BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023079
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=L2hgdh PE=2 SV=1
Length = 464
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 136/314 (43%), Gaps = 46/314 (14%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
+RG NGV GLR+++ + K EP + + A+ P +GIV+ + LS + + G +
Sbjct: 155 ERGLQNGVEGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSI 214
Query: 62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
+ V G + I++ + R+ DG++ P+ + + + + VV AGL +
Sbjct: 215 LRDFEVKG---------IEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYSD 265
Query: 117 ALAK-RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLD 173
+++ D +P RG Y L K K IYP+P+ LGVH T LD
Sbjct: 266 RISELSGCNPDPQIVP----FRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLD 321
Query: 174 GQIKFGP--------------DVEWIDGIDDTLS--FLN----RFDYSVNANRAERFYPE 213
G I GP D + D ++ L F+N F Y VN F E
Sbjct: 322 GTIWLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSE 381
Query: 214 ----IRKYYPDLRDGSLQPSYAGIRPK-LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIES 268
++K+ P++ + AG+R + L DFV G ++++ S
Sbjct: 382 TVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPS 441
Query: 269 PGLTSSMAIAEYVA 282
P TSS+AI+ +A
Sbjct: 442 PAATSSLAISRMIA 455
>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii
GN=L2HGDH PE=2 SV=1
Length = 419
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
+RG NGV GLR+++ + K EP + + A+ P +GIVD + LS + ++ G +
Sbjct: 154 ERGLQNGVQGLRLIQQDDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSV 213
Query: 62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDG------VSPLQPELTLIPKLVVNSAGLSA 115
N V ++ +++ R+ DG + ++ E + + VV AGL
Sbjct: 214 LTNFEV---------KDIEMAKESLSRSIDGMQYPIVIKNIKGE-EIRCQYVVTCAGL-- 261
Query: 116 PALAKRFIGLDNVFIPPAYYA-RGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL 172
+ R L P + RG Y L K K IYP+P+ LGVH TL +
Sbjct: 262 --YSDRISELSGCSPDPRIVSFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRM 319
Query: 173 DGQIKFGPD 181
DG I GP+
Sbjct: 320 DGSIWLGPN 328
>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12)
GN=lhgO PE=1 SV=3
Length = 422
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 123/315 (39%), Gaps = 61/315 (19%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
+R ANG+ L E + EP + + + P+SGIV + ++ ++ G
Sbjct: 107 ERTAANGIE-REWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEI 165
Query: 62 SNNTSVIGGHLEGNCMNVYISESKN---LRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118
N V G ++E KN +R G L ++ +GL A L
Sbjct: 166 IYNAEVSG-----------LNEHKNGVVIRTRQGGEYEASTL-------ISCSGLMADRL 207
Query: 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDGQI 176
K +GL+ FI + RG YF LA HLIYPIP+ LGVH+T +DG +
Sbjct: 208 VK-MLGLEPGFIICPF--RGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSV 264
Query: 177 KFGPDV----------EWIDGIDDTLSFL----------NRFDYSV----NANRAERFYP 212
GP+ + DTL L N + N+ +
Sbjct: 265 TVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLR 324
Query: 213 EIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID---FVIQGDDTHGVPGLVNLFGIESP 269
++KY P L LQP AG+R + P ID FV P ++ SP
Sbjct: 325 LVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVT-------TPRTIHTCNAPSP 377
Query: 270 GLTSSMAIAEYVAAK 284
TS++ I ++ +K
Sbjct: 378 AATSAIPIGAHIVSK 392
>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=L2HGDH PE=2 SV=1
Length = 463
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 44/313 (14%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
+RG NGV GLR+++ + K EP + + A+ P +GIVD + S + + G +
Sbjct: 154 ERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSV 213
Query: 62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
N V ++ ++ R+ DG+ P+ T + + VV AGL +
Sbjct: 214 LTNFEV---------EDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYSD 264
Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDG 174
+++ N I P RG Y L K K IYP+P+ LGVH T +DG
Sbjct: 265 RISELSGCNPNPRIVP---FRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDG 321
Query: 175 QIKFGP--------------DVEWIDGIDDTLS------FLNRFDYSVNANRAERF---- 210
I GP D D +D + F Y VN F
Sbjct: 322 NIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSAT 381
Query: 211 YPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIESP 269
++K+ P++ + AG+R + + I DFV G ++++ SP
Sbjct: 382 VKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSP 441
Query: 270 GLTSSMAIAEYVA 282
TSS+AI+ +A
Sbjct: 442 AATSSLAISGMIA 454
>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=L2HGDH PE=1 SV=3
Length = 463
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 19/187 (10%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
++G NGV GLR+++ + K EP + + A+ P +GIVD + LS + + G +
Sbjct: 154 EKGLQNGVPGLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSV 213
Query: 62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PLQPELT----LIPKLVVNSAGLSAP 116
N V G + +++ R+ DG+ P+ + T + + VV AGL +
Sbjct: 214 LTNFEVKG---------IEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSD 264
Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDG 174
+++ + I P RG Y L K K IYP+P+ LGVH T +DG
Sbjct: 265 RISELSGCTPDPRIVP---FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDG 321
Query: 175 QIKFGPD 181
I GP+
Sbjct: 322 SIWLGPN 328
>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella
vectensis GN=v1g172254 PE=3 SV=1
Length = 456
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 128/317 (40%), Gaps = 46/317 (14%)
Query: 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTF 61
+RG NGV L M++ ++EP + + A++SP +GIVD + L+ +G F
Sbjct: 145 ERGKKNGVKDLTMVDKRGIKEIEPHCEGMFAIVSPNTGIVDWAQVALA-------YGDDF 197
Query: 62 SNNTSVIGGHLEGNCMNVYISESKNLRNWDGVS-PL----QPELTLIPKLVVNSAGLSAP 116
I E K+ G++ P+ + T+ + V+ GL +
Sbjct: 198 RKGGGDIFTGYEVTDFKCASESGKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGGLYSD 257
Query: 117 ALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--LGVHVTLDLDG 174
LA++ I P RG Y L K K IYP+P+ LGVH T +DG
Sbjct: 258 RLAEKSGCNREPRIVPF---RGDYLVLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMDG 314
Query: 175 QIKFGP--------------DVEWIDGIDDTLSF-------LNRFDYSVNA-----NRAE 208
+ GP D+ D + D L+F F + V N A
Sbjct: 315 SVWLGPNAVLAFAREGYNLLDINLRD-LADALAFRGLRQLMFKYFSFGVGEYYRGLNHAA 373
Query: 209 RFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID-FVIQGDDTHGVPGLVNLFGIE 267
+ +++KY P + + +G+R + + +D FV G ++++
Sbjct: 374 QV-KQLQKYIPSVTADDVVSGPSGVRAQALDRDGNLVDDFVFDGGVGEIGSRVLHVRNAP 432
Query: 268 SPGLTSSMAIAEYVAAK 284
SP TSS+AIA VA K
Sbjct: 433 SPAATSSLAIARMVADK 449
>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
elegans GN=Y45G12B.3 PE=3 SV=2
Length = 433
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 119/317 (37%), Gaps = 57/317 (17%)
Query: 3 RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
R NG + M++ + ++EP + +KAL SP +GIVD +
Sbjct: 132 RAQTNGCRDIEMIDSSKITELEPHCRGLKALWSPHTGIVD------------------WG 173
Query: 63 NNTSVIGGHLEGNCMNVYISE--SKNLRNWDGVSPLQ----PELT-LIPKLVVNSAGLSA 115
T G E +Y S K N D P++ P L K ++ AGL
Sbjct: 174 YVTKRFGEDFEKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQ- 232
Query: 116 PALAKRFIGLDNVFIPPAYYA-RGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL 172
+ R L P RG Y L K K IYP+P+ LGVH T +
Sbjct: 233 ---SDRVAALSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRM 289
Query: 173 DGQIKFGPDVEWIDGIDDTLSF-------LNRFDYSVNANRAERFY-------------- 211
+G I GP+ + F L YS ++ +
Sbjct: 290 NGDIWLGPNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGVWIA 349
Query: 212 ---PEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLFGIE 267
+++++ P+L+ + AG+R + + + DFV P L+++
Sbjct: 350 AQVKQLQRFIPELKLSDVTRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSPLLMHVRNAP 409
Query: 268 SPGLTSSMAIAEYVAAK 284
SP TSS+AIA+ + ++
Sbjct: 410 SPAATSSLAIAKMITSE 426
>sp|P75063|Y051_MYCPN Uncharacterized protein MG039 homolog OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=MPN_051 PE=4 SV=1
Length = 384
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 117/285 (41%), Gaps = 40/285 (14%)
Query: 2 KRGTANGVH--GLRMLEGFEAMKMEPEL--QCVKALLSPASGIVDSHSLMLSLVGEAENH 57
+RG AN ++ ++ML E +K+EP + + V L S +D L A+ +
Sbjct: 108 QRGIANQINLEDIQMLSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQN 167
Query: 58 GTTFSNNTSV--IGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115
NT V I ++G Y+ + N P + K ++++AG A
Sbjct: 168 KVQICTNTEVTNISKQVDG----TYLVWTNN--------ETTPSFKV--KKIIDAAGHYA 213
Query: 116 PALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQ 175
LA D+ RG Y + N +++ +P G GV V+ LDG
Sbjct: 214 DYLA-HLAKADDF---EQTTRRGQYVVVTNQGELHLNSMVFMVPTIHGKGVIVSPMLDGN 269
Query: 176 IKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYY-PDLRDGSLQPSYAGIR 234
GP +DG+D + D A +I K+ P L + S+AG R
Sbjct: 270 FLVGPTA--LDGVDKEATRYITKD-------APCMLTKIGKHMVPSLNINNALISFAGSR 320
Query: 235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE 279
P ++ DF+I+ H P V L G++SPGLT++ AI
Sbjct: 321 P----IDKATNDFIIRV--AHNDPDFVILGGMKSPGLTAAPAIVR 359
>sp|P47285|Y039_MYCGE Uncharacterized protein MG039 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG039 PE=4 SV=1
Length = 384
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 105 KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL 164
K ++++AG A LA+ +DN +G Y L N +I+ +P G
Sbjct: 203 KKLIDAAGHYADWLAET-TQVDNF---KQTTRKGQYLVLKNQNNLKINTIIFMVPTIHGK 258
Query: 165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG 224
GV V LDG I GP+ ++GI+ + S++ + + +K P L+
Sbjct: 259 GVVVAEMLDGNILVGPNA--VEGIEKNKT------RSIDLDSINQIKTIGKKMVPSLQFE 310
Query: 225 SLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE 279
+ S+AG R DFVI+ ++ P + L G++SPGLTSS AIA+
Sbjct: 311 NSIYSFAGSR----AIDIETNDFVIRTAKSN--PNFIILGGMKSPGLTSSPAIAK 359
>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
briggsae GN=CBG06643 PE=3 SV=2
Length = 434
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 46/312 (14%)
Query: 3 RGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62
R NG + M++ +EP + +KAL SP +GIVD + + E G
Sbjct: 132 RAQTNGCRDIEMIDSKRITDIEPHCKGLKALWSPHTGIVDWGYVTKKFGEDFEKRGGKIY 191
Query: 63 NNTSV--IGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120
+ + I +L+ + + +S + +++ K ++ AGL + +A
Sbjct: 192 TSYPLEKIEDNLKDSNYPIRVSSDPSYADFE------------TKNLITCAGLQSDRVAA 239
Query: 121 -RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIK 177
D +P RG Y L K K IYP+P+ LGVH T ++G I
Sbjct: 240 LSGCSTDPKIVP----FRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIW 295
Query: 178 FGPDVEWIDGIDDTLSF-------LNRFDYSVNANRAERFY-----------------PE 213
GP+ + F L YS ++ + +
Sbjct: 296 LGPNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGIWIAAQVKQ 355
Query: 214 IRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLV-NLFGIESPGLT 272
++++ P+L+ + +G+R + + +D + T + L+ ++ SP T
Sbjct: 356 LQRFIPELKYSDVTRGPSGVRAQAMDSAGNLVDDFVFDSGTGKLSSLIMHVRNAPSPAAT 415
Query: 273 SSMAIAEYVAAK 284
SS+AIA+ + ++
Sbjct: 416 SSLAIAKMITSE 427
>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=l2hgdh PE=3 SV=1
Length = 446
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 79/314 (25%), Positives = 134/314 (42%), Gaps = 52/314 (16%)
Query: 2 KRGTANGVHGLRMLEGFEAM-KMEPELQC-VKALLSPASGIVDSHSLMLSLVGE-AENHG 58
KRG NGV +++LE E + +EP + ++A+ +P++GI+D + S + E G
Sbjct: 131 KRGIENGVPNIKLLESKEQLLSIEPFINGGLRAIHTPSTGIIDYKEVSKSFGNDITEKFG 190
Query: 59 TTFSNNTSVIGGHLEGNCMNV-YISESKNLRNWDGVSPLQPEL--TLIPKLVVNSAGLSA 115
++ S I L N N Y S K L G E +++ K + G+++
Sbjct: 191 ---KDSKSEI--KLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCGGMNS 245
Query: 116 PALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI----YPIPEDGG--LGVHVT 169
+AK G D I P RG + F+HLI YP+P LGVH T
Sbjct: 246 DRIAKVAYGNDEPSIVPF---RGSFLQFK----PEFRHLIKGNVYPLPNASFPFLGVHFT 298
Query: 170 LDLDGQIKFGPDV---------EWID-GIDDTLSFL----------NRFDYSVNA----N 205
++G++ GP+ ++ D + DT+ + + Y +
Sbjct: 299 KRINGEVWLGPNAVLSFDREGYKFTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDF 358
Query: 206 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTHGVPGLVNLF 264
+ F ++ Y P++ L+ +G+R + I DF+ D VP ++++
Sbjct: 359 NKDHFIQLLKPYMPNITVDMLEYGGSGVRSQAISKSGDLIEDFIF--DTPSDVP-IIHVR 415
Query: 265 GIESPGLTSSMAIA 278
SP TSS+AIA
Sbjct: 416 NSPSPAATSSLAIA 429
>sp|P59956|TKT_MYCBO Transketolase OS=Mycobacterium bovis (strain ATCC BAA-935 /
AF2122/97) GN=tkt PE=3 SV=1
Length = 700
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCY 140
+S+ ++LR W +P PE P + + + L + + + + Y RG +
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAM------ASRYERGLF 156
Query: 141 FSLANTKVAPFKHLIYPIPEDGGLGVHVT 169
A +PF H IY I DG + VT
Sbjct: 157 DPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|O06811|TKT_MYCTU Transketolase OS=Mycobacterium tuberculosis GN=tkt PE=1 SV=1
Length = 700
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSA----GLSAP---ALAKRFIGLDNVFIPPA 133
+S+ ++LR W +P PE P + + + GL++ A+A R
Sbjct: 103 LSDIESLRTWGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASR------------ 150
Query: 134 YYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVT 169
Y RG + A +PF H IY I DG + VT
Sbjct: 151 -YERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|P46708|TKT_MYCLE Transketolase OS=Mycobacterium leprae (strain TN) GN=tkt PE=3 SV=1
Length = 699
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSA----GLSAP---ALAKRFIGLDNVFIPPA 133
+S+ ++LR W +P PE + + + GL++ A+A R
Sbjct: 103 LSDIESLRTWGSTTPGHPEFRHTKGVEITTGPLGQGLASAVGMAMASR------------ 150
Query: 134 YYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVT 169
Y RG + A +PF H IY I DG + VT
Sbjct: 151 -YERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVT 185
>sp|A9BGT9|SYC_PETMO Cysteine--tRNA ligase OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=cysS PE=3 SV=1
Length = 469
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 188 IDDTLSFLNRFDYSVNANRAER--FYPEIRKY--YPDLRDGSLQPSYAGIRPKLSGPRQS 243
+D+ +S++ + A +AE Y E+ K+ Y +L ++ G+R ++S +++
Sbjct: 123 VDEIISYIKELEEKGYAYKAENGDVYFEVEKFSRYGELSHRKVEDLKVGVRVEVSEYKKN 182
Query: 244 PIDFVIQGDDTHGVPGLVNLFGIESPG 270
P+DF + G P + +G PG
Sbjct: 183 PLDFALWKASKEGEPFWESPWGKGRPG 209
>sp|A2Q8K8|LCL3_ASPNC Probable endonuclease lcl3 OS=Aspergillus niger (strain CBS 513.88
/ FGSC A1513) GN=lcl3 PE=3 SV=1
Length = 275
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL--DNVFIPPAYYAR 137
++ KNL +W + L+ TLIP LV+ + LSA L + ++ V I PAYY R
Sbjct: 24 NDPKNLLDWSAFTELR---TLIPTLVLTTGILSAFTLHRNYLRRFPTAVNITPAYYRR 78
>sp|P60068|CLRA_IDEDE Chlorate reductase subunit alpha OS=Ideonella dechloratans GN=clrA
PE=1 SV=1
Length = 914
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Query: 11 GLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGG 70
LR+L+G+ K QC + + L+L+L+G +HGTT S +T+ G
Sbjct: 425 ALRILDGYNNQKHFDGFQCGRLKI-----------LILTLIG---HHGTTGSIDTTFEGW 470
Query: 71 HLEGNC 76
LEGN
Sbjct: 471 RLEGNS 476
>sp|O30078|TTRA_ARCFU Tetrathionate reductase subunit A OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=ttrA PE=1 SV=1
Length = 1134
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 177 KFGPDVEWIDGID-DTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP 235
KFG V W ID +++ + +Y + R E YP R +YP + S +AGI
Sbjct: 583 KFGEPVRWGPPIDRHKVAYEDSLEYWMKKKRGENPYPAKRPWYPLTPEESYTEMFAGIAE 642
Query: 236 KLSGPRQSPIDF 247
+ P ++ I +
Sbjct: 643 EYPYPIKALIMY 654
>sp|Q1BZN5|MNMC_BURCA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain AU
1054) GN=mnmC PE=3 SV=1
Length = 643
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 45/238 (18%)
Query: 74 GNCMNVYISESKNLR---------------NWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118
G C+ Y + + +R W + L P +V+ +AG +A
Sbjct: 391 GLCVAQYAAAGERVRLLASTCVARLERRDDTWHALDDTGATLADAPVVVLANAGDAA--- 447
Query: 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKF 178
R GL +V + P RG L AP P P G G V LD DG +
Sbjct: 448 --RLAGLRHVTLQPV---RGQLTLLPPGTTAPL-----PCPAIGD-GYAVPLD-DGTLLI 495
Query: 179 GPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPD---LRDGSLQPSYAGIRP 235
G E DDT + ++ N +R P + PD LR G R
Sbjct: 496 GATFE----PDDTDPAMRAAGHAENLDRVRHLLPGLIGALPDPATLRGRVAFRWVVGDRL 551
Query: 236 KLSGPRQSPIDFVI--------QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 285
L GP Q D +PGL FG S GL + AE +A++
Sbjct: 552 PLIGPLADETQATANARALGGAQARDLPRMPGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|A0K2U3|MNMC_BURCH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain HI2424)
GN=mnmC PE=3 SV=1
Length = 643
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 82/238 (34%), Gaps = 45/238 (18%)
Query: 74 GNCMNVYISESKNLR---------------NWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118
G C+ Y + + +R W + L P +V+ +AG +A
Sbjct: 391 GLCVAQYAAAGERVRLLASTCVARLERRDDTWHALDDTGATLADAPVVVLANAGDAA--- 447
Query: 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKF 178
R GL +V + P RG L AP P P G G V LD DG +
Sbjct: 448 --RLAGLRHVTLQPV---RGQLTLLPPGTTAPL-----PCPAIGD-GYAVPLD-DGTLLI 495
Query: 179 GPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPD---LRDGSLQPSYAGIRP 235
G E DDT + ++ N +R P + PD LR G R
Sbjct: 496 GATFE----PDDTDPAMRAAGHAENLDRVRHLLPGLIGALPDPATLRGRVAFRWVVGDRL 551
Query: 236 KLSGPRQSPIDFVI--------QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 285
L GP Q D +PGL FG S GL + AE +A++
Sbjct: 552 PLIGPLADETQATANARALGGAQARDLPRMPGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|Q10231|ERG7_SCHPO Lanosterol synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=erg7 PE=2 SV=1
Length = 721
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 46 LMLSLVGEAENH--GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLI 103
++L ++G H T N +GG + + + N +WDGV+P+ PEL L+
Sbjct: 156 VVLRILGMDAGHPVATRARNRLHELGGAIGCPHWGKFWLATLNCYDWDGVNPIPPELWLL 215
Query: 104 PKLV 107
P +
Sbjct: 216 PDWI 219
>sp|Q978Z5|SYC_THEVO Cysteine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC 51530
/ DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=cysS PE=3
SV=2
Length = 454
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 211 YPEIRKY--YPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIES 268
Y E+RK+ Y +L + SL AG R ++ +++P DFV+ G P + +G
Sbjct: 141 YFEVRKFKDYGELSNQSLDQIIAGYRVAVNENKRNPEDFVLWKKKKAGEPSWPSPWGEGR 200
Query: 269 PGL-TSSMAIAE 279
PG AI E
Sbjct: 201 PGWHIEDTAITE 212
>sp|B1K1H7|MNMC_BURCC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Burkholderia cenocepacia (strain MC0-3)
GN=mnmC PE=3 SV=1
Length = 643
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 74/208 (35%), Gaps = 30/208 (14%)
Query: 89 NWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKV 148
W + L P +V+ +AG +A R GL +V + P RG L
Sbjct: 421 TWHALDDTGATLADAPVVVLANAGDAA-----RLAGLRHVALQPV---RGQLTLLPPGTT 472
Query: 149 APFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAE 208
AP P P G G V LD DG + G E DDT + ++ N +R
Sbjct: 473 APL-----PCPAIGD-GYAVPLD-DGTLLIGATFE----PDDTDPAMRAAGHAENLDRVR 521
Query: 209 RFYPEIRKYYPD---LRDGSLQPSYAGIRPKLSGPRQSPIDFVI--------QGDDTHGV 257
P + PD LR G R L GP Q D +
Sbjct: 522 HLLPGLIGALPDPATLRGRVAFRWVVGDRLPLIGPLADETQATANARALGGAQARDLPRM 581
Query: 258 PGLVNLFGIESPGLTSSMAIAEYVAAKF 285
PGL FG S GL + AE +A++
Sbjct: 582 PGLYGAFGFGSRGLVWAALGAELIASQL 609
>sp|Q49X94|GLPD_STAS1 Aerobic glycerol-3-phosphate dehydrogenase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=glpD PE=3 SV=1
Length = 557
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFY--PEIRKYYPD 220
G V+ + DG++ F E + T +F + S AN+ +R Y I +PD
Sbjct: 267 GQAVYFDTEKDGRMIFAIPREGKAYVGTTDTFYDNNKTSPLANQEDRDYLIDAINYMFPD 326
Query: 221 LR--DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFG 265
+ D ++ S+AG+RP + + P + + + G GL+ + G
Sbjct: 327 VNVADEDIESSWAGVRPLILEEGKDPSEISRKDEVWEGKSGLLTIAG 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,515,103
Number of Sequences: 539616
Number of extensions: 5098811
Number of successful extensions: 10285
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 10254
Number of HSP's gapped (non-prelim): 34
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)