Query 023077
Match_columns 287
No_of_seqs 103 out of 109
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023077.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023077hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13525 YfiO: Outer membrane 98.7 1.1E-07 2.4E-12 82.2 10.8 81 167-248 4-84 (203)
2 PF14559 TPR_19: Tetratricopep 98.7 5E-08 1.1E-12 68.7 6.2 57 178-238 1-57 (68)
3 PF13432 TPR_16: Tetratricopep 98.7 1.6E-07 3.5E-12 66.1 8.4 64 172-239 1-64 (65)
4 PF13512 TPR_18: Tetratricopep 98.5 1.2E-06 2.5E-11 75.5 9.6 80 168-248 10-89 (142)
5 TIGR02795 tol_pal_ybgF tol-pal 98.4 5E-06 1.1E-10 62.0 10.8 75 170-245 41-115 (119)
6 PRK10866 outer membrane biogen 98.4 2.4E-06 5.3E-11 77.0 10.0 83 167-250 31-113 (243)
7 PF13414 TPR_11: TPR repeat; P 98.4 1.1E-06 2.4E-11 62.2 5.9 67 167-237 2-69 (69)
8 TIGR02795 tol_pal_ybgF tol-pal 98.3 7.5E-06 1.6E-10 61.1 9.9 70 169-239 3-72 (119)
9 PRK10803 tol-pal system protei 98.3 6.8E-06 1.5E-10 75.6 11.3 82 169-251 181-262 (263)
10 PF09976 TPR_21: Tetratricopep 98.1 7.7E-05 1.7E-09 60.7 12.7 85 162-247 5-89 (145)
11 PF13371 TPR_9: Tetratricopept 98.1 2.9E-05 6.2E-10 55.3 8.8 70 176-249 3-72 (73)
12 TIGR03302 OM_YfiO outer membra 98.0 5.1E-05 1.1E-09 64.7 10.2 73 168-241 33-105 (235)
13 PRK15359 type III secretion sy 98.0 7.1E-05 1.5E-09 61.8 10.5 81 168-252 58-142 (144)
14 PRK10803 tol-pal system protei 98.0 7.2E-05 1.6E-09 68.9 10.6 78 169-247 143-221 (263)
15 TIGR02552 LcrH_SycD type III s 97.9 0.00017 3.7E-09 56.1 11.1 70 168-241 51-120 (135)
16 cd00189 TPR Tetratricopeptide 97.9 9.6E-05 2.1E-09 49.1 7.3 66 171-240 3-68 (100)
17 TIGR03302 OM_YfiO outer membra 97.8 0.00015 3.3E-09 61.8 9.8 67 171-238 169-235 (235)
18 PRK15359 type III secretion sy 97.7 0.00016 3.5E-09 59.6 7.4 64 171-238 27-90 (144)
19 PF13525 YfiO: Outer membrane 97.7 0.00029 6.2E-09 61.1 9.2 84 168-252 42-136 (203)
20 PLN03088 SGT1, suppressor of 97.7 0.00036 7.8E-09 65.9 10.5 82 168-253 36-118 (356)
21 PF13424 TPR_12: Tetratricopep 97.6 0.00028 6E-09 51.1 6.9 67 167-233 4-73 (78)
22 TIGR02552 LcrH_SycD type III s 97.6 0.00034 7.4E-09 54.5 7.7 73 168-244 17-90 (135)
23 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.7E-09 53.5 5.4 51 180-232 1-51 (84)
24 cd00189 TPR Tetratricopeptide 97.5 0.00056 1.2E-08 45.4 7.3 65 169-237 35-99 (100)
25 PRK10866 outer membrane biogen 97.5 0.0011 2.4E-08 59.9 11.0 82 170-252 71-170 (243)
26 PF13174 TPR_6: Tetratricopept 97.5 0.00014 3E-09 44.8 3.6 33 207-239 1-33 (33)
27 COG4105 ComL DNA uptake lipopr 97.5 0.00079 1.7E-08 63.1 10.0 80 168-248 34-113 (254)
28 PLN03088 SGT1, suppressor of 97.4 0.0023 5.1E-08 60.5 12.6 66 169-238 3-68 (356)
29 PF12688 TPR_5: Tetratrico pep 97.4 0.0012 2.5E-08 54.8 9.3 78 170-248 3-80 (120)
30 TIGR02521 type_IV_pilW type IV 97.4 0.0012 2.6E-08 52.7 9.0 61 169-233 66-126 (234)
31 PRK11788 tetratricopeptide rep 97.4 0.00068 1.5E-08 61.2 8.2 66 168-238 35-100 (389)
32 PF03704 BTAD: Bacterial trans 97.4 0.0034 7.4E-08 50.5 11.4 73 173-249 67-146 (146)
33 PF09976 TPR_21: Tetratricopep 97.4 0.0027 5.9E-08 51.7 10.9 66 167-233 47-112 (145)
34 COG1729 Uncharacterized protei 97.4 0.00099 2.1E-08 62.6 9.0 74 175-249 185-258 (262)
35 CHL00033 ycf3 photosystem I as 97.3 0.0018 3.8E-08 53.6 9.3 87 150-238 18-104 (168)
36 PRK02603 photosystem I assembl 97.3 0.0027 5.8E-08 53.0 9.7 74 165-239 32-105 (172)
37 TIGR02917 PEP_TPR_lipo putativ 97.2 0.0015 3.3E-08 62.4 8.8 68 168-239 22-89 (899)
38 COG1729 Uncharacterized protei 97.2 0.0025 5.4E-08 60.0 9.9 71 169-240 142-212 (262)
39 PRK15363 pathogenicity island 97.2 0.0019 4.1E-08 56.6 8.3 75 175-253 76-154 (157)
40 COG3063 PilF Tfp pilus assembl 97.2 0.0022 4.7E-08 60.2 9.2 72 164-239 31-102 (250)
41 PRK10370 formate-dependent nit 97.2 0.013 2.7E-07 51.3 13.2 69 168-240 107-178 (198)
42 TIGR00990 3a0801s09 mitochondr 97.1 0.0041 8.8E-08 61.7 10.5 69 165-238 124-192 (615)
43 TIGR02521 type_IV_pilW type IV 97.1 0.0097 2.1E-07 47.4 10.7 67 169-239 136-202 (234)
44 PRK15363 pathogenicity island 97.0 0.0063 1.4E-07 53.4 9.5 80 166-249 33-113 (157)
45 PF12895 Apc3: Anaphase-promot 97.0 0.0021 4.4E-08 47.7 5.5 58 169-231 26-83 (84)
46 PRK11189 lipoprotein NlpI; Pro 96.9 0.0053 1.1E-07 56.1 9.0 69 168-240 98-166 (296)
47 PRK11788 tetratricopeptide rep 96.8 0.0091 2E-07 54.0 9.6 70 169-241 215-284 (389)
48 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0098 2.1E-07 59.8 10.3 66 168-234 75-140 (453)
49 PF13428 TPR_14: Tetratricopep 96.7 0.0034 7.4E-08 42.4 4.7 34 207-240 2-35 (44)
50 TIGR03504 FimV_Cterm FimV C-te 96.7 0.0046 9.9E-08 43.8 5.3 43 209-252 2-44 (44)
51 PRK10370 formate-dependent nit 96.7 0.027 5.9E-07 49.3 11.3 68 168-239 73-143 (198)
52 PRK15179 Vi polysaccharide bio 96.7 0.011 2.4E-07 61.7 10.0 76 168-248 154-229 (694)
53 TIGR00540 hemY_coli hemY prote 96.6 0.022 4.8E-07 54.1 11.1 70 167-240 83-152 (409)
54 PRK15174 Vi polysaccharide exp 96.6 0.017 3.7E-07 58.8 10.5 66 170-239 286-351 (656)
55 TIGR00990 3a0801s09 mitochondr 96.6 0.0098 2.1E-07 59.0 8.6 68 168-239 399-466 (615)
56 PRK09782 bacteriophage N4 rece 96.5 0.014 3.1E-07 63.0 10.1 72 165-240 41-112 (987)
57 PRK12370 invasion protein regu 96.5 0.013 2.7E-07 58.2 8.7 66 170-239 340-405 (553)
58 PF13512 TPR_18: Tetratricopep 96.5 0.061 1.3E-06 46.6 11.8 79 168-247 47-140 (142)
59 cd05804 StaR_like StaR_like; a 96.4 0.029 6.3E-07 50.3 10.0 69 169-237 149-217 (355)
60 PRK10049 pgaA outer membrane p 96.4 0.021 4.5E-07 59.0 10.2 89 168-260 393-481 (765)
61 PRK15331 chaperone protein Sic 96.4 0.024 5.3E-07 50.3 9.2 89 166-254 35-153 (165)
62 KOG2376 Signal recognition par 96.4 0.026 5.7E-07 58.8 10.4 69 167-235 174-253 (652)
63 PRK11447 cellulose synthase su 96.3 0.039 8.5E-07 59.4 12.1 67 170-240 463-529 (1157)
64 PRK10747 putative protoheme IX 96.3 0.026 5.7E-07 53.6 9.7 61 168-233 328-388 (398)
65 PRK15174 Vi polysaccharide exp 96.3 0.018 3.8E-07 58.8 8.7 69 169-241 111-179 (656)
66 PRK11189 lipoprotein NlpI; Pro 96.2 0.026 5.7E-07 51.6 8.8 69 168-240 64-132 (296)
67 PRK14574 hmsH outer membrane p 96.2 0.024 5.1E-07 60.3 9.7 31 208-238 104-134 (822)
68 PRK11447 cellulose synthase su 96.2 0.033 7.2E-07 60.0 10.9 66 171-240 354-419 (1157)
69 TIGR02917 PEP_TPR_lipo putativ 96.2 0.031 6.6E-07 53.7 9.5 64 171-238 162-225 (899)
70 PRK12370 invasion protein regu 96.2 0.053 1.2E-06 53.8 11.2 64 169-236 373-436 (553)
71 TIGR00540 hemY_coli hemY prote 96.1 0.054 1.2E-06 51.5 10.7 55 175-233 160-214 (409)
72 PF07719 TPR_2: Tetratricopept 96.1 0.018 4E-07 35.5 5.0 32 169-200 2-33 (34)
73 PF13429 TPR_15: Tetratricopep 96.1 0.029 6.3E-07 49.7 7.9 78 171-252 183-261 (280)
74 PRK15179 Vi polysaccharide bio 96.0 0.025 5.3E-07 59.1 8.4 61 174-238 126-186 (694)
75 PRK10747 putative protoheme IX 96.0 0.13 2.9E-06 48.9 12.5 61 173-237 158-218 (398)
76 COG3629 DnrI DNA-binding trans 96.0 0.071 1.5E-06 50.7 10.4 61 170-234 155-215 (280)
77 PRK10049 pgaA outer membrane p 95.9 0.033 7.2E-07 57.5 8.8 65 171-239 362-426 (765)
78 PRK02603 photosystem I assembl 95.9 0.051 1.1E-06 45.4 8.3 67 168-238 72-152 (172)
79 PRK09782 bacteriophage N4 rece 95.8 0.054 1.2E-06 58.7 10.1 66 169-238 610-675 (987)
80 COG5010 TadD Flp pilus assembl 95.8 0.031 6.6E-07 52.8 7.2 63 173-239 105-167 (257)
81 cd05804 StaR_like StaR_like; a 95.7 0.057 1.2E-06 48.5 8.4 63 171-237 117-179 (355)
82 PRK14574 hmsH outer membrane p 95.6 0.058 1.3E-06 57.4 9.5 76 170-252 104-179 (822)
83 KOG0553 TPR repeat-containing 95.5 0.1 2.2E-06 50.5 9.5 98 174-275 121-226 (304)
84 COG2956 Predicted N-acetylgluc 95.4 0.097 2.1E-06 51.8 9.2 84 145-233 158-241 (389)
85 CHL00033 ycf3 photosystem I as 95.3 0.19 4.2E-06 41.5 9.6 59 168-230 72-137 (168)
86 PF13429 TPR_15: Tetratricopep 95.2 0.14 3E-06 45.5 9.0 70 171-242 113-183 (280)
87 PF12688 TPR_5: Tetratrico pep 95.2 0.19 4.2E-06 41.7 9.3 63 170-233 40-102 (120)
88 PF07719 TPR_2: Tetratricopept 95.2 0.062 1.3E-06 33.1 4.9 32 207-238 2-33 (34)
89 PRK10153 DNA-binding transcrip 95.2 0.095 2.1E-06 52.9 8.8 75 171-250 423-497 (517)
90 PF12862 Apc5: Anaphase-promot 95.1 0.12 2.6E-06 40.2 7.2 77 176-252 6-90 (94)
91 KOG0543 FKBP-type peptidyl-pro 94.9 0.5 1.1E-05 47.3 12.7 66 170-239 259-324 (397)
92 PF03704 BTAD: Bacterial trans 94.8 0.5 1.1E-05 38.0 10.5 74 167-240 5-96 (146)
93 PF00515 TPR_1: Tetratricopept 94.7 0.074 1.6E-06 33.2 4.4 31 169-199 2-32 (34)
94 COG3071 HemY Uncharacterized e 94.7 0.55 1.2E-05 47.0 12.3 62 167-233 327-388 (400)
95 PF12569 NARP1: NMDA receptor- 94.5 0.16 3.4E-06 51.6 8.3 66 171-240 7-72 (517)
96 PF13174 TPR_6: Tetratricopept 94.4 0.083 1.8E-06 32.2 3.9 31 170-200 2-32 (33)
97 PF13428 TPR_14: Tetratricopep 94.3 0.099 2.1E-06 35.2 4.5 41 170-214 3-43 (44)
98 KOG0548 Molecular co-chaperone 94.3 0.46 9.9E-06 49.1 11.0 70 166-239 356-425 (539)
99 PF08631 SPO22: Meiosis protei 94.2 0.8 1.7E-05 41.9 11.6 81 165-245 32-127 (278)
100 PF14938 SNAP: Soluble NSF att 94.2 0.22 4.8E-06 45.3 8.0 80 168-247 114-197 (282)
101 PF13431 TPR_17: Tetratricopep 93.9 0.058 1.2E-06 35.4 2.7 33 191-227 2-34 (34)
102 PF09295 ChAPs: ChAPs (Chs5p-A 93.8 0.27 5.8E-06 48.6 8.2 62 168-233 234-295 (395)
103 COG2956 Predicted N-acetylgluc 93.7 0.27 5.8E-06 48.8 7.9 71 168-241 214-284 (389)
104 COG4700 Uncharacterized protei 93.6 0.75 1.6E-05 43.2 10.2 67 174-243 130-197 (251)
105 PF14561 TPR_20: Tetratricopep 93.3 0.13 2.8E-06 40.6 4.2 30 169-198 23-52 (90)
106 PF14938 SNAP: Soluble NSF att 93.3 0.17 3.7E-06 46.0 5.5 68 168-235 74-144 (282)
107 KOG2076 RNA polymerase III tra 93.3 0.17 3.7E-06 54.7 6.3 58 172-233 453-510 (895)
108 COG3118 Thioredoxin domain-con 93.0 0.72 1.6E-05 44.7 9.5 75 149-233 121-195 (304)
109 PF13181 TPR_8: Tetratricopept 93.0 0.24 5.2E-06 30.7 4.3 31 169-199 2-32 (34)
110 PF13432 TPR_16: Tetratricopep 92.7 0.26 5.6E-06 34.4 4.6 35 210-244 1-36 (65)
111 KOG2076 RNA polymerase III tra 92.6 0.44 9.5E-06 51.7 8.1 69 168-242 139-207 (895)
112 PF11817 Foie-gras_1: Foie gra 92.5 1.8 3.8E-05 39.2 10.9 67 167-233 177-245 (247)
113 PF14863 Alkyl_sulf_dimr: Alky 92.1 0.43 9.2E-06 41.1 6.0 53 168-224 70-122 (141)
114 PF00515 TPR_1: Tetratricopept 92.1 0.5 1.1E-05 29.4 4.9 32 207-238 2-33 (34)
115 PF10579 Rapsyn_N: Rapsyn N-te 91.8 0.77 1.7E-05 36.9 6.7 63 166-229 4-66 (80)
116 COG4235 Cytochrome c biogenesi 91.7 1.7 3.8E-05 41.8 10.2 131 106-240 126-261 (287)
117 smart00028 TPR Tetratricopepti 91.6 0.44 9.6E-06 26.1 3.9 30 208-237 3-32 (34)
118 PF13176 TPR_7: Tetratricopept 91.4 0.33 7.3E-06 31.6 3.7 25 209-233 2-26 (36)
119 KOG0548 Molecular co-chaperone 91.1 0.84 1.8E-05 47.2 8.0 71 171-241 5-105 (539)
120 COG4783 Putative Zn-dependent 90.8 0.96 2.1E-05 46.3 7.9 55 175-233 347-401 (484)
121 PF07219 HemY_N: HemY protein 90.6 1.2 2.7E-05 35.7 7.0 56 162-221 53-108 (108)
122 KOG0550 Molecular chaperone (D 90.5 1 2.2E-05 46.0 7.7 67 167-233 248-314 (486)
123 KOG1127 TPR repeat-containing 90.1 1.8 4E-05 48.1 9.8 73 168-244 2-75 (1238)
124 PF02064 MAS20: MAS20 protein 89.5 0.92 2E-05 38.5 5.6 39 165-203 60-98 (121)
125 smart00028 TPR Tetratricopepti 89.4 0.76 1.6E-05 25.1 3.6 30 170-199 3-32 (34)
126 KOG0543 FKBP-type peptidyl-pro 89.2 1.9 4.1E-05 43.3 8.4 78 163-241 203-291 (397)
127 PF14853 Fis1_TPR_C: Fis1 C-te 89.0 2.2 4.7E-05 31.2 6.6 43 208-253 3-45 (53)
128 PF13181 TPR_8: Tetratricopept 89.0 0.98 2.1E-05 27.9 4.2 31 207-237 2-32 (34)
129 PF09613 HrpB1_HrpK: Bacterial 88.9 5.5 0.00012 35.4 10.2 85 166-255 42-126 (160)
130 KOG1840 Kinesin light chain [C 88.9 1.5 3.2E-05 44.9 7.6 59 174-232 247-309 (508)
131 COG4105 ComL DNA uptake lipopr 88.9 7.1 0.00015 37.1 11.5 87 166-256 165-251 (254)
132 KOG2002 TPR-containing nuclear 88.9 0.92 2E-05 49.9 6.4 54 179-233 281-334 (1018)
133 COG4700 Uncharacterized protei 88.0 5.9 0.00013 37.4 10.3 90 146-238 62-156 (251)
134 PF13374 TPR_10: Tetratricopep 88.0 1.3 2.8E-05 27.8 4.3 27 207-233 3-29 (42)
135 PF07721 TPR_4: Tetratricopept 87.9 0.77 1.7E-05 28.3 3.1 24 207-230 2-25 (26)
136 KOG0624 dsRNA-activated protei 87.5 1.7 3.7E-05 44.0 6.9 69 170-238 271-339 (504)
137 PF06552 TOM20_plant: Plant sp 87.4 3.4 7.5E-05 37.7 8.2 70 182-257 49-129 (186)
138 PF10345 Cohesin_load: Cohesin 87.3 6.3 0.00014 40.1 10.9 94 166-259 359-466 (608)
139 PF09670 Cas_Cas02710: CRISPR- 87.2 5.7 0.00012 38.7 10.1 67 169-238 132-200 (379)
140 PF04733 Coatomer_E: Coatomer 86.9 2.6 5.6E-05 39.5 7.4 75 167-245 200-276 (290)
141 TIGR02561 HrpB1_HrpK type III 86.8 5.9 0.00013 35.2 9.1 84 168-256 44-127 (153)
142 PF13374 TPR_10: Tetratricopep 86.7 1.9 4.1E-05 27.1 4.6 31 168-198 2-32 (42)
143 PRK04841 transcriptional regul 86.7 2.5 5.4E-05 43.4 7.8 65 172-236 695-761 (903)
144 KOG0547 Translocase of outer m 86.7 2.5 5.3E-05 44.2 7.6 61 169-233 116-176 (606)
145 KOG0547 Translocase of outer m 86.6 1.4 2.9E-05 46.0 5.8 67 168-238 394-460 (606)
146 PF13176 TPR_7: Tetratricopept 86.1 1.7 3.8E-05 28.2 4.2 27 171-197 2-28 (36)
147 COG0457 NrfG FOG: TPR repeat [ 85.9 10 0.00022 27.7 8.6 62 168-233 95-157 (291)
148 KOG2002 TPR-containing nuclear 85.5 2.6 5.6E-05 46.6 7.4 72 166-240 305-376 (1018)
149 PRK04841 transcriptional regul 85.2 7.6 0.00017 40.0 10.4 64 170-233 533-600 (903)
150 KOG0624 dsRNA-activated protei 85.1 11 0.00024 38.5 11.0 113 100-233 104-216 (504)
151 PF04184 ST7: ST7 protein; In 85.0 3.8 8.3E-05 42.6 8.1 85 168-254 223-310 (539)
152 COG3071 HemY Uncharacterized e 85.0 26 0.00057 35.5 13.6 62 171-236 156-217 (400)
153 KOG4234 TPR repeat-containing 84.4 17 0.00036 34.9 11.3 75 171-252 137-211 (271)
154 PF14561 TPR_20: Tetratricopep 83.9 11 0.00025 29.6 8.7 49 187-239 7-55 (90)
155 KOG3364 Membrane protein invol 83.9 4 8.7E-05 36.2 6.7 80 167-252 31-114 (149)
156 KOG4234 TPR repeat-containing 83.7 13 0.00028 35.6 10.3 71 166-237 93-165 (271)
157 PF13371 TPR_9: Tetratricopept 83.3 2.9 6.3E-05 29.4 4.7 35 167-201 28-62 (73)
158 PRK11619 lytic murein transgly 83.0 9.5 0.00021 40.0 10.1 68 175-248 319-386 (644)
159 COG0457 NrfG FOG: TPR repeat [ 82.9 16 0.00035 26.7 8.6 58 178-238 177-234 (291)
160 PF13414 TPR_11: TPR repeat; P 82.7 2.7 5.8E-05 29.4 4.3 34 207-240 4-37 (69)
161 PRK15490 Vi polysaccharide bio 82.7 6.8 0.00015 41.1 8.9 65 180-248 20-84 (578)
162 PF09295 ChAPs: ChAPs (Chs5p-A 82.2 9.6 0.00021 37.9 9.4 71 171-246 203-273 (395)
163 KOG4626 O-linked N-acetylgluco 81.6 4.4 9.4E-05 43.8 7.0 62 168-233 354-415 (966)
164 KOG2003 TPR repeat-containing 81.2 3 6.5E-05 43.7 5.6 56 179-238 637-692 (840)
165 PF09797 NatB_MDM20: N-acetylt 80.9 2.8 6E-05 39.7 4.9 49 181-233 196-244 (365)
166 KOG1126 DNA-binding cell divis 80.5 2.9 6.2E-05 44.3 5.3 60 170-233 491-550 (638)
167 PF09986 DUF2225: Uncharacteri 80.2 9.5 0.00021 34.5 7.9 72 177-249 134-211 (214)
168 PF14559 TPR_19: Tetratricopep 79.9 2.5 5.3E-05 29.4 3.3 34 168-201 25-58 (68)
169 KOG1840 Kinesin light chain [C 79.8 7.5 0.00016 40.0 7.9 61 173-233 204-268 (508)
170 PRK14720 transcript cleavage f 79.3 5.3 0.00011 43.8 7.0 67 168-236 65-146 (906)
171 PF12569 NARP1: NMDA receptor- 78.3 23 0.0005 36.3 10.9 83 170-257 196-278 (517)
172 PF03745 DUF309: Domain of unk 78.2 9.8 0.00021 28.5 6.2 59 171-229 2-62 (62)
173 PF10607 CLTH: CTLH/CRA C-term 77.8 26 0.00056 28.5 9.1 79 173-252 6-85 (145)
174 PLN02789 farnesyltranstransfer 77.7 12 0.00026 35.7 8.2 55 181-239 50-105 (320)
175 KOG2003 TPR repeat-containing 77.4 4.8 0.0001 42.3 5.7 90 171-266 493-583 (840)
176 KOG4626 O-linked N-acetylgluco 77.0 6.6 0.00014 42.5 6.7 61 174-238 122-182 (966)
177 COG2976 Uncharacterized protei 76.6 7.9 0.00017 36.0 6.3 64 169-233 90-153 (207)
178 PF06248 Zw10: Centromere/kine 76.3 68 0.0015 32.8 13.5 86 112-200 52-140 (593)
179 COG4783 Putative Zn-dependent 76.2 46 0.001 34.5 12.2 130 115-255 253-390 (484)
180 PF13424 TPR_12: Tetratricopep 75.9 5.7 0.00012 28.5 4.3 32 166-197 44-75 (78)
181 PF02259 FAT: FAT domain; Int 75.2 21 0.00045 32.0 8.6 71 164-234 142-212 (352)
182 PF11207 DUF2989: Protein of u 74.9 12 0.00026 34.6 7.1 55 172-226 143-198 (203)
183 KOG1125 TPR repeat-containing 74.2 12 0.00026 39.4 7.6 79 170-252 287-379 (579)
184 KOG3785 Uncharacterized conser 73.8 8.8 0.00019 39.3 6.4 54 177-233 31-84 (557)
185 KOG1173 Anaphase-promoting com 73.0 19 0.0004 38.2 8.6 74 168-245 244-317 (611)
186 PF09477 Type_III_YscG: Bacter 72.7 17 0.00037 31.2 6.9 67 175-251 47-113 (116)
187 PLN02789 farnesyltranstransfer 72.4 28 0.00061 33.2 9.2 62 174-239 112-175 (320)
188 PF05168 HEPN: HEPN domain; I 72.4 40 0.00086 25.5 8.4 33 164-196 4-36 (118)
189 PF13281 DUF4071: Domain of un 72.2 66 0.0014 32.2 11.9 56 178-233 151-210 (374)
190 PF09613 HrpB1_HrpK: Bacterial 72.1 63 0.0014 28.9 10.6 67 167-237 9-75 (160)
191 TIGR00756 PPR pentatricopeptid 71.5 7.1 0.00015 23.2 3.3 25 209-233 3-27 (35)
192 PF01535 PPR: PPR repeat; Int 71.0 7 0.00015 23.1 3.2 25 209-233 3-27 (31)
193 TIGR02508 type_III_yscG type I 69.9 17 0.00037 31.1 6.3 67 176-252 47-113 (115)
194 PF12854 PPR_1: PPR repeat 69.9 6.2 0.00013 25.7 3.0 25 208-232 9-33 (34)
195 PLN03218 maturation of RBCL 1; 69.3 17 0.00037 40.4 7.8 52 179-233 660-711 (1060)
196 KOG4555 TPR repeat-containing 69.1 45 0.00098 30.2 9.1 50 174-227 49-98 (175)
197 KOG3060 Uncharacterized conser 68.8 30 0.00065 33.7 8.5 81 168-254 52-132 (289)
198 KOG2053 Mitochondrial inherita 68.2 30 0.00065 38.4 9.2 62 175-240 50-111 (932)
199 KOG1126 DNA-binding cell divis 68.1 15 0.00033 39.1 6.8 63 174-240 529-591 (638)
200 PLN03218 maturation of RBCL 1; 67.8 22 0.00047 39.6 8.3 53 180-233 554-606 (1060)
201 COG3118 Thioredoxin domain-con 67.0 77 0.0017 31.2 10.9 73 179-254 198-284 (304)
202 PF14346 DUF4398: Domain of un 67.0 13 0.00029 29.3 4.9 34 163-196 40-73 (103)
203 PF04733 Coatomer_E: Coatomer 66.8 10 0.00022 35.6 4.9 63 172-238 169-233 (290)
204 COG4235 Cytochrome c biogenesi 66.1 41 0.00088 32.6 8.8 86 141-237 136-224 (287)
205 PF14853 Fis1_TPR_C: Fis1 C-te 65.9 14 0.00029 27.1 4.4 33 171-203 4-36 (53)
206 PF10300 DUF3808: Protein of u 65.9 17 0.00037 36.3 6.5 66 168-233 267-332 (468)
207 KOG1173 Anaphase-promoting com 65.4 19 0.00042 38.1 6.9 62 172-237 316-377 (611)
208 PLN03077 Protein ECB2; Provisi 65.2 25 0.00055 36.7 7.8 61 172-235 557-618 (857)
209 PLN03077 Protein ECB2; Provisi 64.6 39 0.00085 35.4 9.0 56 176-233 596-652 (857)
210 TIGR03362 VI_chp_7 type VI sec 64.2 13 0.00029 35.6 5.2 81 170-252 215-296 (301)
211 PF11817 Foie-gras_1: Foie gra 63.7 17 0.00036 33.0 5.5 50 186-235 156-207 (247)
212 COG2976 Uncharacterized protei 63.0 1.2E+02 0.0025 28.5 10.8 82 162-245 47-128 (207)
213 KOG4056 Translocase of outer m 62.6 36 0.00078 30.2 7.1 37 167-203 80-116 (143)
214 TIGR00985 3a0801s04tom mitocho 62.5 93 0.002 27.5 9.7 39 166-204 88-127 (148)
215 KOG1308 Hsp70-interacting prot 62.4 7 0.00015 39.2 3.0 78 172-253 118-199 (377)
216 PF07543 PGA2: Protein traffic 62.1 23 0.00049 30.8 5.8 29 98-128 97-125 (140)
217 KOG3807 Predicted membrane pro 61.3 75 0.0016 32.7 9.9 90 158-248 225-317 (556)
218 PF12487 DUF3703: Protein of u 61.2 77 0.0017 26.9 8.6 62 165-226 6-67 (112)
219 KOG4814 Uncharacterized conser 61.0 87 0.0019 34.4 10.8 67 170-237 356-424 (872)
220 COG3947 Response regulator con 60.8 42 0.00092 33.5 8.0 62 168-233 279-340 (361)
221 KOG1156 N-terminal acetyltrans 60.5 29 0.00064 37.3 7.3 74 162-239 179-252 (700)
222 PLN03081 pentatricopeptide (PP 60.4 37 0.00079 34.7 7.8 51 180-234 506-556 (697)
223 PF13041 PPR_2: PPR repeat fam 60.2 20 0.00043 24.2 4.2 33 208-240 5-37 (50)
224 COG3096 MukB Uncharacterized p 60.2 2.3E+02 0.0049 32.1 13.7 70 183-252 415-505 (1480)
225 PF07721 TPR_4: Tetratricopept 59.9 15 0.00033 22.4 3.2 23 170-192 3-25 (26)
226 COG5010 TadD Flp pilus assembl 59.1 87 0.0019 30.1 9.5 75 155-233 153-229 (257)
227 PF13628 DUF4142: Domain of un 59.0 14 0.0003 30.4 3.8 36 219-254 95-131 (139)
228 PLN03081 pentatricopeptide (PP 58.4 27 0.00059 35.6 6.5 49 179-234 371-419 (697)
229 PF10516 SHNi-TPR: SHNi-TPR; 58.3 16 0.00035 25.2 3.4 28 170-197 3-30 (38)
230 COG2015 Alkyl sulfatase and re 57.6 18 0.00039 38.2 5.1 57 168-228 452-508 (655)
231 KOG1155 Anaphase-promoting com 57.2 21 0.00045 37.4 5.4 46 189-239 419-464 (559)
232 KOG4403 Cell surface glycoprot 56.7 1.1E+02 0.0023 32.2 10.2 30 105-134 244-273 (575)
233 PRK11906 transcriptional regul 56.7 81 0.0018 32.5 9.5 67 168-239 338-405 (458)
234 PF06957 COPI_C: Coatomer (COP 56.6 39 0.00084 34.3 7.1 91 164-254 200-348 (422)
235 PF13646 HEAT_2: HEAT repeats; 56.0 55 0.0012 23.6 6.2 68 175-249 20-87 (88)
236 KOG1125 TPR repeat-containing 55.5 36 0.00077 36.1 6.8 66 168-238 319-385 (579)
237 TIGR02498 type_III_ssaH type I 55.2 63 0.0014 26.2 6.7 60 168-231 6-65 (79)
238 PRK04778 septation ring format 54.7 36 0.00077 34.9 6.7 38 166-203 517-554 (569)
239 KOG3060 Uncharacterized conser 53.9 33 0.00072 33.4 5.9 58 180-237 98-185 (289)
240 KOG1155 Anaphase-promoting com 53.9 68 0.0015 33.8 8.4 78 171-251 469-549 (559)
241 PF10952 DUF2753: Protein of u 53.8 1.2E+02 0.0026 26.9 8.8 56 172-227 5-71 (140)
242 TIGR02561 HrpB1_HrpK type III 53.7 1.7E+02 0.0036 26.3 10.3 84 168-255 10-94 (153)
243 PF10304 DUF2411: Domain of un 53.4 40 0.00087 23.0 4.7 28 227-254 8-35 (36)
244 KOG1144 Translation initiation 53.3 75 0.0016 35.5 8.9 55 103-161 210-264 (1064)
245 COG3063 PilF Tfp pilus assembl 53.1 47 0.001 31.8 6.7 56 173-232 144-199 (250)
246 KOG4648 Uncharacterized conser 52.5 44 0.00096 34.3 6.7 31 171-201 100-130 (536)
247 PF13812 PPR_3: Pentatricopept 51.9 41 0.00088 20.2 4.2 26 208-233 3-28 (34)
248 cd08977 SusD starch binding ou 51.1 49 0.0011 30.7 6.5 52 183-234 140-209 (359)
249 KOG2376 Signal recognition par 50.7 61 0.0013 34.8 7.7 64 172-243 83-146 (652)
250 PF04781 DUF627: Protein of un 50.6 1E+02 0.0022 26.2 7.6 30 174-203 2-31 (111)
251 KOG3785 Uncharacterized conser 49.8 1.7E+02 0.0037 30.4 10.4 76 168-247 151-226 (557)
252 KOG0495 HAT repeat protein [RN 49.7 75 0.0016 35.0 8.2 93 168-264 651-754 (913)
253 PF02985 HEAT: HEAT repeat; I 48.9 38 0.00081 21.4 3.8 24 228-252 4-27 (31)
254 KOG1129 TPR repeat-containing 48.7 49 0.0011 33.8 6.3 61 173-238 228-288 (478)
255 PF06160 EzrA: Septation ring 47.9 1.2E+02 0.0025 31.4 9.0 37 167-203 514-551 (560)
256 PRK09591 celC cellobiose phosp 47.8 89 0.0019 25.8 6.8 58 154-215 6-63 (104)
257 COG4649 Uncharacterized protei 47.8 1.8E+02 0.0038 27.5 9.3 80 171-253 135-215 (221)
258 PF01093 Clusterin: Clusterin; 47.6 2.1E+02 0.0046 29.4 10.7 81 100-195 13-93 (436)
259 PLN03098 LPA1 LOW PSII ACCUMUL 46.5 60 0.0013 33.4 6.7 38 203-240 72-109 (453)
260 PRK10941 hypothetical protein; 45.6 1.7E+02 0.0037 27.7 9.1 74 177-254 190-263 (269)
261 KOG0163 Myosin class VI heavy 45.2 1.3E+02 0.0028 33.8 9.2 10 262-271 1149-1158(1259)
262 KOG1070 rRNA processing protei 45.1 1.9E+02 0.004 34.4 10.7 102 142-252 1472-1575(1710)
263 KOG4555 TPR repeat-containing 45.0 2.4E+02 0.0053 25.7 11.1 71 173-244 82-152 (175)
264 KOG1130 Predicted G-alpha GTPa 45.0 49 0.0011 34.7 5.8 72 159-230 266-339 (639)
265 PF11846 DUF3366: Domain of un 44.6 1.6E+02 0.0035 25.2 8.2 58 183-245 126-183 (193)
266 KOG1174 Anaphase-promoting com 44.5 50 0.0011 34.5 5.8 72 167-238 299-400 (564)
267 PF04782 DUF632: Protein of un 44.3 3.1E+02 0.0068 26.7 12.3 34 99-132 91-125 (312)
268 cd02679 MIT_spastin MIT: domai 44.3 34 0.00073 27.1 3.7 27 169-195 9-35 (79)
269 KOG4340 Uncharacterized conser 42.9 40 0.00087 34.1 4.7 63 167-233 143-205 (459)
270 TIGR00823 EIIA-LAC phosphotran 42.6 1.5E+02 0.0033 24.2 7.3 59 154-216 3-61 (99)
271 PRK10780 periplasmic chaperone 42.5 2.2E+02 0.0048 24.4 11.4 29 100-128 47-76 (165)
272 cd00280 TRFH Telomeric Repeat 42.0 1.1E+02 0.0024 28.5 7.2 66 186-254 87-156 (200)
273 KOG1586 Protein required for f 41.9 54 0.0012 31.9 5.3 65 182-246 128-194 (288)
274 COG4649 Uncharacterized protei 41.6 2.3E+02 0.0051 26.7 9.1 76 171-248 61-136 (221)
275 KOG1128 Uncharacterized conser 41.4 62 0.0013 35.4 6.1 64 168-236 519-582 (777)
276 PF12968 DUF3856: Domain of Un 41.4 73 0.0016 28.3 5.6 54 178-232 65-126 (144)
277 KOG1586 Protein required for f 41.2 1.1E+02 0.0024 29.9 7.2 75 168-242 73-150 (288)
278 smart00748 HEPN Higher Eukaryt 41.2 39 0.00084 26.6 3.6 31 166-196 2-32 (113)
279 PF10255 Paf67: RNA polymerase 40.5 48 0.001 33.4 5.0 53 180-233 134-191 (404)
280 PF09450 DUF2019: Domain of un 40.1 43 0.00092 28.2 3.8 55 177-249 17-71 (106)
281 PRK14720 transcript cleavage f 40.0 1E+02 0.0022 34.4 7.6 64 170-239 33-96 (906)
282 smart00509 TFS2N Domain in the 40.0 35 0.00075 26.2 3.1 54 183-253 17-70 (75)
283 PF12862 Apc5: Anaphase-promot 39.9 77 0.0017 24.5 5.0 39 168-206 41-79 (94)
284 PRK09687 putative lyase; Provi 39.9 1.4E+02 0.0029 28.0 7.5 75 174-254 42-120 (280)
285 PF10345 Cohesin_load: Cohesin 39.6 1.9E+02 0.0041 29.7 9.1 68 168-236 59-129 (608)
286 KOG1174 Anaphase-promoting com 39.4 4.8E+02 0.01 27.7 11.8 79 171-254 441-519 (564)
287 PRK13184 pknD serine/threonine 38.6 50 0.0011 36.6 5.1 84 150-238 486-584 (932)
288 KOG1130 Predicted G-alpha GTPa 38.3 63 0.0014 34.0 5.4 59 168-226 17-75 (639)
289 KOG2460 Signal recognition par 38.3 1E+02 0.0022 32.9 6.9 64 184-256 387-463 (593)
290 PF10602 RPN7: 26S proteasome 38.0 2.8E+02 0.006 24.2 13.2 62 171-232 76-139 (177)
291 PRK15356 type III secretion sy 37.9 62 0.0013 26.0 4.2 63 182-256 8-70 (75)
292 PRK11906 transcriptional regul 37.1 94 0.002 32.1 6.4 67 168-237 372-438 (458)
293 KOG4031 Vesicle coat protein c 37.1 3.7E+02 0.008 25.5 10.2 28 140-167 127-154 (216)
294 KOG1839 Uncharacterized protei 37.1 43 0.00094 38.3 4.4 63 166-231 930-998 (1236)
295 KOG2607 CDK5 activator-binding 36.8 1.4E+02 0.003 31.2 7.5 133 105-265 127-260 (505)
296 PF02259 FAT: FAT domain; Int 36.4 2.2E+02 0.0048 25.5 8.1 86 168-253 184-307 (352)
297 PF10602 RPN7: 26S proteasome 36.3 2.9E+02 0.0064 24.1 10.9 100 165-267 33-139 (177)
298 KOG0163 Myosin class VI heavy 35.3 1.8E+02 0.0039 32.8 8.4 12 110-121 927-938 (1259)
299 PF07720 TPR_3: Tetratricopept 35.3 1.2E+02 0.0026 20.5 4.7 17 174-190 7-23 (36)
300 PHA02537 M terminase endonucle 35.0 3.2E+02 0.0069 25.7 9.1 85 168-254 129-226 (230)
301 PRK09687 putative lyase; Provi 34.7 2.5E+02 0.0053 26.3 8.4 61 184-251 157-218 (280)
302 cd02678 MIT_VPS4 MIT: domain c 34.7 1E+02 0.0022 23.2 4.9 31 166-196 4-34 (75)
303 TIGR02710 CRISPR-associated pr 34.5 1.2E+02 0.0025 30.5 6.5 61 171-231 133-196 (380)
304 KOG3081 Vesicle coat complex C 34.5 3.4E+02 0.0074 26.8 9.4 53 180-236 185-237 (299)
305 cd00183 TFIIS_I N-terminal dom 34.4 48 0.001 25.3 3.1 25 229-254 49-73 (76)
306 PF00610 DEP: Domain found in 34.4 37 0.00081 24.8 2.4 33 201-233 16-49 (74)
307 PF07079 DUF1347: Protein of u 34.3 1.7E+02 0.0037 30.9 7.7 61 168-233 462-522 (549)
308 smart00386 HAT HAT (Half-A-TPR 33.7 98 0.0021 17.8 3.9 17 221-237 2-18 (33)
309 KOG4162 Predicted calmodulin-b 33.7 1.6E+02 0.0035 32.5 7.7 54 175-232 725-780 (799)
310 KOG2300 Uncharacterized conser 33.5 2.8E+02 0.0062 29.7 9.2 84 168-251 445-533 (629)
311 TIGR01716 RGG_Cterm transcript 33.4 2.3E+02 0.0049 24.4 7.4 67 166-232 126-194 (220)
312 COG0790 FOG: TPR repeat, SEL1 33.0 3.6E+02 0.0077 24.0 11.7 56 183-246 206-276 (292)
313 PF12761 End3: Actin cytoskele 32.7 1.7E+02 0.0036 27.2 6.8 26 100-131 95-121 (195)
314 PF08312 cwf21: cwf21 domain; 32.6 1.2E+02 0.0027 21.8 4.7 39 114-156 5-43 (46)
315 KOG1156 N-terminal acetyltrans 32.5 3.9E+02 0.0085 29.3 10.2 119 117-258 338-456 (700)
316 PF12348 CLASP_N: CLASP N term 32.5 1.9E+02 0.0041 24.9 6.8 45 207-252 150-204 (228)
317 KOG2891 Surface glycoprotein [ 32.5 1.5E+02 0.0032 29.8 6.7 28 103-130 321-348 (445)
318 PF08424 NRDE-2: NRDE-2, neces 32.5 2.5E+02 0.0054 26.6 8.1 64 184-252 47-110 (321)
319 PF13646 HEAT_2: HEAT repeats; 31.7 2E+02 0.0042 20.7 7.4 47 207-255 15-61 (88)
320 PRK10454 PTS system N,N'-diace 31.6 3.1E+02 0.0068 23.2 7.7 62 152-217 15-76 (115)
321 PF05957 DUF883: Bacterial pro 31.4 2.5E+02 0.0055 21.8 8.7 83 113-214 5-87 (94)
322 cd02682 MIT_AAA_Arch MIT: doma 31.1 81 0.0018 24.9 3.9 35 209-243 9-50 (75)
323 cd02680 MIT_calpain7_2 MIT: do 31.1 2.6E+02 0.0057 22.0 7.6 32 167-198 5-36 (75)
324 KOG2264 Exostosin EXT1L [Signa 31.1 1.5E+02 0.0033 32.2 7.0 22 112-133 92-113 (907)
325 PF02064 MAS20: MAS20 protein 31.1 1.2E+02 0.0025 25.9 5.1 39 209-254 66-105 (121)
326 PF05843 Suf: Suppressor of fo 30.7 1.7E+02 0.0037 26.9 6.6 16 107-122 12-27 (280)
327 PF13206 VSG_B: Trypanosomal V 30.6 1.3E+02 0.0028 27.8 5.8 33 98-130 317-349 (351)
328 KOG1129 TPR repeat-containing 30.6 94 0.002 31.8 5.2 29 168-196 358-386 (478)
329 TIGR03504 FimV_Cterm FimV C-te 30.2 1.1E+02 0.0025 21.6 4.2 26 171-196 2-27 (44)
330 PRK10153 DNA-binding transcrip 30.1 1.3E+02 0.0028 30.9 6.2 47 168-218 339-388 (517)
331 PF04212 MIT: MIT (microtubule 29.9 1E+02 0.0022 22.5 4.1 21 211-231 10-30 (69)
332 PF04910 Tcf25: Transcriptiona 29.7 2.9E+02 0.0063 27.0 8.2 103 168-270 40-180 (360)
333 PF07720 TPR_3: Tetratricopept 29.6 1.3E+02 0.0028 20.3 4.2 27 207-233 2-30 (36)
334 PF04910 Tcf25: Transcriptiona 29.1 3.2E+02 0.007 26.7 8.5 43 164-206 99-141 (360)
335 PF04348 LppC: LppC putative l 28.9 19 0.0004 36.9 0.0 67 165-232 21-87 (536)
336 PF04184 ST7: ST7 protein; In 28.9 2.1E+02 0.0047 30.3 7.5 59 171-231 262-320 (539)
337 PF10366 Vps39_1: Vacuolar sor 28.7 77 0.0017 25.9 3.6 25 209-233 42-66 (108)
338 KOG1029 Endocytic adaptor prot 28.7 3.3E+02 0.0072 30.8 9.0 15 65-79 279-293 (1118)
339 KOG4162 Predicted calmodulin-b 28.5 1.4E+02 0.003 32.9 6.3 56 185-244 461-516 (799)
340 PF08631 SPO22: Meiosis protei 28.4 81 0.0018 28.9 4.0 28 169-196 247-274 (278)
341 KOG4552 Vitamin-D-receptor int 28.1 3E+02 0.0065 26.5 7.7 26 140-165 79-104 (272)
342 PF05942 PaREP1: Archaeal PaRE 27.7 1E+02 0.0022 25.0 4.1 33 164-196 2-34 (115)
343 PF10300 DUF3808: Protein of u 27.5 1.5E+02 0.0032 29.8 6.0 63 168-233 305-374 (468)
344 KOG2180 Late Golgi protein sor 27.5 5.2E+02 0.011 28.7 10.2 84 114-199 80-163 (793)
345 KOG1464 COP9 signalosome, subu 27.2 1.4E+02 0.003 30.1 5.6 62 177-239 36-97 (440)
346 KOG2053 Mitochondrial inherita 27.2 1.5E+02 0.0033 33.2 6.3 70 165-238 6-75 (932)
347 COG3014 Uncharacterized protei 27.1 2.4E+02 0.0052 29.1 7.2 63 170-232 60-151 (449)
348 PF04212 MIT: MIT (microtubule 27.1 2.5E+02 0.0054 20.4 10.2 30 167-196 4-33 (69)
349 KOG4196 bZIP transcription fac 27.0 3.8E+02 0.0083 23.7 7.6 22 108-129 69-90 (135)
350 PF06518 DUF1104: Protein of u 26.7 2.9E+02 0.0063 22.6 6.5 63 91-159 16-81 (93)
351 PRK00409 recombination and DNA 26.6 6.7E+02 0.015 27.3 10.9 11 261-271 639-649 (782)
352 PF13080 DUF3926: Protein of u 26.6 46 0.001 24.3 1.7 19 235-254 6-24 (44)
353 KOG2072 Translation initiation 26.5 8.5E+02 0.018 27.7 11.6 51 144-198 665-715 (988)
354 KOG0550 Molecular chaperone (D 26.4 1.6E+02 0.0035 30.7 6.0 82 168-253 287-368 (486)
355 PF12870 Lumazine_bd: Lumazine 26.1 54 0.0012 24.4 2.1 26 168-193 9-34 (111)
356 PF07340 Herpes_IE1: Cytomegal 26.1 7.3E+02 0.016 25.5 10.4 96 143-254 164-260 (392)
357 PF02184 HAT: HAT (Half-A-TPR) 26.0 72 0.0016 21.8 2.4 25 221-247 2-26 (32)
358 cd02682 MIT_AAA_Arch MIT: doma 25.9 2.2E+02 0.0047 22.5 5.5 29 168-196 6-34 (75)
359 PRK00068 hypothetical protein; 25.8 1.3E+02 0.0028 33.9 5.6 34 165-198 930-966 (970)
360 smart00671 SEL1 Sel1-like repe 25.5 1.6E+02 0.0035 17.8 4.0 27 207-233 2-32 (36)
361 COG1422 Predicted membrane pro 25.3 1.9E+02 0.004 27.1 5.7 17 113-129 72-88 (201)
362 KOG2758 Translation initiation 25.3 7.6E+02 0.017 25.4 11.2 88 107-204 74-165 (432)
363 smart00745 MIT Microtubule Int 25.0 2E+02 0.0043 21.2 5.0 26 171-196 11-36 (77)
364 KOG2475 CDC45 (cell division c 24.9 2.8E+02 0.0062 29.6 7.6 66 144-214 168-236 (587)
365 COG1516 FliS Flagellin-specifi 24.9 1.8E+02 0.004 25.4 5.3 51 166-216 29-84 (132)
366 KOG1310 WD40 repeat protein [G 24.7 1.6E+02 0.0034 31.9 5.7 70 175-246 415-484 (758)
367 PF03713 DUF305: Domain of unk 24.6 99 0.0021 25.7 3.6 28 222-249 12-39 (151)
368 PLN03086 PRLI-interacting fact 24.4 4.3E+02 0.0094 28.1 8.8 56 101-180 12-67 (567)
369 PRK14154 heat shock protein Gr 24.3 4.6E+02 0.01 24.3 8.1 11 244-254 139-149 (208)
370 cd00215 PTS_IIA_lac PTS_IIA, P 24.3 2E+02 0.0043 23.4 5.2 48 166-217 13-60 (97)
371 PRK06231 F0F1 ATP synthase sub 24.2 5.3E+02 0.012 23.2 11.4 52 145-196 125-181 (205)
372 PF10414 CysG_dimeriser: Siroh 24.1 2.8E+02 0.0061 20.0 5.8 48 145-196 12-60 (60)
373 TIGR00985 3a0801s04tom mitocho 24.0 5.1E+02 0.011 22.9 10.6 39 209-254 93-133 (148)
374 PF05600 DUF773: Protein of un 23.4 8.4E+02 0.018 25.3 12.6 65 171-261 189-253 (507)
375 TIGR03362 VI_chp_7 type VI sec 23.3 3.7E+02 0.0079 25.9 7.5 60 174-237 105-167 (301)
376 PTZ00429 beta-adaptin; Provisi 23.3 8.1E+02 0.017 26.8 10.8 129 119-256 5-136 (746)
377 PF08969 USP8_dimer: USP8 dime 23.2 1.7E+02 0.0037 23.6 4.6 34 165-198 35-68 (115)
378 PRK04778 septation ring format 23.0 6.1E+02 0.013 26.1 9.5 72 154-233 131-204 (569)
379 COG4715 Uncharacterized conser 23.0 7.9E+02 0.017 26.5 10.3 82 147-231 349-430 (587)
380 KOG0319 WD40-repeat-containing 22.6 6.3E+02 0.014 28.1 9.7 50 222-275 691-741 (775)
381 PRK13800 putative oxidoreducta 22.5 3.7E+02 0.0081 29.2 8.2 71 174-252 794-865 (897)
382 PF12793 SgrR_N: Sugar transpo 22.4 1.3E+02 0.0027 25.1 3.8 26 168-193 70-95 (115)
383 PF08711 Med26: TFIIS helical 22.4 1.2E+02 0.0026 21.2 3.2 23 230-253 26-49 (53)
384 PF10938 YfdX: YfdX protein; 22.2 1.9E+02 0.0041 25.1 5.0 31 166-196 115-145 (155)
385 PRK04863 mukB cell division pr 22.1 1.4E+03 0.03 27.2 16.4 72 181-252 413-505 (1486)
386 smart00770 Zn_dep_PLPC Zinc de 22.0 1.4E+02 0.003 28.2 4.4 34 166-199 112-145 (241)
387 PF12968 DUF3856: Domain of Un 21.9 5.8E+02 0.013 22.8 8.6 64 168-231 9-80 (144)
388 PF11446 DUF2897: Protein of u 21.8 17 0.00037 27.2 -1.3 15 2-16 14-28 (55)
389 PRK12323 DNA polymerase III su 21.7 6.7E+02 0.015 27.5 9.7 74 176-252 211-294 (700)
390 PF02255 PTS_IIA: PTS system, 21.6 1.7E+02 0.0037 23.6 4.3 31 166-196 12-42 (96)
391 COG3387 SGA1 Glucoamylase and 21.0 97 0.0021 32.6 3.4 30 208-238 539-568 (612)
392 KOG1999 RNA polymerase II tran 20.9 22 0.00048 39.6 -1.2 24 98-121 67-90 (1024)
393 PF04826 Arm_2: Armadillo-like 20.9 1.7E+02 0.0037 27.3 4.7 60 184-244 193-252 (254)
394 cd03561 VHS VHS domain family; 20.7 2.9E+02 0.0064 22.8 5.6 22 225-246 57-78 (133)
395 PF04190 DUF410: Protein of un 20.6 2.5E+02 0.0055 26.0 5.7 41 180-220 2-44 (260)
396 PF13934 ELYS: Nuclear pore co 20.6 3.5E+02 0.0076 24.6 6.6 56 170-233 80-135 (226)
397 COG1340 Uncharacterized archae 20.5 8E+02 0.017 24.2 9.2 73 99-175 130-202 (294)
398 PRK05629 hypothetical protein; 20.5 1.6E+02 0.0036 27.3 4.5 64 169-237 194-263 (318)
399 PF06160 EzrA: Septation ring 20.5 8.7E+02 0.019 25.1 10.0 79 147-233 117-200 (560)
400 TIGR01069 mutS2 MutS2 family p 20.4 7.3E+02 0.016 27.0 9.8 10 262-271 628-637 (771)
401 PF15384 DUF4610: Domain of un 20.2 86 0.0019 29.2 2.6 49 26-82 148-197 (197)
402 COG4191 Signal transduction hi 20.1 6.1E+02 0.013 27.4 8.9 27 171-197 405-431 (603)
403 cd02684 MIT_2 MIT: domain cont 20.0 2.1E+02 0.0046 21.9 4.3 30 167-196 5-34 (75)
No 1
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.73 E-value=1.1e-07 Score=82.17 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
+++..|..|..+|++|+|.+||..|+.+....| +|+...+++++++.||...|+.++|+..|+.++..||+..-..+|-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999888655 5788899999999999999999999999999999999998877775
Q ss_pred HH
Q 023077 247 DL 248 (287)
Q Consensus 247 qL 248 (287)
.+
T Consensus 83 Y~ 84 (203)
T PF13525_consen 83 YM 84 (203)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 2
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.69 E-value=5e-08 Score=68.68 Aligned_cols=57 Identities=28% Similarity=0.378 Sum_probs=52.1
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++++|+|.+|+++|++++...|.+.. +++.|+.+|...|+.++|..+|+++...+|+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 58899999999999999998777554 9999999999999999999999999999998
No 3
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.67 E-value=1.6e-07 Score=66.13 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
|..|...+++|+|.+|++.|+.++...|. ..+++++|+.+|...|+.++|+.+|+.+++..|+.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 67899999999999999999999996643 66799999999999999999999999998788863
No 4
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.46 E-value=1.2e-06 Score=75.47 Aligned_cols=80 Identities=29% Similarity=0.311 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+...|+.|+.+|++|+|..||+.||.+.+..| .++..-++|++|+-||..+|+.++|++.++.+++-||...---.|-.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP-~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYP-FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 56789999999999999999999999777555 44555699999999999999999999999999999998776666554
Q ss_pred H
Q 023077 248 L 248 (287)
Q Consensus 248 L 248 (287)
+
T Consensus 89 ~ 89 (142)
T PF13512_consen 89 M 89 (142)
T ss_pred H
Confidence 4
No 5
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=5e-06 Score=62.04 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
..|..|...+..|+|..|+.+|+.++...|.+. .-..+.+.++.+|...|+.++|+.+++.+...+|+.....+|
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 344455555555555555555555554443322 112345555555555555555555555555555555554444
No 6
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.38 E-value=2.4e-06 Score=76.95 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
.++..|..|..++.+|+|.+||+.|+.++...| .++...++++||+.||...|+.+.|+..++..++.||+..-..+|-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 456689999999999999999999999998666 5588889999999999999999999999999999999998777777
Q ss_pred HHHH
Q 023077 247 DLRY 250 (287)
Q Consensus 247 qLLy 250 (287)
.++-
T Consensus 110 Y~~g 113 (243)
T PRK10866 110 YMRG 113 (243)
T ss_pred HHHH
Confidence 7654
No 7
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.36 E-value=1.1e-06 Score=62.19 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHP 237 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HP 237 (287)
.+...+..|..++..|+|.+||..|++++...|.+. .+.+.++.+|...| +.++|+..|++.++-.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 356788999999999999999999999999776554 49999999999999 79999999999885544
No 8
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.32 E-value=7.5e-06 Score=61.08 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+..|..|...+.+|+|..|+..|+.++...|. ++....+.++++.+|...|+.+.|+.+|+.+...+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 56799999999999999999999999987654 34456899999999999999999999999998778884
No 9
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.30 E-value=6.8e-06 Score=75.56 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
...|-.|...|.+|+|..|+..|..++...| .++....+.+.++.+|...|+.++|+.+|+++++.||++...+.|++.
T Consensus 181 ~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 181 NANYWLGQLNYNKGKKDDAAYYFASVVKNYP-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 4567778888888888888888888887665 445556788888888888888888888888888888888888888777
Q ss_pred HHH
Q 023077 249 RYI 251 (287)
Q Consensus 249 LyI 251 (287)
|..
T Consensus 260 L~~ 262 (263)
T PRK10803 260 LNA 262 (263)
T ss_pred Hhc
Confidence 643
No 10
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=7.7e-05 Score=60.75 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
..+.+.+...|.....++..|++..+.+.++.++. ..++++....++|.||.+|...|+.++|++.++++....|++.+
T Consensus 5 ~~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~-~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l 83 (145)
T PF09976_consen 5 QQQAEQASALYEQALQALQAGDPAKAEAAAEQLAK-DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL 83 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH
Confidence 45566788899999999999999999999999887 45566778899999999999999999999999999988899988
Q ss_pred HHHHHH
Q 023077 242 RRQAAD 247 (287)
Q Consensus 242 RqQAKq 247 (287)
+..|+-
T Consensus 84 ~~~a~l 89 (145)
T PF09976_consen 84 KPLARL 89 (145)
T ss_pred HHHHHH
Confidence 877764
No 11
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.11 E-value=2.9e-05 Score=55.31 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 176 ~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
..++.+++|..|++.++.++...|.+.. +.+.++.+|...|+.++|+..|++..+.+|+.....+++.+|
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 4678999999999999999997776444 889999999999999999999999999999999888887765
No 12
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.02 E-value=5.1e-05 Score=64.69 Aligned_cols=73 Identities=26% Similarity=0.350 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+...|..|...+..|+|..|+..|+.++...| .++...++.+.++.+|...|+.++|+.+|+.++..+|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 45679999999999999999999999988665 44556679999999999999999999999999988996554
No 13
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.01 E-value=7.1e-05 Score=61.77 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRR 243 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRq 243 (287)
....+..|......|+|.+|+..|..++...|.+. .+.+.++.+|...|+.++||..|+..+...|+- .++.
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 44567788889999999999999999998665544 489999999999999999999999988777775 7788
Q ss_pred HHHHHHHHh
Q 023077 244 QAADLRYIL 252 (287)
Q Consensus 244 QAKqLLyIL 252 (287)
+++.+|.-|
T Consensus 134 ~~~~~l~~~ 142 (144)
T PRK15359 134 NAQIMVDTL 142 (144)
T ss_pred HHHHHHHHH
Confidence 888877655
No 14
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.95 E-value=7.2e-05 Score=68.88 Aligned_cols=78 Identities=13% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 169 QLMFELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 169 e~~yeaG~aA-LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
...|+.+... +.+|+|.+||..|+.++...|. +..-..+++||+.+|...|+.++|+..|+.+++.||+....-.|-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 6789999986 7789999999999999997765 4455689999999999999999999999999999999766655543
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=0.00017 Score=56.13 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
....+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..++...+.+|+...
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD----PRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3456778899999999999999999988865443 358899999999999999999999999988888776
No 16
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=9.6e-05 Score=49.11 Aligned_cols=66 Identities=26% Similarity=0.401 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+..|...+.+|+|..|+.+|+.++...+.+. .+.+.++.+|...|+.++|+.+|+.....+|...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 46678888888889999988888887655443 6788888888888888889988888875565543
No 17
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.83 E-value=0.00015 Score=61.79 Aligned_cols=67 Identities=21% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|...+.+|+|.+|+..|+.++...|. ++...++++.++.+|...|+.++|+.+++.|..+||+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 457788899999999999999999987664 4666789999999999999999999999999988874
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.68 E-value=0.00016 Score=59.61 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|..++.+|+|.+|+..|..++...|.+. ++.+.|+.++...|+.++|+..|+....-.|+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 66779999999999999999999998666554 59999999999999999999999999976664
No 19
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.00029 Score=61.11 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~H 236 (287)
.+..|..|.+.|..|+|..|+..++..+...|.+. .-..|.++++.+|....+ ..+|+..|+.|+.++
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 34578889999999999999999999999887655 457899999999876543 459999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 023077 237 PSKNIRRQAADLRYIL 252 (287)
Q Consensus 237 Pd~qVRqQAKqLLyIL 252 (287)
|++.-...|+..+..|
T Consensus 121 P~S~y~~~A~~~l~~l 136 (203)
T PF13525_consen 121 PNSEYAEEAKKRLAEL 136 (203)
T ss_dssp TTSTTHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHH
Confidence 9999999999887665
No 20
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.66 E-value=0.00036 Score=65.92 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK 246 (287)
+...+..|...+..|+|..|+..|+.++...|.+ ..+++.|+.+|...|+.++|+..|+.....+|+ +.+..|-.
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSL----AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5577888999999999999999999999976644 458999999999999999999999998877775 88888888
Q ss_pred HHHHHhc
Q 023077 247 DLRYILQ 253 (287)
Q Consensus 247 qLLyILE 253 (287)
.+..-|.
T Consensus 112 ~~~~kl~ 118 (356)
T PLN03088 112 ECDEKIA 118 (356)
T ss_pred HHHHHHH
Confidence 8877773
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.61 E-value=0.00028 Score=51.13 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII---PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~---~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
++......|...+.+|+|.+|+.+|+++++.. +...+.-+.+..-|+.+|...|+.++|+.++++-.
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677889999999999999999999999763 22333347788999999999999999999999865
No 22
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.59 E-value=0.00034 Score=54.48 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (287)
....+..|..++..|+|..|+++|+.++...|.+. .+.+.++.+|...|+.++|+.+|++.+..+|+ +.+.-.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----RYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 45578899999999999999999999998766543 59999999999999999999999999867775 344433
No 23
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00017 Score=53.49 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=36.1
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
++|+|..||.+++++++..|.++ -..+.++||.+|...|+.++||.+|+++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~~ 51 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQKL 51 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHCH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 46788888888888887666532 2346666788888888888888888764
No 24
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.00056 Score=45.39 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+..|...+..|+|..|+.+|+.++...+... .+...++.+|...|+.++|+.+++.+...+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3467778888889999999999999998766554 6889999999999999999999999885555
No 25
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.52 E-value=0.0011 Score=59.93 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC------------------hHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR------------------HADCIALYKQ 231 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq------------------~EkAIALCQ~ 231 (287)
..|..|...|..|+|..|+..++.++...|.+.. -..|.+.+++++...|+ ..+|+..++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~ 149 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK 149 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH
Confidence 4688999999999999999999999998876644 47899999998766652 3689999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHh
Q 023077 232 LESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 232 L~~~HPd~qVRqQAKqLLyIL 252 (287)
|+++||+++-...|+..|..|
T Consensus 150 li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHH
Confidence 999999999999999866554
No 26
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.51 E-value=0.00014 Score=44.78 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+++++++.+|...|+.++|+.+++.++++||++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999974
No 27
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.49 E-value=0.00079 Score=63.12 Aligned_cols=80 Identities=24% Similarity=0.251 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+...|+.|++.|+.|+|.+||..||.+...+| .++..-++|+-|+.||...|+.+.|+......+..||...=...|-.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 67799999999999999999999999876555 56666899999999999999999999999998888888766566555
Q ss_pred H
Q 023077 248 L 248 (287)
Q Consensus 248 L 248 (287)
|
T Consensus 113 l 113 (254)
T COG4105 113 L 113 (254)
T ss_pred H
Confidence 4
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.0023 Score=60.50 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..++..|..||..|+|..||++|..++...|.+. .+.+.++.+|...|+.++|+..|+.++...|+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3467789999999999999999999999777653 58899999999999999999999999877775
No 29
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.0012 Score=54.84 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
..|+.|-.--..|+..+||.+++.++.. .......-++.|.|+.+|...|+.++|+++.++....||+.+.....+-+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4688888888899999999999999884 44455556899999999999999999999999999888987776666644
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.43 E-value=0.0012 Score=52.65 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...+..|...+.+|+|..|++++++++...+.+. .+.+.++.+|...|+.++|+.+|+...
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3445556666666777777777766666544322 366666666667777777777776666
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.40 E-value=0.00068 Score=61.24 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...|..|..++..|+|..|+..|+.++...|.+ ..+++.|+..|...|+.++|+.+++.+. .+|+
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~~ 100 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLL-SRPD 100 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHh-cCCC
Confidence 4456666777777777777777777777654433 2466667777777777777777777776 4543
No 32
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.0034 Score=50.50 Aligned_cols=73 Identities=23% Similarity=0.329 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-------NHPSKNIRRQA 245 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-------~HPd~qVRqQA 245 (287)
..+...+..|+|..|+.++..++...|.+-. +...|..+|.+.|+...|+..|+++.. ..|.+.++.-.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 4456788999999999999999998777655 999999999999999999999988752 24777777776
Q ss_pred HHHH
Q 023077 246 ADLR 249 (287)
Q Consensus 246 KqLL 249 (287)
+.+|
T Consensus 143 ~~il 146 (146)
T PF03704_consen 143 REIL 146 (146)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6654
No 33
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.39 E-value=0.0027 Score=51.69 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.....|..|..++.+|+|..|++.|+.++... ++..+...+.+.||..|...|+.++|+++++.+.
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 35567889999999999999999999999865 4556667899999999999999999999997754
No 34
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.00099 Score=62.63 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=34.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
|+.-|.+|+|..|...|..++...|. ++--.++.+=|+++....|++++|-+.++++++++|+..-.+.|+..+
T Consensus 185 Ge~~y~qg~y~~Aa~~f~~~~k~~P~-s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 185 GESLYAQGDYEDAAYIFARVVKDYPK-SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHhcccchHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 44444444444444444443332221 111234444444444555555555555555555555555555555443
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.34 E-value=0.0018 Score=53.63 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023077 150 VRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (287)
Q Consensus 150 v~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALC 229 (287)
++..|.+..+ +..+...+...+..|...+.+|+|..|+.+|..++...+.+ ..-..+..-|+.+|...|+.++|+.+|
T Consensus 18 ~~~~l~~~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 18 VADILLRILP-TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred chhhhhHhcc-CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3444544432 34444567888999999999999999999999999875432 222458899999999999999999999
Q ss_pred HHHHHhCCC
Q 023077 230 KQLESNHPS 238 (287)
Q Consensus 230 Q~L~~~HPd 238 (287)
++....+|.
T Consensus 96 ~~Al~~~~~ 104 (168)
T CHL00033 96 FQALERNPF 104 (168)
T ss_pred HHHHHhCcC
Confidence 998855554
No 36
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.27 E-value=0.0027 Score=52.99 Aligned_cols=74 Identities=24% Similarity=0.352 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
...+...|..|...+..|+|.+|+.+|+.++...+... .-..+...|+.+|...|+.++|+.+|++.+..+|+.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 44566789999999999999999999999998654322 235689999999999999999999999999777764
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.23 E-value=0.0015 Score=62.39 Aligned_cols=68 Identities=24% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|..++.+|+|.+|+..|..++...|. ..++++.|+.+|...|+.++|+..++++...+|+.
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 89 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN----DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK 89 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh
Confidence 345788888999999999999999998875444 33688999999999999999999999988666654
No 38
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0025 Score=59.98 Aligned_cols=71 Identities=15% Similarity=0.325 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+..|+.+..+|..|+|..|.+.|-..+...|.++ .-..+++||-.+|.+.|+.+.|..+|-...+.||...
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 4499999999999999999999999999777554 3478999999999999999999999999999999764
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.19 E-value=0.0019 Score=56.64 Aligned_cols=75 Identities=19% Similarity=0.109 Sum_probs=42.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCHHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH----PSKNIRRQAADLRY 250 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H----Pd~qVRqQAKqLLy 250 (287)
|..-=.+|+|.+||..+..+..+.+ +.+ ++...++.||-+.|+.+.|++.++.-+..+ -+.+++++|+.+|.
T Consensus 76 G~~~Q~~g~~~~AI~aY~~A~~L~~-ddp---~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 76 GECCQAQKHWGEAIYAYGRAAQIKI-DAP---QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCC-CCc---hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 3333344455555555555444332 222 355566666666666666666666555455 56677777777777
Q ss_pred Hhc
Q 023077 251 ILQ 253 (287)
Q Consensus 251 ILE 253 (287)
.|.
T Consensus 152 ~l~ 154 (157)
T PRK15363 152 QLS 154 (157)
T ss_pred Hhh
Confidence 664
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.18 E-value=0.0022 Score=60.18 Aligned_cols=72 Identities=22% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+.+.++..++.|..-|++|+|.+|-..||+|++..|.+.. ++..+|..|+..|+.+.|-.-|++-.+-+|+.
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~ 102 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKLGENDLADESYRKALSLAPNN 102 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc
Confidence 3455677899999999999999999999999997666665 99999999999999999999999987677753
No 41
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.16 E-value=0.013 Score=51.31 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKA-YGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aA-LerGd--Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
....+..|... +..|+ |.+|+++|++++...|.+.. +++.|+++|...|+.++|++.|+++.+..|...
T Consensus 107 ~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 107 AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVT----ALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 44556666654 56677 69999999999997777665 999999999999999999999999875555533
No 42
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.08 E-value=0.0041 Score=61.70 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+.+....+.|..+|.+|+|..||..|++++...|. + .....++.||...|+.++||..|...+...|+
T Consensus 124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~ 192 (615)
T TIGR00990 124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD--P---VYYSNRAACHNALGDWEKVVEDTTAALELDPD 192 (615)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--h---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Confidence 345666778888889999999999999988886663 2 36777888888888888888888888865565
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.07 E-value=0.0097 Score=47.43 Aligned_cols=67 Identities=22% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.++++.....|+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQR----PESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 345667888899999999999999988866543 3578889999999999999999999887554543
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.97 E-value=0.0063 Score=53.44 Aligned_cols=80 Identities=9% Similarity=0.026 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQ 244 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQ 244 (287)
++.+..|.-|-..+++|+|..|+.+|+-+|...|.+.. -.|.|+.+|+..|+.++||..|..-..-.| +|..-..
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 45667999999999999999999999999998887777 899999999999999999999998764444 3455555
Q ss_pred HHHHH
Q 023077 245 AADLR 249 (287)
Q Consensus 245 AKqLL 249 (287)
+-..+
T Consensus 109 ag~c~ 113 (157)
T PRK15363 109 AAECY 113 (157)
T ss_pred HHHHH
Confidence 54443
No 45
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.0021 Score=47.72 Aligned_cols=58 Identities=24% Similarity=0.394 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
.-.|..|...|..|+|.+||.+|.. ....+.+ ..+++.++.||...|+.++||..+++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~----~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN----PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH----HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999998 4433322 46888999999999999999999875
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.92 E-value=0.0053 Score=56.08 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|..|++.|+.+++..|.+. .+.+.++.+|...|+.++|+..|+.....+|+.-
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 45678889999999999999999999999766654 4899999999999999999999999998888754
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.82 E-value=0.0091 Score=54.04 Aligned_cols=70 Identities=24% Similarity=0.296 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
...+..|...+.+|+|.+|+++|+.++...|.+. ..+...|+.+|...|+.++|+.+++.+...+|+..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYL---SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 3455667777777777777777777776544322 245566777777777777777777776656666544
No 48
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.77 E-value=0.0098 Score=59.84 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
+...++.|.+.+..|+|..||+.|+.++++.|.+.. ...+++.|+.+|...|+.++|++.+++-+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445788899999999999999999999997665432 124699999999999999999999999983
No 49
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.73 E-value=0.0034 Score=42.35 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+++.|+.+|...|+.++|+.+|+++++.+|+.-
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4789999999999999999999999999999864
No 50
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.70 E-value=0.0046 Score=43.85 Aligned_cols=43 Identities=21% Similarity=0.171 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 209 QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
++-||.||...|+.+.|..+-+.+. .++++..+..|+.||.-|
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~~l 44 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLAQL 44 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHhcC
Confidence 5679999999999999999999999 899999999999998653
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.69 E-value=0.027 Score=49.25 Aligned_cols=68 Identities=15% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCC--hHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNR--HADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Yqa~Gq--~EkAIALCQ~L~~~HPd~ 239 (287)
.+.-+..|...+..|+|.+|+..|++++...|.+. .+...++++ |...|+ .++|+.++++....+|+.
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~----~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA----ELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 55678889999999999999999999999777654 489999998 578888 599999999999888864
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.65 E-value=0.011 Score=61.67 Aligned_cols=76 Identities=11% Similarity=-0.064 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+...+..|...-+.|+|.+|++.|++++...| ... +++++++.+++..|+.++|.+.|++.+ ..-.+-+++.+..
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~---~~~~~~a~~l~~~G~~~~A~~~~~~a~-~~~~~~~~~~~~~ 228 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHP-EFE---NGYVGWAQSLTRRGALWRARDVLQAGL-DAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcH---HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhhCcchHHHHHH
Confidence 77889999999999999999999999998222 333 699999999999999999999999999 4556666776666
Q ss_pred H
Q 023077 248 L 248 (287)
Q Consensus 248 L 248 (287)
+
T Consensus 229 ~ 229 (694)
T PRK15179 229 L 229 (694)
T ss_pred H
Confidence 5
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.63 E-value=0.022 Score=54.12 Aligned_cols=70 Identities=17% Similarity=0.064 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+...+..|..++..|+|..|.+.+.++....|.+ .-..+..|.++...|+.+.|..+++...+.+|++.
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~----~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~ 152 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP----VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN 152 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc
Confidence 34455666666666666666666666655533221 23455556666666666666666666555556553
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.56 E-value=0.017 Score=58.84 Aligned_cols=66 Identities=15% Similarity=0.154 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+..|...+.+|+|.+|+..|+.++...|.+. .+...|+.+|...|+.++|++.|+.+...+|+.
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445557777777777777777777776544332 366667777777777777777777766666654
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.56 E-value=0.0098 Score=59.04 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|..|+..|++++...|.+. .+.+.|+.+|...|+.++|+.+|+.....+|+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~ 466 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI----FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45667778888888999999999998888665443 477888888889999999999988887677763
No 56
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.52 E-value=0.014 Score=62.99 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
..+..-.|..|.....+|+|..|+..|+.|++..|.+ ..+++.|+.+|...|+.++|+..|++..+.+|+..
T Consensus 41 ~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n----~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~ 112 (987)
T PRK09782 41 HFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDN----IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDA 112 (987)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 4556678899999999999999999999999977777 35889999999999999999999999997777543
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=96.47 E-value=0.013 Score=58.21 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+..|...+.+|+|.+|+..|+.++...|.+.. +.+.|+.+|...|+.++|+..|++....+|+.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 3445677778899999999999999987655443 78899999999999999999999988777874
No 58
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.46 E-value=0.061 Score=46.65 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC---------------hHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR---------------HADCIALYKQL 232 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq---------------~EkAIALCQ~L 232 (287)
.+..|..|-+-|.+|+|..|+..++..+.++|.+-.. .-|.+...++|..... ..+|...++.|
T Consensus 47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~l 125 (142)
T PF13512_consen 47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQL 125 (142)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHH
Confidence 4677899999999999999999999999988866543 4588888999999887 89999999999
Q ss_pred HHhCCCHHHHHHHHH
Q 023077 233 ESNHPSKNIRRQAAD 247 (287)
Q Consensus 233 ~~~HPd~qVRqQAKq 247 (287)
+.+||+++-...|+.
T Consensus 126 v~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 126 VRRYPNSEYAADARK 140 (142)
T ss_pred HHHCcCChhHHHHHh
Confidence 999999999888874
No 59
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.44 E-value=0.029 Score=50.31 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+..|...+++|+|.+|+++|++++...+.........++.++..|...|+.++|+.+|+++....|
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 345667888999999999999999999877765555556777899999999999999999999763444
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.42 E-value=0.021 Score=58.96 Aligned_cols=89 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
....+..|.....+|+|.+|++.|++++...|.+.. +.+.+++++.+.|+.++|.++++.++..+|+...-+.-++
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 345677788888999999999999999987765554 8889999999999999999999999999999888888888
Q ss_pred HHHHhcCCCCCCC
Q 023077 248 LRYILQAPKLKIS 260 (287)
Q Consensus 248 LLyILEAPkLkrp 260 (287)
.+.+=.-|+|.+-
T Consensus 469 ~~~~~~~~~l~~~ 481 (765)
T PRK10049 469 ARDVHHMAELRIA 481 (765)
T ss_pred HHHhccCceEEEE
Confidence 8887777777544
No 61
>PRK15331 chaperone protein SicA; Provisional
Probab=96.41 E-value=0.024 Score=50.28 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hH----------------------------HHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GG----------------------------EIQIWLAMA 215 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GG----------------------------EAQmwLAtA 215 (287)
++.+..|..|-..|.+|+|..|..+|.-.|-..+.+.+. |. ..-+.++.+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 345567777777888888888877777777655555442 00 123344555
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 216 YEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 216 Yqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
|-..|+.++|+..++..+.+.-+..++++|+.+|..|..
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHc
Confidence 555566666666666666667788999999999998864
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.026 Score=58.76 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCCC-chH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTF-FGG-----EIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~-----~~S~-lGG-----EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
+++..|+.+-.-++.|+|.+||++|+++..++. ..+. .+. -++.+||.+|+-.|++++|.++|..++++
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 588999999999999999999999999933222 2222 233 36788999999999999999999999843
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.35 E-value=0.039 Score=59.42 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.....|..++.+|+|.+|++.|+.++...|.+. .+.+.|+.+|...|+.++|+++|+++...+|+.-
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~----~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSV----WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 345678888999999999999999999766543 4899999999999999999999999987788643
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.34 E-value=0.026 Score=53.63 Aligned_cols=61 Identities=23% Similarity=0.218 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+...+..|..++.+|+|++|.++||++++..|.+ ...++|+.+|.+.|++++|..+|++=.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567788999999999999999999999854332 356789999999999999999998654
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.28 E-value=0.018 Score=58.76 Aligned_cols=69 Identities=10% Similarity=0.104 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
...+..|..++.+|+|.+|+..|+.++...|.+. .+.+.++.+|...|+.++|++.|+.+...+|++..
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 3456668888888999999999999888655443 47888888888899988898888888667776543
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.24 E-value=0.026 Score=51.58 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...|..|......|++..|+..|.++++..|.+ ..+.+.++.+|...|+.++|+..|++..+..|+..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 4558889999999999999999999999976654 35999999999999999999999999987778754
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.24 E-value=0.024 Score=60.32 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+|.+|...|+.++||.+|+++....|+
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3334455666666666666666666655555
No 68
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.23 E-value=0.033 Score=59.97 Aligned_cols=66 Identities=15% Similarity=0.108 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+..|..++.+|+|.+|++.|++++...|.+. .+.+.|+.+|...|+.++|+..|++..+.+|+..
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34568889999999999999999999876543 5899999999999999999999999997888754
No 69
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.23 E-value=0.031 Score=53.67 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|...+.+|+|.+|+.+|+.++...|.+. .+.+.++.+|...|+.++|+..|++....+|+
T Consensus 162 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~ 225 (899)
T TIGR02917 162 KLGLAQLALAENRFDEARALIDEVLTADPGNV----DALLLKGDLLLSLGNIELALAAYRKAIALRPN 225 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 44445555566666666666666555443332 35666666666666666666666666544553
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=96.17 E-value=0.053 Score=53.85 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
...+..|...+..|+|.+|+.+|+.++...|.+.. +.++++.+|...|+.++|+++|+++...+
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~----~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA----AGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 34566788899999999999999999998776543 45566666777899999999999887554
No 71
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.14 E-value=0.054 Score=51.49 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+..++.+|+|.+|.+.|+.+.+..|.+. .+..+++.+|...|+.+.|+.+.+.|.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555555555555555433332 255555555555555555555555555
No 72
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.11 E-value=0.018 Score=35.48 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~ 200 (287)
+..+..|...+..|+|.+|++.|++++...|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34556666666666666666666666665553
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.06 E-value=0.029 Score=49.72 Aligned_cols=78 Identities=21% Similarity=0.066 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP-SKNIRRQAADLR 249 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP-d~qVRqQAKqLL 249 (287)
...-+-..++.|++.++.+.|..+....+.+.. ++..++.+|...|+.++|+.+++++.+.+| ||.+.-.=..+|
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 344466777889999988888888876655554 778899999999999999999999997788 677776655555
Q ss_pred HHh
Q 023077 250 YIL 252 (287)
Q Consensus 250 yIL 252 (287)
...
T Consensus 259 ~~~ 261 (280)
T PF13429_consen 259 EQA 261 (280)
T ss_dssp T--
T ss_pred ccc
Confidence 443
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.01 E-value=0.025 Score=59.15 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
-+....+++.|.+|+...+.++...|. ...+++.++++++..|++++|+++|+++...||+
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 344444555555555555555542222 2258899999999999999999999999877776
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.97 E-value=0.13 Score=48.90 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
-.+..++.+|+|.+|++.++.+.+..|.+. .+..+++.+|...|+.++|+.++..|.+..+
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 336777888888888888888777555444 4788888888888888888888888884444
No 76
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.95 E-value=0.071 Score=50.67 Aligned_cols=61 Identities=26% Similarity=0.329 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
...+.....+.+|+|+.+++.|+..+...|-+.+ ++..|-.+|..+|+...||..|++|.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~----~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEP----AYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3455666778899999999999999998888877 899999999999999999999999983
No 77
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.92 E-value=0.033 Score=57.50 Aligned_cols=65 Identities=17% Similarity=-0.027 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.+..|.....+|++.+|++.|++++...|.+. .+++.|+.+|...|+.++|+++|++....+|+.
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ----GLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 45678888899999999999999999877774 599999999999999999999999999889985
No 78
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.89 E-value=0.051 Score=45.36 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR--------------HADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq--------------~EkAIALCQ~L~ 233 (287)
+...+..|...+..|+|.+|+.+|++++...|.+ ..+...++.+|...|+ .++|+.+++...
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999976654 3477888999988888 356666666666
Q ss_pred HhCCC
Q 023077 234 SNHPS 238 (287)
Q Consensus 234 ~~HPd 238 (287)
...|+
T Consensus 148 ~~~p~ 152 (172)
T PRK02603 148 RLAPN 152 (172)
T ss_pred hhCch
Confidence 43433
No 79
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.81 E-value=0.054 Score=58.70 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|....+.|+|.+|+..|+.++...|.+. .+++.|+.+|...|+.++|+++|+.....+|+
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~----~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS----NYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3445555555555555555555555555443332 25555555555555555555555555444443
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.79 E-value=0.031 Score=52.83 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=55.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..|+.++..|+|..||..|-++....|.+.. +.+.|..||+..|+.+.|-.-|.+..+-.|+.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~ 167 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQLGRFDEARRAYRQALELAPNE 167 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHccChhHHHHHHHHHHHhccCC
Confidence 3799999999999999999999996666655 99999999999999999999999988666653
No 81
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.72 E-value=0.057 Score=48.46 Aligned_cols=63 Identities=22% Similarity=0.163 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
....|...+.+|+|.+|++.++++++..|.+ ..+...|+.+|...|+.++|+.+|++.....|
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~----~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDD----AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3456778899999999999999999977666 34888999999999999999999999885554
No 82
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.65 E-value=0.058 Score=57.43 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
..+..|......|+|+.||++|+++++..|.+. .+.+.|+++|...|+.++|+..++++....|. .+.. ..+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~--~~~~-l~la 176 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERDPT--VQNY-MTLS 176 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc--hHHH-HHHH
Confidence 344456677788999999999999999888774 47789999999999999999999999977666 3333 5556
Q ss_pred HHh
Q 023077 250 YIL 252 (287)
Q Consensus 250 yIL 252 (287)
++.
T Consensus 177 yL~ 179 (822)
T PRK14574 177 YLN 179 (822)
T ss_pred HHH
Confidence 665
No 83
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.1 Score=50.51 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=68.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH----HHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR----QAADLR 249 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq----QAKqLL 249 (287)
.+.+-.+-|+|..||+-+|.++.+.|..++ ++.-|-+||-+.|+.++||..|++-..-.|+-++-+ +|.+.|
T Consensus 121 RAAAy~~Lg~~~~AVkDce~Al~iDp~ysk----ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 121 RAAAYSKLGEYEDAVKDCESALSIDPHYSK----AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcChHHHH----HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 344556789999999999999997777766 777899999999999999999999887788877543 444444
Q ss_pred HHhcCCCCCCCcccc---ccc-CCCCcccc
Q 023077 250 YILQAPKLKISQEEM---VTI-PLIGSSYD 275 (287)
Q Consensus 250 yILEAPkLkrp~eW~---v~I-PdL~~~~d 275 (287)
.....+.-.+....+ +.. |++...+.
T Consensus 197 ~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~ 226 (304)
T KOG0553|consen 197 NEPKSSAQASGSFDMAGLIGAFPDSRSMFN 226 (304)
T ss_pred cCCCcccccccchhhhhhccCCccchhhhc
Confidence 443322233333322 223 77766664
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.36 E-value=0.097 Score=51.79 Aligned_cols=84 Identities=26% Similarity=0.222 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023077 145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (287)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek 224 (287)
+|.--+..+|++--. |..+.+.|+=..+.++.++.+-+.+.|+.+|.+|++..+...+ |-|.|...+.+.|++++
T Consensus 158 ~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~g~y~~ 232 (389)
T COG2956 158 EKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAKGDYQK 232 (389)
T ss_pred HHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhccchHH
Confidence 333344444443221 3344455555555666666666666666666666654444444 55556666666666666
Q ss_pred HHHHHHHHH
Q 023077 225 CIALYKQLE 233 (287)
Q Consensus 225 AIALCQ~L~ 233 (287)
|+..++.+.
T Consensus 233 AV~~~e~v~ 241 (389)
T COG2956 233 AVEALERVL 241 (389)
T ss_pred HHHHHHHHH
Confidence 666666655
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.30 E-value=0.19 Score=41.52 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-------HcCChHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-------ANNRHADCIALYK 230 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq-------a~Gq~EkAIALCQ 230 (287)
+...+..|...+..|+|.+|+..++.++...+.. +.....++.+|. ..|+.+.|+..|.
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 3467889999999999999999999999875544 356777777777 8888885555554
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.22 E-value=0.14 Score=45.47 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIR 242 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVR 242 (287)
.......++..|+|.++++.|+.+....+.. ....+.+.++..|...|+.++|+.+|++..+.+|+ +.++
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~ 183 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDAR 183 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3445566778888988888888877533322 22346667778888889999999999888878886 5554
No 87
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.20 E-value=0.19 Score=41.70 Aligned_cols=63 Identities=21% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+..|..-..-|+|.+|+..|+.++...|. ....+.++..+|+++...|+.++|++++-...
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~-~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPD-DELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4677888889999999999999999987654 33456799999999999999999999998755
No 88
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.20 E-value=0.062 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++.+.|+.+|...|+.++|+..|++....+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57899999999999999999999999977775
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.18 E-value=0.095 Score=52.89 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
....|..++.+|+|.+|+..|++|+..-+ + ..+.++|+.+|.-.|+.++|+..|++-..-.|.....-|.+++.+
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~p--s---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~~~~~~f 497 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLEM--S---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYWIENLVF 497 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHHHHhccc
Confidence 33468888899999999999999999765 2 369999999999999999999999887768898888888887643
No 90
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.06 E-value=0.12 Score=40.15 Aligned_cols=77 Identities=12% Similarity=0.034 Sum_probs=57.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCch-----HHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHHHHHH
Q 023077 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----GEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRRQAAD 247 (287)
Q Consensus 176 ~aALerGdY~qAIelLE~Ale~~~~~S~lG-----GEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRqQAKq 247 (287)
..++..|+|..|++.|..+..........+ .-+.+.++..+...|+.++|+..++.-+ ....|...=.+|-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 578999999999999999987766554433 4678889999999999999999998765 23445555555555
Q ss_pred HHHHh
Q 023077 248 LRYIL 252 (287)
Q Consensus 248 LLyIL 252 (287)
.++.|
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55544
No 91
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.5 Score=47.29 Aligned_cols=66 Identities=17% Similarity=0.024 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..++.+.--+..+.|..||++..++++..+.|.. +.+--.+||.+.|+.+.|+..+++.++-.|+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 3667778888999999999999999998888887 99999999999999999999999999788865
No 92
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.81 E-value=0.5 Score=37.98 Aligned_cols=74 Identities=19% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL 228 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL 228 (287)
.++.....|..+...|+-..+++.|+.++......--.+ ..+...|+.+|...|+.++|+.+
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 466678888999999999999999999998887553322 25667788899999999999999
Q ss_pred HHHHHHhCCCHH
Q 023077 229 YKQLESNHPSKN 240 (287)
Q Consensus 229 CQ~L~~~HPd~q 240 (287)
|+.++..+|..+
T Consensus 85 ~~~~l~~dP~~E 96 (146)
T PF03704_consen 85 LQRALALDPYDE 96 (146)
T ss_dssp HHHHHHHSTT-H
T ss_pred HHHHHhcCCCCH
Confidence 999998888755
No 93
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.73 E-value=0.074 Score=33.25 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~ 199 (287)
+..+..|..-+.+|+|.+||..|+.+++..|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4456677777777777777777777776655
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.65 E-value=0.55 Score=47.02 Aligned_cols=62 Identities=24% Similarity=0.269 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..-..+..|.-+|.++.|++|-++||.++..-+.. ....||+-+|...|+.++|-..++.-.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-----~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-----SDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-----hhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 35678889999999999999999999998855443 367999999999999999998887643
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.48 E-value=0.16 Score=51.63 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+=...-..+.|+|.+|+++|+.....+.-.. .+.-..|..|...|+.++|..+|+.|++++|+.-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKL----AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 34444556788999999999999666444333 3788899999999999999999999999998754
No 96
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.38 E-value=0.083 Score=32.17 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPR 200 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~ 200 (287)
..|..|...+..|+|.+|++.|+.++...|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4789999999999999999999999998875
No 97
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.34 E-value=0.099 Score=35.18 Aligned_cols=41 Identities=22% Similarity=0.096 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAt 214 (287)
..+..|......|++++|++.|+++++..|.+.. +++.|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence 3567789999999999999999999998886654 6666654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.46 Score=49.11 Aligned_cols=70 Identities=20% Similarity=0.166 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+.++..-..|..+|..|+|..||.++.+++...|.+-. ..=-.|-||-..|....|++-|++-++-+|+.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKLGEYPEALKDAKKCIELDPNF 425 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH
Confidence 34666667799999999999999999999997765544 55557889999999999999888888666653
No 99
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.25 E-value=0.8 Score=41.88 Aligned_cols=81 Identities=21% Similarity=0.258 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC------CCCCch----HHHHHHHHHHHHHcCChH---HHHHHHH
Q 023077 165 RATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIP------RPTFFG----GEIQIWLAMAYEANNRHA---DCIALYK 230 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerG-dY~qAIelLE~Ale~~~------~~S~lG----GEAQmwLAtAYqa~Gq~E---kAIALCQ 230 (287)
...|...|+.|..++.++ +|..|+.+|+.+.+.++ ..++.+ ..+...||+||-..+..+ +|+.+-+
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456889999999999999 99999999999998842 334444 356778999999988754 5667777
Q ss_pred HHHHhCCC-HHHHHHH
Q 023077 231 QLESNHPS-KNIRRQA 245 (287)
Q Consensus 231 ~L~~~HPd-~qVRqQA 245 (287)
.+...||+ +.+.-.+
T Consensus 112 ~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLK 127 (278)
T ss_pred HHHHhCCCCcHHHHHH
Confidence 78778888 5555333
No 100
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.22 E-value=0.22 Score=45.25 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH-HH
Q 023077 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI-RR 243 (287)
Q Consensus 168 ae~~yeaG~aALer-GdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV-Rq 243 (287)
++...+.|...-.. |+|..||++++.|+.... .......+....+|..|...|+.++||.+|+++...+-+..+ +-
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44555556655566 799999999999998765 334556788889999999999999999999999855544332 33
Q ss_pred HHHH
Q 023077 244 QAAD 247 (287)
Q Consensus 244 QAKq 247 (287)
.+++
T Consensus 194 ~~~~ 197 (282)
T PF14938_consen 194 SAKE 197 (282)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4554
No 101
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.94 E-value=0.058 Score=35.40 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=28.4
Q ss_pred HHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023077 191 LEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (287)
Q Consensus 191 LE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIA 227 (287)
|+++++..|.+.. +...|+.+|...|+.++|++
T Consensus 2 y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 6778887777666 99999999999999999974
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=93.83 E-value=0.27 Score=48.57 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+......+...+.+|+|..|++.+.+++...|..-. .+..||.+|...|+.++|+.....+-
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~----~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE----TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666777888899999999999999999996665544 99999999999999999997665443
No 103
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=93.71 E-value=0.27 Score=48.83 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+....-.|.-++.+|+|..||+.||.+++..+.. -+++---|..||...|+.++.+..-+.-...++++.+
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y---l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEY---LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 4456778999999999999999999999865544 3578999999999999999998877776656666554
No 104
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.61 E-value=0.75 Score=43.19 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~-~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (287)
.+.+-|.-|+...|...||++.+..| ..|+ --.+.++++|.+.|+..+|-+-++.+++.+|+++-+-
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP---DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCccCCC---CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 34444444555555555555554443 2233 2456777888888888888888888887778877654
No 105
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.35 E-value=0.13 Score=40.60 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~ 198 (287)
...|..+...+..|+|..|++.|-.++...
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 445555555555555555555555555433
No 106
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.31 E-value=0.17 Score=46.02 Aligned_cols=68 Identities=25% Similarity=0.227 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESN 235 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~ 235 (287)
+-..|..+-..|.++++..||..|+.|+...- ......+++..-++..|... |+.++||.+|++-.+-
T Consensus 74 Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 74 AAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44567778888999999999999999998654 33455678899999999999 9999999999987643
No 107
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.31 E-value=0.17 Score=54.70 Aligned_cols=58 Identities=28% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
|..|.=-++.|.|.+|++.+++++...|.+.+ +++-|++-|+..|++++|...-.++.
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D----~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAPDNLD----ARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh----hhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 33444444444455555555554444444444 44445555555555554444444433
No 108
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.72 Score=44.75 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023077 149 RVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (287)
Q Consensus 149 rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL 228 (287)
.||+=|.+..-. .-+..+..+..+++.|+|..|...|..++...+.+ +.+.+.||.+|-..|+.+.|-++
T Consensus 121 qlr~~ld~~~~~------~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 121 QLRQFLDKVLPA------EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHHHHhcCh------HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHH
Confidence 355556655552 22336778899999999999999999999977777 45999999999999999999999
Q ss_pred HHHHH
Q 023077 229 YKQLE 233 (287)
Q Consensus 229 CQ~L~ 233 (287)
+-+|-
T Consensus 191 L~~lP 195 (304)
T COG3118 191 LAALP 195 (304)
T ss_pred HHhCc
Confidence 98876
No 109
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.97 E-value=0.24 Score=30.69 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~ 199 (287)
+..+..|..-...|+|..|+..|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456667777777777777777777776554
No 110
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.67 E-value=0.26 Score=34.44 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077 210 IWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (287)
Q Consensus 210 mwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (287)
|-++.+|...|+.++|+.+|++++..+|+ +.+.-+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 36 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL 36 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 46899999999999999999999988885 333333
No 111
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.57 E-value=0.44 Score=51.71 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (287)
.+.++-.+-.+|.+|++.+|..+|..++.+.|.+.- +...|++.|+..|++++|.... .|. .|-+|+-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~-llA-AHL~p~d~ 207 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFW-LLA-AHLNPKDY 207 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHH-HHH-HhcCCCCh
Confidence 456788888899999999999999999998887765 9999999999999999997643 333 57776543
No 112
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.54 E-value=1.8 Score=39.23 Aligned_cols=67 Identities=18% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.....++.|..-|..|+|..|+.+|++++.... .=..+-..+...|..|+...|+.++.+.+|=+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 355678899999999999999999999976443 2256677899999999999999999999999887
No 113
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.06 E-value=0.43 Score=41.09 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD 224 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek 224 (287)
+...++.++++|..|+|+-|++++.-++...|.+. +++-++|.||.+.|....
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHHHhcc
Confidence 56789999999999999999999999998666554 499999999998886654
No 114
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.05 E-value=0.5 Score=29.40 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++.+.++.+|...|+.++|+..|++-++-.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999998866664
No 115
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=91.78 E-value=0.77 Score=36.86 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALY 229 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALC 229 (287)
-+++...+.|+..|.+-...+||....+++...... +.-=.+.=+|++||+--|+..++++.-
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999866543 223366778999999999999998764
No 116
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=1.7 Score=41.76 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---h
Q 023077 106 RRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRA--TAQLMFELGQKAY---G 180 (287)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e--~ae~~yeaG~aAL---e 180 (287)
.-+...+--..+.++.+..||.++..+-.+.++=.==-+-|-..=+-..+..|=..|.|+. ..+...--|.+.+ +
T Consensus 126 ~~~~a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 126 ADPLAQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred hcccccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 3344444445566666677777776666554443333333433333444444444454442 1222222222222 2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+-+=.++..+|.+++...+.+.+ ++++|+++|.-.|+..+|++..+.|.+..|...
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~ir----al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIR----ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 33455677788888886666655 999999999999999999999999997666543
No 117
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.57 E-value=0.44 Score=26.11 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
+.+.++.+|...|+.++|+..++..++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455666666677777777766666653333
No 118
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.44 E-value=0.33 Score=31.59 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 209 QIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...|+.+|...|+.++||.+|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999843
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=0.84 Score=47.24 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHHHHcC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANN 220 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG------------------------------EAQmwLAtAYqa~G 220 (287)
.-+.|-+||..|||.+||.+|..++.+.|.|.-++. .+.--+.-|+.+.|
T Consensus 5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence 446799999999999999999999999998765543 45666788999999
Q ss_pred ChHHHHHHHHHHHHhCCCHHH
Q 023077 221 RHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qV 241 (287)
+.++|+.-|..=.+.-|+-.+
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~ 105 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQ 105 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHH
Confidence 999999999876656676544
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=90.76 E-value=0.96 Score=46.34 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
|...++.+++.+|++.|.+++...|.... .++-++.+|...|+.++||.+-+..+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 34445555555555555555554444322 45555555555555555555555544
No 121
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=90.62 E-value=1.2 Score=35.72 Aligned_cols=56 Identities=25% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023077 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq 221 (287)
..+...+...+..|..|+.-|||..|-..+.++... .+.-.-..+.-|+|=+..||
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~----~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL----SDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHcCC
Confidence 445566888999999999999999999999998664 22222355666676666664
No 122
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=1 Score=46.00 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.++..=+.|-.||.+|.|+.|-+.+..++.+.|.+...-....+-.|+++-..|+..+||+-|..-.
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 3444556799999999999999999999999999988888888888999999999999999988766
No 123
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=90.10 E-value=1.8 Score=48.12 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+++.++.++.|+...+|..||++.+++++..|.|+. +++.|-.||-..|+ .++|-.-|..-.+--||.-+.=|
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn----A~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWk 75 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN----AQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWK 75 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHH
Confidence 467899999999999999999999999999999998 89999999999999 99999999888867777655433
No 124
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=89.47 E-value=0.92 Score=38.47 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
..-+....+.|+..+.+|+|..|+.+|-.|+..++.+..
T Consensus 60 e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 60 ERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 344778899999999999999999999999998877655
No 125
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.44 E-value=0.76 Score=25.12 Aligned_cols=30 Identities=33% Similarity=0.604 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~ 199 (287)
..+..|...+..|+|..|+..|..++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 356789999999999999999999987554
No 126
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=1.9 Score=43.28 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-----------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-----------GEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG-----------GEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
++++.|...=+.|-.-|++|+|..|+..++.|+...+.....- .-+.+-||++|-..++..+||..|-+
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 4455555556677788888888888888888777665322211 13567789999999999999999998
Q ss_pred HHHhCCCHHH
Q 023077 232 LESNHPSKNI 241 (287)
Q Consensus 232 L~~~HPd~qV 241 (287)
.. .+-...+
T Consensus 283 vL-e~~~~N~ 291 (397)
T KOG0543|consen 283 VL-ELDPNNV 291 (397)
T ss_pred HH-hcCCCch
Confidence 77 5544443
No 127
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.01 E-value=2.2 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
-.++||.||.+.|+.++|...|..|.+..|+-. ||+.|...++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~---Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR---QAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H---HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH---HHHHHHHHHH
Confidence 468899999999999999999999998888864 5666665543
No 128
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.97 E-value=0.98 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
++.+.++..|...|+.++|+..+++..+-.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999875444
No 129
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.91 E-value=5.5 Score=35.44 Aligned_cols=85 Identities=14% Similarity=-0.033 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
+..+..+-.|...+.+|+|..|+.+|..+.. ..+.++ -+.-.||.|+...|+..==.--.+-|. ..+|+..+.=.
T Consensus 42 ~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-~~~~~p---~~kALlA~CL~~~~D~~Wr~~A~evle-~~~d~~a~~Lv 116 (160)
T PF09613_consen 42 EFPELDLFDGWLHIVRGDWDDALRLLRELEE-RAPGFP---YAKALLALCLYALGDPSWRRYADEVLE-SGADPDARALV 116 (160)
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHHhc-cCCCCh---HHHHHHHHHHHHcCChHHHHHHHHHHh-cCCChHHHHHH
Confidence 3456677889999999999999999999766 334444 378888999999998765444455565 78899999999
Q ss_pred HHHHHHhcCC
Q 023077 246 ADLRYILQAP 255 (287)
Q Consensus 246 KqLLyILEAP 255 (287)
+.|+.+=+-+
T Consensus 117 ~~Ll~~~~~~ 126 (160)
T PF09613_consen 117 RALLARADLE 126 (160)
T ss_pred HHHHHhcccc
Confidence 9887765443
No 130
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.88 E-value=1.5 Score=44.91 Aligned_cols=59 Identities=22% Similarity=0.178 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
-|..-+.++.|.+||-+|++|+++.. ...+.-+-+..-|+.+|.+.|+.++|-.+|+.-
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 57777889999999999999998766 778888999999999999999999998888753
No 131
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.87 E-value=7.1 Score=37.15 Aligned_cols=87 Identities=24% Similarity=0.119 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
..|...+..|.--+++|.|-.||--++.+++. -++++.--++..+|.-||...|=++.|-..-+-|....|+.+ |.
T Consensus 165 ~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~---~~ 240 (254)
T COG4105 165 ALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ---WY 240 (254)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc---ch
Confidence 44667788899999999999999999999987 556667789999999999999999999999999998888887 55
Q ss_pred HHHHHHhcCCC
Q 023077 246 ADLRYILQAPK 256 (287)
Q Consensus 246 KqLLyILEAPk 256 (287)
+.--.++..+.
T Consensus 241 ~~~~~~~~~~~ 251 (254)
T COG4105 241 KDAYRLLQRGG 251 (254)
T ss_pred hhhhhcccccc
Confidence 55444444443
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=88.87 E-value=0.92 Score=49.87 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
|-+|+|..|..+-+-++... .+...=.+..+||+++|.+.|+.++|...|.+=+
T Consensus 281 yfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 281 YFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred hhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44555555555555554422 2222223344555555555555555555554444
No 133
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.03 E-value=5.9 Score=37.42 Aligned_cols=90 Identities=22% Similarity=0.217 Sum_probs=68.6
Q ss_pred HHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077 146 KRMRVRRELE--KVAKEQAER---RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 146 ~~~rv~~~L~--~~a~~~a~~---~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G 220 (287)
--|+++++|. .--+|.++. -.+.+..|..|.++.+-|+|.+|+.+++++++-.=...+ ++.+.||.|.-+.|
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---a~lLglA~Aqfa~~ 138 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---AMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---HHHHHHHHHHHhhc
Confidence 3455666653 222333333 356788999999999999999999999999874434444 68889999999999
Q ss_pred ChHHHHHHHHHHHHhCCC
Q 023077 221 RHADCIALYKQLESNHPS 238 (287)
Q Consensus 221 q~EkAIALCQ~L~~~HPd 238 (287)
+...|..+..+|-..||.
T Consensus 139 ~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred cHHHHHHHHHHHhhcCCc
Confidence 999999999999866654
No 134
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.02 E-value=1.3 Score=27.83 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.++..|+.+|...|+.++|+.+|++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 367789999999999999999988876
No 135
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.90 E-value=0.77 Score=28.27 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 023077 207 EIQIWLAMAYEANNRHADCIALYK 230 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ 230 (287)
.+.+.|+.+|...|+.++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999988876
No 136
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=87.49 E-value=1.7 Score=43.99 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..++.+..+.+.+.|..|++.-|+++...|.-+..--.+.-.+.++|..-|+.-+||.-|....+--|+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 377778888888888888888888887666545544445556677777777777777777777643343
No 137
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.44 E-value=3.4 Score=37.71 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----------HADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----------~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
..|.+||+.|+.|+.+.|.... +.+.|..||...|. .++|...+++-.+.-|+.++-+.+=++-.
T Consensus 49 ~miedAisK~eeAL~I~P~~hd----Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHD----ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHH----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3678899999999998877665 89999999988776 67888888888888999888887766542
Q ss_pred HhcCCCC
Q 023077 251 ILQAPKL 257 (287)
Q Consensus 251 ILEAPkL 257 (287)
.||.|
T Consensus 125 --kap~l 129 (186)
T PF06552_consen 125 --KAPEL 129 (186)
T ss_dssp --THHHH
T ss_pred --hhHHH
Confidence 45544
No 138
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.26 E-value=6.3 Score=40.11 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHH--------HH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYK--------QL 232 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~-----~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ--------~L 232 (287)
-.+...+-.+..++-+|+|..|...++.+...... ....+..+.+.+++-|++.|+.+.|...|+ ..
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~ 438 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAA 438 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhh
Confidence 44667788899999999999999999988866542 245677899999999999999999999998 55
Q ss_pred HHhCCCHHHHHHHH-HHHHHhcCCCCCC
Q 023077 233 ESNHPSKNIRRQAA-DLRYILQAPKLKI 259 (287)
Q Consensus 233 ~~~HPd~qVRqQAK-qLLyILEAPkLkr 259 (287)
..+.+..++.--|. .+.-|+..|.=+.
T Consensus 439 ~~~~~~~El~ila~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 439 NRKSKFRELYILAALNLAIILQYESSRD 466 (608)
T ss_pred ccCCcchHHHHHHHHHHHHHhHhhcccc
Confidence 55777888887776 4666777664433
No 139
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=87.15 E-value=5.7 Score=38.67 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA--NNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~L~~~HPd 238 (287)
......+..+|.+++|+.|.++|+.++...+..-. -+..-.|+.||.+ ..++.+|..+.+.+. .+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~-~~~~ 200 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLL-KRDK 200 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHhh
Confidence 44667788999999999999999999875333322 4677778888886 778999999999888 4443
No 140
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=86.91 E-value=2.6 Score=39.48 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCC-CHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-ADCIALYKQLESNHP-SKNIRRQ 244 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~-EkAIALCQ~L~~~HP-d~qVRqQ 244 (287)
+.....-.+..-+.+|+|.+|.+.|+.++...+. -..+..-|++++.-.|+. +.+-.+-.+|...|| +|-+...
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 3445556677778888888888888887764433 245777888888888887 666677777777777 4544444
Q ss_pred H
Q 023077 245 A 245 (287)
Q Consensus 245 A 245 (287)
+
T Consensus 276 ~ 276 (290)
T PF04733_consen 276 A 276 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.80 E-value=5.9 Score=35.25 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
.+..+-.|.-.+.+|+|.+|+..|..+.. ...+++. +.-.+|.|+.+.|+-.==.--.+-|. ..++++...-.+.
T Consensus 44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~-~~~~~p~---~kAL~A~CL~al~Dp~Wr~~A~~~le-~~~~~~a~~Lv~a 118 (153)
T TIGR02561 44 KELDMFDGWLLIARGNYDEAARILRELLS-SAGAPPY---GKALLALCLNAKGDAEWHVHADEVLA-RDADADAVALVRA 118 (153)
T ss_pred cccchhHHHHHHHcCCHHHHHHHHHhhhc-cCCCchH---HHHHHHHHHHhcCChHHHHHHHHHHH-hCCCHhHHHHHHH
Confidence 44566779999999999999999999776 3444443 77788999999999876666666676 8899999999999
Q ss_pred HHHHhcCCC
Q 023077 248 LRYILQAPK 256 (287)
Q Consensus 248 LLyILEAPk 256 (287)
|+.+++.|.
T Consensus 119 l~g~~~~~~ 127 (153)
T TIGR02561 119 LLGAQQPPA 127 (153)
T ss_pred HhccccCCc
Confidence 988887774
No 142
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.74 E-value=1.9 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~ 198 (287)
+......|...+.+|+|.+|+.+++.++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4567788999999999999999999998754
No 143
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.73 E-value=2.5 Score=43.39 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
...|.....+|+|.+|+.+|+.++........ .-..+.++++.+|...|+.++|+...++-..-.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46788889999999999999999986543322 224688999999999999999998877665333
No 144
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.68 E-value=2.5 Score=44.19 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...=..|-..|..|.|.+||.++..|++.+|.-.-+ .--.+-||...|+.++-|.-|-+-.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF----YsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF----YSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh----hhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 344567999999999999999999999988874332 2234566666666666666665544
No 145
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=1.4 Score=46.00 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....|..|+--|--++|..||+=|++++.+.|.+-- ++++|+-|...+++.+.+...++.-++++|+
T Consensus 394 ~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~----~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 394 PDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY----AYIQLCCALYRQHKIAESMKTFEEAKKKFPN 460 (606)
T ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345788899999999999999999999997776654 8999999999999999999999999999997
No 146
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.07 E-value=1.7 Score=28.18 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTI 197 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~ 197 (287)
....|.....+|+|++||+++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356788899999999999999996643
No 147
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.93 E-value=10 Score=27.71 Aligned_cols=62 Identities=29% Similarity=0.419 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM-AYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAt-AYqa~Gq~EkAIALCQ~L~ 233 (287)
....+..|......++|..++..+..+....+.+ .....+... +|...|+.++|+..++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDP----DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445566666666677777777777766644443 124444444 6777777777777777655
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=85.50 E-value=2.6 Score=46.56 Aligned_cols=72 Identities=13% Similarity=0.218 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
..++..|..|..-..+|+|..|-.++-.++...+.+.-+ ..+.|++-|...|+.+.|+..+.++.++.|+-.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l---~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL---PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc---cccchhHHHHHhchHHHHHHHHHHHHHhCcchH
Confidence 347789999999999999999999999999877777554 777888889999999999999999998898854
No 149
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.21 E-value=7.6 Score=39.95 Aligned_cols=64 Identities=13% Similarity=0.021 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+..|...+.+|+|..|.++++.++...... +.....+...++.+|...|+.++|.++|+...
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 34456778899999999999999988765432 12233455677888888899999988888764
No 150
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=85.14 E-value=11 Score=38.48 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL 179 (287)
|+-...-+|---.-.|-+||.-+.....-+..+.+. + +..-|+++-.-..+-....+..+.|+
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-----~------------~~~eaqskl~~~~e~~~l~~ql~s~~ 166 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-----G------------LVLEAQSKLALIQEHWVLVQQLKSAS 166 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-----c------------hhHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 444444444444455667777666666666666652 2 22223333334444555667788999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..|||..||+++..+++..+=.-+ .+..=|.||.+.|+..+||.=-+...
T Consensus 167 ~~GD~~~ai~~i~~llEi~~Wda~----l~~~Rakc~i~~~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQPWDAS----LRQARAKCYIAEGEPKKAIHDLKQAS 216 (504)
T ss_pred cCCchhhHHHHHHHHHhcCcchhH----HHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999999999996654444 77788889999999999987665544
No 151
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.03 E-value=3.8 Score=42.57 Aligned_cols=85 Identities=22% Similarity=0.208 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQ 244 (287)
.++.+++|+..|.+-+..+..-.+=.+. ....+....-+..-||++....|+.++||..++.|.+-+|.- .|+.+
T Consensus 223 ~rqAvkAgE~~lg~s~~~~~~g~~~e~~--~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren 300 (539)
T PF04184_consen 223 LRQAVKAGEASLGKSQFLQHHGHFWEAW--HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN 300 (539)
T ss_pred HHHHHHHHHHhhchhhhhhcccchhhhh--hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence 4455566666666543333222221112 223444445566779999999999999999999998567753 35555
Q ss_pred HHHHHHHhcC
Q 023077 245 AADLRYILQA 254 (287)
Q Consensus 245 AKqLLyILEA 254 (287)
--..|-++++
T Consensus 301 Lie~LLelq~ 310 (539)
T PF04184_consen 301 LIEALLELQA 310 (539)
T ss_pred HHHHHHhcCC
Confidence 4444444443
No 152
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=85.01 E-value=26 Score=35.49 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
.+..+...+.+|+|..|-..+..+....|.+.. +.-..+.+|...|+-+...++-.+|.+.+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~----vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPE----VLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 566678889999999999999999997766665 99999999999999999999999998554
No 153
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.42 E-value=17 Score=34.86 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
..+.|.+.+..+.+..||.-.-+++++-|.+- .|..--|-||...-..++|+.=|++|... +|..+ +|+.-..
T Consensus 137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~-ear~~i~ 209 (271)
T KOG4234|consen 137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES--DPSRR-EAREAIA 209 (271)
T ss_pred HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchH-HHHHHHH
Confidence 34455566666666666666666666444333 35556688999999999999999999954 45544 6776655
Q ss_pred Hh
Q 023077 251 IL 252 (287)
Q Consensus 251 IL 252 (287)
-|
T Consensus 210 rl 211 (271)
T KOG4234|consen 210 RL 211 (271)
T ss_pred hc
Confidence 55
No 154
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.89 E-value=11 Score=29.63 Aligned_cols=49 Identities=22% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 187 AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.|+-|+..++..|.+. ++++.||.+|...|+.+.|+..+-.+.+++|+.
T Consensus 7 ~~~al~~~~a~~P~D~----~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDL----DARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-H----HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5778888898666554 599999999999999999999999999777665
No 155
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.87 E-value=4 Score=36.25 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077 167 TAQLMFELGQKAYGK---GMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (287)
Q Consensus 167 ~ae~~yeaG~aALer---GdY~qAIelLE~Ale-~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (287)
+.+..|+-+-..... -+-++-|.+||..+. .+|...+ +--++||.+|...|+.++|+.+|..|.++-||..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rR---e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~-- 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRR---ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR-- 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccch---hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH--
Confidence 345556666555543 456778999999996 5555555 5789999999999999999999999997777764
Q ss_pred HHHHHHHHHh
Q 023077 243 RQAADLRYIL 252 (287)
Q Consensus 243 qQAKqLLyIL 252 (287)
||..|-.-+
T Consensus 106 -Qa~~Lk~~i 114 (149)
T KOG3364|consen 106 -QALELKETI 114 (149)
T ss_pred -HHHHHHHHH
Confidence 555554333
No 156
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.69 E-value=13 Score=35.57 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH--HHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW--LAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmw--LAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
+.+...-..|-..|..|+|-.|...+-.|+..+|..+.. -+..++ =|-|....+..+.||.-|-+-+.-+|
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e-~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTE-ERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH-HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 334445568999999999999999999999999977662 222222 36789999999999999988875666
No 157
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=83.28 E-value=2.9 Score=29.43 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~ 201 (287)
.....+..|...+..|+|..|++.|+.+++..|.+
T Consensus 28 ~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 28 DPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 35667889999999999999999999999977733
No 158
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.99 E-value=9.5 Score=39.95 Aligned_cols=68 Identities=21% Similarity=0.148 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
-..|+..|++.....++... +.....-++.++|+++|+.+.|+.++|..+|+.+. + +..=--.-|..-
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L----~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a-~-~~~fYG~LAa~~ 386 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM-Q-QRGFYPMVAAQR 386 (644)
T ss_pred HHHHHHccCHHHHHHHHHhc----CHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh-c-CCCcHHHHHHHH
Confidence 34688899998877777663 33333346799999999999999999999999997 3 433333334433
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=82.86 E-value=16 Score=26.68 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=36.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....|+|..|+..+..++...+.. ...+...+...|...|+.++|+..+.......|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD---DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc---chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 445566777777777666654443 3346666666777777777777777666644444
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.74 E-value=2.7 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
++...++..|...|+.++||..|.+.++.+|+..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 5788899999999999999999999998888753
No 161
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.71 E-value=6.8 Score=41.06 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=50.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
++.-..+++.+.|..+. .+.......+.-|.-|.-.|++++|-++|+.|+.+||+.---.||++|
T Consensus 20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (578)
T PRK15490 20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEARYEYARRL 84 (578)
T ss_pred HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchHHHHHHHH
Confidence 33445556666665443 333445578888999999999999999999999999998888999987
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=82.24 E-value=9.6 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
.+-.+...+..++..+||+++..++...|.+ ..+....|..|...|+.+.|+.++++.+ ...-.+.+-|+.
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~lsP~~f~~W~~ 273 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLSKKKYELALEIAKKAV-ELSPSEFETWYQ 273 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhHHHHHH
Confidence 3445666777889999999999999866655 5577778888999999999999999999 565666777765
No 163
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.59 E-value=4.4 Score=43.81 Aligned_cols=62 Identities=26% Similarity=0.278 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+..+++.|-.-.++|....|+.+++++++..|.- ..+---|+..|+.+|..++||..|+.-+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~----aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF----AAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh----hhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 6778888888889999999999999998855443 4477888999999999999999998877
No 164
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.15 E-value=3 Score=43.73 Aligned_cols=56 Identities=21% Similarity=0.389 Sum_probs=46.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++-.=...||.+||++.-+.|..+. -||..|.++...|..++|..+|+.+-.++|.
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~k----wqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSK----WQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 4455567899999997765555454 8999999999999999999999999878885
No 165
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=80.88 E-value=2.8 Score=39.71 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
....-+||-+||.++...|.+. ++++||+..|.-.|-...|..+|..|-
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~----~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNY----QLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 4556789999999999555444 599999999999999999999999886
No 166
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.51 E-value=2.9 Score=44.26 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..|=.|...+++++|..|.=+|.+|+.+-|.++- +.-.+-+.|...|+.++|+.+|.+-.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 4455588899999999999999999998777776 78888899999999999999998876
No 167
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.23 E-value=9.5 Score=34.52 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHHHHHHHH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRRQAADLR 249 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRqQAKqLL 249 (287)
...++.=+..|+++|+.+......+.. -...+.+.++--+...|+.++|+.++..++ .||+. .+.+.|+.+-
T Consensus 134 ~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi-~~~~~s~~~~l~~~AR~~w 211 (214)
T PF09986_consen 134 EENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI-GSKKASKEPKLKDMARDQW 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-cCCCCCCcHHHHHHHHHHH
Confidence 344445578899999998875554222 224677888999999999999999999999 77753 5577777654
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.91 E-value=2.5 Score=29.40 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~ 201 (287)
....+..|...+..|+|.+|.+.|+.++...|.+
T Consensus 25 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 25 PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4567889999999999999999999999866664
No 169
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.83 E-value=7.5 Score=39.96 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~----~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..|..-..+|+|..|+++++.|+... ....+.-.....+++.+|...|+..+|+-+|+.-.
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 38899999999999999999999862 23455556678899999999999999999998754
No 170
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=79.30 E-value=5.3 Score=43.84 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc---------------hHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF---------------GGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l---------------GGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
..-.|-.|...+++++|.++.-. .++...+.+++. .-.|.+.||.||+..|+.++|++.|+.+
T Consensus 65 i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 65 ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45677888899999999998877 777777766611 1148999999999999999999999999
Q ss_pred HHhC
Q 023077 233 ESNH 236 (287)
Q Consensus 233 ~~~H 236 (287)
..-.
T Consensus 143 L~~D 146 (906)
T PRK14720 143 VKAD 146 (906)
T ss_pred HhcC
Confidence 8433
No 171
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=78.34 E-value=23 Score=36.34 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
..|-.++---..|+|..|+++++.|+. .||.-.+..|+.|..|-..|+.++|......-. .-=-.+---+.+-..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~----htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar-~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIE----HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR-ELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hCChhhHHHHHHHHH
Confidence 446667777789999999999999999 455556899999999999999999998776655 222222223344444
Q ss_pred HHhcCCCC
Q 023077 250 YILQAPKL 257 (287)
Q Consensus 250 yILEAPkL 257 (287)
|.|-|-..
T Consensus 271 y~LRa~~~ 278 (517)
T PF12569_consen 271 YLLRAGRI 278 (517)
T ss_pred HHHHCCCH
Confidence 55555433
No 172
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=78.19 E-value=9.8 Score=28.48 Aligned_cols=59 Identities=24% Similarity=0.142 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH--HHcCChHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY--EANNRHADCIALY 229 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY--qa~Gq~EkAIALC 229 (287)
.|..|...|..|+|=+|=+.||.+....+.+.+..-+..|++|.|+ ...|+..-|..+|
T Consensus 2 ~~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 2 ALEEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 5788999999999999999999999766655555556666666654 5678877777664
No 173
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=77.77 E-value=26 Score=28.47 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh-CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTI-IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~-~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (287)
..-..++.+|+.+.|++++..--.. ...++.+--..+..-..=.-..|+..+||.++|+-. .+.+....+.-++++..
T Consensus 6 ~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l-~~~~~~~~~~l~~~~~l 84 (145)
T PF10607_consen 6 KKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL-SPFNDEFLEELKKLMSL 84 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhHHHHHHHHHHHHHH
Confidence 4456788999999999999886532 234455544444444444445799999999999855 33333466666666555
Q ss_pred h
Q 023077 252 L 252 (287)
Q Consensus 252 L 252 (287)
|
T Consensus 85 L 85 (145)
T PF10607_consen 85 L 85 (145)
T ss_pred H
Confidence 5
No 174
>PLN02789 farnesyltranstransferase
Probab=77.66 E-value=12 Score=35.69 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCH
Q 023077 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSK 239 (287)
Q Consensus 181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~ 239 (287)
.+.|.+|+.++.+++...|.+.. +......++...| +.++|+.+|.+++..+|..
T Consensus 50 ~e~serAL~lt~~aI~lnP~~yt----aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn 105 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYT----VWHFRRLCLEALDADLEEELDFAEDVAEDNPKN 105 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc
Confidence 45667777777777776665544 5566666666666 4577777776666555544
No 175
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.40 E-value=4.8 Score=42.30 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES-NHPSKNIRRQAADLR 249 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~-~HPd~qVRqQAKqLL 249 (287)
..+.|-.||..|+|..|.+++..++. +..-..++.+-.-.-|.+.|+.++|+.++-+|-. -..+.+|--|-..+-
T Consensus 493 ~~nkgn~~f~ngd~dka~~~ykeal~----ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 493 LTNKGNIAFANGDLDKAAEFYKEALN----NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred hhcCCceeeecCcHHHHHHHHHHHHc----CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34557789999999999999999987 5555678999999999999999999999887731 123556666666666
Q ss_pred HHhcCCCCCCCcccccc
Q 023077 250 YILQAPKLKISQEEMVT 266 (287)
Q Consensus 250 yILEAPkLkrp~eW~v~ 266 (287)
..||.|.- .-+|.++
T Consensus 569 e~led~aq--aie~~~q 583 (840)
T KOG2003|consen 569 ELLEDPAQ--AIELLMQ 583 (840)
T ss_pred HHhhCHHH--HHHHHHH
Confidence 66776632 2355544
No 176
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.99 E-value=6.6 Score=42.53 Aligned_cols=61 Identities=16% Similarity=0.159 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
-|-.-=++|+.+.|+.+++.+++..|..-. +.+-|+.||+..|+.+.|..+|.+-..-+|+
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~p~fid----a~inla~al~~~~~~~~a~~~~~~alqlnP~ 182 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELKPKFID----AYINLAAALVTQGDLELAVQCFFEALQLNPD 182 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcCchhhH----HHhhHHHHHHhcCCCcccHHHHHHHHhcCcc
Confidence 666677899999999999999997766554 9999999999999999999999987756664
No 177
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.64 E-value=7.9 Score=36.02 Aligned_cols=64 Identities=13% Similarity=0.104 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
-..++.+++.++.|+|+.|+..|..++. .+..+.+..=+.+-||...-..|+.++|+++..+..
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~-~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALA-QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 3567888888888888888888888775 455566666667777777777777777766666555
No 178
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=76.27 E-value=68 Score=32.79 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=55.2
Q ss_pred HHHHHHHHHHH-HHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 023077 112 IEEMRELEKKA-EELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKE--QAERRATAQLMFELGQKAYGKGMYGRAI 188 (287)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~--~a~~~e~ae~~yeaG~aALerGdY~qAI 188 (287)
+.+.+.|.+.. +-+++.++.+. ...-..-..+-..++++|+.+..- .-+.+..+...+.....|+..|+|-.|+
T Consensus 52 ~~~~~~l~~eI~d~l~~~~~~~i---~~~l~~a~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa 128 (593)
T PF06248_consen 52 IERSKSLAREINDLLQSEIENEI---QPQLRDAAEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAA 128 (593)
T ss_pred HHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 34444555555 22344333222 222233345566777788766542 3456677889999999999999999999
Q ss_pred HHHHHHHhhCCC
Q 023077 189 EFLEGALTIIPR 200 (287)
Q Consensus 189 elLE~Ale~~~~ 200 (287)
..|+.+-.....
T Consensus 129 ~~L~~~~~~L~~ 140 (593)
T PF06248_consen 129 DLLEELKSLLDD 140 (593)
T ss_pred HHHHHHHHHHHh
Confidence 999998765553
No 179
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=76.17 E-value=46 Score=34.55 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHhcCCHHHH
Q 023077 115 MRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEK----VAKEQAERR---ATAQLMFELGQKAYGKGMYGRA 187 (287)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~----~a~~~a~~~---e~ae~~yeaG~aALerGdY~qA 187 (287)
+.+++..|+.++.--..+.++ ---+++|++.+.+- .+.....+. ......|-.++..|.-|+|+.|
T Consensus 253 Ia~lr~ra~q~p~~~~~d~~~-------~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A 325 (484)
T COG4783 253 IADLRNRAEQSPPYNKLDSPD-------FQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEA 325 (484)
T ss_pred HHHHHHHHHhCCCCCCCCCcc-------HHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchH
Confidence 455666777776655555542 13455666644432 111111111 3456789999999999999999
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCC
Q 023077 188 IEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAADLRYILQAP 255 (287)
Q Consensus 188 IelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKqLLyILEAP 255 (287)
...|.+.+...|.|-- .+-..+.-|...|+..+|++.+++.....|+ +-++-.=.+.|.-+-.|
T Consensus 326 ~~~l~~L~~~~P~N~~----~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 326 LKLLQPLIAAQPDNPY----YLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 9999999997774433 5556677789999999999999999999999 44444444444433333
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=75.90 E-value=5.7 Score=28.47 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI 197 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~ 197 (287)
..+...+..|..-..+|+|.+|++++++++++
T Consensus 44 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 44 DTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45778999999999999999999999999875
No 181
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=75.24 E-value=21 Score=32.00 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
..+.+...+.-+..|...|.|..|...|..+....+..+.....+.+.-|.-.-..|+..+||..-+.+++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556788999999999999999999999988866555555567999999999999999999999999984
No 182
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.93 E-value=12 Score=34.56 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=45.4
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023077 172 FELGQKAYG-KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (287)
Q Consensus 172 yeaG~aALe-rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI 226 (287)
++.+++.|- +-|=..++++|-.+++..+....+-.++...||+.|+..|+.+.|-
T Consensus 143 lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 143 LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 344444443 7888999999999999888888888899999999999999999885
No 183
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.24 E-value=12 Score=39.45 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH--------------HHh
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL--------------ESN 235 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L--------------~~~ 235 (287)
..|+.|...|+.|+...|+=.||.++...| -..+|+.||-+..--+++...||+..+.- .=.
T Consensus 287 dPf~eG~~lm~nG~L~~A~LafEAAVkqdP----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 287 DPFKEGCNLMKNGDLSEAALAFEAAVKQDP----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred ChHHHHHHHHhcCCchHHHHHHHHHHhhCh----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 568899999999999999999999998544 34457777777777777777777654432 224
Q ss_pred CCCHHHHHHHHHHHHHh
Q 023077 236 HPSKNIRRQAADLRYIL 252 (287)
Q Consensus 236 HPd~qVRqQAKqLLyIL 252 (287)
|-|.....+|-.+|.-+
T Consensus 363 ytNeg~q~~Al~~L~~W 379 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKW 379 (579)
T ss_pred HhhhhhHHHHHHHHHHH
Confidence 55566666666666654
No 184
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.82 E-value=8.8 Score=39.30 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=41.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.-+-+.||.-||.+||-...... ..-.++++|++-+|-..|+.++|...|.-|.
T Consensus 31 dfls~rDytGAislLefk~~~~~---EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~ 84 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDR---EEEDSLQLWIAHCYFHLGDYEEALNVYTFLM 84 (557)
T ss_pred HHHhcccchhHHHHHHHhhccch---hhhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 45678889999999888764322 2224688999999999999999999888887
No 185
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=72.95 E-value=19 Score=38.21 Aligned_cols=74 Identities=18% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
.......+..+|.+++|.+|.+++++++...|.+++. .-+.++ +|.-.|+..+=.-|--+|.+.||+..+.=-|
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~---~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~a 317 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC---LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFA 317 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch---HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhh
Confidence 3456778999999999999999999999999999985 555566 8888999999999999999999998775433
No 186
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.73 E-value=17 Score=31.23 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (287)
....+.||+|.+| ++++-+. .++ -+.=|+|.|--..|-..++-.....|. ...+|+.+..|..+..-
T Consensus 47 ~~sLmNrG~Yq~A--Ll~~~~~----~~p---dL~p~~AL~a~klGL~~~~e~~l~rla-~~g~~~~q~Fa~~~~~~ 113 (116)
T PF09477_consen 47 LSSLMNRGDYQEA--LLLPQCH----CYP---DLEPWAALCAWKLGLASALESRLTRLA-SSGSPELQAFAAGFREQ 113 (116)
T ss_dssp HHHHHHTT-HHHH--HHHHTTS------G---GGHHHHHHHHHHCT-HHHHHHHHHHHC-T-SSHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHH--HHhcccC----CCc---cHHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence 4567899999999 7777665 333 267799999999999999999999999 89999999999877543
No 187
>PLN02789 farnesyltranstransferase
Probab=72.39 E-value=28 Score=33.22 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=49.2
Q ss_pred HHHHHHhcCC--HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 174 LGQKAYGKGM--YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 174 aG~aALerGd--Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.|.....-|. |..++++++++++..+.+.. |......++...|+.++|+..|.++++..|..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~----AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYH----AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 3444444454 47899999999998887776 88889999999999999999999999655543
No 188
>PF05168 HEPN: HEPN domain; InterPro: IPR007842 The HEPN (higher eukaryotes and prokaryotes nucleotide-binding) domain is a region of 110 residues found in the C terminus of sacsin, a chaperonin implicated in an early-onset neurodegenerative disease in human, and in many bacterial and archeabacterial proteins. There are three classes of proteins with HEPN domain: Single-domain HEPN proteins found in many bacteria. Two-domain proteins with N-terminal nucleotidyltransferase (NT) and C- terminal HEPN domains. This N-terminal NT domain belongs to a large family of NTs, which includes several classes of enzymes that are responsible for some types of bacterial resistance to aminoglycosides. These enzymes deactivate various antibiotics by transferring a nucleotidyl group to the drug. A multidomain sacsin protein in genomes of fish and mammals. The HEPN domain is located at the C terminus of the protein, directly after the DnaJ domain (see PDOC00553 from PROSITEDOC). The crystal structure of the HEPN domain from the TM0613 protein of Thermotoga maritima indicates that it is structurally similar to the C-terminal all- alpha-helical domain of kanamycin nucleotidyltransferases (KNTases). It is composed of five alpha helices, three of which form an up- and-down helical bundle, with a pair of short helices on the side. The distant structural similarity suggests that the HEPN domain might be involved in nucleotide binding [].; PDB: 1O3U_A 1WOL_A 3O10_D 2HSB_A 1UFB_A.
Probab=72.38 E-value=40 Score=25.51 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
-+..|+..++.+...++.|+|..|+-++..++.
T Consensus 4 ~~~~A~~~l~~A~~~~~~~~~~~a~~~a~~a~e 36 (118)
T PF05168_consen 4 WLEKAEEDLKAAEILLEEGDYNWAVFHAYQAVE 36 (118)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788899999999999999999988877776
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.20 E-value=66 Score=32.15 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH---cCChHHHHHHHHH-HH
Q 023077 178 AYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA---NNRHADCIALYKQ-LE 233 (287)
Q Consensus 178 ALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa---~Gq~EkAIALCQ~-L~ 233 (287)
--.-.+|+.=|++.|..-............++...|.|+-. .|+.++|+.++.. |.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 34567899999999986654333344455799999999999 9999999999998 44
No 190
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.07 E-value=63 Score=28.85 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
..-.+++..-.|+..++-..+-.+|.. +....++.+ ++.+.-++-|...|+..+|+.+.+.|....|
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~A-LrvLRP~~~---e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDA-LRVLRPEFP---ELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHH-HHHhCCCch---HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 345577888899999999998888877 554555555 5999999999999999999999999997766
No 191
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.54 E-value=7.1 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 209 QIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.-.|+.+|...|+.++|+.+++.+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3468899999999999999999997
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.02 E-value=7 Score=23.11 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 209 QIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...|..+|...|+.++|..+++.+.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3468899999999999999999987
No 193
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.89 E-value=17 Score=31.15 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 176 QKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 176 ~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
...+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-.-.-.|. ...+|+.++.|..+...+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~------~p---dlepw~ALce~rlGl~s~l~~rl~rla-~sg~p~lq~Faag~req~ 113 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC------YP---DLEPWLALCEWRLGLGSALESRLNRLA-ASGDPRLQTFVAGMREQI 113 (115)
T ss_pred HHHHccchHHHHHHhcCCCC------Cc---hHHHHHHHHHHhhccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 45678999999999999864 33 377899999999999999988888888 899999999998876543
No 194
>PF12854 PPR_1: PPR repeat
Probab=69.89 E-value=6.2 Score=25.67 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
..-.|+.+|...|+.++|+.+....
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 5667999999999999999998753
No 195
>PLN03218 maturation of RBCL 1; Provisional
Probab=69.34 E-value=17 Score=40.38 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=33.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...|++..|+++|+.....-- .....+...|+.+|...|+.++|+.+|+.+.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~---~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGI---KLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 345677777777766554221 1223467777777777777777777777775
No 196
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=69.12 E-value=45 Score=30.18 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA 227 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIA 227 (287)
.|.++-+-|+.+.||+.|-+++...|.+-. +..-=|+||.-+|+.++|+.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raS----ayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERAS----AYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchH----hhccHHHHHHHcCChHHHHH
Confidence 345555566666666666666665554433 34444556666666666654
No 197
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.84 E-value=30 Score=33.72 Aligned_cols=81 Identities=21% Similarity=0.200 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
....=+-..+|+..|+-+-|-.-....-...| +|. ++-..-||-|+++|..++||.+|..|....|.-.+-.. +
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~---RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~K--R 125 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSK---RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRK--R 125 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CCh---hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHH--H
Confidence 33444556789999999988887777777674 444 37888999999999999999999999977776555443 4
Q ss_pred HHHHhcC
Q 023077 248 LRYILQA 254 (287)
Q Consensus 248 LLyILEA 254 (287)
=+.||.|
T Consensus 126 KlAilka 132 (289)
T KOG3060|consen 126 KLAILKA 132 (289)
T ss_pred HHHHHHH
Confidence 4556655
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=68.22 E-value=30 Score=38.38 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
|...+..|.|+.|...||+. ...+.++. ...-.|..+|+-.|+.++|..+|+....++|+.+
T Consensus 50 aLsl~r~gk~~ea~~~Le~~-~~~~~~D~---~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEAL-YGLKGTDD---LTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred HHHHHHhcCchhHHHHHhhh-ccCCCCch---HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHH
Confidence 56667899999999999884 44555544 3566789999999999999999999999999844
No 199
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=68.06 E-value=15 Score=39.11 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.|..-.+.|++++|+++++.||.+.+.+.- .++..+..+-..|+.++|.....+|..--|+..
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l----~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es 591 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPL----CKYHRASILFSLGRYVEALQELEELKELVPQES 591 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCch----hHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH
Confidence 477788999999999999999997776665 889999999999999999999999986666643
No 200
>PLN03218 maturation of RBCL 1; Provisional
Probab=67.79 E-value=22 Score=39.58 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+.|++..|.++|+........-.+ ..-+...|+.+|...|+.++|+.+|+.+.
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445666666666554432110000 01244445555555555555555555554
No 201
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.05 E-value=77 Score=31.16 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=49.0
Q ss_pred HhcCCHHH---HHHHHHHHHhhCCC--------CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCHHHHHH
Q 023077 179 YGKGMYGR---AIEFLEGALTIIPR--------PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH---PSKNIRRQ 244 (287)
Q Consensus 179 LerGdY~q---AIelLE~Ale~~~~--------~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H---Pd~qVRqQ 244 (287)
.....|.. .|++++.+....+. ..+---++.+-||..|-..||.+.|....=.|..+. -|..+|+
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk- 276 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK- 276 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH-
Confidence 34455555 47777776554321 123345899999999999999999999887777553 4455554
Q ss_pred HHHHHHHhcC
Q 023077 245 AADLRYILQA 254 (287)
Q Consensus 245 AKqLLyILEA 254 (287)
+|+.+|++
T Consensus 277 --~lle~f~~ 284 (304)
T COG3118 277 --TLLELFEA 284 (304)
T ss_pred --HHHHHHHh
Confidence 46666665
No 202
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=67.01 E-value=13 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..+..++..|..+..+|..|+|..|..+++.+..
T Consensus 40 ~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~ 73 (103)
T PF14346_consen 40 VELKEAREKLQRAKAALDDGDYERARRLAEQAQA 73 (103)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999998765
No 203
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=66.81 E-value=10 Score=35.60 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=45.2
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 172 FELGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 172 yeaG~aALerG--dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+..+--.|..| .|..|.-.|+..+...+. |+ .+...+|.|+...|+.++|..++++-....|+
T Consensus 169 La~awv~l~~g~e~~~~A~y~f~El~~~~~~-t~---~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 169 LAEAWVNLATGGEKYQDAFYIFEELSDKFGS-TP---KLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SH---HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhccCC-CH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 33344445555 699999999997765443 33 58899999999999999999999886655555
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.12 E-value=41 Score=32.61 Aligned_cols=86 Identities=22% Similarity=0.119 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077 141 ETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 141 ~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G 220 (287)
++-+..-.+.+.+|.++.. -++.=+-.|...+..|+|+.|..-|..|..+.+.|-. +.+.+++++..+.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~-------d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~----~~~g~aeaL~~~a 204 (287)
T COG4235 136 QEMEALIARLETHLQQNPG-------DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE----ILLGLAEALYYQA 204 (287)
T ss_pred ccHHHHHHHHHHHHHhCCC-------CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhc
Confidence 3344555555555555543 2555777899999999999999999999998777655 7777777766544
Q ss_pred ---ChHHHHHHHHHHHHhCC
Q 023077 221 ---RHADCIALYKQLESNHP 237 (287)
Q Consensus 221 ---q~EkAIALCQ~L~~~HP 237 (287)
.+.+|..+.++....-|
T Consensus 205 ~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 205 GQQMTAKARALLRQALALDP 224 (287)
T ss_pred CCcccHHHHHHHHHHHhcCC
Confidence 35788899998884444
No 205
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.89 E-value=14 Score=27.07 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
.|-.+..-+.-|+|..|..+++.+++..|.|..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 577889999999999999999999997776654
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=65.88 E-value=17 Score=36.27 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+==.+..|.-..-+|+-..||+.|+.++.....-..+..-...-++.+|.-.++.++|...+..|.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 334688899999999999999999988853332233344466778999999999999999999999
No 207
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.40 E-value=19 Score=38.09 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
|.-|.--|--|.|++|-.+|-++..+.+...+ +++..+.+|.+.|.+++||+.|-+-.+-.|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgp----aWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGP----AWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccH----HHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 34466667779999999999998886665555 999999999999999999999987664443
No 208
>PLN03077 Protein ECB2; Provisional
Probab=65.17 E-value=25 Score=36.71 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=42.9
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 172 FELGQKAY-GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 172 yeaG~aAL-erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
|..-..+| ..|++..|+++|+.....--.+.. -....|..||...|..++|..+++.+.+.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDE---VTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 33333333 689999999999987753222222 25666778899999999999999998744
No 209
>PLN03077 Protein ECB2; Provisional
Probab=64.59 E-value=39 Score=35.35 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=44.1
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 176 QKAY-GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 176 ~aAL-erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+.|+ ..|++.+|.++|+......+..-. .+..-.|+.+|...|+.++|..+.+++-
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 4444 469999999999998754443222 3688999999999999999999999873
No 210
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=64.20 E-value=13 Score=35.58 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALT-IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale-~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
.....+...+.+|....|+.+|+..+. ...+..++ ..++.+|..++..|..+-|..+|+.|...-....+..|==.|
T Consensus 215 ~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf--~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L~~WEP~L 292 (301)
T TIGR03362 215 ELREEARALAAEGGLEAALQRLQQRLAQAREPRERF--HWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGLAEWEPAL 292 (301)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCccccChHH
Confidence 345667888999999999999998554 23333343 577889999999999999999999998655555555554444
Q ss_pred HHHh
Q 023077 249 RYIL 252 (287)
Q Consensus 249 LyIL 252 (287)
+.-+
T Consensus 293 ~~~l 296 (301)
T TIGR03362 293 ALRV 296 (301)
T ss_pred HHHH
Confidence 4433
No 211
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.75 E-value=17 Score=32.99 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 186 RAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 186 qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
..|++|++|.+... ...+....+...||.-|...|+.++|+.+++.+...
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56889999987666 346777788899999999999999999999999743
No 212
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.95 E-value=1.2e+02 Score=28.51 Aligned_cols=82 Identities=20% Similarity=0.106 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
......+...|+....++..+.- ..+..+|+.+. .++.|..|..+-|-||.++--.|+.++|++-.++-...-.|..+
T Consensus 47 ~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~-~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l 124 (207)
T COG2976 47 VEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQ-ANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL 124 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH
Confidence 44445677899999999987777 88888888665 55577788899999999999999999999998877734445555
Q ss_pred HHHH
Q 023077 242 RRQA 245 (287)
Q Consensus 242 RqQA 245 (287)
+.-+
T Consensus 125 k~l~ 128 (207)
T COG2976 125 KALA 128 (207)
T ss_pred HHHH
Confidence 4433
No 213
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.56 E-value=36 Score=30.22 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
.+.+..+.|+..+.+|+|..++.+|-.|+..++.+..
T Consensus 80 ~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 80 FFMQQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HHHHHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 3667889999999999999999999999986654433
No 214
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=62.49 E-value=93 Score=27.50 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCCc
Q 023077 166 ATAQLMFELGQKAYGKG-MYGRAIEFLEGALTIIPRPTFF 204 (287)
Q Consensus 166 e~ae~~yeaG~aALerG-dY~qAIelLE~Ale~~~~~S~l 204 (287)
.-+....+.|+..+.+| ++..|+.+|-.|+..++.+..+
T Consensus 88 ~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 88 AFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 34778889999999999 9999999999999988877664
No 215
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.44 E-value=7 Score=39.16 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH----HHHHHHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK----NIRRQAAD 247 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~----qVRqQAKq 247 (287)
=-.+..||..|..++||++|..+++..++... +.-+-+.+|-...+-..||.=|-.-+.-.||. ..|..|.+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~----l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAI----LYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhh----hcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 34567899999999999999999986665544 44455666667777777777776555455553 35666666
Q ss_pred HHHHhc
Q 023077 248 LRYILQ 253 (287)
Q Consensus 248 LLyILE 253 (287)
+|.+++
T Consensus 194 llg~~e 199 (377)
T KOG1308|consen 194 LLGNWE 199 (377)
T ss_pred HhhchH
Confidence 666554
No 216
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=62.13 E-value=23 Score=30.82 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=24.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023077 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSK 128 (287)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (287)
+|+|=+.-|+|++. .++.|++.+++++..
T Consensus 97 ~~~WGkkaRrRqkk--~~k~l~~~~e~~~~~ 125 (140)
T PF07543_consen 97 VFGWGKKARRRQKK--QQKKLEEAEEQRREE 125 (140)
T ss_pred CccccHHHHHHHHH--HHHHHHHHHHHHHhc
Confidence 58999999999997 477888888888777
No 217
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.26 E-value=75 Score=32.69 Aligned_cols=90 Identities=20% Similarity=0.194 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH-hhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 158 AKEQAERRATAQLMFELGQKAYGKGMYGRAIE--FLEGAL-TIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 158 a~~~a~~~e~ae~~yeaG~aALerGdY~qAIe--lLE~Al-e~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
|.|.++-..+|+..|+.+++|-+ +.|++.-+ +.-+.- ......+..-.-+.--|||+-...|+..+|+..++.|.+
T Consensus 225 AEEEa~Ti~~AE~l~k~ALka~e-~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 225 AEEEATTIVDAERLFKQALKAGE-TIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 45666666667777777766654 45554332 222211 122234443333445689999999999999999999998
Q ss_pred hCCCHHHHHHHHHH
Q 023077 235 NHPSKNIRRQAADL 248 (287)
Q Consensus 235 ~HPd~qVRqQAKqL 248 (287)
.+|-..+-.--..|
T Consensus 304 e~pl~t~lniheNL 317 (556)
T KOG3807|consen 304 EFPLLTMLNIHENL 317 (556)
T ss_pred hccHHHHHHHHHHH
Confidence 88866554433444
No 218
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=61.19 E-value=77 Score=26.90 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI 226 (287)
+..+...++.+..|+.+|+|.+|-.+||.|==..+...-....+-.+|=..=-.+++..+++
T Consensus 6 ~~~~~~el~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~ 67 (112)
T PF12487_consen 6 RPAYDAELEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVL 67 (112)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHH
Confidence 34577789999999999999999999999665555555555666666544444555555544
No 219
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.98 E-value=87 Score=34.36 Aligned_cols=67 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+.+...|+-.+|-.|+++++.-+...+.. ++.-..+|=.|+.+|-+.-|.++|...|+.-. +|-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE-~~d 424 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE-EVD 424 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-hhc
Confidence 45678889999999999999999988776633 55558999999999999999999999999998 774
No 220
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.77 E-value=42 Score=33.51 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+.....+..+++.|.|.+||++...+++..|.+.. ....|...|+..|+.=.||.-|..+.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~----~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ----DNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH----HHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455667788999999999999999999998777665 77888899999999988888887765
No 221
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=60.53 E-value=29 Score=37.33 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..+..+-..+.-.+.|.+++|+++|...-...- ..+ -..--.+.-|...|+.++|+.+|+.|+.++||.
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~--Dkl--a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV--DKL--AFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--HHH--HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 34445556667777888889999999999887443111 111 234456777889999999999999999888874
No 222
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=60.45 E-value=37 Score=34.73 Aligned_cols=51 Identities=14% Similarity=0.045 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
..|++..|...++.++...|.+.. ....|+.+|...|+.++|..+++.+.+
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~----~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLN----NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCc----chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566677777777666655444332 456677777777777777777777663
No 223
>PF13041 PPR_2: PPR repeat family
Probab=60.24 E-value=20 Score=24.23 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
..--|+.+|...|+.++|..+++++.++.-.|.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 455688999999999999999999985443343
No 224
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=60.16 E-value=2.3e+02 Score=32.14 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHH---------------------HHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWL---------------------AMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~lGGEAQmwL---------------------AtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+|++||+.||+|-..+.......-.+.-|+ .++-.+..+.++|..|...+.-.-|-+..
T Consensus 415 QYQQAi~ALekAk~Lc~l~dLt~~~~e~~~~~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A 494 (1480)
T COG3096 415 QYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEA 494 (1480)
T ss_pred HHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhH
Confidence 699999999999988886654433344443 34556778889999888777767888888
Q ss_pred HHHHHHHHHHh
Q 023077 242 RRQAADLRYIL 252 (287)
Q Consensus 242 RqQAKqLLyIL 252 (287)
-++|+.+|--.
T Consensus 495 ~~~A~~llR~~ 505 (1480)
T COG3096 495 WDVARELLREG 505 (1480)
T ss_pred HHHHHHHHHhC
Confidence 88999887643
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.88 E-value=15 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLE 192 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE 192 (287)
..+..|...+.+|++.+|..+|+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 35778999999999999999986
No 226
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=59.07 E-value=87 Score=30.09 Aligned_cols=75 Identities=17% Similarity=0.051 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 155 EKVAKEQAERRAT--AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 155 ~~~a~~~a~~~e~--ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
+.++=-||.++.. ....=+.|.--+-+|++..|..+|.++....+.++. |.--||.+.-.+|+.+.|-.+-.+.
T Consensus 153 Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~----v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 153 ARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR----VRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH----HHHHHHHHHhhcCChHHHHhhcccc
Confidence 3333333444433 233445677778889999999999988874444544 8888899999999999988877665
Q ss_pred H
Q 023077 233 E 233 (287)
Q Consensus 233 ~ 233 (287)
.
T Consensus 229 ~ 229 (257)
T COG5010 229 L 229 (257)
T ss_pred c
Confidence 5
No 227
>PF13628 DUF4142: Domain of unknown function (DUF4142)
Probab=58.97 E-value=14 Score=30.40 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=31.5
Q ss_pred cCChHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHhcC
Q 023077 219 NNRHADCIALYKQ-LESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 219 ~Gq~EkAIALCQ~-L~~~HPd~qVRqQAKqLLyILEA 254 (287)
...++++|++|+. +..+-.|+.|+.+|...|..|+.
T Consensus 95 i~~h~~~l~~~~~~~~~~~~~~~lk~~a~~~lp~l~~ 131 (139)
T PF13628_consen 95 IKAHEKALALFEKQLAASGKDPELKAFAQETLPVLEA 131 (139)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHH
Confidence 4568899999999 77688999999999999988864
No 228
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=58.42 E-value=27 Score=35.65 Aligned_cols=49 Identities=10% Similarity=0.115 Sum_probs=33.2
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
.+.|++..|.+.|+.... ++. -.+..|+.+|..+|+.++|+.+++.+..
T Consensus 371 ~k~G~~~~A~~vf~~m~~---~d~----~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 371 SKWGRMEDARNVFDRMPR---KNL----ISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHCCCHHHHHHHHHhCCC---CCe----eeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356778888877776432 222 2567777777777777777777777663
No 229
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=58.31 E-value=16 Score=25.18 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTI 197 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~ 197 (287)
.....|.-.++.++|.+||+=|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456789999999999999999998874
No 230
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.62 E-value=18 Score=38.19 Aligned_cols=57 Identities=28% Similarity=0.302 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL 228 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL 228 (287)
+...++.+..||.+|+|+=|.++|.+++-..|.+. +++-+.|-+|+..|=..++-.+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~----~Ar~L~Ad~lEQLgYqaE~A~w 508 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNK----AARELQADALEQLGYQAESATW 508 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccH----HHHHHHHhHHHHhhhhhccchh
Confidence 66789999999999999999999999998665554 4999999999999977766443
No 231
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=21 Score=37.41 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 189 EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 189 elLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
=+|.+|++.-|..++ +...|..+|+..|+.++||..|+.-+ ...+.
T Consensus 419 yYfqkA~~~kPnDsR----lw~aLG~CY~kl~~~~eAiKCykrai-~~~dt 464 (559)
T KOG1155|consen 419 YYFQKALELKPNDSR----LWVALGECYEKLNRLEEAIKCYKRAI-LLGDT 464 (559)
T ss_pred HHHHHHHhcCCCchH----HHHHHHHHHHHhccHHHHHHHHHHHH-hcccc
Confidence 355666665555554 78889999999999999999999888 67666
No 232
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.72 E-value=1.1e+02 Score=32.20 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCc
Q 023077 105 MRRRVKEIEEMRELEKKAEELQSKAEEDDS 134 (287)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (287)
+++-++.++.++-.|...++||.+++...+
T Consensus 244 v~km~kdle~Lq~aEqsl~dlQk~Lekar~ 273 (575)
T KOG4403|consen 244 VNKMMKDLEGLQRAEQSLEDLQKRLEKARE 273 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888889999999999987765
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=56.70 E-value=81 Score=32.54 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ-LESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~-L~~~HPd~ 239 (287)
+...+-.|..-.-.|+|..|+.+|+.|....|. +. .+.++.+...--+|+.+.|+..-+. |. -.|..
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A---~~~~~~~~~~~~~G~~~~a~~~i~~alr-LsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IA---SLYYYRALVHFHNEKIEEARICIDKSLQ-LEPRR 405 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cH---HHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCchh
Confidence 556677787777788899999999999985443 33 4888888888899999999999888 55 66654
No 234
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.60 E-value=39 Score=34.32 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---Cc-hHHH-------------------------------
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FF-GGEI------------------------------- 208 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~l-GGEA------------------------------- 208 (287)
.+......++.|-+++..|.+.+||..|-.++...+... +. --++
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 345566688899999999999999999998887655332 11 0000
Q ss_pred -HHHHHHHHH----------------------HcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 209 -QIWLAMAYE----------------------ANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 209 -QmwLAtAYq----------------------a~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
+..--.||. ++++.--|-.+++.|.+..|.+.+.+||+++|.-=|.
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 001111221 4567778889999999999999999999999886653
No 235
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=56.05 E-value=55 Score=23.62 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=30.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
+..++.+=.-.+++..|..++. . .+ ..++..-+.|+...|. ++++....++....++..||..|-+.|
T Consensus 20 a~~~L~~~~~~~~~~~L~~~l~--d-~~---~~vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 20 AARALGELGDPEAIPALIELLK--D-ED---PMVRRAAARALGRIGD-PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHCCTHHHHHHHHHHHHT--S-SS---HHHHHHHHHHHHCCHH-HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHHcCCHhHHHHHHHHHc--C-CC---HHHHHHHHHHHHHhCC-HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3344444444455555555552 1 11 1355555555555553 334444444332334444555555443
No 236
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.46 E-value=36 Score=36.05 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIA-LYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd 238 (287)
++.=...|..-.+.++=..||..|..|+++.|.|.. |.|.||..|-..|-...|.. ||..|. .||-
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle----aLmaLAVSytNeg~q~~Al~~L~~Wi~-~~p~ 385 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLE----ALMALAVSYTNEGLQNQALKMLDKWIR-NKPK 385 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH----HHHHHHHHHhhhhhHHHHHHHHHHHHH-hCcc
Confidence 566677899999999999999999999998887765 99999999999998877765 677777 6653
No 237
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=55.17 E-value=63 Score=26.19 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
.+...++|.++.-.|-+.+|-.+|...=...|-... ..+..++-|-|.|+..+|+++-..
T Consensus 6 ~~L~VEaalAavNH~L~~ea~ailnalP~li~D~~~----r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 6 NKLVVEAALAAVNHSLPKEAHSILNALPQIIPDKKD----RLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhcccccCCHhH----HHHHHHHHHHhcCcHHHHHHHHhc
Confidence 467889999999999999999999875565554444 677889999999999999987655
No 238
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.72 E-value=36 Score=34.88 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
......|..+...|..++|.+|++....|++.+.|++-
T Consensus 517 ~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~vePG~~ 554 (569)
T PRK04778 517 EEVAEALNEAERLFREYDYKAALEIIATALEKVEPGVT 554 (569)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhCCcHH
Confidence 34567899999999999999999999999988887754
No 239
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.88 E-value=33 Score=33.42 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=37.5
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHHHHcCChHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAYEANNRHADCIALY 229 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGG------------------------------EAQmwLAtAYqa~Gq~EkAIALC 229 (287)
..|+|+.|+++++..++..|.++-..- +++-.|+--|-..|+.++|+=+|
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 468888888888888887766654321 45555666666666666666666
Q ss_pred HHHHHhCC
Q 023077 230 KQLESNHP 237 (287)
Q Consensus 230 Q~L~~~HP 237 (287)
.++.-..|
T Consensus 178 EE~ll~~P 185 (289)
T KOG3060|consen 178 EELLLIQP 185 (289)
T ss_pred HHHHHcCC
Confidence 66554444
No 240
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=53.88 E-value=68 Score=33.80 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
.+..|..-=+-+++.+|.+++++++.... .-++.-.+|.+|||+=+-+.++.++|-..|-... .. ....+.|+.
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~-~~--~~e~eeak~ 545 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL-KG--ETECEEAKA 545 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh-cC--CchHHHHHH
Confidence 44555555566899999999999997442 2344445899999999999999999999888877 44 566778888
Q ss_pred HHHH
Q 023077 248 LRYI 251 (287)
Q Consensus 248 LLyI 251 (287)
||-.
T Consensus 546 LlRe 549 (559)
T KOG1155|consen 546 LLRE 549 (559)
T ss_pred HHHH
Confidence 7543
No 241
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=53.75 E-value=1.2e+02 Score=26.87 Aligned_cols=56 Identities=16% Similarity=0.094 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---C--CchHHHHHH------HHHHHHHcCChHHHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRP---T--FFGGEIQIW------LAMAYEANNRHADCIA 227 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~---S--~lGGEAQmw------LAtAYqa~Gq~EkAIA 227 (287)
.-.|..|++.++.-.+|-++.+|++.+..- + .+--.+.|+ ||.=|..+|+.+-.+.
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELk 71 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELK 71 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHH
Confidence 345788999999888888888888655422 1 112234444 5667899999876544
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.70 E-value=1.7e+02 Score=26.27 Aligned_cols=84 Identities=12% Similarity=-0.003 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAA 246 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAK 246 (287)
.....+....|+..++-..+-.+|.. +....++.+ ++.+.-++-|...|+..+|+.+.+.|...-|+ |-.+.=..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdA-LrvLrP~~~---e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDA-LRVLRPNLK---ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH-HHHhCCCcc---ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 34456667778889999998887776 666666666 59999999999999999999999999965545 32222233
Q ss_pred HHHHHhcCC
Q 023077 247 DLRYILQAP 255 (287)
Q Consensus 247 qLLyILEAP 255 (287)
..|+.+.-|
T Consensus 86 ~CL~al~Dp 94 (153)
T TIGR02561 86 LCLNAKGDA 94 (153)
T ss_pred HHHHhcCCh
Confidence 334444444
No 243
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=53.40 E-value=40 Score=22.98 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 227 ALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 227 ALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
.+-+.+..+-+|+-+|.+|+.+|..|++
T Consensus 8 r~Lk~V~~~D~D~lvr~hA~~~Le~Le~ 35 (36)
T PF10304_consen 8 RTLKYVESTDNDDLVREHAQDALEELEA 35 (36)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 4445556678999999999999999986
No 244
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=53.35 E-value=75 Score=35.48 Aligned_cols=55 Identities=31% Similarity=0.415 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 023077 103 KEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQ 161 (287)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~ 161 (287)
+..++-|.++++|-+..+.+||-|.+..++.- +-+.|++++...+..+++-|++.
T Consensus 210 kk~~Kgv~~~qe~La~~qe~eE~qkreeEE~~----r~eeEEer~~ee~E~~~eEak~k 264 (1064)
T KOG1144|consen 210 KKKPKGVRAMQEALAKRQEEEERQKREEEERL----RREEEEERRREEEEAQEEEAKEK 264 (1064)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556689999999998999998888877653 33444444444444444444433
No 245
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=53.07 E-value=47 Score=31.83 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
+.|.=|++.|+.++|-.+|..++...|.+-+ +..-|+.-....|+.-.|..++...
T Consensus 144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~----~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 144 NLGLCALKAGQFDQAEEYLKRALELDPQFPP----ALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred hhHHHHhhcCCchhHHHHHHHHHHhCcCCCh----HHHHHHHHHHhcccchHHHHHHHHH
Confidence 3344444444444444444444443333322 3344444444444444444444433
No 246
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=52.47 E-value=44 Score=34.33 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRP 201 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~ 201 (287)
.-+.|-.-|.||.|.+||.-+-..+...|-|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence 4566888999999999999999999987744
No 247
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.88 E-value=41 Score=20.20 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..-.++.||-..|+.+.|..+++.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34578899999999999999999988
No 248
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=51.14 E-value=49 Score=30.74 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhhCCCCCCc-------------hHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHH
Q 023077 183 MYGRAIEFLEGALTIIPRPTFF-------------GGEIQIWLAMAYEANN-----RHADCIALYKQLES 234 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~l-------------GGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~~ 234 (287)
-|...++-|+.|++..|..... -+-|.-+++++|.-.+ +.++|++.|..++.
T Consensus 140 vy~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 140 VYTQILADLDEAIALLPEASSAQDFYIYFGDGRAWKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 4677888888888877644221 1256677888888888 89999999999993
No 249
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.66 E-value=61 Score=34.76 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (287)
|+.+--+|+.+.-++|+..+.. ....++ .++-+-|+....+|+.++|..+|+.|. +|.......
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~----~~~~~~---~ll~L~AQvlYrl~~ydealdiY~~L~-kn~~dd~d~ 146 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKG----LDRLDD---KLLELRAQVLYRLERYDEALDIYQHLA-KNNSDDQDE 146 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhc----ccccch---HHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCchHHH
Confidence 5777888999999999999883 223333 367777888899999999999999998 454444433
No 250
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=50.57 E-value=1e+02 Score=26.18 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
.++.+|.+|+|-.|+++.|..|...+....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~ 31 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES 31 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc
Confidence 467899999999999999999987776654
No 251
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.78 E-value=1.7e+02 Score=30.40 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
.+..+..+---|-|--|++||..+..++. .++...-+-.+||.+|...-=.+=+-.+-.--..+|||+-+..+-+-
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~----dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka 226 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQ----DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA 226 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence 34556667778889999999999999988 45555568889999999988777666665554459999998876553
No 252
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=49.71 E-value=75 Score=34.99 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--------
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-------- 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-------- 239 (287)
....|+.+.---.+|...+|+.+||.++...|.... ..|.|-+.|...++.+.|...|-+=++.||+.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K----l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK----LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH----HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 344566666666789999999999999997665554 89999999999999999999998877789984
Q ss_pred ---HHHHHHHHHHHHhcCCCCCCCcccc
Q 023077 240 ---NIRRQAADLRYILQAPKLKISQEEM 264 (287)
Q Consensus 240 ---qVRqQAKqLLyILEAPkLkrp~eW~ 264 (287)
+..-+--+...||+--+|+-|.+..
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 1222445568899988898887754
No 253
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.88 E-value=38 Score=21.36 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 228 LYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 228 LCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
...++. ++|++.||..|-..|..+
T Consensus 4 ~l~~~l-~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLL-NDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHH-T-SSHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 345666 799999999999877654
No 254
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.65 E-value=49 Score=33.82 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+.|+--|.-|.|++|-.+|...++..+.. ...++|+.+|+..-|-..|+-++.+-.+.+|.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~-----dTfllLskvY~ridQP~~AL~~~~~gld~fP~ 288 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHP-----DTFLLLSKVYQRIDQPERALLVIGEGLDSFPF 288 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCch-----hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc
Confidence 55777788888888888888887755543 24566666666666666666666655555554
No 255
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=47.87 E-value=1.2e+02 Score=31.38 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCC
Q 023077 167 TAQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 167 ~ae~~yeaG~aALer-GdY~qAIelLE~Ale~~~~~S~ 203 (287)
.....+..+..+|.+ |+|.+|++....|++.+.|++.
T Consensus 514 ~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~~ 551 (560)
T PF06160_consen 514 EVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGAY 551 (560)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCHH
Confidence 355678999999999 9999999999999998888754
No 256
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=47.82 E-value=89 Score=25.81 Aligned_cols=58 Identities=17% Similarity=0.035 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Q 023077 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA 215 (287)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA 215 (287)
++..+.+.-..--.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+.
T Consensus 6 le~~~~~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l----~~AH~~qt~liq~ 63 (104)
T PRK09591 6 LQVAAFEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNEEL----LEAHHAQTKLLQE 63 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 555555544444568899999999999999999999999976632 2233455555543
No 257
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.77 E-value=1.8e+02 Score=27.50 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-HPSKNIRRQAADLR 249 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-HPd~qVRqQAKqLL 249 (287)
.+.++-..+..|.|.+....+||.... .++.---++=.|..|-...|+..+|.+++++|.+- .....||+.|+-+|
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d---~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~ml 211 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGD---GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCC---CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHHH
Confidence 577888889999999999999995542 23333458888999999999999999999999832 22346888888887
Q ss_pred HHhc
Q 023077 250 YILQ 253 (287)
Q Consensus 250 yILE 253 (287)
..+.
T Consensus 212 dlI~ 215 (221)
T COG4649 212 DLID 215 (221)
T ss_pred HHHh
Confidence 7654
No 258
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=47.63 E-value=2.1e+02 Score=29.40 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAY 179 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aAL 179 (287)
...+|+++-|.-+.+|+.+-.+-++=...+-..= ++++++|.+.+ +.|+|-.++++.++...+.-+.|+
T Consensus 13 yvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL------~k~kk~KeeAl-----~l~~e~e~kLee~e~~Cn~sm~~l 81 (436)
T PF01093_consen 13 YVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTL------EKSKKEKEEAL-----KLANEVEEKLEEEEEVCNESMMAL 81 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999998655555333333222 45556655533 446666677777777777777777
Q ss_pred hcCCHHHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGAL 195 (287)
Q Consensus 180 erGdY~qAIelLE~Al 195 (287)
+.+|-.-|+..|
T Consensus 82 ----WeECkpCL~~tC 93 (436)
T PF01093_consen 82 ----WEECKPCLKQTC 93 (436)
T ss_pred ----HHHHHHHHHHHh
Confidence 777777777666
No 259
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=46.49 E-value=60 Score=33.42 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=32.9
Q ss_pred CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 203 FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 203 ~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+-..++.+-|+.||...|+.++||+.|++-+.-.|+..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a 109 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD 109 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Confidence 34558999999999999999999999999665889865
No 260
>PRK10941 hypothetical protein; Provisional
Probab=45.55 E-value=1.7e+02 Score=27.71 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=59.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
..++.++|..|+...|.++...|..-. +++ =-...|+..|....|+.=++..+.+||+..++.--|..+..|+.
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~---e~R-DRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~~ 263 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPY---EIR-DRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIEQ 263 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHH---HHH-HHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHhh
Confidence 346889999999999999986664432 122 13556999999999999888888899999999888888887764
No 261
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.19 E-value=1.3e+02 Score=33.78 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.2
Q ss_pred ccccccCCCC
Q 023077 262 EEMVTIPLIG 271 (287)
Q Consensus 262 eW~v~IPdL~ 271 (287)
--...||-+.
T Consensus 1149 qRyFri~F~~ 1158 (1259)
T KOG0163|consen 1149 QRYFRIPFMR 1158 (1259)
T ss_pred hheeecceec
Confidence 4445566554
No 262
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=45.07 E-value=1.9e+02 Score=34.41 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc
Q 023077 142 TEEEKRMRVRRELEKVA--KEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN 219 (287)
Q Consensus 142 ~~~~~~~rv~~~L~~~a--~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~ 219 (287)
+|.|+.++|.++-=+.- +|..|.+-.+-..++. +.+|. .=..+-+-||.||+++.+.+ +..-|.--|+..
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNl-En~yG--~eesl~kVFeRAcqycd~~~-----V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNL-ENAYG--TEESLKKVFERACQYCDAYT-----VHLKLLGIYEKS 1543 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH-HHhhC--cHHHHHHHHHHHHHhcchHH-----HHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 220 NRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 220 Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
++.++|+.+++...+++. .+..-|-...=+.|
T Consensus 1544 ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFG-QTRKVWIMYADFLL 1575 (1710)
T ss_pred hcchhHHHHHHHHHHHhc-chhhHHHHHHHHHh
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=45.00 E-value=2.4e+02 Score=25.65 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+.+++---+|+-..|+.-|+++++.....++..-++...=..-|.-.|+.++|.+=+..-. +-..+-.|.|
T Consensus 82 NRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA-~LGS~FAr~Q 152 (175)
T KOG4555|consen 82 NRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAA-QLGSKFAREQ 152 (175)
T ss_pred cHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHH-HhCCHHHHHH
Confidence 3455555689999999999999999999999999999999999999999999999888776 5655555544
No 264
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=44.95 E-value=49 Score=34.72 Aligned_cols=72 Identities=21% Similarity=0.176 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-CCch-HHHHHHHHHHHHHcCChHHHHHHHH
Q 023077 159 KEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP-TFFG-GEIQIWLAMAYEANNRHADCIALYK 230 (287)
Q Consensus 159 ~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~-S~lG-GEAQmwLAtAYqa~Gq~EkAIALCQ 230 (287)
.|.-.|-..|+.-|..|-+-+--.+|..||.++-.-+++.+.- ...| +.+-.-|..||-+.|.+++|+-...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3334444557777777777777778999999888777655532 2222 3566779999999999999986654
No 265
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.61 E-value=1.6e+02 Score=25.21 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
.-...+++.+.++...| ...+..-++.++..+|+.++|..+.++...-+|..+.++|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-----~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-----DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34445556666665333 22466777999999999999999999999889977777765
No 266
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=50 Score=34.52 Aligned_cols=72 Identities=26% Similarity=0.202 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH------------------------------HHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG------------------------------EIQIWLAMAY 216 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG------------------------------EAQmwLAtAY 216 (287)
++.--|-.|.-.|++.+|++|+-+-|+++...+.+.+... +..-.|+-+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3455677788889999999999999998886666655211 2223455566
Q ss_pred HHcCChHHHHHHHHHHHHhCCC
Q 023077 217 EANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 217 qa~Gq~EkAIALCQ~L~~~HPd 238 (287)
-+.|++.+|..+.+...+..|+
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhc
Confidence 6666666666666655544443
No 267
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=44.34 E-value=3.1e+02 Score=26.73 Aligned_cols=34 Identities=38% Similarity=0.707 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcc
Q 023077 99 YDWEKEMRRRVKEIEEMR-ELEKKAEELQSKAEED 132 (287)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (287)
+-||+.+-..||.-|-|| +.+||-..|+..-..+
T Consensus 91 yaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~kg 125 (312)
T PF04782_consen 91 YAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAKG 125 (312)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhCC
Confidence 789999999999999987 6788888887654433
No 268
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=44.29 E-value=34 Score=27.10 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGAL 195 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Al 195 (287)
-...+.|+.+=+.|+-.+||.++++++
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi 35 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGL 35 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 334444555555555544444444444
No 269
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=40 Score=34.09 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+|....+.|-.-|+-|+|..|++.|..|++-..-++. +-+-+|.|+...||...|+.+--.++
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3556777888899999999999999999884444443 78899999999999999999988887
No 270
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=42.57 E-value=1.5e+02 Score=24.21 Aligned_cols=59 Identities=20% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 023077 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (287)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY 216 (287)
++..+.+--..--.|+..+-.++.+.+.|+|..|-++|+.+-+... .+-++|.-|.+-.
T Consensus 3 ~e~~~~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~----~AH~~qt~liq~e 61 (99)
T TIGR00823 3 MELVGFELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGMCLN----EAHLAQTSLLAQE 61 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4455554444445688999999999999999999999998766332 2334666555443
No 271
>PRK10780 periplasmic chaperone; Provisional
Probab=42.45 E-value=2.2e+02 Score=24.43 Aligned_cols=29 Identities=31% Similarity=0.569 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Q 023077 100 DWEKEMRRRVKEIEEM-RELEKKAEELQSK 128 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 128 (287)
.-|++...+-++++.+ .++.++.++||..
T Consensus 47 ~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555554 4566666777665
No 272
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.99 E-value=1.1e+02 Score=28.51 Aligned_cols=66 Identities=18% Similarity=0.166 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhCCCCCCchHHH----HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 186 RAIEFLEGALTIIPRPTFFGGEI----QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 186 qAIelLE~Ale~~~~~S~lGGEA----QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
.|+-.|+.+....+....+..++ ....|..++.+|..++|+.+.+.+. ..|+..-. =..|+.|..-
T Consensus 87 SAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~-~d~~~~~~--r~kL~~II~~ 156 (200)
T cd00280 87 SALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF-SDPESQKL--RMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-cCCCchhH--HHHHHHHHHc
Confidence 57788888888777665565554 4567889999999999999999999 55555444 5567777754
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.85 E-value=54 Score=31.94 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHhhCCCC-CCchHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 182 GMYGRAIEFLEGALTIIPRP-TFFGGEIQIWLAMAYEA-NNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~-S~lGGEAQmwLAtAYqa-~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
.+|.+||.++|++.+..... +.....=-++.|-.|.+ .|+..+||.+|.++....-+..+-+|+-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 47899999999999876643 22222233444555544 6899999999999995556667777754
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.55 E-value=2.3e+02 Score=26.74 Aligned_cols=76 Identities=13% Similarity=0.055 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
.|.+++..-.-|.-+.|+.-|..+-..--.+.+ .-++|..++..-..|+++.|++.+-.+..-.|.|++-+...+|
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYP--VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 344444444444455555555553332223333 2355555555555555555555555555555555555544444
No 275
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=41.37 E-value=62 Score=35.41 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
...-|..|-.|++-++|+.|+..|-.+++..|. ++++.--|++||...|+..+|-...+.-. +|
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd----~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kc 582 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD----NAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KC 582 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC----chhhhhhhhHHHHHHhhhHHHHHHHHHHh-hc
Confidence 456788899999999999999999999985544 45699999999999999999887777665 44
No 276
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.36 E-value=73 Score=28.28 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=38.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCC----CCchHHH----HHHHHHHHHHcCChHHHHHHHHHH
Q 023077 178 AYGKGMYGRAIEFLEGALTIIPRP----TFFGGEI----QIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 178 ALerGdY~qAIelLE~Ale~~~~~----S~lGGEA----QmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
--.-|+|.+|+..-+.++.+.+.. ... |.. -+--+.|+++.|+.++|+.-++.-
T Consensus 65 ~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 65 LAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 346799999999999999887633 332 333 333467999999999999988753
No 277
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.25 E-value=1.1e+02 Score=29.86 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSKNIR 242 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~qVR 242 (287)
+-..|-.+-..|.+++-..||.-|+.++++.-.-.+ .+..-.+-++--|+.- -+.++||+.|++-.+=+...+.-
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 556788888999999999999999999987654333 2334445788889887 89999999999876555444433
No 278
>smart00748 HEPN Higher Eukarytoes and Prokaryotes Nucleotide-binding domain.
Probab=41.21 E-value=39 Score=26.57 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
+.|+..++.+...++.|.|..|+-+..++++
T Consensus 2 ~~A~~~l~~A~~~~~~g~y~~a~f~aqqavE 32 (113)
T smart00748 2 RRAKRFLEAAKLDLEKGFYDLAAFLSQQAAE 32 (113)
T ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4577889999999999999887766666554
No 279
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.51 E-value=48 Score=33.41 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=40.9
Q ss_pred hcCCHHHHHHHHHHHHhhCCC-----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 180 GKGMYGRAIEFLEGALTIIPR-----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~-----~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
--|||.+|++.|+++ ..... ......-+.+.+..||.=.+|..+||..+..+.
T Consensus 134 LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 134 LLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999983 32221 133344678899999999999999999988765
No 280
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=40.07 E-value=43 Score=28.21 Aligned_cols=55 Identities=22% Similarity=0.203 Sum_probs=32.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
.|+..|++.++=.++.++.... -.| -...|+...| --.|. +|||++||-||.-.+
T Consensus 17 ~A~~~~d~~~~Nr~~~k~~~~~-----------~eL---k~r~gd~r~a---Ll~LL-~hpn~~VRl~AA~~~ 71 (106)
T PF09450_consen 17 EAIDRGDARTANRLYDKMIRIY-----------DEL---KSRGGDQRDA---LLPLL-KHPNMQVRLWAAAHT 71 (106)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHH-----------HHH---HHSTT-GGGG---GGGGG-GSS-HHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHHHHH-----------HHH---HhcCcchHHH---HHHHH-cCCChhHHHHHHHHH
Confidence 5788899999888888866521 111 0112223333 33566 799999999998754
No 281
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.02 E-value=1e+02 Score=34.39 Aligned_cols=64 Identities=9% Similarity=0.005 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
........+...|+|++|+++++.+++..|..-. +++.++..|...++..+|..+ +-|. .++..
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~~~~~~~~lv-~~l~-~~~~~ 96 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSRRPLNDSNLL-NLID-SFSQN 96 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhhcchhhhhhh-hhhh-hcccc
Confidence 3444455666999999999999988885554444 899999999999999999888 4443 45443
No 282
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=39.99 E-value=35 Score=26.22 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
+-.++++.|...- ..+.+-..=. .+. .-..-..|. +||+++|+.-|+.|+..+.
T Consensus 17 ~~~~~l~~L~~L~-~~~~t~~~L~--------------~T~-iG~~v~~Lr-kh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 17 EVSRCLDILKKLK-KLPITVDLLE--------------ETR-IGKKVNGLR-KHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred CHHHHHHHHHHHh-cCCCCHHHHH--------------HCc-HHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence 3556777777643 3554433211 121 112356788 8999999999999987764
No 283
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.89 E-value=77 Score=24.49 Aligned_cols=39 Identities=21% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG 206 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG 206 (287)
+-..+..|...+..|++..|+..|+.++.......+..+
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~ 79 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRC 79 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence 334778888899999999999999999998887766533
No 284
>PRK09687 putative lyase; Provisional
Probab=39.86 E-value=1.4e+02 Score=28.03 Aligned_cols=75 Identities=7% Similarity=-0.145 Sum_probs=55.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----ADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~----EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
.+..+|..-.-.+++..+..++... + ..++...|.++-..|.. ++++.+...+..++|++.||..|-..|
T Consensus 42 ~A~~aL~~~~~~~~~~~l~~ll~~~---d---~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aL 115 (280)
T PRK09687 42 SSIRVLQLRGGQDVFRLAIELCSSK---N---PIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINAT 115 (280)
T ss_pred HHHHHHHhcCcchHHHHHHHHHhCC---C---HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3556666666677777777765411 2 35888889888888874 567888877743899999999999999
Q ss_pred HHhcC
Q 023077 250 YILQA 254 (287)
Q Consensus 250 yILEA 254 (287)
.-+-.
T Consensus 116 G~~~~ 120 (280)
T PRK09687 116 GHRCK 120 (280)
T ss_pred hcccc
Confidence 88854
No 285
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.58 E-value=1.9e+02 Score=29.70 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 168 AQLMFELGQKAY-GKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aAL-erGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
|...|+-|.-.| +--+++.|-.+|++++.....+ .++=-.++..|+..|...|... |+..|++.+..+
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~ 129 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDS 129 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHH
Confidence 555666666666 6677888888888887766552 2223467778888888888888 888888776433
No 286
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=4.8e+02 Score=27.68 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
....+.--.-.|.|..+|.+||.++...+-.+ ...-|+....+++..++|..-|+.-....|+.+-...-=+.|.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-----LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-----LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhccccH-----HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 33445556778999999999999998655433 4556777788999999999999887767887765555444444
Q ss_pred HhcC
Q 023077 251 ILQA 254 (287)
Q Consensus 251 ILEA 254 (287)
-=+.
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 3333
No 287
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.61 E-value=50 Score=36.62 Aligned_cols=84 Identities=14% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 023077 150 VRRELEKVAKEQAERR--------ATAQLMFELGQKAYGK----G---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (287)
Q Consensus 150 v~~~L~~~a~~~a~~~--------e~ae~~yeaG~aALer----G---dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAt 214 (287)
+..||=.+|-..=+|. |-.+..|.+|.+-|++ | .|.+|+.-|+..-. |+..--=.+..|.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 560 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-----GVGAPLEYLGKAL 560 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-----CCCCchHHHhHHH
Confidence 4455666665554443 4467888899888875 3 58888888887433 2222236788999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC
Q 023077 215 AYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 215 AYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+||..|+.++=|..|.--.+++|+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~ 584 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQ 584 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999888765556664
No 288
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=38.30 E-value=63 Score=33.97 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI 226 (287)
|-..-.+|...+.-|+|+..|.+|++|++.--..-..=.-|.-+|-.||-=.++.++|+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl 75 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKAL 75 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHH
Confidence 55556679999999999999999999997433322222334555555655555555554
No 289
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.28 E-value=1e+02 Score=32.87 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHH-------------HHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQI-------------WLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQm-------------wLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
|+--|+.++.+.++....++-+-+.|+ ++|.+|++.++.-+|.+||-.-. ..+++.+.
T Consensus 387 Yd~iiknl~e~~elPG~~~D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~---------sylqe~~~ 457 (593)
T KOG2460|consen 387 YDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAY---------SYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence 666777888877777777777665554 67899999999999999997765 34666666
Q ss_pred HhcCCC
Q 023077 251 ILQAPK 256 (287)
Q Consensus 251 ILEAPk 256 (287)
+|++++
T Consensus 458 ~l~s~~ 463 (593)
T KOG2460|consen 458 ELESFK 463 (593)
T ss_pred hhhchh
Confidence 666664
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=37.95 E-value=2.8e+02 Score=24.24 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
.+..-..++..|+|..+..+++++-.......+ .-.+...+-+.++.++|+...|-.++-..
T Consensus 76 ~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 76 CLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 344445555555555555555555444333211 11233444444445555555544444333
No 291
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=37.94 E-value=62 Score=26.03 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Q 023077 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPK 256 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPk 256 (287)
|--.+|-.+|...=.++|-... -.+..++-|-|.|+..+|+++-.... . .+|..|++++.+|.
T Consensus 8 ~L~~qa~aiLnvlPqLIpD~~~----r~vC~alllfGLne~~~A~~~La~~~----~----~eA~~Lr~lf~~~~ 70 (75)
T PRK15356 8 SLISQVHAMLPALTVIVPDKKL----QLVCLALLLAGLNEPLKAAKILSDID----L----PEAMALRLLFPAPN 70 (75)
T ss_pred chHHHHHHHHHhhhhhcCCHHH----HHHHHHHHHHhcCcHHHHHHHHhcCC----c----HHHHHHHHHhcCCc
Confidence 3345555566554444444333 45678899999999999998755443 3 47899999999984
No 292
>PRK11906 transcriptional regulator; Provisional
Probab=37.09 E-value=94 Score=32.11 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
|...|-.|...+=.|+...|+++++.++...|..-.. +-+++|+-|=| ....++||+||-+=+....
T Consensus 372 A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 438 (458)
T PRK11906 372 ASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA-VVIKECVDMYV--PNPLKNNIKLYYKETESES 438 (458)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH-HHHHHHHHHHc--CCchhhhHHHHhhcccccc
Confidence 5677888888889999999999999999977766553 33555554433 4678999999977663333
No 293
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.07 E-value=3.7e+02 Score=25.48 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 140 EETEEEKRMRVRRELEKVAKEQAERRAT 167 (287)
Q Consensus 140 ~~~~~~~~~rv~~~L~~~a~~~a~~~e~ 167 (287)
+..+++-|.+-+++|+.-=+.+-+.++.
T Consensus 127 ek~k~ElrekAkKelddwy~~~~ek~~k 154 (216)
T KOG4031|consen 127 EKLKEELREKAKKELDDWYDQQNEKLEK 154 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666655544444444
No 294
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=37.06 E-value=43 Score=38.30 Aligned_cols=63 Identities=19% Similarity=0.113 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH------HHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIE------FLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIe------lLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
..++..++.|+.++.+|..+.|.+ +++.+.... .+.-++....|++-|...|+.++||+.|++
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~---h~~~~~~~~~La~l~~~~~d~~~Ai~~~~k 998 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVL---HPEVASKYRSLAKLSNRLGDNQEAIAQQRK 998 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhc---chhHHHHHHHHHHHHhhhcchHHHHHhccc
Confidence 346778999999999999998888 555433322 233457899999999999999999999975
No 295
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=36.80 E-value=1.4e+02 Score=31.20 Aligned_cols=133 Identities=15% Similarity=0.248 Sum_probs=75.8
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023077 105 MRRRVKEI-EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGM 183 (287)
Q Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGd 183 (287)
+||.+... ++|.|+-+|+.+++..++.--..-++.=..=--|=.-||.+|-+.|.- ...+.|+.+..+...
T Consensus 127 LkKQiaK~qQq~tE~~RKe~d~~k~aa~~r~qfe~~c~qlglkG~nvr~ElLelasd------LPs~fyei~~v~i~~-- 198 (505)
T KOG2607|consen 127 LKKQIAKVQQQMTELDRKEADIKKSAALSRTQFEDACRQLGLKGNNVRRELLELASD------LPSTFYEILEVIISD-- 198 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHhCCccchHHHHHHHHHhc------CcHHHHHHHHHHHhh--
Confidence 55665544 568899999998887665433210000000001223567777776662 233466666665554
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCccc
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKISQEE 263 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPkLkrp~eW 263 (287)
...||.++-.++..+...-. .....-+-+.+.|.++-||..|-+| .+.+++-..++|++.
T Consensus 199 i~~aiDyYqa~v~~v~~g~~----------------k~~~qVLpiL~~i~Erg~n~Tvyew----~~g~~pd~VE~p~~e 258 (505)
T KOG2607|consen 199 ITGAIDYYQAYVQDVHTGKD----------------KPLRQVLPILKYIRERGPNLTVYEW----SEGLDPDNVESPENE 258 (505)
T ss_pred hhHHHHHHHHHHHHHhccCC----------------ccHHHHhHHHHHHHhcCCCcceeec----cccCCcccccCCchh
Confidence 77888888777653331111 0112333455666656669999888 566666678888777
Q ss_pred cc
Q 023077 264 MV 265 (287)
Q Consensus 264 ~v 265 (287)
+.
T Consensus 259 ~l 260 (505)
T KOG2607|consen 259 NL 260 (505)
T ss_pred hh
Confidence 64
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=36.39 E-value=2.2e+02 Score=25.50 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCC-----------------------------CCchHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT-IIPRP-----------------------------TFFGGEIQIWLAMAYE 217 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale-~~~~~-----------------------------S~lGGEAQmwLAtAYq 217 (287)
....++.++-...+|+-..||..|...+. ..... ...-+++.+.++.-.+
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999887 22221 1223466666676666
Q ss_pred Hc------CChHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHhc
Q 023077 218 AN------NRHADCIALYKQLESNHPSKN--IRRQAADLRYILQ 253 (287)
Q Consensus 218 a~------Gq~EkAIALCQ~L~~~HPd~q--VRqQAKqLLyILE 253 (287)
.. +..++++..|+..++-+|... ...||.-.-..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLE 307 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 67 999999999999996665433 2345555544444
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=36.27 E-value=2.9e+02 Score=24.07 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHH--HHHHHHHHHcCChHHHHHHHHHH---HHhCCCH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQ--IWLAMAYEANNRHADCIALYKQL---ESNHPSK 239 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQ--mwLAtAYqa~Gq~EkAIALCQ~L---~~~HPd~ 239 (287)
.+......+.|.-.++-|++..|++.+..+...+ +..|-.+. +-++...--.|+.....+...+. .+...+.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~ 109 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDW 109 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchH
Confidence 3445567788999999999999999999977643 33333444 44555666677777666654444 3232333
Q ss_pred HHHH--HHHHHHHHhcCCCCCCCccccccc
Q 023077 240 NIRR--QAADLRYILQAPKLKISQEEMVTI 267 (287)
Q Consensus 240 qVRq--QAKqLLyILEAPkLkrp~eW~v~I 267 (287)
..+. .+-.-|+.|-.-+++....-.+++
T Consensus 110 ~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 110 ERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 4443 233335555555555554444444
No 298
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.31 E-value=1.8e+02 Score=32.80 Aligned_cols=12 Identities=42% Similarity=0.758 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 023077 110 KEIEEMRELEKK 121 (287)
Q Consensus 110 ~~~~~~~~~~~~ 121 (287)
.+|+|.-|.|++
T Consensus 927 rk~qE~~E~ER~ 938 (1259)
T KOG0163|consen 927 RKIQELAEAERK 938 (1259)
T ss_pred HHHHHHHHHHHH
Confidence 334444344433
No 299
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.31 E-value=1.2e+02 Score=20.49 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=8.0
Q ss_pred HHHHHHhcCCHHHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEF 190 (287)
Q Consensus 174 aG~aALerGdY~qAIel 190 (287)
-|-..+.+|+|.+|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444555555555555
No 300
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=35.04 E-value=3.2e+02 Score=25.66 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-----------HcCChHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-----------ANNRHADCIALYKQLES 234 (287)
Q Consensus 168 ae~~yeaG~aALerGdY--~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq-----------a~Gq~EkAIALCQ~L~~ 234 (287)
|+..++.++.++..|.= ..-..-|+.+.+....+.. ..+.++.+.+|. ..++.+.|+++|++-..
T Consensus 129 aeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~--vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~ 206 (230)
T PHA02537 129 AEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDE--VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQ 206 (230)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHH
Confidence 67788888888888871 1112334444443444444 456666666663 34677899999999998
Q ss_pred hCCCHHHHHHHHHHHHHhcC
Q 023077 235 NHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 235 ~HPd~qVRqQAKqLLyILEA 254 (287)
-||+..|++.=+++-.-|.+
T Consensus 207 l~~k~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 207 LNDKCGVKKDIERLERRLKA 226 (230)
T ss_pred hCCCCChHHHHHHHHHHHhh
Confidence 99999999887777655543
No 301
>PRK09687 putative lyase; Provisional
Probab=34.70 E-value=2.5e+02 Score=26.34 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSKNIRRQAADLRYI 251 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~qVRqQAKqLLyI 251 (287)
-..||..|-.++.. .++ .++.|-+.|+-..+ ..+.++..--.+. .++++.||.-|-..|.-
T Consensus 157 ~~~ai~~L~~~L~d--~~~----~VR~~A~~aLg~~~~~~~~~~~~L~~~L-~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 157 DEAAIPLLINLLKD--PNG----DVRNWAAFALNSNKYDNPDIREAFVAML-QDKNEEIRIEAIIGLAL 218 (280)
T ss_pred CHHHHHHHHHHhcC--CCH----HHHHHHHHHHhcCCCCCHHHHHHHHHHh-cCCChHHHHHHHHHHHc
Confidence 35666666665551 111 36666666665543 2445555444444 46666666666666543
No 302
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=34.67 E-value=1e+02 Score=23.24 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..|...+..|..+=..|+|.+|+.++..++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777788888888888887766
No 303
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.54 E-value=1.2e+02 Score=30.53 Aligned_cols=61 Identities=20% Similarity=0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-chHHHHHHHHHHHHH--cCChHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-FGGEIQIWLAMAYEA--NNRHADCIALYKQ 231 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~-lGGEAQmwLAtAYqa--~Gq~EkAIALCQ~ 231 (287)
....+..+|.+++|+.|.++|+.++........ -.-+....|+.||.. .-++++|+.....
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 344567899999999999999999976433221 123666788888886 6778888877763
No 304
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.45 E-value=3.4e+02 Score=26.83 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=44.4
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
..+.|..|.=+|+..+...+++.. .++.+|.+....|+.++|-.+-+...++.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~----llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPL----LLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChH----HHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 455799999999998886776666 89999999999999999999998876443
No 305
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=34.40 E-value=48 Score=25.27 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 229 YKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 229 CQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
-..|. +|++++|+..|+.|+..+..
T Consensus 49 V~~Lr-kh~~~~i~~~A~~Lv~~Wk~ 73 (76)
T cd00183 49 VNSLR-KHSNEKIRKLAKALIKSWKK 73 (76)
T ss_pred HHHHH-cCCcHHHHHHHHHHHHHHHH
Confidence 56787 89999999999999877643
No 306
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=34.38 E-value=37 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHHHHHHH-cCChHHHHHHHHHHH
Q 023077 201 PTFFGGEIQIWLAMAYEA-NNRHADCIALYKQLE 233 (287)
Q Consensus 201 ~S~lGGEAQmwLAtAYqa-~Gq~EkAIALCQ~L~ 233 (287)
++-.|.++--||.....+ ....++|+.+||.|.
T Consensus 16 ~~F~G~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll 49 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNFEGFVRDREEAVQLGQELL 49 (74)
T ss_dssp CEEEHHHHHHHHHHTSCTSTSSHHHHHHHHHHHH
T ss_pred CEeEhHHHHHHHHHhccccccCHHHHHHHHHHHH
Confidence 444688888899855444 789999999999998
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=34.28 E-value=1.7e+02 Score=30.93 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
-..-++.++-.|-+|+|..|+-+-.=+....| |+ ++.=+|-++...+-+.++|-...+.|-
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~---~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SP---QAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cH---HHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34578889999999999999977666555444 54 477777788777777777777776664
No 308
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=33.72 E-value=98 Score=17.84 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=7.7
Q ss_pred ChHHHHHHHHHHHHhCC
Q 023077 221 RHADCIALYKQLESNHP 237 (287)
Q Consensus 221 q~EkAIALCQ~L~~~HP 237 (287)
+.++|..+|++.+..+|
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 34444455554443333
No 309
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=33.66 E-value=1.6e+02 Score=32.51 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=33.9
Q ss_pred HHHHHhcCCHHHHHH--HHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIE--FLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 175 G~aALerGdY~qAIe--lLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
|+..++.|+=+-|.. +|-.++...|.+- +++++|....++.|+.+.|-..|+.-
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~----eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNH----EAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccchHHHHHHHHHH
Confidence 344445554444444 5555555444333 58888888888999888887776643
No 310
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=2.8e+02 Score=29.70 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHH---HHHHhCCCHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYK---QLESNHPSKNIR 242 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ---~L~~~HPd~qVR 242 (287)
+...|--|.-||.+++|.+|-.+|-..++... ..-++-+.-..+|.-.....|++-++...-+ +|.++-||--|+
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence 45578889999999999999999999997664 3356677778888889999999998876654 566788888888
Q ss_pred HHHHHHHHH
Q 023077 243 RQAADLRYI 251 (287)
Q Consensus 243 qQAKqLLyI 251 (287)
=|.-.++.-
T Consensus 525 Lws~si~~~ 533 (629)
T KOG2300|consen 525 LWSSSILTD 533 (629)
T ss_pred HHHHHHHHH
Confidence 888776543
No 311
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=33.43 E-value=2.3e+02 Score=24.36 Aligned_cols=67 Identities=15% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH--HHcCChHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY--EANNRHADCIALYKQL 232 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY--qa~Gq~EkAIALCQ~L 232 (287)
..+...++.-...+.+++|..|-.++..+-....+...+.-++.+-...++ ...|+.+.++..|+++
T Consensus 126 ~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~ 194 (220)
T TIGR01716 126 RVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQA 194 (220)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 346677888889999999999999988865544334455556665555554 3567644444433333
No 312
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.96 E-value=3.6e+02 Score=24.04 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN---------------RHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G---------------q~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
++.+|+.+|..+++.-. +.+++++. .+...| +...|..+++... ....+.....-+
T Consensus 206 d~~~A~~wy~~Aa~~g~------~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~ 276 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD------GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC-ELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHCCC------HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH-HcCChhHHHHHH
Confidence 78899999999887333 56778887 555555 7788888888887 566666555555
No 313
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=32.70 E-value=1.7e+02 Score=27.15 Aligned_cols=26 Identities=38% Similarity=0.768 Sum_probs=15.7
Q ss_pred cHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 023077 100 DWEKE-MRRRVKEIEEMRELEKKAEELQSKAEE 131 (287)
Q Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (287)
|||.- ++|. +.+|+.+.+..+.....
T Consensus 95 dwEevrLkrE------La~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRE------LAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHH------HHHHHHHHHHHHHHHHh
Confidence 89987 4544 44555566655555544
No 314
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=32.59 E-value=1.2e+02 Score=21.81 Aligned_cols=39 Identities=38% Similarity=0.442 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHH
Q 023077 114 EMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEK 156 (287)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~ 156 (287)
..|++|-|.-+|+.++++.+-. +++=+++=...|++|.+
T Consensus 5 rkR~IElk~~elrd~LEe~g~~----~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGYS----EEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHh
Confidence 3477888888899998887742 33334444555555543
No 315
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=32.55 E-value=3.9e+02 Score=29.26 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 117 ELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
-||+-+-.+++-++.++.-... |.++. +-+ ....-..|..++.-...|+|..|..++..|+.
T Consensus 338 ~le~Lvt~y~~~L~~~~~f~~~-D~~~~-----------E~P------ttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 338 FLEKLVTSYQHSLSGTGMFNFL-DDGKQ-----------EPP------TTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred HHHHHHHHHHhhcccccCCCcc-ccccc-----------CCc------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4666677788888777532111 11110 011 22355788999999999999999999999998
Q ss_pred hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Q 023077 197 IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLK 258 (287)
Q Consensus 197 ~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPkLk 258 (287)
+||--.+..|..|+-|.-+|..+.|-++...-. .--.+...-+.+-.-|-|-|-..+
T Consensus 400 ----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 400 ----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-ELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred ----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-hccchhHHHHHHHHHHHHHccccH
Confidence 777777889999999999999999999988776 454555555555555666665443
No 316
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=32.51 E-value=1.9e+02 Score=24.89 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcC------C----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 207 EIQIWLAMAYEANN------R----HADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 207 EAQmwLAtAYqa~G------q----~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
.+-.||..+....| + .+..+....++. ..|+++||+.|++++-.|
T Consensus 150 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l-~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 150 ECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLL-SDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHH-TSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHH
Confidence 45567777777777 1 144666666666 799999999999998777
No 317
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.51 E-value=1.5e+02 Score=29.76 Aligned_cols=28 Identities=39% Similarity=0.534 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023077 103 KEMRRRVKEIEEMRELEKKAEELQSKAE 130 (287)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (287)
.++++|--|-++.+|||..||+-..+.+
T Consensus 321 ~e~kkrqlerqekqeleqmaeeekkr~e 348 (445)
T KOG2891|consen 321 AEIKKRQLERQEKQELEQMAEEEKKREE 348 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567776777777777777777555443
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.49 E-value=2.5e+02 Score=26.58 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
...-|.+||+|++..| .+. +.++.+..++....+.++.....+.+..+||+ ...=|-+.|-+..
T Consensus 47 ~E~klsilerAL~~np-~~~---~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q 110 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSE---RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHH
Confidence 4556788999998744 333 47888888888999999999999999977776 5556666665544
No 319
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=31.73 E-value=2e+02 Score=20.68 Aligned_cols=47 Identities=19% Similarity=0.158 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQAP 255 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAP 255 (287)
.++...+.+....| ..+++.....+. ++|++.||.+|-..|..+..|
T Consensus 15 ~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 15 QVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp HHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCH
Confidence 46777777776665 568888888888 899999999999988876544
No 320
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=31.58 E-value=3.1e+02 Score=23.17 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 023077 152 RELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (287)
Q Consensus 152 ~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq 217 (287)
.+++..+.+.-..--.|+..+-.++.+.++|+|..|-++|+.+-+.. ..+-++|.-|.+...
T Consensus 15 e~~e~~~~~II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l----~~AH~~qt~Liq~Ea 76 (115)
T PRK10454 15 EELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRMAL----NEAHLVQTKLIEGDQ 76 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 44666666555555668999999999999999999999999977632 233446666664433
No 321
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.43 E-value=2.5e+02 Score=21.84 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023077 113 EEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLE 192 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE 192 (287)
++++.|...++.|-+.+.+.. .+.-..+|.++.+.+.....+...+ +.. -+..+.+++...+
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~----------~~~~~~~r~~~~~~~~~a~~~~~~~---~~~-----~~~~~~~~~~~~~ 66 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLA----------GEKADEARDRAEEALDDARDRAEDA---ADQ-----AREQAREAAEQTE 66 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHH---HHH-----HHHHHHHHHHHHH
Confidence 456667777777766665555 2233444555544444333333321 111 1234578888899
Q ss_pred HHHhhCCCCCCchHHHHHHHHH
Q 023077 193 GALTIIPRPTFFGGEIQIWLAM 214 (287)
Q Consensus 193 ~Ale~~~~~S~lGGEAQmwLAt 214 (287)
.++...|..+ +|.-+-+.++.
T Consensus 67 ~~V~e~P~~s-vgiAagvG~ll 87 (94)
T PF05957_consen 67 DYVRENPWQS-VGIAAGVGFLL 87 (94)
T ss_pred HHHHHChHHH-HHHHHHHHHHH
Confidence 9998776554 33333344433
No 322
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=31.12 E-value=81 Score=24.88 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH-------HHHhCCCHHHHH
Q 023077 209 QIWLAMAYEANNRHADCIALYKQ-------LESNHPSKNIRR 243 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~-------L~~~HPd~qVRq 243 (287)
.+..|.-++..|+.++||.+|+. +.+..||...+.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 34456667888888888877764 444667766543
No 323
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.11 E-value=2.6e+02 Score=21.96 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~ 198 (287)
.+...+..|...=..|+|.+|+.++..+++.+
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 34445566666777899999999999888743
No 324
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.10 E-value=1.5e+02 Score=32.21 Aligned_cols=22 Identities=45% Similarity=0.484 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccC
Q 023077 112 IEEMRELEKKAEELQSKAEEDD 133 (287)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~ 133 (287)
-.|+.|||.|-.+|+|.+++-.
T Consensus 92 s~EL~ele~krqel~seI~~~n 113 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEIN 113 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 3688999999999999886543
No 325
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.10 E-value=1.2e+02 Score=25.88 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
++.|.-.+.+.|+.++|.. +|+-|. -||+|. +||.|++.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~-V~~qP~------~LL~i~q~ 105 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALK-VCPQPA------ELLQIYQK 105 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH-TSSSHH------HHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHH------HHHHHHHh
Confidence 3444555567788888866 888888 899987 78888864
No 326
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=30.66 E-value=1.7e+02 Score=26.94 Aligned_cols=16 Identities=44% Similarity=0.601 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023077 107 RRVKEIEEMRELEKKA 122 (287)
Q Consensus 107 ~~~~~~~~~~~~~~~~ 122 (287)
||..-|+..|.+=++|
T Consensus 12 ~r~~g~~~aR~vF~~a 27 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRA 27 (280)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHH
Confidence 4555555555555554
No 327
>PF13206 VSG_B: Trypanosomal VSG domain
Probab=30.64 E-value=1.3e+02 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023077 98 EYDWEKEMRRRVKEIEEMRELEKKAEELQSKAE 130 (287)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (287)
.+.|.+.++.=++++++|+....+++.++.++.
T Consensus 317 ~IpW~~~l~~a~~~L~~~~~~~~~~~~~~~~l~ 349 (351)
T PF13206_consen 317 KIPWLKKLEEAADKLEEAEKAAAEAQALATQLE 349 (351)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999988875
No 328
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.56 E-value=94 Score=31.85 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
-+...+.|+--|--|+|+-++.-|+.|+.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 34445555555555555555555555554
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.19 E-value=1.1e+02 Score=21.60 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|.-+.+-++-|+|..|.++|+.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36778889999999999999999996
No 330
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=30.15 E-value=1.3e+02 Score=30.87 Aligned_cols=47 Identities=26% Similarity=0.223 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA 218 (287)
Q Consensus 168 ae~~yeaG~aALerGd---Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa 218 (287)
|=..|-.|...+.+++ +..|+++|++|++..|.+.. ++-+|+.||..
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~ 388 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIV 388 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHH
Confidence 4445666777776665 89999999999998887755 55556666644
No 331
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=29.90 E-value=1e+02 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.6
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 023077 211 WLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 211 wLAtAYqa~Gq~EkAIALCQ~ 231 (287)
..|.-++..|+.++|+.+|+.
T Consensus 10 ~~Av~~D~~g~~~~A~~~Y~~ 30 (69)
T PF04212_consen 10 KKAVEADEAGNYEEALELYKE 30 (69)
T ss_dssp HHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 334445556666666666553
No 332
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.66 E-value=2.9e+02 Score=26.98 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CC-----CCchH---------------HHHHHHHHHHHHcCCh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RP-----TFFGG---------------EIQIWLAMAYEANNRH 222 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~-----~~-----S~lGG---------------EAQmwLAtAYqa~Gq~ 222 (287)
....++.+..+..+|++..|-+++|.|+=... .- +...| .+.+-.+.+....|-.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 45788999999999999999999999863222 11 12222 3444456788899999
Q ss_pred HHHHHHHHHHHHhCCCH------------H-HHHHHHHHHHHhcCCCCCCCcccccccCCC
Q 023077 223 ADCIALYKQLESNHPSK------------N-IRRQAADLRYILQAPKLKISQEEMVTIPLI 270 (287)
Q Consensus 223 EkAIALCQ~L~~~HPd~------------q-VRqQAKqLLyILEAPkLkrp~eW~v~IPdL 270 (287)
.-|..+|+-|.+-.|.. . -.++-+-|+...+.|.-....+|...+|.+
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~ 180 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF 180 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence 99999999999656651 1 123334466666666544455666667765
No 333
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.56 E-value=1.3e+02 Score=20.29 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHH--HHHHH
Q 023077 207 EIQIWLAMAYEANNRHADCIAL--YKQLE 233 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIAL--CQ~L~ 233 (287)
+..+.++-.+..+|+.++|+.+ |+-|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~ 30 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLC 30 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3467889999999999999999 54665
No 334
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=29.15 E-value=3.2e+02 Score=26.65 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchH
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGG 206 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGG 206 (287)
.+.-+...+.-.+..-+||.|++|.++..-.+.+.|.+.+.|.
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ 141 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV 141 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence 3445667788888999999999999999999998888888876
No 335
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=28.90 E-value=19 Score=36.89 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
-++....+.++.++++.|++..|..+|..+-. .+.+...-.+..+..|..+...|+.+.|+.+...+
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~-~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~ 87 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDP-QQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ 87 (536)
T ss_dssp --------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC
Confidence 45577889999999999999999999998652 22222323367788888888899999999988754
No 336
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=28.88 E-value=2.1e+02 Score=30.26 Aligned_cols=59 Identities=24% Similarity=0.135 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
.+..|.-|-+.|..++||+.+...+...|..+.+| ++..|+-+|--.++..++-++-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~--IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLN--IRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhh--HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34567788899999999999999998888766664 889999999988888887666443
No 337
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=28.70 E-value=77 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 209 QIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.--|+.-|.+.|.+.+|+.+-++|.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3457788888888888888888888
No 338
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.67 E-value=3.3e+02 Score=30.78 Aligned_cols=15 Identities=0% Similarity=0.235 Sum_probs=7.5
Q ss_pred EEeeccccccccccc
Q 023077 65 VVTRGKVNSKVNAVD 79 (287)
Q Consensus 65 ~~~~~~~~~~~~~~~ 79 (287)
.+-++++-+..||+-
T Consensus 279 ~~r~~rs~~sis~~~ 293 (1118)
T KOG1029|consen 279 SFRSSRSANSISGLE 293 (1118)
T ss_pred ccccccCCCCccccc
Confidence 344555555555543
No 339
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=28.54 E-value=1.4e+02 Score=32.94 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
..+|+.||.|++..+.+.. +-++|++=|.-.++.+.|...|+...+-.|..++.-|
T Consensus 461 ~kslqale~av~~d~~dp~----~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~w 516 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPL----VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAW 516 (799)
T ss_pred HHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHH
Confidence 4566666666664444443 6666666666666666666666666633344444433
No 340
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=28.36 E-value=81 Score=28.92 Aligned_cols=28 Identities=39% Similarity=0.595 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
....+.|...|+.++|.+|+.+++-++.
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4577899999999999999999997764
No 341
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=28.09 E-value=3e+02 Score=26.51 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 140 EETEEEKRMRVRRELEKVAKEQAERR 165 (287)
Q Consensus 140 ~~~~~~~~~rv~~~L~~~a~~~a~~~ 165 (287)
=|.+-|||+++-|+|+++-++....+
T Consensus 79 Lea~VEkrD~~IQqLqk~LK~aE~iL 104 (272)
T KOG4552|consen 79 LEAHVEKRDEVIQQLQKNLKSAEVIL 104 (272)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999888544333
No 342
>PF05942 PaREP1: Archaeal PaREP1/PaREP8 family; InterPro: IPR010268 This family consists of several archaeal PaREP1 proteins, the function of the family is unknown.; PDB: 2Q00_A 2JPU_A.
Probab=27.69 E-value=1e+02 Score=25.02 Aligned_cols=33 Identities=24% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
|++.+...++.|..-+++|++.+|-+.+=+|+.
T Consensus 2 rl~~a~~~l~~A~e~L~~G~~rqAaeK~~~A~~ 34 (115)
T PF05942_consen 2 RLEEAEKELEEADELLEKGDLRQAAEKAFKAVE 34 (115)
T ss_dssp --BHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788899999999999999999887766665
No 343
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=27.54 E-value=1.5e+02 Score=29.77 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh-------HHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH-------ADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~-------EkAIALCQ~L~ 233 (287)
.--.|+.|...+-+++|.+|...+...++. +.-|+ +--.+..|-+|...|+. ++|..++++..
T Consensus 305 ~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSk--a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 305 HLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSK--AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHH--HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 345899999999999999999999998873 33343 34567788999999999 99999998876
No 344
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=5.2e+02 Score=28.73 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023077 114 EMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEG 193 (287)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~ 193 (287)
-|++|..+..++|++++-.+ ..-.+=|..-|.--+.++==--+-+.=-++.---..|+.=.+...+++|+.++..|..
T Consensus 80 ai~eL~~~i~eiks~ae~Te--~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqa 157 (793)
T KOG2180|consen 80 AIEELFQKIQEIKSVAESTE--AMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQA 157 (793)
T ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHH
Confidence 36677777777777765432 1222233333333232222222222223333333455555666789999999999998
Q ss_pred HHhhCC
Q 023077 194 ALTIIP 199 (287)
Q Consensus 194 Ale~~~ 199 (287)
+++..+
T Consensus 158 i~~ll~ 163 (793)
T KOG2180|consen 158 ILQLLN 163 (793)
T ss_pred HHHHHH
Confidence 887554
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.17 E-value=1.4e+02 Score=30.12 Aligned_cols=62 Identities=13% Similarity=0.011 Sum_probs=53.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.++..-.-..|+.-|+++++.-+....-|-.|.-.++..|-+.|+.++...-|++|. ++--+
T Consensus 36 K~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL-TYIkS 97 (440)
T KOG1464|consen 36 KGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL-TYIKS 97 (440)
T ss_pred ccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHH
Confidence 345566788899999999998888899999999999999999999999999999987 55333
No 346
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=27.17 E-value=1.5e+02 Score=33.24 Aligned_cols=70 Identities=11% Similarity=0.114 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..+..+..--.+++++++..|++.+++++..+|...- +..+-|......|+.++|..+-+.+.-..|+
T Consensus 6 ~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~ 75 (932)
T KOG2053|consen 6 LAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGLKGT 75 (932)
T ss_pred hccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccCCCC
Confidence 445666777888999999999999999999997775544 8888999999999999999888888733333
No 347
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.08 E-value=2.4e+02 Score=29.06 Aligned_cols=63 Identities=17% Similarity=0.170 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----------------------------CCCCchHHHHHHHHHHHHHcC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIP-----------------------------RPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~-----------------------------~~S~lGGEAQmwLAtAYqa~G 220 (287)
..++.|+.|+-.|||.++...|..|-.... ++--.++-+-++++.-|+..+
T Consensus 60 ~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~n 139 (449)
T COG3014 60 WDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLN 139 (449)
T ss_pred HhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhc
Confidence 478999999999999999998877643211 111124578899999999999
Q ss_pred ChHHHHHHHHHH
Q 023077 221 RHADCIALYKQL 232 (287)
Q Consensus 221 q~EkAIALCQ~L 232 (287)
+.++|.-=++.-
T Consensus 140 D~~~ArVEfnRa 151 (449)
T COG3014 140 DSAKARVEFNRA 151 (449)
T ss_pred chhhhHHHHHHH
Confidence 999997655443
No 348
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=27.06 E-value=2.5e+02 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|-...+.|..+=+.|+|..||.++..++.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344566677777779999999999888776
No 349
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=27.03 E-value=3.8e+02 Score=23.74 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 023077 108 RVKEIEEMRELEKKAEELQSKA 129 (287)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~ 129 (287)
|+|-+++..|||++--+|+.++
T Consensus 69 R~KRv~Qk~eLE~~k~~L~qqv 90 (135)
T KOG4196|consen 69 RVKRVQQKHELEKEKAELQQQV 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888777777655
No 350
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=26.73 E-value=2.9e+02 Score=22.64 Aligned_cols=63 Identities=25% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHH--HHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHH
Q 023077 91 NGNGEKEEYDWEKEMRRRVKEIE--EMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAK 159 (287)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~ 159 (287)
|--.|.+..|+..|+++|++..- +.++.-+...+ .+..++.=. -+.-.+++.-||..|+++..
T Consensus 16 G~v~~k~~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~ms------~~e~~k~~~ev~k~~~~~~~ 81 (93)
T PF06518_consen 16 GKVDPKDVPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSKMS------VEERKKRREEVRKALEKRIK 81 (93)
T ss_dssp TTS-GGGHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTTS-------HHHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHH
Confidence 55567788999999999998543 34444433333 344444333 22234556666776666543
No 351
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.61 E-value=6.7e+02 Score=27.27 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.1
Q ss_pred cccccccCCCC
Q 023077 261 QEEMVTIPLIG 271 (287)
Q Consensus 261 ~eW~v~IPdL~ 271 (287)
..-.|.|+.++
T Consensus 639 ~Gd~V~v~~~~ 649 (782)
T PRK00409 639 VGDEVKYLSLG 649 (782)
T ss_pred CCCEEEEccCC
Confidence 34445555543
No 352
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=26.57 E-value=46 Score=24.31 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.0
Q ss_pred hCCCHHHHHHHHHHHHHhcC
Q 023077 235 NHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 235 ~HPd~qVRqQAKqLLyILEA 254 (287)
.-|.| ++++||++|.||+-
T Consensus 6 ELP~P-iqQsAkqmlnILQE 24 (44)
T PF13080_consen 6 ELPTP-IQQSAKQMLNILQE 24 (44)
T ss_pred hcCch-HHHHHHHHHHHHHH
Confidence 34554 89999999999963
No 353
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=26.47 E-value=8.5e+02 Score=27.75 Aligned_cols=51 Identities=24% Similarity=0.168 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077 144 EEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (287)
Q Consensus 144 ~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~ 198 (287)
+.-+.+...+|+|..+|...++......+.--..|+ --.+|-+++++...-
T Consensus 665 d~i~~~q~eel~Ke~kElq~rL~~q~KkiDh~ERA~----R~EeiPL~e~~~~~~ 715 (988)
T KOG2072|consen 665 DQIKARQIEELEKERKELQSRLQYQEKKIDHLERAK----RLEEIPLIEKAYDER 715 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHhhhhHHHHHHHH
Confidence 344556667788888887777776555444333333 345666666665433
No 354
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=26.39 E-value=1.6e+02 Score=30.68 Aligned_cols=82 Identities=18% Similarity=0.075 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+...++.+..-..-|+-++||.-.+.|+.+.+. +.++.+.-+.||...++.+.|..-|++-.+.-.+..+++--++
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s----yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS----YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 455777888888999999999999999985544 4569999999999999999999999987766666777776655
Q ss_pred HHHHhc
Q 023077 248 LRYILQ 253 (287)
Q Consensus 248 LLyILE 253 (287)
.-..|.
T Consensus 363 A~~aLk 368 (486)
T KOG0550|consen 363 AQLALK 368 (486)
T ss_pred HHHHHH
Confidence 544443
No 355
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=26.14 E-value=54 Score=24.39 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEG 193 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~ 193 (287)
.+.....=..|+.+|||.+|..+|.+
T Consensus 9 P~~~v~~f~~al~~gd~~~a~~~~~~ 34 (111)
T PF12870_consen 9 PEEVVKNFFDALKNGDYEKAYAYLSP 34 (111)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHTB--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhCc
Confidence 44556667789999999999999876
No 356
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=26.10 E-value=7.3e+02 Score=25.49 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023077 143 EEEKRMRVRRELEKVAKEQAERRAT-AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (287)
Q Consensus 143 ~~~~~~rv~~~L~~~a~~~a~~~e~-ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq 221 (287)
..++=+-.-++|..+|...+.+++. .+...+.=+.-+++.---.|..+.+.+......+-. .+-
T Consensus 164 ~~ekwm~clK~l~d~av~~s~kle~alk~Kv~~kkddL~~k~~Yt~~Ky~e~~mk~~~~PKt---------------tn~ 228 (392)
T PF07340_consen 164 KQEKWMACLKELADVAVNASKKLEKALKEKVQQKKDDLKRKCTYTCLKYIEMFMKNLCMPKT---------------TNG 228 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCCC---------------ccc
Confidence 3566677788999999999998877 344444444555555555667777777765554332 233
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 222 HADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
.+.|+++.+.|. +|+...+-.+++.+..+|+-
T Consensus 229 ~sQA~~fL~nlp-~~d~d~v~~~g~~iik~LD~ 260 (392)
T PF07340_consen 229 QSQAKAFLRNLP-QCDPDEVNEYGQKIIKTLDK 260 (392)
T ss_pred HHHHHHHHhccc-cCCHHHHHHHHHHHHHHhhh
Confidence 567999999998 89989999999999999975
No 357
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=26.05 E-value=72 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.284 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 221 RHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
..+.|-++|+.++.-||+ ++.|-+.
T Consensus 2 E~dRAR~IyeR~v~~hp~--~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE--VKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCCC--chHHHHH
Confidence 468899999999977766 5555443
No 358
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=25.91 E-value=2.2e+02 Score=22.49 Aligned_cols=29 Identities=24% Similarity=0.061 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
|......+..+=.+|+|.+||.++..+++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33455556666677887777777666554
No 359
>PRK00068 hypothetical protein; Validated
Probab=25.82 E-value=1.3e+02 Score=33.88 Aligned_cols=34 Identities=29% Similarity=0.324 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC
Q 023077 165 RATAQLMFELGQKAYGKGM---YGRAIEFLEGALTII 198 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGd---Y~qAIelLE~Ale~~ 198 (287)
++.++..|+.+++|+++|| |++|++-|+++++..
T Consensus 930 l~~a~~a~~~a~~Alk~GDw~~yG~a~~~L~~al~~~ 966 (970)
T PRK00068 930 LKEAQDAYNKAIEAQKSGDFAEYGEALKELDDALNKY 966 (970)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4556679999999999997 778999999988743
No 360
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=25.45 E-value=1.6e+02 Score=17.75 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHH-cC---ChHHHHHHHHHHH
Q 023077 207 EIQIWLAMAYEA-NN---RHADCIALYKQLE 233 (287)
Q Consensus 207 EAQmwLAtAYqa-~G---q~EkAIALCQ~L~ 233 (287)
.+++.|+..|.. .| +.++|+.+|++-.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 355666666542 22 5566666666554
No 361
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.31 E-value=1.9e+02 Score=27.08 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhh
Q 023077 113 EEMRELEKKAEELQSKA 129 (287)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ 129 (287)
|.|+++.+.+.|+|.+.
T Consensus 72 ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 72 EKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 362
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=25.31 E-value=7.6e+02 Score=25.43 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023077 107 RRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMR----VRRELEKVAKEQAERRATAQLMFELGQKAYGKG 182 (287)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r----v~~~L~~~a~~~a~~~e~ae~~yeaG~aALerG 182 (287)
||-.=+.++++|+.++.-+-+-++. | |-.+.-..+| +-+-|.++-.= .-+.....|+-++--|+.|
T Consensus 74 kr~~Vla~lkeLe~ev~piv~~le~--P-----d~~~~~~~~k~~~~~l~~L~e~ynf---~~e~i~~lykyakfqyeCG 143 (432)
T KOG2758|consen 74 KRTEVLAELKELEEEVAPIVKVLEN--P-----DLIAALRSDKDRVQNLQHLQEHYNF---TPERIETLYKYAKFQYECG 143 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC--H-----HHHHHHHhhhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcc
Confidence 3334456777777766665554432 2 1122222222 22233332221 1244566999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCc
Q 023077 183 MYGRAIEFLEGALTIIPRPTFF 204 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~l 204 (287)
+|+-|-.+|--+...++.+.+-
T Consensus 144 NY~gAs~yLY~~r~l~~~~d~n 165 (432)
T KOG2758|consen 144 NYSGASDYLYFYRALVSDPDRN 165 (432)
T ss_pred CcccHHHHHHHHHHhcCCcchh
Confidence 9999999999988888877663
No 363
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.04 E-value=2e+02 Score=21.21 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
....|..+=+.|+|.+|+.++..++.
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444446666666666655554
No 364
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=24.92 E-value=2.8e+02 Score=29.62 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Q 023077 144 EEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAM 214 (287)
Q Consensus 144 ~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY---~qAIelLE~Ale~~~~~S~lGGEAQmwLAt 214 (287)
.+++.|.-.+.-+++..+++++..-...=..=-.-|+.|-| +-|+.+||-|..+.. ++. =.+|||.
T Consensus 168 ~~~~~R~e~~~~~r~~krr~rr~~e~e~~~Il~eYy~~gt~~g~ss~~~lfela~ml~k-~~n----d~LWlai 236 (587)
T KOG2475|consen 168 SESRQRLEEEIDQRASKRRERRKWEKERRTILFEYYESGTWHGSSSAVTLFELASMLGK-DNN----DLLWLAI 236 (587)
T ss_pred hHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcceeecCchHHHHHHHHHHhcc-chH----HHHHHHH
Confidence 44455554544344444444443322222222234566665 467788888766443 333 4678774
No 365
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.86 E-value=1.8e+02 Score=25.36 Aligned_cols=51 Identities=24% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTFFGGEIQIWLAMAY 216 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~-----~~S~lGGEAQmwLAtAY 216 (287)
+-|-..+..+..|+++|+|....+.+-+|..+.. .+...||++--.|-.-|
T Consensus 29 eg~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggeia~nL~~LY 84 (132)
T COG1516 29 EGALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEIAQNLDALY 84 (132)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchHHHHHHHHH
Confidence 4566778889999999999999999999887654 45556676655554444
No 366
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=24.66 E-value=1.6e+02 Score=31.91 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
+-+.+.|+=-..++-.|-.+..... -.+..-.+.+||+.|+.-.++..+|+..-..|++++|. .+..+++
T Consensus 415 aa~lmkRkW~~d~~~AlrDch~Alr-ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Pt-d~a~~~~ 484 (758)
T KOG1310|consen 415 AAALMKRKWRGDSYLALRDCHVALR-LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPT-DVARQNF 484 (758)
T ss_pred HHHHHhhhccccHHHHHHhHHhhcc-CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCch-hhhhhhh
Confidence 3333444444444444444333222 22334579999999999999999999999999955552 4444443
No 367
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=24.58 E-value=99 Score=25.74 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 222 HADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
++.||.+++.+.++-.||+||.+|.++.
T Consensus 12 H~~Ai~ma~~~~~~~~~p~vr~lA~~I~ 39 (151)
T PF03713_consen 12 HQQAIEMAELALKRGTDPEVRALAQQII 39 (151)
T ss_dssp HHHHHHHHHHHHCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5678888888875556888888888763
No 368
>PLN03086 PRLI-interacting factor K; Provisional
Probab=24.44 E-value=4.3e+02 Score=28.10 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023077 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYG 180 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALe 180 (287)
||.|.|+|.....-..+-|+|+ .+...|-|..++...+ ..|++.++.... ++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~ 67 (567)
T PLN03086 12 LEREQRERKQRAKLKLERERKA---------------------KEEAAKQREAIEAAQR--SRRLDAIEAQIK-ADQQMQ 67 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHH
No 369
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.33 E-value=4.6e+02 Score=24.35 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=6.4
Q ss_pred HHHHHHHHhcC
Q 023077 244 QAADLRYILQA 254 (287)
Q Consensus 244 QAKqLLyILEA 254 (287)
-.++|+.+|+.
T Consensus 139 i~k~l~~vL~k 149 (208)
T PRK14154 139 TLDLLHNTLAK 149 (208)
T ss_pred HHHHHHHHHHH
Confidence 34556666654
No 370
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=24.26 E-value=2e+02 Score=23.44 Aligned_cols=48 Identities=23% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq 217 (287)
-.|+..+-.++.+.+.|+|.+|-++|+.+-+... .+-++|.-|.+.-.
T Consensus 13 G~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l~----~AH~~qt~liq~ea 60 (97)
T cd00215 13 GNARSKALEALKAAKEGDFAEAEELLEEANDSLN----EAHHAQTKLLQQEA 60 (97)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 4578889999999999999999999998766322 23345555555443
No 371
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.23 E-value=5.3e+02 Score=23.25 Aligned_cols=52 Identities=21% Similarity=0.081 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 145 EKRMRVRRELEKVAKEQAERRAT-AQ----LMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~-ae----~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
+...++++.+.+.|+++++++-. ++ ..-+.+...+...=..-|++.-++++.
T Consensus 125 ~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~ 181 (205)
T PRK06231 125 YEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIK 181 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666555422 22 233334444455555555555555443
No 372
>PF10414 CysG_dimeriser: Sirohaem synthase dimerisation region; InterPro: IPR019478 Bacterial sulphur metabolism depends on the iron-containing porphinoid sirohaem. CysG is a multi-functional enzyme with S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase, dehydrogenase and ferrochelatase activities. CysG synthesizes sirohaem from uroporphyrinogen III via reactions which encompass two branchpoint intermediates in tetrapyrrole biosynthesis, diverting flux first from protoporphyrin IX biosynthesis and then from cobalamin (vitamin B12) biosynthesis. CysG is a dimer. Its dimerisation region is 74 residues long, and acts to hold the two structurally similar protomers held together asymmetrically through a number of salt-bridges across complementary residues within the dimerisation region []. CysG dimerisation produces a series of active sites, accounting for CysG's multi-functionality, catalysing four diverse reactions: Two SAM-dependent methylations NAD+-dependent tetrapyrrole dehydrogenation Metal chelation ; GO: 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1PJT_A 1PJS_A 1PJQ_A.
Probab=24.09 E-value=2.8e+02 Score=19.96 Aligned_cols=48 Identities=29% Similarity=0.225 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 145 EKRMRVRRELEKVAKEQAERRATAQLMF-ELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~y-eaG~aALerGdY~qAIelLE~Ale 196 (287)
..|.+|++.|....+ |+.--+..+ .....++..|+..+|-+.|+.+++
T Consensus 12 ~~R~~Vk~~l~~~~~----RR~FWe~~~~g~~~~~~~~g~~~~A~~~l~~~L~ 60 (60)
T PF10414_consen 12 RFRERVKQRLPDFAE----RRRFWERFFDGPFAELVLAGDEEEAEALLEQALD 60 (60)
T ss_dssp HHHHHHHHH-SSHHH----HHHHHHHHT-HHHHHHHHTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCchH----HHHHHHHHHcCHHHHHHHCCCHHHHHHHHHHhhC
Confidence 456777777765444 222222333 456788999999999999998763
No 373
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=24.00 E-value=5.1e+02 Score=22.94 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcC-C-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 209 QIWLAMAYEANN-R-HADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 209 QmwLAtAYqa~G-q-~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
++.+.-.+.+.| + .+-|+.+|.-|. -||+|. +||.|++.
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~-Vc~qP~------~LL~iyq~ 133 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALK-VYPQPQ------QLLSIYQQ 133 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHH-hCCCHH------HHHHHHHh
Confidence 445555666677 4 456788999998 899884 68888875
No 374
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.44 E-value=8.4e+02 Score=25.28 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
.|+....++.+ ...||+++..++...- ......++-+++.+. .||+..+-+| .+
T Consensus 189 ~~~~i~~~i~~--l~~aie~Y~~f~~~~~-------------------~~~~~~~Lp~L~~v~-~~gn~tvye~----~~ 242 (507)
T PF05600_consen 189 LFDEIVEAISD--LQEAIEYYQAFVEFVH-------------------DESESEVLPLLRFVQ-EHGNTTVYEW----RT 242 (507)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH-------------------cCccchhhHHHHHHH-hCCCCcHhHH----Hh
Confidence 44555555522 7777777777665322 334556788888888 8999998887 44
Q ss_pred HhcCCCCCCCc
Q 023077 251 ILQAPKLKISQ 261 (287)
Q Consensus 251 ILEAPkLkrp~ 261 (287)
+...+....|+
T Consensus 243 g~~P~~ve~~~ 253 (507)
T PF05600_consen 243 GEAPEKVEEPP 253 (507)
T ss_pred cCCcccccCCc
Confidence 54444555553
No 375
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=23.29 E-value=3.7e+02 Score=25.95 Aligned_cols=60 Identities=20% Similarity=0.106 Sum_probs=47.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCC
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHP 237 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HP 237 (287)
.=+..+.+|++...++.+|..+.. +++=...+++.++|..+.|..+-|-+++..|. +++|
T Consensus 105 ~~~~~~~~~~~~~Ll~~~E~sl~~----~pfWLDgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP 167 (301)
T TIGR03362 105 DYQELLAQADWAALLQRVEQSLSL----APFWLDGQRLSAQALERLGYAAVAQAIRDELAAFLERLP 167 (301)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh----CchhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCc
Confidence 334556889999999999998885 67777899999999999998777777776653 3555
No 376
>PTZ00429 beta-adaptin; Provisional
Probab=23.28 E-value=8.1e+02 Score=26.77 Aligned_cols=129 Identities=13% Similarity=0.139 Sum_probs=78.3
Q ss_pred HHHH-HHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077 119 EKKA-EELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTI 197 (287)
Q Consensus 119 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~ 197 (287)
-+|+ |.+|.+....+.++.-=..+..-+-.-+|.+|...-. ..+ ...++.-.+++-.|. ..-.+|=.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~--~~k----k~alKkvIa~mt~G~--DvS~LF~dVvk~ 76 (746)
T PTZ00429 5 LRKARERIQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDS--YRK----KAAVKRIIANMTMGR--DVSYLFVDVVKL 76 (746)
T ss_pred HHHHHHHHHHHhhcCCCccccccccccchHHHHHHHHHCCCH--HHH----HHHHHHHHHHHHCCC--CchHHHHHHHHH
Confidence 3455 7789888888765432222222223446777754322 222 345666777888884 667778777877
Q ss_pred CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCC
Q 023077 198 IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES--NHPSKNIRRQAADLRYILQAPK 256 (287)
Q Consensus 198 ~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~--~HPd~qVRqQAKqLLyILEAPk 256 (287)
++.+. .-.+=..+|...-.+..+.+.|+-.|..|.+ +||||-||--|=+.|.-+--|.
T Consensus 77 ~~S~d-~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~ 136 (746)
T PTZ00429 77 APSTD-LELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS 136 (746)
T ss_pred hCCCC-HHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH
Confidence 76553 3344444444444567777777666655542 4789999999888776554443
No 377
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=23.15 E-value=1.7e+02 Score=23.56 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTII 198 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~ 198 (287)
..+|...+..|..++..||..+|--+|-.++..+
T Consensus 35 ~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 35 LRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4568889999999999999999998888877655
No 378
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.05 E-value=6.1e+02 Score=26.15 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 154 LEKVAKEQAERRATAQLMFELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aAL--erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
|.+.-.+.+.+...++..|+.-..-+ .+..|+.|+..||.-+.. .+..+---.-+...|++.+|-.+..+
T Consensus 131 l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~--------~e~~f~~f~~l~~~Gd~~~A~e~l~~ 202 (569)
T PRK04778 131 LLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLEN--------LEEEFSQFVELTESGDYVEAREILDQ 202 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHH--------HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 44445556666777888888776655 577899999999998873 34566666777888999999888888
Q ss_pred HH
Q 023077 232 LE 233 (287)
Q Consensus 232 L~ 233 (287)
|.
T Consensus 203 l~ 204 (569)
T PRK04778 203 LE 204 (569)
T ss_pred HH
Confidence 87
No 379
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=22.98 E-value=7.9e+02 Score=26.51 Aligned_cols=82 Identities=23% Similarity=0.205 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH
Q 023077 147 RMRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI 226 (287)
Q Consensus 147 ~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI 226 (287)
.++-+-=|.+.+++.+++..+.+..+-....-...|+...|.++=.-.....| ..-....||++.-|.+.|+.+.+.
T Consensus 349 ~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~~~g~~~~a~~Laq~~F~r~p---~~~sy~~lw~~~~~~gi~~~e~~~ 425 (587)
T COG4715 349 PSKAELWLARGIRTAREQLQTTQLPQTLAELKEEEGRLGFAAELAQEAFFRTP---NGRSYLGLWLAAVYAGIGREEREA 425 (587)
T ss_pred hhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHhhcchHHHHHHHHHHccCCC---CccchhhHHHHHHHhhhchHHHHH
Confidence 34555556666666555566666666677778889999998876544444333 333479999999999999999888
Q ss_pred HHHHH
Q 023077 227 ALYKQ 231 (287)
Q Consensus 227 ALCQ~ 231 (287)
++-+.
T Consensus 426 a~~~~ 430 (587)
T COG4715 426 ALAYL 430 (587)
T ss_pred HHHHH
Confidence 77665
No 380
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.56 E-value=6.3e+02 Score=28.06 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC-CcccccccCCCCcccc
Q 023077 222 HADCIALYKQLESNHPSKNIRRQAADLRYILQAPKLKI-SQEEMVTIPLIGSSYD 275 (287)
Q Consensus 222 ~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEAPkLkr-p~eW~v~IPdL~~~~d 275 (287)
.++=++|.|-..+-+.|+..-.-|+.+||.+ |.+ +++..+.+|-...+-+
T Consensus 691 ~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~----l~~~~p~el~~~~g~~~~~e 741 (775)
T KOG0319|consen 691 EDQPEALLQFVVKWNTNSKTCHVAQRVLYEI----LKRVDPEELVRWPGSGEVVE 741 (775)
T ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHHHHHH----HhccChHHhhcccchHHHHH
Confidence 4566778888887788889999999998887 555 6777888887655444
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.46 E-value=3.7e+02 Score=29.19 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=49.4
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 174 LGQKAYGKGMYGR-AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 174 aG~aALerGdY~q-AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
.+..||.+-.... ++..|..++... + .+++..-|.|+...|.. +|+...-.+. +.|++.||+.|-+.|..+
T Consensus 794 aA~~aLg~~g~~~~~~~~l~~aL~d~---d---~~VR~~Aa~aL~~l~~~-~a~~~L~~~L-~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 794 AALAALAELGCPPDDVAAATAALRAS---A---WQVRQGAARALAGAAAD-VAVPALVEAL-TDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHhcCCcchhHHHHHHHhcCC---C---hHHHHHHHHHHHhcccc-chHHHHHHHh-cCCCHHHHHHHHHHHhcc
Confidence 4555555444333 346677766522 2 36888889998888864 5666666666 699999999999998776
No 382
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=22.43 E-value=1.3e+02 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEG 193 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~ 193 (287)
-+..++.+...+++|+|..|+++|+.
T Consensus 70 ~~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 70 EELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34577888999999999999999983
No 383
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=22.42 E-value=1.2e+02 Score=21.20 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHhC-CCHHHHHHHHHHHHHhc
Q 023077 230 KQLESNH-PSKNIRRQAADLRYILQ 253 (287)
Q Consensus 230 Q~L~~~H-Pd~qVRqQAKqLLyILE 253 (287)
..|. +| ++++|++.|+.++.-+.
T Consensus 26 ~~l~-k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 26 NKLR-KHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HHHH-HCTS-HHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCCHHHHHHHHHHHHHHh
Confidence 3566 67 99999999999987553
No 384
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=22.25 E-value=1.9e+02 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.+....+..+...+.+|+|.+|-..|..+..
T Consensus 115 ~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 115 AQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6788899999999999999999999999875
No 385
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.10 E-value=1.4e+03 Score=27.24 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCchHHHHH---------------------HHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 181 KGMYGRAIEFLEGALTIIPRPTFFGGEIQI---------------------WLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 181 rGdY~qAIelLE~Ale~~~~~S~lGGEAQm---------------------wLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
...|.++|+.|+.|-..+....----+++- -|..+-....+..++...+..+.-+-+-+
T Consensus 413 l~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~ 492 (1486)
T PRK04863 413 AIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRS 492 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHH
Confidence 367899999999988887633222122222 23333344444555555544444455555
Q ss_pred HHHHHHHHHHHHh
Q 023077 240 NIRRQAADLRYIL 252 (287)
Q Consensus 240 qVRqQAKqLLyIL 252 (287)
....||+.+|--+
T Consensus 493 ~a~~~~~~~~~~~ 505 (1486)
T PRK04863 493 EAWDVARELLRRL 505 (1486)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665443
No 386
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=22.04 E-value=1.4e+02 Score=28.20 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~ 199 (287)
.+|+..|+.+..++++|+|..|.-+|-.+|....
T Consensus 112 ~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~ 145 (241)
T smart00770 112 DTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLG 145 (241)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4577789999999999999999999999997654
No 387
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=21.88 E-value=5.8e+02 Score=22.81 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCC-----CchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPT-----FFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S-----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
+=..+..|+.-|+-|-|..|.+-+-+|++... ..- -+-+=..-+|+-|+-+.|+.++|+.-...
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR 80 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 44567788999999999999999999886433 221 12335678999999999999999865443
No 388
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.77 E-value=17 Score=27.19 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=11.0
Q ss_pred ccccccceeeeeccC
Q 023077 2 AVVVGNLALLLDVAS 16 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (287)
+|++|||++|-+-.-
T Consensus 14 gvIigNia~LK~sAk 28 (55)
T PF11446_consen 14 GVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHhHHHHHHHhcc
Confidence 678899988866443
No 389
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.70 E-value=6.7e+02 Score=27.51 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCC-C------c---hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 176 QKAYGKGMYGRAIEFLEGALTIIPRPT-F------F---GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 176 ~aALerGdY~qAIelLE~Ale~~~~~S-~------l---GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
+..+-+|+.+.|+.+|+.++......- . + .......|..+.. .|+..+++.++..|.+.-.+ ...|-
T Consensus 211 IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~-~~d~~~~l~l~~~l~~~G~d--~~~~L 287 (700)
T PRK12323 211 LAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLGAIDQSYLVRLLDALA-AEDGAALLAIADEMAGRSLS--FAGAL 287 (700)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC--HHHHH
Confidence 456789999999999999876433211 0 0 1123344444444 79999999999999844434 44455
Q ss_pred HHHHHHh
Q 023077 246 ADLRYIL 252 (287)
Q Consensus 246 KqLLyIL 252 (287)
..++..|
T Consensus 288 ~dLl~~l 294 (700)
T PRK12323 288 QDLASLL 294 (700)
T ss_pred HHHHHHH
Confidence 5554433
No 390
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=21.55 E-value=1.7e+02 Score=23.64 Aligned_cols=31 Identities=26% Similarity=0.183 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
-.|+..+-.++.+.+.|+|..|-++|+.+-+
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477888899999999999999999988755
No 391
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=21.04 E-value=97 Score=32.63 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.-+||+.+|...|+.++|..+++.|. .|-+
T Consensus 539 ~t~Wl~~~~~~~g~~~~a~~ll~~l~-~~a~ 568 (612)
T COG3387 539 TTLWLSEYYLALGRLDEAKKLLEWLL-AFAS 568 (612)
T ss_pred ehhHHHHHHHHccchHHHHHHHHHHH-HhcC
Confidence 34999999999999999999999998 5543
No 392
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=20.91 E-value=22 Score=39.64 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=16.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Q 023077 98 EYDWEKEMRRRVKEIEEMRELEKK 121 (287)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~ 121 (287)
+++||.+....+.+.+++.|=|..
T Consensus 67 f~~~e~dvDdeveddd~~~edEed 90 (1024)
T KOG1999|consen 67 FIDREADVDDEVEDDDDDEEDEED 90 (1024)
T ss_pred ccccccccccccccccchhccCcc
Confidence 478888777777777766654443
No 393
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=20.88 E-value=1.7e+02 Score=27.35 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+-.+|.+|+.+..........-.+-++-.-.-+---|..++...--+.|. .|||++||.|
T Consensus 193 l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~-~h~d~ev~~~ 252 (254)
T PF04826_consen 193 LLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALA-NHPDPEVKEQ 252 (254)
T ss_pred HHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHH-cCCCHHHhhh
Confidence 77788899887654443322111111111111223345555555566788 8999999987
No 394
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.66 E-value=2.9e+02 Score=22.77 Aligned_cols=22 Identities=18% Similarity=0.074 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH
Q 023077 225 CIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 225 AIALCQ~L~~~HPd~qVRqQAK 246 (287)
|+.|-..+.++|+.+-..+-|.
T Consensus 57 AL~lLd~~vkNcg~~f~~~i~s 78 (133)
T cd03561 57 ALTLLELLVKNCGKPFHLQVAD 78 (133)
T ss_pred HHHHHHHHHHhCChHHHHHHhh
Confidence 3444444444443433333333
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.64 E-value=2.5e+02 Score=25.98 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcC
Q 023077 180 GKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~G 220 (287)
.+++|++||++|.......- .....|+..-++|+.+|...+
T Consensus 2 ~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~ 44 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE 44 (260)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 45666677766665442221 223345566666667776654
No 396
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.58 E-value=3.5e+02 Score=24.61 Aligned_cols=56 Identities=14% Similarity=0.101 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+-.|.-+|.+|+|.+|+++|-. |...+ .---+.+.+....|+..-|++.++.-.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~---~~~~~Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSH-----PSLIP---WFPDKILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCC-----CCCCc---ccHHHHHHHHHHCCChhHHHHHHHhcC
Confidence 456678899999999999998832 21111 112245555555788888888777654
No 397
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=20.50 E-value=8e+02 Score=24.18 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 99 YDWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKVAKEQAERRATAQLMFELG 175 (287)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG 175 (287)
..||.++-+++++++.+-+.-+++.+.-.++.+--.+ -.....+..-++.++++-|.+.-+--++....|+.+
T Consensus 130 ~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~ae----i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~ 202 (294)
T COG1340 130 PEEERELVQKIKELRKELEDAKKALEENEKLKELKAE----IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEA 202 (294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888777777777666655444433321 222344555666666666665444444444455444
No 398
>PRK05629 hypothetical protein; Validated
Probab=20.48 E-value=1.6e+02 Score=27.34 Aligned_cols=64 Identities=17% Similarity=0.055 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH-----HHHHHHHcCC-hHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW-----LAMAYEANNR-HADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmw-----LAtAYqa~Gq-~EkAIALCQ~L~~~HP 237 (287)
+...-.=..|+-.|++..|+..|..++..-. .+...-+.+. +...+...|. .++ .+.+.+- -||
T Consensus 194 ~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~--~pi~il~~l~~~~r~l~~l~~~~~~~~~~--~ia~~l~-i~p 263 (318)
T PRK05629 194 EVSGFDIADLACAGQVSKAVASTRRALQLGV--SPVALAAALSMKVGQIARLYSTRGRIDSF--ELAKELG-MPP 263 (318)
T ss_pred cchHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHHHHhhcCCCCHH--HHHHHcC-CCh
Confidence 3455556788999999999999999877433 3322211111 4466676674 233 5666665 566
No 399
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.46 E-value=8.7e+02 Score=25.14 Aligned_cols=79 Identities=19% Similarity=0.108 Sum_probs=57.9
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC
Q 023077 147 RMRVRREL---EKVAKEQAERRATAQLMFELGQKAY--GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR 221 (287)
Q Consensus 147 ~~rv~~~L---~~~a~~~a~~~e~ae~~yeaG~aAL--erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq 221 (287)
-..|++.| .+.-.+.+.+.......|+.-...+ .+..|+.|+..||.-+.. .+-.+--..-+..+|+
T Consensus 117 i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~--------ie~~F~~f~~lt~~GD 188 (560)
T PF06160_consen 117 IKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLEN--------IEEEFSEFEELTENGD 188 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH--------HHHHHHHHHHHHHCCC
Confidence 33444444 3444555666677777888776665 478899999999998872 3566667778889999
Q ss_pred hHHHHHHHHHHH
Q 023077 222 HADCIALYKQLE 233 (287)
Q Consensus 222 ~EkAIALCQ~L~ 233 (287)
+.+|-.+...|.
T Consensus 189 ~~~A~eil~~l~ 200 (560)
T PF06160_consen 189 YLEAREILEKLK 200 (560)
T ss_pred HHHHHHHHHHHH
Confidence 999999988887
No 400
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.38 E-value=7.3e+02 Score=26.97 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=4.7
Q ss_pred ccccccCCCC
Q 023077 262 EEMVTIPLIG 271 (287)
Q Consensus 262 eW~v~IPdL~ 271 (287)
.-.|.|+.++
T Consensus 628 Gd~V~v~~~~ 637 (771)
T TIGR01069 628 GDKVRIRYFG 637 (771)
T ss_pred CCEEEEccCC
Confidence 3444555553
No 401
>PF15384 DUF4610: Domain of unknown function (DUF4610)
Probab=20.24 E-value=86 Score=29.19 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=30.6
Q ss_pred cCCccccceecCCCCCccchhhhhhc-cccCccCccccceEEeecccccccccccCCC
Q 023077 26 SRPLALDVLLNLPKRDLHLNYSALAN-KSLDSEGESWNHRVVTRGKVNSKVNAVDFDA 82 (287)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
-++.+.. -+|.+++...-...+. |-+ .|+|.+.--+-|.|. .-||||||
T Consensus 148 ~~~~g~~---flpd~d~qr~g~g~~vrrr~--PGeSLINPg~K~kKp---A~GV~FDD 197 (197)
T PF15384_consen 148 PQPAGPQ---FLPDPDPQRGGPGPGVRRRC--PGESLINPGFKSKKP---ASGVDFDD 197 (197)
T ss_pred CCcCCcc---cCCCcccccCCCCcceeccC--CCccccCCcccccCC---CCCCCCCC
Confidence 4455555 5677666555444444 334 488877777766665 45999986
No 402
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=20.05 E-value=6.1e+02 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTI 197 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~ 197 (287)
..+-+...+++|+-..|-+.|+.+...
T Consensus 405 ~adna~~lLergr~e~a~~Nl~~I~~L 431 (603)
T COG4191 405 YADNARLLLERGRTEEARENLERISAL 431 (603)
T ss_pred HHHHHHHHHHcCChHHHHhHHHHHHHH
Confidence 334455666777777776666665543
No 403
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=20.04 E-value=2.1e+02 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|...+..|...=..|+|.+|+.++..+++
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555666777777666666554
Done!