Query 023077
Match_columns 287
No_of_seqs 103 out of 109
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:58:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023077.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023077hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 98.8 3.9E-08 1.3E-12 79.3 12.1 82 168-253 70-151 (151)
2 2xev_A YBGF; tetratricopeptide 98.8 1.4E-07 4.9E-12 68.3 11.9 85 169-254 40-124 (129)
3 2l6j_A TPR repeat-containing p 98.6 1.1E-06 3.8E-11 61.7 11.9 69 167-239 3-71 (111)
4 2yhc_A BAMD, UPF0169 lipoprote 98.5 7.2E-07 2.5E-11 72.8 10.5 73 168-241 4-76 (225)
5 2xev_A YBGF; tetratricopeptide 98.5 1.7E-06 5.7E-11 62.6 10.8 69 170-239 4-72 (129)
6 3ma5_A Tetratricopeptide repea 98.5 7.4E-07 2.5E-11 65.0 8.6 81 168-252 7-90 (100)
7 2vgx_A Chaperone SYCD; alterna 98.4 2.2E-06 7.7E-11 67.0 11.1 83 168-254 55-141 (148)
8 3upv_A Heat shock protein STI1 98.4 1.5E-06 5.2E-11 63.7 9.4 67 168-238 4-70 (126)
9 4gco_A Protein STI-1; structur 98.4 1.3E-06 4.5E-11 66.7 9.4 67 168-238 13-79 (126)
10 3qky_A Outer membrane assembly 98.4 2.4E-06 8.2E-11 70.1 11.2 72 167-239 14-85 (261)
11 2xcb_A PCRH, regulatory protei 98.4 2E-06 6.9E-11 65.4 10.0 82 168-253 52-137 (142)
12 1elr_A TPR2A-domain of HOP; HO 98.4 3.4E-06 1.2E-10 59.5 10.5 86 168-253 38-126 (131)
13 2v5f_A Prolyl 4-hydroxylase su 98.4 4.4E-06 1.5E-10 62.5 11.0 79 168-246 5-86 (104)
14 3qky_A Outer membrane assembly 98.4 3.6E-06 1.2E-10 69.1 11.4 84 168-252 148-241 (261)
15 3k9i_A BH0479 protein; putativ 98.3 6.2E-06 2.1E-10 60.7 10.6 80 167-250 26-106 (117)
16 4gcn_A Protein STI-1; structur 98.3 5.1E-06 1.7E-10 63.2 10.4 79 168-246 42-123 (127)
17 2kc7_A BFR218_protein; tetratr 98.3 5.3E-06 1.8E-10 58.4 8.9 66 171-240 3-69 (99)
18 1na3_A Designed protein CTPR2; 98.3 8.2E-06 2.8E-10 55.5 9.4 68 168-239 9-76 (91)
19 3sz7_A HSC70 cochaperone (SGT) 98.3 5.4E-06 1.9E-10 63.8 9.4 69 168-240 45-113 (164)
20 1elw_A TPR1-domain of HOP; HOP 98.3 5.2E-06 1.8E-10 57.5 8.4 66 169-238 5-70 (118)
21 2xcb_A PCRH, regulatory protei 98.2 6.7E-06 2.3E-10 62.5 9.4 68 168-239 18-85 (142)
22 4gcn_A Protein STI-1; structur 98.2 2.8E-06 9.5E-11 64.6 7.3 67 167-237 7-73 (127)
23 3rkv_A Putative peptidylprolyl 98.2 5.8E-06 2E-10 63.5 8.9 80 169-252 64-145 (162)
24 3vtx_A MAMA; tetratricopeptide 98.2 4.6E-06 1.6E-10 64.3 8.1 71 166-240 3-73 (184)
25 3gyz_A Chaperone protein IPGC; 98.2 7E-06 2.4E-10 66.1 9.3 68 167-238 35-102 (151)
26 1hxi_A PEX5, peroxisome target 98.2 6.9E-06 2.4E-10 62.1 8.6 64 171-238 20-83 (121)
27 2kat_A Uncharacterized protein 98.2 5.9E-06 2E-10 60.0 7.8 81 168-252 19-102 (115)
28 4ga2_A E3 SUMO-protein ligase 98.2 9.9E-06 3.4E-10 63.0 9.5 80 167-250 30-110 (150)
29 2vgx_A Chaperone SYCD; alterna 98.2 9.4E-06 3.2E-10 63.4 9.4 69 167-239 20-88 (148)
30 3q49_B STIP1 homology and U bo 98.2 1.1E-05 3.9E-10 58.8 9.1 65 169-237 44-108 (137)
31 1a17_A Serine/threonine protei 98.1 3.5E-05 1.2E-09 57.1 11.4 69 168-240 47-115 (166)
32 2dba_A Smooth muscle cell asso 98.1 3.7E-05 1.3E-09 55.9 11.3 67 168-238 65-131 (148)
33 3upv_A Heat shock protein STI1 98.1 2E-05 6.8E-10 57.7 9.7 65 168-236 38-102 (126)
34 3urz_A Uncharacterized protein 98.1 4.9E-06 1.7E-10 67.5 6.9 69 167-239 3-87 (208)
35 1elr_A TPR2A-domain of HOP; HO 98.1 1.9E-05 6.6E-10 55.6 9.2 68 167-238 3-70 (131)
36 4gco_A Protein STI-1; structur 98.1 2.4E-05 8.3E-10 59.7 10.4 68 168-239 47-114 (126)
37 2kck_A TPR repeat; tetratricop 98.1 1.7E-05 5.9E-10 54.6 8.6 68 170-239 42-110 (112)
38 2vyi_A SGTA protein; chaperone 98.1 4.9E-05 1.7E-09 53.3 10.7 66 169-238 47-112 (131)
39 2dba_A Smooth muscle cell asso 98.1 7.6E-05 2.6E-09 54.2 12.0 71 168-239 28-98 (148)
40 4abn_A Tetratricopeptide repea 98.1 6.3E-05 2.1E-09 69.4 14.4 71 168-242 102-173 (474)
41 2kck_A TPR repeat; tetratricop 98.1 2.7E-05 9.2E-10 53.6 8.9 64 171-238 9-72 (112)
42 2lni_A Stress-induced-phosphop 98.1 2.7E-05 9.1E-10 55.4 9.1 67 168-238 50-116 (133)
43 2fbn_A 70 kDa peptidylprolyl i 98.1 4E-05 1.4E-09 60.7 10.7 80 169-252 89-169 (198)
44 1hxi_A PEX5, peroxisome target 98.0 8.4E-06 2.9E-10 61.7 6.5 67 168-238 51-117 (121)
45 3rkv_A Putative peptidylprolyl 98.0 4E-05 1.4E-09 58.8 10.1 47 168-217 97-143 (162)
46 2vyi_A SGTA protein; chaperone 98.0 0.00011 3.8E-09 51.5 11.3 70 166-239 10-79 (131)
47 1na0_A Designed protein CTPR3; 98.0 5.1E-05 1.8E-09 52.8 9.2 66 169-238 44-109 (125)
48 1elw_A TPR1-domain of HOP; HOP 98.0 3.8E-05 1.3E-09 53.1 8.5 68 168-239 38-105 (118)
49 3vtx_A MAMA; tetratricopeptide 98.0 1.9E-05 6.6E-10 60.8 7.6 67 168-238 107-173 (184)
50 3sz7_A HSC70 cochaperone (SGT) 98.0 2.9E-05 9.9E-10 59.7 8.3 69 166-238 9-77 (164)
51 4i17_A Hypothetical protein; T 98.0 3.5E-05 1.2E-09 61.5 9.0 65 170-238 44-108 (228)
52 2fbn_A 70 kDa peptidylprolyl i 98.0 8.6E-05 2.9E-09 58.7 11.0 62 168-233 122-184 (198)
53 3q49_B STIP1 homology and U bo 97.9 4.6E-05 1.6E-09 55.5 8.6 68 168-239 9-76 (137)
54 3urz_A Uncharacterized protein 97.9 3.7E-05 1.3E-09 62.3 8.8 66 171-240 57-122 (208)
55 2yhc_A BAMD, UPF0169 lipoprote 97.9 4.6E-05 1.6E-09 62.1 9.2 77 169-246 42-136 (225)
56 1na0_A Designed protein CTPR3; 97.9 0.00018 6.1E-09 50.0 10.7 68 168-239 9-76 (125)
57 2pl2_A Hypothetical conserved 97.9 4E-05 1.4E-09 62.5 8.2 67 169-239 6-72 (217)
58 2lni_A Stress-induced-phosphop 97.9 0.00011 3.6E-09 52.3 9.4 67 168-238 16-82 (133)
59 1a17_A Serine/threonine protei 97.9 7.8E-05 2.7E-09 55.2 9.0 69 166-238 11-79 (166)
60 2gw1_A Mitochondrial precursor 97.9 7.4E-05 2.5E-09 65.0 10.0 70 165-239 3-72 (514)
61 3qou_A Protein YBBN; thioredox 97.9 4.4E-05 1.5E-09 65.4 8.3 70 169-242 118-187 (287)
62 1hh8_A P67PHOX, NCF-2, neutrop 97.8 0.00031 1.1E-08 54.8 11.8 75 168-242 71-157 (213)
63 2r5s_A Uncharacterized protein 97.8 2.3E-05 7.7E-10 61.4 5.0 68 170-241 8-75 (176)
64 3ieg_A DNAJ homolog subfamily 97.8 0.00037 1.3E-08 57.0 12.3 65 173-237 239-303 (359)
65 3ieg_A DNAJ homolog subfamily 97.8 0.00011 3.7E-09 60.2 8.8 66 168-237 37-102 (359)
66 3fp2_A TPR repeat-containing p 97.8 5.7E-05 1.9E-09 66.5 7.6 70 165-238 22-91 (537)
67 2fo7_A Synthetic consensus TPR 97.7 0.00031 1.1E-08 48.8 9.4 65 170-238 71-135 (136)
68 4i17_A Hypothetical protein; T 97.7 0.00012 4.3E-09 58.3 8.3 69 168-239 7-75 (228)
69 3ro2_A PINS homolog, G-protein 97.7 0.00038 1.3E-08 55.7 11.0 66 168-233 5-70 (338)
70 2vq2_A PILW, putative fimbrial 97.7 0.00042 1.4E-08 53.2 10.7 61 169-233 43-104 (225)
71 1xnf_A Lipoprotein NLPI; TPR, 97.7 0.00023 8E-09 56.7 9.5 69 168-240 77-145 (275)
72 3u4t_A TPR repeat-containing p 97.7 0.00014 4.7E-09 58.4 8.2 69 170-239 39-107 (272)
73 3uq3_A Heat shock protein STI1 97.7 0.00018 6.2E-09 56.4 8.7 68 166-238 3-70 (258)
74 2c2l_A CHIP, carboxy terminus 97.7 0.00012 4.1E-09 62.6 8.2 68 168-239 38-105 (281)
75 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00022 7.7E-09 55.6 9.0 67 168-238 37-103 (213)
76 2fo7_A Synthetic consensus TPR 97.7 0.0002 6.7E-09 49.9 7.7 67 168-238 35-101 (136)
77 2pl2_A Hypothetical conserved 97.7 0.00025 8.6E-09 57.7 9.4 68 168-240 118-185 (217)
78 1ihg_A Cyclophilin 40; ppiase 97.6 0.00035 1.2E-08 63.3 11.2 83 166-252 271-354 (370)
79 3u4t_A TPR repeat-containing p 97.6 0.00034 1.2E-08 56.1 9.8 66 170-239 76-141 (272)
80 1p5q_A FKBP52, FK506-binding p 97.6 0.00028 9.7E-09 62.2 10.0 68 168-239 196-263 (336)
81 1p5q_A FKBP52, FK506-binding p 97.6 0.00063 2.1E-08 60.0 12.2 63 168-234 230-293 (336)
82 3uq3_A Heat shock protein STI1 97.6 0.00075 2.6E-08 52.9 11.3 68 167-238 138-205 (258)
83 1xnf_A Lipoprotein NLPI; TPR, 97.6 0.00038 1.3E-08 55.5 9.8 67 168-238 43-109 (275)
84 3as5_A MAMA; tetratricopeptide 97.6 0.00037 1.3E-08 51.5 8.9 59 171-233 113-171 (186)
85 3sf4_A G-protein-signaling mod 97.6 0.00069 2.3E-08 56.8 11.5 66 168-233 9-74 (406)
86 4eqf_A PEX5-related protein; a 97.6 0.00031 1E-08 59.4 9.4 68 168-239 99-166 (365)
87 2e2e_A Formate-dependent nitri 97.6 0.00035 1.2E-08 53.7 8.9 69 168-240 78-149 (177)
88 4a1s_A PINS, partner of inscut 97.6 0.00027 9.2E-09 60.4 8.8 69 165-233 45-113 (411)
89 3ro3_A PINS homolog, G-protein 97.6 0.0029 9.7E-08 45.3 12.9 67 167-233 48-116 (164)
90 2hr2_A Hypothetical protein; a 97.5 0.00027 9.4E-09 59.8 8.4 71 165-235 8-86 (159)
91 2vq2_A PILW, putative fimbrial 97.5 0.00063 2.1E-08 52.2 9.7 65 169-237 114-178 (225)
92 3as5_A MAMA; tetratricopeptide 97.5 0.0005 1.7E-08 50.8 8.8 68 168-239 76-143 (186)
93 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00037 1.3E-08 64.3 9.7 68 168-239 317-384 (457)
94 1fch_A Peroxisomal targeting s 97.5 0.00034 1.1E-08 58.5 8.4 68 168-239 98-165 (368)
95 2e2e_A Formate-dependent nitri 97.5 0.00042 1.4E-08 53.3 8.3 68 168-239 44-114 (177)
96 2q7f_A YRRB protein; TPR, prot 97.5 0.00029 1E-08 55.1 7.5 66 169-238 126-191 (243)
97 3bee_A Putative YFRE protein; 97.5 0.00047 1.6E-08 51.9 8.2 66 169-238 7-75 (93)
98 3hym_B Cell division cycle pro 97.5 0.00052 1.8E-08 55.8 8.9 55 175-233 63-118 (330)
99 2ho1_A Type 4 fimbrial biogene 97.5 0.00034 1.2E-08 55.6 7.7 63 168-234 71-133 (252)
100 2y4t_A DNAJ homolog subfamily 97.4 0.00094 3.2E-08 57.6 10.7 69 168-240 60-128 (450)
101 1ihg_A Cyclophilin 40; ppiase 97.4 0.00028 9.6E-09 63.9 7.8 75 164-238 219-305 (370)
102 2ho1_A Type 4 fimbrial biogene 97.4 0.0019 6.6E-08 51.3 11.7 67 168-238 141-207 (252)
103 3cv0_A Peroxisome targeting si 97.4 0.00054 1.8E-08 55.6 8.5 67 168-238 55-121 (327)
104 2y4t_A DNAJ homolog subfamily 97.4 0.00062 2.1E-08 58.7 9.4 64 171-238 298-361 (450)
105 4eqf_A PEX5-related protein; a 97.4 0.0012 4.2E-08 55.7 10.9 67 168-238 213-279 (365)
106 2q7f_A YRRB protein; TPR, prot 97.4 0.00082 2.8E-08 52.5 9.0 67 168-238 91-157 (243)
107 3ro3_A PINS homolog, G-protein 97.4 0.0012 4.2E-08 47.3 9.3 67 167-233 88-156 (164)
108 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00032 1.1E-08 62.0 7.1 74 165-238 176-262 (338)
109 3cv0_A Peroxisome targeting si 97.4 0.0015 5.2E-08 53.0 10.5 66 169-238 207-272 (327)
110 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0012 4E-08 61.0 11.0 65 168-236 351-416 (457)
111 3gw4_A Uncharacterized protein 97.3 0.0021 7E-08 49.2 10.4 89 166-254 105-198 (203)
112 1fch_A Peroxisomal targeting s 97.3 0.00095 3.2E-08 55.7 9.0 68 168-239 64-131 (368)
113 3hym_B Cell division cycle pro 97.3 0.0012 4.2E-08 53.6 9.4 72 169-244 237-309 (330)
114 4ga2_A E3 SUMO-protein ligase 97.3 0.0012 4.3E-08 51.1 8.9 72 168-243 65-138 (150)
115 3k9i_A BH0479 protein; putativ 97.3 0.0002 6.8E-09 52.5 4.2 59 180-239 2-60 (117)
116 4gyw_A UDP-N-acetylglucosamine 97.3 0.00067 2.3E-08 68.0 9.1 68 168-239 43-110 (723)
117 2r5s_A Uncharacterized protein 97.3 0.0012 4.1E-08 51.5 8.6 64 168-233 108-171 (176)
118 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00052 1.8E-08 60.7 7.0 66 169-238 231-296 (338)
119 3qou_A Protein YBBN; thioredox 97.3 0.00099 3.4E-08 57.0 8.6 74 175-252 192-268 (287)
120 1w3b_A UDP-N-acetylglucosamine 97.2 0.00072 2.5E-08 57.8 7.6 67 168-238 67-133 (388)
121 2c2l_A CHIP, carboxy terminus 97.2 0.00055 1.9E-08 58.6 6.6 68 168-239 4-71 (281)
122 3edt_B KLC 2, kinesin light ch 97.2 0.0051 1.8E-07 48.4 11.6 70 166-235 125-198 (283)
123 3gw4_A Uncharacterized protein 97.2 0.0095 3.2E-07 45.5 12.7 68 166-233 64-134 (203)
124 4f3v_A ESX-1 secretion system 97.2 0.0031 1.1E-07 57.4 11.6 69 168-238 171-240 (282)
125 4b4t_Q 26S proteasome regulato 97.2 0.0012 4E-08 57.0 8.3 66 170-235 6-84 (434)
126 1qqe_A Vesicular transport pro 97.2 0.0016 5.5E-08 55.3 8.9 74 168-241 158-234 (292)
127 2vsy_A XCC0866; transferase, g 97.1 0.0013 4.3E-08 60.9 8.7 68 168-239 57-124 (568)
128 1wao_1 Serine/threonine protei 97.1 0.0012 4.1E-08 61.7 8.6 68 168-239 40-107 (477)
129 3edt_B KLC 2, kinesin light ch 97.1 0.0081 2.8E-07 47.3 11.9 70 166-235 83-156 (283)
130 1zu2_A Mitochondrial import re 97.1 0.0013 4.6E-08 55.6 7.5 77 168-248 36-133 (158)
131 2gw1_A Mitochondrial precursor 97.1 0.0027 9.1E-08 55.2 9.4 75 170-248 414-491 (514)
132 2vsy_A XCC0866; transferase, g 97.1 0.002 6.7E-08 59.6 9.1 68 168-239 91-161 (568)
133 2ifu_A Gamma-SNAP; membrane fu 97.1 0.0028 9.5E-08 54.2 9.4 71 168-239 155-227 (307)
134 3fp2_A TPR repeat-containing p 97.0 0.0032 1.1E-07 55.4 9.7 67 168-238 310-376 (537)
135 4gyw_A UDP-N-acetylglucosamine 97.0 0.0018 6E-08 65.0 9.1 68 168-239 77-144 (723)
136 1w3b_A UDP-N-acetylglucosamine 97.0 0.0024 8.2E-08 54.6 8.7 65 170-238 239-303 (388)
137 1qqe_A Vesicular transport pro 97.0 0.0025 8.7E-08 54.1 8.7 72 168-239 117-191 (292)
138 3nf1_A KLC 1, kinesin light ch 97.0 0.0036 1.2E-07 50.4 9.1 69 167-235 26-98 (311)
139 3ro2_A PINS homolog, G-protein 97.0 0.0045 1.6E-07 49.5 9.3 68 167-234 222-291 (338)
140 3mkr_A Coatomer subunit epsilo 97.0 0.0047 1.6E-07 53.3 10.1 62 170-240 103-164 (291)
141 1wao_1 Serine/threonine protei 97.0 0.00039 1.4E-08 64.9 3.6 69 167-239 5-73 (477)
142 4a1s_A PINS, partner of inscut 97.0 0.0048 1.7E-07 52.6 9.9 64 170-233 265-330 (411)
143 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0084 2.9E-07 50.4 11.1 85 169-253 197-287 (293)
144 1pc2_A Mitochondria fission pr 96.9 0.0052 1.8E-07 51.9 9.7 80 167-248 31-113 (152)
145 3nf1_A KLC 1, kinesin light ch 96.9 0.009 3.1E-07 48.0 10.5 69 167-235 68-140 (311)
146 1ouv_A Conserved hypothetical 96.9 0.014 4.7E-07 47.7 11.6 70 168-244 38-115 (273)
147 2pzi_A Probable serine/threoni 96.9 0.0017 5.8E-08 63.1 7.1 64 170-238 469-532 (681)
148 3sf4_A G-protein-signaling mod 96.9 0.012 4.2E-07 49.2 11.4 66 168-233 267-334 (406)
149 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0048 1.6E-07 52.0 8.9 66 168-233 155-223 (293)
150 2xpi_A Anaphase-promoting comp 96.9 0.0042 1.4E-07 55.8 9.1 68 168-239 516-583 (597)
151 2l6j_A TPR repeat-containing p 96.8 0.00024 8.2E-09 49.6 0.6 66 168-233 38-105 (111)
152 3q15_A PSP28, response regulat 96.8 0.0076 2.6E-07 52.3 10.1 70 166-235 220-290 (378)
153 3u3w_A Transcriptional activat 96.8 0.006 2.1E-07 51.3 9.2 68 166-233 194-264 (293)
154 2h6f_A Protein farnesyltransfe 96.8 0.004 1.4E-07 57.1 8.5 68 168-239 131-199 (382)
155 2hr2_A Hypothetical protein; a 96.8 0.0023 7.9E-08 54.1 6.4 66 168-237 57-133 (159)
156 3ulq_A Response regulator aspa 96.7 0.014 4.8E-07 50.4 10.9 68 166-233 222-291 (383)
157 3n71_A Histone lysine methyltr 96.7 0.017 5.9E-07 55.5 12.4 68 166-233 349-420 (490)
158 3mkr_A Coatomer subunit epsilo 96.6 0.0084 2.9E-07 51.7 8.9 66 170-239 202-268 (291)
159 2ff4_A Probable regulatory pro 96.6 0.022 7.5E-07 52.5 12.3 75 173-251 176-257 (388)
160 4abn_A Tetratricopeptide repea 96.5 0.013 4.3E-07 54.1 9.9 72 168-240 213-292 (474)
161 2h6f_A Protein farnesyltransfe 96.5 0.0059 2E-07 56.0 7.6 69 168-240 166-234 (382)
162 3n71_A Histone lysine methyltr 96.5 0.013 4.5E-07 56.3 10.3 69 165-233 306-378 (490)
163 2xpi_A Anaphase-promoting comp 96.5 0.0099 3.4E-07 53.4 8.7 64 170-237 375-438 (597)
164 1ouv_A Conserved hypothetical 96.5 0.034 1.2E-06 45.4 11.2 71 166-243 72-150 (273)
165 1hz4_A MALT regulatory protein 96.5 0.023 7.9E-07 48.4 10.6 69 169-237 94-166 (373)
166 2ifu_A Gamma-SNAP; membrane fu 96.4 0.008 2.7E-07 51.4 7.6 63 170-233 78-142 (307)
167 3u3w_A Transcriptional activat 96.4 0.01 3.4E-07 50.0 7.6 66 168-233 155-223 (293)
168 3q15_A PSP28, response regulat 96.3 0.0074 2.5E-07 52.3 7.0 69 166-234 180-250 (378)
169 2pzi_A Probable serine/threoni 96.3 0.0048 1.7E-07 59.9 6.2 63 171-238 504-566 (681)
170 3rjv_A Putative SEL1 repeat pr 96.3 0.021 7E-07 46.5 8.9 68 166-241 16-87 (212)
171 1hz4_A MALT regulatory protein 96.2 0.067 2.3E-06 45.5 12.1 65 169-233 15-80 (373)
172 3qww_A SET and MYND domain-con 96.2 0.017 5.7E-07 54.7 9.2 68 166-233 338-409 (433)
173 2kat_A Uncharacterized protein 96.2 0.01 3.4E-07 42.7 6.0 50 186-239 3-52 (115)
174 3ulq_A Response regulator aspa 96.2 0.011 3.9E-07 51.0 7.3 67 167-233 142-211 (383)
175 3qwp_A SET and MYND domain-con 96.2 0.017 5.9E-07 54.1 8.9 65 169-233 288-356 (429)
176 3qww_A SET and MYND domain-con 96.1 0.031 1E-06 52.9 10.4 66 168-233 298-367 (433)
177 1klx_A Cysteine rich protein B 96.1 0.045 1.5E-06 42.2 9.6 69 166-241 55-131 (138)
178 3qwp_A SET and MYND domain-con 96.1 0.02 6.9E-07 53.7 8.8 68 166-233 327-398 (429)
179 3ffl_A Anaphase-promoting comp 95.9 0.021 7.1E-07 49.5 7.3 74 168-241 63-157 (167)
180 4f3v_A ESX-1 secretion system 95.8 0.016 5.3E-07 52.8 6.6 66 170-238 137-202 (282)
181 3mv2_B Coatomer subunit epsilo 95.8 0.067 2.3E-06 49.4 10.8 65 171-237 103-167 (310)
182 1na3_A Designed protein CTPR2; 95.7 0.027 9.2E-07 37.8 6.1 49 168-220 43-91 (91)
183 4g1t_A Interferon-induced prot 95.7 0.091 3.1E-06 45.8 10.8 77 168-244 247-372 (472)
184 2ooe_A Cleavage stimulation fa 95.7 0.057 1.9E-06 49.3 9.8 65 172-241 17-81 (530)
185 3rjv_A Putative SEL1 repeat pr 95.6 0.11 3.9E-06 42.1 10.5 71 168-244 125-205 (212)
186 4b4t_Q 26S proteasome regulato 95.6 0.046 1.6E-06 47.1 8.5 67 167-233 134-202 (434)
187 2ond_A Cleavage stimulation fa 95.5 0.066 2.3E-06 45.4 8.9 57 174-233 105-161 (308)
188 2ond_A Cleavage stimulation fa 95.3 0.094 3.2E-06 44.5 9.4 62 175-238 210-273 (308)
189 3ly7_A Transcriptional activat 95.2 0.067 2.3E-06 50.9 9.0 74 172-250 281-354 (372)
190 1nzn_A CGI-135 protein, fissio 95.1 0.36 1.2E-05 39.7 11.9 81 168-253 35-118 (126)
191 2xm6_A Protein corresponding t 95.0 0.18 6.1E-06 45.5 10.6 66 167-238 362-435 (490)
192 3bee_A Putative YFRE protein; 94.8 0.1 3.5E-06 39.0 7.3 48 168-216 43-90 (93)
193 2kc7_A BFR218_protein; tetratr 94.8 0.016 5.4E-07 40.3 2.7 56 170-237 37-92 (99)
194 4g1t_A Interferon-induced prot 94.6 0.17 6E-06 44.0 9.2 75 171-246 337-412 (472)
195 2xm6_A Protein corresponding t 94.4 0.36 1.2E-05 43.6 11.2 66 168-240 75-148 (490)
196 3o48_A Mitochondria fission 1 93.7 0.12 4.1E-06 43.3 6.1 80 168-253 40-122 (134)
197 2ooe_A Cleavage stimulation fa 93.2 0.25 8.6E-06 45.0 8.0 55 181-238 292-353 (530)
198 1y8m_A FIS1; mitochondria, unk 93.0 0.32 1.1E-05 41.2 7.7 81 167-253 38-121 (144)
199 3e4b_A ALGK; tetratricopeptide 92.9 0.023 7.9E-07 52.0 0.7 52 175-233 42-101 (452)
200 1qsa_A Protein (soluble lytic 92.4 0.3 1E-05 48.7 7.9 73 171-250 289-361 (618)
201 2ff4_A Probable regulatory pro 92.1 1.2 4E-05 41.1 10.9 74 167-240 114-205 (388)
202 3ffl_A Anaphase-promoting comp 92.0 0.4 1.4E-05 41.4 7.2 63 170-232 22-89 (167)
203 1klx_A Cysteine rich protein B 90.4 1.9 6.5E-05 33.0 8.9 64 174-244 31-98 (138)
204 3ma5_A Tetratricopeptide repea 90.1 0.47 1.6E-05 33.9 5.0 34 206-239 7-40 (100)
205 3dra_A Protein farnesyltransfe 88.4 1.4 4.8E-05 39.7 7.9 69 168-240 32-103 (306)
206 3dss_A Geranylgeranyl transfer 87.9 2 6.8E-05 39.6 8.7 88 162-253 23-122 (331)
207 3mv2_B Coatomer subunit epsilo 87.9 1.8 6.3E-05 39.8 8.4 22 175-196 143-164 (310)
208 3e4b_A ALGK; tetratricopeptide 87.6 2.6 8.7E-05 38.5 9.2 65 172-244 217-288 (452)
209 1zu2_A Mitochondrial import re 87.1 0.37 1.3E-05 40.6 3.1 55 182-240 16-80 (158)
210 3u64_A Protein TP_0956; tetrat 86.9 6.3 0.00021 36.8 11.4 68 182-252 218-295 (301)
211 2cfu_A SDSA1; SDS-hydrolase, l 86.8 1.2 4E-05 44.5 6.9 54 168-225 449-502 (658)
212 1xi4_A Clathrin heavy chain; a 85.6 2 6.9E-05 48.1 8.5 75 156-239 1093-1167(1630)
213 2p58_C Putative type III secre 82.6 3.3 0.00011 34.2 6.6 68 175-252 47-114 (116)
214 3mkq_A Coatomer beta'-subunit; 82.5 0.95 3.3E-05 42.4 3.8 80 172-251 685-796 (814)
215 2xrh_A Protein HP0721; unknown 82.3 5.5 0.00019 32.2 7.7 76 75-156 6-86 (100)
216 2uwj_G Type III export protein 81.2 3.2 0.00011 34.3 6.0 68 175-252 46-113 (115)
217 1dce_A Protein (RAB geranylger 81.2 2.8 9.4E-05 40.5 6.7 69 167-239 27-106 (567)
218 2ijq_A Hypothetical protein; s 80.3 6.9 0.00024 33.3 8.1 84 167-250 31-129 (161)
219 1zbp_A Hypothetical protein VP 79.4 5.6 0.00019 36.7 7.8 67 175-245 4-70 (273)
220 3q7a_A Farnesyltransferase alp 76.9 8.1 0.00028 35.9 8.2 60 175-238 95-157 (349)
221 2yhe_A SEC-alkyl sulfatase; hy 77.7 0.55 1.9E-05 47.3 0.0 54 168-225 461-514 (668)
222 3txn_A 26S proteasome regulato 75.7 36 0.0012 32.2 12.4 97 148-244 79-181 (394)
223 1te4_A Conserved protein MTH18 75.6 20 0.00067 27.0 8.7 58 185-250 72-129 (131)
224 3dra_A Protein farnesyltransfe 74.4 19 0.00064 32.3 9.7 66 170-239 69-143 (306)
225 3ax2_A Mitochondrial import re 73.2 10 0.00035 28.6 6.4 38 167-204 16-53 (73)
226 2v5f_A Prolyl 4-hydroxylase su 71.5 7.2 0.00025 28.4 5.2 36 168-203 46-81 (104)
227 1dce_A Protein (RAB geranylger 71.4 15 0.00051 35.4 8.8 63 172-238 111-176 (567)
228 1pc2_A Mitochondria fission pr 71.1 6.9 0.00023 32.8 5.6 35 168-202 71-105 (152)
229 4g26_A Pentatricopeptide repea 68.3 18 0.00063 34.2 8.5 68 171-241 142-212 (501)
230 3u64_A Protein TP_0956; tetrat 67.4 8.8 0.0003 35.8 6.0 54 184-239 179-237 (301)
231 3myv_A SUSD superfamily protei 66.9 15 0.00051 34.3 7.5 51 184-234 164-218 (454)
232 1b89_A Protein (clathrin heavy 66.6 11 0.00037 36.6 6.7 22 173-194 153-174 (449)
233 3mv2_A Coatomer subunit alpha; 66.4 42 0.0015 31.6 10.4 83 171-254 117-255 (325)
234 3lew_A SUSD-like carbohydrate 66.2 18 0.00063 34.2 8.1 55 183-237 173-234 (495)
235 3ltm_A Alpha-REP4; protein eng 64.8 18 0.0006 28.7 6.6 62 185-254 142-203 (211)
236 3ltj_A Alpharep-4; protein eng 64.6 20 0.0007 28.1 6.9 62 185-254 137-198 (201)
237 2cwy_A Hypothetical protein TT 63.5 11 0.00038 29.0 5.0 59 171-231 4-64 (94)
238 1xi4_A Clathrin heavy chain; a 62.5 15 0.00051 41.4 7.5 52 170-233 1197-1248(1630)
239 3kez_A Putative sugar binding 61.5 20 0.00067 33.6 7.2 51 184-234 170-224 (461)
240 3mkr_B Coatomer subunit alpha; 61.4 96 0.0033 29.1 11.8 83 171-254 105-246 (320)
241 3mcx_A SUSD superfamily protei 60.8 23 0.0008 33.1 7.6 52 184-235 176-231 (477)
242 4gns_B Protein CSD3, chitin bi 59.8 19 0.00066 37.0 7.4 65 169-241 338-402 (754)
243 2vkj_A TM1634; membrane protei 59.4 15 0.0005 29.8 5.1 32 168-199 53-84 (106)
244 1b89_A Protein (clathrin heavy 59.2 4.8 0.00017 39.1 2.7 52 170-233 124-175 (449)
245 4g26_A Pentatricopeptide repea 59.1 27 0.00094 33.0 7.9 61 172-235 108-169 (501)
246 1nzn_A CGI-135 protein, fissio 58.7 12 0.00042 30.5 4.7 35 168-202 74-108 (126)
247 2hsb_A Hypothetical UPF0332 pr 57.6 24 0.00081 26.9 5.9 33 163-195 7-39 (126)
248 1om2_A Protein (mitochondrial 57.6 15 0.00051 29.1 4.8 37 167-203 19-55 (95)
249 4b4t_P 26S proteasome regulato 56.2 1E+02 0.0035 28.8 11.1 76 168-243 137-218 (445)
250 3jq1_A SUSD superfamily protei 55.8 18 0.00062 34.2 6.0 50 184-233 154-207 (481)
251 3mkq_B Coatomer subunit alpha; 55.8 32 0.0011 29.5 7.0 37 157-193 23-59 (177)
252 3l9t_A Putative uncharacterize 55.4 52 0.0018 29.8 8.6 73 175-252 26-98 (240)
253 2ynq_A ESSB; membrane protein, 54.4 1E+02 0.0036 26.5 9.9 82 168-257 8-122 (161)
254 4e6h_A MRNA 3'-END-processing 54.1 18 0.0006 36.3 5.9 60 172-235 347-407 (679)
255 3hdx_A SUSD homolog, SUSD supe 53.4 29 0.001 32.5 6.9 52 184-235 156-226 (478)
256 2wpv_A GET4, UPF0363 protein Y 53.2 1.4E+02 0.0047 27.5 11.6 54 168-221 32-88 (312)
257 3snx_A SUSD homolog, putative 52.1 35 0.0012 32.1 7.3 53 184-236 160-221 (460)
258 3qnk_A Putative lipoprotein; a 51.6 38 0.0013 32.1 7.5 51 184-234 153-210 (517)
259 4e6h_A MRNA 3'-END-processing 51.4 87 0.003 31.3 10.3 53 182-238 484-536 (679)
260 3jys_A SUSD superfamily protei 51.0 33 0.0011 32.7 7.0 51 184-234 161-222 (499)
261 1wol_A ST0689, 122AA long cons 50.4 32 0.0011 26.3 5.7 34 163-196 6-39 (122)
262 3ly7_A Transcriptional activat 49.9 52 0.0018 31.2 8.1 31 173-203 201-234 (372)
263 1ufb_A TT1696 protein; structu 48.2 29 0.001 26.5 5.1 34 163-196 6-39 (127)
264 3ltj_A Alpharep-4; protein eng 47.3 40 0.0014 26.4 5.9 45 207-253 91-135 (201)
265 4b4t_R RPN7, 26S proteasome re 46.7 81 0.0028 29.2 8.7 76 167-243 130-208 (429)
266 2vgl_A Adaptor protein complex 45.7 21 0.00072 34.8 4.8 89 179-271 502-606 (621)
267 3q7a_A Farnesyltransferase alp 45.3 62 0.0021 30.0 7.7 59 177-239 62-122 (349)
268 3mkq_B Coatomer subunit alpha; 43.2 51 0.0017 28.2 6.3 47 177-232 14-60 (177)
269 1ya0_A SMG-7 transcript varian 42.1 1.8E+02 0.0061 28.2 10.7 83 169-255 153-237 (497)
270 3l8r_A PTCA, putative PTS syst 40.6 99 0.0034 25.3 7.4 62 151-216 20-81 (120)
271 3ltm_A Alpha-REP4; protein eng 40.5 58 0.002 25.6 5.9 43 208-252 97-139 (211)
272 4b4t_P 26S proteasome regulato 40.4 94 0.0032 29.1 8.2 89 168-256 177-273 (445)
273 4fx5_A VON willebrand factor t 40.4 50 0.0017 31.4 6.4 32 165-196 379-410 (464)
274 1w63_A Adapter-related protein 40.2 55 0.0019 31.5 6.7 79 187-272 510-594 (618)
275 3t5x_A PCI domain-containing p 39.7 1.1E+02 0.0037 25.9 7.8 57 166-222 12-69 (203)
276 2w2u_A Hypothetical P60 katani 39.2 40 0.0014 25.3 4.5 30 167-196 18-47 (83)
277 2vgl_B AP-2 complex subunit be 39.0 41 0.0014 32.0 5.6 74 178-254 449-532 (591)
278 2v6y_A AAA family ATPase, P60 38.7 42 0.0014 25.0 4.5 30 167-196 10-39 (83)
279 4fm3_A Uncharacterized hypothe 37.4 53 0.0018 26.2 5.1 33 164-196 30-62 (98)
280 1o3u_A Conserved hypothetical 37.4 49 0.0017 26.1 5.0 31 166-196 14-44 (135)
281 3i4g_A SUSD-like carbohydrate 37.3 79 0.0027 30.3 7.3 51 184-234 167-226 (528)
282 1te4_A Conserved protein MTH18 35.9 59 0.002 24.3 5.0 59 188-254 44-102 (131)
283 3ckc_A SUSD; TPR repeat, carbo 35.7 84 0.0029 29.1 7.0 51 184-234 169-231 (527)
284 2qf9_A Putative secreted prote 35.3 37 0.0013 28.7 4.1 33 221-253 123-155 (179)
285 3lpz_A GET4 (YOR164C homolog); 33.4 3E+02 0.01 25.7 11.3 43 178-220 45-89 (336)
286 2pmr_A Uncharacterized protein 32.5 1.7E+02 0.0059 22.5 7.5 48 144-191 10-62 (87)
287 4ffb_C Protein STU2; tubulin f 32.1 1E+02 0.0034 26.1 6.4 65 185-252 138-210 (278)
288 3vkg_A Dynein heavy chain, cyt 32.1 2.7E+02 0.0093 33.6 11.7 27 150-176 1981-2007(3245)
289 1oyz_A Hypothetical protein YI 31.8 1.4E+02 0.0048 24.5 7.1 46 207-253 174-220 (280)
290 3ihv_A SUSD homolog; NP_813570 31.1 87 0.003 29.6 6.4 51 184-234 163-232 (535)
291 3dss_A Geranylgeranyl transfer 30.6 3.1E+02 0.011 24.9 17.0 53 183-239 125-178 (331)
292 3spa_A Mtrpol, DNA-directed RN 30.6 46 0.0016 36.3 4.8 66 165-234 123-193 (1134)
293 1wy6_A Hypothetical protein ST 30.6 76 0.0026 27.7 5.3 44 190-233 109-152 (172)
294 4a5x_A MITD1, MIT domain-conta 30.5 78 0.0027 23.8 4.9 29 168-196 16-44 (86)
295 3mkq_A Coatomer beta'-subunit; 30.1 1E+02 0.0036 28.7 6.6 50 175-233 659-708 (814)
296 1wcr_A PTS system, N, N'-diace 29.4 1.9E+02 0.0066 22.7 7.2 43 154-196 4-46 (103)
297 3o10_A Sacsin; all-helical dom 29.4 58 0.002 26.2 4.2 35 162-196 10-44 (141)
298 2v6y_A AAA family ATPase, P60 29.3 98 0.0034 23.0 5.2 16 216-231 21-36 (83)
299 1lq7_A Alpha3W; three helix bu 29.2 1.4E+02 0.0049 22.0 5.9 24 115-138 27-50 (67)
300 2v6x_A Vacuolar protein sortin 29.1 1E+02 0.0035 22.6 5.2 29 168-196 13-41 (85)
301 3txn_A 26S proteasome regulato 29.0 3E+02 0.01 25.9 9.7 91 166-257 178-271 (394)
302 2cpt_A SKD1 protein, vacuolar 29.0 1.4E+02 0.0048 23.7 6.4 31 166-196 16-46 (117)
303 3o48_A Mitochondria fission 1 28.9 59 0.002 27.0 4.3 35 168-202 78-112 (134)
304 3jq0_A SUSD superfamily protei 28.9 42 0.0014 31.7 3.8 50 184-233 153-218 (493)
305 1oyz_A Hypothetical protein YI 28.8 1.2E+02 0.0041 24.9 6.2 61 185-253 127-187 (280)
306 1y8m_A FIS1; mitochondria, unk 28.6 67 0.0023 27.0 4.6 34 169-202 78-111 (144)
307 2w2u_A Hypothetical P60 katani 28.0 1.1E+02 0.0036 23.0 5.2 15 216-230 29-43 (83)
308 1wjt_A Transcription elongatio 27.4 87 0.003 24.6 4.8 60 179-254 25-84 (103)
309 1zpy_A Hypothetical protein NE 26.7 70 0.0024 25.4 4.1 37 212-248 20-56 (95)
310 2i9c_A Hypothetical protein RP 26.0 1.9E+02 0.0064 23.7 6.7 54 177-249 27-81 (123)
311 3otn_A SUSD superfamily protei 25.0 72 0.0025 29.9 4.6 51 184-234 160-225 (482)
312 1wfd_A Hypothetical protein 15 24.8 77 0.0026 24.0 4.0 30 167-196 14-43 (93)
313 4b4t_R RPN7, 26S proteasome re 24.6 3.2E+02 0.011 25.1 8.9 77 168-244 168-246 (429)
314 4ady_A RPN2, 26S proteasome re 23.9 1.1E+02 0.0036 32.8 6.0 79 171-252 527-605 (963)
315 1wfd_A Hypothetical protein 15 23.3 1.4E+02 0.0049 22.5 5.2 13 217-229 26-38 (93)
316 2e2a_A Protein (enzyme IIA); h 23.2 2.8E+02 0.0095 21.9 7.4 52 165-220 17-68 (105)
317 4efa_E V-type proton ATPase su 22.7 3.6E+02 0.012 22.9 8.5 31 101-133 13-43 (233)
318 4afl_A P29ING4, inhibitor of g 22.6 2.5E+02 0.0086 21.2 8.3 34 145-178 62-95 (104)
319 2crb_A Nuclear receptor bindin 22.5 84 0.0029 25.2 3.8 24 173-196 20-43 (97)
320 3nqp_A SUSD superfamily protei 22.3 99 0.0034 29.2 5.0 51 184-234 167-241 (514)
321 2cpt_A SKD1 protein, vacuolar 21.9 3E+02 0.01 21.8 10.0 13 184-196 41-53 (117)
322 3ax2_A Mitochondrial import re 21.7 1.1E+02 0.0037 22.9 4.2 38 209-253 20-58 (73)
323 3iqc_A FLIS, flagellar protein 21.6 1.4E+02 0.0047 24.1 5.1 54 166-219 34-92 (131)
324 3vp9_A General transcriptional 21.0 1.4E+02 0.0046 23.6 4.7 48 100-157 40-87 (92)
325 1om2_A Protein (mitochondrial 21.0 93 0.0032 24.5 3.8 39 209-254 23-62 (95)
326 3l22_A SUSD superfamily protei 20.8 50 0.0017 30.6 2.6 52 184-237 172-231 (441)
327 3eab_A Spastin; spastin, MIT, 20.4 35 0.0012 26.8 1.2 23 171-193 19-44 (89)
328 2jpu_A ORF C02003 protein; sol 20.2 78 0.0027 26.1 3.4 31 166-196 5-35 (129)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.84 E-value=3.9e-08 Score=79.32 Aligned_cols=82 Identities=7% Similarity=0.010 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+...+..|...+..|+|.+||..|++++...|.+.. +.+.|+.+|...|+.++|+..|++.....|++.+++.|+.
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~ 145 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT----PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455677899999999999999999999998876654 9999999999999999999999999989999999999999
Q ss_pred HHHHhc
Q 023077 248 LRYILQ 253 (287)
Q Consensus 248 LLyILE 253 (287)
+|..|+
T Consensus 146 ll~~l~ 151 (151)
T 3gyz_A 146 YLDAIQ 151 (151)
T ss_dssp HHHHHC
T ss_pred HHHhhC
Confidence 999874
No 2
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.76 E-value=1.4e-07 Score=68.29 Aligned_cols=85 Identities=12% Similarity=0.156 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
...+..|...+..|+|..|+..|+.++...|.+ +....+.++++.+|...|+.++|+..|+.+...+|+......|...
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 457888999999999999999999999976644 3346799999999999999999999999999999999999999888
Q ss_pred HHHhcC
Q 023077 249 RYILQA 254 (287)
Q Consensus 249 LyILEA 254 (287)
|..|..
T Consensus 119 l~~l~~ 124 (129)
T 2xev_A 119 LQSIRL 124 (129)
T ss_dssp HHHHC-
T ss_pred HHHHHh
Confidence 877754
No 3
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.1e-06 Score=61.72 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.+...+..|...+..|+|.+|++.|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35567889999999999999999999999987665 4689999999999999999999999999788874
No 4
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.51 E-value=7.2e-07 Score=72.82 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+...|..|...+.+|+|.+||..|+.++...| .++....++++|+.+|...|+.++||..|+++++.+|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 56789999999999999999999999998655 45556789999999999999999999999999989998653
No 5
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=1.7e-06 Score=62.63 Aligned_cols=69 Identities=20% Similarity=0.365 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..|..|...+..|+|..|+..|+.++...|. +.....+.++++.+|...|+.++|+..|+.+...+|+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 4688999999999999999999999997664 45556799999999999999999999999999889985
No 6
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.47 E-value=7.4e-07 Score=65.02 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES---NHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~---~HPd~qVRqQ 244 (287)
+...+..|...+..|+|.+|+.+|++++...|.+.. +.+.|+.+|...|+.++|+..|++... .+++......
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 345788999999999999999999999998776554 999999999999999999999998763 3566666666
Q ss_pred HHHHHHHh
Q 023077 245 AADLRYIL 252 (287)
Q Consensus 245 AKqLLyIL 252 (287)
...+|..+
T Consensus 83 l~~~l~~~ 90 (100)
T 3ma5_A 83 LQDAKLKA 90 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666554
No 7
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.43 E-value=2.2e-06 Score=66.96 Aligned_cols=83 Identities=10% Similarity=0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----HHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS----KNIRR 243 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd----~qVRq 243 (287)
+...+..|...+..|+|.+|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.....|+ ..++.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHH
Confidence 44567889999999999999999999999877655 48999999999999999999999999877776 67788
Q ss_pred HHHHHHHHhcC
Q 023077 244 QAADLRYILQA 254 (287)
Q Consensus 244 QAKqLLyILEA 254 (287)
.|..+|..|..
T Consensus 131 ~~~~~l~~l~~ 141 (148)
T 2vgx_A 131 RVSSMLEAIKL 141 (148)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 88888877654
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.5e-06 Score=63.73 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+.+|+|.+|+..|++++...|.+. .+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 44556666677777777777777777666555432 46666677777777777777777666655554
No 9
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=1.3e-06 Score=66.74 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++...+.|...|.+|+|.+||+.|++++...|.+. .+.+.++.+|...|+.++||..|++.++-.|+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 79 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence 33444556666666666666666666666544432 35556666666666666666666665544444
No 10
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.41 E-value=2.4e-06 Score=70.14 Aligned_cols=72 Identities=25% Similarity=0.343 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.+...|..|...+.+|+|.+||..|++++...| .++....+.++|+.+|...|+.++|+..|+++++.+|+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 367789999999999999999999999999665 445567899999999999999999999999999888854
No 11
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2e-06 Score=65.38 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP----SKNIRR 243 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP----d~qVRq 243 (287)
....+..|...+..|+|..|+..|+.++...|.+.. +.+.|+.+|...|+.++|+..|++....+| ...++.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR----FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 445677899999999999999999999998776544 899999999999999999999999886777 456777
Q ss_pred HHHHHHHHhc
Q 023077 244 QAADLRYILQ 253 (287)
Q Consensus 244 QAKqLLyILE 253 (287)
.+..+|..+.
T Consensus 128 ~~~~~l~~l~ 137 (142)
T 2xcb_A 128 RAGAMLEAVT 137 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777654
No 12
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=3.4e-06 Score=59.49 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG---GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG---GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+...+..|...+..|+|.+|+.+|+.++...+.+.... ..+.+.++.+|...|+.++|+..|+.....+|++.+...
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 117 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34567889999999999999999999998776432221 678999999999999999999999999988999999888
Q ss_pred HHHHHHHhc
Q 023077 245 AADLRYILQ 253 (287)
Q Consensus 245 AKqLLyILE 253 (287)
...+...+.
T Consensus 118 l~~~~~~~~ 126 (131)
T 1elr_A 118 CQQAEKILK 126 (131)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776664
No 13
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.37 E-value=4.4e-06 Score=62.52 Aligned_cols=79 Identities=23% Similarity=0.222 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+..-|..|..+|.+|+|.+||.+|+.|+...+.. ...-..+...|+.+|...|+.++|+.+++.+.+-.|+......
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4567899999999999999999999999866433 2334588999999999999999999999999878887655433
Q ss_pred HH
Q 023077 245 AA 246 (287)
Q Consensus 245 AK 246 (287)
..
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
No 14
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.37 E-value=3.6e-06 Score=69.07 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN----------NRHADCIALYKQLESNHP 237 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~----------Gq~EkAIALCQ~L~~~HP 237 (287)
++..|..|...+.+|+|..||..|+.++...| +++...++.++|+.+|... |+.++|+..|++++..+|
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYP-DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 34478999999999999999999999998765 4555678999999999988 888999999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 023077 238 SKNIRRQAADLRYIL 252 (287)
Q Consensus 238 d~qVRqQAKqLLyIL 252 (287)
+......|..+|..+
T Consensus 227 ~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 227 DSPLLRTAEELYTRA 241 (261)
T ss_dssp TCTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 998888888776654
No 15
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.32 E-value=6.2e-06 Score=60.68 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH-HHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK-NIRRQA 245 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~-qVRqQA 245 (287)
.+...+..|...+..|+|.+|+..|++++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+. .+....
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH----QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 35567889999999999999999999999987766 4699999999999999999999999988777754 454444
Q ss_pred HHHHH
Q 023077 246 ADLRY 250 (287)
Q Consensus 246 KqLLy 250 (287)
+.+..
T Consensus 102 ~ai~~ 106 (117)
T 3k9i_A 102 QAILF 106 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 16
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=5.1e-06 Score=63.16 Aligned_cols=79 Identities=8% Similarity=0.117 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC---chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF---FGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~---lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+...+..|...+..|+|..||+.|++++...|.+.. .-+.+...|+.+|.+.|+.++||..|++-...+|++++.+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~ 121 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 345667788888888888888888888876654432 23567777888888888888888888876667888887655
Q ss_pred HH
Q 023077 245 AA 246 (287)
Q Consensus 245 AK 246 (287)
-+
T Consensus 122 l~ 123 (127)
T 4gcn_A 122 VK 123 (127)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.27 E-value=5.3e-06 Score=58.36 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGE-IQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGE-AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.|+.|...+..|+|.+|+..|+.++...|.+ .. +.+.++.+|...|+.++|+..|++....+|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 4788999999999999999999999976644 35 899999999999999999999999998888653
No 18
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.26 E-value=8.2e-06 Score=55.49 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+.+|++++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4567888999999999999999999999976654 4689999999999999999999999998777754
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.26 E-value=5.4e-06 Score=63.80 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY----SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 4567788999999999999999999999987665 46899999999999999999999999887777653
No 20
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.25 E-value=5.2e-06 Score=57.52 Aligned_cols=66 Identities=17% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 344555555555555555555555555544332 235555555555555555555555555544443
No 21
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=6.7e-06 Score=62.45 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...|..|...+.+|+|.+|+.+|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45678899999999999999999999999777554 489999999999999999999999999777753
No 22
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.23 E-value=2.8e-06 Score=64.63 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
.|....+.|...|.+|+|.+||++|+++++..|.+ ..+...++.+|...|+.++||..|++.+.-.|
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~----~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34455678999999999999999999999987765 35889999999999999999999999874433
No 23
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=5.8e-06 Score=63.52 Aligned_cols=80 Identities=19% Similarity=0.032 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH--HHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK--NIRRQAA 246 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~--qVRqQAK 246 (287)
...+..|...+..|+|..|+..++.++...|.+. .+.+.++.+|...|+.++|+..|++.....|+. .++..-.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNE----KALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4566778888888999999999999988766553 588899999999999999999999888777764 3454444
Q ss_pred HHHHHh
Q 023077 247 DLRYIL 252 (287)
Q Consensus 247 qLLyIL 252 (287)
.+...+
T Consensus 140 ~~~~~~ 145 (162)
T 3rkv_A 140 IVTERR 145 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.21 E-value=4.6e-06 Score=64.26 Aligned_cols=71 Identities=21% Similarity=0.265 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+++...+..|...+.+|+|.+|++.|+++++..|.+. .+.+.|+.+|...|+.++|+..|+.+...+|+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 73 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA 73 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH
Confidence 4566788999999999999999999999999877653 5999999999999999999999999987888754
No 25
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.20 E-value=7e-06 Score=66.08 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+...|..|...+.+|+|.+|+..|++++...|.+.. +.+.|+.+|...|+.++||..|++.+.-.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3557899999999999999999999999998776544 8999999999999999999999999988887
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.19 E-value=6.9e-06 Score=62.12 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.|..|...+..|+|.+|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.+...|+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34555555666666666666666665444332 35556666666666666666666555545553
No 27
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.18 E-value=5.9e-06 Score=60.02 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP---SKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP---d~qVRqQ 244 (287)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++.....| +......
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY----SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKE 94 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHH
Confidence 4467888999999999999999999999977654 45899999999999999999999999875554 4444444
Q ss_pred HHHHHHHh
Q 023077 245 AADLRYIL 252 (287)
Q Consensus 245 AKqLLyIL 252 (287)
...+|..|
T Consensus 95 l~~~l~~l 102 (115)
T 2kat_A 95 LQVFLRRL 102 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.18 E-value=9.9e-06 Score=63.04 Aligned_cols=80 Identities=16% Similarity=0.284 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQA 245 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQA 245 (287)
.....|..|...+..|+|..|+++|++++...|.+. .+.+.|+.+|...|+.++|+..|++.++.+|+ +.+.-.-
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP----KAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI 105 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344568889999999999999999999999776653 59999999999999999999999998878886 4444444
Q ss_pred HHHHH
Q 023077 246 ADLRY 250 (287)
Q Consensus 246 KqLLy 250 (287)
-.++.
T Consensus 106 a~~~~ 110 (150)
T 4ga2_A 106 AELLC 110 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 29
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.18 E-value=9.4e-06 Score=63.39 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.+...+..|...+.+|+|.+|+..|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 355678899999999999999999999999777654 488999999999999999999999998777753
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=1.1e-05 Score=58.78 Aligned_cols=65 Identities=11% Similarity=-0.059 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+..|...+..|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++.....|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 344445555555555555555555555544332 23555555555555555555555555543333
No 31
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.14 E-value=3.5e-05 Score=57.08 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 4556777888899999999999999999876644 35889999999999999999999999887777543
No 32
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=3.7e-05 Score=55.91 Aligned_cols=67 Identities=15% Similarity=-0.039 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4556666777777777777777777777765443 357777777777777777777777777666664
No 33
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=2e-05 Score=57.70 Aligned_cols=65 Identities=15% Similarity=-0.038 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
+...+..|...+..|+|.+|+..|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF----VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 4567888999999999999999999999987765 4599999999999999999999999988677
No 34
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.12 E-value=4.9e-06 Score=67.48 Aligned_cols=69 Identities=23% Similarity=0.439 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHH----------------HHHHHHHcCChHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIW----------------LAMAYEANNRHADCIALYK 230 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmw----------------LAtAYqa~Gq~EkAIALCQ 230 (287)
.+...+..|..++..|+|.+|+..|++++...|.+ ..+.++ |+.+|...|+.++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR----TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH----HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35668899999999999999999999999976544 458888 9999999999999999999
Q ss_pred HHHHhCCCH
Q 023077 231 QLESNHPSK 239 (287)
Q Consensus 231 ~L~~~HPd~ 239 (287)
+.+..+|+.
T Consensus 79 ~al~~~p~~ 87 (208)
T 3urz_A 79 ELLQKAPNN 87 (208)
T ss_dssp HHHHHCTTC
T ss_pred HHHHHCCCC
Confidence 999888864
No 35
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=1.9e-05 Score=55.61 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
++...+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc
Confidence 46678899999999999999999999999976654 468999999999999999999999998866553
No 36
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.12 E-value=2.4e-05 Score=59.67 Aligned_cols=68 Identities=15% Similarity=0.042 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|..||+.|++++...|.+. .+.+.|+.+|...|+.++|+..|++..+-.|+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI----KGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 55678889999999999999999999999877654 599999999999999999999999999888864
No 37
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.11 E-value=1.7e-05 Score=54.59 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+..|...+..|+|..|+++|++++...+. ..-..+.+.|+.+|... |+.++|+..++.+...+|++
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 3567778888888888888888888876554 11246788888888888 88888888888888777653
No 38
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=4.9e-05 Score=53.29 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 344555666666777777777777766654433 346666667777777777777777666655553
No 39
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=7.6e-05 Score=54.23 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|..|+.+|+.++...|.+ ..-..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 4567889999999999999999999999876532 2235789999999999999999999999998788853
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.08 E-value=6.3e-05 Score=69.43 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077 168 AQLMFELGQKAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (287)
Q Consensus 168 ae~~yeaG~aALerGdY-~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (287)
+...+..|...+..|+| .+|+++|+++++..|.+ ..+.+.|+.+|...|+.++|+.+|++.....|++.+.
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL----VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 77889999999999999 99999999999987654 4599999999999999999999999999888885443
No 41
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=2.7e-05 Score=53.62 Aligned_cols=64 Identities=17% Similarity=0.267 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|...+.+|+|.+|+..|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEE----SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 4567889999999999999999999977654 358999999999999999999999999977776
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=2.7e-05 Score=55.44 Aligned_cols=67 Identities=16% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|.+|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF----IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 3445555666666666666666666666654432 346666666666666666666666666645554
No 43
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=4e-05 Score=60.70 Aligned_cols=80 Identities=16% Similarity=0.010 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQAAD 247 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQAKq 247 (287)
...+..|...+..|+|.+|+..|+.++...| .-..+.+.++.+|...|+.++|+..|++....+|+ +.+...-..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 4556677788888888888888888888532 23578888888888888888888888887767764 445555444
Q ss_pred HHHHh
Q 023077 248 LRYIL 252 (287)
Q Consensus 248 LLyIL 252 (287)
++..+
T Consensus 165 ~~~~~ 169 (198)
T 2fbn_A 165 CVNKL 169 (198)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 44
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=8.4e-06 Score=61.66 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|.+|+..|++++...|.+. .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 55678899999999999999999999999877654 49999999999999999999999999866665
No 45
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=4e-05 Score=58.78 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE 217 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq 217 (287)
+...|..|...+..|+|..|+..|+.++...|.+.. .++..|..+..
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~l~~~~~ 143 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS---VVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHH
Confidence 567788899999999999999999999998765542 24444544443
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.01 E-value=0.00011 Score=51.46 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 346678899999999999999999999999976654 4689999999999999999999999998788873
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.99 E-value=5.1e-05 Score=52.75 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|.+|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 344556666677777777777777776654433 246666777777777777777777766655554
No 48
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=3.8e-05 Score=53.09 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|..|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW----GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 4557788999999999999999999999976643 4689999999999999999999999998677754
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.99 E-value=1.9e-05 Score=60.76 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|.+||+.|+++++..|.+ ..+.+.|+.+|...|+.++|+..|++.++.+|+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 107 ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF----IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh----hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 4456778999999999999999999999987655 358999999999999999999999998855553
No 50
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.97 E-value=2.9e-05 Score=59.70 Aligned_cols=69 Identities=22% Similarity=0.246 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+...+..|...+.+|+|.+|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|++.+..+|+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 356678999999999999999999999999987765 459999999999999999999999999988887
No 51
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.97 E-value=3.5e-05 Score=61.48 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+..|...+..|+|.+|+..|++++...|. ...+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYN----LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 4445566666666666666666666654333 2346666666666666666666666666655555
No 52
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.95 E-value=8.6e-05 Score=58.75 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~ 233 (287)
....+..|...+..|+|..|+..|+.++...|.+ ..++..|+.++...|+.+++. ..|+.+-
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN----LDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999987655 359999999999999988887 6666665
No 53
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=4.6e-05 Score=55.53 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|..|+..|..++...|.+ ..+.+.++.+|...|+.++|+..|+..+..+|+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 5678899999999999999999999999987654 3599999999999999999999999999788873
No 54
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.94 E-value=3.7e-05 Score=62.29 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
.+..|...+..|+|.+|+..|+++++..|.+. .+.+.|+.+|...|+.++|+..|++.+..+|+..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 45589999999999999999999999877654 5999999999999999999999999998899743
No 55
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.92 E-value=4.6e-05 Score=62.07 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH------------------cCChHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA------------------NNRHADCIALYK 230 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa------------------~Gq~EkAIALCQ 230 (287)
...|..|...+..|+|.+||..|+.++...|.+.. ...+.++++.+|.. .|+.++|+..|+
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 45788899999999999999999999998776543 45688999999876 689999999999
Q ss_pred HHHHhCCCHHHHHHHH
Q 023077 231 QLESNHPSKNIRRQAA 246 (287)
Q Consensus 231 ~L~~~HPd~qVRqQAK 246 (287)
++++.+|+......|.
T Consensus 121 ~~l~~~P~~~~a~~a~ 136 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDAT 136 (225)
T ss_dssp HHHTTCTTCTTHHHHH
T ss_pred HHHHHCcCChhHHHHH
Confidence 9999999976555444
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.90 E-value=0.00018 Score=49.98 Aligned_cols=68 Identities=28% Similarity=0.440 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+++|+.++...+.+ ..+.+.++.+|...|+.++|+.+|+.....+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 4557888999999999999999999999876543 3589999999999999999999999998777753
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.89 E-value=4e-05 Score=62.52 Aligned_cols=67 Identities=27% Similarity=0.320 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
...+..|...+.+|+|.+|+..|++++...|.+. .+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4567889999999999999999999999766553 599999999999999999999999999888874
No 58
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.88 E-value=0.00011 Score=52.31 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+.+|+|..|+..|++++...+.+ ..+.+.++.+|...|+.++|+.+|++..+.+|+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC----HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 4567889999999999999999999999876554 569999999999999999999999999877776
No 59
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.88 E-value=7.8e-05 Score=55.20 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+...+..|...+.+|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345556666666777777777777777766655443 346666677777777777777777666655554
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.87 E-value=7.4e-05 Score=64.97 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
...++..+..|..++.+|+|.+|+..|+.++...| + ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-D----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-c----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 44566677777777777777777777777777654 2 4567777777777777777777777776666654
No 61
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.86 E-value=4.4e-05 Score=65.38 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIR 242 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVR 242 (287)
...+..|..++.+|+|.+|++.|++++...|.+. .+++.|+.+|...|+.++|+++|+++...+|++...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 3468889999999999999999999999877664 599999999999999999999999998788877644
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.81 E-value=0.00031 Score=54.84 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT------------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S------------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
+...+..|...+..|+|..|++.|+.++...+.+. +....+.+.++.+|...|+.++|+..|++....
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 45678889999999999999999999999877654 344589999999999999999999999999978
Q ss_pred CCCHHHH
Q 023077 236 HPSKNIR 242 (287)
Q Consensus 236 HPd~qVR 242 (287)
+|+....
T Consensus 151 ~p~~~~~ 157 (213)
T 1hh8_A 151 KSEPRHS 157 (213)
T ss_dssp CCSGGGG
T ss_pred Ccccccc
Confidence 8876543
No 63
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.79 E-value=2.3e-05 Score=61.39 Aligned_cols=68 Identities=6% Similarity=0.057 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
..+..|...+..|+|.+|+..|++++...|.+. .+++.|+.+|...|+.++|+.+|+++....|++.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQDNSY 75 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH
Confidence 467889999999999999999999999776654 49999999999999999999999999877775544
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.79 E-value=0.00037 Score=56.99 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
..|...+..|+|.+|+..|+.++...|.+...-..+.+.++.+|...|+.++|+.+|++..+.+|
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 34555556666666666666666555544433334455555666666666666666666554455
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.76 E-value=0.00011 Score=60.17 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
....+..|...+..|+|..|+..|+.++...|.+. .+.+.++.+|...|+.++|+.+|++..+..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 44566667777777777777777777777544332 4777777777777777777777777775555
No 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.76 E-value=5.7e-05 Score=66.50 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+...+..|...+.+|+|..|+..|+.++...|.+. .+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 22 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 91 (537)
T 3fp2_A 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----VFYSNISACYISTGDLEKVIEFTTKALEIKPD 91 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 44566777888888888888888888888887665442 57788888888888888888888887766776
No 67
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.71 E-value=0.00031 Score=48.82 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+++......|+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 34455666666677777777777666654432 346666666777777777777776666544443
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.71 E-value=0.00012 Score=58.30 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|.+|+..|++++...|.... .+.++++.+|...|+.++|+..|++....+|+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 356889999999999999999999999998873333 588999999999999999999999999788874
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00038 Score=55.74 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+...+..|...+.+|+|.+|+.+|++++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999987666555446788889999999999999999988754
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.69 E-value=0.00042 Score=53.17 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~ 233 (287)
...+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.++.+|... |+.++|+.+|+...
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----AEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344555666666666666666666666654432 23566666666666 66666666666666
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.69 E-value=0.00023 Score=56.73 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
....+..|...+..|+|..|+.+|+.++...|.+. .+.+.|+.+|...|+.++|+.+|++....+|+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 45667789999999999999999999999876654 5899999999999999999999999987888765
No 72
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.68 E-value=0.00014 Score=58.36 Aligned_cols=69 Identities=10% Similarity=0.019 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+..|...+..|+|.+|+..|+.++. .+.+...-..+.+.++.+|...|+.++|+..|++..+.+|+.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence 455666777777777777777777777 444455556667777777777777777777777777666543
No 73
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00018 Score=56.39 Aligned_cols=68 Identities=16% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..++..+..|...+.+|+|.+|+.+|+.++... .. ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD---ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 357788999999999999999999999999977 33 369999999999999999999999999865553
No 74
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.68 E-value=0.00012 Score=62.64 Aligned_cols=68 Identities=12% Similarity=-0.037 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+.
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQS----VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 5567778888999999999999999998865544 3588999999999999999999998877566644
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.67 E-value=0.00022 Score=55.64 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 3467888999999999999999999999976544 468999999999999999999999999866665
No 76
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.66 E-value=0.0002 Score=49.88 Aligned_cols=67 Identities=30% Similarity=0.466 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|..|+.+|+.++...+.. ..+.+.++.+|...|+.++|+.+++.....+|+
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 4455667888888999999999999988865543 357888899999999999999999888866765
No 77
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.65 E-value=0.00025 Score=57.74 Aligned_cols=68 Identities=26% Similarity=0.215 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|.+|++.|++++... .. ..+.+.|+.+|...|+.++|+..|++....+|+..
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE--DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 4556788999999999999999999999977 33 36999999999999999999999999998888654
No 78
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00035 Score=63.31 Aligned_cols=83 Identities=14% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (287)
..+...+..|...+..|+|.+|+++++.++...|.+ ..+.+.++.+|...|+.++|+..|++..+..|+ +.+...
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN----TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 346678899999999999999999999999976644 469999999999999999999999998878884 555555
Q ss_pred HHHHHHHh
Q 023077 245 AADLRYIL 252 (287)
Q Consensus 245 AKqLLyIL 252 (287)
-..++..+
T Consensus 347 l~~~~~~~ 354 (370)
T 1ihg_A 347 LLKVKQKI 354 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 79
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.63 E-value=0.00034 Score=56.08 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+..|...+..|+|.+|+..|+.++...|.+. .+...++.+|...|+.++|+..|++....+|+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 367889999999999999999999999777654 489999999999999999999999988666654
No 80
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.62 E-value=0.00028 Score=62.20 Aligned_cols=68 Identities=16% Similarity=0.006 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+..|++++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNN----EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 3667788888999999999999999999977654 3589999999999999999999999988788864
No 81
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.62 E-value=0.00063 Score=59.98 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC-IALYKQLES 234 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~L~~ 234 (287)
+...|..|...+..|+|.+|+..|++++...|.+. .+...|+.+|...|+.++| ..+|+.+..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK----AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999877654 5999999999999999999 678888873
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00075 Score=52.87 Aligned_cols=68 Identities=15% Similarity=0.077 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 35567778888899999999999999998876654 358888999999999999999999988877776
No 83
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.62 E-value=0.00038 Score=55.49 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 109 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc
Confidence 4445556666666666666666666666654432 235666666666666666666666666655553
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.60 E-value=0.00037 Score=51.48 Aligned_cols=59 Identities=27% Similarity=0.483 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++..
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIALGLRPNE----GKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555543322 2455555555555555555555555554
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.60 E-value=0.00069 Score=56.77 Aligned_cols=66 Identities=15% Similarity=0.045 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
|...+..|...+.+|+|..|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 556678888889999999999999998887666555446788888889999999999988888754
No 86
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.59 E-value=0.00031 Score=59.43 Aligned_cols=68 Identities=21% Similarity=0.186 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++..+.+|+.
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNN----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKY 166 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence 5567778888888999999999999988876544 4588888999999999999999998888666543
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.59 E-value=0.00035 Score=53.72 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=59.1
Q ss_pred HHHHHHHHHH-HHhcCCH--HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQK-AYGKGMY--GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~a-ALerGdY--~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
....+..|.. .+..|+| ..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|+++...+|+..
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE----ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 3456777888 7799999 99999999999977654 35899999999999999999999999987888754
No 88
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.57 E-value=0.00027 Score=60.37 Aligned_cols=69 Identities=13% Similarity=0.019 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...+...+..|...+.+|+|.+|+.+|+.++...+.+...-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345667788888999999999999999999887666555455788888999999999999999888766
No 89
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.56 E-value=0.0029 Score=45.32 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+...+..|...+.+|+|..|+.+|+.++...+.. ...-..+.+.++.+|...|+.++|+.+|++..
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35567778888889999999999999888765532 22235677888888999999999998888765
No 90
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.54 E-value=0.00027 Score=59.76 Aligned_cols=71 Identities=17% Similarity=0.046 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC--------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT--------FFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S--------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
.+++...+..|...+..|+|..||+.+.+++...|.+. +.-..+...++.||...|+.++||..|...+.-
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34677889999999999999999999999999888721 112338899999999999999999999999977
No 91
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.54 E-value=0.00063 Score=52.19 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+..|...+..|+|..|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF----PPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 445666777777788888888887777765543 35777777778788888888887777776666
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.54 E-value=0.0005 Score=50.78 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|.+|+++|+.++...|.+ ..+.+.++.+|...|+.++|+.+|++....+|+.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 4456677888888999999999999988876543 3588889999999999999999999888677653
No 93
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.52 E-value=0.00037 Score=64.32 Aligned_cols=68 Identities=13% Similarity=0.062 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+..|.+++...|.+ ..+.+.++.||...|+.++|+..|++....+|+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN----EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 3566678888999999999999999999987765 3589999999999999999999999988666654
No 94
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.51 E-value=0.00034 Score=58.46 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLELKPDN----QTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 3455666777777777777777777777765443 3477777777777777777777777777556554
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.51 E-value=0.00042 Score=53.29 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-YEANNRH--ADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Yqa~Gq~--EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|..|+.+|+.++...|.+ ..+.+.++.+ |...|+. ++|+.+|++....+|+.
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 3457788999999999999999999999987765 4589999999 8899998 99999999999788874
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.50 E-value=0.00029 Score=55.10 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|..|+.+|+.++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 126 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 126 DLFYMLGTVLVKLEQPKLALPYLQRAVELNEND----TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345556666666666666666666666654432 236666666666666666666666666655554
No 97
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.48 E-value=0.00047 Score=51.92 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGd---Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+-.++ ..+|+.+|++++...|.+.+ +.+.|+.+|...|+.++||..++.+....|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 445667777765555 89999999999998777766 9999999999999999999999999977776
No 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.00052 Score=55.82 Aligned_cols=55 Identities=4% Similarity=-0.074 Sum_probs=25.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLE 233 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~ 233 (287)
+...+..|+|..|+.+|+.++...|.+. .+.+.++.+|...| +.++|+.+|++..
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444444444444444444444333222 24445555555555 4555555555544
No 99
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.47 E-value=0.00034 Score=55.63 Aligned_cols=63 Identities=13% Similarity=-0.113 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
....+..|...+..|+|.+|+++|+.++...+.+ ..+.+.++.+|...|+.++|+.+|+++..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445566777777777777777777777765433 34677777777777777777777777763
No 100
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.45 E-value=0.00094 Score=57.56 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|..|+..|++++...|.+ ..+.+.|+.+|...|+.++|+.+|++.....|+..
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 4556777888899999999999999999876554 46888999999999999999999999987777764
No 101
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.45 E-value=0.00028 Score=63.95 Aligned_cols=75 Identities=8% Similarity=-0.010 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CCCchHHHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR------------PTFFGGEIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~------------~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
....+...+..|..++.+|+|.+|+..|++++...+. ..+.-..+.+.|+.+|...|+.++|+..|++
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3445666888999999999999999999999985432 2334457899999999999999999999999
Q ss_pred HHHhCCC
Q 023077 232 LESNHPS 238 (287)
Q Consensus 232 L~~~HPd 238 (287)
....+|+
T Consensus 299 al~~~p~ 305 (370)
T 1ihg_A 299 ALEIDPS 305 (370)
T ss_dssp HHTTCTT
T ss_pred HHHhCch
Confidence 9977775
No 102
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.44 E-value=0.0019 Score=51.27 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|.+|+++|+.++...+.+ ..+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ----PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3445566777777777777777777777755433 356777777777777777777777777655554
No 103
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.44 E-value=0.00054 Score=55.64 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+.+|+++...+|+
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 121 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD----IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455566777777777777777777777754433 346777777777777777777777777655554
No 104
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.44 E-value=0.00062 Score=58.67 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 3444555566666666666666666544332 246666666666666666666666666655554
No 105
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.42 E-value=0.0012 Score=55.72 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4456777888899999999999999999976654 458899999999999999999999998878887
No 106
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.41 E-value=0.00082 Score=52.55 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|..|+++|++++...+.+ ..+.+.++.+|...|+.++|+.+|++....+|+
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 157 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN----GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS----HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3456777888999999999999999999977654 458999999999999999999999999877775
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.41 E-value=0.0012 Score=47.25 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+...+..|...+..|+|.+|+++|+.++...+.. ...-..+...|+.+|...|+.++|+..|++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35667888999999999999999999999765422 33446788999999999999999999998876
No 108
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.00032 Score=62.03 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchH----------HHHHHHHHHHHHcCChHHHHHHHHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGG----------EIQIWLAMAYEANNRHADCIALYKQ 231 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~lGG----------EAQmwLAtAYqa~Gq~EkAIALCQ~ 231 (287)
...+...+..|...+.+|+|..|+..|+.++...+.+. ..|- .+.+.|+.+|...|+.++|+..|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34456677888888889999999998888888766432 1111 3778888888888888888888888
Q ss_pred HHHhCCC
Q 023077 232 LESNHPS 238 (287)
Q Consensus 232 L~~~HPd 238 (287)
....+|+
T Consensus 256 al~~~p~ 262 (338)
T 2if4_A 256 VLTEEEK 262 (338)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 8767774
No 109
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.37 E-value=0.0015 Score=52.95 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|.+|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDINPGY----VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 445667777788888888888888887765543 347778888888888888888888877767776
No 110
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.37 E-value=0.0012 Score=60.97 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHH-HHHHHHHHhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCI-ALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAI-ALCQ~L~~~H 236 (287)
+...|..|...+..|+|.+|+..|+++++..|.+.. ++..|+.+|...|+.++|. .+|+.+..+.
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~----a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA----ARLQISMCQKKAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C----HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556888999999999999999999999998776665 8999999999999998876 5677766333
No 111
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.34 E-value=0.0021 Score=49.22 Aligned_cols=89 Identities=10% Similarity=-0.052 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKN 240 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~q 240 (287)
..+...+..|...+..|+|.+|+.+|+.++...+..... -..+...|+.+|...|+.++|+..+++.. ..++++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 345667888999999999999999999999765533333 24556899999999999999999987644 3566776
Q ss_pred HHHHHHHHHHHhcC
Q 023077 241 IRRQAADLRYILQA 254 (287)
Q Consensus 241 VRqQAKqLLyILEA 254 (287)
....+...+..+..
T Consensus 185 ~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 185 AVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHhcccchhh
Confidence 66666666665543
No 112
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.33 E-value=0.00095 Score=55.72 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.|+.+|...|+.++|+.+|++....+|+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 3446788999999999999999999999976544 4699999999999999999999999998788753
No 113
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.0012 Score=53.59 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-HHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS-KNIRRQ 244 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd-~qVRqQ 244 (287)
...+..|...+..|+|.+|+.+|+.++...|.+. .+.+.|+.+|...|+.++|+..|++.....|+ +.+..+
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 309 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA----STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch----HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHH
Confidence 3567788999999999999999999999876543 59999999999999999999999999877774 444333
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.31 E-value=0.0012 Score=51.06 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCH-HHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSK-NIRR 243 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~-qVRq 243 (287)
+...+..|...+..|+|..|+..|+++++..|.+. .+.+.|+.+|...|+.++|+.. +++.++-+|+. .+..
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK----DLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 56788889999999999999999999999877654 4999999999999999877765 57666578864 4433
No 115
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.31 E-value=0.0002 Score=52.55 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=46.6
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 180 GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 180 erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..|+|.+||.+|+++++.. ...+.-..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~-~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG-LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp -----CCCHHHHHHHHSSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4699999999999999853 2234456799999999999999999999999999888874
No 116
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.29 E-value=0.00067 Score=67.95 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|.+|++.|++|++..|.+ .++.+.|+.+|...|+.++|+..|++.++-+|+.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~----~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5566677888888888888888888888765544 3478888888888888888888888877667664
No 117
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.28 E-value=0.0012 Score=51.48 Aligned_cols=64 Identities=19% Similarity=0.124 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
....+..|...+..|+|.+|+..|+.++...|.... ..++..|+.+|...|+.++|+..|+...
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQD--GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT--THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh--HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 456777888888889999999999988887665432 2578888888888999988988888765
No 118
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00052 Score=60.72 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
...+..|...+..|+|.+|+.+|+.++...|.+ ..+.+.++.||...|+.++|+..|++.....|+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN----PKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 357889999999999999999999999987654 359999999999999999999999998855665
No 119
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.26 E-value=0.00099 Score=56.97 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH---HHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK---NIRRQAADLRYI 251 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~---qVRqQAKqLLyI 251 (287)
+...+.+|++..|++.|+.++...|.+ ..+++.|+.+|...|+.++|+..|+.+...+|+. .++..--.++..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~----~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPED----AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCcc----HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 344445555555666666666655443 3599999999999999999999999999888874 455544444444
Q ss_pred h
Q 023077 252 L 252 (287)
Q Consensus 252 L 252 (287)
+
T Consensus 268 ~ 268 (287)
T 3qou_A 268 L 268 (287)
T ss_dssp H
T ss_pred c
Confidence 3
No 120
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.25 E-value=0.00072 Score=57.82 Aligned_cols=67 Identities=25% Similarity=0.242 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+...+..|...+.+|+|.+|++.|++++...|.+. .+.+.|+.+|...|+.++|+..|++....+|+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----DGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34456666777777777777777777776554432 35566666666666666666666666555554
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.22 E-value=0.00055 Score=58.55 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|.+|+..|+.++...|.+ ..+.+.++.+|...|+.++|+..|++....+|+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4567889999999999999999999999987654 3589999999999999999999999998777764
No 122
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.21 E-value=0.0051 Score=48.41 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
..+...+..|...+..|+|.+|+.+|++++.. ...+.+.-..+.+.|+.+|...|+.++|+.++++....
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34667788899999999999999999999986 23445666789999999999999999999999999843
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.20 E-value=0.0095 Score=45.49 Aligned_cols=68 Identities=10% Similarity=0.013 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP---TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~---S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+...+..|...+..|+|.+|+.+|+.++...... ...-+.+.+.|+.+|...|+.++|+.+|++..
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 446678889999999999999999999999874422 22456788999999999999999999998865
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.19 E-value=0.0031 Score=57.44 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....|..|..+-..|++.+|+.+|++++... ..+. ...+++++++++...|+.++|+++++++...+|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4467889999999999999999999998421 1022 5679999999999999999999999999999998
No 125
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0012 Score=57.03 Aligned_cols=66 Identities=9% Similarity=-0.005 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG-------------GEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG-------------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
..++.|..++.+|+|.+|++.|..++...+..+... .++...|+.+|...|+.++|+.+++++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999887665432 256788999999999999999999988743
No 126
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.17 E-value=0.0016 Score=55.31 Aligned_cols=74 Identities=8% Similarity=0.001 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--h-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--G-GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--G-GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+...+..|...+..|+|.+||.+|+.++...+.+... + ..+.+.++.+|...|+.++|+..|++...-+|+..-
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 4456778999999999999999999999987765442 1 236778899999999999999999998755665433
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.15 E-value=0.0013 Score=60.92 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|+++|+++++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH----PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5567788999999999999999999999977654 4689999999999999999999999998788864
No 128
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.15 E-value=0.0012 Score=61.65 Aligned_cols=68 Identities=13% Similarity=0.010 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|.+|++.|+++++..|.+ ..+.+.|+.+|...|+.++|+..|++..+.+|+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY----IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5667889999999999999999999999976544 4699999999999999999999999988788864
No 129
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.13 E-value=0.0081 Score=47.27 Aligned_cols=70 Identities=17% Similarity=0.062 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTII----PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~----~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
..+...+..|...+.+|+|..|+++|++++... ...++.-..+.+.|+.+|...|+.++|+.+|++....
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999999864 2335666789999999999999999999999999844
No 130
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.09 E-value=0.0013 Score=55.57 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----------ChHHHH
Q 023077 168 AQLMFELGQKAYGKGM----------YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----------RHADCI 226 (287)
Q Consensus 168 ae~~yeaG~aALerGd----------Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-----------q~EkAI 226 (287)
++..+.-|...++.|+ |.+||..|++|+++.|.... +.+.|..||...| +.++|+
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 3444445555555444 67999999999998877655 9999999999775 899999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 023077 227 ALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 227 ALCQ~L~~~HPd~qVRqQAKqL 248 (287)
..|++-++-.|+...-..|.++
T Consensus 112 ~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 112 QFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998899988777666554
No 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0027 Score=55.18 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 170 LMFELGQKAYG---KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 170 ~~yeaG~aALe---rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
..+..|...+. .|+|..|+..|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++....+|+..-...+.
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 56778888899 999999999999999976544 46899999999999999999999999998999876655544
Q ss_pred HH
Q 023077 247 DL 248 (287)
Q Consensus 247 qL 248 (287)
.+
T Consensus 490 ~~ 491 (514)
T 2gw1_A 490 TF 491 (514)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 132
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.06 E-value=0.002 Score=59.64 Aligned_cols=68 Identities=13% Similarity=-0.011 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN---NRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~---Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+..|+|.+|++.|+++++..|.+ ..+...|+.+|... |+.++|+..|++....+|+.
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 5677888999999999999999999999987654 35899999999999 99999999999999888876
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.06 E-value=0.0028 Score=54.25 Aligned_cols=71 Identities=8% Similarity=-0.026 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG--GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG--GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+||++|+.++...+.+.... ..+.+.++.+|...|+.++|+..|++.. .+|+.
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence 55677789999999999999999999998776444332 3466777888999999999999999988 77753
No 134
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.04 E-value=0.0032 Score=55.42 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
....+..|...+..|+|..|+..|+.++...|.+. .+.+.|+.+|...|+.++|+.+|++....+|+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34566677778888888888888888887665543 47788888888888888888888887767765
No 135
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.03 E-value=0.0018 Score=64.98 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+.+|+|.+|++.|+++++..|.+ ..+.+.|+.+|...|+.++|+..|++..+..|+.
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 5677888999999999999999999999976654 4589999999999999999999999988788863
No 136
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.03 E-value=0.0024 Score=54.60 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+..|...+.+|+|.+|++.|+.++...|.+ ..+...|+.+|...|+.++|+.+|++....+|+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 44556666777777777777777777654433 236667777777777777777777776655554
No 137
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.02 E-value=0.0025 Score=54.08 Aligned_cols=72 Identities=19% Similarity=0.173 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGK-GMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALer-GdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+......|.....+ |+|.+||.+|++++...+..... -..+...++.+|...|+.++|+..|++....+|+.
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45566778877786 99999999999999987744322 24678899999999999999999999999767664
No 138
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.01 E-value=0.0036 Score=50.37 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR----PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~----~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
.+...+..|...+.+|+|.+|+.+|+.++..... +.+.-..+...|+.+|...|+.++|+.+|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556788899999999999999999999986432 35556789999999999999999999999998843
No 139
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=96.97 E-value=0.0045 Score=49.48 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
.+...+..|...+..|+|.+|+.+|+.++...+.. ...-..+.+.++.+|...|+.++|+.++++...
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567888899999999999999999998766533 233356788899999999999999999988763
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.97 E-value=0.0047 Score=53.33 Aligned_cols=62 Identities=8% Similarity=-0.056 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
..+..|...+..|+|.+|++.|++ + ...++.+.++.+|...|+.++|+..++.+...+|+.-
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 164 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH
Confidence 456666666777777777776665 1 2235666677777777777777777777666666643
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.97 E-value=0.00039 Score=64.92 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.+...+..|..++.+|+|.+|+++|+++++..|.+ ..+...|+.+|...|+.++|+..|++....+|+.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 34556677888999999999999999999986655 5699999999999999999999999999777763
No 142
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=96.96 E-value=0.0048 Score=52.62 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+..|...+.+|+|.+|+.+|+.++...+.... .-..+...|+.+|...|+.++|+.+|++..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777777777777777777765553222 224566667777777777777777776655
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.93 E-value=0.0084 Score=50.43 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHH-HHHHHH---HHHhCCCHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADC-IALYKQ---LESNHPSKNIR 242 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkA-IALCQ~---L~~~HPd~qVR 242 (287)
...+..|...+.+|+|.+|+.+|++++...+. ....-+.+.+.++.+|...|+.++| +..|++ +.+...++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence 57788999999999999999999999976542 2233378899999999999999999 555554 44567777776
Q ss_pred HHHHHHHHHhc
Q 023077 243 RQAADLRYILQ 253 (287)
Q Consensus 243 qQAKqLLyILE 253 (287)
+.-..++.-||
T Consensus 277 ~~~~~~~~~~~ 287 (293)
T 2qfc_A 277 EALVNKISRLE 287 (293)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 144
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0052 Score=51.94 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077 167 TAQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (287)
Q Consensus 167 ~ae~~yeaG~aALerG---dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (287)
..+..|+-|....... ++.++|.+|+.++....+. .--...++|+.+|...|+.++|+..|+.+....|+-.-.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3567888888888877 8889999999999966221 1236999999999999999999999999998889765444
Q ss_pred HHHHH
Q 023077 244 QAADL 248 (287)
Q Consensus 244 QAKqL 248 (287)
..+++
T Consensus 109 ~Lk~~ 113 (152)
T 1pc2_A 109 ELERL 113 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 145
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.009 Score=48.05 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
.+...+..|...+..|+|..|+.+|+.++.... .+.+.-..+.+.|+.+|...|+.++|+.+|++..+.
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 455678889999999999999999999998642 334556789999999999999999999999998844
No 146
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.88 E-value=0.014 Score=47.70 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+. .|+|.+|+.+|++++... -..+++.|+.+|.. .|+.++|+.+|++.. ...++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~~~ 110 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLKYA 110 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcCCc
Confidence 4556667777777 788888888888877642 24677788888887 888888888888777 44455
Q ss_pred HHHHH
Q 023077 240 NIRRQ 244 (287)
Q Consensus 240 qVRqQ 244 (287)
...-.
T Consensus 111 ~a~~~ 115 (273)
T 1ouv_A 111 EGCAS 115 (273)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 44433
No 147
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.87 E-value=0.0017 Score=63.09 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..+..|...+..|+|.+|++.|+++++..|.+. .+.+.|+.+|...|+.++ +..|++..+..|+
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL----APKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS----HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 444455555555555555555555555444332 245555555555555555 5555555444443
No 148
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.012 Score=49.19 Aligned_cols=66 Identities=23% Similarity=0.203 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+...+..|...+..|+|..|+.+|+.++...+.. ...-..+...|+.+|...|+.++|+.+|++..
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5567788999999999999999999999876533 33335788899999999999999999999855
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.86 E-value=0.0048 Score=51.96 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI---IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~---~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+...+..|...+.+|+|..|+.+|++++.. .+........+.+.++.+|...|+.++|+.+|++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 456778899999999999999999999943 443333334799999999999999999999999876
No 150
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.85 E-value=0.0042 Score=55.77 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+|.+|++.|+.++...|.+ ..+...|+.+|...|+.++|+.+|+++.+.+|+.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 4456777888899999999999999999976544 3699999999999999999999999999888875
No 151
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.00024 Score=49.64 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc--hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF--GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l--GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
....+..|...+..|+|.+|++.|+.++...|.+... ...+.+.++.+|...|+.+.|+..++.+.
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4567889999999999999999999999987765221 26789999999999999998887766554
No 152
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.81 E-value=0.0076 Score=52.29 Aligned_cols=70 Identities=9% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR-PTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~-~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
..+...+..|...+.+|+|..|+++|++++..... ..+....+.+.|+.+|...|+.++|+.+|++...-
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999985442 34445889999999999999999999999987744
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.81 E-value=0.006 Score=51.34 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNR-HADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~ 233 (287)
..+...+..|...+.+|+|.+|+.++++++...+.. ...-+.+.+.++.+|...|+ .++|+..|++-.
T Consensus 194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 446678999999999999999999999999876533 33347899999999999996 499999998765
No 154
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.78 E-value=0.004 Score=57.11 Aligned_cols=68 Identities=3% Similarity=-0.026 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGKGM-YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALerGd-Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+..|+ |.+||..|++++...|.+. ++...++.+|...|+.++|+..|++.+...|+.
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 5566777888888896 9999999999998776654 488889999999999999999999888777754
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.78 E-value=0.0023 Score=54.08 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCCCchHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI-------IPRPTFFGGEIQ----IWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~-------~~~~S~lGGEAQ----mwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
+...++.|......|+|..||..++.+++. .|.+ ..+. +-++.||.+.|+.++|+..|++.+.-.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~----~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE----GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch----HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 336889999999999999999999999998 6643 4466 999999999999999999999988443
Q ss_pred C
Q 023077 237 P 237 (287)
Q Consensus 237 P 237 (287)
|
T Consensus 133 p 133 (159)
T 2hr2_A 133 E 133 (159)
T ss_dssp H
T ss_pred C
Confidence 3
No 156
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.70 E-value=0.014 Score=50.40 Aligned_cols=68 Identities=7% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-C-CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP-T-FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~-S-~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+...+..|...+.+|+|..|+.+|++++...... . +.-..+.+.|+.+|...|+.++|+.+|++..
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345678889999999999999999999999864422 2 5557899999999999999999999998866
No 157
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.67 E-value=0.017 Score=55.48 Aligned_cols=68 Identities=6% Similarity=-0.128 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.++......|.....+|+|.+|+.+++++++. .+++.+.-+....-|+.+|..+|+.++|+.+|++-.
T Consensus 349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46778888899999999999999999999854 568888888999999999999999999999998754
No 158
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.62 E-value=0.0084 Score=51.73 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHAD-CIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~Ek-AIALCQ~L~~~HPd~ 239 (287)
..+..|...+..|+|.+|++.|+.++...|.+. .+...|+.+|...|+..+ |..+++++...+|+.
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~----~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP----ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 344556666666666666666666666544332 256666666666666654 345655555556543
No 159
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.61 E-value=0.022 Score=52.54 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------CCCHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN-------HPSKNIRRQA 245 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~-------HPd~qVRqQA 245 (287)
..+...+..|+|.+||..|..++...|.+-. +...|..||...|+..+|+..|+.+... -|.++++.--
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456678999999999999999998877655 8899999999999999999999998732 4889998888
Q ss_pred HHHHHH
Q 023077 246 ADLRYI 251 (287)
Q Consensus 246 KqLLyI 251 (287)
+++|..
T Consensus 252 ~~il~~ 257 (388)
T 2ff4_A 252 ERILRQ 257 (388)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 877653
No 160
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.51 E-value=0.013 Score=54.10 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYGK--------GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALer--------GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
....+..|...+.. |+|.+|+..|++++...|. .+.-..+.+.|+.+|...|+.++|+..|++.....|+.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 44556677778887 9999999999999997652 11335699999999999999999999999988778874
Q ss_pred H
Q 023077 240 N 240 (287)
Q Consensus 240 q 240 (287)
.
T Consensus 292 ~ 292 (474)
T 4abn_A 292 P 292 (474)
T ss_dssp H
T ss_pred H
Confidence 4
No 161
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.50 E-value=0.0059 Score=56.03 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..|...+..|+|..||..|++++...|.+.. +.+.++.+|...|+.++|+..|++.+..+|+..
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~----a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH----AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 556788899999999999999999999998877654 999999999999999999999999998888643
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.50 E-value=0.013 Score=56.27 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP----RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~----~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+..++..++.+..+..+|+|.+|+.+++.+++... .+.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus 306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44455677777788899999999999999996543 5666677899999999999999999999998865
No 163
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=96.48 E-value=0.0099 Score=53.38 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
..+..|...+..|+|.+|+++|+.++...|.+ ..+...|+.+|...|+.++|+.+|++....+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF----GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445566666677777777777666644432 23566666666666666666666666554444
No 164
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.47 E-value=0.034 Score=45.35 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023077 166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP 237 (287)
Q Consensus 166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP 237 (287)
......+..|...+. .|+|.+|+.+|++++... ...+.+.|+.+|.. .|+.++|+.+|++.. ...
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~ 144 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN 144 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC
Confidence 346678888999999 999999999999999852 35799999999999 999999999999999 454
Q ss_pred CHHHHH
Q 023077 238 SKNIRR 243 (287)
Q Consensus 238 d~qVRq 243 (287)
++...-
T Consensus 145 ~~~a~~ 150 (273)
T 1ouv_A 145 DGDGCT 150 (273)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 554433
No 165
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.46 E-value=0.023 Score=48.37 Aligned_cols=69 Identities=14% Similarity=-0.005 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP----TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~----S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
...+..|...+.+|+|.+|+++++.++...+.. ++....+...|+.+|...|+.++|+.+|++.....|
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 345667778888888888888888887655421 234456677788888888888888888887664444
No 166
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.45 E-value=0.008 Score=51.38 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
...+.|......|+|.+|+.+|++++........ .-..+...|+.+|.. |+.++|+..|++-.
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 3334444444445555555555555544322111 112344444555544 55555555554443
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.36 E-value=0.01 Score=49.99 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+......|...+..|+|.+|+.+|++++.... .+.+.-..+.+.|+.+|...|+.++|+..|++..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567789999999999999999999996433 3455556788999999999999999999998766
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.35 E-value=0.0074 Score=52.34 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP--RPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~--~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
..+...+..|...+..|+|.+|+++|++++...+ .+...-+.+...|+.+|...|+.++|+..|++...
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466777899999999999999999999998655 23344567888999999999999999999999885
No 169
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.32 E-value=0.0048 Score=59.91 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.+..|...+..|+|.+ ++.|+++++..|.+. .+.+.|+.+|...|+.++|+..|++.....|+
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVI----SAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHhCCchH----HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 3445555666666666 666666666544432 25666666666666666666666665544554
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.29 E-value=0.021 Score=46.48 Aligned_cols=68 Identities=18% Similarity=0.104 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN----RHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G----q~EkAIALCQ~L~~~HPd~qV 241 (287)
.-+...+..|...+..|+|.+|+.+|++++.. . ...+++.|+..|.. | +.++|+.+|++.. ...++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~-~~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV-EAGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH-HTTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH-HCCCHHH
Confidence 34566777888888888888888888888763 1 23678888888887 6 7888888888877 4555543
No 171
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.22 E-value=0.067 Score=45.52 Aligned_cols=65 Identities=20% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc-hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF-GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l-GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+..+-.|..++.+|+|.+|+.+++.++...+...+. -+.+...++.+|...|+.++|+.+|++..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566777777888888888888877766543321 23456677777778888888887777654
No 172
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.22 E-value=0.017 Score=54.71 Aligned_cols=68 Identities=10% Similarity=0.033 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.++......|.....+|+|.+|+.+++++++. .+++.+.-+...+-|+.+|..+|+.++|+.+|++-.
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35677788899999999999999999999854 668888888999999999999999999999998754
No 173
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.22 E-value=0.01 Score=42.74 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 186 RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 186 qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.|++.|+.++...|.+ ..+.+.|+.+|...|+.++|+..|++.+..+|+.
T Consensus 3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 5889999999866644 3599999999999999999999999999788864
No 174
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.21 E-value=0.011 Score=50.96 Aligned_cols=67 Identities=12% Similarity=0.138 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---CchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---FFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+...+..|...+..|+|..|+.++++++...+... +.-+.+...|+.+|...|+.++|+..|++..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456667777777888888888888888877655442 2334677778888888888888888877665
No 175
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.16 E-value=0.017 Score=54.14 Aligned_cols=65 Identities=5% Similarity=-0.028 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+..+.....+..+|+|.+|+++++.+++. ..++.+.-..+...|+.+|...|+.++|+.+|++..
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34556666788999999999999999965 345666678899999999999999999999999876
No 176
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.11 E-value=0.031 Score=52.92 Aligned_cols=66 Identities=8% Similarity=-0.088 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
+...++.+..+-..|+|.+|+.+++++++. ..++.+.-..+...|+.+|..+|+.++|+.+|++..
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 367 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII 367 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 444566677777889999999999999975 345666667889999999999999999999999876
No 177
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.10 E-value=0.045 Score=42.25 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCC
Q 023077 166 ATAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHP 237 (287)
Q Consensus 166 e~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HP 237 (287)
.-+...+..|..-+. .++|.+|+.+|+++++. . ...+++.|+..|.. .++.++|+.+|++-. ...
T Consensus 55 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g 127 (138)
T 1klx_A 55 NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL---N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC-RLG 127 (138)
T ss_dssp TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT
T ss_pred CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH-HCC
Confidence 456778888988888 89999999999999984 2 24799999999999 999999999999998 566
Q ss_pred CHHH
Q 023077 238 SKNI 241 (287)
Q Consensus 238 d~qV 241 (287)
++.-
T Consensus 128 ~~~A 131 (138)
T 1klx_A 128 SEDA 131 (138)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6643
No 178
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.07 E-value=0.02 Score=53.71 Aligned_cols=68 Identities=6% Similarity=-0.029 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.++......|.....+|+|.+|+.++++++.. .+++.+.-+...+-|+..|..+|+.++|+.+|++-.
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35677788888999999999999999998854 678899889999999999999999999999998654
No 179
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.86 E-value=0.021 Score=49.46 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CCCC----c--------------hHHHHHHHHHHHHHcCChHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP---RPTF----F--------------GGEIQIWLAMAYEANNRHADCI 226 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~---~~S~----l--------------GGEAQmwLAtAYqa~Gq~EkAI 226 (287)
++..+--|..-|.+|+|.+|..+|..|+.... .+.. . -.++.+.++.||...|+.++||
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai 142 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI 142 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence 56678889999999999999999999864433 1111 1 1279999999999999999999
Q ss_pred HHHHHHHHhCCCHHH
Q 023077 227 ALYKQLESNHPSKNI 241 (287)
Q Consensus 227 ALCQ~L~~~HPd~qV 241 (287)
++-+.|-.+...|.|
T Consensus 143 ~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 143 AILDGIPSRQRTPKI 157 (167)
T ss_dssp HHHHTSCGGGCCHHH
T ss_pred HHHhcCCchhcCHHH
Confidence 998777545555544
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.80 E-value=0.016 Score=52.85 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
..|..|..+++.|+|..|+.+|+++....+ ......+.++|.+||...|+.++|+..|++.. .-|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~ 202 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEAN-DSPA 202 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCC
Confidence 358888999999999999999998766331 11345799999999999999999999999998 5554
No 181
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.78 E-value=0.067 Score=49.38 Aligned_cols=65 Identities=9% Similarity=0.019 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
.+-.|...+..|+|.+|+++|.+++...+ +....+++..+|..|-..|+.+.|.++++.+.+.+|
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~ 167 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE 167 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 45678888889999999999999887444 345678999999999999999999999999997888
No 182
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.75 E-value=0.027 Score=37.76 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G 220 (287)
....+..|...+..|+|.+|+.+|+.++...|.+ ..+...|+.+|...|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcC
Confidence 3456788999999999999999999999977654 358889999988765
No 183
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.71 E-value=0.091 Score=45.77 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------------------------------
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------------------------------ 205 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------------------------------ 205 (287)
....+..|...+..|+|..|+..|++++...|.+....
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456678888899999999999999888777653321
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 206 -------GEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 206 -------GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
..+.+.|+.+|...|+.++|+..|++..+..|++.....
T Consensus 327 ~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~ 372 (472)
T 4g1t_A 327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372 (472)
T ss_dssp HHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHH
Confidence 112356788999999999999999998867888766543
No 184
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=95.67 E-value=0.057 Score=49.29 Aligned_cols=65 Identities=9% Similarity=-0.041 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
+..+. ..++|++.+|...|+.+++..|.+. .+++.++..+...|+.++|+.+|+..+..||+..+
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~l 81 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQFPSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDL 81 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHH
Confidence 33344 3678999999999999999776553 58888999999999999999999999988897654
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.62 E-value=0.11 Score=42.07 Aligned_cols=71 Identities=11% Similarity=0.135 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHhCC
Q 023077 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-----RHADCIALYKQLESNHP 237 (287)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-G-----q~EkAIALCQ~L~~~HP 237 (287)
+...+..|..-+. .++|.+|+.+|++++.. +.+. .+++.|+.+|... | +.++|+.+|++-. ...
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~----~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~-~~g 198 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG----YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC-LEG 198 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT----HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH----HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH-HcC
Confidence 5567777877777 78888888888888875 2222 3788888888643 4 7888888888887 455
Q ss_pred CHHHHHH
Q 023077 238 SKNIRRQ 244 (287)
Q Consensus 238 d~qVRqQ 244 (287)
++.-...
T Consensus 199 ~~~A~~~ 205 (212)
T 3rjv_A 199 FDTGCEE 205 (212)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5554443
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.046 Score=47.10 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.+...+..|..-+++|+|.+|+.+|..++..... ..+.-.++.+.++.+|...|+.++|+.+|++..
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3566788899999999999999999999866553 344556889999999999999999999998764
No 187
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.48 E-value=0.066 Score=45.41 Aligned_cols=57 Identities=9% Similarity=0.000 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
-|......|+|..|++.|+.++...|.+.. .+.+.++..+...|+.++|+.+|++..
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344444455555555555555553332211 145555555555555555555555555
No 188
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.34 E-value=0.094 Score=44.46 Aligned_cols=62 Identities=15% Similarity=-0.038 Sum_probs=31.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhC--CCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTII--PRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~--~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
|..-...|++..|+.+|+.++... ++... ..+...++..+...|+.++|+.+++...+.+|+
T Consensus 210 ~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~--~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKS--GEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhccCCCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 344445566666666666665532 21111 234444455555556666666666655555553
No 189
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.23 E-value=0.067 Score=50.93 Aligned_cols=74 Identities=12% Similarity=0.055 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
...|..++-+|++..|+.+|++|+... ++ -.+.+.+..+|.-.|+.++|++.|.+-..-.|...+-.|++.+.+
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln--~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLE--MS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC--CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 344666778899999999999999985 23 247789999999999999999999887779999999999988743
No 190
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.11 E-value=0.36 Score=39.67 Aligned_cols=81 Identities=16% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGR---AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~q---AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
.+..|+-|-......+-.. +|.+|+..+....+. .--+..++||.+|.+.|+..+|...|..|....|+- .|
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~--~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n---~Q 109 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN---NQ 109 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HH
Confidence 5667777777777776666 999999998854221 223689999999999999999999999999888865 35
Q ss_pred HHHHHHHhc
Q 023077 245 AADLRYILQ 253 (287)
Q Consensus 245 AKqLLyILE 253 (287)
|+.|...++
T Consensus 110 A~~Lk~~i~ 118 (126)
T 1nzn_A 110 AKELERLID 118 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 191
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.96 E-value=0.18 Score=45.52 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 023077 167 TAQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 167 ~ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd 238 (287)
.....+..|..-+. .++|.+|+.+|+++++.. -..++..|+.+|.. .|+.++|+.+|++.....|+
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 35567777888788 899999999999998842 15799999999998 89999999999999877765
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.83 E-value=0.1 Score=38.99 Aligned_cols=48 Identities=10% Similarity=-0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY 216 (287)
....+-.|..+|++|+|.+||.+++.++...|. ++--..++-.+..|.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I~~A~ 90 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESINKAK 90 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHHHHHH
Confidence 556778899999999999999999999998888 665555555555543
No 193
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.83 E-value=0.016 Score=40.30 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
..+..|...+..|+|.+|++.|+.++...|.+.. +..+ +...+|+..|+++...+|
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~--------~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA----LQAR--------KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHH--------HHHHHHHHHHCCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHH--------HHHHHHHHHHHHHhccCc
Confidence 6788899999999999999999999998876655 3322 666777777776654444
No 194
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.59 E-value=0.17 Score=44.00 Aligned_cols=75 Identities=7% Similarity=-0.020 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHH-HHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLA-MAYEANNRHADCIALYKQLESNHPSKNIRRQAA 246 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLA-tAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAK 246 (287)
.+..|...+..|+|.+|++.|++++...+.+... ..+.+.+. .++...|+.++||..|++-.+-.|+..-+..+.
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~ 412 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAK-QLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK 412 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 3567888999999999999999999865443221 12222232 345578999999999999886777765544433
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=94.41 E-value=0.36 Score=43.55 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCH
Q 023077 168 AQLMFELGQKAYG----KGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 168 ae~~yeaG~aALe----rGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
+...+..|...+. .++|.+|+.+|++++.. . ...+++.|+..|.. .++.++|+.+|++.. ...++
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~ 147 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK---G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRD 147 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCH
Confidence 4455666666666 66666666666666652 1 12466666666666 666666666666666 33344
Q ss_pred H
Q 023077 240 N 240 (287)
Q Consensus 240 q 240 (287)
.
T Consensus 148 ~ 148 (490)
T 2xm6_A 148 S 148 (490)
T ss_dssp H
T ss_pred H
Confidence 3
No 196
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.68 E-value=0.12 Score=43.35 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKG---MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerG---dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
.+..|+-+-...... +...+|.+|+..+...+... -+-.++||.+|.+.|+.++|...|..|....|+-. |
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~---Q 113 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---Q 113 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH---H
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH---H
Confidence 455666666655544 55689999999998654333 37899999999999999999999999997777753 5
Q ss_pred HHHHHHHhc
Q 023077 245 AADLRYILQ 253 (287)
Q Consensus 245 AKqLLyILE 253 (287)
|+.|...++
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
No 197
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=93.24 E-value=0.25 Score=45.03 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=45.3
Q ss_pred cCCHH-------HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 181 KGMYG-------RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 181 rGdY~-------qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
.|++. .|+..|+.+++...+.+ ..+.+.++..|...|+.++|+.+|++.....|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 353 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI 353 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence 79987 89999999997333332 468899999999999999999999999965664
No 198
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.98 E-value=0.32 Score=41.22 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHH
Q 023077 167 TAQLMFELGQKAYGKGM---YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRR 243 (287)
Q Consensus 167 ~ae~~yeaG~aALerGd---Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRq 243 (287)
+.+..|+-+-......+ -..+|.+|+..+...+...+ +-.++||.+|.+.|+..+|..+|..|....|+- +
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~R---dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n---~ 111 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRR---ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN---K 111 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHH---HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC---H
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchh---HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---H
Confidence 45566777766666554 45799999999986665544 689999999999999999999999999888875 3
Q ss_pred HHHHHHHHhc
Q 023077 244 QAADLRYILQ 253 (287)
Q Consensus 244 QAKqLLyILE 253 (287)
||+.|...++
T Consensus 112 QA~~Lk~~Ie 121 (144)
T 1y8m_A 112 QVGALKSMVE 121 (144)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666655554
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.95 E-value=0.023 Score=52.00 Aligned_cols=52 Identities=17% Similarity=0.076 Sum_probs=13.0
Q ss_pred HHHHHhcCCH---HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 023077 175 GQKAYGKGMY---GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-----RHADCIALYKQLE 233 (287)
Q Consensus 175 G~aALerGdY---~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-----q~EkAIALCQ~L~ 233 (287)
|...+..|++ .+|+++|++++.. . ..+++.|+.+|...| +.++|+.+|++..
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~----~---~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa 101 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT----S---PRAQARLGRLLAAKPGATEAEHHEAESLLKKAF 101 (452)
T ss_dssp C-----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC----C---HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHH
Confidence 3333444444 4555555555432 1 124555555444444 4455555555554
No 200
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.40 E-value=0.3 Score=48.69 Aligned_cols=73 Identities=18% Similarity=0.055 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
....+ .||..|+|..|..+|..... ....-.+.++|+++|+.+.|+.++|..+|+.+. ++ ..---.-|.+.|.
T Consensus 289 e~~~r-~Alr~~d~~~a~~~~~~l~~----~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~-~~fYg~lAa~~Lg 361 (618)
T 1qsa_A 289 ERRVR-MALGTGDRRGLNTWLARLPM----EAKEKDEWRYWQADLLLERGREAEAKEILHQLM-QQ-RGFYPMVAAQRIG 361 (618)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHSCT----TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TS-CSHHHHHHHHHTT
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHccc----cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cC-CChHHHHHHHHcC
Confidence 35555 58899999999999987443 222346799999999999999999999999999 54 4444444555443
No 201
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.14 E-value=1.2 Score=41.07 Aligned_cols=74 Identities=23% Similarity=0.131 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCch------------------HHHHHHHHHHHHHcCChHHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFG------------------GEIQIWLAMAYEANNRHADCIAL 228 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lG------------------GEAQmwLAtAYqa~Gq~EkAIAL 228 (287)
.++..+..|..+...|+...|++.|+.|+......--.| ..+...++.++.+.|+.++|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456678888889999999999999999998875432111 14555678899999999999999
Q ss_pred HHHHHHhCCCHH
Q 023077 229 YKQLESNHPSKN 240 (287)
Q Consensus 229 CQ~L~~~HPd~q 240 (287)
|+.+...||-.+
T Consensus 194 l~~~~~~~P~~E 205 (388)
T 2ff4_A 194 LEALTFEHPYRE 205 (388)
T ss_dssp HHHHHHHSTTCH
T ss_pred HHHHHHhCCCCH
Confidence 999998999655
No 202
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.99 E-value=0.4 Score=41.40 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC-----chHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF-----FGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~-----lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
..++..+.++++|.|+.|+-+...+++..+.+.. .--++++|+|.||-+.|+.-+|...|++-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4678899999999999999999988876543322 23479999999999999999999999883
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.38 E-value=1.9 Score=32.99 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 174 LGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEA----NNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 174 aG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa----~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
.|..-+..+.+.+|+.+|++++.. . ...+++.|+..|.. .++.++|+.+|++-. ...++...-+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~---g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~ 98 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL---N---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLI 98 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC---C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHH
Confidence 666667778899999999999985 2 24799999999998 899999999999998 5666654433
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.13 E-value=0.47 Score=33.90 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCH
Q 023077 206 GEIQIWLAMAYEANNRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 206 GEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+.+.|+.+|...|+.++|+..|++.+...|+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 40 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDY 40 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999888863
No 205
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=88.39 E-value=1.4 Score=39.70 Aligned_cols=69 Identities=12% Similarity=0.066 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCHH
Q 023077 168 AQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN--RHADCIALYKQLESNHPSKN 240 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G--q~EkAIALCQ~L~~~HPd~q 240 (287)
+...+..-.+.+.+|.|. +|+...+.++...|.+.. +...-..++...| +.++|+.+|..++..+|..-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH
Confidence 445566666778889995 899999999998888776 8888899999999 99999999999998888753
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=87.90 E-value=2 Score=39.60 Aligned_cols=88 Identities=9% Similarity=-0.046 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHH
Q 023077 162 AERRATAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYK 230 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ 230 (287)
+.+...+......-......|.|+ +|+++++.++...|.+.. |...--.+....|+ .++++.+|.
T Consensus 23 ~~ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~ 98 (331)
T 3dss_A 23 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLE 98 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence 344455666666666777899999 799999999997776655 66666666666665 589999999
Q ss_pred HHHHhCCC-HHHHHHHHHHHHHhc
Q 023077 231 QLESNHPS-KNIRRQAADLRYILQ 253 (287)
Q Consensus 231 ~L~~~HPd-~qVRqQAKqLLyILE 253 (287)
.+...||. +++=..=.-+|..|.
T Consensus 99 ~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 99 SCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHhccC
Confidence 99988884 333222223455444
No 207
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=87.87 E-value=1.8 Score=39.78 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 023077 175 GQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale 196 (287)
++..+..|+++.|.+.|+.+.+
T Consensus 143 vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 143 IEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 3444455555555555554433
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=87.63 E-value=2.6 Score=38.48 Aligned_cols=65 Identities=11% Similarity=-0.057 Sum_probs=44.3
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 172 FELGQKAYGK----GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMA-Y--EANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 172 yeaG~aALer----GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtA-Y--qa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
+..|...... ++|.+|+.+|++++ + .. ..+++.|+.. | ...|+.++|+.+|++.. ...++...-+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~ 288 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---P-GY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELL 288 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---G-GS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---C-CC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHH
Confidence 5555544322 58888888888877 2 22 2588888888 5 57888888888888887 5555554443
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=87.06 E-value=0.37 Score=40.55 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCHH
Q 023077 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----------ADCIALYKQLESNHPSKN 240 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~----------EkAIALCQ~L~~~HPd~q 240 (287)
++|.+|++.++.+++..|.+. ++.+.+..+|...|+. ++||+.|++-++-.|+.-
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 568999999999999777654 4888888899998875 599999999998888754
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.91 E-value=6.3 Score=36.81 Aligned_cols=68 Identities=16% Similarity=0.026 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCC----H-----HHHHHHHHHHHH
Q 023077 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-NRHADCIALYKQLESNHPS----K-----NIRRQAADLRYI 251 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-Gq~EkAIALCQ~L~~~HPd----~-----qVRqQAKqLLyI 251 (287)
|+...|.++|++|+++.|.... .+.+..+..|... |+.+.|.+++++-..--|. . --|++|+.||..
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~i---d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~~ 294 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDP---DHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKAH 294 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCS---HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999998876544 4899999999885 9999999999998833333 2 367888888865
Q ss_pred h
Q 023077 252 L 252 (287)
Q Consensus 252 L 252 (287)
+
T Consensus 295 ~ 295 (301)
T 3u64_A 295 V 295 (301)
T ss_dssp H
T ss_pred h
Confidence 4
No 211
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=86.84 E-value=1.2 Score=44.47 Aligned_cols=54 Identities=20% Similarity=0.267 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA 225 (287)
+...++.|+.||..|+|+-|.+++..++...|.+. +|+.++|.||...|...+.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~----~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR----AARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHhccC
Confidence 67899999999999999999999999998777665 4999999999998865543
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=85.62 E-value=2 Score=48.05 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 156 KVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 156 ~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
+.|.+-+++......-++-|.+-+..|+|.+||..++++ +. ....+-++.+|+..|+.++||..|+.-.+.
T Consensus 1093 drAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD---~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1093 DRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346666777777788889999999999999999999885 22 246677899999999999999999876544
Q ss_pred CCCH
Q 023077 236 HPSK 239 (287)
Q Consensus 236 HPd~ 239 (287)
-|++
T Consensus 1164 ~~e~ 1167 (1630)
T 1xi4_A 1164 ARES 1167 (1630)
T ss_pred cccc
Confidence 4444
No 213
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.63 E-value=3.3 Score=34.19 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
....+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 114 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLA------YP---DLEPWLALCEYRLGLGSALESRLNRLA-RSQDPRIQTFVNGMREQL 114 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSC------CG---GGHHHHHHHHHHHTCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 345688999999999999977 33 267799999999999999999998898 899999999998887654
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.52 E-value=0.95 Score=42.43 Aligned_cols=80 Identities=14% Similarity=-0.012 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC--------CCC-CCchHHHHH--------HHHHHHHHcCChHHHHHHHHHHH-
Q 023077 172 FELGQKAYGKGMYGRAIEFLEGALTII--------PRP-TFFGGEIQI--------WLAMAYEANNRHADCIALYKQLE- 233 (287)
Q Consensus 172 yeaG~aALerGdY~qAIelLE~Ale~~--------~~~-S~lGGEAQm--------wLAtAYqa~Gq~EkAIALCQ~L~- 233 (287)
-+.|..|+++|++..|+..|..+-... ..+ ..+.--+.+ .-..+|...|+.++|+.+|+.+-
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 466888888888888888877641110 000 000000111 12446777888888888887653
Q ss_pred --------HhCCCHH------HHHHHHHHHHH
Q 023077 234 --------SNHPSKN------IRRQAADLRYI 251 (287)
Q Consensus 234 --------~~HPd~q------VRqQAKqLLyI 251 (287)
++|..++ +++||+.|...
T Consensus 765 ~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~ 796 (814)
T 3mkq_A 765 FSEAAFLGSTYGLGDNEVNDIVTKWKENLILN 796 (814)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 2344344 46777776543
No 215
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=82.35 E-value=5.5 Score=32.19 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=43.5
Q ss_pred cccccCCCCCCccc--CCCCCCCcccccHHHHHHHHHHHH--HHHHHHHHHHHH-HhhhhhccCcchhhhhhhHHHHHHH
Q 023077 75 VNAVDFDAGSSDEE--NGNGNGEKEEYDWEKEMRRRVKEI--EEMRELEKKAEE-LQSKAEEDDSESEAKEETEEEKRMR 149 (287)
Q Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r 149 (287)
.||.||+.-+.+|= --|--.|.++.|+..|+.+|++.. ++.+..-++..+ +++-++-=. -+.=.++|.-
T Consensus 6 ~~a~DFSk~Sd~ELl~mAG~V~p~~~~dY~mEv~KR~~~M~~k~~k~F~~~~~~~~~kN~~kMS------~ke~~~~r~a 79 (100)
T 2xrh_A 6 TMAKDFSKTSDEDLAKMAGVVAPQDIVDYTKELKKRMEKMPEDKRKAFHKQLHEYATKNTDKMT------VADFEARQKA 79 (100)
T ss_dssp CCCCSSTTSCHHHHHHTTTTSCGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTSC------HHHHHHHHHH
T ss_pred hcccchhhcCHHHHHHHHCcCChhhhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHH
Confidence 58999985544443 345556778899999999999864 333333333322 222222222 2222455556
Q ss_pred HHHHHHH
Q 023077 150 VRRELEK 156 (287)
Q Consensus 150 v~~~L~~ 156 (287)
|+..|++
T Consensus 80 I~eal~k 86 (100)
T 2xrh_A 80 VKEALKK 86 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 216
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.23 E-value=3.2 Score=34.29 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
....+.||+|..|..++++.| ++ -+-=|+|.|--..|-..++-..--.|. ...+|+.++.|..+...+
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c------~p---dlepw~ALce~rlGl~s~le~rL~~la-~sg~p~~q~Fa~g~req~ 113 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNP------WP---ALEPWFALCEWHLGLGAALDRRLAGLG-GSSDPALADFAAGMRAQV 113 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCC------CG---GGHHHHHHHHHHTTCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCC------Cc---hHHHHHHHHHHhcccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHh
Confidence 345688999999999999976 33 267799999999999999999998998 899999999998887654
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=81.22 E-value=2.8 Score=40.52 Aligned_cols=69 Identities=9% Similarity=-0.038 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYG-RAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR----------HADCIALYKQLESN 235 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~-qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq----------~EkAIALCQ~L~~~ 235 (287)
.+...+....+....|.|. +|++.++.++...|.+.. |..+-..++...|+ .++|+.+|..++..
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~ 102 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 102 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh
Confidence 3444445555566778776 669999999997777665 88888899999999 89999999999988
Q ss_pred CCCH
Q 023077 236 HPSK 239 (287)
Q Consensus 236 HPd~ 239 (287)
+|..
T Consensus 103 ~pK~ 106 (567)
T 1dce_A 103 NPKS 106 (567)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8864
No 218
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=80.31 E-value=6.9 Score=33.34 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHH-HHHH--HHHcCChHHHHHHHHHHHH---hCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIW-LAMA--YEANNRHADCIALYKQLES---NHPS 238 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmw-LAtA--Yqa~Gq~EkAIALCQ~L~~---~HPd 238 (287)
+....|..|+..|..|+|-.|=+.||.+....+.. .+.--+..|+ +|.| ....|+..-|..++++-.. .+|.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~ 110 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPN 110 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCT
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 34567999999999999999999999999877655 3333455555 5555 4567999999999986542 3443
Q ss_pred H-------HHHHHHHHHHH
Q 023077 239 K-------NIRRQAADLRY 250 (287)
Q Consensus 239 ~-------qVRqQAKqLLy 250 (287)
. .++.+++.++.
T Consensus 111 ~~~GIDv~~L~~~~~~~l~ 129 (161)
T 2ijq_A 111 DYYGVDLLDVRTTVTNALS 129 (161)
T ss_dssp TGGGBCHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHhh
Confidence 2 45777777754
No 219
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.41 E-value=5.6 Score=36.68 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=57.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQA 245 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQA 245 (287)
....|..|+.++||+.++..+...|.+.. .+..|+.-|+=.|+-++|..=++.+..-+|.....-+.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~----~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 34678999999999999999997776665 89999999999999999999999999777777666443
No 220
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=76.90 E-value=8.1 Score=35.94 Aligned_cols=60 Identities=3% Similarity=-0.133 Sum_probs=32.1
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHhCCC
Q 023077 175 GQKAYGKG-MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-N-RHADCIALYKQLESNHPS 238 (287)
Q Consensus 175 G~aALerG-dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-G-q~EkAIALCQ~L~~~HPd 238 (287)
|..-..-| .|.+++++++.++...|.+.. +...-..++... | +.++++.+|.++.+.+|.
T Consensus 95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~----aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQ----VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 44444444 366666666666654443332 444444455554 5 566666666666655543
No 221
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=77.68 E-value=0.55 Score=47.33 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADC 225 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkA 225 (287)
+...++.++++|.+|+|+-|.+++..++...|.+.. |+.++|.||...|...+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~----ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKD----ARALQADAMEQLGYQTEN 514 (668)
Confidence 577899999999999999999999999987776665 999999999999987765
No 222
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.72 E-value=36 Score=32.19 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCCchHHHHHHHHHHHHHcCChHHH
Q 023077 148 MRVRRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPR--PTFFGGEIQIWLAMAYEANNRHADC 225 (287)
Q Consensus 148 ~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~--~S~lGGEAQmwLAtAYqa~Gq~EkA 225 (287)
-.+-.+.-+-|+....-.-........|.--|++|+|..|++++......+.. ....=.++++.-+..|...|+..+|
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 34444444555522111112223448899999999999999998888876553 2344568899999999999999999
Q ss_pred HHHHHHHH---Hh-CCCHHHHHH
Q 023077 226 IALYKQLE---SN-HPSKNIRRQ 244 (287)
Q Consensus 226 IALCQ~L~---~~-HPd~qVRqQ 244 (287)
.++|..-. .. +|+|.+.-.
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHH
Confidence 99886553 12 266655433
No 223
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=75.59 E-value=20 Score=26.95 Aligned_cols=58 Identities=21% Similarity=0.084 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
..++..|..++... + ..++...+.|....|. .+++.....+. +++++.||..|...|.
T Consensus 72 ~~a~~~L~~~L~d~---~---~~VR~~A~~aL~~~~~-~~a~~~L~~~l-~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDD---S---GFVRSGAARSLEQIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHC---C---THHHHHHHHHHHHHCS-HHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCC---C---HHHHHHHHHHHHHhCc-HHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 56788888888621 2 2589999999999996 56777777776 6999999999988775
No 224
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=74.43 E-value=19 Score=32.32 Aligned_cols=66 Identities=9% Similarity=-0.049 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHhCCCH
Q 023077 170 LMFELGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY----EAN---NRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 170 ~~yeaG~aALerG--dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY----qa~---Gq~EkAIALCQ~L~~~HPd~ 239 (287)
.=+-.|.....-| +|.+++.+++.++...|.+.. +...-..++ ... ++.++++.+|.++...+|..
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn 143 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN 143 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC
Confidence 3444555555666 999999999999998887766 555444444 555 89999999999999888853
No 225
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=73.16 E-value=10 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCc
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFF 204 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~l 204 (287)
-+-...+.|+..+.+|++..|+.+|-.|+..++....+
T Consensus 16 ~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 16 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 36677899999999999999999999999988776653
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=71.51 E-value=7.2 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
....+..|...++.|+|..|+.+++.++...|.+..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 344577899999999999999999999998777644
No 227
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=71.39 E-value=15 Score=35.42 Aligned_cols=63 Identities=13% Similarity=-0.019 Sum_probs=51.3
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCC
Q 023077 172 FELGQKAYGKG--MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPS 238 (287)
Q Consensus 172 yeaG~aALerG--dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd 238 (287)
+-.|-....-| +|.++++.++++++..+.+.. |...-..++...| ..++|++.|.+.++.+|+
T Consensus 111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~----aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~ 176 (567)
T 1dce_A 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFH----CWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (567)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHhhcccccc----HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence 33455555567 779999999999998888765 8888888888899 899999999999877775
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=71.06 E-value=6.9 Score=32.82 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S 202 (287)
..-.|..|..-|..|+|..|..+|+.+++..|.+.
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 45589999999999999999999999999777553
No 229
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=68.28 E-value=18 Score=34.23 Aligned_cols=68 Identities=13% Similarity=0.024 Sum_probs=51.4
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCHHH
Q 023077 171 MFELGQKAY-GKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN--HPSKNI 241 (287)
Q Consensus 171 ~yeaG~aAL-erGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~--HPd~qV 241 (287)
.|..-+.+| ..|+...|.++|+.....--.++ ......|+.||...|+.++|..+++.+.+. .|+..+
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPE---EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 466666665 67999999999999775322222 248889999999999999999999998743 455554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=67.44 E-value=8.8 Score=35.83 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCH
Q 023077 184 YGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEAN-----NRHADCIALYKQLESNHPSK 239 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~-----Gq~EkAIALCQ~L~~~HPd~ 239 (287)
..+|...+|+|+++.|..- .|.++.+|.+.|... |+.++|..++++-..-+|+.
T Consensus 179 l~~A~a~lerAleLDP~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCcc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 4788899999999776543 477999999999995 99999999999988899965
No 231
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=66.88 E-value=15 Score=34.34 Aligned_cols=51 Identities=25% Similarity=0.230 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
|.+.|+-|+.|+...|..... -+-|+.+||++|.-.|+.++|++.|+.+++
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 677888899998877754322 246899999999999999999999999994
No 232
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=66.65 E-value=11 Score=36.65 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGA 194 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~A 194 (287)
..|...+..|+|+.||+.+.++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA 174 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA 174 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc
Confidence 4566677777777777777776
No 233
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=66.41 E-value=42 Score=31.63 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC----chHHH--------------------------------------
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF----FGGEI-------------------------------------- 208 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~----lGGEA-------------------------------------- 208 (287)
.++.|-+++..|.+.+||..|..++...+...- ...++
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAYF 196 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAYF 196 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 467788889999999999888887766553311 11111
Q ss_pred --------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 209 --------------QIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 209 --------------QmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
+..|-.|| ++++.--|-.+++.|.+..|++.+.+||++++..=|.
T Consensus 197 T~c~LQp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 197 TKAKLSPIHRTNALQVAMSQHF-KHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADS 255 (325)
T ss_dssp GGSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 11222222 3467778899999999888999999999999988753
No 234
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=66.22 E-value=18 Score=34.24 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHhhCCCCC-------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 183 MYGRAIEFLEGALTIIPRPT-------FFGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S-------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
-|.+.|+-|+.|+...|... .--+-|+.+||++|.-.|+.++|++.|+.++..++
T Consensus 173 vy~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~~ 234 (495)
T 3lew_A 173 VYAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKDN 234 (495)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 36777788888888776431 11246889999999999999999999999996543
No 235
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.76 E-value=18 Score=28.69 Aligned_cols=62 Identities=21% Similarity=0.088 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
..++..|..++.. .+ ..++...+.|....|. .+++.....+. +++++.||..|...|.-+..
T Consensus 142 ~~~~~~L~~~l~d---~~---~~vr~~a~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 142 ERAVEPLIKALKD---ED---GWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp GGGHHHHHHHTTC---SS---HHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcC---CC---HHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHhcCC
Confidence 3455556555431 11 2577777777777765 56666666776 57788888888777765543
No 236
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.58 E-value=20 Score=28.08 Aligned_cols=62 Identities=21% Similarity=0.089 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
..++..|..++.. . ...++...+.|+...|. .+++.....+. ++|++.||..|...|.-|+.
T Consensus 137 ~~~~~~L~~~l~d---~---~~~vr~~A~~aL~~~~~-~~~~~~L~~~l-~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ERAVEPLIKALKD---E---DGWVRQSAADALGEIGG-ERVRAAMEKLA-ETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp GGGHHHHHHHTTC---S---SHHHHHHHHHHHHHHCS-HHHHHHHHHHH-HHCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHcC---C---CHHHHHHHHHHHHHhCc-hhHHHHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 3455556555541 1 13577777777777765 45666666666 67888888888888777654
No 237
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=63.50 E-value=11 Score=29.04 Aligned_cols=59 Identities=19% Similarity=-0.003 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH--HHcCChHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY--EANNRHADCIALYKQ 231 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY--qa~Gq~EkAIALCQ~ 231 (287)
.|..|+..|..|+|=+|=+.||.+....+...+.--+..|++|.|+ ...|+. |..++++
T Consensus 4 ~~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~ 64 (94)
T 2cwy_A 4 DWEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRK 64 (94)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHH
Confidence 4778999999999999999999999877433233334455555543 346666 6666654
No 238
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=62.52 E-value=15 Score=41.38 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
..+..|...++.|+|..|+.++..| .-..-|+.+|...|+.++||..|++-.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 4667899999999999999999995 267779999999999999999998764
No 239
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=61.46 E-value=20 Score=33.57 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
|.+.|+=|+.|+...|..... -+-|+.+||++|.-.|+.++|++.|+.+++
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 677788889998877754322 246899999999999999999999999994
No 240
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=61.44 E-value=96 Score=29.10 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---C-chHHH--------HHHH--------------------------
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPT---F-FGGEI--------QIWL-------------------------- 212 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S---~-lGGEA--------QmwL-------------------------- 212 (287)
.++.|-+++..|.+.+||..|..++...+... . ...++ .+.+
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 46779999999999999999988887665331 1 11111 1111
Q ss_pred ---------------------HHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 213 ---------------------AMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 213 ---------------------AtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
-.|| ++++.--|-.+++.|.+.-|++++.+||++++..=|.
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~-K~KNy~tAa~fArrLLel~p~~~~~~qArkil~~ce~ 246 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFF-KLKNFRTAAAFARRLLELGPKPEVAQQTRKILSACEK 246 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHH-HTTBHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 1122 3456677888999999888999999999999887753
No 241
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=60.81 E-value=23 Score=33.07 Aligned_cols=52 Identities=15% Similarity=0.073 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
|.+.|+-|+.|+...|..... -+-|+.+||++|.-.|+.++|++.|+.+++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 777888899998877743222 2468999999999999999999999999954
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=59.83 E-value=19 Score=37.05 Aligned_cols=65 Identities=12% Similarity=0.044 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNI 241 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qV 241 (287)
......+.-.+.+|+|.-|+..=.+|+...|..= ..+..||.+|...|+.++|+-. |- .||....
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF----~tW~~La~vYi~l~d~e~ALLt---LN-ScPm~t~ 402 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF----ESWYNLARCHIKKEEYEKALFA---IN-SMPRLRK 402 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHH---HH-HSCC---
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh----HHHHHHHHHHHHhccHHHHHHH---Hh-cCCCccc
Confidence 3556667778899999999999999998665443 4999999999999999999854 55 8886443
No 243
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=59.40 E-value=15 Score=29.81 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIP 199 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~ 199 (287)
+...+..|...|+-|+|++|..+|+++.....
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 45677888999999999999999999886544
No 244
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=59.20 E-value=4.8 Score=39.12 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 170 LMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 170 ~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.-...|...+.+|.|..|+.+|..+ .-..-||.+|...|+.+.|+..|++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 5678899999999999999999986 256779999999999999999999873
No 245
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=59.09 E-value=27 Score=33.03 Aligned_cols=61 Identities=8% Similarity=0.015 Sum_probs=46.2
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 172 FELGQKA-YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 172 yeaG~aA-LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
|..-+.+ ...|++..|+++|+.....--.++ ......|+.+|...|+.++|..+++.+.+.
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4444444 367999999999999765321122 247788999999999999999999999844
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=58.72 E-value=12 Score=30.52 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S 202 (287)
-.-.|-.|...|..|+|..|..+++.+++..|.+.
T Consensus 74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 34589999999999999999999999999776654
No 247
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=57.63 E-value=24 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023077 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGAL 195 (287)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Al 195 (287)
..+.+|+..++.+...++.|.|..||-....++
T Consensus 7 ~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~ 39 (126)
T 2hsb_A 7 LRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAM 39 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467788999999999999999997765444433
No 248
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=57.58 E-value=15 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.385 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~ 203 (287)
-+-...+.|+..+.+|++..|+.+|-.|+..++.+..
T Consensus 19 ~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 19 FFLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 3666788999999999999999999999987766554
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.24 E-value=1e+02 Score=28.84 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCC--chHHHHHHHHHHHHHcCChHHHHHHHHHHH----HhCCCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTF--FGGEIQIWLAMAYEANNRHADCIALYKQLE----SNHPSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~--lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~----~~HPd~qV 241 (287)
+......+..-+++|+|..|...|..+.-..-...+ .=.++++..++-|-..|+..+|..+++++. ..++++.+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 334455677788899999999999997744332222 224788888999999999999999999853 24455655
Q ss_pred HH
Q 023077 242 RR 243 (287)
Q Consensus 242 Rq 243 (287)
+-
T Consensus 217 k~ 218 (445)
T 4b4t_P 217 KL 218 (445)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 250
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=55.85 E-value=18 Score=34.16 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCc----hHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFF----GGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~l----GGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
|.+.|+-|+.|+...|..+.. -+-|..+||.+|.-.|+.++|++.|+.++
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677778888888877643222 24688999999999999999999999998
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=55.84 E-value=32 Score=29.54 Aligned_cols=37 Identities=19% Similarity=0.088 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023077 157 VAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEG 193 (287)
Q Consensus 157 ~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~ 193 (287)
+|.+.+..+..-..=-+-|..||.+|++.-|..-|.+
T Consensus 23 ~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 23 AALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4555555554444556679999999999999887665
No 252
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=55.43 E-value=52 Score=29.80 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
|-.-+.+|-...=|..|++-+..... |-+-....|..+.+..+.++.+++.+.|. +|+.-++|-+|-.+|.-+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~----gf~~~~~~a~~~~~~~~~~~~~~la~~L~-~~~~deVR~~Av~lLg~~ 98 (240)
T 3l9t_A 26 GGQQMGRGSMKQYVARLEKDFSLIEH----GFKEEEQRALTDYKSNDGEYIKKLAFLAY-QSDVYQVRMYAVFLFGYL 98 (240)
T ss_dssp --------CHHHHHHHHHHHHTC---------CHHHHHHHHHHHHSCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHhCCHHHHHHHHHHHH-hCcchHHHHHHHHHHHhc
Confidence 44556777777778888777764443 33477888888889989999999999999 899999999999987766
No 253
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=54.43 E-value=1e+02 Score=26.49 Aligned_cols=82 Identities=17% Similarity=0.144 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------------------hhCCCCCCchHHHHHHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGAL-------------------------------TIIPRPTFFGGEIQIWLAMAY 216 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Al-------------------------------e~~~~~S~lGGEAQmwLAtAY 216 (287)
.+..+-.+..||=+.+|...|.-|+.+- ..+...|. -.+++=+.|
T Consensus 8 ~q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSd----e~yL~YWIy 83 (161)
T 2ynq_A 8 KQEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTD----EQYMLYWIY 83 (161)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSC----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCC----HHHHHHHHH
Confidence 4567788999999999999999887632 11112222 334555567
Q ss_pred HHcCChHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcCCCC
Q 023077 217 EANNRHADCIALYKQLESNHPSKNIRRQ--AADLRYILQAPKL 257 (287)
Q Consensus 217 qa~Gq~EkAIALCQ~L~~~HPd~qVRqQ--AKqLLyILEAPkL 257 (287)
-|.|+.++|+.+.+.|- |+++--- .+..=.|-..|+|
T Consensus 84 iGRg~~~eAlDiA~~L~----D~qLilyAl~K~~~~vk~d~~L 122 (161)
T 2ynq_A 84 IGRSQSEEALELARTIE----DRDLIVYALLKYREQIKGDTDL 122 (161)
T ss_dssp HHHTCHHHHHHHHHHHT----CHHHHHHHHHHHHHHHHTCSSS
T ss_pred HcCCchHHHHHHHHhcC----cHHHHHHHHHHHHHHHhcCCCC
Confidence 78999999999999997 5554433 3333334444443
No 254
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=54.11 E-value=18 Score=36.26 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 172 FELGQKAYGKGMYGRAI-EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 172 yeaG~aALerGdY~qAI-elLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
+..+.--...|+...|+ ..|+.|+..+|.+. .+.+.+|..+...|+.++|..+|+++++.
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455556788889998 99999999887542 36677788899999999999999999843
No 255
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=53.41 E-value=29 Score=32.50 Aligned_cols=52 Identities=13% Similarity=-0.092 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhCCCCC---C----------------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 023077 184 YGRAIEFLEGALTIIPRPT---F----------------FGGEIQIWLAMAYEANNRHADCIALYKQLESN 235 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S---~----------------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~ 235 (287)
|...|+-|+.|+...|... . --+-|+.+||++|.-.|+.++|++.|+++++.
T Consensus 156 y~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 156 LSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 6667777888888776432 1 12468999999999999999999999999954
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.22 E-value=1.4e+02 Score=27.46 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHhh-C-CCCCCchHHHHHHHHHHHHHcCC
Q 023077 168 AQLMFELG-QKAYGKGMYGRAIEFLEGALTI-I-PRPTFFGGEIQIWLAMAYEANNR 221 (287)
Q Consensus 168 ae~~yeaG-~aALerGdY~qAIelLE~Ale~-~-~~~S~lGGEAQmwLAtAYqa~Gq 221 (287)
|.+.|..- -.-+.+++|.+||++|...... . ......|+..-+.|+.+|...+-
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 33444432 2334667888888887665532 1 23445566666667777766654
No 257
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=52.14 E-value=35 Score=32.12 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhCCCCC---------CchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 023077 184 YGRAIEFLEGALTIIPRPT---------FFGGEIQIWLAMAYEANNRHADCIALYKQLESNH 236 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S---------~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H 236 (287)
|.+.|+-|+.|+...+..+ .--+-|+.+||++|.-.|+.++|++.|+.+++.+
T Consensus 160 y~~I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~~ 221 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKGY 221 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6677777888877664321 1134689999999999999999999999999544
No 258
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=51.61 E-value=38 Score=32.11 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhCCCC---C----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRP---T----FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~---S----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
|...|+-|+.|+...|.. + .--+-|+.+||.+|.-.|+.++|++.|+.+++
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888777642 1 11246899999999999999999999999993
No 259
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=51.38 E-value=87 Score=31.27 Aligned_cols=53 Identities=11% Similarity=-0.081 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 023077 182 GMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPS 238 (287)
Q Consensus 182 GdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd 238 (287)
+++..|-.+||.+++.+|.... ..+..+.-....|+.++|.++|+..+...|+
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~----~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGE----YINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHHHHHHHCCCchH----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 4477777777777776553322 2233333344567777777777776655553
No 260
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=50.95 E-value=33 Score=32.66 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCc-----hHHHHHHHHHHHH------HcCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTFF-----GGEIQIWLAMAYE------ANNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~l-----GGEAQmwLAtAYq------a~Gq~EkAIALCQ~L~~ 234 (287)
|...|+-|+.|+...|..... -+-|+.+||.+|. ..++.++|++.|+++++
T Consensus 161 y~~I~~DL~~A~~~Lp~~~~~~gr~tk~aA~allarvyL~~~~y~~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 161 FNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIK 222 (499)
T ss_dssp HHHHHHHHHHHGGGSCCTTSSTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCcCHHHHHHHHHHHHHhhhhccChhHHHHHHHHHHHHHh
Confidence 666777788888777643221 2347778888777 78999999999999993
No 261
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=50.37 E-value=32 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..+.+|...++.+...++.|.|..|+=++.++++
T Consensus 6 ~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~E 39 (122)
T 1wol_A 6 DWIKQAERDLEEARYAKSGGYYELACFLSQQCAE 39 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567888999999999999999987766655543
No 262
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=49.87 E-value=52 Score=31.21 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=18.9
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCC
Q 023077 173 ELGQKAYGKGM---YGRAIEFLEGALTIIPRPTF 203 (287)
Q Consensus 173 eaG~aALerGd---Y~qAIelLE~Ale~~~~~S~ 203 (287)
=.|...+.+++ +.+|+.+|++|++..|.+..
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~ 234 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH
Confidence 33444454433 46778888888877766543
No 263
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=48.16 E-value=29 Score=26.53 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 163 ERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 163 ~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..+.+|...++.+...++.|.|..|+=++.++++
T Consensus 6 ~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~E 39 (127)
T 1ufb_A 6 DWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAE 39 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4567888999999999999999987766555554
No 264
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=47.26 E-value=40 Score=26.37 Aligned_cols=45 Identities=11% Similarity=-0.109 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 207 EIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 207 EAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
.++..-+.++...|..+ ++.....+. .+|++.||..|-..|..+.
T Consensus 91 ~vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDER-AVEPLIKAL-KDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp HHHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhC
Confidence 35555555555555432 222222333 3555555555555555443
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.67 E-value=81 Score=29.18 Aligned_cols=76 Identities=14% Similarity=-0.034 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH---HhCCCHHHHH
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE---SNHPSKNIRR 243 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~---~~HPd~qVRq 243 (287)
.+...+..|.--++.|+|..|++.|..+...+... .--..+.+.++..+-..|+...|...+.++. ...+++.++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 34456778888888888888888888877655433 2334667777777888888888888877753 2345555553
No 266
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=45.66 E-value=21 Score=34.78 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=52.9
Q ss_pred HhcCCHHHHH---------HHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHh--CCCHHHH
Q 023077 179 YGKGMYGRAI---------EFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----HADCIALYKQLESN--HPSKNIR 242 (287)
Q Consensus 179 LerGdY~qAI---------elLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----~EkAIALCQ~L~~~--HPd~qVR 242 (287)
.==|+|+.-+ .+|+......... ...++.++.+|+.+..- .+.-+.+.+..+ . ++|++||
T Consensus 502 wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~---~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~~~-~~~~~d~evr 577 (621)
T 2vgl_A 502 YILGEFGNLIAGDPRSSPLIQFNLLHSKFHLC---SVPTRALLLSTYIKFVNLFPEVKATIQDVLRSDS-QLKNADVELQ 577 (621)
T ss_dssp HHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSSHH-HHSCSSHHHH
T ss_pred HHhcchHHHhcccCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHh-cCCCCCHHHH
Confidence 4456665543 3355444333322 34688888888766532 233444454445 4 9999999
Q ss_pred HHHHHHHHHhcCCCCCCCcccccccCCCC
Q 023077 243 RQAADLRYILQAPKLKISQEEMVTIPLIG 271 (287)
Q Consensus 243 qQAKqLLyILEAPkLkrp~eW~v~IPdL~ 271 (287)
+.|..++.+|..+.-....-..-+.|.+.
T Consensus 578 dRA~~y~~Ll~~~~~~~~~~vl~~~P~~~ 606 (621)
T 2vgl_A 578 QRAVEYLRLSTVASTDILATVLEEMPPFP 606 (621)
T ss_dssp HHHHHHHHHHHSSCSTTTTTTSSSCCCCC
T ss_pred HHHHHHHHHHccCHHHHHHHHhhcCCCCC
Confidence 99999999998653222233444566554
No 267
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=45.34 E-value=62 Score=30.01 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=38.5
Q ss_pred HHHhcCCH-HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCH
Q 023077 177 KAYGKGMY-GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN-RHADCIALYKQLESNHPSK 239 (287)
Q Consensus 177 aALerGdY-~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~ 239 (287)
+.+.+|.| .+|+++++.++...|.+.. +...-..++...| ..++++.+|..+...+|..
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~~yt----aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn 122 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPAHYT----VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS 122 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCchhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc
Confidence 34444555 3677777777776666554 6666666777777 3777777777777666653
No 268
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=43.19 E-value=51 Score=28.24 Aligned_cols=47 Identities=13% Similarity=-0.041 Sum_probs=32.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQL 232 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L 232 (287)
.|++.|+|..|+++.+.. ++. ..+-.|+.+--.+|+++=|+.+|+++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~---~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDS---ITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCH---HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHh------CCH---HHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 589999999999998764 222 34555666666666666666666554
No 269
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.07 E-value=1.8e+02 Score=28.23 Aligned_cols=83 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCHHHHHHHHH
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIAL-YKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIAL-CQ~L~~~HPd~qVRqQAKq 247 (287)
.-..-.|--|--+.+|+.|..++..|+...|.+.. .+..||+-+...|+.=+|+-. ++.|.-.+|.+..+..-..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~----~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ----PYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH----HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 35677899999999999999999999997776654 888899999889988887765 5677778999999988888
Q ss_pred HHHH-hcCC
Q 023077 248 LRYI-LQAP 255 (287)
Q Consensus 248 LLyI-LEAP 255 (287)
++.- ++.+
T Consensus 229 ~f~~~~~~~ 237 (497)
T 1ya0_A 229 ALSKALESR 237 (497)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHhhh
Confidence 7764 4443
No 270
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=40.58 E-value=99 Score=25.25 Aligned_cols=62 Identities=21% Similarity=0.080 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 023077 151 RRELEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAY 216 (287)
Q Consensus 151 ~~~L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAY 216 (287)
+.+++..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+=++|.-|.+..
T Consensus 20 ~eele~~~m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l----~~AH~~QT~Liq~E 81 (120)
T 3l8r_A 20 TEELQVAAFEIILNSGNARSIVHEAFDAMREKNYILAEQKLQEANDEL----LKAHQAQTDLLQEY 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 456777777665556678899999999999999999999999876522 22334666666654
No 271
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=40.52 E-value=58 Score=25.61 Aligned_cols=43 Identities=12% Similarity=-0.073 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 208 IQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 208 AQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
++.+.+.+....|..+ ++.....+. .+|++.||..|-..|..+
T Consensus 97 vr~~a~~aL~~~~~~~-~~~~L~~~l-~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 97 VRQSAAVALGQIGDER-AVEPLIKAL-KDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp HHHHHHHHHHHHCCGG-GHHHHHHHT-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHH-HHHHHHHHH-hCCCHHHHHHHHHHHHHc
Confidence 4444444444444422 222223333 344555555554444444
No 272
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.44 E-value=94 Score=29.05 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT---IIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNH---PSKNI 241 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale---~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~H---Pd~qV 241 (287)
.+-.+......+.+++|.+|-.++.++.. ..+.+..+-+.....++.-|...++..+|-..|..+..++ .++.-
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~ 256 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAK 256 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHH
Confidence 34556677788999999999999999752 2334455677888999999999999999999999887322 24444
Q ss_pred HHHHHHH--HHHhcCCC
Q 023077 242 RRQAADL--RYILQAPK 256 (287)
Q Consensus 242 RqQAKqL--LyILEAPk 256 (287)
+..|... ++++=+|.
T Consensus 257 ~~~~L~~~v~~~iLa~~ 273 (445)
T 4b4t_P 257 WKPVLSHIVYFLVLSPY 273 (445)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 4555443 56665663
No 273
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=40.39 E-value=50 Score=31.40 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
+.++....+.|..|+++||+..|..+|..|.+
T Consensus 379 ~~~~a~~~~~a~~~~~~gd~~~A~~~L~~A~~ 410 (464)
T 4fx5_A 379 QAEMAAAIQEGLDAQAAGDLDTATARLGRAMD 410 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455577899999999999999999999876
No 274
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=40.18 E-value=55 Score=31.50 Aligned_cols=79 Identities=8% Similarity=0.105 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCCC
Q 023077 187 AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-----HADCIALYKQLESNHPSKNIRRQAADLRYILQA-PKLKIS 260 (287)
Q Consensus 187 AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-----~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA-PkLkrp 260 (287)
++.+|+.++... . ....++.++++|+.+.+- .+.-..+.+... .++|++||+.|..++.+|.. |.+.
T Consensus 510 ~~~~l~~~l~~~-~---~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~~~~-~~~d~evrdRA~~y~~ll~~~~~~~-- 582 (618)
T 1w63_A 510 VLDILESVLISN-M---STSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYG-SSIDVELQQRAVEYNALFKKYDHMR-- 582 (618)
T ss_dssp HHHHHHHHHHST-T---CCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTTTHH--
T ss_pred HHHHHHHHHhcc-C---CCHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcCcHHHH--
Confidence 567788766533 1 234688888888865443 344555556665 79999999999999999864 4442
Q ss_pred cccccccCCCCc
Q 023077 261 QEEMVTIPLIGS 272 (287)
Q Consensus 261 ~eW~v~IPdL~~ 272 (287)
..-.-+.|.+..
T Consensus 583 ~~vl~~~P~~~~ 594 (618)
T 1w63_A 583 SALLERMPVMEK 594 (618)
T ss_dssp HHHHSCCCCCCC
T ss_pred HHHhhcCCCCCc
Confidence 222334555543
No 275
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=39.66 E-value=1.1e+02 Score=25.94 Aligned_cols=57 Identities=19% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC-CchHHHHHHHHHHHHHcCCh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT-FFGGEIQIWLAMAYEANNRH 222 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S-~lGGEAQmwLAtAYqa~Gq~ 222 (287)
++++=.|=.|.-++-+++|.+|-+.|..|...++..+ ..--.+..+|+-+-.-.|+.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456688899999999999999999999999888653 22335666776666666663
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=39.23 E-value=40 Score=25.34 Aligned_cols=30 Identities=23% Similarity=0.059 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|......|...=..|+|.+|+.++..+++
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455556666666677666666666554
No 277
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=39.03 E-value=41 Score=31.96 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHhcCCHHH----HHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHhCCCHHHHHHHHH
Q 023077 178 AYGKGMYGR----AIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH------ADCIALYKQLESNHPSKNIRRQAAD 247 (287)
Q Consensus 178 ALerGdY~q----AIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~------EkAIALCQ~L~~~HPd~qVRqQAKq 247 (287)
+.-=|+|+. +...|+..+..... ....+|.++.+|+.+.+-. ..-..+.+.....++|++||+.|..
T Consensus 449 ~wilGey~~~~~~~~~~l~~l~~~~~~---~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~ 525 (591)
T 2vgl_B 449 IWIVGEYAERIDNADELLESFLEGFHD---ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYI 525 (591)
T ss_dssp HHHHHTTCTTCTTHHHHHHHHSTTCSS---SCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHcccccccCHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHH
Confidence 344566654 34666666654432 2346888888888766543 2333455554424689999999999
Q ss_pred HHHHhcC
Q 023077 248 LRYILQA 254 (287)
Q Consensus 248 LLyILEA 254 (287)
++.+|..
T Consensus 526 y~~ll~~ 532 (591)
T 2vgl_B 526 YWRLLST 532 (591)
T ss_dssp HHTTTTT
T ss_pred HHHHHCc
Confidence 9999965
No 278
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.66 E-value=42 Score=25.02 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|......|...=..|+|.+|+.++..+++
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455566666777777777777777766655
No 279
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=37.43 E-value=53 Score=26.17 Aligned_cols=33 Identities=24% Similarity=0.083 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 164 RRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 164 ~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
++..|+..|..+..|+..++|..|-.+.|++.-
T Consensus 30 El~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~ 62 (98)
T 4fm3_A 30 ELKLAQDKYAAAQIAMTAESYKKARLLAEQAEL 62 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 577888999999999999999999999999764
No 280
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=37.35 E-value=49 Score=26.08 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.+|+..++.+..+|+.|.|..|+=...+|++
T Consensus 14 ~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~E 44 (135)
T 1o3u_A 14 DAAKDDLEHAKHDLEHGFYNWACFSSQQAAE 44 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5678889999999999999877755555443
No 281
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=37.27 E-value=79 Score=30.30 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCC----C-C----CchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPR----P-T----FFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~----~-S----~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
|...|+-|+.|+...|. . + .--+-|+.+||.+|.-.|+.++|++.|+.+++
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45556667777777662 1 1 11246889999999999999999999999994
No 282
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=35.86 E-value=59 Score=24.25 Aligned_cols=59 Identities=17% Similarity=-0.009 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 188 IEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 188 IelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
+..|..++.. .+ ..++...+.|.-..|..+ |+.....+. ++|++.||..|-..|.-+-.
T Consensus 44 ~~~L~~~L~d---~~---~~vR~~A~~aL~~~~~~~-a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 44 FEPLLESLSN---ED---WRIRGAAAWIIGNFQDER-AVEPLIKLL-EDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHHHHHGGGC---SC---HHHHHHHHHHHGGGCSHH-HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcC---CC---HHHHHHHHHHHHhcCCHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc
Confidence 5666666651 22 369999999999998754 555555555 58999999999999887754
No 283
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=35.74 E-value=84 Score=29.15 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhCCCC--CCc----hHHHHHHHHHHHHH------cCChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRP--TFF----GGEIQIWLAMAYEA------NNRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~--S~l----GGEAQmwLAtAYqa------~Gq~EkAIALCQ~L~~ 234 (287)
|...|+-|+.|+...|.. +.. -+-|+.+||++|.- .++.++|++.|+.+++
T Consensus 169 y~~I~~DL~~A~~~Lp~~~~~~~gr~tk~aA~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 169 YTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHHGGGSCCTTCSCTTSCCHHHHHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccCCCCCCCcHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 567778888888777642 111 24577777777764 4899999999999993
No 284
>2qf9_A Putative secreted protein; structural genomics, DUF305, Q8CK01, PSI-2, protein structure initiative; HET: MSE; 1.69A {Streptomyces coelicolor A3}
Probab=35.35 E-value=37 Score=28.67 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 221 RHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 221 q~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
-++.||.+++.....-.||+++.+|+.++...+
T Consensus 123 HH~~AI~ma~~~~~~g~dp~lk~lA~~ii~~Q~ 155 (179)
T 2qf9_A 123 HHRGGVHMAKGCVERCTVGVEKRLARGMVESQE 155 (179)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467888888888767888999998888765543
No 285
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=33.41 E-value=3e+02 Score=25.68 Aligned_cols=43 Identities=14% Similarity=0.275 Sum_probs=26.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhC-C-CCCCchHHHHHHHHHHHHHcC
Q 023077 178 AYGKGMYGRAIEFLEGALTII-P-RPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 178 ALerGdY~qAIelLE~Ale~~-~-~~S~lGGEAQmwLAtAYqa~G 220 (287)
-+.+++|.+||++|-...... . .....|+..-++|+.+|...|
T Consensus 45 y~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 45 YSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 356788888888776544222 1 334556666777777777665
No 286
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=32.54 E-value=1.7e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 023077 144 EEKRMRVRRELEKVAK-----EQAERRATAQLMFELGQKAYGKGMYGRAIEFL 191 (287)
Q Consensus 144 ~~~~~rv~~~L~~~a~-----~~a~~~e~ae~~yeaG~aALerGdY~qAIelL 191 (287)
+.|-..+++-|++.-. ....-++-|+..++.|..-|++|||-.|+.-+
T Consensus 10 ~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~i 62 (87)
T 2pmr_A 10 EKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCI 62 (87)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445555555554421 22345567889999999999999999998644
No 287
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=32.12 E-value=1e+02 Score=26.06 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCCh----HH----HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRH----AD----CIALYKQLESNHPSKNIRRQAADLRYIL 252 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~----Ek----AIALCQ~L~~~HPd~qVRqQAKqLLyIL 252 (287)
...++.+.+++..- +...=.++..||..++...|-. .. .+..+..+. .|+|+.||.-|..++-.|
T Consensus 138 ~~~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l-~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFEKK--LPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA-GHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHH
Confidence 34445554444322 2233346778999998876642 22 233445556 699999999999986444
No 288
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=32.07 E-value=2.7e+02 Score=33.65 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 150 VRRELEKVAKEQAERRATAQLMFELGQ 176 (287)
Q Consensus 150 v~~~L~~~a~~~a~~~e~ae~~yeaG~ 176 (287)
+++++++.+++-+.+++.|+..+.+++
T Consensus 1981 ~~~~~~~~~~ei~~~k~~~e~dL~~A~ 2007 (3245)
T 3vkg_A 1981 LQVQLDVRNKEIAVQKVKAYADLEKAE 2007 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 444555555555555555655554443
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.78 E-value=1.4e+02 Score=24.51 Aligned_cols=46 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 207 EIQIWLAMAYEANN-RHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 207 EAQmwLAtAYqa~G-q~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
.++.+.+.|....| ....++.....+. +++++.||..|-..|..+-
T Consensus 174 ~vr~~a~~aL~~~~~~~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 174 DVRNWAAFAININKYDNSDIRDCFVEML-QDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhC
Confidence 46666666666655 2455665555555 5777777777777766654
No 290
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.07 E-value=87 Score=29.61 Aligned_cols=51 Identities=20% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC---ch--------HHHHHHHHHHHHHc--------CChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTF---FG--------GEIQIWLAMAYEAN--------NRHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~---lG--------GEAQmwLAtAYqa~--------Gq~EkAIALCQ~L~~ 234 (287)
|.+.|+-|+.|+...|.... .| +-|+.+||.+|.-. ++.++|++.|+.+++
T Consensus 163 ~~~I~~DL~~A~~~Lp~~~~~~~~g~~~~r~tk~aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~ 232 (535)
T 3ihv_A 163 YEYIEDDLLYACDILPYATDDQYRESNDYRFSKGAALGLLTKVYATWAGYPVKDESKWEAAAKTARILVE 232 (535)
T ss_dssp HHHHHHHHHHHHHHCCCTTTCCSSSCCTTSCCHHHHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccCccHHHHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHh
Confidence 66667778888877764321 22 35777777777664 678999999999994
No 291
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=30.63 E-value=3.1e+02 Score=24.93 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCH
Q 023077 183 MYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNR-HADCIALYKQLESNHPSK 239 (287)
Q Consensus 183 dY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq-~EkAIALCQ~L~~~HPd~ 239 (287)
+|..++++++++++..|.|.. |...-..++...|. .+++++.|.+++..||.-
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~----AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 125 NWARELELCARFLEADERNFH----CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred cHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 599999999999998888876 77777777778888 499999999999888753
No 292
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=30.63 E-value=46 Score=36.31 Aligned_cols=66 Identities=6% Similarity=-0.111 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhh----CCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 023077 165 RATAQLMFELGQKAY-GKGMYGRAIEFLEGALTI----IPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLES 234 (287)
Q Consensus 165 ~e~ae~~yeaG~aAL-erGdY~qAIelLE~Ale~----~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~ 234 (287)
.+..+..|.+=+.+| ..|+...|.++|...... +.++. -...-|+.+|...|+.++|..+++.+..
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv----vTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL----DMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH----hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344555677766665 468899999988764332 23332 3778888889999999999988888864
No 293
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=30.56 E-value=76 Score=27.68 Aligned_cols=44 Identities=18% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 190 FLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 190 lLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
.|+++....-.+.+..+++.+-+|.||...|...+|-.|-++--
T Consensus 109 qLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 109 KLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 56776665334666677899999999999999999999877766
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.48 E-value=78 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.168 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
+......+..+=..|+|.+|+.++..+++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666777778888888887777665
No 295
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.07 E-value=1e+02 Score=28.72 Aligned_cols=50 Identities=14% Similarity=-0.063 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 023077 175 GQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLE 233 (287)
Q Consensus 175 G~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~ 233 (287)
-..|+..|+++.|.+.... ..++ +..-.||.++...|+.+.|+.+|+.+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~------~~~~---~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD------ESAE---MKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT------CCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred eehhhhcCCHHHHHHHHHh------hCcH---hHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3457889999999887432 1233 577889999999999999999999874
No 296
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=29.39 E-value=1.9e+02 Score=22.73 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 154 LEKVAKEQAERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 154 L~~~a~~~a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
|+..+.+.=.---.|+..+-.++.+.+.|+|..|-++|+.+-+
T Consensus 4 le~~~m~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 4 LEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3334443333445688889999999999999999999998755
No 297
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=29.36 E-value=58 Score=26.20 Aligned_cols=35 Identities=9% Similarity=-0.138 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 162 AERRATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 162 a~~~e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..-+.+|...++.+..+++.|+|..|.=+..+|++
T Consensus 10 ~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~E 44 (141)
T 3o10_A 10 RRWLRQARANFSAARNDLHKNANEWVCFKCYLSTK 44 (141)
T ss_dssp HHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHH
Confidence 34567788899999999999999877655555443
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.32 E-value=98 Score=22.97 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=10.3
Q ss_pred HHHcCChHHHHHHHHH
Q 023077 216 YEANNRHADCIALYKQ 231 (287)
Q Consensus 216 Yqa~Gq~EkAIALCQ~ 231 (287)
++..|+.++|+.+|+.
T Consensus 21 ~D~~g~y~eAl~lY~~ 36 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKK 36 (83)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 4666777777666653
No 299
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=29.24 E-value=1.4e+02 Score=21.97 Aligned_cols=24 Identities=46% Similarity=0.511 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhhhhccCcchhh
Q 023077 115 MRELEKKAEELQSKAEEDDSESEA 138 (287)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~ 138 (287)
+.||.++-|+|..++++-+--++-
T Consensus 27 ieelkkkweelkkkieelggggev 50 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEV 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcch
Confidence 467888888888888877654443
No 300
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=29.06 E-value=1e+02 Score=22.59 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
|......|..+=..|+|.+|+.++..+++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555556666777777777776655
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.02 E-value=3e+02 Score=25.89 Aligned_cols=91 Identities=9% Similarity=0.038 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhCC-CCCCchHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHH
Q 023077 166 ATAQLMFELGQKAY-GKGMYGRAIEFLEGALTIIP-RPTFFGGEIQIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIR 242 (287)
Q Consensus 166 e~ae~~yeaG~aAL-erGdY~qAIelLE~Ale~~~-~~S~lGGEAQmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVR 242 (287)
-++...+..|+..+ ..++|.+|-..|-.+..... ..++.-.++-.+++.|=...++..+=.. +.+.....+.+|+++
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHH
Confidence 45677888999999 99999999998877764333 3333334677888888888888544332 223332245678874
Q ss_pred HHHHHHHHHhcCCCC
Q 023077 243 RQAADLRYILQAPKL 257 (287)
Q Consensus 243 qQAKqLLyILEAPkL 257 (287)
|...|+..+....+
T Consensus 258 -~l~~L~~a~~~~dl 271 (394)
T 3txn_A 258 -AMKSVAEASHKRSL 271 (394)
T ss_dssp -HHHHHHHHHHTTCH
T ss_pred -HHHHHHHHHHhCCH
Confidence 66666666555444
No 302
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=28.97 E-value=1.4e+02 Score=23.69 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
..|...+..|..+=..|+|.+||.++..+++
T Consensus 16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455566667777788888888888888776
No 303
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=28.94 E-value=59 Score=27.02 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S 202 (287)
-.-.|-.+..-|.-|+|..|..+++.++...|.+.
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 34489999999999999999999999999666554
No 304
>3jq0_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Probab=28.91 E-value=42 Score=31.70 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhCCCCC-----C---chHHHHHHHHHHHHHcC--------ChHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPT-----F---FGGEIQIWLAMAYEANN--------RHADCIALYKQLE 233 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S-----~---lGGEAQmwLAtAYqa~G--------q~EkAIALCQ~L~ 233 (287)
|.+.|+-|+.|+...|... + --+-|+.+||.+|.-.| +.++|++.|+.++
T Consensus 153 ~~~I~~DL~~A~~~Lp~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~~~~~~~~~A~~~a~~vi 218 (493)
T 3jq0_A 153 MEQIKKDIQASENAFGSDYSFKLGRHFWSAAATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVK 218 (493)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCTTCTTSCCHHHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCccccccCCcccccHHHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence 5666677777776655321 1 12357777888877554 6799999999999
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=28.76 E-value=1.2e+02 Score=24.93 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 185 GRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 185 ~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
..++..|..++. ..+ ..++..-+.|....|.. .++.....+. ++|++.||.+|-..|..+.
T Consensus 127 ~~~~~~L~~~l~---d~~---~~vR~~a~~aL~~~~~~-~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 127 PKIVEQSQITAF---DKS---TNVRRATAFAISVINDK-ATIPLLINLL-KDPNGDVRNWAAFAININK 187 (280)
T ss_dssp HHHHHHHHHHTT---CSC---HHHHHHHHHHHHTC----CCHHHHHHHH-TCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh---CCC---HHHHHHHHHHHHhcCCH-HHHHHHHHHH-cCCCHHHHHHHHHHHHhhc
Confidence 355666665553 122 35888888888888874 4666666777 7999999999999988774
No 306
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=28.56 E-value=67 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 023077 169 QLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPT 202 (287)
Q Consensus 169 e~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S 202 (287)
.-.|-.+..-|.-|+|..|..+++.+++..|.+.
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3489999999999999999999999999666553
No 307
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.95 E-value=1.1e+02 Score=22.99 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=8.3
Q ss_pred HHHcCChHHHHHHHH
Q 023077 216 YEANNRHADCIALYK 230 (287)
Q Consensus 216 Yqa~Gq~EkAIALCQ 230 (287)
++..|+.++|+.+|+
T Consensus 29 ~D~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 29 ADKEGNAEEAITNYK 43 (83)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHH
Confidence 355555555555554
No 308
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=27.45 E-value=87 Score=24.59 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 179 YGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 179 LerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
+..+++..++.+|... ...+.+..+ +.. +.=..+ -..|.++||+++|+.-|+.|+..+..
T Consensus 25 ~~~~~~~~~l~~L~~L-~~~~iT~e~------L~~--------T~IGk~-Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 25 VSRKKTEGALDLLKKL-NSCQMSIQL------LQT--------TRIGVA-VNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp HHTTCCSSHHHHHHHH-HTSCCCHHH------HHH--------TCHHHH-HHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH-hCCCCCHHH------HHH--------cchhHH-HHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 3456778899999885 555554332 111 111122 23466345999999999999887654
No 309
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=26.69 E-value=70 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 023077 212 LAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADL 248 (287)
Q Consensus 212 LAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqL 248 (287)
+++|-.+.=..=+||.+|.++...+.|+.+|.-+..+
T Consensus 20 ~~rai~aL~~EleAI~~Y~q~A~~t~D~evk~vl~~i 56 (95)
T 1zpy_A 20 MHRAIISLREELEAVDLYNQRVNACKDKELKAILAHN 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3444444445668999999999999999999876654
No 310
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=26.02 E-value=1.9e+02 Score=23.74 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=32.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 023077 177 KAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYE-ANNRHADCIALYKQLESNHPSKNIRRQAADLR 249 (287)
Q Consensus 177 aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYq-a~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLL 249 (287)
.|+..|++.++=.++.++.. +. .... ..|+.-+| .-.|. .|||++||-||.-+.
T Consensus 27 eA~~~~d~~~~Nr~~~kl~~-----------~~----~eLk~r~Gd~R~a---Ll~Ll-~H~n~~VRl~AA~~~ 81 (123)
T 2i9c_A 27 DALLGNQISRFNRLFGVMAE-----------IA----DELKARDGDQRTA---LLSLF-EYPNMQVRLQAAKLT 81 (123)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-----------HH----HHHHHSTTCGGGG---GGGGG-GSSCHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHH-----------HH----HHHHhcCCcHHHH---HHHHH-hCCCccHHHHHHHHH
Confidence 47788888888887777554 11 1222 22553334 23455 588888888887553
No 311
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=25.00 E-value=72 Score=29.92 Aligned_cols=51 Identities=18% Similarity=0.052 Sum_probs=37.8
Q ss_pred HH-HHHHHHHHHHhh-CCCCCC----chHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHH
Q 023077 184 YG-RAIEFLEGALTI-IPRPTF----FGGEIQIWLAMAYEANN---------RHADCIALYKQLES 234 (287)
Q Consensus 184 Y~-qAIelLE~Ale~-~~~~S~----lGGEAQmwLAtAYqa~G---------q~EkAIALCQ~L~~ 234 (287)
|. ..|+-|+.|+.. .|..+. --+-|+.+||.+|.-.| +.++|++.|+.+++
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKRSLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHHHHHHc
Confidence 56 666778888876 552221 12468888899888777 89999999999994
No 312
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=24.75 E-value=77 Score=24.05 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 167 TAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 167 ~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
.|...+..|...=..|+|.+|+.++..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666667777777776666554
No 313
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.59 E-value=3.2e+02 Score=25.13 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHH
Q 023077 168 AQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRP--TFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQ 244 (287)
Q Consensus 168 ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~--S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQ 244 (287)
....+..-..++..|+|..+..++.++-...... ...=+..+.+.+.++...++..+|-..|-.+..++...+.-..
T Consensus 168 id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 168 IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 3456667778899999999999999987665433 3333466777788889999999999988887756665554433
No 314
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=23.86 E-value=1.1e+02 Score=32.82 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 023077 171 MFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANNRHADCIALYKQLESNHPSKNIRRQAADLRY 250 (287)
Q Consensus 171 ~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HPd~qVRqQAKqLLy 250 (287)
..-.|+..+--|+...+=.+++.......+..+. -+-+.++.||.+.|+...--.|-..+. .+++..||+.|---|.
T Consensus 527 ~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRy--gaa~alglAyaGTGn~~aIq~LL~~~~-~d~~d~VRraAViaLG 603 (963)
T 4ady_A 527 GLAVGLALINYGRQELADDLITKMLASDESLLRY--GGAFTIALAYAGTGNNSAVKRLLHVAV-SDSNDDVRRAAVIALG 603 (963)
T ss_dssp HHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHH-HCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhc-cCCcHHHHHHHHHHHH
Confidence 3445555555666665555556554433333332 356778899999999654445888888 8999999988877666
Q ss_pred Hh
Q 023077 251 IL 252 (287)
Q Consensus 251 IL 252 (287)
.+
T Consensus 604 lI 605 (963)
T 4ady_A 604 FV 605 (963)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 315
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.29 E-value=1.4e+02 Score=22.53 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=6.2
Q ss_pred HHcCChHHHHHHH
Q 023077 217 EANNRHADCIALY 229 (287)
Q Consensus 217 qa~Gq~EkAIALC 229 (287)
+..|+.++|+.+|
T Consensus 26 D~~g~y~eAl~~Y 38 (93)
T 1wfd_A 26 DAESRYQQALVCY 38 (93)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 4445555444444
No 316
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.17 E-value=2.8e+02 Score=21.89 Aligned_cols=52 Identities=15% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHcC
Q 023077 165 RATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIPRPTFFGGEIQIWLAMAYEANN 220 (287)
Q Consensus 165 ~e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~~~S~lGGEAQmwLAtAYqa~G 220 (287)
--.|+..+-.++.+.+.|+|..|-++|+.+-+.. ..+-++|.-|.+...+-+
T Consensus 17 aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l----~~AH~~Qt~liq~Ea~g~ 68 (105)
T 2e2a_A 17 AGDARSKLLEALKAAENGDFAKADSLVVEAGSCI----AEAHSSQTGMLAREASGE 68 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCC
Confidence 3458888999999999999999999999876522 233346666666544333
No 317
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=22.65 E-value=3.6e+02 Score=22.94 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023077 101 WEKEMRRRVKEIEEMRELEKKAEELQSKAEEDD 133 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (287)
..+++++-+.-|. +|-+.||++...+++++.
T Consensus 13 v~~~i~~m~~fI~--qEA~eKA~EI~~kAeeE~ 43 (233)
T 4efa_E 13 VNDELNKMQAFIR--KEAEEKAKEIQLKADQEY 43 (233)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3445555555443 577889999888887665
No 318
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=22.65 E-value=2.5e+02 Score=21.18 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023077 145 EKRMRVRRELEKVAKEQAERRATAQLMFELGQKA 178 (287)
Q Consensus 145 ~~~~rv~~~L~~~a~~~a~~~e~ae~~yeaG~aA 178 (287)
+...+|++.+.+.-.-+-++...|.+.|+.-..-
T Consensus 62 ~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkh 95 (104)
T 4afl_A 62 ALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677776665555556666677776654443
No 319
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.53 E-value=84 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 173 ELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 173 eaG~aALerGdY~qAIelLE~Ale 196 (287)
..+.+.+..|.|+.||+..++++.
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456788999999999998888775
No 320
>3nqp_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Bacteroides fragilis nctc 9343}
Probab=22.28 E-value=99 Score=29.18 Aligned_cols=51 Identities=4% Similarity=-0.087 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCCCCCC------------chHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHH
Q 023077 184 YGRAIEFLEGALTIIPRPTF------------FGGEIQIWLAMAYEANN------------RHADCIALYKQLES 234 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~------------lGGEAQmwLAtAYqa~G------------q~EkAIALCQ~L~~ 234 (287)
|.+.|+-|+.|+...|.... --+-|+.+||.+|.-.| +.++|++.|+.+++
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~~gr~~~tk~aA~allArvyL~~~~~~~g~~~~~~~~~~~A~~~a~~vi~ 241 (514)
T 3nqp_A 167 MTQIKSDLNKSMEYFGNMNDFDPYKRGKKVYWSKAATECLMGEVYLWTSKVTTGDDVANPADLTIAKTHLESVLN 241 (514)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCTTSSCTTSSCCHHHHHHHHHHHHHHHHHCCBTTBCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccccCcccccHHHHHHHHHHHHHHhCCcccCCCccchHHHHHHHHHHHHHHh
Confidence 66666777777776653211 12357788888886432 46899999999994
No 321
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=21.87 E-value=3e+02 Score=21.76 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHh
Q 023077 184 YGRAIEFLEGALT 196 (287)
Q Consensus 184 Y~qAIelLE~Ale 196 (287)
|..||++|-.++.
T Consensus 41 Y~~Aie~l~~alk 53 (117)
T 2cpt_A 41 YQHAVQYFLHVVK 53 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555554
No 322
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=21.75 E-value=1.1e+02 Score=22.93 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHhc
Q 023077 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQ 253 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVRqQAKqLLyILE 253 (287)
++.+.-.+.+.|+.++|+. +|+.|. -||.|. +||.|++
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~-Vc~qP~------~LL~i~q 58 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQPQ------QLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCH------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCHH------HHHHHHH
Confidence 4556667888999999888 999998 898874 4666664
No 323
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.64 E-value=1.4e+02 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCCCchHHHHHHHHHHHHHc
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALTIIP-----RPTFFGGEIQIWLAMAYEAN 219 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale~~~-----~~S~lGGEAQmwLAtAYqa~ 219 (287)
+-+-..+..++.|+++|+|...-..+-+|..+.. .+...||++---|..-|.-.
T Consensus 34 dgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~ 92 (131)
T 3iqc_A 34 EGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Confidence 4456678889999999999988777777765443 45556888877777777643
No 324
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=21.01 E-value=1.4e+02 Score=23.62 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchhhhhhhHHHHHHHHHHHHHHH
Q 023077 100 DWEKEMRRRVKEIEEMRELEKKAEELQSKAEEDDSESEAKEETEEEKRMRVRRELEKV 157 (287)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~~ 157 (287)
|+|..+...+.|++.+|.-.-..|.-+.++-..= |+--.|+|.+|+.+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~Y----------EeEI~rLr~eLe~r 87 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY----------EEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 6788888899999999888777777777665443 44456788888764
No 325
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.95 E-value=93 Score=24.51 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCChHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 023077 209 QIWLAMAYEANNRHADCIA-LYKQLESNHPSKNIRRQAADLRYILQA 254 (287)
Q Consensus 209 QmwLAtAYqa~Gq~EkAIA-LCQ~L~~~HPd~qVRqQAKqLLyILEA 254 (287)
++.|.-.+.+.|+.+.|+. +|+.|. -||.| .+||.||+.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~-Vc~qP------~~LL~i~q~ 62 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIA-VCGQP------QQLLQVLQQ 62 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HHSCH------HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HcCCH------HHHHHHHHh
Confidence 4566667888999999999 999998 88877 456777654
No 326
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=20.83 E-value=50 Score=30.60 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhCCCCCC--------chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 023077 184 YGRAIEFLEGALTIIPRPTF--------FGGEIQIWLAMAYEANNRHADCIALYKQLESNHP 237 (287)
Q Consensus 184 Y~qAIelLE~Ale~~~~~S~--------lGGEAQmwLAtAYqa~Gq~EkAIALCQ~L~~~HP 237 (287)
|.+.|+-|+.| ...|.... --+-|..+||++|.-.|+.++|++.|+.++ .++
T Consensus 172 y~~I~~DL~~A-~~Lp~~~~~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi-~y~ 231 (441)
T 3l22_A 172 YEHILSDLENI-SALDTEVNTYTGVTHATQAAANMLKMRVYMAMNEWDKAITAGELVT-GYS 231 (441)
T ss_dssp HHHHHHHTSCC-TTSBCCSSSHHHHHSCBHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-SCC
T ss_pred HHHHHHHHHHH-hccccccccCccCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCc
Confidence 44444555555 55543321 123578899999999999999999999998 543
No 327
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=20.39 E-value=35 Score=26.76 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=11.8
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHH
Q 023077 171 MFELGQKAYGK---GMYGRAIEFLEG 193 (287)
Q Consensus 171 ~yeaG~aALer---GdY~qAIelLE~ 193 (287)
.+..|+++=+. |+=.+|++++.+
T Consensus 19 ~Is~aL~~DE~~~~G~k~~A~~~Ykk 44 (89)
T 3eab_A 19 YISIALRIDEDEKAGQKEQAVEWYKK 44 (89)
T ss_dssp HHHHHHHHHHHSCSSSGGGSHHHHHH
T ss_pred HHHHHHHhhhcccCCCHHHHHHHHHH
Confidence 44455555555 556555544433
No 328
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=20.24 E-value=78 Score=26.09 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023077 166 ATAQLMFELGQKAYGKGMYGRAIEFLEGALT 196 (287)
Q Consensus 166 e~ae~~yeaG~aALerGdY~qAIelLE~Ale 196 (287)
+.|+..|+.|..-|.+||..||=+.+=+|++
T Consensus 5 ~lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3466778888888888888888777766665
Done!