL~~l~~~-G~Ir~iGvS---n~~~~~l~~~~~~--~~~~~~~Q~~~n 256 (287)
+.+| +|++.||.-.. .+...++..++.++..+. +.=--|+-| ..+++.++++++. |-++-++.....
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e 226 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLD 226 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCch
Confidence 4555 57888886322 222345566666665333 332234444 5688889988873 434554443332
Q ss_pred ccCCCchHHHHHHHHHcCCeEEEcccCC
Q 023076 257 VVDMRPQQKMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 257 ~~~~~~~~~ll~~~~~~gi~via~spl~ 284 (287)
. .-+++.+.|+++|..+++++|..
T Consensus 227 ~----Ny~~ia~lAk~yg~~Vvv~s~~D 250 (389)
T TIGR00381 227 L----DYEKIANAAKKYGHVVLSWTIMD 250 (389)
T ss_pred h----hHHHHHHHHHHhCCeEEEEcCCc
Confidence 1 23388999999999999998764
No 121
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.36 E-value=56 Score=29.26 Aligned_cols=67 Identities=6% Similarity=0.005 Sum_probs=48.3
Q ss_pred HHHHHHcCCccEEEe--cCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccC
Q 023076 216 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 216 L~~l~~~G~Ir~iGv--Sn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl 283 (287)
|.+-.++|+. .+|+ ..-++...+.+...|+++.++-.|+++++...-..++..|+..|+..+..-|-
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 3444455764 3443 33455556656567899999999999998776668999999999988877653
No 122
>PLN02540 methylenetetrahydrofolate reductase
Probab=47.83 E-value=3.1e+02 Score=27.68 Aligned_cols=150 Identities=13% Similarity=0.189 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCC--cHHHHH--HHHhhh-hccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDLYG--IFINRV-RRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~lG--~al~~~-~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (287)
+...+.+++-.+.|-.|+|....=|. .+..+. ..+++. +.+ .-..++.. +.++..+...|++.
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie------~i~HLTCr------d~n~~~L~~~L~~a 82 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVE------TMMHLTCT------NMPVEKIDHALETI 82 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCC------eeEEeeec------CCCHHHHHHHHHHH
Confidence 44555566666889999998766553 333332 222221 111 11222221 45667777777665
Q ss_pred HHHcCCCccceEEeecCCCCC--------CcHHHHHHHHHHHHHc-CCccEEEecCCCH------------------HHH
Q 023076 186 RRRMDVPCLDMLQFHWWDYSN--------PGYLDALNHLTDLKEE-GKIKTVALTNFDT------------------ERL 238 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~--------~~~~e~~~aL~~l~~~-G~Ir~iGvSn~~~------------------~~l 238 (287)
..+|+.. ++.|-...+.. ..+..+.+-++.+++. |....|||+.|.. ..+
T Consensus 83 -~~~GIrN--ILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl 159 (565)
T PLN02540 83 -KSNGIQN--ILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDL 159 (565)
T ss_pred -HHCCCCE--EEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHH
Confidence 7888763 45454321111 1133355555555554 5567889986531 234
Q ss_pred HHHH---HcCCCeEEEeecCCccCCCchHHHHHHHHHcC--CeEE
Q 023076 239 RIIL---ENGIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLI 278 (287)
Q Consensus 239 ~~~~---~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~g--i~vi 278 (287)
..+. +.|..+.+-|.-|+. ..-.+.++.|++.| +.|+
T Consensus 160 ~~Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~vPIi 201 (565)
T PLN02540 160 AYLKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGITCPIV 201 (565)
T ss_pred HHHHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCCCCEE
Confidence 4443 357778888888885 23338889999998 4544
No 123
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=47.80 E-value=2.1e+02 Score=26.94 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred EEeecCCCC----------CCcHHHHHHHHHHHHH-cC---CccEEEecC--CCHHHHHHHHH--cCCCeEEEeecCCcc
Q 023076 197 LQFHWWDYS----------NPGYLDALNHLTDLKE-EG---KIKTVALTN--FDTERLRIILE--NGIPVVSNQVQHSVV 258 (287)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~-~G---~Ir~iGvSn--~~~~~l~~~~~--~~~~~~~~Q~~~n~~ 258 (287)
+.||.++++ ...++++++++.++.+ .| .|+++=+.+ -+.++++++.+ .+.++.++-++||+.
T Consensus 219 iSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~ 298 (355)
T TIGR00048 219 ISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPF 298 (355)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccC
Confidence 668987632 1126788888877644 44 234444443 34577766655 256678888999986
Q ss_pred CC----CchH----HHHHHHHHcCCeEEEcccCC
Q 023076 259 DM----RPQQ----KMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 259 ~~----~~~~----~ll~~~~~~gi~via~spl~ 284 (287)
.. .+.. .+.++.+++|+.++.....|
T Consensus 299 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G 332 (355)
T TIGR00048 299 PEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRG 332 (355)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 42 1211 45667788899998876655
No 124
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=47.49 E-value=2.3e+02 Score=27.50 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHHc--CCCeEEEeecCCccCCCchHHHHHHHHHcCC
Q 023076 209 YLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGV 275 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~~--~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi 275 (287)
.++..++++.+++.|.--. +|+-+.+.+.+++.++. ...++.++ ++++...+..++.+.+++.|+
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~--~~~l~P~PGT~l~~~~~~~g~ 392 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ--VSLAAPYPGTELYDQAKQNGW 392 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee--eeecccCCCcHHHHHHHHCCC
Confidence 6678888889999986443 35556677777665542 23344333 445555567788888888875
No 125
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=47.31 E-value=2.3e+02 Score=28.11 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=12.5
Q ss_pred HHHHH-HHcCCeEEEcccCC
Q 023076 266 MAELC-QLTGVKLITSLPFL 284 (287)
Q Consensus 266 ll~~~-~~~gi~via~spl~ 284 (287)
+-++. ++.|++++...|+|
T Consensus 224 ~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 224 AARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred HHHHHHHHhCCccccccccc
Confidence 43444 35589888777876
No 126
>PRK15108 biotin synthase; Provisional
Probab=46.31 E-value=2.5e+02 Score=26.19 Aligned_cols=108 Identities=12% Similarity=0.091 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCCeEE
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPVVS 250 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn--~~~~~l~~~~~~~~~~~~ 250 (287)
.+++.|.+.++. ....|...+ .....+.++....++...+.+..+++.|. .+.+|+ .+.+.++++.+.|+.-..
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 577777777664 456787776 23333323322235566666677776664 343454 567788888777643211
Q ss_pred Eeec-----CCccC--CCchH--HHHHHHHHcCCeEEEcccCC
Q 023076 251 NQVQ-----HSVVD--MRPQQ--KMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 251 ~Q~~-----~n~~~--~~~~~--~ll~~~~~~gi~via~spl~ 284 (287)
+-++ |.=+. ...++ +.++.+++.|+.+-+---+|
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G 194 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG 194 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe
Confidence 1111 11111 11122 67777888887665443443
No 127
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=45.97 E-value=2.2e+02 Score=25.46 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCC
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMAD 132 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~ 132 (287)
+.++..++++.-.+.|+..++...
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC
Confidence 348888999998899999999853
No 128
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=45.94 E-value=2.8e+02 Score=26.59 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC--CccEEEe--cCCCHHHHHHHHHcCCCe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG--KIKTVAL--TNFDTERLRIILENGIPV 248 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G--~Ir~iGv--Sn~~~~~l~~~~~~~~~~ 248 (287)
++++...+-+.+.++.+ +++++..|-+..+ |+.+.+|.++- .+.-+|= ..++++.+.++++.+ ..
T Consensus 261 ~t~~eai~~~~~l~e~~-----~i~~iEdPl~~~D-----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~-a~ 329 (408)
T cd03313 261 LTSEELIDYYKELVKKY-----PIVSIEDPFDEDD-----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKK-AA 329 (408)
T ss_pred cCHHHHHHHHHHHHHhC-----CcEEEEeCCCCcC-----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhC-CC
Confidence 45566655555544443 5788888765433 44456666663 4443332 224799999998876 47
Q ss_pred EEEeecCCccCCCch-HHHHHHHHHcCCeEEE
Q 023076 249 VSNQVQHSVVDMRPQ-QKMAELCQLTGVKLIT 279 (287)
Q Consensus 249 ~~~Q~~~n~~~~~~~-~~ll~~~~~~gi~via 279 (287)
+++|+..+-+-.-.+ .++...|+++|+.++.
T Consensus 330 d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 330 NALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 777877775322222 2788999999999854
No 129
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=45.23 E-value=1.4e+02 Score=22.99 Aligned_cols=64 Identities=13% Similarity=0.048 Sum_probs=45.8
Q ss_pred eEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCC---CccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~---dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
.+.-+.++-|.+. ...+..+++.+.+..+.+.. ...|++++-.+.....++.+..+.|..+.+.
T Consensus 38 ~R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 3445666666543 56788898888888876642 3579999998877666688888777777654
No 130
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=45.05 E-value=1.7e+02 Score=27.48 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+ +-+.|.++|+++|++- +|... ++-++.+..+.+.+. .+-.+.+....+.++.+.+.|.+...
T Consensus 18 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~ 89 (363)
T TIGR02090 18 SLTVEQKVE-IARKLDELGVDVIEAG---FPIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIH 89 (363)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEE
Confidence 345555444 4445899999999974 33221 223556666665554 45556667788889999888755443
Q ss_pred EeecCCccC------CCc------hHHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~~------~~~------~~~ll~~~~~~gi~vi 278 (287)
+-+..|..+ ... -.+.+++++++|+.+.
T Consensus 90 i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 90 TFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 333333321 111 1167789999998653
No 131
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=44.75 E-value=88 Score=29.88 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=55.6
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCC--c-cEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCch-HHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGK--I-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAEL 269 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~--I-r~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~-~~ll~~ 269 (287)
+|+.++..|-+. +-++.+.+|++.-. | -.-|-+.++...++++++.+ .++++|....-.-.-.+ .++...
T Consensus 234 ~~l~wiEEPl~~-----~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~-a~Divq~d~~~~GGit~~~kia~l 307 (394)
T PRK15440 234 YGLKWIEECLPP-----DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMG-CIDIIQPDVGWCGGLTELVKIAAL 307 (394)
T ss_pred cCCcceeCCCCc-----ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcC-CCCEEeCCccccCCHHHHHHHHHH
Confidence 456666665432 23556677777654 2 23477888999999999876 48888988775422222 388999
Q ss_pred HHHcCCeEEEc
Q 023076 270 CQLTGVKLITS 280 (287)
Q Consensus 270 ~~~~gi~via~ 280 (287)
|+.+|+.++..
T Consensus 308 A~a~gi~~~pH 318 (394)
T PRK15440 308 AKARGQLVVPH 318 (394)
T ss_pred HHHcCCeeccc
Confidence 99999998764
No 132
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=44.40 E-value=2.6e+02 Score=26.01 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred HcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccC-CCCCCCCHHHHHHHHHHH--HHHcCCCc-cce-
Q 023076 122 DAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWV-PPPVKMTSSIVRESIDVS--RRRMDVPC-LDM- 196 (287)
Q Consensus 122 ~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~-~~~~~~~~~~i~~~le~S--L~rLg~dy-iDl- 196 (287)
..|+.||||- |.... +=+.|+..+.. .+|..++.--+-. ..+.......+.+.++-. -+++|..- +|+
T Consensus 53 ~~Gvkf~d~n---g~~qD-~~~iLK~~GvN---yvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 53 NSGVKFFDTN---GVRQD-ALQILKNHGVN---YVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HcCceEEccC---ChHHH-HHHHHHHcCcC---eEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc
Confidence 6799999986 33333 34566766655 6677766544321 112223344555555433 34566542 233
Q ss_pred EEeecCCCCCCcHHHHHHHH--HHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeec
Q 023076 197 LQFHWWDYSNPGYLDALNHL--TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (287)
Q Consensus 197 ~~lH~p~~~~~~~~e~~~aL--~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~ 254 (287)
|.=||-||.......+|+.| ++++++ |=.|+...+..+.+.|+.|+.+|+-
T Consensus 126 YSDfwaDPakQ~kPkaW~~l~fe~lk~a-------vy~yTk~~l~~m~~eGi~pdmVQVG 178 (403)
T COG3867 126 YSDFWADPAKQKKPKAWENLNFEQLKKA-------VYSYTKYVLTTMKKEGILPDMVQVG 178 (403)
T ss_pred chhhccChhhcCCcHHhhhcCHHHHHHH-------HHHHHHHHHHHHHHcCCCccceEec
Confidence 22234455432233455543 233322 2345556666666667777777764
No 133
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=44.15 E-value=2.6e+02 Score=25.81 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCC---------cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGP---------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~---------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~ 179 (287)
+.++..+.++.+++.|++.|=.--..|. ..+.+ +++++.-.+.. ++.+-. ...++++...
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g~~~-----~l~vDa-----n~~~~~~~A~ 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVGYDV-----DLMLDC-----YMSWNLNYAI 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhCCCC-----cEEEEC-----CCCCCHHHHH
Confidence 4566667778888999998854311111 01111 22322111111 111111 1235655544
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCcc
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVV 258 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~ 258 (287)
+- +++| +..|++++..|-+. +-++.+.+|+++..|. +.|=|.++...++++++.+ .++++|+..+-.
T Consensus 189 ~~----~~~l--~~~~~~~iEeP~~~-----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~-a~d~i~~d~~~~ 256 (341)
T cd03327 189 KM----ARAL--EKYELRWIEEPLIP-----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGR-AVDILQPDVNWV 256 (341)
T ss_pred HH----HHHh--hhcCCccccCCCCc-----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcC-CCCEEecCcccc
Confidence 32 2333 22466777766532 2355667788877666 6677778999999999876 488888887654
Q ss_pred CCCc-hHHHHHHHHHcCCeEEEc
Q 023076 259 DMRP-QQKMAELCQLTGVKLITS 280 (287)
Q Consensus 259 ~~~~-~~~ll~~~~~~gi~via~ 280 (287)
-.-. -.++...|+++|+.+...
T Consensus 257 GGit~~~~i~~~A~~~g~~~~~h 279 (341)
T cd03327 257 GGITELKKIAALAEAYGVPVVPH 279 (341)
T ss_pred CCHHHHHHHHHHHHHcCCeeccc
Confidence 2222 238999999999998765
No 134
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=43.92 E-value=2.2e+02 Score=24.78 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEE--------EEeccccCCCCCCCCHHHHHHH
Q 023076 110 RDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDK--------VRGLTKWVPPPVKMTSSIVRES 181 (287)
Q Consensus 110 ~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~--------v~i~tK~~~~~~~~~~~~i~~~ 181 (287)
.+++.+++ +.|...+..+...-..-..+.++.+..+.++. .+-.+ ..+.++.|......+.. .
T Consensus 83 ~~d~~~~l----~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i-~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~----~ 153 (243)
T cd04731 83 LEDARRLL----RAGADKVSINSAAVENPELIREIAKRFGSQCV-VVSIDAKRRGDGGYEVYTHGGRKPTGLDAV----E 153 (243)
T ss_pred HHHHHHHH----HcCCceEEECchhhhChHHHHHHHHHcCCCCE-EEEEEeeecCCCceEEEEcCCceecCCCHH----H
Confidence 35554444 46888777665432233445666665533322 12222 22334434322122222 2
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHc-CCCeEEEeecCCccC
Q 023076 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILEN-GIPVVSNQVQHSVVD 259 (287)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~-~~~~~~~Q~~~n~~~ 259 (287)
+-+.++.+|. |.+.+|..+.......--|+.+.++++.-.+.-|.... .+++.++++++. + ++.+.+---+.+
T Consensus 154 ~~~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g--~dgv~vg~al~~ 228 (243)
T cd04731 154 WAKEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGG--ADAALAASIFHF 228 (243)
T ss_pred HHHHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCC--CCEEEEeHHHHc
Confidence 2233455665 55666654331110001345556666665566665554 468899988875 4 333333211111
Q ss_pred -CCchHHHHHHHHHc
Q 023076 260 -MRPQQKMAELCQLT 273 (287)
Q Consensus 260 -~~~~~~ll~~~~~~ 273 (287)
.....++..+|++|
T Consensus 229 ~~~~~~~~~~~~~~~ 243 (243)
T cd04731 229 GEYTIAELKEYLAER 243 (243)
T ss_pred CCCCHHHHHHHHhhC
Confidence 12334677777764
No 135
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=43.03 E-value=3.2e+02 Score=26.47 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeec-CCC-----------CCC-cHHH---HH-HHHHHHHHcCCccEEEecCCC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNP-GYLD---AL-NHLTDLKEEGKIKTVALTNFD 234 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~-----------~~~-~~~e---~~-~aL~~l~~~G~Ir~iGvSn~~ 234 (287)
..+.+.+++.++..+ .|+.++|++|.+.- |+. ..+ +.++ .+ .+.+.|.+.|. +.+++|||.
T Consensus 226 gqT~e~~~~~l~~~~-~l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~fa 303 (449)
T PRK09058 226 GQTPEIWQQDLAIVR-DLGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWA 303 (449)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeee
Confidence 457788888887655 48999999998763 211 001 1222 22 34566778887 568999986
Q ss_pred H
Q 023076 235 T 235 (287)
Q Consensus 235 ~ 235 (287)
.
T Consensus 304 r 304 (449)
T PRK09058 304 R 304 (449)
T ss_pred c
Confidence 4
No 136
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.87 E-value=1e+02 Score=26.42 Aligned_cols=72 Identities=15% Similarity=0.294 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH----HHHHHHHHcCCCeEEE
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVSN 251 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~----~~l~~~~~~~~~~~~~ 251 (287)
..+.+.+++.++.+|.+. ++ + .+.... ..+..+.++++.++| +..|=++..++ ..++++.+.|+|+..+
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~--~--~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EI--V--FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EE--E--EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EE--e--CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 567888899999998643 22 2 222222 577888889999888 88888876554 5677777778766654
Q ss_pred eec
Q 023076 252 QVQ 254 (287)
Q Consensus 252 Q~~ 254 (287)
-..
T Consensus 87 d~~ 89 (257)
T PF13407_consen 87 DSD 89 (257)
T ss_dssp SST
T ss_pred ecc
Confidence 433
No 137
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=42.63 E-value=2.5e+02 Score=25.55 Aligned_cols=100 Identities=9% Similarity=0.054 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEE-eecCCCCCCc-HHH---HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG-YLD---ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~-~~e---~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~ 248 (287)
+.+.+.+..++.+ .-|-|.||+=- -.+|+...-+ -+| +...++.++++-.+ -|.|=+++++.++++++.|.++
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4555555544433 45778888752 2335433211 223 55566777654222 4778889999999999888543
Q ss_pred EEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 249 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 249 ~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
+|-+. . + .+.+.++.+++.|.+++.+-
T Consensus 114 -INDI~-g-~---~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 -INDIR-S-L---SEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred -EEECC-C-C---CCHHHHHHHHHcCCCEEEEc
Confidence 23331 2 2 13367788888888888763
No 138
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=42.61 E-value=2.1e+02 Score=25.71 Aligned_cols=78 Identities=10% Similarity=-0.002 Sum_probs=49.8
Q ss_pred CCHH-HHHHHHHHHHHcCCCEEecCCCCCC---c-H--HHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHH
Q 023076 108 IDRD-DAVDAMLRYADAGLTTFDMADHYGP---A-E--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRE 180 (287)
Q Consensus 108 ~~~~-~a~~~l~~A~~~Gin~fDTA~~YG~---s-E--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~ 180 (287)
.+++ +..++.+.+.++|..|+=|+.-|+. . | +++-+.+++.... . ...++.+.- -.+.+...+
T Consensus 143 L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~-~---~vgIKAsGG------Irt~~~A~~ 212 (257)
T PRK05283 143 LKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVA-K---TVGFKPAGG------VRTAEDAAQ 212 (257)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccC-C---CeeEEccCC------CCCHHHHHH
Confidence 3445 4788999999999999999998853 2 2 2233333221100 0 013333221 247788888
Q ss_pred HHHHHHHHcCCCccc
Q 023076 181 SIDVSRRRMDVPCLD 195 (287)
Q Consensus 181 ~le~SL~rLg~dyiD 195 (287)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 999999999998876
No 139
>PRK07329 hypothetical protein; Provisional
Probab=42.57 E-value=2.4e+02 Score=24.82 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=53.3
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCC--------CCcHHHHH----HHHHHHHHcC-CccEEEecC----------CCH-
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDAL----NHLTDLKEEG-KIKTVALTN----------FDT- 235 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~--------~~~~~e~~----~aL~~l~~~G-~Ir~iGvSn----------~~~- 235 (287)
..+++-|.+...||+ +..+|+.+.. ..+.++.+ +.+.++.+.+ .+..+|==. .+.
T Consensus 83 ~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~ 161 (246)
T PRK07329 83 DDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELK 161 (246)
T ss_pred HHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcChH
Confidence 344555666677777 7778975321 11234444 6777777776 666665221 111
Q ss_pred ---HH----HHHHHHcCCCeEEEeecCC-ccCCCchHHHHHHHHHcCCeEEE
Q 023076 236 ---ER----LRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 236 ---~~----l~~~~~~~~~~~~~Q~~~n-~~~~~~~~~ll~~~~~~gi~via 279 (287)
+. ++.+.+.+..+.+|-..+. ......-..+++.|++.|+..+.
T Consensus 162 ~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~ 213 (246)
T PRK07329 162 AFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFS 213 (246)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcchHHHHHHHHHcCCeEEE
Confidence 11 2333345666776664331 11111224678999999986433
No 140
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=42.28 E-value=59 Score=31.23 Aligned_cols=63 Identities=25% Similarity=0.381 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHHHcCC
Q 023076 181 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------ALTNFDTERLRIILENGI 246 (287)
Q Consensus 181 ~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------GvSn~~~~~l~~~~~~~~ 246 (287)
+++...++|.-.-.|.+.+|.-... =++||+|.++|.+..+ |+....+++++.+.+.|+
T Consensus 199 ~V~~~~~~Le~~G~Ev~VFHAtG~G-------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GI 271 (403)
T PF06792_consen 199 CVDAIRERLEEEGYEVLVFHATGTG-------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGI 271 (403)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCc-------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCC
Confidence 3444444444445799999975432 2568999999998865 566678899999988887
Q ss_pred CeEE
Q 023076 247 PVVS 250 (287)
Q Consensus 247 ~~~~ 250 (287)
|-.+
T Consensus 272 P~Vv 275 (403)
T PF06792_consen 272 PQVV 275 (403)
T ss_pred CEEE
Confidence 6444
No 141
>PRK06361 hypothetical protein; Provisional
Probab=42.11 E-value=2.1e+02 Score=24.20 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCCEEecCCCCCC--cHHHH---HHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 112 DAVDAMLRYADAGLTTFDMADHYGP--AEDLY---GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 112 ~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~l---G~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
...++++.|.+.|+..|=-+++... ....+ -+.+++.... . . .++....-... ..++.+ ..+.+.+
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~-~-~--i~v~~GiE~~~----~~~~~~-~~~~~~~ 81 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELY-W-D--IEVIPGVELTH----VPPKLI-PKLAKKA 81 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhc-C-C--CEEEEEEEEcc----cCchhh-chHHHHH
Confidence 4577999999999998866655421 11111 1112211110 0 1 13333322211 122233 2333555
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEeecCCccCCCchHH
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMRPQQK 265 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ 265 (287)
.+++ .|+..+|.+....+ . ....-.++.+.|.+.-+|=-. ...+.++.+.+.++.+.++- +.........
T Consensus 82 ~~~~---~~~~svH~~~~~~~-~--~~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~~lEin~---~~~~~~~~~~ 152 (212)
T PRK06361 82 RDLG---AEIVVVHGETIVEP-V--EEGTNLAAIECEDVDILAHPGLITEEEAELAAENGVFLEITA---RKGHSLTNGH 152 (212)
T ss_pred HHCC---CEEEEECCCCcchh-h--hhhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCeEEEEEC---CCCcccchHH
Confidence 5664 46668995433222 1 111114577888887766332 23444555555665455442 1112345558
Q ss_pred HHHHHHHcCCeEEEccc
Q 023076 266 MAELCQLTGVKLITSLP 282 (287)
Q Consensus 266 ll~~~~~~gi~via~sp 282 (287)
+++.+++.|+.++.-|.
T Consensus 153 ~l~~a~~~gi~vv~~SD 169 (212)
T PRK06361 153 VARIAREAGAPLVINTD 169 (212)
T ss_pred HHHHHHHhCCcEEEECC
Confidence 99999999999877654
No 142
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=42.09 E-value=2.8e+02 Score=25.45 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHH----HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHH
Q 023076 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDL----YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (287)
Q Consensus 107 ~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~----lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (287)
..+.++..++++.+.+.|+..|.-.. | |.+ +-+.++...... .+ ..+.++|... . +.+ .
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--G--EPll~~~l~~li~~i~~~~--gi-~~v~itTNG~-----l----l~~-~ 104 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--G--EPLLRKDLVELVARLAALP--GI-EDIALTTNGL-----L----LAR-H 104 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--c--cccccCCHHHHHHHHHhcC--CC-CeEEEEeCch-----h----HHH-H
Confidence 36778999999999999988776432 3 222 123333221110 11 1455565321 1 111 2
Q ss_pred HHHHHHcCCCccceEEeecCCCC--------CCcHHHHHHHHHHHHHcCCc--c--EEEecCCCHHHHHHHHH
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYS--------NPGYLDALNHLTDLKEEGKI--K--TVALTNFDTERLRIILE 243 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~--------~~~~~e~~~aL~~l~~~G~I--r--~iGvSn~~~~~l~~~~~ 243 (287)
-+.|.+.|++++- +.++..++. ...++++++.++.+++.|.- + .+-+.+.+.+++.++++
T Consensus 105 ~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 105 AKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred HHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 3446666765543 234443321 22478999999999999853 2 23334567777777654
No 143
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=42.07 E-value=1.7e+02 Score=23.41 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=45.0
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCC----CccceEEeecCCCCCCcHHHHHHHHHHHHH
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 221 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~----dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~ 221 (287)
+.-+.++-|++. ...+..+++-+.++++.+.. ...|++++-.+.....++.+..+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 445666666543 56788999999999887643 568999999987666667777777776654
No 144
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=41.94 E-value=80 Score=28.12 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=45.6
Q ss_pred HHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 218 DLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 218 ~l~~~G~Ir~iG--vSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
+-.++|+. .+| ++.-++...+.+...|+++.++=.|+++++...-..++..++..|+..+..-|
T Consensus 5 ~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp 70 (249)
T TIGR03239 5 QDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPP 70 (249)
T ss_pred HHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECC
Confidence 33344654 344 33345555665656789999999999998876666888999999998887665
No 145
>PF14387 DUF4418: Domain of unknown function (DUF4418)
Probab=41.48 E-value=13 Score=29.66 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=12.5
Q ss_pred cccccccCcchhhhhhh
Q 023076 3 AMHCHFTGRNFISKSLS 19 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (287)
.|.|||||+-.+-=++-
T Consensus 31 ~M~Ch~tg~a~~~ig~v 47 (124)
T PF14387_consen 31 HMKCHWTGQAVTGIGAV 47 (124)
T ss_pred eeeehhHHHHHHHHHHH
Confidence 68999999977544443
No 146
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.24 E-value=3.6e+02 Score=26.49 Aligned_cols=102 Identities=8% Similarity=0.006 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecC----C--CHHHHHHHHHcC
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTN----F--DTERLRIILENG 245 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn----~--~~~~l~~~~~~~ 245 (287)
.+++.|.+.++...++.|+.. +.+.+.++... ...+.+-+++++++| .-..++.+. . +.+.++.+.+.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~-~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTIN-RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccC-HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhC
Confidence 478889999998888888654 34444333322 345666677888887 333455432 1 445566665666
Q ss_pred CCeEEEeecC--------CccCC----CchHHHHHHHHHcCCeEEEc
Q 023076 246 IPVVSNQVQH--------SVVDM----RPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 246 ~~~~~~Q~~~--------n~~~~----~~~~~ll~~~~~~gi~via~ 280 (287)
.. .+++-. ..++. ....+.++.|+++||.+.+.
T Consensus 298 ~~--~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 298 LV--HISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred Cc--EEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 32 222211 11111 11226778899999876543
No 147
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=41.18 E-value=2.1e+02 Score=25.79 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=78.8
Q ss_pred cCCCccccCceeeccccCCCCCCCCCHHHHHHHHHHHH--HcCCCEEec----CCCCCCcHHHHHHHHhhhhccCCCceE
Q 023076 84 NGNDSLEICRVLNGMWQTSGGWGRIDRDDAVDAMLRYA--DAGLTTFDM----ADHYGPAEDLYGIFINRVRRERPPEFL 157 (287)
Q Consensus 84 lG~tg~~vs~lglGt~~~~~~~~~~~~~~a~~~l~~A~--~~Gin~fDT----A~~YG~sE~~lG~al~~~~r~r~~~~~ 157 (287)
.|-.|+-||.+- +.++++++++.+- =.|.|-|.. +..||.. .+.++....+ ..
T Consensus 89 ~GA~GIivP~V~-------------saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~----~~y~~~an~~----~~ 147 (267)
T PRK10128 89 IGAQTLLIPMVD-------------TAEQARQVVSATRYPPYGERGVGASVARAARWGRI----ENYMAQANDS----LC 147 (267)
T ss_pred CCCCeeEecCcC-------------CHHHHHHHHHhcCCCCCCCCCCCCccchhhccCCh----HHHHHHhccc----cE
Confidence 677777777532 4578888887765 346665542 2345531 2334332221 11
Q ss_pred EEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecC----------CCCCCcHHHHHH-HHHHHHHcCCcc
Q 023076 158 DKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW----------DYSNPGYLDALN-HLTDLKEEGKIK 226 (287)
Q Consensus 158 ~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p----------~~~~~~~~e~~~-aL~~l~~~G~Ir 226 (287)
.-+-|- +++. .+.+++.+ .++.+|.+++--- +...+.+.++++ ..+..++.||
T Consensus 148 vi~qiE----------t~~a-~~n~~~I~---~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk-- 211 (267)
T PRK10128 148 LLVQVE----------SKTA-LDNLDEIL---DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK-- 211 (267)
T ss_pred EEEEEC----------CHHH-HHhHHHHh---CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--
Confidence 111221 2222 23344444 4578888877531 122232333332 3344678888
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 023076 227 TVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (287)
Q Consensus 227 ~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~ 259 (287)
.+|+...+++...++++.|+.+.+......++.
T Consensus 212 ~~G~~~~~~~~a~~~~~~G~~~v~~g~D~~~l~ 244 (267)
T PRK10128 212 AAGFLAVDPDMAQKCLAWGANFVAVGVDTMLYT 244 (267)
T ss_pred eEEEcCCCHHHHHHHHHcCCcEEEEChHHHHHH
Confidence 578777789999999999988888888877763
No 148
>PLN02363 phosphoribosylanthranilate isomerase
Probab=41.13 E-value=87 Score=28.09 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~Q 252 (287)
+++.++.+. ++|.||+=+++... .+..- -.+..+.+-+......++.+||. |-+++.+.++.+. .+++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~-SpR~V-s~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~-~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPK-SKRSI-SLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADS-SDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCC-CCCcC-CHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 456665554 48999999874332 22111 12334444443333246789986 7788888888764 4689999
Q ss_pred ecCC
Q 023076 253 VQHS 256 (287)
Q Consensus 253 ~~~n 256 (287)
+.-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 149
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=41.06 E-value=2e+02 Score=24.98 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCC---c-HHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP---A-EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~---s-E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (287)
.++++...+.+.+.+.|..|+=|+.-|+. . |. -+.+++.-+++. .++.+.- -.+.+...+-++
T Consensus 129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~d--v~~m~~~v~~~v-----~IKaaGG------irt~~~a~~~i~ 195 (211)
T TIGR00126 129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVED--VRLMRNTVGDTI-----GVKASGG------VRTAEDAIAMIE 195 (211)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHH--HHHHHHHhccCC-----eEEEeCC------CCCHHHHHHHHH
Confidence 45577789999999999999999987752 1 21 122333222211 3443321 126788888888
Q ss_pred HHHHHcCCCc
Q 023076 184 VSRRRMDVPC 193 (287)
Q Consensus 184 ~SL~rLg~dy 193 (287)
.--.|+|+++
T Consensus 196 aGa~riGts~ 205 (211)
T TIGR00126 196 AGASRIGASA 205 (211)
T ss_pred HhhHHhCcch
Confidence 8889999875
No 150
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=41.05 E-value=1.7e+02 Score=29.65 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~Q 252 (287)
+.+.++.+. .+|.||+=+.+...-..... .+.....+.+....-.++.+||- |-+++.+.++.+. ..++++|
T Consensus 12 ~~eda~~a~-----~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-~~ld~vQ 84 (610)
T PRK13803 12 DSALISKAV-----DMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-NGIDFVQ 84 (610)
T ss_pred cHHHHHHHH-----HcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-cCCCEEE
Confidence 345555544 48999999875443211122 33313333333333357789996 7788888888764 4689999
Q ss_pred ecCCccCCCchHHHHHHHHHcCCeEE
Q 023076 253 VQHSVVDMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 253 ~~~n~~~~~~~~~ll~~~~~~gi~vi 278 (287)
+.-+.- ..+.+.++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 986531 111234444444445443
No 151
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.38 E-value=1.5e+02 Score=27.42 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCCc--HHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGPA--EDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRR 188 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~s--E~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~r 188 (287)
++..+.+..+.+.|++.|=.-- +.. .+.+ +++++.-.+ . ++.+-. ...++.+... + +++
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d~~~l-~~vr~~~g~-~-----~l~lDa-----N~~~~~~~a~--~---~~~ 199 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWDVEPL-KAVRERFPD-I-----PLMADA-----NSAYTLADIP--L---LKR 199 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHHHHHH-HHHHHHCCC-C-----eEEEEC-----CCCCCHHHHH--H---HHH
Confidence 5667788888899999874321 211 1222 233321111 1 122211 1234555542 1 344
Q ss_pred cCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-chHHH
Q 023076 189 MDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKM 266 (287)
Q Consensus 189 Lg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~~~~l 266 (287)
| +..++.++..|-+. +-++.+.+++++-.+ -+.|=|.++.+.+..+++.+ .++++|+..+.+-.- .-.++
T Consensus 200 l--~~~~i~~iEeP~~~-----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~-~~d~~~ik~~~~GGit~~~~i 271 (354)
T cd03317 200 L--DEYGLLMIEQPLAA-----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELG-ACKIINIKPGRVGGLTEALKI 271 (354)
T ss_pred h--hcCCccEEECCCCh-----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcC-CCCEEEecccccCCHHHHHHH
Confidence 4 23467777766432 235566777665432 36677788999999998876 477888887654221 22388
Q ss_pred HHHHHHcCCeEEEccc
Q 023076 267 AELCQLTGVKLITSLP 282 (287)
Q Consensus 267 l~~~~~~gi~via~sp 282 (287)
...|+.+|+.++..+.
T Consensus 272 ~~~A~~~gi~~~~g~~ 287 (354)
T cd03317 272 HDLCQEHGIPVWCGGM 287 (354)
T ss_pred HHHHHHcCCcEEecCc
Confidence 9999999999876443
No 152
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.34 E-value=3.2e+02 Score=25.64 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHcC-CCccceEEeecCCCC----------CCcHHHHHHHHHH-HHHcC---CccEEEec--CCCHHHHHH
Q 023076 178 VRESIDVSRRRMD-VPCLDMLQFHWWDYS----------NPGYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRI 240 (287)
Q Consensus 178 i~~~le~SL~rLg-~dyiDl~~lH~p~~~----------~~~~~e~~~aL~~-l~~~G---~Ir~iGvS--n~~~~~l~~ 240 (287)
+++-.+.-+++|+ .+....+.||.++++ ...+++.++++.+ +.+.| .|+++=+. |-+.+.+++
T Consensus 196 i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 196 IPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Confidence 4443343344443 334567889987642 1126777777765 45556 35565555 456677777
Q ss_pred HHH--cCCCeEEEeecCCccCC----CchH----HHHHHHHHcCCeEEEcccCC
Q 023076 241 ILE--NGIPVVSNQVQHSVVDM----RPQQ----KMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 241 ~~~--~~~~~~~~Q~~~n~~~~----~~~~----~ll~~~~~~gi~via~spl~ 284 (287)
+.+ .++++.++-++||++.. .+.. .+.+..+++|+.+....+.|
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G 329 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRG 329 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 665 35667888899998732 1222 45667788899988766654
No 153
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=40.13 E-value=2.1e+02 Score=23.40 Aligned_cols=64 Identities=6% Similarity=-0.070 Sum_probs=44.5
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.++-|++.. ...+..+++.+.+..+.+. ....|++++-.+.....++.++.+.|..|.+.
T Consensus 49 RlG~sVSKKvg~~--AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDTR--AVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccCc--chhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3455566665432 4578888888888887552 33459999988876666688888888887766
No 154
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=40.04 E-value=1.7e+02 Score=28.35 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=46.3
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHc-------CCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 217 TDLKEEGKIKTVALTNFDTERLRIILEN-------GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-------~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
..+-+.|-+..+|..+.+++++++.++. +-|+-+|-+ .++-+...+.+.++.+.++||.++..+
T Consensus 32 aAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 32 VAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEec
Confidence 4567889999999999999998877641 336776664 344333335688999999999877655
No 155
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=39.79 E-value=92 Score=25.88 Aligned_cols=63 Identities=24% Similarity=0.257 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHcCCCcc----ceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q 023076 178 VRESIDVSRRRMDVPCL----DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (287)
Q Consensus 178 i~~~le~SL~rLg~dyi----Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~ 243 (287)
.+..++..++++|.+.- +.+.-.+.. ... +.++.+.|+.|++.| ++-.-+||.+...++..++
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLR-LPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHH
Confidence 34566677777776521 111111111 111 345677788999988 4556678888877777665
No 156
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.76 E-value=2.7e+02 Score=26.11 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=55.7
Q ss_pred EEeecCCCC----------CCcHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 023076 197 LQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (287)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~-G~---Ir~iGvS--n~~~~~l~~~~~--~~~~~~~~Q~~~n~~ 258 (287)
+.||.|+.+ ...++++++++.++.++ |+ ++++=+- |-+.++++++.+ .+.+..++-++||+-
T Consensus 216 iSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~~ 295 (342)
T PRK14465 216 ISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNTE 295 (342)
T ss_pred EEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCCC
Confidence 678987642 12268889988877644 32 2244454 445666666554 245577888889874
Q ss_pred CC---Cc-hH---HHHHHHHHcCCeEEEcccCCC
Q 023076 259 DM---RP-QQ---KMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 259 ~~---~~-~~---~ll~~~~~~gi~via~spl~~ 285 (287)
.. .+ ++ ...+..+++||.+....+.|.
T Consensus 296 ~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 296 FFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 21 11 11 566778889999988776553
No 157
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=39.76 E-value=3.6e+02 Score=26.12 Aligned_cols=107 Identities=18% Similarity=0.240 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-ecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEe-------ccccCCCCCCCCHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRG-------LTKWVPPPVKMTSSIVR 179 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i-------~tK~~~~~~~~~~~~i~ 179 (287)
.+.+.-.+-++.|++.|-..+ |-+ ..|+-.++--+.|+..+.+ +-.|-| ..|.. ...+.+++.+.
T Consensus 74 ~d~~~E~~K~~~A~~~GADtiMDLS-tggdl~~iR~~il~~s~vp-----vGTVPiYqa~~~~~~k~~-~~~~mt~d~~~ 146 (431)
T PRK13352 74 SDIEEELEKAKVAVKYGADTIMDLS-TGGDLDEIRRAIIEASPVP-----VGTVPIYQAAVEAARKYG-SVVDMTEDDLF 146 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEeecc-CCCCHHHHHHHHHHcCCCC-----CcChhHHHHHHHHHhcCC-ChhhCCHHHHH
Confidence 455666677899999997654 554 3355444323333332211 011111 01111 23367888888
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCH
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 235 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~ 235 (287)
+.+++..+ |-+|.+-+|.- + ..+.++.+++.|++ .|+-+-.-
T Consensus 147 ~~ie~qa~----~GVDfmTiHcG------i--~~~~~~~~~~~~R~--~giVSRGG 188 (431)
T PRK13352 147 DVIEKQAK----DGVDFMTIHCG------V--TRETLERLKKSGRI--MGIVSRGG 188 (431)
T ss_pred HHHHHHHH----hCCCEEEEccc------h--hHHHHHHHHhcCCc--cCeecCCH
Confidence 88887665 45788999963 1 45667888888854 55554433
No 158
>PRK12928 lipoyl synthase; Provisional
Probab=39.65 E-value=3e+02 Score=25.10 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHcC---CccE---EEecCCCHHHHHHHHHc--CCCeEEEee-cCCc-------cCC--Cch--HHHHH
Q 023076 209 YLDALNHLTDLKEEG---KIKT---VALTNFDTERLRIILEN--GIPVVSNQV-QHSV-------VDM--RPQ--QKMAE 268 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G---~Ir~---iGvSn~~~~~l~~~~~~--~~~~~~~Q~-~~n~-------~~~--~~~--~~ll~ 268 (287)
.++.++.++.+++.| .++. +|+ .=+.+++.+.++. ..+++.+.+ +|.. +.+ .++ ..+-.
T Consensus 187 ~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~ 265 (290)
T PRK12928 187 YQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQ 265 (290)
T ss_pred HHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHHHH
Confidence 778899999999998 4443 566 4566666655442 234444443 3422 221 122 26778
Q ss_pred HHHHcCCeEEEcccCCCC
Q 023076 269 LCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 269 ~~~~~gi~via~spl~~G 286 (287)
.+.+.|...++.+||-+-
T Consensus 266 ~~~~~g~~~~~~~p~~rs 283 (290)
T PRK12928 266 IARELGFSHVRSGPLVRS 283 (290)
T ss_pred HHHHcCCceeEecCcccc
Confidence 889999999999999763
No 159
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.86 E-value=1.2e+02 Score=27.50 Aligned_cols=66 Identities=8% Similarity=0.052 Sum_probs=47.1
Q ss_pred HHHHHHcCCccEEE--ecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 216 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 216 L~~l~~~G~Ir~iG--vSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
|.+..++|+. .+| +..-++...+.+...|+++.++-.|+++++...-..++..++..|+..+..-|
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECC
Confidence 3444455765 344 33345556666666789999999999999876666889999999998877655
No 160
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=38.47 E-value=1.8e+02 Score=23.18 Aligned_cols=64 Identities=11% Similarity=-0.054 Sum_probs=43.1
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.++-|.... ...+..+++.+.++.+... ..-.|++++-.+.....++.+..+.|..|.+.
T Consensus 47 RiG~~VsKK~~g~--AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVKL--AVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCcc--HhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3455566663322 4577888888888876543 34689999998876666677777777776544
No 161
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=38.35 E-value=1.7e+02 Score=24.70 Aligned_cols=99 Identities=21% Similarity=0.234 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHcCCCccceEEeecCCC-CCCcHHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeEEEee
Q 023076 177 IVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 253 (287)
Q Consensus 177 ~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~--~~l~~~~~~~~~~~~~Q~ 253 (287)
.....+.+.+++.+... +-+.+--.+. .........+.+..|++.|- .+.+.+|.. ..+..+.. .+|+.+-+
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~~--l~~d~iKl 174 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLKR--LPVDLLKI 174 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHHh--CCCCeEEE
Confidence 44566677777776653 2233322221 11223445588999999996 567777643 33444433 35666666
Q ss_pred cCCccCC--------CchHHHHHHHHHcCCeEEEc
Q 023076 254 QHSVVDM--------RPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 254 ~~n~~~~--------~~~~~ll~~~~~~gi~via~ 280 (287)
..+++.. ..-+.++..|+..|+.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 6544321 11236788999999998874
No 162
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=37.75 E-value=1.9e+02 Score=22.71 Aligned_cols=63 Identities=2% Similarity=-0.238 Sum_probs=44.6
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCC---ccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~d---yiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.++-|.+. ...+..+++-+.++.+.+..+ -.|++++-.+.....++.+..+.|+.+.+.
T Consensus 49 R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 49 RFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred EEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 445666666543 456788888888888777643 479999988876665677877777776554
No 163
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=37.31 E-value=34 Score=24.05 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=10.1
Q ss_pred hhh--hhhhhHHHHHH
Q 023076 17 SLS--TFLPLLSIVQT 30 (287)
Q Consensus 17 ~~~--~~~~~~~~~~~ 30 (287)
++| .||+.|++.+.
T Consensus 8 ~~sRR~Flk~lg~~aa 23 (66)
T TIGR02811 8 DPSRRDLLKGLGVGAA 23 (66)
T ss_pred CccHHHHHHHHHHHHH
Confidence 445 89999888554
No 164
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.22 E-value=3.1e+02 Score=24.58 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCC--cHHH--HHHHHhh-hhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDL--YGIFINR-VRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~--lG~al~~-~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (287)
+...+.++.--+.|..+|..++.=|. .+.. +.+.|++ .+.+ .-..++.. +.++..+...+...
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~------~i~Hlt~r------~~n~~~l~~~L~~~ 82 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIP------TVPHLTCI------GATREEIREILREY 82 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCC------eeEEeeec------CCCHHHHHHHHHHH
Confidence 44455555555888999998876553 1222 2334432 1211 11222222 34667777777643
Q ss_pred HHHcCCCccceEEeec-CC-----CCCCcHHHHHHHHHHHHHcCCccEEEecCCCH---------HHHHHHH---HcCCC
Q 023076 186 RRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT---------ERLRIIL---ENGIP 247 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~-p~-----~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~---------~~l~~~~---~~~~~ 247 (287)
..+|++ +++.+-. +. .....+..+.+-++.+++..---.||+..|.. .+++.+. +.|..
T Consensus 83 -~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~ 159 (272)
T TIGR00676 83 -RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGAD 159 (272)
T ss_pred -HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 777754 3343432 21 11112334555555555542235788876432 2344343 35777
Q ss_pred eEEEeecCCccCCCchHHHHHHHHHcCCe
Q 023076 248 VVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (287)
Q Consensus 248 ~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~ 276 (287)
+.+-|.-|++ ..-.++++.|++.||.
T Consensus 160 f~iTQ~~fd~---~~~~~~~~~~~~~gi~ 185 (272)
T TIGR00676 160 YAITQLFFDN---DDYYRFVDRCRAAGID 185 (272)
T ss_pred eEeeccccCH---HHHHHHHHHHHHcCCC
Confidence 8888888886 3344888999999754
No 165
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=36.93 E-value=3.7e+02 Score=25.45 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCHHHHHHHHHHHHHcCCC-EEecCCCCCCcHHHHHHHHhhhhc---cCCCceEEEEEeccccCCC--CCCCCHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLT-TFDMADHYGPAEDLYGIFINRVRR---ERPPEFLDKVRGLTKWVPP--PVKMTSSIVRES 181 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin-~fDTA~~YG~sE~~lG~al~~~~r---~r~~~~~~~v~i~tK~~~~--~~~~~~~~i~~~ 181 (287)
.+.+....+.+.+...|++ +++|.-. ...+. +-++++.... +.......-+.+-.-+... .....++.+++-
T Consensus 74 ~~~e~~~~~~~~~~~~GvTt~l~t~~t-~~~~~-~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~~~Gah~~~~i~~p 151 (380)
T TIGR00221 74 ASFETLEIMSERLPKSGCTSFLPTLIT-QPDEN-IKQAVKNMREYLAKEKNAQALGLHLEGPFLSPEKKGAHPPEYIREP 151 (380)
T ss_pred CCHHHHHHHHHHHHhcCeeEEeeeccC-CCHHH-HHHHHHHHHHHHhccCCceeeeEeeecCcCChhhcCCCCHHHhhCc
Confidence 3557777888888899998 5577532 22233 3455554321 1110011122221111110 113344555432
Q ss_pred HHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCC
Q 023076 182 IDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 247 (287)
Q Consensus 182 le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~ 247 (287)
=.+-+++|--.+-+.+-+=-.-|+.+ ...+.++.|+++|.+-++|=||-+.+++.++.+.|..
T Consensus 152 ~~~~~~~~~~~~~~~i~~vTlAPE~~---~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~~~Ga~ 214 (380)
T TIGR00221 152 DVELFKKFLCEAGGVITKVTLAPEED---QHFELIRHLKDAGIIVSAGHTNATYELAKAAFKAGAT 214 (380)
T ss_pred CHHHHHHHHHhcCCCEEEEEECCCCC---ChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHHHcCCC
Confidence 22222222111112222222223333 3456668999999999999999999999999987754
No 166
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=36.59 E-value=1.3e+02 Score=28.60 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=49.0
Q ss_pred HcCCCEEec-----CCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCC--------CCCCCCH----HHHHHHHHH
Q 023076 122 DAGLTTFDM-----ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVP--------PPVKMTS----SIVRESIDV 184 (287)
Q Consensus 122 ~~Gin~fDT-----A~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~--------~~~~~~~----~~i~~~le~ 184 (287)
+.+..-||. +.-+...+..|.+.+++.+++ -.|+.||... .+..++. +.|++.+.+
T Consensus 109 ~~~~~~yD~fiii~s~rf~~ndv~La~~i~~~gK~-------fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTENDVQLAKEIQRMGKK-------FYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp HTTGGG-SEEEEEESSS--HHHHHHHHHHHHTT-E-------EEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred HccccccCEEEEEeCCCCchhhHHHHHHHHHcCCc-------EEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 445554442 333344566678888875544 4567777531 2334454 456777888
Q ss_pred HHHHcCCCccceEEeecCCCCCCcHHHHHHHHH
Q 023076 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLT 217 (287)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~ 217 (287)
.|++-|+....+|++-+.++...++....++|+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHH
Confidence 888889999999999988877666655554444
No 167
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=36.31 E-value=2.8e+02 Score=24.97 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCC--CCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~--~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
++.+. +..+-+.|.++|+++|++=.+-.|. |...+.+++.+.+.. ...++..++. -+...++.+++.+.+...
T Consensus 17 ~s~e~-K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g~~~i~ 91 (274)
T cd07938 17 IPTED-KIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAGVDEVA 91 (274)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcCcCEEE
Confidence 34444 4445556899999999996332222 222234555555443 2346677775 477889999987754433
Q ss_pred EeecCCcc------CCCc------hHHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVV------DMRP------QQKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~------~~~~------~~~ll~~~~~~gi~vi 278 (287)
+-+..|-. .... -.+.+++++++|+.+.
T Consensus 92 i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 92 VFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred EEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 33333321 1111 1256889999999875
No 168
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=35.90 E-value=2.1e+02 Score=22.33 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=44.7
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCC----C--ccceEEeecCCCCCCcHHHHHHHHHHHH
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV----P--CLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~----d--yiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (287)
+.-+.++.|.... ...+..+++.+.++.+.+.. . ..|++++-.+.....++.+..+.|+.+.
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 4466677775433 45788999999999988754 2 5789999988776666777777776654
No 169
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=35.89 E-value=3.4e+02 Score=24.73 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=55.6
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-chHHHHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQ 271 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I-r~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~~~~ll~~~~ 271 (287)
.++.++..|-+. . +.+.++.++-.+ -+.|=|-++.+++.++++.+ .++++|+.....-.- .-.++.+.|+
T Consensus 183 ~~i~~iEqP~~~---~----~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~ik~~~~GGi~~~~~i~~~a~ 254 (307)
T TIGR01927 183 GRIAFLEEPLPD---A----DEMSAFSEATGTAIALDESLWELPQLADEYGPG-WRGALVIKPAIIGSPAKLRDLAQKAH 254 (307)
T ss_pred CCceEEeCCCCC---H----HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcC-CCceEEECchhcCCHHHHHHHHHHHH
Confidence 577888877532 1 455666665433 35666778899999998765 367778877653211 2238899999
Q ss_pred HcCCeEEEcccC
Q 023076 272 LTGVKLITSLPF 283 (287)
Q Consensus 272 ~~gi~via~spl 283 (287)
.+|+.++..+.+
T Consensus 255 ~~gi~~~~~~~~ 266 (307)
T TIGR01927 255 RLGLQAVFSSVF 266 (307)
T ss_pred HcCCCEEEECcc
Confidence 999999875544
No 170
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.82 E-value=4e+02 Score=25.56 Aligned_cols=150 Identities=7% Similarity=-0.026 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcH--HHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
+.++..+..+.+++.|++.|=.--.-...+ +.+ +++++.-.+.. .+.+-. ...++++...+.++
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v-~avRe~vG~~~-----~L~vDa-----N~~w~~~~A~~~~~--- 261 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRC-RLAREVIGPDN-----KLMIDA-----NQRWDVPEAIEWVK--- 261 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH-HHHHHhcCCCC-----eEEEEC-----CCCCCHHHHHHHHH---
Confidence 446666777778889999875421101111 111 23333211211 122211 12456665444333
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC----CccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----KIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR- 261 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G----~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~- 261 (287)
+| +-.++.++..|-+.. -++.+.+|++.. .=-+.|=|.++...++++++.+ .++++|....-.-.-
T Consensus 262 -~L--~~~~l~~iEEP~~~~-----d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~-a~dil~~d~~~~GGit 332 (415)
T cd03324 262 -QL--AEFKPWWIEEPTSPD-----DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAG-AIDVVQIDSCRLGGVN 332 (415)
T ss_pred -Hh--hccCCCEEECCCCCC-----cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcC-CCCEEEeCccccCCHH
Confidence 34 234667778775432 344556666653 3335566678899999998866 488888887754221
Q ss_pred chHHHHHHHHHcCCeEEEcc
Q 023076 262 PQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 262 ~~~~ll~~~~~~gi~via~s 281 (287)
.-.++...|+++|+.+...+
T Consensus 333 ~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 333 ENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred HHHHHHHHHHHcCCeEEEcC
Confidence 22388999999999988763
No 171
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=35.68 E-value=97 Score=28.75 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=0.0
Q ss_pred EeecCCCCCCcHHHHHHHHHHHHHcCCccEE--------------------EecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 023076 198 QFHWWDYSNPGYLDALNHLTDLKEEGKIKTV--------------------ALTNFDTERLRIILENGIPVVSNQVQHSV 257 (287)
Q Consensus 198 ~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i--------------------GvSn~~~~~l~~~~~~~~~~~~~Q~~~n~ 257 (287)
.+.......+ +++-+..|+.+++.| +|++ |+|++..+.++++.+.|+.+|+-.+...-
T Consensus 97 ~~l~~ega~~-~~~dl~~L~~~~~~G-vR~lgltwn~~N~~g~g~~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt 174 (313)
T COG2355 97 AVLHMEGAEP-LGDDLDKLELFHALG-VRSLGLTWNRDNLFGDGCYERTGGGLTPFGKELVREMNELGIIIDLSHLSDKT 174 (313)
T ss_pred EEEeccCccc-ccccHHHHHHHHHhC-ceEEEeeeccCCcccCccCCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCcc
Q ss_pred cC------------------------CCchHHHHHHHHHcC--CeEEEcccC
Q 023076 258 VD------------------------MRPQQKMAELCQLTG--VKLITSLPF 283 (287)
Q Consensus 258 ~~------------------------~~~~~~ll~~~~~~g--i~via~spl 283 (287)
+. |.-.++.++...++| |++..+.+|
T Consensus 175 ~~Dvl~~s~~PviaSHSN~~al~~h~RNl~D~qlkaI~~~gGvIgv~~~~~f 226 (313)
T COG2355 175 FWDVLDLSKAPVVASHSNARALVDHPRNLSDEQLKAIAETGGVIGVNFIPAF 226 (313)
T ss_pred HHHHHhccCCceEEecCCchhccCCCCCCCHHHHHHHHhcCCEEEEEeehhh
No 172
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=35.36 E-value=86 Score=28.56 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=53.1
Q ss_pred HHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC------CCHHHHHHHHH-cCCCeEEEeecCCcc
Q 023076 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FDTERLRIILE-NGIPVVSNQVQHSVV 258 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn------~~~~~l~~~~~-~~~~~~~~Q~~~n~~ 258 (287)
+++...+..|+..+..|....-.+ + .-++..-+ +|=|+. |+..++.++.+ .+++..++-+.||+.
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~gCpV---i---~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTGCPV---I---ASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred HHHhhhhhcceeEEecCCCCCChH---H---HhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 334444447888888764322212 2 22333333 444443 33444444444 378999999999774
Q ss_pred CCCchHHHHHHHHHcCCeEEEcccCC
Q 023076 259 DMRPQQKMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 259 ~~~~~~~ll~~~~~~gi~via~spl~ 284 (287)
+ - ++.++|++.|+.+++--|+-
T Consensus 228 ~---s-~ie~~~~e~gi~il~~IPyd 249 (284)
T COG1149 228 D---S-EIEEYCEEEGIPILGEIPYD 249 (284)
T ss_pred c---h-HHHHHHHHcCCCeeEECCcc
Confidence 3 2 78999999999999887764
No 173
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=35.28 E-value=3.6e+02 Score=25.52 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+...+ +-+.|.++|+++|++- +|... ++-++.++.+.+.|+ .+.++.+-.....++.+.+.+++...
T Consensus 22 ~~s~e~k~~-ia~~L~~~GV~~IE~G---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 93 (378)
T PRK11858 22 VFTNEEKLA-IARMLDEIGVDQIEAG---FPAVS----EDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVH 93 (378)
T ss_pred CCCHHHHHH-HHHHHHHhCCCEEEEe---CCCcC----hHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEE
Confidence 455555444 4455889999998874 34322 123455566665554 34445544457788888887755433
Q ss_pred EeecCCccC------CCc------hHHHHHHHHHcCCeEEEc
Q 023076 251 NQVQHSVVD------MRP------QQKMAELCQLTGVKLITS 280 (287)
Q Consensus 251 ~Q~~~n~~~------~~~------~~~ll~~~~~~gi~via~ 280 (287)
+-+..|..+ ... -.+.+++++++|..+...
T Consensus 94 i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~ 135 (378)
T PRK11858 94 IFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS 135 (378)
T ss_pred EEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 333333321 111 125777899999876543
No 174
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=35.16 E-value=2e+02 Score=28.57 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc------C-CccEEEecCCCHHHHHHHHHc
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE------G-KIKTVALTNFDTERLRIILEN 244 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~------G-~Ir~iGvSn~~~~~l~~~~~~ 244 (287)
.++.+.-. .+-+.|.++|+|+|++-+ |..... ..+.++.+.+.... + ..+-.+++....+.++.+++.
T Consensus 102 ~fs~eeKi-~Ia~~L~~~GVd~IEvG~---Pa~s~~-e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 102 SLTPPQKL-EIARQLAKLRVDIMEVGF---PGSSEE-EFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEeC---CCCCHH-HHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Confidence 45555544 445569999999888844 432211 23334444332111 1 133456777777778887764
Q ss_pred ----CCCeEEEeecCCccC------CCch------HHHHHHHHHcCCeEEEccc
Q 023076 245 ----GIPVVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 245 ----~~~~~~~Q~~~n~~~------~~~~------~~ll~~~~~~gi~via~sp 282 (287)
+.+-..+-+.-|.++ ...+ .+.+++++++|...+.+++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~ 230 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC 230 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc
Confidence 222222222222211 1111 2678899999975455544
No 175
>COG0218 Predicted GTPase [General function prediction only]
Probab=34.68 E-value=3e+02 Score=23.78 Aligned_cols=114 Identities=11% Similarity=0.015 Sum_probs=70.4
Q ss_pred ceeeccccCCCCCCCCCHHHHHHHHHHHHHc------CCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEecccc
Q 023076 93 RVLNGMWQTSGGWGRIDRDDAVDAMLRYADA------GLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKW 166 (287)
Q Consensus 93 ~lglGt~~~~~~~~~~~~~~a~~~l~~A~~~------Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~ 166 (287)
.=|||-+.... .-.+...+++..+++. .+-.+|.-..--..+..+=+|+.....+ -+.+.||.
T Consensus 77 lPGYGyAkv~k----~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-------~~vv~tK~ 145 (200)
T COG0218 77 LPGYGYAKVPK----EVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-------VIVVLTKA 145 (200)
T ss_pred CCCcccccCCH----HHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-------eEEEEEcc
Confidence 34666544321 1235566777777643 4556786544333455567888876554 45667886
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccce--EEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDM--LQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl--~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
. ........+.+....++|+.+..|- +++... ....++++.++.+.+...+
T Consensus 146 D----Ki~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss-~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 146 D----KLKKSERNKQLNKVAEELKKPPPDDQWVVLFSS-LKKKGIDELKAKILEWLKE 198 (200)
T ss_pred c----cCChhHHHHHHHHHHHHhcCCCCccceEEEEec-ccccCHHHHHHHHHHHhhc
Confidence 4 3466777888899999998887776 333333 2233488888888776654
No 176
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.57 E-value=4e+02 Score=25.07 Aligned_cols=77 Identities=18% Similarity=0.061 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEe--cCCCHHHHHHHHH--cCCCeEEEeecCCccCC-----CchH---HHHHHHHH
Q 023076 209 YLDALNHLTDLKEE-GK---IKTVAL--TNFDTERLRIILE--NGIPVVSNQVQHSVVDM-----RPQQ---KMAELCQL 272 (287)
Q Consensus 209 ~~e~~~aL~~l~~~-G~---Ir~iGv--Sn~~~~~l~~~~~--~~~~~~~~Q~~~n~~~~-----~~~~---~ll~~~~~ 272 (287)
+++..+++.+..++ |+ +-++=+ -|-++++++++.+ .+.++.++-++||+... ..++ ++.+..++
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 77777777776543 42 123322 2667888877766 36778899999998642 2222 56677889
Q ss_pred cCCeEEEcccCCC
Q 023076 273 TGVKLITSLPFLV 285 (287)
Q Consensus 273 ~gi~via~spl~~ 285 (287)
+||.+....+.|.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999887766553
No 177
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=34.41 E-value=2.7e+02 Score=23.09 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK 224 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~ 224 (287)
+++.+.+ ..++++.- =+++++|..+......+..-..+..|+++|.
T Consensus 137 ~~~~i~~---~~~~~~~~--g~Iil~Hd~~~~~~t~~~l~~~i~~l~~~Gy 182 (191)
T TIGR02764 137 GVESIVD---RVVKNTKP--GDIILLHASDSAKQTVKALPTIIKKLKEKGY 182 (191)
T ss_pred CHHHHHH---HHHhcCCC--CCEEEEeCCCCcHhHHHHHHHHHHHHHHCCC
Confidence 4444443 34445542 3789999633211112233344566777774
No 178
>PRK06256 biotin synthase; Validated
Probab=34.34 E-value=3.7e+02 Score=24.63 Aligned_cols=118 Identities=14% Similarity=0.135 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEE-ecCCCCCCcH---HHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTF-DMADHYGPAE---DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~f-DTA~~YG~sE---~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (287)
.+.++..+.++.+.+.|++.| -.+..++... +.+-+.++..... . .+ .+.+. .+ ..+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~-~-~i--~~~~~--~g----~l~~e~l----- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEE-T-DL--EICAC--LG----LLTEEQA----- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhc-C-CC--cEEec--CC----cCCHHHH-----
Confidence 577899999999999998533 2222333221 1234555543322 1 11 11111 11 2333433
Q ss_pred HHHHHcCCCccceEEeec-------CCCCCCcHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHH
Q 023076 184 VSRRRMDVPCLDMLQFHW-------WDYSNPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILE 243 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~-------p~~~~~~~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~ 243 (287)
+-|++.|.+.+-+- +.. ..+.. .+++.+++++.+++.|.--. +|+ +.+.+++.+.+.
T Consensus 156 ~~LkeaG~~~v~~~-lEts~~~~~~i~~~~-t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~ 223 (336)
T PRK06256 156 ERLKEAGVDRYNHN-LETSRSYFPNVVTTH-TYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAF 223 (336)
T ss_pred HHHHHhCCCEEecC-CccCHHHHhhcCCCC-CHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHH
Confidence 34667776654331 111 11112 37889999999999996322 344 456666555543
No 179
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=34.32 E-value=1.1e+02 Score=28.26 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec--CCCHHHHHH
Q 023076 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT--NFDTERLRI 240 (287)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS--n~~~~~l~~ 240 (287)
++++.+..+...++||.+.+.+-+--..++...--..+-+.|++|.++| ++.|=|. +|-.+.++-
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lET 272 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLET 272 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhH
Confidence 4678888888889998776555333222221110112556678999999 5555443 233444443
No 180
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=34.15 E-value=2.2e+02 Score=22.03 Aligned_cols=64 Identities=13% Similarity=0.042 Sum_probs=43.5
Q ss_pred EEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHHHc
Q 023076 157 LDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 222 (287)
Q Consensus 157 ~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~ 222 (287)
+.-+.++-|.... ...+..+++.+.++.+.+. ....|++++-.+.....++.+..+.|..+.+.
T Consensus 46 R~G~~VsKK~~g~--AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 46 RLGLTVAKKNVKR--AHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EEEEEEEcccCcc--hhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4455566663322 4577888888888777553 24579999988877666688888888777653
No 181
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=33.81 E-value=1.1e+02 Score=28.73 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=51.8
Q ss_pred HHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCC-ccceEEe
Q 023076 121 ADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP-CLDMLQF 199 (287)
Q Consensus 121 ~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~d-yiDl~~l 199 (287)
-+.|+.|.|.. | ++ -..++=+......-+|..+++--.. ....+.+++.+-.++ -+.+|.+ .||+-+=
T Consensus 13 E~~G~~f~~~~---G--~~--~d~~~ilk~~G~N~vRlRvwv~P~~---~g~~~~~~~~~~akr-ak~~Gm~vlldfHYS 81 (332)
T PF07745_consen 13 EAAGVKFYDEN---G--QE--KDLFQILKDHGVNAVRLRVWVNPYD---GGYNDLEDVIALAKR-AKAAGMKVLLDFHYS 81 (332)
T ss_dssp HHTT---B-TT---S--SB----HHHHHHHTT--EEEEEE-SS-TT---TTTTSHHHHHHHHHH-HHHTT-EEEEEE-SS
T ss_pred HHcCCeEECCC---C--CC--CCHHHHHHhcCCCeEEEEeccCCcc---cccCCHHHHHHHHHH-HHHCCCeEEEeeccc
Confidence 36788877743 3 22 5666555444433345444433221 124566666655553 3456654 2332221
Q ss_pred e-cCCCCCCcHHHHHHH--HHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeec
Q 023076 200 H-WWDYSNPGYLDALNH--LTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (287)
Q Consensus 200 H-~p~~~~~~~~e~~~a--L~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~ 254 (287)
+ |-||........|+. +++|+++ |.+|+.+.+.++.+.|+.|+.+|+-
T Consensus 82 D~WaDPg~Q~~P~aW~~~~~~~l~~~-------v~~yT~~vl~~l~~~G~~pd~VQVG 132 (332)
T PF07745_consen 82 DFWADPGKQNKPAAWANLSFDQLAKA-------VYDYTKDVLQALKAAGVTPDMVQVG 132 (332)
T ss_dssp SS--BTTB-B--TTCTSSSHHHHHHH-------HHHHHHHHHHHHHHTT--ESEEEES
T ss_pred CCCCCCCCCCCCccCCCCCHHHHHHH-------HHHHHHHHHHHHHHCCCCccEEEeC
Confidence 1 223332222334433 2444444 6778888888888888889999875
No 182
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.77 E-value=3.3e+02 Score=25.80 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=51.0
Q ss_pred cHHHHHHHHHH-HHHcC---CccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCccCCC----c----hHHHHHHHH
Q 023076 208 GYLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVDMR----P----QQKMAELCQ 271 (287)
Q Consensus 208 ~~~e~~~aL~~-l~~~G---~Ir~iGvS--n~~~~~l~~~~~--~~~~~~~~Q~~~n~~~~~----~----~~~ll~~~~ 271 (287)
.++++++++.+ +.+.| +|+++=+. |.+.+.++++.+ .+.++.++-++||++... + -..+.+..+
T Consensus 260 ~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~ 339 (368)
T PRK14456 260 PLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLL 339 (368)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHH
Confidence 37888888875 45555 34455454 445556666655 245678888899987531 1 226777888
Q ss_pred HcCCeEEEcccCC
Q 023076 272 LTGVKLITSLPFL 284 (287)
Q Consensus 272 ~~gi~via~spl~ 284 (287)
++|+.+....+.|
T Consensus 340 ~~Gi~vtvR~~~G 352 (368)
T PRK14456 340 DAGLQVTVRKSYG 352 (368)
T ss_pred HCCCcEEeeCCCC
Confidence 9999998877655
No 183
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=33.28 E-value=3.6e+02 Score=24.15 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHc--CCccEEEecCCC
Q 023076 209 YLDALNHLTDLKEE--GKIKTVALTNFD 234 (287)
Q Consensus 209 ~~e~~~aL~~l~~~--G~Ir~iGvSn~~ 234 (287)
..++++.++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 45678899999988 888899999854
No 184
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=33.04 E-value=2.7e+02 Score=25.31 Aligned_cols=69 Identities=19% Similarity=0.406 Sum_probs=40.9
Q ss_pred HHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCch
Q 023076 184 VSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 263 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~ 263 (287)
.-|..+|++.- ++..|..+ -.+....|.++.++|+ .|++-+ +.|.|.. .+|.
T Consensus 44 ~LL~~~~I~~~-~is~h~hn-----e~~~~~~li~~l~~g~--~valVS----------DAG~P~I----------SDPG 95 (275)
T COG0313 44 KLLSHLGIKTP-LISYHEHN-----EKEKLPKLIPLLKKGK--SVALVS----------DAGTPLI----------SDPG 95 (275)
T ss_pred HHHHHhCCCCc-eecccCCc-----HHHHHHHHHHHHhcCC--eEEEEe----------cCCCCcc----------cCcc
Confidence 34556666543 55555432 3345566667777774 344322 2454322 3577
Q ss_pred HHHHHHHHHcCCeEEEc
Q 023076 264 QKMAELCQLTGVKLITS 280 (287)
Q Consensus 264 ~~ll~~~~~~gi~via~ 280 (287)
..++..|+++||.|++-
T Consensus 96 ~~LV~~a~~~gi~V~~l 112 (275)
T COG0313 96 YELVRAAREAGIRVVPL 112 (275)
T ss_pred HHHHHHHHHcCCcEEec
Confidence 78999999999988753
No 185
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=32.65 E-value=2.4e+02 Score=26.31 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=21.7
Q ss_pred CHHHHHHHHHcCCCeEEEeecCCccCC-CchHHHHHHHHHcCCeEE
Q 023076 234 DTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 234 ~~~~l~~~~~~~~~~~~~Q~~~n~~~~-~~~~~ll~~~~~~gi~vi 278 (287)
+.+.+++++....+..++..+.||.-. ..-+++.+.|+++|+.++
T Consensus 125 d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lI 170 (366)
T PRK08247 125 SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLI 170 (366)
T ss_pred CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEE
Confidence 445555544333334444445555311 122356666666666655
No 186
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.63 E-value=1.4e+02 Score=25.41 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=35.5
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCC-ccCCCchHHHHHHHHHcCCeEEEcccCCC
Q 023076 217 TDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n-~~~~~~~~~ll~~~~~~gi~via~spl~~ 285 (287)
.+|.+.|- ..+-+.-.+.+.+.++++ |....+.-+... .-.......+++.|++.||..+.+|.++.
T Consensus 38 ~~l~~~g~-~vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 38 QQLQALGA-EVVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHTTT-EEEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred hhhhcccc-eEeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 45556665 345444446667777765 433333333322 11112334788888888887777777654
No 187
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=32.48 E-value=4.3e+02 Score=24.85 Aligned_cols=133 Identities=11% Similarity=0.001 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCC--------CcHHHHHHHHhhhhccCCC----------------ceEEEEEec
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYG--------PAEDLYGIFINRVRRERPP----------------EFLDKVRGL 163 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG--------~sE~~lG~al~~~~r~r~~----------------~~~~~v~i~ 163 (287)
.+.++..++++.-.+.|++.|+....-. +.++++ +.++....-+.. ...+.+++.
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~-~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s 143 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVM-AAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFAS 143 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHH-HHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEe
Confidence 4558888999999999999999874322 234433 333331111000 000111111
Q ss_pred cccCC--CCCCCCHHHHHHHHHHHHHHc---CCCccceEE---eecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC---
Q 023076 164 TKWVP--PPVKMTSSIVRESIDVSRRRM---DVPCLDMLQ---FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--- 232 (287)
Q Consensus 164 tK~~~--~~~~~~~~~i~~~le~SL~rL---g~dyiDl~~---lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn--- 232 (287)
+--.. ...+.+++.+.+.+.+..+.. |. ++..++ +-.|+....+.+..++..+++.+.| +..|.++.
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~G-ad~I~l~DT~G 221 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMG-CYEISLGDTIG 221 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcC-CCEEEecCCcC
Confidence 10000 001345555555444444433 42 344333 2344444334667777778888888 55676664
Q ss_pred -CCHHHHHHHHH
Q 023076 233 -FDTERLRIILE 243 (287)
Q Consensus 233 -~~~~~l~~~~~ 243 (287)
.+|.++.++++
T Consensus 222 ~a~P~~v~~lv~ 233 (347)
T PLN02746 222 VGTPGTVVPMLE 233 (347)
T ss_pred CcCHHHHHHHHH
Confidence 35676666554
No 188
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=32.46 E-value=2.2e+02 Score=27.10 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCC-cH--HHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGP-AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~-sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (287)
+.++..+.+..+++.|++.|=.--.... .+ +.+ +++++.-.+.. ++.+-. ...++.+...+ .
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v-~avRe~~G~~~-----~l~vDa-----N~~w~~~~A~~----~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRI-EAALDVLGDGA-----RLAVDA-----NGRFDLETAIA----Y 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHH-HHHHHhcCCCC-----eEEEEC-----CCCCCHHHHHH----H
Confidence 4466667777788999998754211001 11 111 23332111111 122211 11345554333 2
Q ss_pred HHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCC---CeEEEeecCCccCCC
Q 023076 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGI---PVVSNQVQHSVVDMR 261 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~---~~~~~Q~~~n~~~~~ 261 (287)
++.| +.+++.++..|-+.. -++.+.+|++...+- +.|=|.++...+.++++.+. -++++|+...-.-.-
T Consensus 225 ~~~l--~~~~~~~iEeP~~~~-----d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGi 297 (385)
T cd03326 225 AKAL--APYGLRWYEEPGDPL-----DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHh--hCcCCCEEECCCCcc-----CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCH
Confidence 3334 235777888775432 355567787776554 66777889999999988652 148888887653221
Q ss_pred c-hHHHHHHHHHcCCe
Q 023076 262 P-QQKMAELCQLTGVK 276 (287)
Q Consensus 262 ~-~~~ll~~~~~~gi~ 276 (287)
. -..+.+.|+.+|+.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 2 23889999999997
No 189
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.02 E-value=2.9e+02 Score=26.01 Aligned_cols=88 Identities=14% Similarity=0.116 Sum_probs=57.0
Q ss_pred EEeecCCCCC----------CcHHHHHHHHHHHHHcC----CccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 023076 197 LQFHWWDYSN----------PGYLDALNHLTDLKEEG----KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (287)
Q Consensus 197 ~~lH~p~~~~----------~~~~e~~~aL~~l~~~G----~Ir~iGvS--n~~~~~l~~~~~--~~~~~~~~Q~~~n~~ 258 (287)
+-||.++++. ..+++++++++++.+++ +|+++=+. |-+.++++++.+ .+.+..++-++||++
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~ 302 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPV 302 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcC
Confidence 5678765421 12688999999887754 23344343 555677777665 245677888899987
Q ss_pred CC-----CchH---HHHHHHHHcCCeEEEcccCC
Q 023076 259 DM-----RPQQ---KMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 259 ~~-----~~~~---~ll~~~~~~gi~via~spl~ 284 (287)
.. ..++ .+.+.++++|+.+....+.|
T Consensus 303 ~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g 336 (356)
T PRK14455 303 PERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHG 336 (356)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 52 1222 56667899999988766544
No 190
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=32.00 E-value=2.7e+02 Score=27.06 Aligned_cols=84 Identities=8% Similarity=0.028 Sum_probs=54.1
Q ss_pred eEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcC
Q 023076 196 MLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTG 274 (287)
Q Consensus 196 l~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~g 274 (287)
+.++..|-+..+ ..+-++.+.++++...|- ..|=+.++.++++++++.+ -++++|......--..-..+.+.|+.+|
T Consensus 252 ~~~iEePv~~~d-~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~-avdi~~~d~~~gGIt~~~kIa~lA~a~G 329 (441)
T TIGR03247 252 LAYAEDPCGAEQ-GYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQ-AVDIPLADPHFWTMQGSVRVAQMCHDWG 329 (441)
T ss_pred hceEeCCCCccc-ccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhC-CCCEEeccCCcchHHHHHHHHHHHHHcC
Confidence 456676654321 112366778887765554 4566778899999998865 3666777653210011238899999999
Q ss_pred CeEEEcc
Q 023076 275 VKLITSL 281 (287)
Q Consensus 275 i~via~s 281 (287)
+.+..++
T Consensus 330 i~v~~h~ 336 (441)
T TIGR03247 330 LTWGSHS 336 (441)
T ss_pred CEEEEeC
Confidence 9988765
No 191
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.00 E-value=4.4e+02 Score=24.85 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=55.6
Q ss_pred EeecCCCC----------CCcHHHHHHHHHHHH-HcC---CccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCccC
Q 023076 198 QFHWWDYS----------NPGYLDALNHLTDLK-EEG---KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVVD 259 (287)
Q Consensus 198 ~lH~p~~~----------~~~~~e~~~aL~~l~-~~G---~Ir~iGvS--n~~~~~l~~~~~--~~~~~~~~Q~~~n~~~ 259 (287)
.||.++++ ...++++++++.+.. +.| .|+++=+. |-+.++++++.+ .+.+..++-++||+..
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48887642 112567888777554 444 35565555 446777777665 2567889999999864
Q ss_pred C----CchH----HHHHHHHHcCCeEEEcccCC
Q 023076 260 M----RPQQ----KMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 260 ~----~~~~----~ll~~~~~~gi~via~spl~ 284 (287)
. .+.. .+.+..+++|+.+....+.|
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G 337 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKG 337 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 2 1222 45566778899988776655
No 192
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=31.90 E-value=2.7e+02 Score=23.67 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCC----cH--HHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGP----AE--DLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRES 181 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~----sE--~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~ 181 (287)
.++++...+.+.|.++|..|+=|+.-|.. -| +.+.+.++ .+ + .++++.- + .+.+.+.+-
T Consensus 128 l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~---v--~ik~aGG--i----kt~~~~l~~ 192 (203)
T cd00959 128 LTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR---V--GVKAAGG--I----RTLEDALAM 192 (203)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC---c--eEEEeCC--C----CCHHHHHHH
Confidence 35678888999999999999999977741 12 33344433 21 1 3343321 1 156777777
Q ss_pred HHHHHHHcCC
Q 023076 182 IDVSRRRMDV 191 (287)
Q Consensus 182 le~SL~rLg~ 191 (287)
++.-..|+|+
T Consensus 193 ~~~g~~riG~ 202 (203)
T cd00959 193 IEAGATRIGT 202 (203)
T ss_pred HHhChhhccC
Confidence 7776777776
No 193
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=31.74 E-value=52 Score=26.34 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=20.5
Q ss_pred CCchHHHHHHHHHcCCeEEEcccCC
Q 023076 260 MRPQQKMAELCQLTGVKLITSLPFL 284 (287)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~spl~ 284 (287)
+..-.++++.|++.||.+++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4455699999999999999987654
No 194
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=31.36 E-value=4.4e+02 Score=24.60 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCeEE
Q 023076 264 QKMAELCQLTGVKLI 278 (287)
Q Consensus 264 ~~ll~~~~~~gi~vi 278 (287)
.++++++++++|.+-
T Consensus 236 p~ll~~l~~~~I~lE 250 (345)
T cd01321 236 PLLMDLVKKKNIAIE 250 (345)
T ss_pred HHHHHHHHHcCCeEE
Confidence 489999999999875
No 195
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=31.26 E-value=4.4e+02 Score=24.84 Aligned_cols=49 Identities=16% Similarity=0.140 Sum_probs=26.3
Q ss_pred cCCCHHHHHHHHHcCCCeEEEeecCCccC-CCchHHHHHHHHHcCCeEEE
Q 023076 231 TNFDTERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 231 Sn~~~~~l~~~~~~~~~~~~~Q~~~n~~~-~~~~~~ll~~~~~~gi~via 279 (287)
...+.+.+++++....+..++..+.||.- ....+++.+.|+++|+.++.
T Consensus 123 d~~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~viv 172 (386)
T PRK08045 123 DQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVV 172 (386)
T ss_pred CCCCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEE
Confidence 33456666665543334555555555521 12234677777777776653
No 196
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=31.13 E-value=4.5e+02 Score=24.71 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccC
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 259 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~ 259 (287)
.++...+..| ++.=|-+++..|. +..++..+..+.+.--++..-+...+.+.+++++....+..++..+.|+.-
T Consensus 87 ~Ai~~~l~al-l~~Gd~Vl~~~~~-----y~~t~~~~~~~~~~~gi~~~~~d~~d~e~l~~~i~~~tklV~ie~p~NPtg 160 (388)
T PRK07811 87 AATDCLLRAV-LRPGDHIVIPNDA-----YGGTFRLIDKVFTRWGVEYTPVDLSDLDAVRAAITPRTKLIWVETPTNPLL 160 (388)
T ss_pred HHHHHHHHHH-hCCCCEEEEcCCC-----chHHHHHHHHhCcCCCeEEEEeCCCCHHHHHHhcCcCCeEEEEECCCCCcc
Confidence 3444444444 2333556665432 333444333332221233333333467888887654456666667777742
Q ss_pred -CCchHHHHHHHHHcCCeEEEc
Q 023076 260 -MRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 260 -~~~~~~ll~~~~~~gi~via~ 280 (287)
...-+++.+.|+++|+.++.=
T Consensus 161 ~~~dl~~I~~la~~~gi~lIvD 182 (388)
T PRK07811 161 SITDIAALAELAHDAGAKVVVD 182 (388)
T ss_pred eecCHHHHHHHHHHcCCEEEEE
Confidence 223448899999999988843
No 197
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=31.12 E-value=1.7e+02 Score=28.10 Aligned_cols=74 Identities=8% Similarity=0.033 Sum_probs=58.3
Q ss_pred HHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 212 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 212 ~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
.-+.+..|.+.|.--..|+.+-+....+.+...++ ..+.+-+|+++.....++..+..++.++.|.+--|++.+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~-~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGC-EAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCC-CEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccCCC
Confidence 44667889999999999999887766666655554 455678899987666668888999999999998888864
No 198
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=31.11 E-value=3.1e+02 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCC
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMAD 132 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~ 132 (287)
+.++..++++.-.+.|+..++...
T Consensus 20 s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 20 TVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 448888888888899999999753
No 199
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.58 E-value=4.1e+02 Score=24.00 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHH---HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC----CCHHHHHHHHH
Q 023076 174 TSSIVRESIDVSRR---RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN----FDTERLRIILE 243 (287)
Q Consensus 174 ~~~~i~~~le~SL~---rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn----~~~~~l~~~~~ 243 (287)
+++.+.+.+.+..+ ..|. ++.+..-++..+...+.+...+..+++.+.| +..|.++. .+|.++.++++
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~ 183 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYIS 183 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHH
Confidence 45555444444443 3343 4555555532221222556666677777777 56777664 35777666554
No 200
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=30.57 E-value=4.4e+02 Score=24.39 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCeEEEcccCCCCC
Q 023076 265 KMAELCQLTGVKLITSLPFLVNN 287 (287)
Q Consensus 265 ~ll~~~~~~gi~via~spl~~G~ 287 (287)
+-++.+++.|+.+..-++|.+||
T Consensus 241 ~ai~~L~~aGi~v~~qtvLl~gv 263 (331)
T TIGR00238 241 EAMKKLRTVNVTLLNQSVLLRGV 263 (331)
T ss_pred HHHHHHHHcCCEEEeecceECCc
Confidence 44556677777777777777664
No 201
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.45 E-value=2.4e+02 Score=24.90 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=52.4
Q ss_pred cceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCc-hHHHHHHHHH
Q 023076 194 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQL 272 (287)
Q Consensus 194 iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~-~~~ll~~~~~ 272 (287)
.++.++..|-+. +-++.+.++. .+.=-+.|=|-++.+.+.++++.+ .++++|+..+..-.-. -..+.+.|++
T Consensus 153 ~~i~~iEqP~~~-----~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~-~~d~v~~k~~~~GGit~~~~i~~~a~~ 225 (263)
T cd03320 153 GRIEYIEQPLPP-----DDLAELRRLA-AGVPIALDESLRRLDDPLALAAAG-ALGALVLKPALLGGPRALLELAEEARA 225 (263)
T ss_pred cCCceEECCCCh-----HHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcC-CCCEEEECchhcCCHHHHHHHHHHHHH
Confidence 466667766431 2345555665 344346666677888888888765 4777888876532212 2388999999
Q ss_pred cCCeEEEc
Q 023076 273 TGVKLITS 280 (287)
Q Consensus 273 ~gi~via~ 280 (287)
+|+.++..
T Consensus 226 ~gi~~~~~ 233 (263)
T cd03320 226 RGIPAVVS 233 (263)
T ss_pred cCCCEEEE
Confidence 99998764
No 202
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=30.43 E-value=4.5e+02 Score=24.40 Aligned_cols=80 Identities=8% Similarity=0.044 Sum_probs=52.7
Q ss_pred ceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHc
Q 023076 195 DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLT 273 (287)
Q Consensus 195 Dl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~ 273 (287)
++.++..|-. .++.+.+++++-.|. +.|=|-++.+.+.++++.+ ..+++|+..+.+- --.++++.|+++
T Consensus 162 ~l~~iEqP~~-------~~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~-a~dvi~ik~~~~G--Git~~lkiA~~~ 231 (327)
T PRK02901 162 PLEYVEQPCA-------TVEELAELRRRVGVPIAADESIRRAEDPLRVARAG-AADVAVLKVAPLG--GVRAALDIAEQI 231 (327)
T ss_pred CceEEecCCC-------CHHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcC-CCCEEEeCcchhC--CHHHHHHHHHHc
Confidence 5555555532 145566666654333 4555667888888887765 4788888877642 224788899999
Q ss_pred CCeEEEcccCC
Q 023076 274 GVKLITSLPFL 284 (287)
Q Consensus 274 gi~via~spl~ 284 (287)
||.++..|.+.
T Consensus 232 gi~v~v~s~~e 242 (327)
T PRK02901 232 GLPVVVSSALD 242 (327)
T ss_pred CCcEEEeCCcc
Confidence 99998766553
No 203
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.17 E-value=2.1e+02 Score=24.81 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCeEEEe
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~~~~~~~~~~~~~Q 252 (287)
+++...+.++ .|..-|++.|.+= +- .+ +..+.+++++++.-=..||..+- +.++++.+.+.|..|.+
T Consensus 25 ~~~~a~~i~~-al~~~Gi~~iEit---l~---~~---~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fiv-- 92 (212)
T PRK05718 25 KLEDAVPLAK-ALVAGGLPVLEVT---LR---TP---AALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIV-- 92 (212)
T ss_pred CHHHHHHHHH-HHHHcCCCEEEEe---cC---Cc---cHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEE--
Confidence 4455544443 4445566555554 21 11 24444555555433245776653 67888888888865542
Q ss_pred ecCCccCCCchHHHHHHHHHcCCeEE
Q 023076 253 VQHSVVDMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 253 ~~~n~~~~~~~~~ll~~~~~~gi~vi 278 (287)
+| ....+++++|++++|.++
T Consensus 93 ---sP---~~~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 93 ---SP---GLTPPLLKAAQEGPIPLI 112 (212)
T ss_pred ---CC---CCCHHHHHHHHHcCCCEe
Confidence 33 233388999999998877
No 204
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.09 E-value=4.7e+02 Score=24.54 Aligned_cols=89 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred EEeecCCCC----------CCcHHHHHHHHHHHHHcC----CccEEEec--CCCHHHHHHHHH--cCCCeEEEeecCCcc
Q 023076 197 LQFHWWDYS----------NPGYLDALNHLTDLKEEG----KIKTVALT--NFDTERLRIILE--NGIPVVSNQVQHSVV 258 (287)
Q Consensus 197 ~~lH~p~~~----------~~~~~e~~~aL~~l~~~G----~Ir~iGvS--n~~~~~l~~~~~--~~~~~~~~Q~~~n~~ 258 (287)
+.+|.+++. ...++++++++.+..+.+ +++++=+. |-+.+.++++.+ .+.+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568876532 112567788777776654 23344444 456677777765 245678888999987
Q ss_pred CC----Cc-hH---HHHHHHHHcCCeEEEcccCCC
Q 023076 259 DM----RP-QQ---KMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 259 ~~----~~-~~---~ll~~~~~~gi~via~spl~~ 285 (287)
.. .+ ++ .+....+++||.+....+.|.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 42 11 11 566778899999988776553
No 205
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=30.05 E-value=1.8e+02 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 023076 214 NHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (287)
Q Consensus 214 ~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~ 245 (287)
++++++++...-+.||++.++.+++.++.+.+
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~g 203 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAG 203 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC
Confidence 34444444322235677777777776666544
No 206
>TIGR00035 asp_race aspartate racemase.
Probab=29.95 E-value=3.2e+02 Score=23.60 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCC----------Cc-HHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN----------PG-YLDALNHLTDLKEEGKIKTVALTNFDTERL 238 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~----------~~-~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l 238 (287)
+-+..++-++..-.+.+.++++.+.+++|+..+ +. .....+.++.|.+.| +..|-++..+...+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 445666666777778888999999999875311 11 233556666666655 78999988777653
No 207
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.91 E-value=1.4e+02 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=12.2
Q ss_pred chHHHHHHHHHcCCeEEE
Q 023076 262 PQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 262 ~~~~ll~~~~~~gi~via 279 (287)
.+++++++|+++|+.++.
T Consensus 90 ~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 90 ESEELIEAAREAGIRVIG 107 (116)
T ss_dssp --HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHcCCEEEe
Confidence 455888888888888874
No 208
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=29.90 E-value=3.4e+02 Score=22.94 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEec
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDM 130 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDT 130 (287)
.|++++.++++.+++.|+...|.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 37788999999999999765543
No 209
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=29.80 E-value=4.2e+02 Score=23.94 Aligned_cols=149 Identities=13% Similarity=0.175 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCC--cHHHH--HHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGP--AEDLY--GIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~~l--G~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
+...+.++.-.+.+..|+..+..=|. .+..+ ...|++ + . .+..-..++.. +.++..++..+...
T Consensus 16 ~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~---~-~-g~~~i~Hltcr------~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 16 QNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN---V-V-GVETCMHLTCT------NMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH---h-c-CCCeeEEeccC------CCCHHHHHHHHHHH-
Confidence 44555666556788888988765432 23322 233332 1 0 11111223322 34556666666544
Q ss_pred HHcCCCccceEEeecCCC--------CCCcHHHHHHHHHHHHHc-CCccEEEecCCC--------HH-HHHHHH---HcC
Q 023076 187 RRMDVPCLDMLQFHWWDY--------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD--------TE-RLRIIL---ENG 245 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~--------~~~~~~e~~~aL~~l~~~-G~Ir~iGvSn~~--------~~-~l~~~~---~~~ 245 (287)
..+|++. ++.+-...+ ....++.+.+-++.+++. |.--.||+..|. .+ ++..+. +.|
T Consensus 84 ~~~Gi~n--iLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQN--ILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCCE--EEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6777653 344432111 111234455556666664 444689999773 11 233333 357
Q ss_pred CCeEEEeecCCccCCCchHHHHHHHHHcCCe
Q 023076 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (287)
Q Consensus 246 ~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~ 276 (287)
..+.+-|.-|+. ..-.+.++.|++.|+.
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~ 189 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGID 189 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCC
Confidence 778888888886 2334888999998653
No 210
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=29.63 E-value=99 Score=24.60 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEe
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVAL 230 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGv 230 (287)
+..+++.|+.+....+|.++++..+.-..+..+....++.+.+.--|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4455666666666678988888877655446677777777777622444433
No 211
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=29.61 E-value=2.5e+02 Score=21.22 Aligned_cols=62 Identities=16% Similarity=0.058 Sum_probs=42.8
Q ss_pred eEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC--CCccceEEeecCCCCCCcHHHHHHHHHHHH
Q 023076 156 FLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (287)
Q Consensus 156 ~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (287)
.+.-+.++-|.+. ...+..+++.+.+..+... ....|++++-.+.....++.+..+.|+.|.
T Consensus 41 ~RlGi~vsKK~g~---AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKN---AVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCc---hhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 3445666666432 5677888888887776543 336899999888776666888887777663
No 212
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=29.56 E-value=4.2e+02 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA 131 (287)
.+.++..++++.-.+.|++.|+..
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvG 40 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVT 40 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC
Confidence 344888889999889999999997
No 213
>PRK00915 2-isopropylmalate synthase; Validated
Probab=28.92 E-value=5e+02 Score=25.72 Aligned_cols=102 Identities=10% Similarity=0.052 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEecCCCHHHHHHHHH----cCC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILE----NGI 246 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~iGvSn~~~~~l~~~~~----~~~ 246 (287)
.++.+.-.+- -+.|.++|+|+|++= +|..... -++.+.++.+.++ .+..+++......++.+.+ .+.
T Consensus 22 ~~s~e~K~~i-a~~L~~~Gv~~IE~G---~p~~s~~----d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~ 93 (513)
T PRK00915 22 SLTVEEKLQI-AKQLERLGVDVIEAG---FPASSPG----DFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEA 93 (513)
T ss_pred CCCHHHHHHH-HHHHHHcCCCEEEEc---CCCCChH----HHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCC
Confidence 3455554444 445889998888874 3322111 1333344444333 5666666555667777663 343
Q ss_pred CeEEEeecCCccC------CCch------HHHHHHHHHcCCeEEEccc
Q 023076 247 PVVSNQVQHSVVD------MRPQ------QKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 247 ~~~~~Q~~~n~~~------~~~~------~~ll~~~~~~gi~via~sp 282 (287)
+...+-+.-|.++ ...+ .+.+++|+++|..+. |++
T Consensus 94 ~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~-f~~ 140 (513)
T PRK00915 94 PRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE-FSA 140 (513)
T ss_pred CEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-EEe
Confidence 3333333333321 1111 267788888888754 443
No 214
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.83 E-value=4.5e+02 Score=23.96 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=80.9
Q ss_pred HHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCC
Q 023076 113 AVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVP 192 (287)
Q Consensus 113 a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~d 192 (287)
..++-....+.|+|..|.... . +...| .++.-+-+... .+...+.+.+++.++..-++||++
T Consensus 23 VA~Vs~~Lae~g~NI~disq~-~--d~~~~------------~ffm~i~~~~~---~~~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 23 VAAVSGFLAEKGCYIVELTQF-D--DDESG------------RFFMRVSFHAQ---SAEAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred HHHHHHHHHHCCCCEEecccc-c--ccccC------------cEEEEEEEEcC---CCCCCCHHHHHHHHHHHHHHhCCe
Confidence 344455556999999997754 1 11111 12111111111 112457899999999999999976
Q ss_pred ccceEEeecCCCCC------CcHHHHHHHHHHHHHcCCc--cEEE-ecCCCHHHHHHHHHcCCCeEEEeecCCccCCC-c
Q 023076 193 CLDMLQFHWWDYSN------PGYLDALNHLTDLKEEGKI--KTVA-LTNFDTERLRIILENGIPVVSNQVQHSVVDMR-P 262 (287)
Q Consensus 193 yiDl~~lH~p~~~~------~~~~e~~~aL~~l~~~G~I--r~iG-vSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~-~ 262 (287)
+.++.-+... ......+++|-+..++|.. .-.+ +||. ++..+.+.+.|+|+..+... .-++. .
T Consensus 85 ----~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~-~~~~~~A~~~gIp~~~~~~~--~~~~~~~ 157 (289)
T PRK13010 85 ----WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNH-PDLQPLAVQHDIPFHHLPVT--PDTKAQQ 157 (289)
T ss_pred ----EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECC-hhHHHHHHHcCCCEEEeCCC--cccccch
Confidence 4555432210 0122356777778888864 3344 4554 34445566678776654332 22222 3
Q ss_pred hHHHHHHHHHcCCeEEE
Q 023076 263 QQKMAELCQLTGVKLIT 279 (287)
Q Consensus 263 ~~~ll~~~~~~gi~via 279 (287)
+..++++.++.++-++.
T Consensus 158 ~~~~~~~l~~~~~Dliv 174 (289)
T PRK13010 158 EAQILDLIETSGAELVV 174 (289)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 55788999998876654
No 215
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=28.71 E-value=3.7e+02 Score=23.75 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCC--HHHHHHHHHcCCCeEEEe
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 252 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~--~~~l~~~~~~~~~~~~~Q 252 (287)
..+...+.+.+++.+.+.- -+.+.-.... ....+.+...+.+|++.|- .|.+..|. ...+..+.+ .+|+.+-
T Consensus 102 ~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDDFGtG~ssl~~L~~--l~~d~iK 176 (256)
T COG2200 102 PGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLRQLRELGV--RIALDDFGTGYSSLSYLKR--LPPDILK 176 (256)
T ss_pred chHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHHHHCCC--eEEEECCCCCHHHHHHHhh--CCCCeEE
Confidence 4556677778888876643 2222211111 1224467888999999993 45666553 233444433 4677766
Q ss_pred ecCCccCC--------CchHHHHHHHHHcCCeEEEc
Q 023076 253 VQHSVVDM--------RPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 253 ~~~n~~~~--------~~~~~ll~~~~~~gi~via~ 280 (287)
+.-+++.. ..-+.++..|++.|+.++|-
T Consensus 177 ID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 177 IDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred ECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 66555431 12237889999999999974
No 216
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.54 E-value=4.9e+02 Score=24.24 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC---------CCCCC----cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMA---------DHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA---------~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~ 174 (287)
.+.++..++++...++|+..|+.. ..||. .++.+..+.+..+. ......+. + ...+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~-----~~~~~ll~----p--g~~~ 90 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQ-----AKIAALLL----P--GIGT 90 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCC-----CEEEEEec----c--Cccc
Confidence 355888899999899999999984 23343 24445444433211 11111111 1 1223
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec---CCCHHHHHHHH
Q 023076 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERLRIIL 242 (287)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS---n~~~~~l~~~~ 242 (287)
.+.++.+.+ .|+|.|-+. .|..+ .+...+.++.+++.|+--.+.+. .++++.+.+..
T Consensus 91 ~~dl~~a~~-----~gvd~iri~-~~~~e-----~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a 150 (337)
T PRK08195 91 VDDLKMAYD-----AGVRVVRVA-THCTE-----ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQA 150 (337)
T ss_pred HHHHHHHHH-----cCCCEEEEE-Eecch-----HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHH
Confidence 445544443 366655544 35322 34566777778888865444443 24555554443
No 217
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.14 E-value=5e+02 Score=24.22 Aligned_cols=117 Identities=14% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHh----hhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFIN----RVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~----~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (287)
.+.++...+++.+++.|++=+=-+ | .|.+|-+-|. ...+. -..++.++|. .....-..
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---G-GEPllR~dl~eIi~~l~~~----~~~~islTTN----------G~~L~~~a 104 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---G-GEPLLRKDLDEIIARLARL----GIRDLSLTTN----------GVLLARRA 104 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---C-CCchhhcCHHHHHHHHhhc----ccceEEEecc----------hhhHHHHH
Confidence 468999999999999999877433 3 2333332222 22111 0114555553 23344555
Q ss_pred HHHHHcCCCccceEEeecCCCC-------CCcHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHH
Q 023076 184 VSRRRMDVPCLDMLQFHWWDYS-------NPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILE 243 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~-------~~~~~e~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~ 243 (287)
.-|+.-|++.|.+ .+|..|++ ...++++++.++..++.|. |..+=+-+.+.+++..+++
T Consensus 105 ~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e 174 (322)
T COG2896 105 ADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLE 174 (322)
T ss_pred HHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 6677777766553 34544432 1126788888888888885 3456666677777777665
No 218
>PLN02389 biotin synthase
Probab=28.10 E-value=5.3e+02 Score=24.50 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEE-eecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHHHcCCCe
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN--FDTERLRIILENGIPV 248 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~-lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn--~~~~~l~~~~~~~~~~ 248 (287)
..+++.|.+.+++.. ..|...+-+.. .+........++..++.+..+++.|. .+.+|+ .+.+++.++.+.|+.
T Consensus 115 ~Ls~EeIl~~a~~~~-~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~i~~s~G~l~~E~l~~LkeAGld- 190 (379)
T PLN02389 115 LMSKDDVLEAAKRAK-EAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--EVCCTLGMLEKEQAAQLKEAGLT- 190 (379)
T ss_pred cCCHHHHHHHHHHHH-HcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--EEEECCCCCCHHHHHHHHHcCCC-
Confidence 368888888887644 56877654321 01111111126778888888887664 344444 467888888887743
Q ss_pred EEEeecCC--c--cC-----CCchH--HHHHHHHHcCCeEEEcccCCC
Q 023076 249 VSNQVQHS--V--VD-----MRPQQ--KMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 249 ~~~Q~~~n--~--~~-----~~~~~--~ll~~~~~~gi~via~spl~~ 285 (287)
.+++.+. . +. ...++ +.++.+++.|+.+-+.--+|-
T Consensus 191 -~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 191 -AYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred -EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 2222222 1 11 12222 788999999998765544443
No 219
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.98 E-value=2e+02 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=29.2
Q ss_pred CCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEc
Q 023076 246 IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 246 ~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~ 280 (287)
..+.+.=-+||++|.....++.+..++.|+.++..
T Consensus 184 ~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 184 PAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred ceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 45666777799998888889999999999999864
No 220
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.82 E-value=4.8e+02 Score=23.96 Aligned_cols=83 Identities=11% Similarity=0.189 Sum_probs=52.7
Q ss_pred EEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHH--
Q 023076 159 KVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE-- 236 (287)
Q Consensus 159 ~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~-- 236 (287)
++.+..|....++ ...+.+.+++..+.+|. ++.+ ..+.. .+..+..+.++.+..+| +..|-++..++.
T Consensus 25 ~i~~v~k~~~~pf---~~~~~~Gi~~aa~~~G~---~v~~-~~~~~--~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 25 RIAFIPKLVGVGF---FTSGGNGAKEAGKELGV---DVTY-DGPTE--PSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred EEEEEECCCCCHH---HHHHHHHHHHHHHHhCC---EEEE-ECCCC--CCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 4445556443322 35778888999999984 4443 33332 22556678889998876 888888876654
Q ss_pred --HHHHHHHcCCCeEEE
Q 023076 237 --RLRIILENGIPVVSN 251 (287)
Q Consensus 237 --~l~~~~~~~~~~~~~ 251 (287)
.+.++.+.++|+.++
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 455566667765554
No 221
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=27.70 E-value=4.1e+02 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMAD 132 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~ 132 (287)
.+.++..++++...+.|+..++...
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 3568888899998899999888753
No 222
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=27.60 E-value=5.7e+02 Score=24.70 Aligned_cols=145 Identities=17% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCC---
Q 023076 131 ADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP--- 207 (287)
Q Consensus 131 A~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~--- 207 (287)
.-+||..| -|-++|+.......+ ..-++|.+-..+ ..--+.+...+++.-++++ +.++.+|.|+....
T Consensus 96 d~V~Gg~~-~L~~aI~~~~~~~~p--~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~~~~ 166 (443)
T TIGR01862 96 DIVFGGEK-KLKKLIHEAFTEFPL--IKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFAGVSQS 166 (443)
T ss_pred ceeeCcHH-HHHHHHHHHHHhCCc--cceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCccCCccc
Confidence 34678644 457888765332211 012344432211 1112333333333333444 68899998876542
Q ss_pred -cHHHHHHH-HHHHH--------HcCCccEEEecCC--CHHHHHHHHHc-CCCeEEEeec--------------CCcc-C
Q 023076 208 -GYLDALNH-LTDLK--------EEGKIKTVALTNF--DTERLRIILEN-GIPVVSNQVQ--------------HSVV-D 259 (287)
Q Consensus 208 -~~~e~~~a-L~~l~--------~~G~Ir~iGvSn~--~~~~l~~~~~~-~~~~~~~Q~~--------------~n~~-~ 259 (287)
++..+.++ ++.+. ++++|--||-.++ +.+.+.++++. |+++...-.. +|++ .
T Consensus 167 ~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~~~~A~lniv~~ 246 (443)
T TIGR01862 167 KGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGGDAWVMRIYLEEMGIQVVATFTGDGTYDEIRLMHKAKLNLVHC 246 (443)
T ss_pred hHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcccHHHHHHHHHHcCCeEEEEECCCCCHHHHHhcccCCEEEEEC
Confidence 23334443 23343 2467888886554 34466666653 5554332111 2221 1
Q ss_pred CCchHHHHHHH-HHcCCeEEEcccCC
Q 023076 260 MRPQQKMAELC-QLTGVKLITSLPFL 284 (287)
Q Consensus 260 ~~~~~~ll~~~-~~~gi~via~spl~ 284 (287)
+......-++. ++.|++++...|++
T Consensus 247 ~~~~~~~A~~L~er~GiP~~~~~p~G 272 (443)
T TIGR01862 247 ARSANYIANELEERYGIPWMKIDFFG 272 (443)
T ss_pred hHHHHHHHHHHHHHhCCCeEecccCC
Confidence 11112233444 45599998877653
No 223
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=27.59 E-value=4.1e+02 Score=23.05 Aligned_cols=137 Identities=10% Similarity=0.062 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCC---CCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHH
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHY---GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~Y---G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (287)
....+++..|.+.|+..|=.+++. ...+.. .+.++ +. .+...+-+. + .+++.+.+-++
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~-~~~~~-----~i-~Il~GiEi~----~----~~~~~~~~~~~---- 76 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPESKPE-LEDLL-----GF-EIFRGVEIV----A----SNPSKLRGLVG---- 76 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccchhHH-HHHhc-----CC-cEEeeEEEe----c----CCHHHHHHHHH----
Confidence 467789999999999988555553 222211 12221 11 222222221 1 13344443333
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-------CCHHHHHHHHHcCCCeEEEeecCCccCC
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-------FDTERLRIILENGIPVVSNQVQHSVVDM 260 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-------~~~~~l~~~~~~~~~~~~~Q~~~n~~~~ 260 (287)
+. .+.+|++.+| |. .+++. ..+.+.+.|.-||--. +....++.+.++++-+. +.++.+-+
T Consensus 77 ~~-~~~~d~v~v~-~~-----~~~~~---~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lE---In~s~~~~ 143 (237)
T PRK00912 77 KF-RKKVDVLAVH-GG-----DEKVN---RAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIE---FNLRDILK 143 (237)
T ss_pred hc-cCcccEEEEe-CC-----CHHHH---HHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEE---EEchHhhh
Confidence 32 2346888888 21 12222 3577888888888653 23344555666665444 34433211
Q ss_pred ----------CchHHHHHHHHHcCCeEEE
Q 023076 261 ----------RPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 261 ----------~~~~~ll~~~~~~gi~via 279 (287)
.+..+++..|++.|+.++.
T Consensus 144 ~~~~~r~~~~~~~~~~~~~~~~~g~piii 172 (237)
T PRK00912 144 SRGGRRARTLSNFRDNLALARKYDFPLVL 172 (237)
T ss_pred hcccHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1124799999999988874
No 224
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=27.55 E-value=4.6e+02 Score=23.69 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHHHHc------CCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHH
Q 023076 170 PVKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 243 (287)
Q Consensus 170 ~~~~~~~~i~~~le~SL~rL------g~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~ 243 (287)
....+.+...+..+-..+-+ ++++|-|=.+.++..-.|+..|++++-+.|.++|-+ -+=-++-++...+++.+
T Consensus 78 aGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~-VlPY~~~D~v~a~rLed 156 (267)
T CHL00162 78 AGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT-VLPYINADPMLAKHLED 156 (267)
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE-EeecCCCCHHHHHHHHH
Confidence 44567777666666666666 688888777777777778889999999999999954 33445556666777766
Q ss_pred cCCCeEEEeecCCccCCC---chHHHHH-HHHHcCCeEEEcccC
Q 023076 244 NGIPVVSNQVQHSVVDMR---PQQKMAE-LCQLTGVKLITSLPF 283 (287)
Q Consensus 244 ~~~~~~~~Q~~~n~~~~~---~~~~ll~-~~~~~gi~via~spl 283 (287)
.| +.+++.--+|+=.. .....++ .+++.++.++.-.-+
T Consensus 157 ~G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGI 198 (267)
T CHL00162 157 IG--CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGI 198 (267)
T ss_pred cC--CeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCc
Confidence 55 55555555554210 1113333 344456777765433
No 225
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=27.53 E-value=4.4e+02 Score=23.44 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=55.0
Q ss_pred HHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEec-cccCCCC------CCCCHHHHHHHHHHH--
Q 023076 115 DAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL-TKWVPPP------VKMTSSIVRESIDVS-- 185 (287)
Q Consensus 115 ~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~-tK~~~~~------~~~~~~~i~~~le~S-- 185 (287)
+.+++|++.|...|.....-. .+++ -+.+++.+.. +.+. +.-.|.. +....+.+.+.+++.
T Consensus 86 ~vi~~al~~G~~iINsis~~~-~~~~-~~l~~~~~~~--------vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~ 155 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQ-DPAM-LEVAAEYGVP--------LVLMHMRGTPRTMQENPHYEDVVEEVLRFLEARAE 155 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCC-Cchh-HHHHHHcCCc--------EEEEeCCCCCcccccCCCcccHHHHHHHHHHHHHH
Confidence 467778888988886543221 3333 3445543221 2222 1111110 000123344444444
Q ss_pred -HHHcCCCccceEEeecCCC--CCCcHHHHHHHHHHHHHcCCccEEEecCCC
Q 023076 186 -RRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (287)
Q Consensus 186 -L~rLg~dyiDl~~lH~p~~--~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~ 234 (287)
+++.|++.-|+++=-...+ ......++++.++++++.|.=-.+|+||-+
T Consensus 156 ~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 156 ELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 4566887556654211111 111234577778888888866689999854
No 226
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=27.01 E-value=2.1e+02 Score=25.34 Aligned_cols=66 Identities=14% Similarity=0.011 Sum_probs=45.9
Q ss_pred HHHHHcCCc-cEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 217 TDLKEEGKI-KTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 217 ~~l~~~G~I-r~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
.+..++|+. -.+.+..-++..++.+...|+++.++-.|+++++...-..++..++..|+.++..-|
T Consensus 4 k~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 4 KQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 344455775 223344456777777777788999999999997655445678888888887776644
No 227
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.89 E-value=4.1e+02 Score=22.82 Aligned_cols=121 Identities=9% Similarity=0.106 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC-CCCCC-cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMA-DHYGP-AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVS 185 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA-~~YG~-sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~S 185 (287)
.+.++..++++.-.+.||..|+.. +..+. ..+.+.+..+..+.. .+.... ....+.++..++..
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~-------~~~~~~i~~~~~~~ 76 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNA-------RLQALC-------RANEEDIERAVEAA 76 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSS-------EEEEEE-------ESCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccc-------ccceee-------eehHHHHHHHHHhh
Confidence 566888999999889999999999 33332 222233333332221 111111 12456666666533
Q ss_pred HHHcCCCccceEEeecC----CCCCCc----HHHHHHHHHHHHHcCCccEEEec---CCCHHHHHHHHH
Q 023076 186 RRRMDVPCLDMLQFHWW----DYSNPG----YLDALNHLTDLKEEGKIKTVALT---NFDTERLRIILE 243 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p----~~~~~~----~~e~~~aL~~l~~~G~Ir~iGvS---n~~~~~l~~~~~ 243 (287)
...|.+.+.++.-=++ ...... .+.+.+.++.+++.|.-..++.- .++++.+.++.+
T Consensus 77 -~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 77 -KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAE 144 (237)
T ss_dssp -HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHH
T ss_pred -HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHH
Confidence 4678877776642211 000011 34455666777888888888864 346666555543
No 228
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=26.79 E-value=1.2e+02 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=17.0
Q ss_pred CCchHHHHHHHHHcCCeEEEccc
Q 023076 260 MRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~sp 282 (287)
...|..+++++++.|+.++.|++
T Consensus 44 K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 44 KADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp SS--HHHHHHHHHCTSEEEEE-H
T ss_pred cCCCHHHHHHHHHhCCCeEEECH
Confidence 45567999999999999988864
No 229
>PRK10508 hypothetical protein; Provisional
Probab=26.71 E-value=1e+02 Score=28.68 Aligned_cols=42 Identities=10% Similarity=-0.010 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHH
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 220 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~ 220 (287)
.+|+.|.+.|++..+++|+|.+ +++.+.. +.++.++.++-|.
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~~---~~e~~~~S~~lla 327 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQIF---DHQARLHSFELAM 327 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCCC---CHHHHHHHHHHHH
Confidence 4889999999999999998876 3443332 2455555544443
No 230
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=26.62 E-value=2.7e+02 Score=20.58 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCC-----CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDY-----SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~-----~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (287)
..-.+++++.++.+|..-.++|+.-.+-. +.|+.+.+....-.+...|.++.-=+--++++++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 34456778888889999888887754311 23446667777788889998888666678888887765
No 231
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=26.57 E-value=4.7e+02 Score=23.39 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeEEE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 251 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--~~~~~~~ 251 (287)
+.+.+.+..++.. .-|-|+||+=.- +.+.. +.+.....++.+++.-.+ -|-+-+++++.++++++. |. +.+|
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~e-E~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEE-EPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchh-HHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 4455555544433 568888888642 11111 134455555555544222 367778889999998886 63 4444
Q ss_pred eecCCccCCCchHHHHHHHHHcCCeEEEc
Q 023076 252 QVQHSVVDMRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 252 Q~~~n~~~~~~~~~ll~~~~~~gi~via~ 280 (287)
-+...- ...+++++.++++|+.++..
T Consensus 97 sIs~~~---~~~~~~~~l~~~~g~~vv~m 122 (261)
T PRK07535 97 SVSAEG---EKLEVVLPLVKKYNAPVVAL 122 (261)
T ss_pred eCCCCC---ccCHHHHHHHHHhCCCEEEE
Confidence 444321 11337888888998888864
No 232
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.46 E-value=5.4e+02 Score=24.08 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHcCCCeEEEeecCCccCC-CchHHHHHHHHHcCCeEEE
Q 023076 233 FDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~~Q~~~n~~~~-~~~~~ll~~~~~~gi~via 279 (287)
.+++.++++++...+..++..+.|+.-. ..-+++.+.|+++|+.++.
T Consensus 119 ~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~viv 166 (378)
T TIGR01329 119 TDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVV 166 (378)
T ss_pred CCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEE
Confidence 3566666665433445555555565321 1233677777777777664
No 233
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=26.40 E-value=4e+02 Score=22.60 Aligned_cols=135 Identities=15% Similarity=0.066 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC----------CCCCC----cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCC
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMA----------DHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMT 174 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA----------~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~ 174 (287)
+.++..+..+.+.+.|+..+|-- +.||. ..+.+-+.++..... . .+...+++. .+.. ..
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~-~~~v~vk~r--~~~~---~~ 137 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-V-PIPVTVKIR--LGWD---DE 137 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-c-CCCEEEEEe--eccC---Cc
Confidence 45777888888889999988752 34553 233445555554221 1 111122221 1111 11
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCC-CcHHHHHHHHHHHHHcCCccEEEecCC-CHHHHHHHHHcCCCeEEEe
Q 023076 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~-~~~~e~~~aL~~l~~~G~Ir~iGvSn~-~~~~l~~~~~~~~~~~~~Q 252 (287)
+...+- -+.|+.+|+ |.+.+|...... ......|+.+.++++.-.+.-++.... +.+++.++++.+ ..+.++
T Consensus 138 -~~~~~~-~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~ 211 (231)
T cd02801 138 -EETLEL-AKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQT-GVDGVM 211 (231)
T ss_pred -hHHHHH-HHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhc-CCCEEE
Confidence 122222 234556675 555667542110 001124666777888777777776654 788888888753 355556
Q ss_pred ecCC
Q 023076 253 VQHS 256 (287)
Q Consensus 253 ~~~n 256 (287)
+--.
T Consensus 212 igr~ 215 (231)
T cd02801 212 IGRG 215 (231)
T ss_pred EcHH
Confidence 5543
No 234
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=26.39 E-value=3.6e+02 Score=23.06 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEE-ecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCC--CCCCC-----HHHHHHHHHHH-
Q 023076 115 DAMLRYADAGLTTF-DMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP--PVKMT-----SSIVRESIDVS- 185 (287)
Q Consensus 115 ~~l~~A~~~Gin~f-DTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~--~~~~~-----~~~i~~~le~S- 185 (287)
+.+++|++.|...+ |+...-. .++ +-+.++++... -+...+...+. +.... .+.+.+.+++.
T Consensus 83 ~v~~~aL~~g~~~ind~~~~~~-~~~-~~~l~a~~~~~-------vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i 153 (210)
T PF00809_consen 83 EVAEAALKAGADIINDISGFED-DPE-MLPLAAEYGAP-------VVLMHSDGNPKGMPETADYRLDIAEEIIEFLEERI 153 (210)
T ss_dssp HHHHHHHHHTSSEEEETTTTSS-STT-HHHHHHHHTSE-------EEEESESSETTTTTSSHHHSHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcceEEecccccc-cch-hhhhhhcCCCE-------EEEEecccccccccccchhhhhHHHHHHHHHHHHH
Confidence 46667777899876 4443222 344 35666665432 12222221111 11111 12333333332
Q ss_pred --HHHcCCCccceEEeecCCCCC--CcHHHHHHHHHHHHHc-CCccEEEecC
Q 023076 186 --RRRMDVPCLDMLQFHWWDYSN--PGYLDALNHLTDLKEE-GKIKTVALTN 232 (287)
Q Consensus 186 --L~rLg~dyiDl~~lH~p~~~~--~~~~e~~~aL~~l~~~-G~Ir~iGvSn 232 (287)
|++.|++.=|+++==-..+.. ....++++.++.+++. |...-+|+|.
T Consensus 154 ~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~sr 205 (210)
T PF00809_consen 154 EALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSR 205 (210)
T ss_dssp HHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETT
T ss_pred HHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 334788776666421122211 1234677888888889 9999999885
No 235
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.25 E-value=3.7e+02 Score=24.37 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=15.0
Q ss_pred EEEecCCCHHHHHHHHHcCCCeEEEee
Q 023076 227 TVALTNFDTERLRIILENGIPVVSNQV 253 (287)
Q Consensus 227 ~iGvSn~~~~~l~~~~~~~~~~~~~Q~ 253 (287)
.||+|.++.+++.++.+.+ ++.+++
T Consensus 190 ~Igvsv~tleea~~A~~~g--aDyI~l 214 (277)
T PRK08072 190 KIEVETETEEQVREAVAAG--ADIIMF 214 (277)
T ss_pred EEEEEeCCHHHHHHHHHcC--CCEEEE
Confidence 4777777777766666544 344444
No 236
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=26.23 E-value=2.5e+02 Score=27.49 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=40.4
Q ss_pred HHHcCCCccceEEee-cCCCCCCcHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEEeecCCc
Q 023076 186 RRRMDVPCLDMLQFH-WWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 257 (287)
Q Consensus 186 L~rLg~dyiDl~~lH-~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~Q~~~n~ 257 (287)
...+|.|++-+.+.. .|.. .. .+ ....+.+... ++.+||- |-+++.+.++.+. ..++++|++-+-
T Consensus 273 a~~~GaD~lGfIf~~~SpR~-V~-~~-~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~-~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRY-VS-LE-QAQEIIAAAP---LRYVGVFRNADIEDIVDIAKQ-LSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCC-CC-HH-HHHHHHHhCC---CCEEEEEeCCCHHHHHHHHHH-cCCCEEEeCCCC
Confidence 345888988886432 2221 21 33 3332322222 8899987 7788888887764 468999998753
No 237
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=26.08 E-value=99 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.319 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCC
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYG 135 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG 135 (287)
+.+.+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 457788899999999999999999984
No 238
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=25.68 E-value=5e+02 Score=23.45 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCC-C------CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCC
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWD-Y------SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGI 246 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~-~------~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~ 246 (287)
+++.+++.+++.+++ |.+.|-+|.--... + .....++..+.++..++.|..-.+=+. ....++.+++.+.
T Consensus 118 ~~~~~~~~v~~~~~~-G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~--~~~~i~~~l~~G~ 194 (342)
T cd01299 118 GVEEVRAAVREQLRR-GADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY--GAEAIRRAIRAGV 194 (342)
T ss_pred CHHHHHHHHHHHHHh-CCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHcCC
Confidence 578888888887765 99988888632110 0 011245666777888888864333332 4456777777663
Q ss_pred CeEEEeecCCccCCCchHHHHHHHHHcCCeEE
Q 023076 247 PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 247 ~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~vi 278 (287)
. .+ ++.. ...++.++..+++|+.++
T Consensus 195 ~--~i--~H~~---~~~~~~~~~l~~~g~~~~ 219 (342)
T cd01299 195 D--TI--EHGF---LIDDETIELMKEKGIFLV 219 (342)
T ss_pred C--EE--eecC---CCCHHHHHHHHHCCcEEe
Confidence 2 22 2211 123477889999999765
No 239
>PTZ00413 lipoate synthase; Provisional
Probab=25.39 E-value=6.2e+02 Score=24.37 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCEEecCCCCCC-----cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCC--CHHHH
Q 023076 106 GRIDRDDAVDAMLRYADAGLTTFDMADHYGP-----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKM--TSSIV 178 (287)
Q Consensus 106 ~~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~-----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~--~~~~i 178 (287)
...|.++..+.-+++.+.|++|+=.+...++ .-..+.+.++....... .+.+.+-+. ++ +.+.+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p-~~~Ievlig--------Df~g~~e~l 245 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNP-ELLLEALVG--------DFHGDLKSV 245 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCC-CCeEEEcCC--------ccccCHHHH
Q ss_pred HHHHHHHHHHc--CCCccceEEeecCCCCCCcHHHHHHHHHHHHH--cCCccE-----EEecCCCHHHHHHHHH-cCCCe
Q 023076 179 RESIDVSRRRM--DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKT-----VALTNFDTERLRIILE-NGIPV 248 (287)
Q Consensus 179 ~~~le~SL~rL--g~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~--~G~Ir~-----iGvSn~~~~~l~~~~~-~~~~~ 248 (287)
+.-.+.-+.++ +++.+-=++=.--++... +++.|+.|+..++ .|.|.- +|+..-..+.++-+.. ....+
T Consensus 246 ~~L~eAG~dvynHNLETv~rLyp~VRt~~at-Ye~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGV 324 (398)
T PTZ00413 246 EKLANSPLSVYAHNIECVERITPYVRDRRAS-YRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGV 324 (398)
T ss_pred HHHHhcCCCEEecccccCHhHHHHHccCcCC-HHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCC
Q ss_pred EEEee-cC-----------CccCCCchHHHHHHHHHcCCeEEEcccCCC
Q 023076 249 VSNQV-QH-----------SVVDMRPQQKMAELCQLTGVKLITSLPFLV 285 (287)
Q Consensus 249 ~~~Q~-~~-----------n~~~~~~~~~ll~~~~~~gi~via~spl~~ 285 (287)
+++.+ +| ..+.+..-+.+-+.+.+.|...++-.||-+
T Consensus 325 DivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 325 SAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred cEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
No 240
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=25.22 E-value=3.5e+02 Score=24.85 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=39.3
Q ss_pred HHHHHHHHcCCccEEEecC--CCHHH------------H----HHHHHcCC-CeEEEeecCCccCCCchHHHHHHHHHcC
Q 023076 214 NHLTDLKEEGKIKTVALTN--FDTER------------L----RIILENGI-PVVSNQVQHSVVDMRPQQKMAELCQLTG 274 (287)
Q Consensus 214 ~aL~~l~~~G~Ir~iGvSn--~~~~~------------l----~~~~~~~~-~~~~~Q~~~n~~~~~~~~~ll~~~~~~g 274 (287)
+.+++|++.|. ..|.||- .+++. + +.+.+.|+ ++.++-+-..-.+...-.+++++++++|
T Consensus 105 ~~~~~L~~aGl-~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 105 RFAAELADAGL-KRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred HHHHHHHHcCC-CeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 34678888884 4566653 33322 1 22223455 4544433222112222338899999998
Q ss_pred CeE--EEcccCCCC
Q 023076 275 VKL--ITSLPFLVN 286 (287)
Q Consensus 275 i~v--ia~spl~~G 286 (287)
+.+ +-+-|++.+
T Consensus 184 i~~~~ie~mP~g~~ 197 (329)
T PRK13361 184 LDIAFIEEMPLGEI 197 (329)
T ss_pred CeEEEEecccCCCc
Confidence 754 567787764
No 241
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=25.17 E-value=2.6e+02 Score=21.39 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=11.5
Q ss_pred hHHHHHHHHHcCCeEEEcc
Q 023076 263 QQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 263 ~~~ll~~~~~~gi~via~s 281 (287)
..++.++++++||++..+.
T Consensus 68 ~~~~~~~l~~~gI~vE~m~ 86 (109)
T cd00248 68 PRALRAALRAAGIGVEVMS 86 (109)
T ss_pred CHHHHHHHHHcCCeEEEeC
Confidence 3456666666666666543
No 242
>PRK10200 putative racemase; Provisional
Probab=25.04 E-value=4.6e+02 Score=22.81 Aligned_cols=69 Identities=14% Similarity=0.047 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCC----------CCc-HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHH
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----------NPG-YLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 242 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~----------~~~-~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~ 242 (287)
+-+..++-++..-.+.+.+++|.+.+|.++.. .++ .....+.++.|.+.| ++.|-+...++....+.+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 44666777777777888899999999986431 111 344667777888887 799999887776554444
Q ss_pred H
Q 023076 243 E 243 (287)
Q Consensus 243 ~ 243 (287)
+
T Consensus 94 ~ 94 (230)
T PRK10200 94 E 94 (230)
T ss_pred H
Confidence 3
No 243
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.99 E-value=4.1e+02 Score=22.22 Aligned_cols=86 Identities=9% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc--CCccEEEecCCCHH--HHHHHHHcCCCeEEEeecCCccCCC
Q 023076 186 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GKIKTVALTNFDTE--RLRIILENGIPVVSNQVQHSVVDMR 261 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~Ir~iGvSn~~~~--~l~~~~~~~~~~~~~Q~~~n~~~~~ 261 (287)
.+.| -+.+|++=+-++-. .....+.++++++. +..-.+++--.++. +++++.+.|..+.++..+-+. .
T Consensus 18 ~~~l-~~~v~~iev~~~l~----~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~---~ 89 (206)
T TIGR03128 18 AEKV-ADYVDIIEIGTPLI----KNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADD---A 89 (206)
T ss_pred HHHc-ccCeeEEEeCCHHH----HHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCH---H
Confidence 3355 35567665532210 22345566666665 32222333222333 677777777555554443221 1
Q ss_pred chHHHHHHHHHcCCeEEE
Q 023076 262 PQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 262 ~~~~ll~~~~~~gi~via 279 (287)
.-.+++++|+++|+.++.
T Consensus 90 ~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 124788888888887764
No 244
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.98 E-value=2.7e+02 Score=20.13 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=30.4
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHHHcC-CCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEc
Q 023076 216 LTDLKEEGKIKTVALTNFDTERLRIILENG-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 216 L~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~-~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~ 280 (287)
++++++.|++ .+ ...+..++++.+ ....++--..+. ..-..+..+|++++|+++-+
T Consensus 3 ~~~~~ragkl-~~-----G~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp~~~~ 59 (82)
T PRK13602 3 YEKVSQAKSI-VI-----GTKQTVKALKRGSVKEVVVAEDADP---RLTEKVEALANEKGVPVSKV 59 (82)
T ss_pred hHHHHhcCCE-EE-----cHHHHHHHHHcCCeeEEEEECCCCH---HHHHHHHHHHHHcCCCEEEE
Confidence 3556666653 22 345566666554 334433333332 23346777788888877654
No 245
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=24.93 E-value=4.5e+02 Score=23.94 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=39.0
Q ss_pred HHHHHHHcCCccEEEecC--CCH------------HHH----HHHHHcCC-CeEEEeecCCccCCCchHHHHHHHHHcCC
Q 023076 215 HLTDLKEEGKIKTVALTN--FDT------------ERL----RIILENGI-PVVSNQVQHSVVDMRPQQKMAELCQLTGV 275 (287)
Q Consensus 215 aL~~l~~~G~Ir~iGvSn--~~~------------~~l----~~~~~~~~-~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi 275 (287)
.+++|++.|. ..|.+|- .++ +.+ +.+.+.+. ++.++.+-..-.+...-.+++++++++|+
T Consensus 110 ~~~~L~~agl-~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 110 RAAALKDAGL-DRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred HHHHHHHcCC-CEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 4678888886 4466663 222 222 22333454 44433322211112223388999999987
Q ss_pred e--EEEcccCCCC
Q 023076 276 K--LITSLPFLVN 286 (287)
Q Consensus 276 ~--via~spl~~G 286 (287)
. ++.|.|++.+
T Consensus 189 ~v~~ie~~p~~~~ 201 (331)
T PRK00164 189 QLRFIELMPTGEG 201 (331)
T ss_pred eEEEEEeeECCCC
Confidence 4 5777787765
No 246
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.88 E-value=27 Score=32.96 Aligned_cols=147 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCC--cHH---HHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGP--AED---LYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESID 183 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~--sE~---~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le 183 (287)
+.++..+-++.|.+.|++.+=|+=+... .+. .+.+.++......- ++..++ + |
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~-~v~~Di--s----p--------------- 69 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGM-EVIADI--S----P--------------- 69 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT--EEEEEE-------C---------------
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCC-EEEEEC--C----H---------------
Confidence 5688889999999999998888765532 111 12333332222211 122221 1 1
Q ss_pred HHHHHcCCCccceEEeecC-------CCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCC
Q 023076 184 VSRRRMDVPCLDMLQFHWW-------DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS 256 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p-------~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n 256 (287)
.+|++||.++-|+-.++.. |..-. .+.+.+|-+.|.--.+=.|+.+.+.+..+++.+..+.-+..-+|
T Consensus 70 ~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~-----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HN 144 (357)
T PF05913_consen 70 KVLKKLGISYDDLSFFKELGIDGLRLDYGFS-----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHN 144 (357)
T ss_dssp CHHHTTT-BTTBTHHHHHHT-SEEEESSS-S-----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE--
T ss_pred HHHHHcCCCHHHHHHHHHcCCCEEEECCCCC-----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEec
Confidence 1344455544444333321 22211 12234455557766777888888899998876643433333344
Q ss_pred ccCCCchH--------HHHHHHHHcCCeEEEcccC
Q 023076 257 VVDMRPQQ--------KMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 257 ~~~~~~~~--------~ll~~~~~~gi~via~spl 283 (287)
.. +.++. +.=.+.++.|+.+.|+-|=
T Consensus 145 fY-Pr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g 178 (357)
T PF05913_consen 145 FY-PRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPG 178 (357)
T ss_dssp -B--STT-SB-HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred cc-CCCCCCCCHHHHHHHHHHHHHCCCcEEEEecC
Confidence 32 22221 3345778999999998663
No 247
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=24.85 E-value=3.9e+02 Score=26.13 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=45.5
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHc------CCC-eEEEeecCCccCCCchHHHHHHHHHcCCeEEEcc
Q 023076 217 TDLKEEGKIKTVALTNFDTERLRIILEN------GIP-VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~~------~~~-~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~s 281 (287)
..+-+.|-...+|....+++++++.++. +-+ |-+|-+ .++-+...+.++++.|.++++.++..+
T Consensus 37 aAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 37 IAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPALEWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCcccHHHHHHHHHHcCCCEEEec
Confidence 4567889999999999999998887641 114 666654 333233335688999999999887655
No 248
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=24.82 E-value=5.7e+02 Score=23.81 Aligned_cols=149 Identities=10% Similarity=-0.001 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCc--HHH--HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPA--EDL--YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~s--E~~--lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (287)
+.++..+.++.+.+.|++.|=.- .++.. ++- .=+++++.-.+ ++ .+.+-. ...++.+...+-++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~---~~--~l~vDa-----n~~~~~~~A~~~~~- 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGP---DM--RLMHDG-----AHWYSRADALRLGR- 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCC---CC--eEEEEC-----CCCcCHHHHHHHHH-
Confidence 55777788888899999988652 22211 111 11233321111 11 122211 12345554432222
Q ss_pred HHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEecCCC-HHHHHHHHHcCCCeEEEeecCCccCCC-
Q 023076 185 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFD-TERLRIILENGIPVVSNQVQHSVVDMR- 261 (287)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir-~iGvSn~~-~~~l~~~~~~~~~~~~~Q~~~n~~~~~- 261 (287)
.|+. +++.++..|-+. +-++.+.+++++-.|- ..|=+-++ .++++++++.+ .++++|+..+..-.-
T Consensus 211 ~l~~-----~~l~~iEeP~~~-----~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~-a~d~v~~d~~~~GGit 279 (368)
T cd03329 211 ALEE-----LGFFWYEDPLRE-----ASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAG-ATDFLRADVNLVGGIT 279 (368)
T ss_pred Hhhh-----cCCCeEeCCCCc-----hhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhC-CCCEEecCccccCCHH
Confidence 2333 355666665432 2246667888875554 23444567 88899998876 478888887754221
Q ss_pred chHHHHHHHHHcCCeEEEc
Q 023076 262 PQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 262 ~~~~ll~~~~~~gi~via~ 280 (287)
.-.++...|+++|+.+...
T Consensus 280 ~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 280 GAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 2238999999999998754
No 249
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=24.66 E-value=6.2e+02 Score=24.14 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=10.0
Q ss_pred HHcCCeEEEcccCC
Q 023076 271 QLTGVKLITSLPFL 284 (287)
Q Consensus 271 ~~~gi~via~spl~ 284 (287)
++.||+++...|++
T Consensus 234 ~~~GiP~~~~~p~G 247 (430)
T cd01981 234 EEFGMPSVKITPIG 247 (430)
T ss_pred HHhCCCeEeccCCC
Confidence 45588888777765
No 250
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=24.52 E-value=6.1e+02 Score=23.99 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=43.9
Q ss_pred HHHHHHHHHcC-CCccceEEeecCCCCCCcHH---HHHHHHHHHHHcCCccEEEec-CCCHHHHHHHHHcCCCeEEE
Q 023076 180 ESIDVSRRRMD-VPCLDMLQFHWWDYSNPGYL---DALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSN 251 (287)
Q Consensus 180 ~~le~SL~rLg-~dyiDl~~lH~p~~~~~~~~---e~~~aL~~l~~~G~Ir~iGvS-n~~~~~l~~~~~~~~~~~~~ 251 (287)
..+-+.|+..| +|||++.--++......... -.....+..++...+--|.+. -+++++.++++++| ..|.+
T Consensus 240 ~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g-~aDlV 315 (363)
T COG1902 240 VELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG-RADLV 315 (363)
T ss_pred HHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCCEE
Confidence 35566788899 79999987665311111011 122334556666666666666 37899999999887 34443
No 251
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=24.51 E-value=1.5e+02 Score=22.84 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 231 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS 231 (287)
+..+++.|+.+....+|.+++..++.-.....+....++.|.+.| |+-+-++
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTAD 102 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEec
Confidence 455666666666577899999887765555667777777777766 4444443
No 252
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=24.31 E-value=3.3e+02 Score=26.12 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcC-CccEEEecCC---CHHHHHHHHHcCCCeEEEeecCCcc-CCCchHHHHHHHHHcCCeEE
Q 023076 211 DALNHLTDLKEEG-KIKTVALTNF---DTERLRIILENGIPVVSNQVQHSVV-DMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 211 e~~~aL~~l~~~G-~Ir~iGvSn~---~~~~l~~~~~~~~~~~~~Q~~~n~~-~~~~~~~ll~~~~~~gi~vi 278 (287)
.+++.+..|.++| .|.++.|-+. +.++++++++......++|.--|-. .-.+-.++-+.|+++|+.+.
T Consensus 103 aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fH 175 (386)
T COG1104 103 AVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFH 175 (386)
T ss_pred HHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEE
Confidence 4555556665556 5666666653 4666667665433333333222211 01244477788888886554
No 253
>PRK10551 phage resistance protein; Provisional
Probab=24.29 E-value=2.9e+02 Score=27.33 Aligned_cols=100 Identities=7% Similarity=0.107 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC--HHHHHHHHHcCCCeEEEee
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQV 253 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~--~~~l~~~~~~~~~~~~~Q~ 253 (287)
+.+.+.+.+.++.++.+..-+. +.-.+.......+..+.++.|++.|- .|.+.+|. ...+..+.. .+++.+-+
T Consensus 364 ~~f~~~l~~~l~~~~~~~~~Lv-lEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~L~~--l~vD~lKI 438 (518)
T PRK10551 364 DSFKADVQRLLASLPADHFQIV-LEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHSALIYLER--FTLDYLKI 438 (518)
T ss_pred chHHHHHHHHHHhCCCCcceEE-EEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCchhHHHHHh--CCCCEEEE
Confidence 3455666777777776543322 22222111112345678899999997 56666654 233343432 35666655
Q ss_pred cCCccCC---C-----chHHHHHHHHHcCCeEEEc
Q 023076 254 QHSVVDM---R-----PQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 254 ~~n~~~~---~-----~~~~ll~~~~~~gi~via~ 280 (287)
.-+.+.. . .-+.++..|++.|+.++|-
T Consensus 439 D~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 439 DRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred CHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 5443321 1 1236889999999999874
No 254
>PRK07671 cystathionine beta-lyase; Provisional
Probab=24.18 E-value=4.3e+02 Score=24.78 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=6.9
Q ss_pred HHHHHHHHcCCeEE
Q 023076 265 KMAELCQLTGVKLI 278 (287)
Q Consensus 265 ~ll~~~~~~gi~vi 278 (287)
++.+.|+++|+.++
T Consensus 155 ~I~~la~~~g~~lv 168 (377)
T PRK07671 155 KISTIAKEKGLLTI 168 (377)
T ss_pred HHHHHHHHcCCEEE
Confidence 44455555554444
No 255
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=24.15 E-value=2.9e+02 Score=24.25 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC---CCeEE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG---IPVVS 250 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~---~~~~~ 250 (287)
+++.+.+.++....++|-+|+-+. ++.|.+... -..+-++||+.+.++...+.+ ++|.+
T Consensus 22 ~~~~l~~~l~~~~~~~Gf~~~~~~-~~~~~~~~~-----------------~~~~~~~nyP~~W~~~Y~~~~y~~~DPvv 83 (240)
T PRK10188 22 AAEEVYHELQLQTQQLEYDYYSLC-VRHPVPFTR-----------------PKVAFYTTYPEAWVSHYQAENYFAIDPVL 83 (240)
T ss_pred CHHHHHHHHHHHHHHCCCccEeee-cccCCCCCC-----------------CceEEecCCCHHHHHHHHHCCCeeeCHHH
Confidence 678999999999999998885442 222211110 013456888888877776543 22322
Q ss_pred Ee--ecCCccCC-----CchHHHHHHHHHcCC
Q 023076 251 NQ--VQHSVVDM-----RPQQKMAELCQLTGV 275 (287)
Q Consensus 251 ~Q--~~~n~~~~-----~~~~~ll~~~~~~gi 275 (287)
.. ....|+.+ ..+.++++.++++|+
T Consensus 84 ~~~~~~~~P~~W~~~~~~~~~~~~~~a~~~Gl 115 (240)
T PRK10188 84 KPENFSQGHLMWNDDLFSEAQALWDAARAHGL 115 (240)
T ss_pred HHHhcCCCCeeCCccccchHHHHHHHHHHcCC
Confidence 11 11222222 234589999999886
No 256
>PRK13776 formimidoylglutamase; Provisional
Probab=24.13 E-value=3e+02 Score=25.39 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCH
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDT 235 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~ 235 (287)
..|+++.++.+.+.+++..+.|..++|
T Consensus 269 ~~e~~~il~~l~~~~~vvg~DvvEv~P 295 (318)
T PRK13776 269 LWVIEPLVKRIIASGKLRLADIAELNP 295 (318)
T ss_pred HHHHHHHHHHHHccCCEEEEEEEEECC
Confidence 667777777777777777777766554
No 257
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.12 E-value=5.2e+02 Score=25.47 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHHHcCCCeEE
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 250 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~~~~~l~~~~~~~~~~~~ 250 (287)
.++.+.-.+-++ .|.++|+|+|++-+ |.... +-++.+..+.+.+ ..+-.+++......++.+.+.+.+...
T Consensus 20 ~~s~e~K~~ia~-~L~~~Gv~~IE~G~---p~~~~----~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~~~v~ 91 (488)
T PRK09389 20 SLTPEEKLEIAR-KLDELGVDVIEAGS---AITSE----GEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDVDSVH 91 (488)
T ss_pred CcCHHHHHHHHH-HHHHcCCCEEEEeC---CcCCH----HHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCcCEEE
Confidence 455555554444 59999999998863 32211 1234445554444 344455555567778888887755444
Q ss_pred EeecCCccC------CCch------HHHHHHHHHcCCeEE
Q 023076 251 NQVQHSVVD------MRPQ------QKMAELCQLTGVKLI 278 (287)
Q Consensus 251 ~Q~~~n~~~------~~~~------~~ll~~~~~~gi~vi 278 (287)
+-+..|.++ ...+ .+.+++|+++|..+.
T Consensus 92 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~ 131 (488)
T PRK09389 92 LVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVE 131 (488)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 444444331 1111 156788889987654
No 258
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=24.10 E-value=2.8e+02 Score=24.25 Aligned_cols=80 Identities=16% Similarity=0.256 Sum_probs=52.8
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHcCCCeEEEeecCCccCCC
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILENGIPVVSNQVQHSVVDMR 261 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~ 261 (287)
-+.|-.=|.+-|.+= + ..+.-.|+++.+.+.+.+ -.||..+ -++++++++++.|-.|. .+| .
T Consensus 31 a~Ali~gGi~~IEIT---l---~sp~a~e~I~~l~~~~p~---~lIGAGTVL~~~q~~~a~~aGa~fi-----VsP---~ 93 (211)
T COG0800 31 AKALIEGGIPAIEIT---L---RTPAALEAIRALAKEFPE---ALIGAGTVLNPEQARQAIAAGAQFI-----VSP---G 93 (211)
T ss_pred HHHHHHcCCCeEEEe---c---CCCCHHHHHHHHHHhCcc---cEEccccccCHHHHHHHHHcCCCEE-----ECC---C
Confidence 344455576655543 1 123356677776666662 2477766 48999999999885443 444 4
Q ss_pred chHHHHHHHHHcCCeEEE
Q 023076 262 PQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 262 ~~~~ll~~~~~~gi~via 279 (287)
...++++.|.++||.++.
T Consensus 94 ~~~ev~~~a~~~~ip~~P 111 (211)
T COG0800 94 LNPEVAKAANRYGIPYIP 111 (211)
T ss_pred CCHHHHHHHHhCCCcccC
Confidence 566999999999998763
No 259
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=24.05 E-value=6.1e+02 Score=23.83 Aligned_cols=77 Identities=10% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEe
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 252 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q 252 (287)
.+.+.....+-+-|+..|+|||++-.-++... .. +.. ...+++++.=.+--+++..++++..+++++.| ..+.+.
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~-~~~--~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G-~~D~V~ 319 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EP-YSD--AFREKVRARFHGVIIGAGAYTAEKAETLIGKG-LIDAVA 319 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCC-cc-ccH--HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC-CCCEEE
Confidence 45554333455566777888888754222111 11 111 11133343322334455567899999998876 244444
Q ss_pred ec
Q 023076 253 VQ 254 (287)
Q Consensus 253 ~~ 254 (287)
+-
T Consensus 320 ~g 321 (362)
T PRK10605 320 FG 321 (362)
T ss_pred EC
Confidence 33
No 260
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=23.99 E-value=5.7e+02 Score=23.53 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHH-cCCCEEecCCCCCC----cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYAD-AGLTTFDMADHYGP----AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESI 182 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~-~Gin~fDTA~~YG~----sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~l 182 (287)
...++..+++++.-+ .|++.+--+- |. .+..+.+.+.....- .....+.+.||.. ...+..+.+.+
T Consensus 125 ~~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll~~l~~i---~~~~~iri~tr~~----~~~p~rit~el 195 (321)
T TIGR03821 125 PNKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLLNLLEQI---PHLKRLRIHTRLP----VVIPDRITSGL 195 (321)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHHHHHHhC---CCCcEEEEecCcc----eeeHHHhhHHH
Confidence 344566666665553 3777654332 32 333345555443221 1122456677642 23445666666
Q ss_pred HHHHHHcCCCccceE-EeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec-------CCCHHHHHHHHH
Q 023076 183 DVSRRRMDVPCLDML-QFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILE 243 (287)
Q Consensus 183 e~SL~rLg~dyiDl~-~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS-------n~~~~~l~~~~~ 243 (287)
-+.|++.|.+ .+ .+|-..+.. -.+++.++++.|++.|.. +++. |-+.+.+.++.+
T Consensus 196 ~~~L~~~~~~---~~~~~h~dh~~E-i~d~~~~ai~~L~~~Gi~--v~~qtvllkgiNDn~~~l~~L~~ 258 (321)
T TIGR03821 196 CDLLANSRLQ---TVLVVHINHANE-IDAEVADALAKLRNAGIT--LLNQSVLLRGVNDNADTLAALSE 258 (321)
T ss_pred HHHHHhcCCc---EEEEeeCCChHh-CcHHHHHHHHHHHHcCCE--EEecceeeCCCCCCHHHHHHHHH
Confidence 6677776644 44 357533322 246788999999999963 3322 336777777654
No 261
>PRK10060 RNase II stability modulator; Provisional
Probab=23.86 E-value=7.8e+02 Score=25.01 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCC-CCcHHHHHHHHHHHHHcCCccEEEecCCC--HHHHHHHHHcCCCeEEEe
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYLDALNHLTDLKEEGKIKTVALTNFD--TERLRIILENGIPVVSNQ 252 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~-~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~--~~~l~~~~~~~~~~~~~Q 252 (287)
..+...+.+.|++.+.+. +.+.+--.+.. ..+.+.+.+.+.+|++.|- .|.+.+|. ...+..+.. ++++.+-
T Consensus 507 ~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~~--l~~d~iK 581 (663)
T PRK10060 507 QTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLAR--FPIDAIK 581 (663)
T ss_pred CcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHh--CCCCEEE
Confidence 456777888888888653 33434332221 1235678888999999997 67777764 344555543 4677776
Q ss_pred ecCCccCC--------CchHHHHHHHHHcCCeEEEc
Q 023076 253 VQHSVVDM--------RPQQKMAELCQLTGVKLITS 280 (287)
Q Consensus 253 ~~~n~~~~--------~~~~~ll~~~~~~gi~via~ 280 (287)
+.-+++.. ..-..++..|++.|+.+||=
T Consensus 582 iD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 582 LDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred ECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 66544421 12236889999999999874
No 262
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=23.82 E-value=6e+02 Score=23.73 Aligned_cols=138 Identities=14% Similarity=0.173 Sum_probs=79.9
Q ss_pred CceeeccccCCCCCC-----CCCHHHHHHHHHHHHHcC---CCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEec
Q 023076 92 CRVLNGMWQTSGGWG-----RIDRDDAVDAMLRYADAG---LTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGL 163 (287)
Q Consensus 92 s~lglGt~~~~~~~~-----~~~~~~a~~~l~~A~~~G---in~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~ 163 (287)
..+|-=|.++-. |+ ..+.++..+++....+.- +-.+|..+..+.-...+-+.+. +.. -+.+.
T Consensus 28 ~~~C~RC~~l~h-y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~----~~p-----iilV~ 97 (360)
T TIGR03597 28 EVYCQRCFRLKH-YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG----GNP-----VLLVG 97 (360)
T ss_pred Ceeecchhhhhc-cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC----CCC-----EEEEE
Confidence 456666666532 22 245666777666655321 3355765544431111222221 211 45678
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 023076 164 TKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (287)
Q Consensus 164 tK~~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (287)
+|..-.+...+.+.+.+-+++.++.+|....|++.+-.-. ...+++.++.+.++.+.+.|--+|.+|..-..+-..
T Consensus 98 NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~--g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStliN~ 173 (360)
T TIGR03597 98 NKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKK--GNGIDELLDKIKKARNKKDVYVVGVTNVGKSSLINK 173 (360)
T ss_pred EchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCC--CCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHH
Confidence 8864323344566677667667777876545666654332 234888998888887767888899999877654443
No 263
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=23.73 E-value=3.2e+02 Score=23.11 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=39.5
Q ss_pred HHHHcCCCc----cceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 023076 185 SRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 244 (287)
Q Consensus 185 SL~rLg~dy----iDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~ 244 (287)
.|++.|+.- +|==++-|.+++. -+|..+.+++++++| ++-+=+||.+..++..+.+.
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~--tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~ 82 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDA--TPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK 82 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCC--CHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh
Confidence 455666442 2334555554433 468888999999999 56677899999998887663
No 264
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.62 E-value=7.1e+02 Score=24.47 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHH----cCCccEEEec--CCCHHHHHHHHHcC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVALT--NFDTERLRIILENG 245 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~----~G~Ir~iGvS--n~~~~~l~~~~~~~ 245 (287)
..+++.|.+.++. +...|...+-|. -.-++....++-..+.++.+++ .|.++.|+|+ ..+.++++++.+.|
T Consensus 114 ~Ls~EEI~~ea~~-~~~~G~~~i~Lv--sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 114 KLTQEEIREEVKA-LEDMGHKRLALV--AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred ECCHHHHHHHHHH-HHHCCCCEEEEE--eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 3578889888875 577887766553 2222222236666666676665 5777777764 45788999998888
Q ss_pred CC-eEEEeecCCcc-----CC-----CchH--HHHHHHHHcCCeEE
Q 023076 246 IP-VVSNQVQHSVV-----DM-----RPQQ--KMAELCQLTGVKLI 278 (287)
Q Consensus 246 ~~-~~~~Q~~~n~~-----~~-----~~~~--~ll~~~~~~gi~vi 278 (287)
+. ..++|--||.- ++ ..+. +.++.+.+.|+.-+
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V 236 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV 236 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 54 56666666531 11 1222 67888888888633
No 265
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=23.57 E-value=2.2e+02 Score=27.16 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCC-ce-EEEEEeccccCCCCCCCCHHHHHHHHHHHHH
Q 023076 110 RDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPP-EF-LDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (287)
Q Consensus 110 ~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~-~~-~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (287)
..+..++++..+|.|+- ...|+ ++++ -+++.++-.+|-. .+ -..++.+ ..|...+...++
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~-~~~~-~~ai~~w~~~r~~~~i~~e~i~~~------------p~VVpgi~~~I~ 101 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYG-SDEL-YAAIAHWFKQRHQWEIKPEWIVFV------------PGVVPGISLAIR 101 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCC-CHHH-HHHHHHHHHHhcCCCCCcceEEEc------------CcchHhHHHHHH
Confidence 36788899999999953 22233 3333 3444443222210 00 0111111 123444555555
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC-ccEE----EecCC--CHHHHHHHHHcC-CCeEEEeecCCccC
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTV----ALTNF--DTERLRIILENG-IPVVSNQVQHSVVD 259 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~-Ir~i----GvSn~--~~~~l~~~~~~~-~~~~~~Q~~~n~~~ 259 (287)
.| |+.=|=+.++.|-.. + +..+. +..|+ +-.. +=.-| +.++++++...+ ++.-+.=++.||.=
T Consensus 102 ~~-T~~gd~Vvi~tPvY~-P-F~~~i------~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~G 172 (388)
T COG1168 102 AL-TKPGDGVVIQTPVYP-P-FYNAI------KLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTG 172 (388)
T ss_pred Hh-CcCCCeeEecCCCch-H-HHHHH------hhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCC
Confidence 55 344577777776432 1 22222 11111 0000 11112 556677666543 34444444566643
Q ss_pred CCc----hHHHHHHHHHcCCeEEE
Q 023076 260 MRP----QQKMAELCQLTGVKLIT 279 (287)
Q Consensus 260 ~~~----~~~ll~~~~~~gi~via 279 (287)
+-. ...+.+.|++|||.||+
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VIS 196 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVIS 196 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEe
Confidence 211 12677888888888875
No 266
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=23.46 E-value=2.5e+02 Score=26.34 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=48.9
Q ss_pred HHHHHHcCCCccceEEeecCCCCCC---cHHHHHHHHHHHH-H------cCCccEEEecCCCHH---HHHHHHHc-CCCe
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYSNP---GYLDALNHLTDLK-E------EGKIKTVALTNFDTE---RLRIILEN-GIPV 248 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~---~~~e~~~aL~~l~-~------~G~Ir~iGvSn~~~~---~l~~~~~~-~~~~ 248 (287)
++.-++.+. .++.+|.+..... +.+.++.+|-+.. + ++.|--||.++.... .+.++++. |+++
T Consensus 98 ~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v 174 (398)
T PF00148_consen 98 RELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEV 174 (398)
T ss_dssp HHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEE
T ss_pred HHhhcccCC---cEEEEECCCccCCccchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCce
Confidence 333344543 7888888766322 2445666555544 2 367778899877643 44455542 4322
Q ss_pred EEEeec--------------CCccCCCc-hHHHHHHHHHc-CCeEEE-cccCC
Q 023076 249 VSNQVQ--------------HSVVDMRP-QQKMAELCQLT-GVKLIT-SLPFL 284 (287)
Q Consensus 249 ~~~Q~~--------------~n~~~~~~-~~~ll~~~~~~-gi~via-~spl~ 284 (287)
...-.. +|++-... .....++.+++ |++++. -.|++
T Consensus 175 ~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~G 227 (398)
T PF00148_consen 175 NAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLEERFGIPYLYFPSPYG 227 (398)
T ss_dssp EEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-EEEEEC-SBS
T ss_pred EEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHHHHhCCCeeecccccc
Confidence 222111 23322222 22356666554 999887 45543
No 267
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.39 E-value=4.9e+02 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHY 134 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~Y 134 (287)
.++++..++.+.+.+.|..|+=|+.-|
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 455667777777778888888777766
No 268
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=23.39 E-value=5.2e+02 Score=22.84 Aligned_cols=114 Identities=10% Similarity=0.029 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCC-C---CcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHY-G---PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~Y-G---~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (287)
+.++..+..+.+.+.|..+++-=-.| . +.+. +...++.....-. .+-.-+.+.++.-...+..+.+.-.+ +-+
T Consensus 26 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~-~~~~~~~l~~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~-ll~ 102 (253)
T PRK02412 26 TLEEVLAEALAISKYDADIIEWRADFLEKISDVES-VLAAAPAIREKFA-GKPLLFTFRTAKEGGEIALSDEEYLA-LIK 102 (253)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHH-HHHHHHHHHHhcC-CCcEEEEECChhhCCCCCCCHHHHHH-HHH
Confidence 45666666666677787766432222 1 1233 2333332211100 11111223344322222334333333 334
Q ss_pred HHHHcC-CCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCC
Q 023076 185 SRRRMD-VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD 234 (287)
Q Consensus 185 SL~rLg-~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~ 234 (287)
.+-+++ .||||+=+-. ..+.++.+.+..+++.++-|+ |.|+
T Consensus 103 ~~~~~~~~d~vDiEl~~--------~~~~~~~l~~~~~~~~~kvI~-S~H~ 144 (253)
T PRK02412 103 AVIKSGLPDYIDVELFS--------GKDVVKEMVAFAHEHGVKVVL-SYHD 144 (253)
T ss_pred HHHhcCCCCEEEEeccC--------ChHHHHHHHHHHHHcCCEEEE-eeCC
Confidence 455778 8999984321 123445555555567778777 7663
No 269
>PRK12928 lipoyl synthase; Provisional
Probab=23.37 E-value=5.7e+02 Score=23.25 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEe-c-CC---CHHHHHHHHHcC
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVAL-T-NF---DTERLRIILENG 245 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGv-S-n~---~~~~l~~~~~~~ 245 (287)
..+++.+.+.++ .+.++|..++-+.-.+..|..+.+.+...+.++.+++.. -+ .|.+ + .+ ..+.+.++.++|
T Consensus 86 ~~~~eei~~~a~-~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 86 PLDPDEPERVAE-AVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred CCCHHHHHHHHH-HHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHcC
Confidence 457778877776 577778877777666653322111233334445555542 22 2222 1 22 245566666654
No 270
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.34 E-value=6.7e+02 Score=24.06 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=13.2
Q ss_pred HHHHHHHH-cCCeEEEcc-cCC
Q 023076 265 KMAELCQL-TGVKLITSL-PFL 284 (287)
Q Consensus 265 ~ll~~~~~-~gi~via~s-pl~ 284 (287)
..-++.++ .||+++... |++
T Consensus 239 ~~a~~Le~~~giP~~~~~~p~G 260 (435)
T cd01974 239 KTAKFLEKKCKVPVETLNMPIG 260 (435)
T ss_pred HHHHHHHHHhCCCeeecCCCcC
Confidence 45556554 799888775 654
No 271
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=23.30 E-value=5.9e+02 Score=23.44 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCeEEEcccCCCC
Q 023076 265 KMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 265 ~ll~~~~~~gi~via~spl~~G 286 (287)
+-++.+++.|+.+...+++.+|
T Consensus 224 ~ai~~L~~~Gi~v~~qtvllkg 245 (321)
T TIGR03821 224 DALAKLRNAGITLLNQSVLLRG 245 (321)
T ss_pred HHHHHHHHcCCEEEecceeeCC
Confidence 4445555556665555555554
No 272
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=23.11 E-value=5e+02 Score=22.49 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCH-HHHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTS-SIVRESIDVSR 186 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~-~~i~~~le~SL 186 (287)
.++++..++.+.|.+.|+.-+-..+.| -+...+.|++ . .+.+.|-.+- |....+ +.-...+++.+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~---v~~a~~~l~~---~-------~v~v~tVigF-P~G~~~~~~K~~E~~~Av 80 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY---VPLAKELLKG---T-------EVRICTVVGF-PLGASTTDVKLYETKEAI 80 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH---HHHHHHHcCC---C-------CCeEEEEeCC-CCCCCcHHHHHHHHHHHH
Confidence 567899999999999987766554443 2223344432 1 2223332221 222233 33333344443
Q ss_pred HHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHc--CC-ccEE-EecCCCHHHHHHHHHc--CCCeEEEeec--CCcc
Q 023076 187 RRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE--GK-IKTV-ALTNFDTERLRIILEN--GIPVVSNQVQ--HSVV 258 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~--G~-Ir~i-GvSn~~~~~l~~~~~~--~~~~~~~Q~~--~n~~ 258 (287)
++|.|-||+++--..-... +.+...+.+.+.++. |+ ++-| -.+-.+.+++.++.+. ....+++... |.+-
T Consensus 81 -~~GAdEiDvv~n~g~l~~g-~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~ 158 (211)
T TIGR00126 81 -KYGADEVDMVINIGALKDG-NEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAG 158 (211)
T ss_pred -HcCCCEEEeecchHhhhCC-cHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC
Confidence 5799999998654432222 266777777777765 54 2332 2222345555554431 1235666766 7643
Q ss_pred CCCchH-HHHHHHHHcCCeEEEc
Q 023076 259 DMRPQQ-KMAELCQLTGVKLITS 280 (287)
Q Consensus 259 ~~~~~~-~ll~~~~~~gi~via~ 280 (287)
.-..++ .++...-...+++-+-
T Consensus 159 gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 159 GATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred CCCHHHHHHHHHHhccCCeEEEe
Confidence 222222 3333222235665543
No 273
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.06 E-value=5.9e+02 Score=23.31 Aligned_cols=70 Identities=10% Similarity=-0.053 Sum_probs=45.6
Q ss_pred HHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCc
Q 023076 183 DVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 257 (287)
Q Consensus 183 e~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~ 257 (287)
++.|..+.-+|.|++.+..- . .+.+.+.++.+.+.|+---+|.+.|+.++++++.+...-+.++--+||+
T Consensus 69 ~~~l~~~~~~~~~~VvIDFT---~--P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 69 EAVLSSVKAEYPNLIVVDYT---L--PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred HHHHHHhhccCCCEEEEECC---C--hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 44454554457887666542 2 2456677788888898888999999999888776542124444445554
No 274
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=23.00 E-value=2.8e+02 Score=24.13 Aligned_cols=135 Identities=10% Similarity=-0.006 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCCEEecCCCCCCcHHH--HHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcCC
Q 023076 114 VDAMLRYADAGLTTFDMADHYGPAEDL--YGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMDV 191 (287)
Q Consensus 114 ~~~l~~A~~~Gin~fDTA~~YG~sE~~--lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg~ 191 (287)
.+.++.|++.|++.+--=+-+...++. +.+.++...+... ..++|. ++++-++ +.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~~~~lc~~~~----v~liIN------------d~~dlA~-----~~-- 80 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSDEEYLALAEKLRALCQKYG----VPLIIN------------DRVDLAL-----AV-- 80 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCChHHHHHHHHHHHHHHHHhC----CeEEec------------CcHHHHH-----hC--
Confidence 689999999999887433333333332 2334444433321 122221 1121111 23
Q ss_pred CccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccC----CCchHHHH
Q 023076 192 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD----MRPQQKMA 267 (287)
Q Consensus 192 dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~----~~~~~~ll 267 (287)
+..-+|-...+.+ ..+ ..++...++ -||+|+|+.++++++.+.+.....+=--|.--. ....-+.+
T Consensus 81 ---~AdGVHlGq~D~~-~~~----ar~~~~~~~--iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l 150 (211)
T COG0352 81 ---GADGVHLGQDDMP-LAE----ARELLGPGL--IIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGL 150 (211)
T ss_pred ---CCCEEEcCCcccc-hHH----HHHhcCCCC--EEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHH
Confidence 3344565433222 222 244555555 699999999999999876532222111111100 11222666
Q ss_pred HHHHHcC-CeEEEcc
Q 023076 268 ELCQLTG-VKLITSL 281 (287)
Q Consensus 268 ~~~~~~g-i~via~s 281 (287)
.+.++.. |++++..
T Consensus 151 ~~~~~~~~iP~vAIG 165 (211)
T COG0352 151 REIRELVNIPVVAIG 165 (211)
T ss_pred HHHHHhCCCCEEEEc
Confidence 6776666 8888754
No 275
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.97 E-value=6.8e+02 Score=24.04 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHcCCccEEE
Q 023076 211 DALNHLTDLKEEGKIKTVA 229 (287)
Q Consensus 211 e~~~aL~~l~~~G~Ir~iG 229 (287)
.+.+.++.+++.|.--+|+
T Consensus 90 ~l~eLl~~lk~~gi~taI~ 108 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLG 108 (404)
T ss_pred HHHHHHHHHHhCCCCEEEe
Confidence 3444444444444433444
No 276
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.92 E-value=1.7e+02 Score=24.71 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=26.4
Q ss_pred ccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 023076 193 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 241 (287)
Q Consensus 193 yiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~ 241 (287)
.+|.++||..++ . +..+.+.+......++.+|++++...++.+.
T Consensus 73 ~~d~Vqlhg~e~----~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 73 GLDVVQLHGDES----P-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred CCCEEEECCCCC----H-HHHHHHHhhcCCcEEEEEecCChhhHHHhhh
Confidence 368899997541 1 2333333333346889999998766554333
No 277
>PLN02923 xylose isomerase
Probab=22.70 E-value=2.8e+02 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=28.2
Q ss_pred HHHHHcCCCccceEEeecCCCCCCc---------HHHHHHHHHHH-HHcCCccEEEecC
Q 023076 184 VSRRRMDVPCLDMLQFHWWDYSNPG---------YLDALNHLTDL-KEEGKIKTVALTN 232 (287)
Q Consensus 184 ~SL~rLg~dyiDl~~lH~p~~~~~~---------~~e~~~aL~~l-~~~G~Ir~iGvSn 232 (287)
+-++.||.+| |.+|+.|....+ ++++.+.+.+. ++.|..--+|.+|
T Consensus 130 Ef~~kLG~~y---~cFHD~Dl~Peg~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaN 185 (478)
T PLN02923 130 EFLKKLGVDR---WCFHDRDIAPDGKTLEESNANLDEVVALAKELQEGTKIRPLWGTAQ 185 (478)
T ss_pred HHHHHhCCCe---EccCccccCCCCCCHHHHHhhHHHHHHHHHHHhHhhCceeeeeccc
Confidence 4678888766 788986532211 34566666554 4556655677766
No 278
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.69 E-value=1.5e+02 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.0
Q ss_pred CCchHHHHHHHHHcCCeEEEcc
Q 023076 260 MRPQQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 260 ~~~~~~ll~~~~~~gi~via~s 281 (287)
...|..+++.+++.|+++.-|+
T Consensus 46 K~~E~~L~~~A~~lg~pl~~~~ 67 (126)
T PRK07027 46 KADEAGLLALCARHGWPLRAFS 67 (126)
T ss_pred hcCCHHHHHHHHHhCCCeEEeC
Confidence 3456678888888888877764
No 279
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=22.67 E-value=40 Score=32.96 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred CCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCe
Q 023076 223 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (287)
Q Consensus 223 G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~ 276 (287)
+.+|.+|+..++.+.+.++....-.-+..+....++-...+.++++.+++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 567899999999988888765321123333343443333455888888888874
No 280
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=22.66 E-value=4.8e+02 Score=22.30 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHc--CCCeEEE----------------------eecCCccC---CCchHHHHHH
Q 023076 217 TDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN----------------------QVQHSVVD---MRPQQKMAEL 269 (287)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--~~~~~~~----------------------Q~~~n~~~---~~~~~~ll~~ 269 (287)
+.+++.|....+=+++|+++.+..+.+. .++.... ...+..++ .....++++.
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRL 189 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHH
Confidence 3444556667778888888888777652 1222111 11111110 0012588999
Q ss_pred HHHcCCeEEEccc
Q 023076 270 CQLTGVKLITSLP 282 (287)
Q Consensus 270 ~~~~gi~via~sp 282 (287)
++++|+.+.+|..
T Consensus 190 ~~~~G~~v~~WTv 202 (226)
T cd08568 190 LRKLGLKIVLWTV 202 (226)
T ss_pred HHHCCCEEEEEcC
Confidence 9999999999953
No 281
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.66 E-value=6.3e+02 Score=23.53 Aligned_cols=130 Identities=15% Similarity=0.084 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhcc---------------------CCCceEEEEEecccc
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE---------------------RPPEFLDKVRGLTKW 166 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~---------------------r~~~~~~~v~i~tK~ 166 (287)
.+.+.-..+.+++-+.|+.+|=|...- +-+ +.+.+.+.+ .+ .+.++|-
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~----~sv-d~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gk-----PvilStG- 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDL----ESA-DFLEDLGVPRFKIPSGEITNAPLLKKIARFGK-----PVILSTG- 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCH----HHH-HHHHhcCCCEEEECcccccCHHHHHHHHhcCC-----cEEEECC-
Confidence 567888889999999999999765421 111 222222111 11 1222221
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCccceEEeecCCC-CCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH--HH
Q 023076 167 VPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII--LE 243 (287)
Q Consensus 167 ~~~~~~~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~-~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~--~~ 243 (287)
-.+.+.+..+++...+ -|.+.-|+.++|+... ..+..+--+.++..|++.=. .-||+|.|+....... +.
T Consensus 142 -----matl~Ei~~Av~~i~~-~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva 214 (329)
T TIGR03569 142 -----MATLEEIEAAVGVLRD-AGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA 214 (329)
T ss_pred -----CCCHHHHHHHHHHHHH-cCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH
Confidence 2367888888887653 3432225899998642 11111223445555554432 3699999986543332 23
Q ss_pred cCCCeEEEeecCCc
Q 023076 244 NGIPVVSNQVQHSV 257 (287)
Q Consensus 244 ~~~~~~~~Q~~~n~ 257 (287)
.|. .++.-.+.+
T Consensus 215 lGA--~iIEkH~tl 226 (329)
T TIGR03569 215 LGA--TVIEKHFTL 226 (329)
T ss_pred cCC--CEEEeCCCh
Confidence 343 255555555
No 282
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.64 E-value=4.6e+02 Score=22.96 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~a 144 (287)
+.+++.++.+..++.|++.+.-...-.++.+.+.+.
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l 60 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAEL 60 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHH
Confidence 679999999999999999998876544455555443
No 283
>smart00642 Aamy Alpha-amylase domain.
Probab=22.52 E-value=1.2e+02 Score=25.18 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCeEEEc
Q 023076 264 QKMAELCQLTGVKLITS 280 (287)
Q Consensus 264 ~~ll~~~~~~gi~via~ 280 (287)
+++++.|+++||.|+.=
T Consensus 73 ~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 73 KELVDAAHARGIKVILD 89 (166)
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 48999999999998853
No 284
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=22.46 E-value=6.5e+02 Score=23.61 Aligned_cols=117 Identities=21% Similarity=0.170 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEecCCCCC--CcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAG-LTTFDMADHYG--PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDV 184 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~G-in~fDTA~~YG--~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~ 184 (287)
.+.++..+.-+.|-+.| .+|...|..+| ..=..+-++++....+ . .+.+.- +....+.++. +
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~----~--~le~c~----slG~l~~eq~-----~ 148 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEE----L--GLEVCA----SLGMLTEEQA-----E 148 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHh----c--CcHHhh----ccCCCCHHHH-----H
Confidence 56677777788888999 88888888886 2111234444443211 0 111111 1112344443 3
Q ss_pred HHHHcCCCccceEEeecCCCC---------CCcHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHHH
Q 023076 185 SRRRMDVPCLDMLQFHWWDYS---------NPGYLDALNHLTDLKEEGKIKT----VALTNFDTERLRIILE 243 (287)
Q Consensus 185 SL~rLg~dyiDl~~lH~p~~~---------~~~~~e~~~aL~~l~~~G~Ir~----iGvSn~~~~~l~~~~~ 243 (287)
-|+.-|+|+ +-|+.+.. ...+++-++.++.+++.|.=-. +|+.+-..++++.+..
T Consensus 149 ~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~ 216 (335)
T COG0502 149 KLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLE 216 (335)
T ss_pred HHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHH
Confidence 456677774 45654331 1238899999999999997554 4455544555555543
No 285
>PTZ00445 p36-lilke protein; Provisional
Probab=22.42 E-value=4e+02 Score=23.43 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHcCCCEE-----ecCC-------CCCCcHHHHHHHHhhhhccCCCceEEEEE-eccccCCCCCCCCHH
Q 023076 110 RDDAVDAMLRYADAGLTTF-----DMAD-------HYGPAEDLYGIFINRVRRERPPEFLDKVR-GLTKWVPPPVKMTSS 176 (287)
Q Consensus 110 ~~~a~~~l~~A~~~Gin~f-----DTA~-------~YG~sE~~lG~al~~~~r~r~~~~~~~v~-i~tK~~~~~~~~~~~ 176 (287)
.++...++.+..+.||..+ |-.. .|-..++++-.+|+...-+ -....++ ...++|..|..+.+.
T Consensus 77 tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~---~~i~~~~~yyp~~w~~p~~y~~~ 153 (219)
T PTZ00445 77 TPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCD---FKIKKVYAYYPKFWQEPSDYRPL 153 (219)
T ss_pred CHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCcc---ceeeeeeeeCCcccCChhhhhhh
Confidence 3567778888889998854 2221 1112466778888854332 2222333 345555554344333
Q ss_pred HH------HH--HHHHHHHHcCCCccceEEee
Q 023076 177 IV------RE--SIDVSRRRMDVPCLDMLQFH 200 (287)
Q Consensus 177 ~i------~~--~le~SL~rLg~dyiDl~~lH 200 (287)
.+ .+ .+++.+++.|++.=+++++-
T Consensus 154 gl~KPdp~iK~yHle~ll~~~gl~peE~LFID 185 (219)
T PTZ00445 154 GLDAPMPLDKSYHLKQVCSDFNVNPDEILFID 185 (219)
T ss_pred cccCCCccchHHHHHHHHHHcCCCHHHeEeec
Confidence 33 22 24899999999998998885
No 286
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=22.33 E-value=5.9e+02 Score=23.08 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=11.3
Q ss_pred HHHHHHHHHcCCccEEE
Q 023076 213 LNHLTDLKEEGKIKTVA 229 (287)
Q Consensus 213 ~~aL~~l~~~G~Ir~iG 229 (287)
-+.|++|++.|.-+..|
T Consensus 107 ~e~l~~LkeAGl~~i~~ 123 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPG 123 (309)
T ss_pred HHHHHHHHHcCCCcCCC
Confidence 35567888888765533
No 287
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=22.27 E-value=6.3e+02 Score=23.39 Aligned_cols=30 Identities=10% Similarity=-0.044 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeec
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW 201 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~ 201 (287)
..+.+.++++..++.+-|=-.-+|++++.-
T Consensus 135 ~v~fd~l~~ay~eq~~~Li~gG~D~iLiET 164 (311)
T COG0646 135 AVTFDELVEAYREQVEGLIDGGADLILIET 164 (311)
T ss_pred cccHHHHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 467899999999999998777789999875
No 288
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=22.02 E-value=9.3e+02 Score=25.25 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHHHcC
Q 023076 111 DDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRRRMD 190 (287)
Q Consensus 111 ~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~rLg 190 (287)
+-+.++++.+-+.|++.+ ..|...++. . +.+...+ +-++..|..+ |-...-++++..+--.
T Consensus 43 EIaIRvFRa~tEL~~~tv---AiYseqD~~--s-MHRqKAD-------EaY~iGk~l~------PV~AYL~ideii~iak 103 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTV---AIYSEQDRL--S-MHRQKAD-------EAYLIGKGLP------PVGAYLAIDEIISIAK 103 (1176)
T ss_pred cchhHHHHHHhhhcceEE---EEEeccchh--h-hhhhccc-------cceecccCCC------chhhhhhHHHHHHHHH
Confidence 678899999999999866 467543322 1 2222222 3344455332 2222223333333333
Q ss_pred CCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH----------HHHcCCCeEEEeecCCccCC
Q 023076 191 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRI----------ILENGIPVVSNQVQHSVVDM 260 (287)
Q Consensus 191 ~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~----------~~~~~~~~~~~Q~~~n~~~~ 260 (287)
-..+|.+ | |...- +.|--+.-+...++| |+.||=| ++.+.. +++.|+|+. +-.+---
T Consensus 104 ~~~vdav--H-PGYGF--LSErsdFA~av~~AG-i~fiGPs---peVi~~mGDKv~AR~~Ai~agVpvV----PGTpgPi 170 (1176)
T KOG0369|consen 104 KHNVDAV--H-PGYGF--LSERSDFAQAVQDAG-IRFIGPS---PEVIDSMGDKVAARAIAIEAGVPVV----PGTPGPI 170 (1176)
T ss_pred HcCCCee--c-CCccc--cccchHHHHHHHhcC-ceEeCCC---HHHHHHhhhHHHHHHHHHHcCCCcc----CCCCCCc
Confidence 3345554 5 22211 112222224455666 7899976 333322 234554332 1111111
Q ss_pred CchHHHHHHHHHcCCeEEEcccCCCC
Q 023076 261 RPQQKMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 261 ~~~~~ll~~~~~~gi~via~spl~~G 286 (287)
..-++-+++|++.|.++|--..+++|
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccCC
Confidence 23348899999999999988888876
No 289
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=22.01 E-value=4.9e+02 Score=24.89 Aligned_cols=134 Identities=11% Similarity=0.064 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCC---ceEEEEEeccccCCC--CCCCCHHHHHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPP---EFLDKVRGLTKWVPP--PVKMTSSIVRESID 183 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~---~~~~~v~i~tK~~~~--~~~~~~~~i~~~le 183 (287)
+.+....+-+.-.+.|.+-|=-.-+ -.+-+.+-++++... +... ..+.-+.+-.-+... .....+++++.--.
T Consensus 72 ~~~~l~~i~~~~~~~GtTsfLpT~i-T~~~e~i~~al~~~~-e~~~~~ga~ilGiHLEGP~ls~~kkGAh~~~~ir~~~~ 149 (380)
T COG1820 72 SVETLETMAEAHLRHGTTSFLPTLI-TASLEKIKAALRAIR-EAIAKGGAQILGIHLEGPFLSPEKKGAHNPEYIRPPDP 149 (380)
T ss_pred CHHHHHHHHHHhhhcCeeeeeeecc-cCCHHHHHHHHHHHH-HHHhccCCceEEEEeecCccCHhhccCCCHHHhCCCCH
Confidence 3344555555556889886632222 233444678887642 2110 011111111111110 12345666654333
Q ss_pred HHHHHcCCCccc-eEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 023076 184 VSRRRMDVPCLD-MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (287)
Q Consensus 184 ~SL~rLg~dyiD-l~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~ 248 (287)
+-++.+-- --+ ++.+=-.-|+.+ +..+....+++.|.|-++|=||-+.++..++.+.|...
T Consensus 150 ~~~~~~~~-~a~g~i~~vTlAPE~~---~~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~Ga~~ 211 (380)
T COG1820 150 EELEQLIA-AADGLIKLVTLAPELD---GTKELIRLLANAGIVVSIGHSNATYEQARAAFEAGATF 211 (380)
T ss_pred HHHHHHHh-hccCceEEEEECCCCC---CCHHHHHHHHhCCeEEEecCccccHHHHHHHHHhCccE
Confidence 33333321 111 222222223332 34555678999999999999999999999999877443
No 290
>PRK13774 formimidoylglutamase; Provisional
Probab=21.97 E-value=3.2e+02 Score=25.09 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHH
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDTE 236 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~ 236 (287)
..|+++.++.+.+.+++..+.|..++|.
T Consensus 264 ~~e~l~il~~l~~~~~v~g~DivE~nP~ 291 (311)
T PRK13774 264 PHTVLELAKRIIPSDKVSSVSIAEMNPT 291 (311)
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEECCC
Confidence 6788888888888888888888776653
No 291
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.95 E-value=4.6e+02 Score=21.63 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=37.1
Q ss_pred ccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-----CchHHHHHHHHHcCCeEEEcccC
Q 023076 225 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-----RPQQKMAELCQLTGVKLITSLPF 283 (287)
Q Consensus 225 Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~-----~~~~~ll~~~~~~gi~via~spl 283 (287)
=+.||+|.|+.++++++.+.+......---|.--.. ..-..+-.+++...++++|..-+
T Consensus 95 ~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI 158 (180)
T PF02581_consen 95 DKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI 158 (180)
T ss_dssp TSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS-
T ss_pred ceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC
Confidence 347999999999999998766544443222221111 11236677888888999886544
No 292
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.91 E-value=5.7e+02 Score=23.88 Aligned_cols=76 Identities=9% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHcCC--CccceEEeecCCCCCCcHHHHHHHHHHHH-HcCC---ccEEEecCCC-HHHHHHHHHc
Q 023076 172 KMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLK-EEGK---IKTVALTNFD-TERLRIILEN 244 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~--dyiDl~~lH~p~~~~~~~~e~~~aL~~l~-~~G~---Ir~iGvSn~~-~~~l~~~~~~ 244 (287)
..+++.+.+++......+|+ ..++-+.+-.........+.+++++..+. ..|. .+.|.+|+.. +..++++.+.
T Consensus 120 ~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~~~~i~~L~~~ 199 (343)
T PRK14468 120 NLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGIPKGIRRLAEE 199 (343)
T ss_pred CCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCChHHHHHHHHh
Confidence 56778888888776666654 34665655543332333678888888884 3453 2678888764 5567777765
Q ss_pred CCC
Q 023076 245 GIP 247 (287)
Q Consensus 245 ~~~ 247 (287)
+.+
T Consensus 200 ~l~ 202 (343)
T PRK14468 200 DLG 202 (343)
T ss_pred CcC
Confidence 543
No 293
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.91 E-value=6.6e+02 Score=23.50 Aligned_cols=62 Identities=8% Similarity=0.015 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEeec-CCC-----------CCCcHH---HHH-HHHHHHHHcCCccEEEecCCCH
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDY-----------SNPGYL---DAL-NHLTDLKEEGKIKTVALTNFDT 235 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH~-p~~-----------~~~~~~---e~~-~aL~~l~~~G~Ir~iGvSn~~~ 235 (287)
..+.+.+++.++..+ .|+.++|.+|.+.- |.. ..++.+ +.+ .+.+.|.+.|. ..+++|||..
T Consensus 166 gqt~~~~~~~l~~~~-~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAI-TLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHH-ccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-CeeeeeeeeC
Confidence 457788888888765 48888998887752 221 011111 122 34566778887 4578888863
No 294
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.79 E-value=4.9e+02 Score=22.50 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIF 144 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~a 144 (287)
.+.+++.++.+..++.|++.+.-....-+..+.|.+.
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l 60 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLI 60 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHH
Confidence 3679999999999999999999875444445555443
No 295
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.78 E-value=4.4e+02 Score=23.82 Aligned_cols=93 Identities=13% Similarity=0.088 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcC-----CCccceEEeecCCCCCCcHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHHHcCC
Q 023076 176 SIVRESIDVSRRRMD-----VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILENGI 246 (287)
Q Consensus 176 ~~i~~~le~SL~rLg-----~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~----Ir~iGvSn~~~~~l~~~~~~~~ 246 (287)
-.-+-.+-+.|.++| ++.|++. .....+.+++ .++.+.|. |.++ .--+.+.++.+++.+.
T Consensus 20 ~~~Kv~i~~~L~~~G~~~~~v~~IE~~-----s~~~~d~~~v----~~~~~~~~~~~~v~~~--~r~~~~die~A~~~g~ 88 (279)
T cd07947 20 VEQIVKIYDYLHELGGGSGVIRQTEFF-----LYTEKDREAV----EACLDRGYKFPEVTGW--IRANKEDLKLVKEMGL 88 (279)
T ss_pred HHHHHHHHHHHHHcCCCCCccceEEec-----CcChHHHHHH----HHHHHcCCCCCEEEEE--ecCCHHHHHHHHHcCc
Confidence 444556677788999 8888862 1111212223 33334432 3333 3345777888888765
Q ss_pred CeEEEeecCCcc------CCCch------HHHHHHHHHcCCeEEE
Q 023076 247 PVVSNQVQHSVV------DMRPQ------QKMAELCQLTGVKLIT 279 (287)
Q Consensus 247 ~~~~~Q~~~n~~------~~~~~------~~ll~~~~~~gi~via 279 (287)
+-..+-+.-|.. ++..+ .+++++++++|+.+..
T Consensus 89 ~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~ 133 (279)
T cd07947 89 KETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRC 133 (279)
T ss_pred CEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 533333333221 12222 2677889999987654
No 296
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.74 E-value=4.2e+02 Score=22.71 Aligned_cols=87 Identities=7% Similarity=0.095 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEecCC-CHHHHHHHHHcCCCeEEE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNF-DTERLRIILENGIPVVSN 251 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I-r~iGvSn~-~~~~l~~~~~~~~~~~~~ 251 (287)
+++...+.++. +-+-| +.++.+-+-.+ +..+.+++++++-.. -.||+.+. +.++++.+++.|..+.+
T Consensus 20 ~~~~~~~~~~a-~~~gG---i~~iEvt~~~~------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv- 88 (206)
T PRK09140 20 TPDEALAHVGA-LIEAG---FRAIEIPLNSP------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV- 88 (206)
T ss_pred CHHHHHHHHHH-HHHCC---CCEEEEeCCCc------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE-
Confidence 45556555543 33445 45566653221 233455666655432 46887764 67888888887754432
Q ss_pred eecCCccCCCchHHHHHHHHHcCCeEE
Q 023076 252 QVQHSVVDMRPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 252 Q~~~n~~~~~~~~~ll~~~~~~gi~vi 278 (287)
++ ..+.++.+.|++.|+.++
T Consensus 89 ----sp---~~~~~v~~~~~~~~~~~~ 108 (206)
T PRK09140 89 ----TP---NTDPEVIRRAVALGMVVM 108 (206)
T ss_pred ----CC---CCCHHHHHHHHHCCCcEE
Confidence 22 234477777777777654
No 297
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=21.72 E-value=4.6e+02 Score=26.80 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCH--HHHHHHHHcCCCeEEEeecCCccCC--------CchHHHHHHHHHcCCeEE
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLI 278 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~--~~l~~~~~~~~~~~~~Q~~~n~~~~--------~~~~~ll~~~~~~gi~vi 278 (287)
.......+..+++.|- .|++.+|.. ..+..+.. .+|+.+-+.-+++.. ..-..++..|++.||.+|
T Consensus 677 ~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~~--l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi 752 (799)
T PRK11359 677 DTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLVS--LPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV 752 (799)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHhh--CCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE
Confidence 4557778888899987 677777643 33444433 356666666444321 122378889999999998
Q ss_pred Ec
Q 023076 279 TS 280 (287)
Q Consensus 279 a~ 280 (287)
+-
T Consensus 753 a~ 754 (799)
T PRK11359 753 AE 754 (799)
T ss_pred EE
Confidence 74
No 298
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=21.71 E-value=7.5e+02 Score=24.03 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=27.7
Q ss_pred ccceEEeecCCCCCCc---HHHHHHHHHH-HHH----cCCccEEEecCC--CHHHHHHHHHc-CCCe
Q 023076 193 CLDMLQFHWWDYSNPG---YLDALNHLTD-LKE----EGKIKTVALTNF--DTERLRIILEN-GIPV 248 (287)
Q Consensus 193 yiDl~~lH~p~~~~~~---~~e~~~aL~~-l~~----~G~Ir~iGvSn~--~~~~l~~~~~~-~~~~ 248 (287)
.+.++.+|.|+..... ++.+++++-+ +.. +++|--||-.+. +.+.++++++. |+++
T Consensus 125 ~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v 191 (454)
T cd01973 125 EVHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEA 191 (454)
T ss_pred CCeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCE
Confidence 3677888887765431 3333333322 221 456777764332 23445555543 5443
No 299
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=21.68 E-value=4.6e+02 Score=24.61 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=7.7
Q ss_pred HHHHHHHHcCCeEE
Q 023076 265 KMAELCQLTGVKLI 278 (287)
Q Consensus 265 ~ll~~~~~~gi~vi 278 (287)
++.+.|+++|+.++
T Consensus 155 ~I~~la~~~gi~vi 168 (380)
T PRK06176 155 QCASVAKDHGLLTI 168 (380)
T ss_pred HHHHHHHHcCCEEE
Confidence 55555555555554
No 300
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.62 E-value=5.2e+02 Score=22.15 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHHH
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSRR 187 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL~ 187 (287)
.+.+++.++++.+++.|++.|.-...--+..+.|.+..++++.+ ..+-..| -.+.+++..+++
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~------~~iGaGT-------V~~~~~~~~a~~---- 81 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDR------ALIGAGT-------VLSPEQVDRLAD---- 81 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCC------cEEeEEe-------cCCHHHHHHHHH----
Confidence 36799999999999999999987643333444444433332211 1222223 235577766665
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCe
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 248 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~ 248 (287)
.|.+ ++|.|..+ .+.. +...+.|..-..| .+++.++.++.+.|.+.
T Consensus 82 -aGA~-----fivsp~~~----~~v~---~~~~~~~~~~~~G--~~t~~E~~~A~~~Gad~ 127 (206)
T PRK09140 82 -AGGR-----LIVTPNTD----PEVI---RRAVALGMVVMPG--VATPTEAFAALRAGAQA 127 (206)
T ss_pred -cCCC-----EEECCCCC----HHHH---HHHHHCCCcEEcc--cCCHHHHHHHHHcCCCE
Confidence 5654 45766432 2233 4455677754444 67888888888876433
No 301
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.44 E-value=4.7e+02 Score=25.70 Aligned_cols=23 Identities=9% Similarity=0.004 Sum_probs=13.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccceE
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDML 197 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~ 197 (287)
+.+...+ +-..|.++|.+.|+++
T Consensus 23 ~t~dkl~-Ia~~Ld~~Gv~~IE~~ 45 (467)
T PRK14041 23 RTEDMLP-ALEAFDRMGFYSMEVW 45 (467)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEec
Confidence 3444433 3344677788887773
No 302
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=21.34 E-value=2.7e+02 Score=23.20 Aligned_cols=76 Identities=9% Similarity=-0.060 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHHHHHHHHH
Q 023076 107 RIDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVRESIDVSR 186 (287)
Q Consensus 107 ~~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~~~le~SL 186 (287)
+..++...-++++|-+.||.+|=.|..||..-..+-+.+...-. -+.++...+-. .-+...+.+.+++-|
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lk--------vVvVthh~Gf~--e~g~~e~~~E~~~~L 79 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLK--------VVVVTHHAGFE--EKGTQEMDEEVRKEL 79 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCce--------EEEEEeecccc--cCCceecCHHHHHHH
Q ss_pred HHcCCC
Q 023076 187 RRMDVP 192 (287)
Q Consensus 187 ~rLg~d 192 (287)
+..|.+
T Consensus 80 ~erGa~ 85 (186)
T COG1751 80 KERGAK 85 (186)
T ss_pred HHcCce
No 303
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=21.19 E-value=4.2e+02 Score=24.20 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc-----CCC--eEEEeecCCccCCCchHHHHHHHHHcCCe
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-----GIP--VVSNQVQHSVVDMRPQQKMAELCQLTGVK 276 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~-----~~~--~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~ 276 (287)
+.++.+.|.+|+++|..-+|- |+-+.+.+.+..+. +.. |+.++..+.+ ....+...+++.|++
T Consensus 33 ~~~~~e~L~~L~~~Gi~lai~-S~n~~~~a~~~l~~~~~~~~~~~~f~~~~~~~~p----k~~~i~~~~~~l~i~ 102 (320)
T TIGR01686 33 HKTLQEKIKTLKKQGFLLALA-SKNDEDDAKKVFERRKDFILQAEDFDARSINWGP----KSESLRKIAKKLNLG 102 (320)
T ss_pred HHHHHHHHHHHHhCCCEEEEE-cCCCHHHHHHHHHhCccccCcHHHeeEEEEecCc----hHHHHHHHHHHhCCC
Confidence 567888899999999755554 33355556665553 322 6666555432 223677777888764
No 304
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.15 E-value=5.9e+02 Score=22.61 Aligned_cols=131 Identities=17% Similarity=0.176 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEecC---CCCC------CcHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHHHH
Q 023076 109 DRDDAVDAMLRYADAGLTTFDMA---DHYG------PAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSIVR 179 (287)
Q Consensus 109 ~~~~a~~~l~~A~~~Gin~fDTA---~~YG------~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~i~ 179 (287)
+.++..+..+.+.+.|+..||.- +... +..+.+.+.++..... + ++-+.-|..+ ..+.+.+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~----~--~~pv~vKl~~---~~~~~~~~ 179 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA----V--DIPLLVKLSP---YFDLEDIV 179 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc----c--CCCEEEEeCC---CCCHHHHH
Confidence 55788888888889999999852 2221 1234456666654322 1 2223344433 23445555
Q ss_pred HHHHHHHHHcCCCccceEEeecCCC-------------CC-----Cc---HHHHHHHHHHHHHcC--CccEEEecCC-CH
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHWWDY-------------SN-----PG---YLDALNHLTDLKEEG--KIKTVALTNF-DT 235 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~p~~-------------~~-----~~---~~e~~~aL~~l~~~G--~Ir~iGvSn~-~~ 235 (287)
+.++ .++..|.|.| .+|.-.. .. .. ..-.++.+.++++.= .+.-||.... ++
T Consensus 180 ~~a~-~l~~~Gad~i---~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~ 255 (289)
T cd02810 180 ELAK-AAERAGADGL---TAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSG 255 (289)
T ss_pred HHHH-HHHHcCCCEE---EEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCH
Confidence 4444 4667786555 4442100 00 00 112567777887764 6888888875 58
Q ss_pred HHHHHHHHcCCCeEEEeec
Q 023076 236 ERLRIILENGIPVVSNQVQ 254 (287)
Q Consensus 236 ~~l~~~~~~~~~~~~~Q~~ 254 (287)
+.+.+++..| .+.+|+-
T Consensus 256 ~da~~~l~~G--Ad~V~vg 272 (289)
T cd02810 256 EDVLEMLMAG--ASAVQVA 272 (289)
T ss_pred HHHHHHHHcC--ccHheEc
Confidence 8899988866 5555554
No 305
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.07 E-value=6.7e+02 Score=23.26 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecC
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMA 131 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA 131 (287)
.+.++..++++..-+.|+..|+..
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 355888888888889999999983
No 306
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.01 E-value=31 Score=26.21 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=5.6
Q ss_pred ccccccC
Q 023076 4 MHCHFTG 10 (287)
Q Consensus 4 ~~~~~~~ 10 (287)
.||||||
T Consensus 23 vt~hYtg 29 (108)
T KOG0544|consen 23 VTVHYTG 29 (108)
T ss_pred EEEEEEe
Confidence 5888886
No 307
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=20.99 E-value=6.1e+02 Score=23.90 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeec
Q 023076 175 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 254 (287)
Q Consensus 175 ~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~ 254 (287)
-+....++. .|++.|. |++=+--| ..+..+++.+++++=.|=-|+=--|+...+.+..+.+ .+ -+.
T Consensus 35 v~aTv~QI~-~L~~aG~---dIVRvtv~------~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g--~~--k~R 100 (361)
T COG0821 35 VEATVAQIK-ALERAGC---DIVRVTVP------DMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG--VD--KVR 100 (361)
T ss_pred HHHHHHHHH-HHHHcCC---CEEEEecC------CHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC--cc--eEE
Confidence 344444443 4667775 56655544 2456778899999988888887778877666666665 22 333
Q ss_pred CCccCCC---chHHHHHHHHHcCCeE
Q 023076 255 HSVVDMR---PQQKMAELCQLTGVKL 277 (287)
Q Consensus 255 ~n~~~~~---~~~~ll~~~~~~gi~v 277 (287)
.||-+.. .-.++++.|+++|+++
T Consensus 101 INPGNig~~~~v~~vVe~Ak~~g~pi 126 (361)
T COG0821 101 INPGNIGFKDRVREVVEAAKDKGIPI 126 (361)
T ss_pred ECCcccCcHHHHHHHHHHHHHcCCCE
Confidence 4444332 2338999999999976
No 308
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=20.96 E-value=1.4e+02 Score=27.24 Aligned_cols=47 Identities=15% Similarity=-0.053 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCCCccc--eEE-eecCCCCCCcHHHHHHHHHHHHHcCCccE
Q 023076 176 SIVRESIDVSRRRMDVPCLD--MLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKT 227 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiD--l~~-lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~ 227 (287)
+...+.+.+.+++||+++ | .++ =+.+ .-.+.+++.+++|+++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISY-DWSDEYITTEP----EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccc-cCCCCeECCCH----HHHHHHHHHHHHHHHCCCEEe
Confidence 456777889999999854 4 333 2322 125678899999999999754
No 309
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=20.80 E-value=2.2e+02 Score=21.60 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEE
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV 228 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~i 228 (287)
+..+++.|+.+. ..|.+++++.+.-.....+.+..++.+.+.| |+-+
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g-i~l~ 88 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG-VSLR 88 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC-CEEE
Confidence 344555555555 5788999888766555677788888887776 4444
No 310
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.80 E-value=5.7e+02 Score=22.33 Aligned_cols=85 Identities=9% Similarity=0.103 Sum_probs=45.5
Q ss_pred HHcCCCccceEEeecCCC--CCCcHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHHHc-CCCeEEEeecCCccCCCc
Q 023076 187 RRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTN-FDTERLRIILEN-GIPVVSNQVQHSVVDMRP 262 (287)
Q Consensus 187 ~rLg~dyiDl~~lH~p~~--~~~~~~e~~~aL~~l~~~G~Ir~iGvSn-~~~~~l~~~~~~-~~~~~~~Q~~~n~~~~~~ 262 (287)
..+|. |-+.+|..+. ....+ -|+.+.++.+.-.+.-|.-.. .+.+.+.++.+. |..-.++-.-++-- ...
T Consensus 163 ~~~g~---~~ii~~~i~~~g~~~g~--d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~-~~~ 236 (253)
T PRK02083 163 EELGA---GEILLTSMDRDGTKNGY--DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG-EIT 236 (253)
T ss_pred HHcCC---CEEEEcCCcCCCCCCCc--CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC-CCC
Confidence 45554 5567766432 11112 255556666654555555443 467888888764 53222221112111 223
Q ss_pred hHHHHHHHHHcCCeE
Q 023076 263 QQKMAELCQLTGVKL 277 (287)
Q Consensus 263 ~~~ll~~~~~~gi~v 277 (287)
..++++.|++.||.+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 237 IGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHHCCCcc
Confidence 448899999999864
No 311
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=20.75 E-value=29 Score=24.20 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhh
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVR 149 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~ 149 (287)
.+++.-.++|..++..|.+.-+.|..||-+...|.+|++...
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 366788889999999999999999999999999999999864
No 312
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=20.70 E-value=1.5e+02 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023076 176 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 225 (287)
Q Consensus 176 ~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~I 225 (287)
+...+.+++.+++||++ .|.+.-.. + ......+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~tt-~--~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRTT-S--PRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeCC-C--HHHHHHHHHHHHHHHHCCCE
Confidence 55677889999999996 58653321 1 11134577888999999998
No 313
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=20.68 E-value=6.1e+02 Score=23.41 Aligned_cols=17 Identities=0% Similarity=0.022 Sum_probs=14.9
Q ss_pred hHHHHHHHHHcCCeEEE
Q 023076 263 QQKMAELCQLTGVKLIT 279 (287)
Q Consensus 263 ~~~ll~~~~~~gi~via 279 (287)
+..++.+|.++||+|++
T Consensus 163 e~Sil~~Ayk~~VPIf~ 179 (301)
T TIGR00321 163 RSSIRYAAYKRKIPIFC 179 (301)
T ss_pred cchHHHHHHHcCCCEEC
Confidence 56899999999999875
No 314
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=20.64 E-value=2.6e+02 Score=22.23 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=28.1
Q ss_pred CHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcCCeEEEccc
Q 023076 234 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITSLP 282 (287)
Q Consensus 234 ~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~gi~via~sp 282 (287)
+++.+++.++....+.++-+---.-.+.+..++...|++.||++-.+|.
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMST 104 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccc
Confidence 4555666555322233333332222245566888888888888877764
No 315
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.62 E-value=3.3e+02 Score=19.50 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=35.3
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEecCC-CHHHHHHHHHcC
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNF-DTERLRIILENG 245 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvSn~-~~~~l~~~~~~~ 245 (287)
.++....|++++-...+... .++.++.+++.+ .++-|-+++. +.....++.+.|
T Consensus 38 ~~~~~~~d~iiid~~~~~~~----~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g 93 (112)
T PF00072_consen 38 LLKKHPPDLIIIDLELPDGD----GLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAG 93 (112)
T ss_dssp HHHHSTESEEEEESSSSSSB----HHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTT
T ss_pred HhcccCceEEEEEeeecccc----ccccccccccccccccEEEecCCCCHHHHHHHHHCC
Confidence 33444599999986544433 344456666666 7888888865 456777777766
No 316
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=20.59 E-value=7e+02 Score=23.26 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccceEEee
Q 023076 172 KMTSSIVRESIDVSRRRMDVPCLDMLQFH 200 (287)
Q Consensus 172 ~~~~~~i~~~le~SL~rLg~dyiDl~~lH 200 (287)
..+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 346677777766444 4777777777665
No 317
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.56 E-value=3.8e+02 Score=25.52 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCch-HHHHHHHHHcC-CeEEEcccCC
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITSLPFL 284 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~-~~ll~~~~~~g-i~via~spl~ 284 (287)
+..+.+-++++....-|...=+-..+.+.++++++...+...++.+-||.-.-.+ ..+.+.|+++| +.++.=..++
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 5567777776555554554444445778888887755567777888888643332 37888999998 8888654443
No 318
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=20.54 E-value=4.2e+02 Score=22.45 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=53.5
Q ss_pred HcCCCEEecCCC--------C-CCcHHHHHHHHhhhhccCCCceEEEEEeccccCCC-----CCCCCHHHHHHHHHHHHH
Q 023076 122 DAGLTTFDMADH--------Y-GPAEDLYGIFINRVRRERPPEFLDKVRGLTKWVPP-----PVKMTSSIVRESIDVSRR 187 (287)
Q Consensus 122 ~~Gin~fDTA~~--------Y-G~sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~-----~~~~~~~~i~~~le~SL~ 187 (287)
..++-++||-.. | |..+..+-..|...+ - ++.+-+.=.|+|... +..-++..+..-+++.|+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r---~-DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~ 153 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYR---F-DLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLE 153 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcc---c-ceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHH
Confidence 348999999543 3 434555555665432 2 121111111333221 123366788888999999
Q ss_pred HcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC
Q 023076 188 RMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 223 (287)
Q Consensus 188 rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G 223 (287)
+-+..|+ -|..++.... +..++++.+++..++
T Consensus 154 ~~~~~~v---~i~~~~y~eR-~~~~~~aV~ell~~~ 185 (187)
T COG3172 154 ENNIPFV---VIEGEDYLER-YLQAVEAVEELLGEK 185 (187)
T ss_pred HhCCcEE---EEcCCCHHHH-HHHHHHHHHHHHhcc
Confidence 9887764 4444443322 556888888887766
No 319
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=20.53 E-value=5.8e+02 Score=22.25 Aligned_cols=19 Identities=5% Similarity=0.218 Sum_probs=17.0
Q ss_pred hHHHHHHHHHcCCeEEEcc
Q 023076 263 QQKMAELCQLTGVKLITSL 281 (287)
Q Consensus 263 ~~~ll~~~~~~gi~via~s 281 (287)
..++++.++++|+.+.+|.
T Consensus 198 ~~~~v~~~~~~g~~v~~WT 216 (249)
T PRK09454 198 DEARVAALKAAGLRILVYT 216 (249)
T ss_pred CHHHHHHHHHCCCEEEEEe
Confidence 4589999999999999985
No 320
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.51 E-value=2.9e+02 Score=21.58 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEec
Q 023076 179 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 231 (287)
Q Consensus 179 ~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvS 231 (287)
+..+.+.|+.+...-+|.+++...+.-.....+....++.+.+.| |+-+-+.
T Consensus 51 Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~~ 102 (148)
T smart00857 51 RPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG-VRLVSVT 102 (148)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC-CEEEECc
Confidence 445566666665556788888877665544667777788888887 5555443
No 321
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=20.49 E-value=6.9e+02 Score=23.17 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcC-CccEEEec-----------CC-CHHHHH
Q 023076 173 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALT-----------NF-DTERLR 239 (287)
Q Consensus 173 ~~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G-~Ir~iGvS-----------n~-~~~~l~ 239 (287)
.+++.|.+.+++. ...|...+.+..-+.|+ .+ ++...+.++.++++. .+.-..++ .. +.+.++
T Consensus 79 l~~eeI~~~a~~~-~~~G~~~v~l~~G~~p~--~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~ 154 (351)
T TIGR03700 79 MSLEEIVARVKEA-YAPGATEVHIVGGLHPN--LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLD 154 (351)
T ss_pred CCHHHHHHHHHHH-HHCCCcEEEEecCCCCC--CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHH
Confidence 5777777777643 45777777776544443 22 555666667777765 23322211 11 234466
Q ss_pred HHHHcCCCeE---EEee-------cCCccCCCchH--HHHHHHHHcCCeEEEcccCCCC
Q 023076 240 IILENGIPVV---SNQV-------QHSVVDMRPQQ--KMAELCQLTGVKLITSLPFLVN 286 (287)
Q Consensus 240 ~~~~~~~~~~---~~Q~-------~~n~~~~~~~~--~ll~~~~~~gi~via~spl~~G 286 (287)
++.+.|..-. ..+. .+++-....++ +.++.+++.|+.+-+.--+|-|
T Consensus 155 ~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Glg 213 (351)
T TIGR03700 155 ELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLYGHI 213 (351)
T ss_pred HHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEeeCC
Confidence 6666553211 0111 01111111233 6788888888877665555443
No 322
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=20.44 E-value=4.6e+02 Score=21.11 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=37.2
Q ss_pred HHHHHcCCccEEEecCCCHHHHHHHHHc--CCCe----------------------EEEeecCCccCCCchHHHHHHHHH
Q 023076 217 TDLKEEGKIKTVALTNFDTERLRIILEN--GIPV----------------------VSNQVQHSVVDMRPQQKMAELCQL 272 (287)
Q Consensus 217 ~~l~~~G~Ir~iGvSn~~~~~l~~~~~~--~~~~----------------------~~~Q~~~n~~~~~~~~~ll~~~~~ 272 (287)
+.+++-|.-+.+=+++|+++.+..+.+. .++. +.+..++.. ....+++.+++
T Consensus 83 ~~i~~~~~~~~v~i~s~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~i~~~~~ 158 (189)
T cd08556 83 ELLREYGLEERVVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKL----LTPELVRAAHA 158 (189)
T ss_pred HHHHHcCCcCCEEEEeCCHHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEccChhh----CCHHHHHHHHH
Confidence 3344445566777777777776666542 1111 112222211 24589999999
Q ss_pred cCCeEEEccc
Q 023076 273 TGVKLITSLP 282 (287)
Q Consensus 273 ~gi~via~sp 282 (287)
+|+.+.+|..
T Consensus 159 ~g~~v~~wtv 168 (189)
T cd08556 159 AGLKVYVWTV 168 (189)
T ss_pred cCCEEEEEcC
Confidence 9999999853
No 323
>PLN02907 glutamate-tRNA ligase
Probab=20.39 E-value=4.5e+02 Score=27.40 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHcCCCccceEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHc
Q 023076 174 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 244 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiDl~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~ 244 (287)
......+++.+.|+.||.++ |-.. ...+.++.-.+..++|.++|+. + ++..+.+++++....
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~-d~~~-----~qS~r~~~y~~~a~~Li~~G~a--Y-~~~~~~~~~~~~~~~ 321 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKY-DAVT-----YTSDYFPQLMEMAEKLIKEGKA--Y-VDDTPREQMRKERMD 321 (722)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCcc-----cccccHHHHHHHHHHHHHcCCe--e-ecCCCHHHHHHHHhc
Confidence 33566788999999999987 5321 1223367778889999999985 3 477788888776543
No 324
>PF00491 Arginase: Arginase family; InterPro: IPR006035 The ureohydrolase superfamily includes arginase (3.5.3.1 from EC), agmatinase (3.5.3.11 from EC), formiminoglutamase (3.5.3.8 from EC) and proclavaminate amidinohydrolase (3.5.3.22 from EC) []. These enzymes share a 3-layer alpha-beta-alpha structure [, , ], and play important roles in arginine/agmatine metabolism, the urea cycle, histidine degradation, and other pathways. Arginase, which catalyses the conversion of arginine to urea and ornithine, is one of the five members of the urea cycle enzymes that convert ammonia to urea as the principal product of nitrogen excretion []. There are several arginase isozymes that differ in catalytic, molecular and immunological properties. Deficiency in the liver isozyme leads to argininemia, which is usually associated with hyperammonemia. Agmatinase hydrolyses agmatine to putrescine, the precursor for the biosynthesis of higher polyamines, spermidine and spermine. In addition, agmatine may play an important regulatory role in mammals. Formiminoglutamase catalyses the fourth step in histidine degradation, acting to hydrolyse N-formimidoyl-L-glutamate to L-glutamate and formamide. Proclavaminate amidinohydrolase is involved in clavulanic acid biosynthesis. Clavulanic acid acts as an inhibitor of a wide range of beta-lactamase enzymes that are used by various microorganisms to resist beta-lactam antibiotics. As a result, this enzyme improves the effectiveness of beta-lactamase antibiotics [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0046872 metal ion binding; PDB: 4DZ4_A 3SL0_A 3MMR_A 3SL1_A 2EF5_D 2EIV_K 2EF4_A 3NIO_F 3THH_A 1WVA_A ....
Probab=20.33 E-value=2.9e+02 Score=24.51 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCccceEEeec---------------CCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 023076 180 ESIDVSRRRMDVPCLDMLQFHW---------------WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTE 236 (287)
Q Consensus 180 ~~le~SL~rLg~dyiDl~~lH~---------------p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~ 236 (287)
+.+++.++.++- ..|-+++|- |.+.....+|+.+.++.+.+.++|..+.|+.+++.
T Consensus 186 ~~~~~~~~~~~~-~~~~vylsiDiDvlDp~~~pg~~~p~pgGl~~~e~~~~l~~l~~~~~vvg~di~E~~P~ 256 (277)
T PF00491_consen 186 AVLEEILEALGS-GTDPVYLSIDIDVLDPAFAPGVGTPEPGGLSPRELLQLLRALARSGKVVGLDIVEYNPD 256 (277)
T ss_dssp HHHHHHHHHHTT-STSEEEEEEEGGGBBTTTSTSBSS-BSS-B-HHHHHHHHHHHHHHSEEEEEEEE-B-GG
T ss_pred hHHHHHHHHHhc-CCCeEEEEEehhhcChhhCCCcCCCcCCCCCHHHHHHHHHHHcccCCeEEEEEEEECCC
Confidence 347777888842 345677773 12222247889999999988999999999988764
No 325
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.32 E-value=1.6e+02 Score=22.83 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEecCCCCCCcHHHHHHHHhhhhcc
Q 023076 108 IDRDDAVDAMLRYADAGLTTFDMADHYGPAEDLYGIFINRVRRE 151 (287)
Q Consensus 108 ~~~~~a~~~l~~A~~~Gin~fDTA~~YG~sE~~lG~al~~~~r~ 151 (287)
.+.+.-.+++...++.|.+.=+.|..||-++..|-.|.+.+...
T Consensus 13 ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~~~ 56 (121)
T PRK09413 13 RTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEG 56 (121)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHhhc
Confidence 46677788999999999999999999999999999999986543
No 326
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.29 E-value=2.3e+02 Score=23.65 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCCCchHHHHHHHHHcC
Q 023076 209 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTG 274 (287)
Q Consensus 209 ~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~~~~~~ll~~~~~~g 274 (287)
.+++-+.+++++++| |++|.|| .-||+.|+..|..+.+.+++.|
T Consensus 133 ~~~v~~~~~~l~~~g-v~avAV~---------------------~~fS~~np~hE~~v~eii~e~g 176 (176)
T PF05378_consen 133 EDEVREALRELKDKG-VEAVAVS---------------------LLFSYRNPEHEQRVAEIIREEG 176 (176)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEE---------------------CccCCCCHHHHHHHHHHHHhcC
Confidence 445555666666665 6666665 3345555555555556655543
No 327
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=20.28 E-value=4.9e+02 Score=26.54 Aligned_cols=63 Identities=11% Similarity=-0.037 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHcCCCccc-eEEeecCCCCCCcHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHHHcC
Q 023076 174 TSSIVRESIDVSRRRMDVPCLD-MLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENG 245 (287)
Q Consensus 174 ~~~~i~~~le~SL~rLg~dyiD-l~~lH~p~~~~~~~~e~~~aL~~l~~~G~Ir~iGvSn~~~~~l~~~~~~~ 245 (287)
......+++.+.|+.||.++=. .++ ..+.++.-.+++++|.++|+. + ++..+.+++++....|
T Consensus 99 ~~~e~~d~IleDL~WLGl~wDe~~~~------QSdr~d~y~e~a~~Li~~G~A--Y-~c~cs~eei~~~r~~g 162 (601)
T PTZ00402 99 EKEHFEQAILDDLATLGVSWDVGPTY------SSDYMDLMYEKAEELIKKGLA--Y-CDKTPREEMQKCRFDG 162 (601)
T ss_pred cCHHHHHHHHHHHHHCCCCCCCceee------ccccHHHHHHHHHHHHHcCCE--E-EecCCHHHHHHHHhCC
Confidence 3456678888999999997522 221 223366778889999999984 5 8888889887765444
No 328
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=20.28 E-value=7.3e+02 Score=23.32 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=37.6
Q ss_pred HHcCCccEEEecCCCHHHHHHHHHcCCCeEEEeecCCccCC-CchHHHHHHHHHcCCeEEE
Q 023076 220 KEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLIT 279 (287)
Q Consensus 220 ~~~G~Ir~iGvSn~~~~~l~~~~~~~~~~~~~Q~~~n~~~~-~~~~~ll~~~~~~gi~via 279 (287)
...| ++-.-+--.+.+.+++++....+..++..+.|+.-. ..-+++.+.|+++|+.++.
T Consensus 122 ~~~G-~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 122 ARFG-IETTFVDLTDLDAWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred HHcC-cEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 3445 333333334677888777544566666667776422 2345899999999998874
No 329
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.17 E-value=3.2e+02 Score=24.83 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=53.5
Q ss_pred HHHcCCCccceEEeec-CCCCCCcHHHH-----HHHHHHHHHcCCccEEEecCCCHHH-------HHHHHHcCCCeEEEe
Q 023076 186 RRRMDVPCLDMLQFHW-WDYSNPGYLDA-----LNHLTDLKEEGKIKTVALTNFDTER-------LRIILENGIPVVSNQ 252 (287)
Q Consensus 186 L~rLg~dyiDl~~lH~-p~~~~~~~~e~-----~~aL~~l~~~G~Ir~iGvSn~~~~~-------l~~~~~~~~~~~~~Q 252 (287)
++-++-.++|+..+.. ..... ..+. -+.+.++.++--=|++|+.+.++.. +++.++. ..+.-+|
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~--~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~-~gf~g~~ 131 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAI--IPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRE-LGFVGVK 131 (293)
T ss_pred HhhhcccccceEEeeccccccc--hHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHh-cCceEEE
Confidence 6677888889888873 11111 1222 2466777777777899999887652 3333332 1233333
Q ss_pred ecCCccC-----CCch-HHHHHHHHHcCCeEEEcc
Q 023076 253 VQHSVVD-----MRPQ-QKMAELCQLTGVKLITSL 281 (287)
Q Consensus 253 ~~~n~~~-----~~~~-~~ll~~~~~~gi~via~s 281 (287)
+ ++.. .... ..+++.|+++|+.++-..
T Consensus 132 l--~p~~~~~~~~~~~~~pi~~~a~~~gvpv~iht 164 (293)
T COG2159 132 L--HPVAQGFYPDDPRLYPIYEAAEELGVPVVIHT 164 (293)
T ss_pred e--cccccCCCCCChHHHHHHHHHHHcCCCEEEEe
Confidence 3 2221 1111 379999999999987644
No 330
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.11 E-value=8.5e+02 Score=24.03 Aligned_cols=80 Identities=15% Similarity=0.110 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCCEEe--------cCCCCCC------cHHHHHHHHhhhhccCCCceEEEEEeccccCCCCCCCCHHH
Q 023076 112 DAVDAMLRYADAGLTTFD--------MADHYGP------AEDLYGIFINRVRRERPPEFLDKVRGLTKWVPPPVKMTSSI 177 (287)
Q Consensus 112 ~a~~~l~~A~~~Gin~fD--------TA~~YG~------sE~~lG~al~~~~r~r~~~~~~~v~i~tK~~~~~~~~~~~~ 177 (287)
...++++.|+|.|.==+- |...|-+ .+++.+.++.-.. .+. .+ +. ++. ..-....
T Consensus 183 aMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~~~t~el~~la~~va~-ag~-~i---Lq-st~-----d~~egaa 251 (579)
T COG3653 183 AMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALPFATWELRRLAISVAR-AGG-RI---LQ-STH-----DRDEGAA 251 (579)
T ss_pred HHHHHHHHHHhccccccchhhhcccccccccCCcccCcchHHHHHHHHHHHH-hcC-ce---eE-eec-----cccchHH
Confidence 467889999999865555 5555532 3455565554321 111 00 11 111 1223455
Q ss_pred HHHHHHHHHHHcC-CCccceEEeecC
Q 023076 178 VRESIDVSRRRMD-VPCLDMLQFHWW 202 (287)
Q Consensus 178 i~~~le~SL~rLg-~dyiDl~~lH~p 202 (287)
+.+.++++-+.-+ ...+-+.+.|.-
T Consensus 252 ~L~~l~~a~ri~~R~~~vr~v~s~~a 277 (579)
T COG3653 252 ALEALLEASRIGNRRKGVRMVMSHSA 277 (579)
T ss_pred HHHHHHHHHHhcCcccCceEEEeccc
Confidence 6666666666553 335667777753
Done!