Query 023079
Match_columns 287
No_of_seqs 115 out of 1246
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02352 thiamin_ThiO glycine 100.0 6.9E-34 1.5E-38 257.9 22.6 237 3-286 95-334 (337)
2 PRK11728 hydroxyglutarate oxid 100.0 3.1E-32 6.7E-37 253.0 25.5 251 2-285 108-393 (393)
3 TIGR03377 glycerol3P_GlpA glyc 100.0 1.8E-31 3.8E-36 256.1 26.5 250 3-286 87-345 (516)
4 TIGR01373 soxB sarcosine oxida 100.0 5.5E-31 1.2E-35 245.6 26.3 239 3-286 135-383 (407)
5 PRK00711 D-amino acid dehydrog 100.0 3.9E-31 8.5E-36 247.1 25.2 239 3-286 156-400 (416)
6 PRK12409 D-amino acid dehydrog 100.0 1.8E-30 4E-35 242.3 24.5 247 3-286 155-404 (410)
7 PRK11259 solA N-methyltryptoph 100.0 2.2E-30 4.8E-35 238.7 24.5 246 3-286 106-358 (376)
8 PRK11101 glpA sn-glycerol-3-ph 100.0 4.2E-30 9E-35 247.6 26.4 253 2-286 107-368 (546)
9 TIGR03197 MnmC_Cterm tRNA U-34 100.0 5E-31 1.1E-35 243.9 18.9 234 5-286 94-360 (381)
10 COG0579 Predicted dehydrogenas 100.0 4.6E-30 9.9E-35 236.2 22.0 258 1-285 108-372 (429)
11 TIGR03329 Phn_aa_oxid putative 100.0 6.9E-30 1.5E-34 241.9 21.0 246 4-286 143-392 (460)
12 TIGR01377 soxA_mon sarcosine o 100.0 7.6E-29 1.6E-33 228.8 25.3 249 3-286 102-358 (380)
13 PF01266 DAO: FAD dependent ox 100.0 3.3E-30 7.1E-35 234.4 14.5 249 3-284 105-358 (358)
14 KOG2665 Predicted FAD-dependen 100.0 1.3E-29 2.8E-34 219.3 15.6 270 1-287 153-453 (453)
15 KOG2844 Dimethylglycine dehydr 100.0 7.1E-29 1.5E-33 231.9 18.4 253 1-286 142-399 (856)
16 TIGR03364 HpnW_proposed FAD de 100.0 2.4E-28 5.2E-33 224.6 19.9 229 5-279 104-364 (365)
17 PLN02464 glycerol-3-phosphate 100.0 3.6E-27 7.8E-32 230.0 25.8 247 8-286 190-452 (627)
18 COG0665 DadA Glycine/D-amino a 100.0 5.4E-27 1.2E-31 216.8 22.9 244 6-286 116-365 (387)
19 PRK01747 mnmC bifunctional tRN 100.0 1.9E-27 4.2E-32 234.3 20.8 227 12-286 376-631 (662)
20 PRK13369 glycerol-3-phosphate 100.0 9.5E-27 2.1E-31 222.6 24.7 251 7-286 118-375 (502)
21 COG0578 GlpA Glycerol-3-phosph 99.9 1.1E-25 2.4E-30 211.2 24.1 247 9-286 127-384 (532)
22 PRK12266 glpD glycerol-3-phosp 99.9 9.8E-26 2.1E-30 215.7 24.3 233 25-286 135-376 (508)
23 KOG2853 Possible oxidoreductas 99.9 1.5E-24 3.2E-29 189.7 21.1 260 6-286 202-480 (509)
24 TIGR01320 mal_quin_oxido malat 99.9 3.3E-24 7.1E-29 203.5 22.7 264 2-284 127-441 (483)
25 PTZ00383 malate:quinone oxidor 99.9 2E-24 4.3E-29 204.8 20.8 254 3-284 160-470 (497)
26 PRK13339 malate:quinone oxidor 99.9 1.2E-23 2.6E-28 199.1 21.2 264 3-285 134-449 (497)
27 KOG2820 FAD-dependent oxidored 99.9 5.5E-23 1.2E-27 179.8 18.3 251 3-287 109-377 (399)
28 PRK05257 malate:quinone oxidor 99.9 8.6E-23 1.9E-27 194.1 21.0 264 3-285 133-447 (494)
29 KOG0042 Glycerol-3-phosphate d 99.9 1.5E-21 3.3E-26 179.5 16.9 246 8-286 186-446 (680)
30 KOG3923 D-aspartate oxidase [A 99.7 1.8E-16 3.8E-21 137.0 14.1 214 11-286 121-334 (342)
31 KOG2852 Possible oxidoreductas 99.6 1.4E-13 3.1E-18 118.7 15.9 214 36-286 139-361 (380)
32 PF06039 Mqo: Malate:quinone o 99.6 2.6E-13 5.7E-18 124.8 18.5 259 10-283 139-443 (488)
33 TIGR02032 GG-red-SF geranylger 98.6 6.2E-06 1.3E-10 72.9 19.8 205 39-285 86-295 (295)
34 PLN02697 lycopene epsilon cycl 98.3 4.6E-05 1E-09 73.5 18.7 203 40-286 188-411 (529)
35 PRK10157 putative oxidoreducta 98.3 5.7E-05 1.2E-09 71.2 18.0 68 39-122 103-170 (428)
36 TIGR01790 carotene-cycl lycope 98.3 9.7E-05 2.1E-09 68.5 19.1 61 39-115 80-141 (388)
37 PRK06185 hypothetical protein; 98.3 8.7E-05 1.9E-09 69.2 18.9 73 39-127 103-179 (407)
38 TIGR03378 glycerol3P_GlpB glyc 98.3 4E-06 8.7E-11 78.1 9.6 71 40-123 259-331 (419)
39 PRK08773 2-octaprenyl-3-methyl 98.3 4.9E-05 1.1E-09 70.6 17.0 68 39-122 108-175 (392)
40 PRK07333 2-octaprenyl-6-methox 98.2 9.7E-05 2.1E-09 68.7 17.7 68 39-122 106-173 (403)
41 PRK07608 ubiquinone biosynthes 98.2 8.5E-05 1.9E-09 68.7 16.9 67 39-122 106-173 (388)
42 TIGR01988 Ubi-OHases Ubiquinon 98.2 0.00016 3.4E-09 66.7 17.2 68 39-122 101-169 (385)
43 TIGR01984 UbiH 2-polyprenyl-6- 98.1 0.00016 3.4E-09 66.8 16.9 68 39-122 100-168 (382)
44 PLN02463 lycopene beta cyclase 98.0 0.00035 7.5E-09 66.2 17.1 62 39-116 109-170 (447)
45 PRK05714 2-octaprenyl-3-methyl 98.0 0.00073 1.6E-08 63.0 18.5 67 40-122 108-174 (405)
46 PRK05732 2-octaprenyl-6-methox 98.0 0.00067 1.5E-08 62.9 17.5 66 41-122 109-175 (395)
47 TIGR02730 carot_isom carotene 97.9 3.5E-05 7.5E-10 74.0 8.5 70 30-117 218-288 (493)
48 PF05834 Lycopene_cycl: Lycope 97.9 0.0017 3.7E-08 60.1 19.4 158 39-237 82-244 (374)
49 PRK08020 ubiF 2-octaprenyl-3-m 97.9 0.00063 1.4E-08 63.1 16.6 67 40-122 108-175 (391)
50 COG0644 FixC Dehydrogenases (f 97.9 0.0016 3.5E-08 60.7 19.2 71 38-123 89-159 (396)
51 PRK06847 hypothetical protein; 97.9 0.0047 1E-07 56.8 21.3 69 38-121 101-169 (375)
52 PRK10015 oxidoreductase; Provi 97.8 0.0017 3.6E-08 61.4 17.0 67 39-122 103-170 (429)
53 COG2081 Predicted flavoprotein 97.8 0.00012 2.7E-09 66.9 8.4 67 32-113 94-165 (408)
54 TIGR02023 BchP-ChlP geranylger 97.7 0.0083 1.8E-07 55.7 20.1 74 40-122 88-161 (388)
55 PRK06134 putative FAD-binding 97.7 0.00021 4.7E-09 70.0 9.7 72 34-119 207-282 (581)
56 PLN02612 phytoene desaturase 97.7 0.0061 1.3E-07 59.7 19.7 57 43-114 307-365 (567)
57 PF13738 Pyr_redox_3: Pyridine 97.7 0.00017 3.7E-09 60.3 7.6 63 40-117 78-140 (203)
58 PRK07494 2-octaprenyl-6-methox 97.6 0.002 4.4E-08 59.6 15.3 67 40-122 107-173 (388)
59 PRK07233 hypothetical protein; 97.6 0.016 3.4E-07 54.3 21.1 64 33-114 190-253 (434)
60 PRK07364 2-octaprenyl-6-methox 97.6 0.0047 1E-07 57.7 17.1 69 41-122 118-187 (415)
61 TIGR02734 crtI_fam phytoene de 97.6 0.00029 6.4E-09 67.7 8.7 68 30-115 208-276 (502)
62 PRK08244 hypothetical protein; 97.5 0.013 2.7E-07 56.3 19.5 67 41-122 97-165 (493)
63 PRK09126 hypothetical protein; 97.5 0.006 1.3E-07 56.5 15.8 66 41-122 107-173 (392)
64 PF03486 HI0933_like: HI0933-l 97.5 0.00039 8.5E-09 65.1 7.7 67 42-123 107-184 (409)
65 TIGR03862 flavo_PP4765 unchara 97.4 0.0012 2.7E-08 61.0 10.3 66 42-123 84-159 (376)
66 TIGR00275 flavoprotein, HI0933 97.4 0.0016 3.5E-08 60.9 11.3 65 43-123 104-178 (400)
67 PRK04176 ribulose-1,5-biphosph 97.4 0.00084 1.8E-08 58.9 8.6 73 39-118 99-176 (257)
68 PRK06834 hypothetical protein; 97.2 0.0032 7E-08 60.4 11.2 66 44-126 100-165 (488)
69 PRK06996 hypothetical protein; 97.1 0.033 7.1E-07 51.9 16.5 71 40-122 111-181 (398)
70 COG2509 Uncharacterized FAD-de 97.1 0.0029 6.2E-08 58.9 8.9 75 33-122 162-237 (486)
71 PRK08163 salicylate hydroxylas 97.0 0.0031 6.6E-08 58.5 8.8 68 40-122 105-173 (396)
72 TIGR01813 flavo_cyto_c flavocy 97.0 0.0027 5.8E-08 60.0 8.4 69 35-116 121-193 (439)
73 PRK12843 putative FAD-binding 96.9 0.004 8.7E-08 61.0 8.6 70 36-117 213-284 (578)
74 PRK08132 FAD-dependent oxidore 96.9 0.13 2.8E-06 50.1 19.1 63 45-122 126-191 (547)
75 PRK06481 fumarate reductase fl 96.9 0.0053 1.1E-07 59.2 9.0 71 34-117 180-253 (506)
76 PRK08013 oxidoreductase; Provi 96.8 0.11 2.4E-06 48.4 17.5 67 40-122 107-174 (400)
77 PRK11445 putative oxidoreducta 96.8 0.38 8.2E-06 44.0 21.6 68 40-122 95-163 (351)
78 PRK08849 2-octaprenyl-3-methyl 96.8 0.11 2.4E-06 48.1 17.3 59 44-117 110-169 (384)
79 PRK06126 hypothetical protein; 96.8 0.14 3.1E-06 49.8 18.5 70 42-122 124-194 (545)
80 TIGR00292 thiazole biosynthesi 96.7 0.0095 2.1E-07 52.2 8.8 70 40-116 96-171 (254)
81 COG1233 Phytoene dehydrogenase 96.7 0.0046 1E-07 59.4 7.4 67 29-113 212-279 (487)
82 PF00890 FAD_binding_2: FAD bi 96.7 0.0076 1.6E-07 56.4 8.7 68 42-122 139-210 (417)
83 PLN02487 zeta-carotene desatur 96.7 0.21 4.5E-06 48.9 18.7 63 42-116 292-361 (569)
84 TIGR01292 TRX_reduct thioredox 96.7 0.0088 1.9E-07 52.9 8.5 59 41-115 54-112 (300)
85 PRK08274 tricarballylate dehyd 96.6 0.01 2.3E-07 56.5 9.2 61 43-116 130-193 (466)
86 TIGR00136 gidA glucose-inhibit 96.6 0.006 1.3E-07 59.6 7.5 67 32-115 85-154 (617)
87 PF01494 FAD_binding_3: FAD bi 96.6 0.012 2.7E-07 53.0 8.7 73 39-122 106-178 (356)
88 PRK06184 hypothetical protein; 96.5 0.012 2.7E-07 56.5 9.1 66 44-122 109-174 (502)
89 PRK07588 hypothetical protein; 96.5 0.01 2.2E-07 55.0 8.0 58 44-117 103-160 (391)
90 TIGR02485 CobZ_N-term precorri 96.5 0.014 3E-07 55.1 8.8 60 43-116 122-184 (432)
91 PRK07121 hypothetical protein; 96.5 0.015 3.4E-07 55.8 9.1 63 42-116 175-240 (492)
92 PF13454 NAD_binding_9: FAD-NA 96.5 0.016 3.4E-07 46.8 7.8 41 58-113 114-155 (156)
93 PRK07190 hypothetical protein; 96.4 0.014 3.1E-07 56.0 8.6 62 45-122 110-171 (487)
94 PRK12839 hypothetical protein; 96.4 0.018 3.9E-07 56.4 9.3 65 40-118 210-279 (572)
95 PRK07045 putative monooxygenas 96.4 0.67 1.5E-05 42.8 19.2 61 42-117 104-167 (388)
96 PRK05192 tRNA uridine 5-carbox 96.3 0.01 2.3E-07 58.0 7.2 68 32-116 89-158 (618)
97 COG0654 UbiH 2-polyprenyl-6-me 96.3 0.49 1.1E-05 43.9 18.0 63 40-117 100-164 (387)
98 PLN02172 flavin-containing mon 96.3 0.017 3.8E-07 55.0 8.4 65 42-117 109-175 (461)
99 PRK05329 anaerobic glycerol-3- 96.3 0.025 5.4E-07 53.3 9.1 62 43-117 258-320 (422)
100 TIGR02028 ChlP geranylgeranyl 96.2 0.4 8.8E-06 44.7 17.0 73 40-123 89-167 (398)
101 PRK04965 NADH:flavorubredoxin 96.2 0.027 5.8E-07 52.1 8.9 63 45-122 184-247 (377)
102 PLN00093 geranylgeranyl diphos 96.2 0.66 1.4E-05 44.1 18.4 75 40-122 128-205 (450)
103 TIGR02733 desat_CrtD C-3',4' d 96.1 0.017 3.7E-07 55.4 7.5 70 32-114 223-293 (492)
104 PRK12842 putative succinate de 96.1 0.031 6.8E-07 54.8 9.3 64 43-118 213-278 (574)
105 PRK15317 alkyl hydroperoxide r 96.1 0.03 6.5E-07 54.2 8.9 60 41-115 263-322 (517)
106 PRK06617 2-octaprenyl-6-methox 96.1 0.038 8.1E-07 51.1 9.1 67 39-122 99-166 (374)
107 TIGR01789 lycopene_cycl lycope 95.9 0.37 8.1E-06 44.5 15.2 191 39-285 84-285 (370)
108 PRK09897 hypothetical protein; 95.9 0.039 8.5E-07 53.5 8.7 56 48-117 111-168 (534)
109 PRK08401 L-aspartate oxidase; 95.9 0.032 7E-07 53.2 8.0 59 43-118 119-178 (466)
110 TIGR00551 nadB L-aspartate oxi 95.8 0.029 6.3E-07 53.8 7.6 64 42-117 126-191 (488)
111 PF04820 Trp_halogenase: Trypt 95.8 0.039 8.5E-07 52.5 8.3 65 37-117 147-213 (454)
112 TIGR03140 AhpF alkyl hydropero 95.8 0.046 1E-06 52.9 8.9 60 41-115 264-323 (515)
113 PRK08010 pyridine nucleotide-d 95.8 0.044 9.5E-07 51.8 8.4 58 44-117 199-256 (441)
114 PRK08850 2-octaprenyl-6-methox 95.7 0.057 1.2E-06 50.4 8.9 66 41-122 108-174 (405)
115 TIGR03219 salicylate_mono sali 95.7 0.027 5.8E-07 52.8 6.7 59 41-116 102-160 (414)
116 COG0492 TrxB Thioredoxin reduc 95.7 0.037 8.1E-07 49.8 7.3 64 38-118 55-118 (305)
117 PRK06854 adenylylsulfate reduc 95.7 0.049 1.1E-06 53.8 8.7 64 41-117 129-197 (608)
118 PRK12844 3-ketosteroid-delta-1 95.7 0.046 9.9E-07 53.4 8.5 61 43-116 207-270 (557)
119 TIGR01812 sdhA_frdA_Gneg succi 95.7 0.055 1.2E-06 52.9 9.0 61 43-116 128-192 (566)
120 PF01593 Amino_oxidase: Flavin 95.7 0.026 5.7E-07 51.9 6.4 56 47-117 212-267 (450)
121 PRK14727 putative mercuric red 95.6 0.058 1.2E-06 51.7 8.7 57 45-117 229-285 (479)
122 PRK05945 sdhA succinate dehydr 95.6 0.061 1.3E-06 52.8 8.8 62 43-117 134-199 (575)
123 PRK08626 fumarate reductase fl 95.6 0.056 1.2E-06 53.9 8.6 62 43-117 157-222 (657)
124 TIGR01810 betA choline dehydro 95.5 0.044 9.6E-07 53.2 7.7 64 48-122 197-263 (532)
125 PRK12845 3-ketosteroid-delta-1 95.5 0.057 1.2E-06 52.8 8.4 62 43-117 216-280 (564)
126 PTZ00363 rab-GDP dissociation 95.5 0.073 1.6E-06 50.5 8.8 67 32-116 223-291 (443)
127 TIGR01816 sdhA_forward succina 95.5 0.064 1.4E-06 52.5 8.7 62 43-117 118-183 (565)
128 PRK06175 L-aspartate oxidase; 95.5 0.064 1.4E-06 50.7 8.4 61 43-116 127-190 (433)
129 PRK06452 sdhA succinate dehydr 95.5 0.064 1.4E-06 52.5 8.7 63 43-115 135-198 (566)
130 PRK08071 L-aspartate oxidase; 95.4 0.047 1E-06 52.7 7.4 63 42-116 128-191 (510)
131 PRK09564 coenzyme A disulfide 95.4 0.077 1.7E-06 50.1 8.7 63 44-122 191-254 (444)
132 TIGR03143 AhpF_homolog putativ 95.4 0.071 1.5E-06 52.1 8.6 61 40-117 56-116 (555)
133 PRK06183 mhpA 3-(3-hydroxyphen 95.4 0.071 1.5E-06 51.8 8.6 64 45-122 114-180 (538)
134 PRK07512 L-aspartate oxidase; 95.4 0.048 1E-06 52.7 7.3 63 42-116 134-198 (513)
135 PRK07573 sdhA succinate dehydr 95.4 0.077 1.7E-06 52.8 8.9 59 48-116 174-233 (640)
136 PRK12835 3-ketosteroid-delta-1 95.4 0.064 1.4E-06 52.7 8.1 60 45-116 214-276 (584)
137 PRK07843 3-ketosteroid-delta-1 95.3 0.078 1.7E-06 51.8 8.4 60 44-116 208-270 (557)
138 PRK09754 phenylpropionate diox 95.3 0.083 1.8E-06 49.2 8.2 64 43-122 185-249 (396)
139 PF01134 GIDA: Glucose inhibit 95.3 0.1 2.2E-06 48.5 8.5 58 40-113 91-150 (392)
140 PRK05249 soluble pyridine nucl 95.2 0.091 2E-06 49.9 8.6 59 44-117 216-274 (461)
141 TIGR03467 HpnE squalene-associ 95.2 0.049 1.1E-06 50.6 6.6 55 46-115 199-254 (419)
142 PRK14694 putative mercuric red 95.2 0.096 2.1E-06 50.0 8.5 58 44-117 218-275 (468)
143 PTZ00139 Succinate dehydrogena 95.2 0.086 1.9E-06 52.2 8.4 61 43-116 165-230 (617)
144 PRK08205 sdhA succinate dehydr 95.1 0.093 2E-06 51.6 8.5 62 43-117 139-208 (583)
145 PF01946 Thi4: Thi4 family; PD 95.1 0.059 1.3E-06 45.8 6.0 71 40-117 92-167 (230)
146 TIGR02732 zeta_caro_desat caro 95.0 0.093 2E-06 50.2 8.0 62 44-117 219-286 (474)
147 COG1635 THI4 Ribulose 1,5-bisp 95.0 0.15 3.3E-06 43.4 8.1 73 40-119 105-182 (262)
148 PRK06116 glutathione reductase 95.0 0.11 2.4E-06 49.2 8.3 57 45-116 209-266 (450)
149 PRK05675 sdhA succinate dehydr 94.9 0.11 2.4E-06 50.9 8.4 61 43-116 125-190 (570)
150 PLN02676 polyamine oxidase 94.9 0.071 1.5E-06 51.2 6.9 57 44-115 224-286 (487)
151 PRK06475 salicylate hydroxylas 94.9 0.14 3E-06 47.7 8.7 65 41-117 104-169 (400)
152 PRK12416 protoporphyrinogen ox 94.9 0.079 1.7E-06 50.4 7.2 53 44-113 226-278 (463)
153 PRK09078 sdhA succinate dehydr 94.9 0.11 2.5E-06 51.1 8.5 62 43-117 148-214 (598)
154 PRK07804 L-aspartate oxidase; 94.9 0.11 2.3E-06 50.7 8.1 65 42-116 142-211 (541)
155 PF00070 Pyr_redox: Pyridine n 94.9 0.089 1.9E-06 37.1 5.8 42 43-84 39-80 (80)
156 PRK05868 hypothetical protein; 94.9 0.12 2.5E-06 47.9 8.1 57 45-117 106-162 (372)
157 TIGR02731 phytoene_desat phyto 94.9 0.088 1.9E-06 49.9 7.4 62 43-114 212-275 (453)
158 KOG4254 Phytoene desaturase [C 94.9 0.051 1.1E-06 50.8 5.4 71 29-117 252-323 (561)
159 PRK08275 putative oxidoreducta 94.9 0.14 3E-06 50.1 8.8 60 44-116 137-201 (554)
160 PRK13977 myosin-cross-reactive 94.8 0.11 2.4E-06 50.6 7.7 93 13-117 190-295 (576)
161 PRK08243 4-hydroxybenzoate 3-m 94.8 0.14 3.1E-06 47.4 8.4 66 43-122 102-169 (392)
162 TIGR01989 COQ6 Ubiquinone bios 94.7 0.17 3.7E-06 47.8 8.8 67 40-122 113-189 (437)
163 PRK12837 3-ketosteroid-delta-1 94.6 0.15 3.2E-06 49.4 8.3 60 44-116 173-236 (513)
164 PLN00128 Succinate dehydrogena 94.6 0.15 3.3E-06 50.6 8.5 62 43-117 186-252 (635)
165 TIGR03169 Nterm_to_SelD pyridi 94.6 0.082 1.8E-06 48.5 6.2 61 38-116 48-108 (364)
166 TIGR01424 gluta_reduc_2 glutat 94.6 0.14 3.1E-06 48.4 7.9 58 44-116 207-264 (446)
167 PRK06416 dihydrolipoamide dehy 94.5 0.15 3.3E-06 48.4 8.0 60 45-116 214-273 (462)
168 TIGR01350 lipoamide_DH dihydro 94.5 0.17 3.7E-06 48.0 8.4 59 45-116 212-270 (461)
169 PRK06753 hypothetical protein; 94.5 0.14 3E-06 47.0 7.5 61 44-122 98-158 (373)
170 PRK06263 sdhA succinate dehydr 94.5 0.16 3.5E-06 49.5 8.2 61 43-116 133-198 (543)
171 PRK08958 sdhA succinate dehydr 94.4 0.18 3.8E-06 49.7 8.4 62 43-117 142-208 (588)
172 PRK11883 protoporphyrinogen ox 94.3 0.13 2.7E-06 48.5 7.0 53 45-114 222-274 (451)
173 PRK13748 putative mercuric red 94.3 0.2 4.3E-06 48.9 8.6 57 45-117 311-367 (561)
174 PLN02268 probable polyamine ox 94.3 0.12 2.7E-06 48.6 6.9 44 57-115 209-252 (435)
175 PF00743 FMO-like: Flavin-bind 94.3 0.18 3.9E-06 49.0 8.0 66 40-117 80-152 (531)
176 PF00732 GMC_oxred_N: GMC oxid 94.3 0.11 2.3E-06 46.2 6.0 77 34-122 185-266 (296)
177 KOG0404 Thioredoxin reductase 94.2 0.074 1.6E-06 45.4 4.5 58 44-118 70-127 (322)
178 COG1252 Ndh NADH dehydrogenase 94.2 0.13 2.9E-06 47.9 6.6 63 42-122 207-269 (405)
179 PRK10262 thioredoxin reductase 94.2 0.27 5.9E-06 44.3 8.5 59 41-116 60-118 (321)
180 PLN02507 glutathione reductase 94.1 0.24 5.2E-06 47.8 8.5 58 45-117 245-302 (499)
181 TIGR00562 proto_IX_ox protopor 94.0 0.17 3.6E-06 48.0 7.2 53 45-114 226-278 (462)
182 PRK07538 hypothetical protein; 94.0 0.27 5.9E-06 46.0 8.4 66 41-116 99-166 (413)
183 PRK07251 pyridine nucleotide-d 93.9 0.27 5.8E-06 46.5 8.3 56 45-116 199-254 (438)
184 PRK07236 hypothetical protein; 93.9 0.26 5.6E-06 45.7 8.0 57 44-117 100-156 (386)
185 PRK07803 sdhA succinate dehydr 93.8 0.28 6.1E-06 48.7 8.5 61 43-116 137-214 (626)
186 PRK07057 sdhA succinate dehydr 93.7 0.31 6.7E-06 48.0 8.5 60 44-116 148-212 (591)
187 PRK09231 fumarate reductase fl 93.7 0.3 6.4E-06 48.1 8.4 61 43-116 132-197 (582)
188 PRK07845 flavoprotein disulfid 93.6 0.35 7.6E-06 46.1 8.4 58 45-117 219-276 (466)
189 PRK07208 hypothetical protein; 93.5 0.25 5.4E-06 47.1 7.3 67 32-114 209-279 (479)
190 PLN02985 squalene monooxygenas 93.4 0.45 9.7E-06 46.1 8.9 69 39-122 142-214 (514)
191 PRK06069 sdhA succinate dehydr 93.4 0.34 7.4E-06 47.6 8.2 60 44-116 137-201 (577)
192 PLN02927 antheraxanthin epoxid 93.3 0.34 7.4E-06 48.2 8.1 64 41-122 191-255 (668)
193 TIGR01811 sdhA_Bsu succinate d 93.3 0.4 8.8E-06 47.4 8.6 64 43-116 128-197 (603)
194 PRK07818 dihydrolipoamide dehy 93.2 0.47 1E-05 45.2 8.7 59 45-116 214-274 (466)
195 PRK06912 acoL dihydrolipoamide 93.1 0.44 9.6E-06 45.3 8.3 59 44-116 211-269 (458)
196 PRK06327 dihydrolipoamide dehy 92.9 0.46 1E-05 45.4 8.2 62 44-116 224-285 (475)
197 TIGR01176 fum_red_Fp fumarate 92.9 0.52 1.1E-05 46.4 8.6 61 43-116 131-196 (580)
198 PLN02568 polyamine oxidase 92.8 0.36 7.7E-06 47.1 7.3 54 45-115 243-296 (539)
199 TIGR02053 MerA mercuric reduct 92.8 0.5 1.1E-05 45.0 8.2 60 45-116 208-267 (463)
200 KOG1335 Dihydrolipoamide dehyd 92.7 0.41 9E-06 44.1 7.0 63 40-113 249-312 (506)
201 PLN02661 Putative thiazole syn 92.7 0.69 1.5E-05 42.5 8.6 68 42-116 170-245 (357)
202 PRK04965 NADH:flavorubredoxin 92.7 0.35 7.5E-06 44.7 6.8 58 40-115 53-111 (377)
203 PRK09564 coenzyme A disulfide 92.7 0.32 6.8E-06 45.9 6.6 58 43-115 55-115 (444)
204 TIGR02061 aprA adenosine phosp 92.6 0.56 1.2E-05 46.4 8.5 61 44-117 126-193 (614)
205 PRK06370 mercuric reductase; V 92.6 0.55 1.2E-05 44.7 8.3 58 45-116 213-272 (463)
206 TIGR03169 Nterm_to_SelD pyridi 92.6 0.47 1E-05 43.5 7.6 59 45-122 192-250 (364)
207 TIGR01423 trypano_reduc trypan 92.4 0.52 1.1E-05 45.3 7.8 59 44-117 231-290 (486)
208 TIGR01438 TGR thioredoxin and 92.3 0.52 1.1E-05 45.3 7.7 60 45-116 221-280 (484)
209 PF12831 FAD_oxidored: FAD dep 92.3 0.04 8.6E-07 52.0 0.0 68 39-122 85-155 (428)
210 PRK12834 putative FAD-binding 92.2 0.59 1.3E-05 45.6 8.1 72 44-117 148-229 (549)
211 TIGR01421 gluta_reduc_1 glutat 92.2 0.56 1.2E-05 44.6 7.7 59 45-117 208-267 (450)
212 PRK09077 L-aspartate oxidase; 92.2 0.59 1.3E-05 45.5 8.0 60 44-116 138-208 (536)
213 PRK07395 L-aspartate oxidase; 92.2 0.38 8.3E-06 47.0 6.7 61 43-116 133-198 (553)
214 TIGR02374 nitri_red_nirB nitri 92.1 0.25 5.5E-06 50.3 5.5 59 40-115 50-108 (785)
215 PTZ00052 thioredoxin reductase 92.1 0.62 1.3E-05 44.9 7.9 58 45-117 223-280 (499)
216 COG3075 GlpB Anaerobic glycero 92.1 0.36 7.9E-06 43.6 5.7 61 44-117 258-319 (421)
217 PLN02815 L-aspartate oxidase 91.8 0.54 1.2E-05 46.4 7.3 62 42-116 153-223 (594)
218 COG1249 Lpd Pyruvate/2-oxoglut 91.8 0.76 1.6E-05 43.8 8.0 68 34-114 202-271 (454)
219 PTZ00318 NADH dehydrogenase-li 91.6 0.66 1.4E-05 43.7 7.4 59 45-122 229-287 (424)
220 TIGR02360 pbenz_hydroxyl 4-hyd 91.6 0.78 1.7E-05 42.6 7.8 66 43-122 102-169 (390)
221 PRK13512 coenzyme A disulfide 91.5 0.52 1.1E-05 44.6 6.7 49 55-115 69-117 (438)
222 PRK05976 dihydrolipoamide dehy 91.5 0.83 1.8E-05 43.6 8.1 60 44-116 221-282 (472)
223 PRK07846 mycothione reductase; 91.1 0.83 1.8E-05 43.4 7.6 56 46-117 209-264 (451)
224 COG2072 TrkA Predicted flavopr 91.1 0.35 7.6E-06 45.9 5.0 106 4-122 27-151 (443)
225 TIGR03385 CoA_CoA_reduc CoA-di 90.9 1.1 2.5E-05 41.9 8.3 61 45-122 180-241 (427)
226 PF13434 K_oxygenase: L-lysine 90.9 0.49 1.1E-05 43.3 5.6 46 58-113 293-339 (341)
227 PTZ00318 NADH dehydrogenase-li 90.9 0.72 1.6E-05 43.4 6.9 71 37-115 55-125 (424)
228 PRK06115 dihydrolipoamide dehy 90.8 1.2 2.6E-05 42.5 8.4 58 45-115 216-276 (466)
229 COG1231 Monoamine oxidase [Ami 90.8 0.7 1.5E-05 43.4 6.5 52 46-113 207-260 (450)
230 TIGR03385 CoA_CoA_reduc CoA-di 90.7 0.69 1.5E-05 43.4 6.6 47 54-114 54-102 (427)
231 COG3380 Predicted NAD/FAD-depe 90.6 0.27 5.9E-06 43.2 3.4 58 48-122 108-165 (331)
232 COG1232 HemY Protoporphyrinoge 90.6 0.85 1.8E-05 43.2 7.0 60 44-123 215-274 (444)
233 TIGR02374 nitri_red_nirB nitri 90.4 1 2.2E-05 46.1 7.8 61 47-122 185-246 (785)
234 PLN02529 lysine-specific histo 90.4 0.78 1.7E-05 46.3 6.9 41 58-114 366-406 (738)
235 TIGR03452 mycothione_red mycot 90.1 1.3 2.7E-05 42.2 7.9 56 46-117 212-267 (452)
236 PLN03000 amine oxidase 89.9 0.65 1.4E-05 47.6 5.9 51 44-115 381-431 (881)
237 KOG1346 Programmed cell death 89.9 0.42 9.2E-06 44.5 4.2 63 40-117 389-451 (659)
238 PRK08641 sdhA succinate dehydr 89.9 1.6 3.4E-05 43.1 8.5 65 42-116 131-201 (589)
239 KOG1399 Flavin-containing mono 89.2 1.6 3.4E-05 41.5 7.6 60 45-115 91-153 (448)
240 PTZ00058 glutathione reductase 88.9 2.2 4.7E-05 41.9 8.6 58 45-116 279-337 (561)
241 PLN02576 protoporphyrinogen ox 88.8 1.5 3.3E-05 41.9 7.4 52 45-113 240-295 (496)
242 PRK14989 nitrite reductase sub 88.7 0.96 2.1E-05 46.6 6.2 56 43-115 58-113 (847)
243 PRK09754 phenylpropionate diox 88.4 1.4 3E-05 41.0 6.7 46 54-116 68-113 (396)
244 PRK06467 dihydrolipoamide dehy 88.0 2.1 4.5E-05 40.9 7.8 60 45-116 216-275 (471)
245 PTZ00306 NADH-dependent fumara 87.9 2.1 4.6E-05 45.7 8.4 65 44-116 544-621 (1167)
246 PRK14989 nitrite reductase sub 87.6 2.6 5.7E-05 43.4 8.6 61 47-122 190-253 (847)
247 PLN02546 glutathione reductase 87.3 2.4 5.2E-05 41.6 7.8 58 45-117 294-352 (558)
248 PRK07845 flavoprotein disulfid 87.3 2.2 4.9E-05 40.6 7.5 53 49-115 97-151 (466)
249 TIGR01292 TRX_reduct thioredox 86.9 2.6 5.7E-05 36.9 7.3 59 49-117 181-240 (300)
250 PF13434 K_oxygenase: L-lysine 86.5 0.94 2E-05 41.5 4.2 48 54-112 105-156 (341)
251 PRK13512 coenzyme A disulfide 86.5 2.6 5.6E-05 39.9 7.4 59 45-122 190-249 (438)
252 PRK02106 choline dehydrogenase 86.0 2.2 4.9E-05 41.7 6.9 62 50-122 206-270 (560)
253 COG3486 IucD Lysine/ornithine 85.9 1.3 2.8E-05 41.1 4.8 48 57-114 291-339 (436)
254 PRK10262 thioredoxin reductase 85.9 2.5 5.4E-05 38.0 6.7 64 46-118 187-251 (321)
255 PLN02328 lysine-specific histo 85.7 1.6 3.4E-05 44.6 5.7 51 44-115 437-487 (808)
256 KOG1336 Monodehydroascorbate/f 85.6 2.3 5.1E-05 40.2 6.4 55 45-114 256-312 (478)
257 PRK08294 phenol 2-monooxygenas 85.4 42 0.00091 33.5 19.4 73 42-122 139-216 (634)
258 PRK13800 putative oxidoreducta 84.9 4 8.7E-05 42.4 8.4 61 43-116 138-206 (897)
259 PF07992 Pyr_redox_2: Pyridine 84.5 1.5 3.2E-05 36.1 4.2 51 49-114 63-121 (201)
260 PRK06292 dihydrolipoamide dehy 84.0 5.5 0.00012 37.7 8.4 59 44-116 210-269 (460)
261 KOG2404 Fumarate reductase, fl 83.6 2.7 5.8E-05 38.1 5.5 65 45-122 140-216 (477)
262 PRK12810 gltD glutamate syntha 83.5 4.5 9.7E-05 38.7 7.6 67 50-122 335-409 (471)
263 TIGR02462 pyranose_ox pyranose 83.1 2.8 6.1E-05 40.9 6.0 54 56-122 226-287 (544)
264 PRK05976 dihydrolipoamide dehy 82.6 4.1 8.9E-05 38.9 6.9 50 52-115 100-154 (472)
265 COG0445 GidA Flavin-dependent 82.5 1.4 3.1E-05 42.5 3.6 69 32-117 89-160 (621)
266 PLN02976 amine oxidase 82.4 3 6.5E-05 45.2 6.2 42 59-115 946-997 (1713)
267 TIGR01424 gluta_reduc_2 glutat 82.0 4 8.8E-05 38.6 6.6 49 47-114 93-141 (446)
268 COG1252 Ndh NADH dehydrogenase 81.6 1.6 3.5E-05 40.8 3.6 68 33-118 46-114 (405)
269 PRK06467 dihydrolipoamide dehy 81.5 4.7 0.0001 38.5 6.8 45 54-114 103-147 (471)
270 PRK08255 salicylyl-CoA 5-hydro 81.2 64 0.0014 33.0 15.2 50 41-117 94-143 (765)
271 TIGR03140 AhpF alkyl hydropero 81.2 5.2 0.00011 38.7 7.1 57 50-116 393-451 (515)
272 PTZ00153 lipoamide dehydrogena 80.6 9.9 0.00022 38.1 9.0 70 47-116 356-428 (659)
273 COG0029 NadB Aspartate oxidase 80.4 3.4 7.4E-05 39.4 5.3 65 42-117 131-198 (518)
274 PLN02507 glutathione reductase 80.4 6.3 0.00014 38.0 7.4 47 53-115 133-179 (499)
275 PRK05249 soluble pyridine nucl 78.2 9.1 0.0002 36.3 7.7 49 50-114 100-148 (461)
276 KOG1346 Programmed cell death 78.1 3.8 8.3E-05 38.4 4.7 65 32-118 250-314 (659)
277 PRK12769 putative oxidoreducta 77.3 10 0.00022 37.9 8.0 63 50-116 512-585 (654)
278 KOG2415 Electron transfer flav 77.1 68 0.0015 30.5 15.0 103 38-146 177-290 (621)
279 TIGR01316 gltA glutamate synth 76.8 11 0.00024 35.8 7.8 64 50-117 315-389 (449)
280 COG1251 NirB NAD(P)H-nitrite r 75.1 5.4 0.00012 40.0 5.2 47 52-115 67-113 (793)
281 PRK06115 dihydrolipoamide dehy 73.6 13 0.00029 35.3 7.5 46 54-115 103-148 (466)
282 PRK11749 dihydropyrimidine deh 73.1 11 0.00023 35.9 6.6 62 50-116 317-388 (457)
283 PRK06327 dihydrolipoamide dehy 72.9 11 0.00023 36.1 6.7 47 53-115 109-157 (475)
284 PRK06416 dihydrolipoamide dehy 72.1 13 0.00028 35.2 7.1 49 50-115 98-146 (462)
285 PRK15317 alkyl hydroperoxide r 72.0 13 0.00028 36.0 7.0 55 51-115 393-449 (517)
286 PF00996 GDI: GDP dissociation 71.9 16 0.00034 34.7 7.3 61 31-110 222-284 (438)
287 PRK09897 hypothetical protein; 71.7 11 0.00024 36.7 6.4 59 43-117 391-449 (534)
288 COG2303 BetA Choline dehydroge 71.0 17 0.00037 35.5 7.7 64 50-122 208-274 (542)
289 PRK12770 putative glutamate sy 70.9 12 0.00026 34.1 6.3 67 49-117 215-288 (352)
290 PRK06912 acoL dihydrolipoamide 70.1 16 0.00035 34.6 7.2 45 54-115 100-144 (458)
291 PLN02785 Protein HOTHEAD 70.1 17 0.00036 36.0 7.4 59 51-122 227-298 (587)
292 COG3634 AhpF Alkyl hydroperoxi 70.0 7.5 0.00016 35.7 4.5 62 42-118 264-328 (520)
293 TIGR01421 gluta_reduc_1 glutat 69.4 14 0.0003 35.1 6.5 44 50-114 97-140 (450)
294 PRK12770 putative glutamate sy 68.7 4.2 9.1E-05 37.1 2.8 59 45-116 69-131 (352)
295 PF07156 Prenylcys_lyase: Pren 68.3 15 0.00032 34.1 6.2 56 44-115 128-187 (368)
296 PRK06116 glutathione reductase 67.9 14 0.0003 34.9 6.2 42 52-114 101-142 (450)
297 PRK07251 pyridine nucleotide-d 67.3 21 0.00045 33.6 7.3 46 53-115 85-130 (438)
298 PRK14694 putative mercuric red 67.2 16 0.00035 34.7 6.5 41 58-114 111-151 (468)
299 TIGR03452 mycothione_red mycot 66.6 7.6 0.00016 36.9 4.1 39 57-115 105-143 (452)
300 TIGR01438 TGR thioredoxin and 66.5 23 0.00049 34.0 7.4 47 52-114 108-154 (484)
301 COG0446 HcaD Uncharacterized N 66.5 21 0.00046 32.6 7.1 60 44-118 178-240 (415)
302 PRK12831 putative oxidoreducta 66.5 23 0.0005 33.8 7.4 62 52-117 326-398 (464)
303 TIGR01350 lipoamide_DH dihydro 66.5 22 0.00048 33.6 7.3 45 54-115 99-143 (461)
304 PRK12809 putative oxidoreducta 66.4 19 0.00042 35.9 7.1 62 53-115 498-567 (639)
305 KOG1335 Dihydrolipoamide dehyd 65.9 21 0.00046 33.3 6.5 56 46-117 132-187 (506)
306 PRK12814 putative NADPH-depend 65.5 27 0.00059 34.9 7.9 65 52-116 369-438 (652)
307 PRK12779 putative bifunctional 65.3 8 0.00017 40.5 4.3 53 42-117 354-406 (944)
308 COG4529 Uncharacterized protei 64.5 22 0.00047 34.0 6.6 43 60-117 122-166 (474)
309 PTZ00367 squalene epoxidase; P 63.5 21 0.00047 35.1 6.6 78 43-122 130-225 (567)
310 TIGR01372 soxA sarcosine oxida 63.2 24 0.00052 37.2 7.3 63 47-122 354-419 (985)
311 KOG1298 Squalene monooxygenase 62.6 11 0.00024 35.1 4.1 70 38-119 141-212 (509)
312 PLN02546 glutathione reductase 62.3 20 0.00043 35.2 6.2 47 48-115 182-228 (558)
313 COG1249 Lpd Pyruvate/2-oxoglut 61.8 26 0.00056 33.5 6.7 47 52-116 102-148 (454)
314 PTZ00058 glutathione reductase 61.8 27 0.00059 34.3 7.0 14 101-114 200-213 (561)
315 TIGR01316 gltA glutamate synth 61.7 5.1 0.00011 38.1 1.9 51 43-117 182-232 (449)
316 PRK13984 putative oxidoreducta 61.5 27 0.00058 34.5 7.0 62 53-115 471-538 (604)
317 PRK11749 dihydropyrimidine deh 61.2 7.3 0.00016 37.0 2.9 51 43-117 189-239 (457)
318 TIGR01372 soxA sarcosine oxida 60.8 32 0.00069 36.3 7.7 73 41-115 212-286 (985)
319 TIGR01318 gltD_gamma_fam gluta 60.7 38 0.00083 32.3 7.7 65 51-116 327-399 (467)
320 PRK12771 putative glutamate sy 60.0 34 0.00075 33.5 7.4 60 51-116 312-381 (564)
321 PRK12778 putative bifunctional 59.5 35 0.00075 34.8 7.6 62 52-117 616-688 (752)
322 PRK14727 putative mercuric red 59.4 26 0.00057 33.5 6.4 41 58-114 121-161 (479)
323 PRK07846 mycothione reductase; 58.4 17 0.00037 34.5 4.9 14 101-114 126-139 (451)
324 PF06100 Strep_67kDa_ant: Stre 58.0 66 0.0014 31.0 8.6 62 44-116 207-275 (500)
325 COG2907 Predicted NAD/FAD-bind 56.5 20 0.00043 33.0 4.6 51 55-122 228-278 (447)
326 COG1251 NirB NAD(P)H-nitrite r 56.4 13 0.00028 37.4 3.7 55 48-117 191-245 (793)
327 PRK06370 mercuric reductase; V 56.1 30 0.00065 32.8 6.2 43 52-115 102-145 (463)
328 PF07338 DUF1471: Protein of u 55.6 56 0.0012 21.3 5.9 37 41-80 15-51 (56)
329 TIGR01423 trypano_reduc trypan 54.1 41 0.00088 32.4 6.7 50 54-115 113-163 (486)
330 PRK08010 pyridine nucleotide-d 53.4 39 0.00084 31.8 6.4 42 57-115 90-131 (441)
331 PRK12775 putative trifunctiona 53.3 8.8 0.00019 40.5 2.2 54 42-117 478-531 (1006)
332 COG1053 SdhA Succinate dehydro 53.1 21 0.00046 35.1 4.6 63 40-115 134-202 (562)
333 PRK12831 putative oxidoreducta 51.9 13 0.00027 35.6 2.8 49 46-116 193-241 (464)
334 PRK07818 dihydrolipoamide dehy 51.0 64 0.0014 30.6 7.5 29 74-115 119-147 (466)
335 TIGR02733 desat_CrtD C-3',4' d 50.9 66 0.0014 30.7 7.7 32 256-287 457-490 (492)
336 KOG1336 Monodehydroascorbate/f 50.1 31 0.00068 32.9 5.0 45 52-113 135-179 (478)
337 PTZ00052 thioredoxin reductase 49.0 22 0.00047 34.3 4.0 15 101-115 142-156 (499)
338 PRK13748 putative mercuric red 48.9 51 0.0011 32.1 6.6 41 58-114 203-243 (561)
339 PRK09853 putative selenate red 47.6 37 0.00081 35.8 5.6 49 43-116 588-636 (1019)
340 KOG2311 NAD/FAD-utilizing prot 47.2 25 0.00055 33.8 3.9 68 32-116 113-187 (679)
341 PRK12778 putative bifunctional 46.4 15 0.00034 37.3 2.6 52 43-117 480-531 (752)
342 COG0446 HcaD Uncharacterized N 44.0 40 0.00088 30.7 4.9 46 55-118 64-109 (415)
343 TIGR01318 gltD_gamma_fam gluta 43.1 18 0.0004 34.5 2.5 50 43-116 190-239 (467)
344 KOG2495 NADH-dehydrogenase (ub 42.9 72 0.0016 30.3 6.1 68 39-118 102-173 (491)
345 PRK06567 putative bifunctional 41.6 70 0.0015 33.7 6.4 64 52-115 648-728 (1028)
346 PRK12779 putative bifunctional 41.4 85 0.0018 33.0 7.1 62 52-118 492-565 (944)
347 PRK12775 putative trifunctiona 41.0 1.1E+02 0.0023 32.5 7.8 64 52-117 617-688 (1006)
348 KOG0685 Flavin-containing amin 40.5 31 0.00067 33.0 3.4 39 60-113 245-284 (498)
349 PRK12814 putative NADPH-depend 39.5 20 0.00044 35.8 2.2 51 42-116 241-291 (652)
350 PRK09853 putative selenate red 39.4 65 0.0014 34.1 5.8 59 52-116 715-780 (1019)
351 TIGR02053 MerA mercuric reduct 39.1 59 0.0013 30.8 5.3 43 53-114 97-139 (463)
352 COG3573 Predicted oxidoreducta 38.5 1.1E+02 0.0024 28.3 6.4 70 37-114 148-227 (552)
353 PRK13984 putative oxidoreducta 37.3 23 0.0005 34.9 2.2 50 43-116 332-381 (604)
354 TIGR03315 Se_ygfK putative sel 37.1 1.1E+02 0.0024 32.5 7.1 67 52-122 713-784 (1012)
355 KOG0405 Pyridine nucleotide-di 36.9 98 0.0021 28.7 5.8 50 50-114 236-286 (478)
356 TIGR01317 GOGAT_sm_gam glutama 36.8 27 0.00059 33.5 2.6 47 45-115 194-240 (485)
357 COG1445 FrwB Phosphotransferas 36.4 27 0.00059 26.8 2.0 55 38-115 12-68 (122)
358 PRK09929 hypothetical protein; 33.1 1.9E+02 0.0042 21.0 6.2 48 13-62 23-70 (91)
359 COG3486 IucD Lysine/ornithine 32.7 1.1E+02 0.0024 28.8 5.7 49 59-122 112-166 (436)
360 TIGR02730 carot_isom carotene 32.2 1.1E+02 0.0024 29.2 6.0 32 256-287 457-490 (493)
361 PLN02852 ferredoxin-NADP+ redu 29.8 59 0.0013 31.4 3.6 50 43-116 78-127 (491)
362 KOG3434 60S ribosomal protein 29.7 1.7E+02 0.0036 22.6 5.2 44 36-80 28-71 (125)
363 TIGR00829 FRU PTS system, fruc 29.7 58 0.0013 23.3 2.7 26 37-62 7-32 (85)
364 COG2984 ABC-type uncharacteriz 29.5 1.2E+02 0.0025 27.6 5.1 42 20-63 152-193 (322)
365 KOG2614 Kynurenine 3-monooxyge 29.4 84 0.0018 29.5 4.3 66 41-122 99-169 (420)
366 PRK12810 gltD glutamate syntha 29.1 38 0.00082 32.3 2.2 50 43-116 192-241 (471)
367 PLN02852 ferredoxin-NADP+ redu 27.7 3.8E+02 0.0083 25.9 8.7 59 57-115 288-354 (491)
368 KOG2495 NADH-dehydrogenase (ub 27.6 3.5E+02 0.0077 25.8 8.0 91 17-122 242-336 (491)
369 COG1148 HdrA Heterodisulfide r 26.4 60 0.0013 31.4 2.8 89 16-122 390-487 (622)
370 PHA02754 hypothetical protein; 26.2 2E+02 0.0043 19.0 6.0 38 44-84 17-54 (67)
371 PTZ00153 lipoamide dehydrogena 26.0 2.2E+02 0.0048 28.6 7.0 15 101-115 272-286 (659)
372 TIGR03143 AhpF_homolog putativ 25.9 2.1E+02 0.0047 27.9 6.8 49 56-117 191-248 (555)
373 KOG0029 Amine oxidase [Seconda 24.3 1.4E+02 0.0029 29.1 4.9 41 58-113 228-269 (501)
374 COG1397 DraG ADP-ribosylglycoh 23.8 1.1E+02 0.0025 27.6 4.0 57 4-61 18-78 (314)
375 TIGR03884 sel_bind_Methan sele 22.7 1.9E+02 0.0042 20.1 4.1 38 24-63 9-47 (74)
376 PRK12769 putative oxidoreducta 22.6 60 0.0013 32.5 2.3 49 44-116 377-425 (654)
377 COG0492 TrxB Thioredoxin reduc 21.7 3.6E+02 0.0078 24.2 6.9 56 48-116 182-239 (305)
378 KOG1439 RAB proteins geranylge 21.6 3.6E+02 0.0077 25.5 6.8 62 44-122 232-295 (440)
379 PRK06292 dihydrolipoamide dehy 21.3 1.7E+02 0.0036 27.6 5.0 14 101-114 128-141 (460)
380 PRK10259 hypothetical protein; 21.3 3.2E+02 0.007 19.6 5.2 34 41-78 46-79 (86)
381 PRK14864 putative biofilm stre 21.2 2.8E+02 0.006 20.8 5.0 50 13-71 38-87 (104)
382 PLN02172 flavin-containing mon 21.0 93 0.002 29.7 3.1 15 101-115 274-288 (461)
383 COG5044 MRS6 RAB proteins gera 21.0 94 0.002 29.0 2.9 52 43-110 228-279 (434)
384 TIGR01317 GOGAT_sm_gam glutama 20.4 3.1E+02 0.0067 26.3 6.6 55 56-114 348-413 (485)
385 smart00546 CUE Domain that may 20.2 41 0.0009 20.3 0.4 21 208-228 3-23 (43)
386 PRK12809 putative oxidoreducta 20.1 70 0.0015 31.9 2.2 49 44-116 360-408 (639)
No 1
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=6.9e-34 Score=257.88 Aligned_cols=237 Identities=22% Similarity=0.263 Sum_probs=194.7
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV 79 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V 79 (287)
..+..|++ +++|+++|+++++|.++ ..+|+|.|.+|++||.+++.+|++.|+++|++++++++|+++..++++| .|
T Consensus 95 ~~~~~~~~-~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v 173 (337)
T TIGR02352 95 LQSATGME-VEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAI 173 (337)
T ss_pred HHHhcCCc-eEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEE
Confidence 35667886 99999999999999985 6799999999999999999999999999999999999999999887776 48
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP 159 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 159 (287)
.|.+| .++||+||+|+|+|+..|.+ .++.| .+|+++.+...........+....
T Consensus 174 ~~~~g----------------~~~a~~vV~a~G~~~~~l~~------~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~ 227 (337)
T TIGR02352 174 VTPSG----------------DVQADQVVLAAGAWAGELLP------LPLRP----VRGQPLRLEAPAVPLLNRPLRAVV 227 (337)
T ss_pred EcCCC----------------EEECCEEEEcCChhhhhccc------CCccc----cCceEEEeeccccccCCcccceEE
Confidence 88888 89999999999999999864 34456 889998886541111111110000
Q ss_pred CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079 160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~ 239 (287)
...+.|++|..+|++++|++.+.. ..+...+++.++.+++.+.++||.+++.++.+.|+|+||+
T Consensus 228 --~~~~~y~~p~~~g~~~iG~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~r~~--- 291 (337)
T TIGR02352 228 --YGRRVYIVPRRDGRLVVGATMEES-----------GFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPG--- 291 (337)
T ss_pred --EcCCEEEEEcCCCeEEEEEecccc-----------CccCCCCHHHHHHHHHHHHHhCCCcccCcHHHheecCCCC---
Confidence 123478899888899999776532 2344456788999999999999999999999999999999
Q ss_pred CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
++|..|+||..+ ..+|+|+++|++|+|++++|++|+.+|++|+
T Consensus 292 --t~D~~piig~~~--~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~ 334 (337)
T TIGR02352 292 --TPDNLPYIGEHP--EDRRLLIATGHYRNGILLAPATAEVIADLIL 334 (337)
T ss_pred --CCCCCCEeCccC--CCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence 456788999987 5789999999999999999999999999986
No 2
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=3.1e-32 Score=253.03 Aligned_cols=251 Identities=27% Similarity=0.400 Sum_probs=202.1
Q ss_pred ccchhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe
Q 023079 2 KRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI 81 (287)
Q Consensus 2 ~~~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t 81 (287)
+.++++|++ +++++++|+++++|.+...+|+|.|++|++||..++.+|.+.++++|++++++++|+++..+++++.|++
T Consensus 108 ~~~~~~g~~-~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~ 186 (393)
T PRK11728 108 ERARANGIE-VERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRT 186 (393)
T ss_pred HHHHHCCCc-EEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEE
Confidence 345678997 9999999999999998777999999999999999999999999999999999999999988877888888
Q ss_pred cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCC-CCCcccCCccccceEEEEEcCCCCCCCCceeeeCCC
Q 023079 82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPE 160 (287)
Q Consensus 82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (287)
.++ +++||+||+|+|+|+..++++++. .++++.| .||+++.+.......+++.+|++|+
T Consensus 187 ~~g----------------~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p----~rGq~~~~~~~~~~~~~~~v~~~p~ 246 (393)
T PRK11728 187 TQG----------------EYEARTLINCAGLMSDRLAKMAGLEPDFRIVP----FRGEYYRLAPEKNQLVNHLIYPVPD 246 (393)
T ss_pred CCC----------------EEEeCEEEECCCcchHHHHHHhCCCCCCceEE----eeeEEEEeccccccccCCceecCCC
Confidence 877 799999999999999999998842 2344555 9999999975433346678888886
Q ss_pred CC--CceeEEeeecCCcEEECCCccccCCcccccccccccccC-C---------------------ChhhHHHH------
Q 023079 161 DG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYS-V---------------------NANRAERF------ 210 (287)
Q Consensus 161 ~~--~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~-~---------------------~~~~~~~~------ 210 (287)
+. +.++|++|..+|++++|++....... +.++.. . +.+.++++
T Consensus 247 ~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (393)
T PRK11728 247 PAFPFLGVHLTRMIDGSVTVGPNAVLAFKR-------EGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSK 319 (393)
T ss_pred CCCCcceEEeecCCCCCEEECCCcceehhh-------cCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhH
Confidence 53 45789999999999999865432100 001100 0 23344444
Q ss_pred ---HHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHH
Q 023079 211 ---YPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 285 (287)
Q Consensus 211 ---~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i 285 (287)
++.+.+++|.|.+.++.+.|+|+||....+ +.+-.||+|... ++.+++.|..|+|+|.||+||++|++++
T Consensus 320 ~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~-----~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 320 SGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVET-----PRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred HHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecC-----CCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 599999999999999999999999943222 456678988654 5899999999999999999999999864
No 3
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=100.00 E-value=1.8e-31 Score=256.06 Aligned_cols=250 Identities=24% Similarity=0.343 Sum_probs=195.0
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV 79 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V 79 (287)
.++.+|++ +++|+++|+.+++|.++ ..+|+++| +|++||.+++.++++.|.++|++|+++++|+++..+++++ .|
T Consensus 87 ~~~~~gi~-~~~l~~~e~~~~~P~l~~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv 164 (516)
T TIGR03377 87 ACREAGIP-AEEIDPAEALRLEPNLNPDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGV 164 (516)
T ss_pred HHHHCCCC-ceEECHHHHHHHCCCCChhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEE
Confidence 45778997 99999999999999996 67899999 5899999999999999999999999999999999887765 35
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP 159 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 159 (287)
++.+..+ +...+|+|++||||||+|+..|++++ +.++++.| .||++++++.... +..+..++
T Consensus 165 ~v~~~~~----------g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~~i~p----~kG~~lv~~~~~~---~~~~~~~~ 226 (516)
T TIGR03377 165 KVEDHKT----------GEEERIEAQVVINAAGIWAGRIAEYA-GLDIRMFP----AKGALLIMNHRIN---NTVINRCR 226 (516)
T ss_pred EEEEcCC----------CcEEEEEcCEEEECCCcchHHHHHhc-CCCCceec----ceEEEEEECCccc---cccccccc
Confidence 5432110 11347999999999999999999988 45666666 9999999975421 12222222
Q ss_pred CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079 160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~ 239 (287)
.+ ..+.+++| .++.+++|++.+..+ ++.++.++++.++.+++.++++||.|...++++.|+|+||.+.+
T Consensus 227 ~~-~~g~~~~P-~~~~~liGtT~~~~~---------~~~~~~~~~~~v~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~ 295 (516)
T TIGR03377 227 KP-SDADILVP-GDTISIIGTTSERID---------DPDDLPVTQEEVDVLLREGAKLAPMLAQTRILRAFAGVRPLVAV 295 (516)
T ss_pred CC-CCCcEEEE-CCCeEEEecCCCCCC---------CCCCCCCCHHHHHHHHHHHHHhCcccccCCEEEEEeecccccCC
Confidence 22 23466788 478899999887543 34466778899999999999999999999999999999998765
Q ss_pred CCC-----CCCCe-EEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 240 PRQ-----SPIDF-VIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 240 ~~~-----~~~~~-~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
++. ..++| +++....++.+|++.++|. ++|+++++|+.+++++.
T Consensus 296 ~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GG---kltt~r~~Ae~~~d~~~ 345 (516)
T TIGR03377 296 DDDPSGRNISRGIVLLDHAERDGLPGFITITGG---KLTTYRLMAEWATDVVC 345 (516)
T ss_pred CCCCCccccCCCeEEeecccccCCCCeEEEecc---hHHHHHHHHHHHHHHHH
Confidence 311 12466 5564322367899999983 69999999999999875
No 4
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=5.5e-31 Score=245.61 Aligned_cols=239 Identities=17% Similarity=0.165 Sum_probs=192.2
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc--------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ--------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE- 73 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~- 73 (287)
..++.|++ +++|+++|+++++|.++ ..+|+|.+.+|++||..++.+|++.|.++|++++++++|+++...
T Consensus 135 ~~~~~g~~-~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~ 213 (407)
T TIGR01373 135 AMRLNGVD-AELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRD 213 (407)
T ss_pred HHHHcCCC-eEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC
Confidence 35678997 99999999999999885 358999999999999999999999999999999999999999764
Q ss_pred CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCC
Q 023079 74 GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFK 152 (287)
Q Consensus 74 ~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~ 152 (287)
++.+ .|+|++| +++|++||+|||+|+..+.+++ +..+++.| .++++++.++.. ...+
T Consensus 214 ~~~~~~v~t~~g----------------~i~a~~vVvaagg~~~~l~~~~-g~~~~~~~----~~~~~~~~~~~~-~~~~ 271 (407)
T TIGR01373 214 GGRVIGVETTRG----------------FIGAKKVGVAVAGHSSVVAAMA-GFRLPIES----HPLQALVSEPLK-PIID 271 (407)
T ss_pred CCcEEEEEeCCc----------------eEECCEEEECCChhhHHHHHHc-CCCCCcCc----ccceEEEecCCC-CCcC
Confidence 4554 5888888 8999999999999999998877 45555555 777776655321 1122
Q ss_pred ceeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccc
Q 023079 153 HLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAG 232 (287)
Q Consensus 153 ~~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G 232 (287)
..+.. ...++|++|..+|++++|.+.+... .++...+.+..+.+++.+.++||.+.+.++.+.|+|
T Consensus 272 ~~~~~----~~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G 337 (407)
T TIGR01373 272 TVVMS----NAVHFYVSQSDKGELVIGGGIDGYN----------SYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGG 337 (407)
T ss_pred CeEEe----CCCceEEEEcCCceEEEecCCCCCC----------ccCcCCCHHHHHHHHHHHHHhCCCcCCCCeEEEecc
Confidence 22211 1234788998889999997643211 122233556788999999999999999999999999
Q ss_pred ccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 233 IRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 233 ~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+||+ ++|..|+||+.+ .+|+|+++|++|+|++++|++|+++|++|+
T Consensus 338 ~~~~-----t~D~~PiIg~~~---~~gl~~a~G~~g~G~~~ap~~G~~la~li~ 383 (407)
T TIGR01373 338 IVDV-----TPDGSPIIGKTP---LPNLYLNCGWGTGGFKATPASGTVFAHTLA 383 (407)
T ss_pred cccc-----CCCCCceeCCCC---CCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence 9999 457788999986 489999999999999999999999999985
No 5
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=3.9e-31 Score=247.05 Aligned_cols=239 Identities=22% Similarity=0.265 Sum_probs=189.9
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc-----cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ-----CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM 77 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~-----~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~ 77 (287)
..+++|++ +++|+++|+++++|.+. ..+|+|.|++|++||..++.+|++.++++|++|+++++|++++.+++++
T Consensus 156 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~ 234 (416)
T PRK00711 156 VLEEAGVP-YELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRI 234 (416)
T ss_pred HHHHcCCC-ceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEE
Confidence 45678997 99999999999999873 4689999999999999999999999999999999999999998887776
Q ss_pred -EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079 78 -NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY 156 (287)
Q Consensus 78 -~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~ 156 (287)
.|+|+++ +++||+||+|+|+|+..+++.+ +.+.++.| .+++++.+...... ...+.
T Consensus 235 ~~v~t~~~----------------~~~a~~VV~a~G~~~~~l~~~~-g~~~pi~p----~rg~~~~~~~~~~~--~~p~~ 291 (416)
T PRK00711 235 TGVQTGGG----------------VITADAYVVALGSYSTALLKPL-GVDIPVYP----LKGYSLTVPITDED--RAPVS 291 (416)
T ss_pred EEEEeCCc----------------EEeCCEEEECCCcchHHHHHHh-CCCcccCC----ccceEEEEecCCCC--CCCce
Confidence 4788776 7999999999999999999887 55666666 88887765322111 11111
Q ss_pred eCCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccce
Q 023079 157 PIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPK 236 (287)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~ 236 (287)
...+. .. .+..+..+|++++|++.+.. ..+...+.+..+.+.+.+.++||.+.+.++.+.|+|+|++
T Consensus 292 ~~~~~-~~-~~~~~~~~~~~~iG~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~ 358 (416)
T PRK00711 292 TVLDE-TY-KIAITRFDDRIRVGGMAEIV-----------GFDLRLDPARRETLEMVVRDLFPGGGDLSQATFWTGLRPM 358 (416)
T ss_pred eEEec-cc-CEEEeecCCceEEEEEEEec-----------CCCCCCCHHHHHHHHHHHHHHCCCcccccccceeeccCCC
Confidence 11111 12 22334457889999754432 2233455677888899999999999988999999999998
Q ss_pred ecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 237 LSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
++|..|+||..+ .+|+|+++|++|+||+++|++|+++|++|+
T Consensus 359 -----t~D~~PiIG~~~---~~gl~~a~G~~g~G~~~ap~~g~~la~li~ 400 (416)
T PRK00711 359 -----TPDGTPIVGATR---YKNLWLNTGHGTLGWTMACGSGQLLADLIS 400 (416)
T ss_pred -----CCCCCCEeCCcC---CCCEEEecCCchhhhhhhhhHHHHHHHHHc
Confidence 456778999875 489999999999999999999999999985
No 6
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.98 E-value=1.8e-30 Score=242.28 Aligned_cols=247 Identities=20% Similarity=0.255 Sum_probs=186.7
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY 80 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~ 80 (287)
..++.|++ +++|+++|+++++|.+. ..+|+|+|++|++||.+++.+|.+.|+++|++|+++++|+++...++.|.|.
T Consensus 155 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~ 233 (410)
T PRK12409 155 LLAEGGLE-RRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLT 233 (410)
T ss_pred HHHhcCCC-eEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEE
Confidence 45677896 99999999999999985 5789999999999999999999999999999999999999998877777765
Q ss_pred ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCC-CCceeeeCC
Q 023079 81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAP-FKHLIYPIP 159 (287)
Q Consensus 81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~-~~~~i~~~~ 159 (287)
+.++.. .+..+++|++||+|+|+|+..+++++ +..+++.| .+|+++.+....... .....+...
T Consensus 234 ~~~~~~----------~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~i~p----~~g~~~~~~~~~~~~~~~~p~~~~~ 298 (410)
T PRK12409 234 VQPSAE----------HPSRTLEFDGVVVCAGVGSRALAAML-GDRVNVYP----VKGYSITVNLDDEASRAAAPWVSLL 298 (410)
T ss_pred EEcCCC----------CccceEecCEEEECCCcChHHHHHHh-CCCCcccc----CCceEEEeecCCccccccCCceeee
Confidence 543310 00126999999999999999999887 45556666 899887764321100 000001111
Q ss_pred CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079 160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~ 239 (287)
+.... +...+..+|++++|++.++. ..+...+.+.++.+++.+.++||.|++..+. .|+|+|++
T Consensus 299 ~~~~~-~~~~~~~~~~~~igg~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~-~w~G~r~~--- 362 (410)
T PRK12409 299 DDSAK-IVTSRLGADRFRVAGTAEFN-----------GYNRDIRADRIRPLVDWVRRNFPDVSTRRVV-PWAGLRPM--- 362 (410)
T ss_pred ecCCc-EEEEecCCCcEEEEEEEEec-----------CCCCCCCHHHHHHHHHHHHHhCCCCCccccc-eecccCCC---
Confidence 11111 22223345778888765532 2233455678899999999999999988766 69999998
Q ss_pred CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
++|..|+||+.+ .+|+|+++|++|+|+++||++|+++|++|.
T Consensus 363 --t~D~~PiiG~~~---~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~ 404 (410)
T PRK12409 363 --MPNMMPRVGRGR---RPGVFYNTGHGHLGWTLSAATADLVAQVVA 404 (410)
T ss_pred --CCCCCCeeCCCC---CCCEEEecCCcccchhhcccHHHHHHHHHc
Confidence 456778999864 589999999999999999999999999985
No 7
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.97 E-value=2.2e-30 Score=238.72 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=191.0
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV 79 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V 79 (287)
..++.|++ +++++++++++++|.++ ..+|+|.|++|++||.+++.++++.+.++|++++++++|+++..+++.+.|
T Consensus 106 ~~~~~g~~-~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 184 (376)
T PRK11259 106 SARQHGLP-HEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTV 184 (376)
T ss_pred HHHHcCCC-cEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEE
Confidence 35678897 99999999999999885 467999999999999999999999999999999999999999998888889
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC--CCCceeee
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA--PFKHLIYP 157 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~--~~~~~i~~ 157 (287)
+|++| .++||+||+|+|+|+..+++++ ..++.| .+++++.+++.... ..+...+.
T Consensus 185 ~~~~g----------------~~~a~~vV~A~G~~~~~l~~~~---~~~i~~----~~~~~~~~~~~~~~~~~~~~p~~~ 241 (376)
T PRK11259 185 TTADG----------------TYEAKKLVVSAGAWVKDLLPPL---ELPLTP----VRQVLAWFQADGRYSEPNRFPAFI 241 (376)
T ss_pred EeCCC----------------EEEeeEEEEecCcchhhhcccc---cCCceE----EEEEEEEEecCCccCCccCCCEEE
Confidence 99888 7999999999999999988654 344455 88888888653111 11111111
Q ss_pred CCCCCCceeEEeeecCCc-EEECCCccccCCccccccccccc-ccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079 158 IPEDGGLGVHVTLDLDGQ-IKFGPDVEWIDGIDDTLSFLNRF-DYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP 235 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~-l~iG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~ 235 (287)
.....+..+|++|..+++ +++|++....... + ++.. .....++..+.+.+.+.++||.+.. +.+.|+|.|+
T Consensus 242 ~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~ 314 (376)
T PRK11259 242 WEVPDGDQYYGFPAENGPGLKIGKHNGGQEIT-S----PDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYT 314 (376)
T ss_pred EecCCCceeEeccCCCCCceEEEECCCCCCCC-C----hhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEecc
Confidence 111113336778887888 9998765411000 0 0111 1122255688999999999998876 8888999999
Q ss_pred eecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 236 KLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
. ++|..|+||..+ +.+|+|+++|++|+|+|++|++|+++|++|+
T Consensus 315 ~-----t~D~~P~ig~~~--~~~gl~~~~G~~g~G~~~ap~~g~~la~li~ 358 (376)
T PRK11259 315 N-----TPDEHFIIDTLP--GHPNVLVASGCSGHGFKFASVLGEILADLAQ 358 (376)
T ss_pred c-----CCCCCceeecCC--CCCCEEEEecccchhhhccHHHHHHHHHHHh
Confidence 7 457788999987 6899999999999999999999999999986
No 8
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.97 E-value=4.2e-30 Score=247.62 Aligned_cols=253 Identities=20% Similarity=0.285 Sum_probs=193.6
Q ss_pred ccchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-E
Q 023079 2 KRGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-N 78 (287)
Q Consensus 2 ~~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~ 78 (287)
+.++++|++ +++|+++|+.+++|.++ ..+|+++| +|++||.+++.+++..|.++|++++++++|+++.++++++ .
T Consensus 107 ~~~~~~Gi~-~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~g 184 (546)
T PRK11101 107 RACEEAGIE-AEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCG 184 (546)
T ss_pred HHHHHcCCC-cEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEE
Confidence 345778997 99999999999999996 67999999 5899999999999999999999999999999999887765 3
Q ss_pred EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeC
Q 023079 79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPI 158 (287)
Q Consensus 79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~ 158 (287)
|++.+..+ ++..+|+|++||||||+|+.+|+++. +.+.++.| +||++++++.... ..+++.+
T Consensus 185 v~v~d~~~----------g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~~i~p----~kG~~lv~~~~~~---~~vi~~~ 246 (546)
T PRK11101 185 VRVRDHLT----------GETQEIHAPVVVNAAGIWGQHIAEYA-DLRIRMFP----AKGSLLIMDHRIN---NHVINRC 246 (546)
T ss_pred EEEEEcCC----------CcEEEEECCEEEECCChhHHHHHHhc-CCCCceee----cceEEEEECCccC---ceeEecc
Confidence 55432211 11247999999999999999999988 55666666 9999999976421 1233333
Q ss_pred CCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceec
Q 023079 159 PEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLS 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~ 238 (287)
+.+... .++.| .++.+++|+|.+..+. .+..+..++++.++.+++.+.+++|.|...++++.|+|+||+..
T Consensus 247 ~~~~~~-~~~vp-~~~~~liGtT~~~~~~-------~~~~~~~~t~~~i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~ 317 (546)
T PRK11101 247 RKPADA-DILVP-GDTISLIGTTSTRIDY-------DQIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYAGVRPLVA 317 (546)
T ss_pred CCCCCC-CEEEe-cCCEEEEeeCCCCccC-------CCcCCCCCCHHHHHHHHHHHHHhCCCCCccCEEEEEEEeccCCC
Confidence 332222 34555 4677899998765321 02234677889999999999999999999999999999999864
Q ss_pred CCCCC-----CC-CeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 239 GPRQS-----PI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 239 ~~~~~-----~~-~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+++.+ .+ .++++..+.++.+|++.++|. ++|+++++|+.++|++.
T Consensus 318 ~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG---kltt~r~~Ae~v~d~v~ 368 (546)
T PRK11101 318 SDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG---KLMTYRLMAEWATDAVC 368 (546)
T ss_pred CCCCCcccccCCCeEEeecccccCCCCeEEEECC---hHHHHHHHHHHHHHHHH
Confidence 32111 12 357775432257899999983 79999999999999875
No 9
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.97 E-value=5e-31 Score=243.94 Aligned_cols=234 Identities=21% Similarity=0.207 Sum_probs=188.5
Q ss_pred hhcCCC--eeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec
Q 023079 5 TANGVH--GLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS 82 (287)
Q Consensus 5 ~~~g~~--~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~ 82 (287)
++.+++ .+++++.+|+++++|.....+|+|.|++|++||..++.+|++++++ |++|+++++|++++.++++|.|+|.
T Consensus 94 ~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~ 172 (381)
T TIGR03197 94 EQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDA 172 (381)
T ss_pred HhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeC
Confidence 334553 1468999999999875446789999999999999999999999999 9999999999999988888999998
Q ss_pred CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCC-CCCCceeeeCCCC
Q 023079 83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKV-APFKHLIYPIPED 161 (287)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~~ 161 (287)
+|. .++||+||+|+|+|+..+.+++ .+++.| .+|+++.+..... ..++..+
T Consensus 173 ~g~---------------~~~a~~vV~a~G~~~~~l~~~~---~~pi~p----~rg~~~~~~~~~~~~~~~~~~------ 224 (381)
T TIGR03197 173 NGE---------------VIAASVVVLANGAQAGQLAQTA---HLPLRP----VRGQVSHLPATEALSALKTVL------ 224 (381)
T ss_pred CCC---------------EEEcCEEEEcCCcccccccccc---cCCccc----cccceeeccCCCcccccCceE------
Confidence 882 4899999999999999987653 445566 9999988865311 0111111
Q ss_pred CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-----CCCcccccccccce
Q 023079 162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-----DGSLQPSYAGIRPK 236 (287)
Q Consensus 162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~~~G~r~~ 236 (287)
..+.|++|..+|++++|.+.+... .+...+.+..+.+++.+.++||.+. +.++.+.|+|+||.
T Consensus 225 -~~~~y~~p~~~g~~~iG~t~~~~~-----------~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~ 292 (381)
T TIGR03197 225 -CYDGYLTPANNGEHCIGASYDRND-----------DDLALREADHAENLERLAECLPALAWASEVDISALQGRVGVRCA 292 (381)
T ss_pred -eCCceecccCCCceEeecccCCCC-----------CCCCcCHHHHHHHHHHHHHhCcccchhhccCccccCceEEEecc
Confidence 122588898889999997765421 2334456678899999999999997 78899999999998
Q ss_pred ecCCCCCCCCeEEecCCCCC-------------------------CCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 237 LSGPRQSPIDFVIQGDDTHG-------------------------VPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 237 ~~~~~~~~~~~~i~~~~~~~-------------------------~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+ +|..|+||..+ + .+|+|+++|++|+||+++|++|+++|++|+
T Consensus 293 t-----~D~~Piig~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~G~~~ap~~g~~la~~i~ 360 (381)
T TIGR03197 293 S-----PDHLPLVGAVP--DFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSRGLTSAPLAAEILAAQIC 360 (381)
T ss_pred C-----CCcCccCCCCC--CHHHHHHHHHHhcccccccccccCCCCCCeEEEecccchHHHHHHHHHHHHHHHHh
Confidence 4 56667999876 5 789999999999999999999999999985
No 10
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.97 E-value=4.6e-30 Score=236.23 Aligned_cols=258 Identities=37% Similarity=0.520 Sum_probs=220.6
Q ss_pred CccchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E
Q 023079 1 MKRGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M 77 (287)
Q Consensus 1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~ 77 (287)
|++++++|+.+.+.+|++++++++|.+. ..+|+|.|..|.|||..++.+|++.|+++|++++.+++|++|++.+++ +
T Consensus 108 ~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~ 187 (429)
T COG0579 108 YERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVF 187 (429)
T ss_pred HHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceE
Confidence 5788999998899999999999999998 899999999999999999999999999999999999999999998884 5
Q ss_pred EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC-CcccCCccccceEEEEEcCCCCCCCCceee
Q 023079 78 NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIY 156 (287)
Q Consensus 78 ~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~ 156 (287)
.+.|.+|. + +++|+.||||||.+|..|+++.+... ....| ++|+|+++++.....+++.+|
T Consensus 188 ~~~~~~g~-------------~-~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P----~~G~y~~~~~~~~~~~~~~Iy 249 (429)
T COG0579 188 VLNTSNGE-------------E-TLEAKFVINAAGLYADPLAQMAGIPEDFKIFP----VRGEYLVLDNEVKALLRHKIY 249 (429)
T ss_pred EEEecCCc-------------E-EEEeeEEEECCchhHHHHHHHhCCCcccccCc----cceEEEEEcccccccccceee
Confidence 67888882 1 29999999999999999999996333 56677 999999998854456789999
Q ss_pred eCCCCC--CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCC-CCCcccccccc
Q 023079 157 PIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR-DGSLQPSYAGI 233 (287)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~-~~~i~~~~~G~ 233 (287)
++|++. +.|++++++.||++++||++.+.+-. +..+...+.+..+.+.....+++|++. .......++|.
T Consensus 250 ~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~-------~k~~~~~~~d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~ 322 (429)
T COG0579 250 PVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKF-------LKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGI 322 (429)
T ss_pred cCCCCCCCCCcceeecccCCeEEECCCcccchhh-------hccccccccchhhhHHHhhhhhcccccccccchhhhhee
Confidence 999987 78999999999999999999876211 223456677888889999999999998 66778889999
Q ss_pred cceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHH
Q 023079 234 RPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 285 (287)
Q Consensus 234 r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i 285 (287)
||+...+..+..+|++.... ..++.+...|.-+.|+|.+|++++.+.+++
T Consensus 323 r~~~~~~~~~~~~~~ip~~~--~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~ 372 (429)
T COG0579 323 RPILKEPRLPALDFIIPEAK--DEDWFINVAGIRSQGLTADPAIAGGVLELL 372 (429)
T ss_pred ccccccccccccceeccccc--CCCCceeeeeEEccccccChhHhhhHhhhc
Confidence 99874434556788887554 678999999999999999999999888765
No 11
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.97 E-value=6.9e-30 Score=241.85 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=183.8
Q ss_pred chhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC
Q 023079 4 GTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE 83 (287)
Q Consensus 4 ~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~ 83 (287)
.++.|++.+++|+++|+.+++|.....+|+|+|++|++||.+++.+|++.|+++|++|+++++|++++. ++.+.|+|++
T Consensus 143 ~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~ 221 (460)
T TIGR03329 143 LERRGINSWQRLSEGELARRTGSARHLEGFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPD 221 (460)
T ss_pred HHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCC
Confidence 456787536999999999999965567899999999999999999999999999999999999999975 5567889988
Q ss_pred CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeee----CC
Q 023079 84 SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYP----IP 159 (287)
Q Consensus 84 g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~----~~ 159 (287)
| +++||+||+|+|+|+..+++.++ ..+.| .+++++++.+. ...+....++ +.
T Consensus 222 g----------------~v~A~~VV~Atga~s~~l~~~~~---~~~~p----~~~~~~~t~pl-~~~~~~~~~~~~~~~~ 277 (460)
T TIGR03329 222 G----------------QVTADKVVLALNAWMASHFPQFE---RSIAI----VSSDMVITEPA-PDLLAATGLDHGTSVL 277 (460)
T ss_pred c----------------EEECCEEEEcccccccccChhhc---CeEEE----eccceEecCCC-cHHHHhhcCCCCceEe
Confidence 8 89999999999999999887662 22334 55666555432 1111111111 11
Q ss_pred CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079 160 EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~ 239 (287)
+......|+++..+|++++|........... .++ .........+.+.+.+.++||.|.+..+.+.|+|.+++
T Consensus 278 d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~--- 349 (460)
T TIGR03329 278 DSRIFVHYYRSTPDGRLMLGKGGNTFAYGGR----MLP-VFNQPSPYEALLTRSLRKFFPALAEVPIAASWNGPSDR--- 349 (460)
T ss_pred cchhhhhheeECCCCcEEEcCCccccccCcc----ccc-ccCCchHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC---
Confidence 1111225788888899999864321110000 000 01112234567899999999999999999999999998
Q ss_pred CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
++|..|+||+.+ ..+|+|+++|++|+|++++|++|+++|++|+
T Consensus 350 --t~D~~P~iG~~~--~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~ 392 (460)
T TIGR03329 350 --SVTGLPFFGRLN--GQPNVFYGFGYSGNGVAPSRMGGQILSSLVL 392 (460)
T ss_pred --CCCCCceeeeec--CCCCEEEEeCcCCCChhHHHHHHHHHHHHhc
Confidence 456778999886 5789999999999999999999999999875
No 12
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.97 E-value=7.6e-29 Score=228.84 Aligned_cols=249 Identities=14% Similarity=0.127 Sum_probs=186.5
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEE
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNV 79 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V 79 (287)
..++.|++ +++|+++|+.+++|.++ ..+|+|.|.+|++||.+++.+|.+.++++|++++++++|+++..+++.+.|
T Consensus 102 ~~~~~g~~-~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v 180 (380)
T TIGR01377 102 TLSRHGLE-HELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTV 180 (380)
T ss_pred HHHHcCCC-eEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEE
Confidence 45678997 99999999999999985 456999999999999999999999999999999999999999988888888
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCC-CceeeeC
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPF-KHLIYPI 158 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~-~~~i~~~ 158 (287)
+|.++ +++||+||+|+|.|+..+.+++ +..+++.| .+++...+........ .+..+|.
T Consensus 181 ~~~~~----------------~i~a~~vV~aaG~~~~~l~~~~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~ 239 (380)
T TIGR01377 181 KTTKG----------------SYQANKLVVTAGAWTSKLLSPL-GIEIPLQP----LRINVCYWREKEPGSYGVSQAFPC 239 (380)
T ss_pred EeCCC----------------EEEeCEEEEecCcchHHHhhhc-ccCCCceE----EEEEEEEEecCCccccCccCCCCE
Confidence 88777 7999999999999999999888 45555555 7777655543211100 0000111
Q ss_pred C--CCCCceeEEeeecCC-cEEECCCcc-ccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccc
Q 023079 159 P--EDGGLGVHVTLDLDG-QIKFGPDVE-WIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIR 234 (287)
Q Consensus 159 ~--~~~~~~~~~~~~~~g-~l~iG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r 234 (287)
. .....++|++|..++ .+++|.... ....+. ....+...+...++.+.+.+.+++|.+.... ...|+|.|
T Consensus 240 ~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~ 313 (380)
T TIGR01377 240 FLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPD-----ERDCPFGADIEDVQILRKFVRDHLPGLNGEP-KKGEVCMY 313 (380)
T ss_pred EEEeCCCCceEecCCCCCCceEEEEeCCCCccCcc-----cccCCCCCCHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEe
Confidence 0 011223777777543 455553221 100000 0111223556778999999999999998644 56789999
Q ss_pred ceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 235 PKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+. +||..|+||+.+ +.+|+|+++|++|+|||++|++|+++||+|.
T Consensus 314 ~~-----t~D~~piIg~~p--~~~~l~va~G~~g~G~~~~p~~g~~la~li~ 358 (380)
T TIGR01377 314 TN-----TPDEHFVIDLHP--KYDNVVIGAGFSGHGFKLAPVVGKILAELAM 358 (380)
T ss_pred cc-----CCCCCeeeecCC--CCCCEEEEecCCccceeccHHHHHHHHHHHh
Confidence 87 467788999998 6899999999999999999999999999985
No 13
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.97 E-value=3.3e-30 Score=234.39 Aligned_cols=249 Identities=25% Similarity=0.305 Sum_probs=192.4
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-E
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-V 79 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V 79 (287)
..+..+++ +++++++++.+++|.+. ...|++.|++|++||.+++.+|.+.++++|++|+++++|+++..++++|. |
T Consensus 105 ~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv 183 (358)
T PF01266_consen 105 RLRRNGIP-YELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGV 183 (358)
T ss_dssp HHHHTTTT-EEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEE
T ss_pred cccccccc-ccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccc
Confidence 45678886 99999999999999986 57899999999999999999999999999999999999999999999998 9
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCC
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIP 159 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 159 (287)
.|++| +++||+||||+|+|+..|++++ +.+.++.| .+++++.+..... .....+...+
T Consensus 184 ~~~~g----------------~i~ad~vV~a~G~~s~~l~~~~-~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~ 241 (358)
T PF01266_consen 184 RTSDG----------------EIRADRVVLAAGAWSPQLLPLL-GLDLPLRP----VRGQVLVLEPPES-PLAPAILFPP 241 (358)
T ss_dssp EETTE----------------EEEECEEEE--GGGHHHHHHTT-TTSSTEEE----EEEEEEEEEGCCS-GSSSEEEEEE
T ss_pred ccccc----------------ccccceeEecccccceeeeecc-cccccccc----cceEEEEEccCCc-cccccccccc
Confidence 99999 7999999999999999999888 44444455 8999999876422 2222222211
Q ss_pred --CCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCccccccccccee
Q 023079 160 --EDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKL 237 (287)
Q Consensus 160 --~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~ 237 (287)
.....+.+++|.. |.+++|+............. ....+...+.+ ++.+++.+.+++|.+.+.++.+.|+|+||++
T Consensus 242 ~~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t 318 (358)
T PF01266_consen 242 VIFGPSDGVYIRPRP-GGVLIGTADGNYDPGPSPED-SSGEDPDVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFT 318 (358)
T ss_dssp ECESSCTEEEEEEET-TEEEEEESECEEEESSSHHH-HSHHHHHHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEE
T ss_pred ccccccccceecccc-cccccccccccccccccccc-cccccccccHH-HHHhHHHHHHHHHHhhhccccccccceeeec
Confidence 1123557888887 88888843321110000000 00111122334 7899999999999999999999999999995
Q ss_pred cCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHH
Q 023079 238 SGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 284 (287)
Q Consensus 238 ~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~ 284 (287)
++..++|++.+ ..+|+|+++|++|+|++++|++|+++||+
T Consensus 319 -----~d~~p~ig~~~--~~~~l~~~~g~~~~G~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 319 -----PDGRPIIGELP--GSPNLYLAGGHGGHGFTLAPGLAELLADL 358 (358)
T ss_dssp -----TTSECEEEEES--SEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred -----cCCCeeeeecC--CCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence 45668999976 67899999999999999999999999986
No 14
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=219.28 Aligned_cols=270 Identities=40% Similarity=0.532 Sum_probs=224.3
Q ss_pred CccchhcCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe---E
Q 023079 1 MKRGTANGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC---M 77 (287)
Q Consensus 1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~---~ 77 (287)
|+++.++|+++.++++..|+.+++|..+...|+++|..|++|-..++.++.+..+..|.++.++-++.++....+. +
T Consensus 153 ~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Y 232 (453)
T KOG2665|consen 153 MHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSY 232 (453)
T ss_pred HHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCCCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999876543 3
Q ss_pred EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC-CCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079 78 NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY 156 (287)
Q Consensus 78 ~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~ 156 (287)
.++..+|. +| +++...||-|+|..++.+.+..+ ..++.++| ++|.++.+.+.....+++.||
T Consensus 233 pivv~ngk-~e------------e~r~~~~vtc~gl~sdr~aa~sgc~~dPriVp----frG~ylll~~ek~h~vk~niy 295 (453)
T KOG2665|consen 233 PIVVLNGK-GE------------EKRTKNVVTCAGLQSDRCAALSGCELDPRIVP----FRGEYLLLKPEKLHLVKGNIY 295 (453)
T ss_pred ceEEecCc-cc------------eeEEeEEEEeccccHhHHHHHhCCCCCCeeee----ccchhhhcChHHhccccCcee
Confidence 34444443 34 79999999999999999988874 23456677 999999987764456788999
Q ss_pred eCCCCC--CceeEEeeecCCcEEECCCccc---------cC--C---------cccccccccccccCCChhhHHHHH---
Q 023079 157 PIPEDG--GLGVHVTLDLDGQIKFGPDVEW---------ID--G---------IDDTLSFLNRFDYSVNANRAERFY--- 211 (287)
Q Consensus 157 ~~~~~~--~~~~~~~~~~~g~l~iG~~~~~---------~~--~---------~~~~~~~~~~~~~~~~~~~~~~~~--- 211 (287)
|+|+++ ..|+|++|..+|.+++|+...- .+ . +.++..+.+.+++.+++...+.++
T Consensus 296 Pvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aq 375 (453)
T KOG2665|consen 296 PVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQ 375 (453)
T ss_pred eCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhh
Confidence 999987 6789999999999999987631 00 0 011112235678888887766665
Q ss_pred -HHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHhC
Q 023079 212 -PEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 287 (287)
Q Consensus 212 -~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~~ 287 (287)
+.+++|+|+|++.+|.+..+|+|++..|. +...+||+++....|..|+++++.+..++|.|.+.+||+++|+++++
T Consensus 376 vk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~~ 453 (453)
T KOG2665|consen 376 VKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFLN 453 (453)
T ss_pred hHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhcC
Confidence 89999999999999999999999776563 56678999987776678999999999999999999999999999875
No 15
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.96 E-value=7.1e-29 Score=231.92 Aligned_cols=253 Identities=21% Similarity=0.209 Sum_probs=194.9
Q ss_pred CccchhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-e
Q 023079 1 MKRGTANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-C 76 (287)
Q Consensus 1 ~~~~~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~ 76 (287)
|.+++++|+. .++||++|+++++|.|+ +.+|+|+|.||.+||..+|++|+++|++.|+.+.++|+|++|..+.+ .
T Consensus 142 ~S~g~a~g~e-~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~ 220 (856)
T KOG2844|consen 142 MSRGKAHGVE-SELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKF 220 (856)
T ss_pred HHhhhhccce-eeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCc
Confidence 4568899997 99999999999999996 78999999999999999999999999999999999999999998754 5
Q ss_pred EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee
Q 023079 77 MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY 156 (287)
Q Consensus 77 ~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~ 156 (287)
+.|+|.-| .|++.+||||||.|+..+.++. +.+.+++| ++.+|++..+-. .+...-.
T Consensus 221 ~gVeT~~G----------------~iet~~~VNaaGvWAr~Vg~m~-gvkvPL~p----~~H~YvvT~~Ie--Gi~s~t~ 277 (856)
T KOG2844|consen 221 GGVETPHG----------------SIETECVVNAAGVWAREVGAMA-GVKVPLVP----MHHAYVVTSRIE--GVSSLTR 277 (856)
T ss_pred cceeccCc----------------ceecceEEechhHHHHHhhhhc-CCccccee----eeeeEEEecccC--CccCCCc
Confidence 67999999 8999999999999999999888 46766666 888888876531 2211111
Q ss_pred eCCCCCCceeEEeeecCCcEEECCCccccCCcccccccc-cccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccc
Q 023079 157 PIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFL-NRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP 235 (287)
Q Consensus 157 ~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~ 235 (287)
+...+.+..+|++.. .+.+++|+.....-. .+-.+.. -...+..+.+..+..++.+.+++|.|++..|.+.-+|--.
T Consensus 278 p~irD~DgSvylR~~-~~gil~GGyE~n~i~-~egv~~~~~~~lqE~DWd~F~~hlesai~r~P~l~k~~i~~~v~gpe~ 355 (856)
T KOG2844|consen 278 PNIRDLDGSVYLRQQ-GDGILFGGYESNPIF-TEGVPPGFATGLQEPDWDHFEPHLEAAIERVPVLEKAGIKSLVNGPET 355 (856)
T ss_pred cceecccceEEEEec-CCceeccccccCcee-ccccCCccccccccccHhhhHHHHHHHHHhCchhhhcCccceecCccc
Confidence 111122333667665 455777765432100 0000000 0001124556667788999999999999998887676544
Q ss_pred eecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 236 KLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+ +||.-+++|+++ ++.|+|+++|+++.|++++-++|+.+++||.
T Consensus 356 f-----tPD~~p~mGe~p--~~~gy~v~~G~ns~G~~~~GG~Gk~la~wi~ 399 (856)
T KOG2844|consen 356 F-----TPDHLPIMGESP--EVRGYWVACGFNSAGLSFGGGCGKYLAEWII 399 (856)
T ss_pred c-----CCccccccCCCc--cccceEEeecCCccceeccCchhHHHHHHhh
Confidence 4 567788999998 8999999999999999999999999999985
No 16
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.96 E-value=2.4e-28 Score=224.61 Aligned_cols=229 Identities=18% Similarity=0.189 Sum_probs=171.9
Q ss_pred hhcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEE
Q 023079 5 TANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVY 80 (287)
Q Consensus 5 ~~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~ 80 (287)
+..|++ +++|+++|+++++|.+. ..+|++.|++|++||..++.+|++.+.++ |++|+++++|++++.. .|+
T Consensus 104 ~~~g~~-~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~ 178 (365)
T TIGR03364 104 EPAEYR-VELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVR 178 (365)
T ss_pred hhcCCC-eEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEE
Confidence 456776 99999999999999874 57899999999999999999999988775 9999999999999642 688
Q ss_pred ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee----
Q 023079 81 ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY---- 156 (287)
Q Consensus 81 t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~---- 156 (287)
|++| +++||+||+|+|+|+..|++.+ +...++.| ++++++.+++.....++..+.
T Consensus 179 t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-~~~~~~~p----~~~q~~~~~p~~~~~~~~~~~~~~~ 237 (365)
T TIGR03364 179 TSRG----------------DVHADQVFVCPGADFETLFPEL-FAASGVRR----CKLQMMRTAPQPRLPLGTALLTGLS 237 (365)
T ss_pred eCCC----------------cEEeCEEEECCCCChhhhCcch-hhccCcce----EEEEeeeccCCCCCcCCccccccce
Confidence 8888 6899999999999999988766 33455666 899988876542111111100
Q ss_pred ----------------------eCCC--CCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHH
Q 023079 157 ----------------------PIPE--DGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYP 212 (287)
Q Consensus 157 ----------------------~~~~--~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (287)
+.|. ..+.++|++|..+|++++|++.++... .+...+....+.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~----------~~~~~~~~~~~~l~~ 307 (365)
T TIGR03364 238 LRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLA----------PDPFDDEEIDNLILA 307 (365)
T ss_pred eeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCC----------CCCcchHHHHHHHHH
Confidence 0011 113457889998999999987664321 011113344456777
Q ss_pred HHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHH
Q 023079 213 EIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE 279 (287)
Q Consensus 213 ~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~ 279 (287)
.+.+++ .+.+.++.+.|+|+||++ ++..++++.. .+|+|+++|++|+|++++|++|+
T Consensus 308 ~~~~~~-~l~~~~~~~~w~G~r~~t-----~d~~~v~~~~----~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 308 EAKTIL-GLPDLDIVERWQGVYASS-----PPAPIFLERP----DDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred HHHHhc-CCCCCceEEEEeEEecCC-----CCCCceecCC----CCCeEEEEecCCCcccccccccC
Confidence 777766 688889999999999984 4444566532 48999999999999999999986
No 17
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.96 E-value=3.6e-27 Score=230.03 Aligned_cols=247 Identities=20% Similarity=0.213 Sum_probs=186.0
Q ss_pred CCCeeeeeCHHHHHhhCCCcc-c-----ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-E
Q 023079 8 GVHGLRMLEGFEAMKMEPELQ-C-----VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-N 78 (287)
Q Consensus 8 g~~~~~~L~~~ei~~~~P~l~-~-----~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~ 78 (287)
+.+..++|+++|+.+++|.|+ . ..|.+.+.||++||.+++.+|++.|+++|++++++++|+++..+ ++++ .
T Consensus 190 ~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~g 269 (627)
T PLN02464 190 LLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVG 269 (627)
T ss_pred CCCCceEECHHHHHHhCCCCCccccccceeEEEEecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEE
Confidence 443379999999999999996 2 44445677899999999999999999999999999999999876 3443 3
Q ss_pred EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC-CcccCCccccceEEEEEcCCCCCCCCceeee
Q 023079 79 VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYP 157 (287)
Q Consensus 79 V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~ 157 (287)
|+..+..+ +++++++|+.||||+|+|+..|.+++++.. ..+.| .+|.|++++..........+++
T Consensus 270 V~v~d~~t----------g~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p----~kG~hlvl~~~~~~~~~~~i~~ 335 (627)
T PLN02464 270 ARVRDNLT----------GKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICP----SSGVHIVLPDYYSPEGMGLIVP 335 (627)
T ss_pred EEEEECCC----------CcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEe----eeeEEEecccccCCCCceEEec
Confidence 44422110 113468999999999999999999884222 22445 9999999864311111134444
Q ss_pred CCCCCCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccce
Q 023079 158 IPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPK 236 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~ 236 (287)
.. ..+..+++.|. +|++++|+|.+..+ .+.+...++++++.+++.++++|| .+...++.+.|+|+||+
T Consensus 336 ~~-~dgr~~~~~P~-~g~~liGtTd~~~~---------~~~~~~~t~~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl 404 (627)
T PLN02464 336 KT-KDGRVVFMLPW-LGRTVAGTTDSKTP---------ITMLPEPHEDEIQFILDAISDYLNVKVRRSDVLSAWSGIRPL 404 (627)
T ss_pred CC-CCCCEEEEEec-CCcEEEecCCCCCC---------CCCCCCCCHHHHHHHHHHHHHhhCCCCChhhEEEEEEeEEee
Confidence 32 23566788887 88999998887643 234556778999999999999998 79999999999999999
Q ss_pred ecCC-----CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 237 LSGP-----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 237 ~~~~-----~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+.++ ..+.++++|-... +|++.++|. .||+++.+|+.+.|.+.
T Consensus 405 ~~d~~~~~~~~~sr~~~i~~~~----~gli~i~GG---k~Tt~R~mAe~~~d~~~ 452 (627)
T PLN02464 405 AVDPSAKSTESISRDHVVCEEP----DGLVTITGG---KWTTYRSMAEDAVDAAI 452 (627)
T ss_pred ccCCCCCcccccCCceEEEecC----CCeEEEECC---hHHHHHHHHHHHHHHHH
Confidence 8763 1234566664432 589988875 79999999999999875
No 18
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.96 E-value=5.4e-27 Score=216.80 Aligned_cols=244 Identities=23% Similarity=0.248 Sum_probs=189.4
Q ss_pred hcCCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEe
Q 023079 6 ANGVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYI 81 (287)
Q Consensus 6 ~~g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t 81 (287)
+.... .++++..++.+++|.+. ..+|+|.|+++++||..++.+|++.++++| +.+..+++|..++..++.+.|.|
T Consensus 116 ~~~~~-~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t 194 (387)
T COG0665 116 AAGED-AELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVET 194 (387)
T ss_pred hcCCC-ceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEe
Confidence 34443 47899999999999985 579999999999999999999999999999 56777999999887434678999
Q ss_pred cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCC
Q 023079 82 SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPED 161 (287)
Q Consensus 82 ~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (287)
.+| +++|++||+|+|+|+..+....+....++.| .+++++.+.+................
T Consensus 195 ~~g----------------~i~a~~vv~a~G~~~~~l~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (387)
T COG0665 195 DGG----------------TIEADKVVLAAGAWAGELAATLGELPLPLRP----VRGQALTTEPPEGLLADGLAPVVLVV 254 (387)
T ss_pred CCc----------------cEEeCEEEEcCchHHHHHHHhcCCCcCcccc----ccceEEEecCCCccccccccceEEEe
Confidence 999 7999999999999999999888414455566 99999988764221111100001111
Q ss_pred CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCC-hh-hHHHHHHHHhhhCCCCCCCCcccccccccceecC
Q 023079 162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVN-AN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSG 239 (287)
Q Consensus 162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~ 239 (287)
...+.|++|..+|++++|.+.+.... .+.... .+ ...++++.+.+++|.+....+.+.|+|.|+.+
T Consensus 255 ~~~~~y~~~~~~g~~~~g~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t-- 322 (387)
T COG0665 255 DDGGGYIRPRGDGRLRVGGTDEEGGD----------DPSDPEREDLVIAELLRVARALLPGLADAGIEAAWAGLRPPT-- 322 (387)
T ss_pred cCCceEEEEcCCCcEEEeecccccCC----------CCccccCcchhHHHHHHHHHHhCccccccccceeeeccccCC--
Confidence 24448889988999999988765310 111111 11 46789999999999999999999999999983
Q ss_pred CCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 240 PRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 240 ~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+||..++||... ..+|+|+++|++++|+|++|++|+++|++|+
T Consensus 323 --~pd~~P~iG~~~--~~~~l~~a~G~~~~G~~~~p~~g~~lA~li~ 365 (387)
T COG0665 323 --TPDGLPVIGRAA--PLPNLYVATGHGGHGFTLAPALGRLLADLIL 365 (387)
T ss_pred --CCCCCceeCCCC--CCCCEEEEecCCCcChhhccHHHHHHHHHHc
Confidence 257778999632 2689999999999999999999999999986
No 19
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.95 E-value=1.9e-27 Score=234.25 Aligned_cols=227 Identities=18% Similarity=0.134 Sum_probs=183.3
Q ss_pred eeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCC
Q 023079 12 LRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWD 91 (287)
Q Consensus 12 ~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~ 91 (287)
+++|+++|+.+++|.....+|+|.|++|++||..++.+|++.+++ |++++++++|+++..++++|.|+|++|.
T Consensus 376 ~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~------ 448 (662)
T PRK01747 376 ARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGT------ 448 (662)
T ss_pred hhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCc------
Confidence 688999999999875446789999999999999999999999999 9999999999999988888999988772
Q ss_pred CCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCceeeeCCCCCCceeEEee
Q 023079 92 GVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTL 170 (287)
Q Consensus 92 ~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~ 170 (287)
.++|++||+|+|+|+..+.+.. .+++.| +||+++.+...... .++..+ ..+.|++|
T Consensus 449 ---------~~~ad~VV~A~G~~s~~l~~~~---~lpl~p----~RGqv~~~~~~~~~~~~~~~~-------~~~~Y~~p 505 (662)
T PRK01747 449 ---------LASAPVVVLANGHDAARFAQTA---HLPLYS----VRGQVSHLPTTPALSALKQVL-------CYDGYLTP 505 (662)
T ss_pred ---------EEECCEEEECCCCCcccccccc---CCCccc----ccceEEeecCCccccccCcee-------ECCceeCC
Confidence 5789999999999999887532 344555 99999887653111 111111 11368888
Q ss_pred -ecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCC-----CCCCcccccccccceecCCCCCC
Q 023079 171 -DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDL-----RDGSLQPSYAGIRPKLSGPRQSP 244 (287)
Q Consensus 171 -~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~~~G~r~~~~~~~~~~ 244 (287)
..+|.+++|++.+.. ..+...+.+..+.+++.+.+++|.+ .+..+...|+|+|+.+ +|
T Consensus 506 ~~~~g~~~iGat~~~~-----------~~~~~~~~~~~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~t-----pD 569 (662)
T PRK01747 506 QPANGTHCIGASYDRD-----------DTDTAFREADHQENLERLAECLPQALWAKEVDVSALQGRVGFRCAS-----RD 569 (662)
T ss_pred CCCCCceEeCcccCCC-----------CCCCCCCHHHHHHHHHHHHHhCCCchhhhccCccccCceEEEeccC-----CC
Confidence 778899999876542 2334456777888999999999987 5667889999999994 56
Q ss_pred CCeEEec----------------------CCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 245 IDFVIQG----------------------DDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 245 ~~~~i~~----------------------~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
..|+||. .+ ..+|+|+++|++|+||++||++|+++|++|+
T Consensus 570 ~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~--~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~ 631 (662)
T PRK01747 570 RLPMVGNVPDEAATLAEYAALANQQPARDAP--RLPGLYVAGALGSRGLCSAPLGAELLASQIE 631 (662)
T ss_pred cccccCCCCCHHHHHHHHHhhhhccccccCC--CCCCeEEEecccccHHHHHHHHHHHHHHHHh
Confidence 6779998 33 5689999999999999999999999999985
No 20
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=9.5e-27 Score=222.56 Aligned_cols=251 Identities=17% Similarity=0.200 Sum_probs=187.6
Q ss_pred cCCCeeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcc
Q 023079 7 NGVHGLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKN 86 (287)
Q Consensus 7 ~g~~~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~ 86 (287)
++++..+.++.+++.+.+|......+.+.+.+|++||.+++.+++..|+++|++++++++|+++..+++.|.|++.++.
T Consensus 118 ~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~- 196 (502)
T PRK13369 118 KRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDAD- 196 (502)
T ss_pred CCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-
Confidence 3454578888888877777323344456678899999999999999999999999999999999988878888776652
Q ss_pred cccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC--CcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCc
Q 023079 87 LRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD--NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL 164 (287)
Q Consensus 87 ~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~--~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (287)
+++++++|+.||||+|+|++++.+++.+.. ..+.| .||++++++.... ....+..+...+.
T Consensus 197 ----------g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p----~kG~~lv~~~~~~---~~~~~~~~~~dgr 259 (502)
T PRK13369 197 ----------GETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRL----VKGSHIVVPKFWD---GAQAYLFQNPDKR 259 (502)
T ss_pred ----------CCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEE----eeEEEEEeCCccC---CCceEEEeCCCCe
Confidence 224579999999999999999988552322 33445 9999999864321 1111222222234
Q ss_pred eeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccceecCC---
Q 023079 165 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP--- 240 (287)
Q Consensus 165 ~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~~~~~--- 240 (287)
-+++.|..++..++|++....+. ++.+..++++.++++++.++++|| .|+..++++.|+|+||+..+.
T Consensus 260 ~~~i~P~~~~~~liGtTd~~~~~--------~~~~~~~~~~~i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~ 331 (502)
T PRK13369 260 VIFANPYEGDFTLIGTTDIAYEG--------DPEDVAADEEEIDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGN 331 (502)
T ss_pred EEEEEEecCCEEEEEecCccccC--------CCCCCCCCHHHHHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCC
Confidence 35778876678899988764321 234667889999999999999996 899999999999999998653
Q ss_pred -CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 241 -RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 241 -~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
....++|.|-.+..++.+|++.++| .|+|+++++|+.+++.+.
T Consensus 332 ~~~~sR~~~i~~~~~~g~~gli~i~G---gk~Tt~r~~Ae~v~d~~~ 375 (502)
T PRK13369 332 PSAVTRDYVFDLDAETGGAPLLSVFG---GKITTFRKLAEHALERLK 375 (502)
T ss_pred cccCCcceEEeeccccCCCCeEEEeC---ChHhhHHHHHHHHHHHHH
Confidence 1224677765442124579999998 389999999999999875
No 21
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.95 E-value=1.1e-25 Score=211.22 Aligned_cols=247 Identities=21% Similarity=0.261 Sum_probs=193.3
Q ss_pred CCeeeeeCHHHHHhhCCCcc--c-ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCc
Q 023079 9 VHGLRMLEGFEAMKMEPELQ--C-VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESK 85 (287)
Q Consensus 9 ~~~~~~L~~~ei~~~~P~l~--~-~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~ 85 (287)
.+..+.++.++..+++|.++ . .||++. .|+++|+.+|+...++.|..+|++++++++|+++.++++-|.|+..+..
T Consensus 127 ~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y-~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~ 205 (532)
T COG0578 127 LPASRVLDPKEALPLEPALKKDGLKGAFRY-PDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE 205 (532)
T ss_pred CCcceecchhhhhhcCcccchhhccceEEE-ccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC
Confidence 34588999999999999996 3 445555 5779999999999999999999999999999999999886678776653
Q ss_pred ccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCC---CcccCCccccceEEEEEcCCCCCCCCceeeeCCCCC
Q 023079 86 NLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD---NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG 162 (287)
Q Consensus 86 ~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~---~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (287)
+ ++++.|+|+.||||||+|+.++.++.+... .++.| +||.|++++.. .......++.++.+
T Consensus 206 t----------g~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~----skGsHlVv~~~-~~~~~a~~~~~~~d- 269 (532)
T COG0578 206 T----------GETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRP----SKGSHLVVDKK-FPINQAVINRCRKD- 269 (532)
T ss_pred C----------CcEEEEEcCEEEECCCccHHHHHHhhcccCCCCcccee----ccceEEEeccc-CCCCceEEeecCCC-
Confidence 2 347889999999999999999999884221 24556 99999999872 22233455666542
Q ss_pred CceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHh-hhCCCCCCCCcccccccccceecCC-
Q 023079 163 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIR-KYYPDLRDGSLQPSYAGIRPKLSGP- 240 (287)
Q Consensus 163 ~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~i~~~~~G~r~~~~~~- 240 (287)
+.-+.++| .++..+||+|+...+. ++.++.+++++++.+++.++ .+-|.++..+|.++|+|+||+..+-
T Consensus 270 ~r~~f~iP-~~~~~liGTTD~~~~~--------~~~~~~~~~eEidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~ 340 (532)
T COG0578 270 GRIVFAIP-YEGKTLIGTTDTDYDG--------DPEDPRITEEEIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGD 340 (532)
T ss_pred CceEEEec-CCCCEEeeccccccCC--------CcccCCCCHHHHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCC
Confidence 44344555 5777899999987653 35677889999999999999 4448899999999999999998752
Q ss_pred ---CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 241 ---RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 241 ---~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
....+++.|-.+. +.+|++.++|. ++|++..+|+.+++.+.
T Consensus 341 ~~~~~isR~~~l~~~~--~~~glltv~GG---KlTTyR~maE~a~d~v~ 384 (532)
T COG0578 341 DDTSAISRDHVLFDHA--ELAGLLTVAGG---KLTTYRKMAEDALDAVC 384 (532)
T ss_pred CchhhccCceEEEecC--CCCCeEEEecc---hhHHhHHHHHHHHHHHH
Confidence 1224566554443 35799999884 99999999999999864
No 22
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.95 E-value=9.8e-26 Score=215.67 Aligned_cols=233 Identities=18% Similarity=0.229 Sum_probs=174.7
Q ss_pred CCcc--cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeE
Q 023079 25 PELQ--CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTL 102 (287)
Q Consensus 25 P~l~--~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i 102 (287)
|.+. ..+| +.+.+|++||.+++.++++.|.++|++++++++|+++..+++.|.|++.+..+ +++.++
T Consensus 135 ~~L~~~l~g~-~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~----------g~~~~i 203 (508)
T PRK12266 135 SPLKPEITRG-FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTAT----------GKRYTV 203 (508)
T ss_pred CCcchhhcEE-EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCC----------CCEEEE
Confidence 5564 4566 45677899999999999999999999999999999998887778777654211 123579
Q ss_pred ecCEEEEcCCCCchHHHHHhCCC--CCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEeeecCCcEEECC
Q 023079 103 IPKLVVNSAGLSAPALAKRFIGL--DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGP 180 (287)
Q Consensus 103 ~a~~VV~aaG~~s~~l~~~~~~~--~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~l~iG~ 180 (287)
+|++||||+|+|++++.+++.+. ..++.| .+|++++++.... .....+++. ..+.-+++.|..+|..++|+
T Consensus 204 ~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p----~kG~~lvl~~~~~-~~~~~~~~~--~dgr~v~~~P~~~g~~liGt 276 (508)
T PRK12266 204 RARALVNAAGPWVKQFLDDGLGLPSPYGIRL----VKGSHIVVPRLFD-HDQAYILQN--PDGRIVFAIPYEDDFTLIGT 276 (508)
T ss_pred EcCEEEECCCccHHHHHhhccCCCCCcceee----eeeEEEEECCcCC-CCcEEEEeC--CCCCEEEEEEeCCCeEEEec
Confidence 99999999999999998754122 334445 9999999865321 111222332 23444667887788999998
Q ss_pred CccccCCcccccccccccccCCChhhHHHHHHHHhhhCC-CCCCCCcccccccccceecCC----CCCCCCeEEecCCCC
Q 023079 181 DVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTH 255 (287)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~~~G~r~~~~~~----~~~~~~~~i~~~~~~ 255 (287)
+++.... ++.+..++++.++++++.++++|| .+...++++.|+|+||++.+. .+..++|.|..+..+
T Consensus 277 td~~~~~--------~~~~~~~~~~~i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~ 348 (508)
T PRK12266 277 TDVEYKG--------DPAKVAISEEEIDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDEN 348 (508)
T ss_pred CCCCCCC--------CCCCCCCCHHHHHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccC
Confidence 8764321 234566788999999999999995 899999999999999998763 233578877554212
Q ss_pred CCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 256 GVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 256 ~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
+.+|++.++|. +||+++.+|+.++|.+.
T Consensus 349 g~~gli~v~Gg---k~Tt~r~mAe~~~~~~~ 376 (508)
T PRK12266 349 GGAPLLSVFGG---KITTYRKLAEHALEKLA 376 (508)
T ss_pred CCCCeEEEEcC---hHHHHHHHHHHHHHHHH
Confidence 56899999984 89999999999999875
No 23
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.93 E-value=1.5e-24 Score=189.68 Aligned_cols=260 Identities=18% Similarity=0.168 Sum_probs=183.6
Q ss_pred hcCCCeeeeeCHHHHHhhCCCcc---c-ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEE
Q 023079 6 ANGVHGLRMLEGFEAMKMEPELQ---C-VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVY 80 (287)
Q Consensus 6 ~~g~~~~~~L~~~ei~~~~P~l~---~-~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~ 80 (287)
+.|.. .++|+++++.+++|+++ + .+-+=..++||+||..|+.++.+.+...||.|.. -+|++++.+..+ +.+.
T Consensus 202 e~GAk-~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~LLs~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~ 279 (509)
T KOG2853|consen 202 ELGAK-VELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWALLSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAF 279 (509)
T ss_pred hhcch-hcccCHHHHhhhCCcccccceeeeecccccccccCHHHHHHHHHHHhhhhcceEec-ceEEEEEEecccceeee
Confidence 45776 99999999999999997 2 2333367899999999999999999999999986 488888776432 2333
Q ss_pred ecCCcccc-----cCCCCCCC-CCceeEecCEEEEcCCCCchHHHHHhC-CCCC---c-ccCCccccceEEEEEcCCCCC
Q 023079 81 ISESKNLR-----NWDGVSPL-QPELTLIPKLVVNSAGLSAPALAKRFI-GLDN---V-FIPPAYYARGCYFSLANTKVA 149 (287)
Q Consensus 81 t~~g~~~~-----~~~~~~~~-~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~---~-~~p~~~~~~g~~~~~~~~~~~ 149 (287)
|++|.+.- +=-.+.+. .....+++..+|||||+||.+++++.+ |... . ..| +.++|.+++++..+...
T Consensus 280 tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAgIG~g~g~L~vplP-iepRKRyvyvi~~~~~P 358 (509)
T KOG2853|consen 280 TDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAGIGKGPGLLAVPLP-IEPRKRYVYVIFAPDVP 358 (509)
T ss_pred cccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhccCCCCceeeeccc-CCccceeEEEEeCCCCC
Confidence 33330000 00000000 122468999999999999999999884 2110 0 112 44488887777544222
Q ss_pred CCCceeeeCCCCCCceeEEeeecC-CcEEECCCcc-ccCCcccccccccccccCCCh-hhHHHHHHHHhhhCCCCCCCCc
Q 023079 150 PFKHLIYPIPEDGGLGVHVTLDLD-GQIKFGPDVE-WIDGIDDTLSFLNRFDYSVNA-NRAERFYPEIRKYYPDLRDGSL 226 (287)
Q Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~~-g~l~iG~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~l~~~~i 226 (287)
.+...+- .+ ..|+|++++.- |++++|.+.. +.+ +|..+..++. ...+.++..+..++|.++.+++
T Consensus 359 Gl~~Pl~--iD--psG~f~Rrdglg~nfl~grsp~ed~~--------~d~~nldVD~d~F~qkiwP~L~nRVP~fetakV 426 (509)
T KOG2853|consen 359 GLDTPLT--ID--PSGVFFRRDGLGGNFLCGRSPSEDEE--------PDHSNLDVDHDYFYQKIWPHLANRVPAFETAKV 426 (509)
T ss_pred CCCCcee--EC--CCccEEEecCCCCceecccCCccccC--------CCccccccChHHHHhhhhHHHHhcccccceeee
Confidence 2322111 12 24799988754 4678875432 211 1223334443 4466899999999999999999
Q ss_pred ccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 227 QPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 227 ~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
.+.|+|.+.. ++.|.+.+||++| -+.|++.++|++|||++.+|++|+.++|+|+
T Consensus 427 qsaWaGyyD~----NtfD~ngViG~HP--~y~Nly~atGFsghGvqqs~avgRAiaElIl 480 (509)
T KOG2853|consen 427 QSAWAGYYDH----NTFDDNGVIGEHP--LYTNLYMATGFSGHGVQQSPAVGRAIAELIL 480 (509)
T ss_pred eehhcccccc----cccccCCcccCCc--ceeeeeeeecccccchhcchHHHHHHHHHHh
Confidence 9999999998 6778888999998 6889999999999999999999999999986
No 24
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.93 E-value=3.3e-24 Score=203.54 Aligned_cols=264 Identities=20% Similarity=0.219 Sum_probs=185.6
Q ss_pred ccchhcCCC-eeee-eCHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE
Q 023079 2 KRGTANGVH-GLRM-LEGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL 72 (287)
Q Consensus 2 ~~~~~~g~~-~~~~-L~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~ 72 (287)
+..+++|+. ++++ ++++|+++++|.+. ..+|+|+|++|++||..++.+|++.++++|++|+++++|+++++
T Consensus 127 ~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~ 206 (483)
T TIGR01320 127 EALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR 206 (483)
T ss_pred HHHhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE
Confidence 456777872 2675 79999999999985 56899999999999999999999999999999999999999988
Q ss_pred eC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcCC-C
Q 023079 73 EG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLANT-K 147 (287)
Q Consensus 73 ~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~~-~ 147 (287)
.+ +.|.|++.+..++ ...+++|++||||||+|+..|++++|.. .+.+.| ++|+++.++.+ .
T Consensus 207 ~~~~~v~v~~~~~~~g----------~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P----~~Gq~l~l~~~~~ 272 (483)
T TIGR01320 207 QSDGSWTVTVKNTRTG----------GKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFP----VSGLFLRCGNPEL 272 (483)
T ss_pred cCCCeEEEEEeeccCC----------ceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceee----eeEEEEEeCCHHH
Confidence 65 4677754321000 1126999999999999999999998522 345566 99999999754 2
Q ss_pred CCCCCceeeeCCCCC--Ccee-EE-eeecCCcEE--ECCCcccc-----CCc-cccc---cccc----------c---cc
Q 023079 148 VAPFKHLIYPIPEDG--GLGV-HV-TLDLDGQIK--FGPDVEWI-----DGI-DDTL---SFLN----------R---FD 199 (287)
Q Consensus 148 ~~~~~~~i~~~~~~~--~~~~-~~-~~~~~g~l~--iG~~~~~~-----~~~-~~~~---~~~~----------~---~~ 199 (287)
....+..+|++|++. ..++ |+ ++..+|+.. |||++.+. +.. .|.. .+.+ . ..
T Consensus 273 ~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (483)
T TIGR01320 273 TEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTK 352 (483)
T ss_pred HhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHH
Confidence 223456799999874 2344 55 555577765 99998731 110 0110 0000 0 00
Q ss_pred cCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC-C-----CC-CCeEEecCCCCCCCCeEEEeCCCCch
Q 023079 200 YSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-Q-----SP-IDFVIQGDDTHGVPGLVNLFGIESPG 270 (287)
Q Consensus 200 ~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~-~-----~~-~~~~i~~~~~~~~~~l~~~~G~~g~G 270 (287)
+...+ ......++.+++|+|.+...++....+|+|++..+.. . .+ ++|+|... ++.+++.-.-|+|
T Consensus 353 ~~~~e~~~~~~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~-----~~~~~~l~~~SPg 427 (483)
T TIGR01320 353 YLIGQLRKSEEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADA-----DGSIAGLLGASPG 427 (483)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECC-----CCeEEEecCCCch
Confidence 00000 1122346778899999999999999999999988741 1 11 24466443 4666654456799
Q ss_pred hhhhHHHHHHHHHH
Q 023079 271 LTSSMAIAEYVAAK 284 (287)
Q Consensus 271 ~t~ap~~g~~va~~ 284 (287)
+|+|.++|+.|++.
T Consensus 428 aTss~~i~~~v~~~ 441 (483)
T TIGR01320 428 ASTAVSIMLDLLER 441 (483)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999999985
No 25
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.93 E-value=2e-24 Score=204.84 Aligned_cols=254 Identities=22% Similarity=0.296 Sum_probs=189.9
Q ss_pred cchhcCCCeeeeeCHHHHHhhCCCcc----------cceeEEcCCc-eeecHHHHHHHHHHHHHH----CC--cEEEcCc
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEPELQ----------CVKALLSPAS-GIVDSHSLMLSLVGEAEN----HG--TTFSNNT 65 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P~l~----------~~~al~~p~~-g~vdp~~l~~~l~~~a~~----~G--v~~~~~~ 65 (287)
..+..+.+ +++++++|+++++|.+. ..+|+|.|++ +.+||..++.+|++.|++ +| +++++++
T Consensus 160 ~~~~~~~~-~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t 238 (497)
T PTZ00383 160 VFKELFPS-MQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNT 238 (497)
T ss_pred HHHccCCC-eEEECHHHHHHhCcccccCccccccccceEEEEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCC
Confidence 44556665 99999999999999873 5689999988 699999999999999999 88 7899999
Q ss_pred eeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC-CCCCcccCCccccceEEEEE
Q 023079 66 SVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GLDNVFIPPAYYARGCYFSL 143 (287)
Q Consensus 66 ~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~-~~~~~~~p~~~~~~g~~~~~ 143 (287)
+|++|+++ ++.|.|+|.+| +++|++||||||+|+..|+++++ +.++.+.| ++|+|+..
T Consensus 239 ~V~~I~~~~~~~~~V~T~~G----------------~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~P----v~G~~~~~ 298 (497)
T PTZ00383 239 EVLNIERSNDSLYKIHTNRG----------------EIRARFVVVSACGYSLLFAQKMGYGLEYSCLP----VAGSFYFS 298 (497)
T ss_pred EEEEEEecCCCeEEEEECCC----------------EEEeCEEEECcChhHHHHHHHhCCCCCCCEEe----cCceEEEc
Confidence 99999988 45688999988 89999999999999999999985 34667777 99999877
Q ss_pred cCCCCCCCCceeeeCCCCC--CceeEEeeec--CCcEEECCCccccCCc-----cccccc-----ccc------cccCCC
Q 023079 144 ANTKVAPFKHLIYPIPEDG--GLGVHVTLDL--DGQIKFGPDVEWIDGI-----DDTLSF-----LNR------FDYSVN 203 (287)
Q Consensus 144 ~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~--~g~l~iG~~~~~~~~~-----~~~~~~-----~~~------~~~~~~ 203 (287)
++ .++..+|+++++. +.++|+.++. +|+++|||++.+.... .++.++ ++- ++.-.+
T Consensus 299 ~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 374 (497)
T PTZ00383 299 GN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKD 374 (497)
T ss_pred Ch----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCChhHHHhHHHHhhC
Confidence 53 4678899988763 5678998885 8889999998642110 011000 000 000000
Q ss_pred ----------------hhhHHHHHHHHhhhCCCCCCCCccc--ccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeC
Q 023079 204 ----------------ANRAERFYPEIRKYYPDLRDGSLQP--SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFG 265 (287)
Q Consensus 204 ----------------~~~~~~~~~~~~~~~P~l~~~~i~~--~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G 265 (287)
......+++.+++++|.+...++.. .++|+|++..+. .+..+.+|.......+|++...|
T Consensus 375 ~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~--~~~~L~~g~~~i~~~~~~i~~~~ 452 (497)
T PTZ00383 375 STMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDK--VSKKLLLGEGKIDPGKGIIFNIT 452 (497)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEEC--CCCeEecCceEEecCCCcEEecc
Confidence 1123345677889999999999886 466999999874 22336667664434578777777
Q ss_pred CCCchhhhhHHHHHHHHHH
Q 023079 266 IESPGLTSSMAIAEYVAAK 284 (287)
Q Consensus 266 ~~g~G~t~ap~~g~~va~~ 284 (287)
- ++|.|+|.+.|+.=+..
T Consensus 453 ~-spgast~l~~~~~d~~~ 470 (497)
T PTZ00383 453 P-SPGATTCLGNAESDMRE 470 (497)
T ss_pred C-CCcHHHHHHHHHHHHHH
Confidence 4 59999999888654433
No 26
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=199.07 Aligned_cols=264 Identities=19% Similarity=0.176 Sum_probs=188.4
Q ss_pred cchhcCC-Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEE
Q 023079 3 RGTANGV-HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHL 72 (287)
Q Consensus 3 ~~~~~g~-~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~ 72 (287)
..+.+++ ++++++ |++|+++++|.+. ..+|+|+|+++.+|+..++++|.+.+.+ .|++++++++|+++++
T Consensus 134 ~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~ 213 (497)
T PRK13339 134 ALKQHPMFDNIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER 213 (497)
T ss_pred HhhccCCCCCcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE
Confidence 4566677 238999 8999999999984 4789999999999999999999999965 4999999999999988
Q ss_pred e-CCeEEEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcC
Q 023079 73 E-GNCMNVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLAN 145 (287)
Q Consensus 73 ~-~~~~~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~ 145 (287)
. ++.|.|+ |..+. ..+++||+||||||+|+..|++++|.. .+.+.| ++|+++.+++
T Consensus 214 ~~d~~w~v~v~~t~~g~-------------~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~P----vkGq~l~l~~ 276 (497)
T PRK13339 214 LSDGGWEVTVKDRNTGE-------------KREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFP----ISGQFLRCTN 276 (497)
T ss_pred CCCCCEEEEEEecCCCc-------------eEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEe----eeEEEEEecC
Confidence 7 6778775 33331 125899999999999999999999532 256677 9999999976
Q ss_pred CCCCCCC---ceeeeCCCCC--Ccee-EE-eeecCCc--EEECCCccccC-----Cc-cccc---ccc----------cc
Q 023079 146 TKVAPFK---HLIYPIPEDG--GLGV-HV-TLDLDGQ--IKFGPDVEWID-----GI-DDTL---SFL----------NR 197 (287)
Q Consensus 146 ~~~~~~~---~~i~~~~~~~--~~~~-~~-~~~~~g~--l~iG~~~~~~~-----~~-~~~~---~~~----------~~ 197 (287)
+ ..++ ..+|+.+++. ..++ |+ ++..+|+ ++|||++.+.. .. .|.. .+. +.
T Consensus 277 ~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~ 354 (497)
T PRK13339 277 P--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKN 354 (497)
T ss_pred H--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhc
Confidence 3 2332 3689988653 2233 55 5566786 89999987530 00 1111 000 00
Q ss_pred c---ccCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEE-ecCCCCCCCCeEEEeCCCCch
Q 023079 198 F---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVI-QGDDTHGVPGLVNLFGIESPG 270 (287)
Q Consensus 198 ~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i-~~~~~~~~~~l~~~~G~~g~G 270 (287)
+ .+.+.+ .....+++.+++|+|.+...++....+|+|++..+. ++...||++ |..-....++.+++.-.-|+|
T Consensus 355 ~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna~SPg 434 (497)
T PRK13339 355 MPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLGESPG 434 (497)
T ss_pred cHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecCCCcH
Confidence 0 011111 123456788999999999999999999999998875 344447754 332111235755544456799
Q ss_pred hhhhHHHHHHHHHHH
Q 023079 271 LTSSMAIAEYVAAKF 285 (287)
Q Consensus 271 ~t~ap~~g~~va~~i 285 (287)
+|+|.++|+.|++.+
T Consensus 435 ATssl~ia~~v~~~~ 449 (497)
T PRK13339 435 ASTSVSVALEVLERN 449 (497)
T ss_pred HHhhHHHHHHHHHHH
Confidence 999999999999864
No 27
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.91 E-value=5.5e-23 Score=179.75 Aligned_cols=251 Identities=17% Similarity=0.172 Sum_probs=164.2
Q ss_pred cchhcCCCeeeeeCHHHHHhhCC-Ccc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE---eCC
Q 023079 3 RGTANGVHGLRMLEGFEAMKMEP-ELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL---EGN 75 (287)
Q Consensus 3 ~~~~~g~~~~~~L~~~ei~~~~P-~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~---~~~ 75 (287)
..+..++. ++.++.+|+++++| .+. ...|+..+.+|++++.+.+.+|...++.+|+.|+.+.+|..++. ++.
T Consensus 109 ~~k~~~l~-h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~ 187 (399)
T KOG2820|consen 109 NLKRKGLA-HSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGN 187 (399)
T ss_pred HHhhhhhh-hhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCc
Confidence 35667886 99999999999999 443 67899999999999999999999999999999999999998874 345
Q ss_pred eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCcee
Q 023079 76 CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI 155 (287)
Q Consensus 76 ~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i 155 (287)
.+.|.|.+|. ++.|+++|+++|+|..++++...+...|+.| +. ..-+++..... +.+
T Consensus 188 ~v~V~Tt~gs---------------~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~-i~-ltvcywk~~~~------~~~ 244 (399)
T KOG2820|consen 188 HVSVQTTDGS---------------IYHAKKIIFTVGAWINKLLPTSLAIGFPVAP-IQ-LTVCYWKTKKN------MPV 244 (399)
T ss_pred eeEEEeccCC---------------eeecceEEEEecHHHHhhcCcccccCCccce-eE-eehhhheeecC------Cce
Confidence 6779998882 6999999999999999999864345555444 11 01122222111 111
Q ss_pred eeCCCCCCceeEEeeecCCc-EEECCCc-cccC------Cc-cccc-ccccccccCCChhhHHHHHHHHhhhCCCCCCCC
Q 023079 156 YPIPEDGGLGVHVTLDLDGQ-IKFGPDV-EWID------GI-DDTL-SFLNRFDYSVNANRAERFYPEIRKYYPDLRDGS 225 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~g~-l~iG~~~-~~~~------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~ 225 (287)
|- ..+ ..-..|-|..+++ ++.|... ++.. +. .+.. .-++...-......++-+...++.+.|++.+..
T Consensus 245 ~l-~~d-~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~ 322 (399)
T KOG2820|consen 245 YL-FDD-DCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRS 322 (399)
T ss_pred ee-cCC-CCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCCCCcccCcchHHHHHHHHHHHhCccccCCC
Confidence 10 000 0101111122221 2222111 1000 00 0000 000111111122355666677788889998655
Q ss_pred cccccccccceecCC-CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHhC
Q 023079 226 LQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 287 (287)
Q Consensus 226 i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~~ 287 (287)
.... ..|.+ ++||.+|+||..| ..+|+|++.|+|||||+++|++|+.+|+++.+
T Consensus 323 p~~t------~~C~YT~TpD~~FviD~~P--~~~Nv~Vg~G~SGHGFK~aP~iGk~lae~~~~ 377 (399)
T KOG2820|consen 323 PINT------KMCMYTDTPDANFVIDKHP--QYDNVFVGGGGSGHGFKFAPNIGKYLAEMAMG 377 (399)
T ss_pred ccee------eEEEeeCCCCcCeeeecCC--CcccEEEecCCCCcceeecchHHHHHHHHhhh
Confidence 4332 33333 6889999999998 78899999999999999999999999998753
No 28
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.91 E-value=8.6e-23 Score=194.13 Aligned_cols=264 Identities=20% Similarity=0.231 Sum_probs=182.9
Q ss_pred cchhcCC-Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEE
Q 023079 3 RGTANGV-HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHL 72 (287)
Q Consensus 3 ~~~~~g~-~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~ 72 (287)
..+++|+ .+++++ +++|+++++|.+. ..+|+|+|.++++||..++.+|.+.++++| ++++++++|++++.
T Consensus 133 ~~~~~g~~~~~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~ 212 (494)
T PRK05257 133 ALKANPLFAGMEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR 212 (494)
T ss_pred HHHhCCCCCCCEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE
Confidence 4566776 237774 9999999999983 679999999999999999999999999987 89999999999998
Q ss_pred eCC-eEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCC---CCcccCCccccceEEEEEcC
Q 023079 73 EGN-CMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL---DNVFIPPAYYARGCYFSLAN 145 (287)
Q Consensus 73 ~~~-~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~---~~~~~p~~~~~~g~~~~~~~ 145 (287)
.++ .|.|.+.+ |. ..+++|++||+|||+|+..|+++++.. ++++.| ++|+++++++
T Consensus 213 ~~dg~~~v~~~~~~~G~-------------~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~P----vrGq~l~~~~ 275 (494)
T PRK05257 213 NDDGSWTVTVKDLKTGE-------------KRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFP----VSGQFLVCEN 275 (494)
T ss_pred CCCCCEEEEEEEcCCCc-------------eEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeee----eeEEEEEcCC
Confidence 655 48776543 31 125999999999999999999998422 245666 9999999976
Q ss_pred CCCCCCCce--eeeCCCCC--Ccee-EE-eeecCCc--EEECCCccccCCc------ccccc---c------c----ccc
Q 023079 146 TKVAPFKHL--IYPIPEDG--GLGV-HV-TLDLDGQ--IKFGPDVEWIDGI------DDTLS---F------L----NRF 198 (287)
Q Consensus 146 ~~~~~~~~~--i~~~~~~~--~~~~-~~-~~~~~g~--l~iG~~~~~~~~~------~~~~~---~------~----~~~ 198 (287)
+. ...++. +|+.+++. ..++ |+ ++..+|+ ++|||++.+.... .|... + . +.+
T Consensus 276 ~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 354 (494)
T PRK05257 276 PE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNF 354 (494)
T ss_pred HH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhh
Confidence 41 112344 89887632 2233 44 5556775 8999988642100 11110 0 0 000
Q ss_pred ---ccCCCh--hhHHHHHHHHhhhCCCCCCCCcccccccccceecCCC-CCCCCeEEec-CCCCCCCCeEEEeCCCCchh
Q 023079 199 ---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-QSPIDFVIQG-DDTHGVPGLVNLFGIESPGL 271 (287)
Q Consensus 199 ---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~-~~~~~~~i~~-~~~~~~~~l~~~~G~~g~G~ 271 (287)
.+-+.+ .....+++.+++|+|.++..++....+|+|++..++. ...+.+..|. .- ...++.+++.-.-|+|+
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i-~~~~~~~~~l~~~SPga 433 (494)
T PRK05257 355 DLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVV-SSADGSIAALLGASPGA 433 (494)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEE-ecCCCeEEEEcCCCchH
Confidence 011111 1234567889999999999999999999999988641 0012233332 10 02357665544567999
Q ss_pred hhhHHHHHHHHHHH
Q 023079 272 TSSMAIAEYVAAKF 285 (287)
Q Consensus 272 t~ap~~g~~va~~i 285 (287)
|+|.++|+.|++.+
T Consensus 434 t~s~~i~~~v~~~~ 447 (494)
T PRK05257 434 STAVPIMLEVLEKC 447 (494)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999864
No 29
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.88 E-value=1.5e-21 Score=179.54 Aligned_cols=246 Identities=18% Similarity=0.217 Sum_probs=184.4
Q ss_pred CCCeeeeeCHHHHHhhCCCcc---cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEec
Q 023079 8 GVHGLRMLEGFEAMKMEPELQ---CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYIS 82 (287)
Q Consensus 8 g~~~~~~L~~~ei~~~~P~l~---~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t~ 82 (287)
.+...++||++|..+++|-|+ ..|++. .-||+.|..++..+++--|.++|+++.+|.+|.++..++++ + .++..
T Consensus 186 ~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~V-YyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~r 264 (680)
T KOG0042|consen 186 NLKSSYFLSKKEALEIFPMLRKDNLKGAMV-YYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARAR 264 (680)
T ss_pred ccccceeecHHHHHHhCccccccCceeEEE-EecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEE
Confidence 344478999999999999996 445554 45789999999999999999999999999999999776543 3 34444
Q ss_pred CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhCC-CCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCC
Q 023079 83 ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPED 161 (287)
Q Consensus 83 ~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~-~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (287)
+.. +|+++.|+|+.||||||++++.|.+|-.. .+....| +-|.|+++..-....--.++-|.- .
T Consensus 265 D~i----------TG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~p----SsGvHIVlP~yY~P~~mGlldP~T-s 329 (680)
T KOG0042|consen 265 DHI----------TGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVP----SSGVHIVLPGYYCPENMGLLDPKT-S 329 (680)
T ss_pred Eee----------cCcEEEEEEEEEEeCCCCccHHHHhhcccccCceecc----CCceeEEcccccCCcccccccCCC-C
Confidence 442 35578999999999999999999988731 2233455 889999996543221112222211 1
Q ss_pred CCceeEEeeecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhC---CCCCCCCcccccccccceec
Q 023079 162 GGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYY---PDLRDGSLQPSYAGIRPKLS 238 (287)
Q Consensus 162 ~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~l~~~~i~~~~~G~r~~~~ 238 (287)
.++ +.|+.+|.|..+.|+|+...+. ..++.+++++++.++++++.|+ +++...++.+.|+|+||++.
T Consensus 330 DgR-ViFflPWqg~TIaGTTD~pt~v---------~~~P~PtE~dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~ 399 (680)
T KOG0042|consen 330 DGR-VIFFLPWQGKTIAGTTDIPTSV---------THSPTPTEDDIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVR 399 (680)
T ss_pred CCc-EEEEeccCCceeeccCCCCCCC---------CCCCCCCHHHHHHHHHHHHHhhCCCcccchhhhHHHhhCCccccc
Confidence 244 6677779999999998875331 2355678899999999999998 34778899999999999999
Q ss_pred CCCC------CCCCeEEecCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 239 GPRQ------SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 239 ~~~~------~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
||.. ..++.++...+ +||+.++|. .||+...+|+...+.+.
T Consensus 400 DP~~~~~t~sl~R~H~v~~~~----~gLiTIaGG---KWTTyR~MAEeTVd~aI 446 (680)
T KOG0042|consen 400 DPKKVKDTQSLVRNHFVFVSP----SGLITIAGG---KWTTYRHMAEETVDAAI 446 (680)
T ss_pred CCCccccchhhhhhceEEecC----CCeEEEecC---cchhHHHHHHHHHHHHH
Confidence 8711 22445666665 699999884 89999999999888653
No 30
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.8e-16 Score=136.95 Aligned_cols=214 Identities=18% Similarity=0.211 Sum_probs=154.6
Q ss_pred eeeeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccC
Q 023079 11 GLRMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNW 90 (287)
Q Consensus 11 ~~~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~ 90 (287)
+++.|+.+|+. ++|.-. .-|++. .....++.+++..|.+.+.++|++|.. .+|.+++.. .
T Consensus 121 ~fr~l~e~EL~-~f~~~~-~~G~~~-Tt~~sE~~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~--------~-------- 180 (342)
T KOG3923|consen 121 GFRDLTERELL-GFPDYS-TYGIHF-TTYLSEGPKYLPYLKKRLTENGVEFVQ-RRVESLEEV--------A-------- 180 (342)
T ss_pred hhhcCCHHHhc-CCCCcc-ccceeE-EEeeccchhhhHHHHHHHHhcCcEEEE-eeeccHHHh--------c--------
Confidence 46777777776 555432 123332 355678899999999999999999985 577776532 1
Q ss_pred CCCCCCCCceeEecCEEEEcCCCCchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCceeEEee
Q 023079 91 DGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTL 170 (287)
Q Consensus 91 ~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 170 (287)
.=.+|+||||+|.|+..|+ |+.+ +.| .||+.+.++.+ ++++.+|. + +..-|++|
T Consensus 181 ----------~~~~DVivNCtGL~a~~L~---gDd~--~yP----iRGqVl~V~Ap---Wvkhf~~~--D--~~~ty~iP 234 (342)
T KOG3923|consen 181 ----------RPEYDVIVNCTGLGAGKLA---GDDD--LYP----IRGQVLKVDAP---WVKHFIYR--D--FSRTYIIP 234 (342)
T ss_pred ----------cCCCcEEEECCcccccccc---CCcc--eee----ccceEEEeeCC---ceeEEEEe--c--CCccEEec
Confidence 1238999999999999997 3222 455 99999999874 66777775 2 12135666
Q ss_pred ecCCcEEECCCccccCCcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEe
Q 023079 171 DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQ 250 (287)
Q Consensus 171 ~~~g~l~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~ 250 (287)
- .+.+.+|++.+. +.++...++++...++++..++.|.|..+.++..|+|+||.-..- .-..+ ++.
T Consensus 235 ~-~~~V~lGg~~Q~-----------g~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~v-RlE~e-~~~ 300 (342)
T KOG3923|consen 235 G-TESVTLGGTKQE-----------GNWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQV-RLEAE-LRT 300 (342)
T ss_pred C-CceEEEcccccc-----------CcccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCce-eeeee-eec
Confidence 4 677899987764 457778889999999999999999999999999999999984320 00000 111
Q ss_pred cCCCCCCCCeEEEeCCCCchhhhhHHHHHHHHHHHh
Q 023079 251 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 251 ~~~~~~~~~l~~~~G~~g~G~t~ap~~g~~va~~i~ 286 (287)
... ...-+++..||+|+|+|++.++|-.++.+++
T Consensus 301 ~~~--k~~~VVHnYGHgG~G~Tl~wGtAlea~~Lv~ 334 (342)
T KOG3923|consen 301 RGG--KRLTVVHNYGHGGNGFTLGWGTALEAAKLVL 334 (342)
T ss_pred CCC--ccceeEeeccCCCCceecccchHHHHHHHHH
Confidence 111 2234589999999999999999988887764
No 31
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.56 E-value=1.4e-13 Score=118.67 Aligned_cols=214 Identities=16% Similarity=-0.004 Sum_probs=144.1
Q ss_pred CCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 36 PASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 36 p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
.+.++++|..+++.++..|++.| |++..+ .|.++..+.+++. |-.... .++....+++++|+++|+
T Consensus 139 ~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~-----------~~ti~~~d~~~ivvsaGP 206 (380)
T KOG2852|consen 139 NTTAQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEA-----------EDTIIKADVHKIVVSAGP 206 (380)
T ss_pred CccceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhh-----------cCceEEeeeeEEEEecCC
Confidence 46789999999999999998775 888875 6777765555543 322211 122347899999999999
Q ss_pred CchHHHHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceeeeCCCCCCc------eeEEeeecCC-cEEECCCccccC
Q 023079 114 SAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL------GVHVTLDLDG-QIKFGPDVEWID 186 (287)
Q Consensus 114 ~s~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~g-~l~iG~~~~~~~ 186 (287)
|++.|+..++ ++-.+-..+.+++.....-++.++-+-...+. -.|.++ ++ .+++|.++...-
T Consensus 207 WTskllp~~r---------IsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rk--d~Evyicg~~~~e~~ 275 (380)
T KOG2852|consen 207 WTSKLLPFTR---------ISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARK--DREVYICGETDKEHL 275 (380)
T ss_pred Cchhhccccc---------cceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecC--CceEEEecCCCcccc
Confidence 9999976542 11144456666654221112222221111111 134443 43 466775554321
Q ss_pred CcccccccccccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCCCCCCCCeEEecCCCCCCCCeEEEeCC
Q 023079 187 GIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGI 266 (287)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~G~ 266 (287)
-+ .+..+..++++.+..+.+.+..+.+.+.+..+....+=+.|.... ++-++||+.+ .++|+++||
T Consensus 276 lP------edsd~v~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~sn~----tg~PvIget~----sg~yVaagH 341 (380)
T KOG2852|consen 276 LP------EDSDDVFVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTSNI----TGIPVIGETK----SGVYVAAGH 341 (380)
T ss_pred CC------cccccceeCHHHHHHHHHHHHHhhhhhccchhhhhhhccccccCC----CCCceEeecC----CceEEeecc
Confidence 11 023456678899999999999999999998888776766666433 3567999986 399999999
Q ss_pred CCchhhhhHHHHHHHHHHHh
Q 023079 267 ESPGLTSSMAIAEYVAAKFL 286 (287)
Q Consensus 267 ~g~G~t~ap~~g~~va~~i~ 286 (287)
+==|++.+|++|+.+||+|+
T Consensus 342 scWGItnaPaTG~~mAElll 361 (380)
T KOG2852|consen 342 SCWGITNAPATGKCMAELLL 361 (380)
T ss_pred cccceecCcchhHHHHHHHh
Confidence 99999999999999999986
No 32
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.56 E-value=2.6e-13 Score=124.80 Aligned_cols=259 Identities=21% Similarity=0.254 Sum_probs=171.3
Q ss_pred Ceeeee-CHHHHHhhCCCcc-------cceeEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCe-EEE
Q 023079 10 HGLRML-EGFEAMKMEPELQ-------CVKALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNC-MNV 79 (287)
Q Consensus 10 ~~~~~L-~~~ei~~~~P~l~-------~~~al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~-~~V 79 (287)
+++++. |.++++++.|.+- ..++.+.+.+..||-..|++.|.+.++++ |++++.+++|++|++.+++ |.|
T Consensus 139 ~~Me~sed~~~i~~w~PLvm~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v 218 (488)
T PF06039_consen 139 PGMEFSEDPEQIAEWAPLVMEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEV 218 (488)
T ss_pred CCcEEccCHHHHHhhCCeecCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEE
Confidence 457777 7999999999872 56788999999999999999999999888 9999999999999998665 998
Q ss_pred EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC---CCCCcccCCccccceEEEEEcCCCC-CCCCcee
Q 023079 80 YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI---GLDNVFIPPAYYARGCYFSLANTKV-APFKHLI 155 (287)
Q Consensus 80 ~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~---~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i 155 (287)
++.+-.+ +...+++|+.|+++||.+|-.|++..| +..+--.| +-|++++.+++.. ..-+.-+
T Consensus 219 ~~~~~~~----------~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfP----VsG~fl~~~n~~vv~~H~aKV 284 (488)
T PF06039_consen 219 KVKDLKT----------GEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFP----VSGQFLRCKNPEVVAQHNAKV 284 (488)
T ss_pred EEEecCC----------CCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCc----ccceEEecCCHHHHHHhccee
Confidence 7754321 124589999999999999999999884 12344456 8899988875411 0112334
Q ss_pred eeCCCCC---CceeEEee-ecCC--cEEECCCccccCC-----c-cccc---------cc----ccccc---cCCC--hh
Q 023079 156 YPIPEDG---GLGVHVTL-DLDG--QIKFGPDVEWIDG-----I-DDTL---------SF----LNRFD---YSVN--AN 205 (287)
Q Consensus 156 ~~~~~~~---~~~~~~~~-~~~g--~l~iG~~~~~~~~-----~-~~~~---------~~----~~~~~---~~~~--~~ 205 (287)
|...... ..-.|+-+ -.+| .++|||++.+..- + -|.. .+ .++.+ |-+. ..
T Consensus 285 Ygka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~ 364 (488)
T PF06039_consen 285 YGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQ 364 (488)
T ss_pred eeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhcc
Confidence 5432210 11134422 2345 4889998865210 0 0100 00 01111 0000 12
Q ss_pred hHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeE-EEeCCCCchhhhhHHHHHHHHH
Q 023079 206 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLV-NLFGIESPGLTSSMAIAEYVAA 283 (287)
Q Consensus 206 ~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~-~~~G~~g~G~t~ap~~g~~va~ 283 (287)
..+..++.+++++|.+...++....+|+|+++..+ ....+...+|..-....+|.+ .+.|. |+|.++|..+.-.|.+
T Consensus 365 s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsiaaLLGA-SPGASTav~iMl~vl~ 443 (488)
T PF06039_consen 365 SKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIAALLGA-SPGASTAVSIMLDVLE 443 (488)
T ss_pred CHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceEeeccC-CCChhhhHHHHHHHHH
Confidence 23455788999999999999999999999998875 111122344543222345744 45674 5999999887766655
No 33
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.64 E-value=6.2e-06 Score=72.94 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=116.5
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++...+...|.+.+++.|++++.+++|+++..+++++.+....+. .+++||.||+|+|.++. +
T Consensus 86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~a~~vv~a~G~~s~-~ 150 (295)
T TIGR02032 86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGE--------------GTVTAKIVIGADGSRSI-V 150 (295)
T ss_pred EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCcc--------------EEEEeCEEEECCCcchH-H
Confidence 35788899999999999999999999999999888777766543331 27999999999999974 6
Q ss_pred HHHhCCCCCcccCCccccceEEEEEcCCCCC-CCCc--eeeeCCCCCCceeEEeeecCCcEEECCCccccCCcccccccc
Q 023079 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVA-PFKH--LIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFL 195 (287)
Q Consensus 119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~-~~~~--~i~~~~~~~~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~~ 195 (287)
.+.++ ... .+ .....+....+...... .-+. ..+........-.++.|..++++.+|.....
T Consensus 151 ~~~~~-~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~----------- 215 (295)
T TIGR02032 151 AKKLG-LRK--EP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRS----------- 215 (295)
T ss_pred HHhcC-CCC--CC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeecc-----------
Confidence 66663 321 11 01112222222211000 0011 1111110011225567766676777643211
Q ss_pred cccccCCChhhHHHHHHHHhhhCCCCCCCCcccccccccceecCC--CCCCCCeEEecCCCCCCCCeEEEeCCCCchhhh
Q 023079 196 NRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTS 273 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~G~~g~G~t~ 273 (287)
. + .....++.++...+.+|.+....+...+.+..|+.... ...++-+++|..- +.+.. +.|.|+.+
T Consensus 216 -~-~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA-----~~~~P--~~g~G~~~ 283 (295)
T TIGR02032 216 -A-E---EGEDLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAA-----GHVKP--LTGEGIYY 283 (295)
T ss_pred -C-C---CCCCHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEeccc-----CCCCC--ccCCcHHH
Confidence 0 1 22344556666666778887777777677666653210 0111123455542 11111 34568999
Q ss_pred hHHHHHHHHHHH
Q 023079 274 SMAIAEYVAAKF 285 (287)
Q Consensus 274 ap~~g~~va~~i 285 (287)
|-.-|.++|+.|
T Consensus 284 a~~~a~~aa~~~ 295 (295)
T TIGR02032 284 AMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHHhhC
Confidence 988888888753
No 34
>PLN02697 lycopene epsilon cyclase
Probab=98.35 E-value=4.6e-05 Score=73.47 Aligned_cols=203 Identities=11% Similarity=0.077 Sum_probs=112.1
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.++...+...|++.+.+.|++++ +++|+++..+++++. +.+.+|. +++|+.||.|+|+|+..+
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~---------------~i~A~lVI~AdG~~S~rl 251 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGR---------------VIPCRLATVASGAASGRL 251 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCc---------------EEECCEEEECCCcChhhh
Confidence 58999999999999999999984 679999988777765 4455552 799999999999999655
Q ss_pred HHHhCCCCCcccCCccccceEEEEEcCCCCCCCCceee---e---CC-----CCCC-ceeEEeeecCCcEEE-CCCcccc
Q 023079 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIY---P---IP-----EDGG-LGVHVTLDLDGQIKF-GPDVEWI 185 (287)
Q Consensus 119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~---~---~~-----~~~~-~~~~~~~~~~g~l~i-G~~~~~~ 185 (287)
...... . + .+......|..+.+....... +..++ . .+ .... .-+|+.|..++++.+ ++.- .
T Consensus 252 ~~~~~~-~-~-~~~~Q~a~Gi~ve~~~~~~d~-~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~l--~ 325 (529)
T PLN02697 252 LQYEVG-G-P-RVCVQTAYGVEVEVENNPYDP-SLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETCL--A 325 (529)
T ss_pred hccccC-C-C-CcccEEEEEEEEEecCCCCCc-chheeeccccccccccccccCCCceEEEEeecCCCeEEEEEeee--c
Confidence 431100 1 1 111333677777776421111 11111 0 00 0001 114667776777777 3210 0
Q ss_pred CCcccccccccccccCCChh-hHHHHHHHHhhhCCCCCCCCcccccccccceecCC-CCCCCCeEEecCCCCCCCCeEE-
Q 023079 186 DGIDDTLSFLNRFDYSVNAN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVN- 262 (287)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~-~~~~~~~~i~~~~~~~~~~l~~- 262 (287)
+ ....+.+ ..+.+.+.+.+. ++....+...-.|+.|+..+. ..+.+-+.+|..- |++.
T Consensus 326 ~------------~~~l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~AA-----G~vhP 386 (529)
T PLN02697 326 S------------KDAMPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGAAA-----SMVHP 386 (529)
T ss_pred c------------CCCCCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCCCcccCCCeeEeehhh-----cCCCC
Confidence 0 0111222 233455555543 455566777777888883221 1112223444432 3332
Q ss_pred EeCCCCchh----hhhHHHHHHHHHHHh
Q 023079 263 LFGIESPGL----TSSMAIAEYVAAKFL 286 (287)
Q Consensus 263 ~~G~~g~G~----t~ap~~g~~va~~i~ 286 (287)
++| .|+ ..||..|+.+++.+.
T Consensus 387 sTG---y~v~~~l~~A~~~A~~ia~~l~ 411 (529)
T PLN02697 387 ATG---YSVVRSLSEAPKYASVIARILK 411 (529)
T ss_pred chh---hhHHHHHHhHHHHHHHHHHHhh
Confidence 233 245 556777777776653
No 35
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.30 E-value=5.7e-05 Score=71.21 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=53.4
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++-..+-..|.+.|++.|++++++++|+++..+++.+.+.+.++. +++|+.||.|+|.++ .+
T Consensus 103 ~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~---------------~i~A~~VI~A~G~~s-~l 166 (428)
T PRK10157 103 YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD---------------VIEAKTVILADGVNS-IL 166 (428)
T ss_pred eeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc---------------EEECCEEEEEeCCCH-HH
Confidence 34566777788999999999999999999999887776643333341 799999999999975 56
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 167 ~~~l 170 (428)
T PRK10157 167 AEKL 170 (428)
T ss_pred HHHc
Confidence 6666
No 36
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.29 E-value=9.7e-05 Score=68.45 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=52.1
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+.++...+...|.+.+.+.|++++ .++|+++..+ ++.+.|++.+|. +++|+.||.|+|.++
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~---------------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQ---------------RIQARLVIDARGFGP 141 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCC---------------EEEeCEEEECCCCch
Confidence 368999999999999999999997 5688888877 567788887772 799999999999997
No 37
>PRK06185 hypothetical protein; Provisional
Probab=98.29 E-value=8.7e-05 Score=69.22 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=54.2
Q ss_pred eeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 39 GIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
..+.-..+...|.+.+.+. |++++++++|+++..+++.+. |+ +.+| +.+++|+.||.|.|.+
T Consensus 103 ~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g--------------~~~i~a~~vI~AdG~~ 168 (407)
T PRK06185 103 AMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDG--------------PGEIRADLVVGADGRH 168 (407)
T ss_pred EEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCC--------------cEEEEeCEEEECCCCc
Confidence 3456667788888887764 899999999999988777652 43 3344 1269999999999999
Q ss_pred chHHHHHhCCCCC
Q 023079 115 APALAKRFIGLDN 127 (287)
Q Consensus 115 s~~l~~~~~~~~~ 127 (287)
|. +.+.+ ++..
T Consensus 169 S~-vr~~~-gi~~ 179 (407)
T PRK06185 169 SR-VRALA-GLEV 179 (407)
T ss_pred hH-HHHHc-CCCc
Confidence 86 66666 4443
No 38
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.29 E-value=4e-06 Score=78.06 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=59.5
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-chH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APA 117 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~ 117 (287)
.+-..++..+|.+.++++|++|+.+++|+++..+++++. |.|.++. ..+++||+||+|+|+| +..
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~g 325 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSNG 325 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc-------------cceEECCEEEEccCCCcCHH
Confidence 345678999999999999999999999999998888775 6665541 1279999999999999 999
Q ss_pred HHHHhC
Q 023079 118 LAKRFI 123 (287)
Q Consensus 118 l~~~~~ 123 (287)
|.+.+.
T Consensus 326 L~a~l~ 331 (419)
T TIGR03378 326 LVAEFD 331 (419)
T ss_pred HHhhcC
Confidence 987763
No 39
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.29 E-value=4.9e-05 Score=70.60 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=59.2
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++...+...|.+.+++.|++++++++|+++..+++++.|++++|. +++||.||.|.|.++ .+
T Consensus 108 ~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S-~v 171 (392)
T PRK08773 108 WIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR---------------RLEAALAIAADGAAS-TL 171 (392)
T ss_pred EEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hH
Confidence 35677889999999999999999999999999988888888887772 799999999999999 57
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 172 r~~~ 175 (392)
T PRK08773 172 RELA 175 (392)
T ss_pred HHhh
Confidence 7766
No 40
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.23 E-value=9.7e-05 Score=68.72 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=59.5
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++...+...|.+.+.+.|++++.+++|+++..+++.+.|++.+|. +++||.||.|.|.++. +
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~AdG~~S~-v 169 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS---------------VLEARLLVAADGARSK-L 169 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEEcCCCChH-H
Confidence 36788899999999999999999999999999988888888887772 7999999999999986 6
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 170 r~~~ 173 (403)
T PRK07333 170 RELA 173 (403)
T ss_pred HHHc
Confidence 6666
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.21 E-value=8.5e-05 Score=68.73 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..++...+...|.+.+++.| ++++ +++|+++..+++.+.|++.+|. +++||.||.|.|.||.
T Consensus 106 ~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~adG~~S~- 168 (388)
T PRK07608 106 WIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ---------------VLRADLVVGADGAHSW- 168 (388)
T ss_pred EEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC---------------EEEeeEEEEeCCCCch-
Confidence 45788899999999999887 9998 8899999887788889888772 7999999999999986
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
+.+.+
T Consensus 169 vr~~~ 173 (388)
T PRK07608 169 VRSQA 173 (388)
T ss_pred HHHhc
Confidence 66666
No 42
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.15 E-value=0.00016 Score=66.70 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=58.1
Q ss_pred eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..++-..+...|.+.+.+.| ++++.+++|+++...++++.|++++|. ++++|.||.|.|.+|.
T Consensus 101 ~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vi~adG~~S~- 164 (385)
T TIGR01988 101 YVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQ---------------QLRARLLVGADGANSK- 164 (385)
T ss_pred EEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCC---------------EEEeeEEEEeCCCCCH-
Confidence 35677889999999999888 999999999999888888888888772 7999999999999985
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
+.+.+
T Consensus 165 vr~~l 169 (385)
T TIGR01988 165 VRQLA 169 (385)
T ss_pred HHHHc
Confidence 55655
No 43
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.14 E-value=0.00016 Score=66.85 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=58.2
Q ss_pred eeecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 39 GIVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..++...+...|.+.+.+ .|++++.+++|+++..+++++.|++++|. +++||.||.|.|.||.
T Consensus 100 ~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~AdG~~S~- 163 (382)
T TIGR01984 100 YVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQ---------------QLRAKLLIAADGANSK- 163 (382)
T ss_pred EEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCChH-
Confidence 347888999999999988 49999999999999888888888887762 7999999999999975
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
+.+.+
T Consensus 164 vr~~l 168 (382)
T TIGR01984 164 VRELL 168 (382)
T ss_pred HHHHc
Confidence 66666
No 44
>PLN02463 lycopene beta cyclase
Probab=98.03 E-value=0.00035 Score=66.23 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=54.4
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+.++...+...|.+.+.+.|++++ .++|++++..++++.|++++|. +++|+.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~---------------~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGV---------------KIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECcCCCcC
Confidence 568999999999999999999997 4799999988888889998883 7999999999999765
No 45
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.99 E-value=0.00073 Score=63.02 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=57.3
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
.++...+..+|.+.+++.|++++++++|++++..++++.|++.+|. +++||.||.|.|.|| .+-
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vVgAdG~~S-~vR 171 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR---------------QLRAPLVVAADGANS-AVR 171 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hhH
Confidence 4566777788888888889999999999999988888988888772 799999999999999 566
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 172 ~~l 174 (405)
T PRK05714 172 RLA 174 (405)
T ss_pred Hhc
Confidence 666
No 46
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.96 E-value=0.00067 Score=62.85 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=53.2
Q ss_pred ecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 41 VDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
++-..+-..|.+.+.+ .|++++++++|+++..++++|.|++++|. +++||.||.|.|.|+. +.
T Consensus 109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr 172 (395)
T PRK05732 109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGE---------------TLTGRLLVAADGSHSA-LR 172 (395)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCChh-hH
Confidence 4445566777777665 48999999999999888888989887772 7999999999999985 66
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 173 ~~~ 175 (395)
T PRK05732 173 EAL 175 (395)
T ss_pred Hhh
Confidence 666
No 47
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.93 E-value=3.5e-05 Score=73.99 Aligned_cols=70 Identities=21% Similarity=0.246 Sum_probs=60.3
Q ss_pred ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079 30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV 108 (287)
Q Consensus 30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV 108 (287)
.+|++.|.+|. ..++.+|.+.++++|++|+++++|++|..++++ +.|++.+|. +++||+||
T Consensus 218 ~~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~---------------~~~ad~vV 279 (493)
T TIGR02730 218 YGGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE---------------KIYAKRIV 279 (493)
T ss_pred cceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC---------------EEEcCEEE
Confidence 46889999998 579999999999999999999999999887664 468888772 79999999
Q ss_pred EcCCCCchH
Q 023079 109 NSAGLSAPA 117 (287)
Q Consensus 109 ~aaG~~s~~ 117 (287)
+|+|+|...
T Consensus 280 ~a~~~~~~~ 288 (493)
T TIGR02730 280 SNATRWDTF 288 (493)
T ss_pred ECCChHHHH
Confidence 999998543
No 48
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.92 E-value=0.0017 Score=60.13 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=98.7
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++...+-..+.+.+++.|+. +.++.|+++...++.+.|++++|. +++|+.||.|.|..+. .
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~~-~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~a~~VvDa~g~~~~-~ 144 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGVI-RLNARVTSIEETGDGVLVVLADGR---------------TIRARVVVDARGPSSP-K 144 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCeE-EEccEEEEEEecCceEEEEECCCC---------------EEEeeEEEECCCcccc-c
Confidence 4789999999999999955554 557899999998888888998883 8999999999996555 1
Q ss_pred HHHhCCCCCcccCCccccceEEEEEcCCCCCC-CCc-eeeeCCCC-CCc-eeEEeeecCCcEEECCCccccCCccccccc
Q 023079 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAP-FKH-LIYPIPED-GGL-GVHVTLDLDGQIKFGPDVEWIDGIDDTLSF 194 (287)
Q Consensus 119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~-~~~-~i~~~~~~-~~~-~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~ 194 (287)
.. ...... ..|..+.++.+...+ ... .-|.++.. .+. -+|+.|...++.+|..|.- ..
T Consensus 145 ~~-----~~~~Q~----f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~f-s~-------- 206 (374)
T PF05834_consen 145 AR-----PLGLQH----FYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSF-SP-------- 206 (374)
T ss_pred cc-----ccccce----eEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEE-cC--------
Confidence 11 111112 456666665431111 111 11222222 112 2566787778888864421 11
Q ss_pred ccccccCCChhh-HHHHHHHHhhhCCCCCCCCccccccccccee
Q 023079 195 LNRFDYSVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKL 237 (287)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~ 237 (287)
...++.+. .+.+.+.+.+ -++...+|.+.-.|+.|+.
T Consensus 207 ----~~~~~~~~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~ 244 (374)
T PF05834_consen 207 ----RPALPEEELKARLRRYLER--LGIDDYEILEEERGVIPMT 244 (374)
T ss_pred ----CCCCCHHHHHHHHHHHHHH--cCCCceeEEEeecceeecc
Confidence 11123333 3455556655 3677788888899999993
No 49
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.92 E-value=0.00063 Score=63.06 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=56.7
Q ss_pred eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.++...+...|.+.+++. |++++++++|+++..+++++.|++++|. +++||.||.|.|.+|. +
T Consensus 108 ~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-v 171 (391)
T PRK08020 108 MVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE---------------EIQAKLVIGADGANSQ-V 171 (391)
T ss_pred EEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC---------------EEEeCEEEEeCCCCch-h
Confidence 467778888888888876 9999999999999888788888887772 7999999999999995 6
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 172 R~~~ 175 (391)
T PRK08020 172 RQMA 175 (391)
T ss_pred HHHc
Confidence 5655
No 50
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.91 E-value=0.0016 Score=60.74 Aligned_cols=71 Identities=25% Similarity=0.285 Sum_probs=58.3
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++-..+.+.|++.|++.|++++.++.|.++..+++++.+.+..+. .+++|++||.|.|+.+ .
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--------------~e~~a~~vI~AdG~~s-~ 153 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--------------DEVRAKVVIDADGVNS-A 153 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--------------EEEEcCEEEECCCcch-H
Confidence 667889999999999999999999999999999999887765544441 2899999999999864 4
Q ss_pred HHHHhC
Q 023079 118 LAKRFI 123 (287)
Q Consensus 118 l~~~~~ 123 (287)
+.+.++
T Consensus 154 l~~~lg 159 (396)
T COG0644 154 LARKLG 159 (396)
T ss_pred HHHHhC
Confidence 556663
No 51
>PRK06847 hypothetical protein; Provisional
Probab=97.87 E-value=0.0047 Score=56.83 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=58.2
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++...+...|.+.+.+.|++++.+++|++++..++.+.|.+.+|. +++||.||.|.|.++.-
T Consensus 101 ~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 101 GGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGT---------------TGRYDLVVGADGLYSKV 165 (375)
T ss_pred cccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCC---------------EEEcCEEEECcCCCcch
Confidence 345677888999999998899999999999999888888888887772 79999999999999876
Q ss_pred HHHH
Q 023079 118 LAKR 121 (287)
Q Consensus 118 l~~~ 121 (287)
-...
T Consensus 166 r~~l 169 (375)
T PRK06847 166 RSLV 169 (375)
T ss_pred hhHh
Confidence 5433
No 52
>PRK10015 oxidoreductase; Provisional
Probab=97.78 E-value=0.0017 Score=61.37 Aligned_cols=67 Identities=24% Similarity=0.255 Sum_probs=52.0
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+.-..+-..|.+.|++.|++++.+++|+++..+++++. |.+.+. +++|+.||.|.|.++ .
T Consensus 103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~----------------~i~A~~VI~AdG~~s-~ 165 (429)
T PRK10015 103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD----------------ILEANVVILADGVNS-M 165 (429)
T ss_pred eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe----------------EEECCEEEEccCcch-h
Confidence 3445566667788889999999999999999988777765 555433 799999999999975 4
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
+.+.+
T Consensus 166 v~~~l 170 (429)
T PRK10015 166 LGRSL 170 (429)
T ss_pred hhccc
Confidence 55555
No 53
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.75 E-value=0.00012 Score=66.89 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=59.6
Q ss_pred eEEcCCceeecH-----HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCE
Q 023079 32 ALLSPASGIVDS-----HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKL 106 (287)
Q Consensus 32 al~~p~~g~vdp-----~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~ 106 (287)
.++..+.|++-| ..++.+|.+++++.||+++++++|.+++.++....|.|++|. +|+||.
T Consensus 94 ~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~---------------~i~~d~ 158 (408)
T COG2081 94 ALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE---------------TVKCDS 158 (408)
T ss_pred eeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCC---------------EEEccE
Confidence 567788887755 488999999999999999999999999998888999999992 799999
Q ss_pred EEEcCCC
Q 023079 107 VVNSAGL 113 (287)
Q Consensus 107 VV~aaG~ 113 (287)
+|+|+|.
T Consensus 159 lilAtGG 165 (408)
T COG2081 159 LILATGG 165 (408)
T ss_pred EEEecCC
Confidence 9999994
No 54
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.70 E-value=0.0083 Score=55.72 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=53.9
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
.++-..+-..|.+.|.+.|++++.. .|+++...++.+.|++.++. +...++..+++|+.||.|.|.+|. +.
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~-------~~~~~~~~~i~a~~VI~AdG~~S~-v~ 158 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPK-------KGAGGEKGSVEADVVIGADGANSP-VA 158 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEecc-------ccCCCcceEEEeCEEEECCCCCcH-HH
Confidence 4777788888999999999999865 69999888788877655320 000112347999999999999884 55
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 159 r~l 161 (388)
T TIGR02023 159 KEL 161 (388)
T ss_pred HHc
Confidence 666
No 55
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.69 E-value=0.00021 Score=69.96 Aligned_cols=72 Identities=18% Similarity=0.109 Sum_probs=57.2
Q ss_pred EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEec-CEEEE
Q 023079 34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIP-KLVVN 109 (287)
Q Consensus 34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a-~~VV~ 109 (287)
+.+..+.+++..++.+|.+.|+++|++|+++++|+++..+++++. |.. .++ ...++| +.||+
T Consensus 207 ~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~--------------~~~i~a~k~VVl 272 (581)
T PRK06134 207 HGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGG--------------LQEIRARKGVVL 272 (581)
T ss_pred ccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCc--------------EEEEEeCCEEEE
Confidence 345566789999999999999999999999999999987766553 443 233 236889 99999
Q ss_pred cCCCCchHHH
Q 023079 110 SAGLSAPALA 119 (287)
Q Consensus 110 aaG~~s~~l~ 119 (287)
|+|.|+..+.
T Consensus 273 AtGg~~~n~~ 282 (581)
T PRK06134 273 AAGGFPHDPA 282 (581)
T ss_pred cCCCcccCHH
Confidence 9999997653
No 56
>PLN02612 phytoene desaturase
Probab=97.68 E-value=0.0061 Score=59.66 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
|..++..|++..+++|++|+++++|++|..++++ +.|++.+|. .++||+||+|+.+.
T Consensus 307 ~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~---------------~~~ad~VI~a~p~~ 365 (567)
T PLN02612 307 PERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGS---------------VVEGDVYVSATPVD 365 (567)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCc---------------EEECCEEEECCCHH
Confidence 3678899999888899999999999999886444 347776662 79999999998763
No 57
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.66 E-value=0.00017 Score=60.33 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=48.5
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
......+...|...+++.+.+++++++|+++.+.+++|.|++.+++ +++|++||+|+|.++..
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~---------------~~~a~~VVlAtG~~~~p 140 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGR---------------TIRADRVVLATGHYSHP 140 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------------EEEEEEEEE---SSCSB
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecc---------------eeeeeeEEEeeeccCCC
Confidence 4566677777777888999999999999999999888999998883 79999999999986543
No 58
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.65 E-value=0.002 Score=59.60 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=54.8
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
.++...+...|.+.+.+++...+.+++|++++.+++++.|++++|. +++||.||.|.|.+|. +.
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr 170 (388)
T PRK07494 107 NIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGT---------------TLSARLVVGADGRNSP-VR 170 (388)
T ss_pred EeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCC---------------EEEEeEEEEecCCCch-hH
Confidence 5677788899998888875433779999999988888999887772 7999999999999985 65
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 171 ~~~ 173 (388)
T PRK07494 171 EAA 173 (388)
T ss_pred Hhc
Confidence 665
No 59
>PRK07233 hypothetical protein; Provisional
Probab=97.63 E-value=0.016 Score=54.28 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=52.2
Q ss_pred EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079 33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG 112 (287)
Q Consensus 33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 112 (287)
++.|.+| ...++.+|++.++++|++++.+++|++|+.+++++.+.+.++. +++||+||+|+.
T Consensus 190 ~~~~~gG---~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~---------------~~~ad~vI~a~p 251 (434)
T PRK07233 190 LGYLEGG---FATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGE---------------EEDFDAVISTAP 251 (434)
T ss_pred EeccCCC---HHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCc---------------eEECCEEEECCC
Confidence 5566666 3679999999999999999999999999988877765444442 799999999998
Q ss_pred CC
Q 023079 113 LS 114 (287)
Q Consensus 113 ~~ 114 (287)
+.
T Consensus 252 ~~ 253 (434)
T PRK07233 252 PP 253 (434)
T ss_pred HH
Confidence 63
No 60
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.61 E-value=0.0047 Score=57.70 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=52.0
Q ss_pred ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
+....+...|.+.+.+. |++++++++|++++.+++.+.|++.++. .+.+++||.||.|.|.+| .+.
T Consensus 118 ~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~------------~~~~i~adlvIgADG~~S-~vR 184 (415)
T PRK07364 118 GEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEG------------KQQTLQSKLVVAADGARS-PIR 184 (415)
T ss_pred EecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCC------------cceEEeeeEEEEeCCCCc-hhH
Confidence 34456778888777765 7999999999999888778877765331 123699999999999998 444
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 185 ~~~ 187 (415)
T PRK07364 185 QAA 187 (415)
T ss_pred HHh
Confidence 555
No 61
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.57 E-value=0.00029 Score=67.67 Aligned_cols=68 Identities=25% Similarity=0.285 Sum_probs=58.3
Q ss_pred ceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079 30 VKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV 108 (287)
Q Consensus 30 ~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV 108 (287)
.+|+|.|.+|. ..++.+|.+.++++|++|+++++|++|..++++ +.|++.+|. +++||+||
T Consensus 208 ~~g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~---------------~~~ad~VI 269 (502)
T TIGR02734 208 EWGVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGE---------------RLDADAVV 269 (502)
T ss_pred hceEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC---------------EEECCEEE
Confidence 46788888886 689999999999999999999999999987765 578888872 79999999
Q ss_pred EcCCCCc
Q 023079 109 NSAGLSA 115 (287)
Q Consensus 109 ~aaG~~s 115 (287)
+|++...
T Consensus 270 ~a~~~~~ 276 (502)
T TIGR02734 270 SNADLHH 276 (502)
T ss_pred ECCcHHH
Confidence 9999743
No 62
>PRK08244 hypothetical protein; Provisional
Probab=97.55 E-value=0.013 Score=56.34 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=51.3
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
+.-..+-..|.+.+++.|++++.+++|+++..+++++.|+.. +| +.+++||+||.|.|.+|. +
T Consensus 97 i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g--------------~~~i~a~~vVgADG~~S~-v 161 (493)
T PRK08244 97 LPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDG--------------LRTLTSSYVVGADGAGSI-V 161 (493)
T ss_pred ecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCc--------------cEEEEeCEEEECCCCChH-H
Confidence 344456677777788889999999999999888887766543 33 127999999999999984 5
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 162 R~~l 165 (493)
T PRK08244 162 RKQA 165 (493)
T ss_pred HHhc
Confidence 5555
No 63
>PRK09126 hypothetical protein; Provisional
Probab=97.47 E-value=0.006 Score=56.50 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=51.6
Q ss_pred ecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 41 VDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
+.-..+.+.|.+.+.+ .|++++++++|++++.+++.+.|++++|. +++||.||.|.|.++. +.
T Consensus 107 ~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr 170 (392)
T PRK09126 107 VPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGR---------------RLTARLLVAADSRFSA-TR 170 (392)
T ss_pred EeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCC---------------EEEeCEEEEeCCCCch-hh
Confidence 3445566677766654 69999999999999887778888887772 7999999999999874 55
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 171 ~~~ 173 (392)
T PRK09126 171 RQL 173 (392)
T ss_pred Hhc
Confidence 555
No 64
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.46 E-value=0.00039 Score=65.07 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-----
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----- 115 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s----- 115 (287)
....++.+|.+.++++|++++++++|.++..++++ +.|+++++. ++.||.||+|+|.-|
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~---------------~~~a~~vILAtGG~S~p~~G 171 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG---------------EYEADAVILATGGKSYPKTG 171 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE---------------EEEESEEEE----SSSGGGT
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc---------------cccCCEEEEecCCCCccccC
Confidence 56788999999999999999999999999988776 889994431 899999999999765
Q ss_pred -----hHHHHHhC
Q 023079 116 -----PALAKRFI 123 (287)
Q Consensus 116 -----~~l~~~~~ 123 (287)
-.+++.+|
T Consensus 172 S~G~gy~~a~~lG 184 (409)
T PF03486_consen 172 SDGSGYRIAKKLG 184 (409)
T ss_dssp -SSHHHHHHHHTT
T ss_pred CCcHHHHHHHHCC
Confidence 44667663
No 65
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.42 E-value=0.0012 Score=60.96 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=53.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc------
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA------ 115 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s------ 115 (287)
.+...+.+|..+++++||+++++++|++| +++++.|.+..+. ..++||.||+|+|.-+
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~--------------~~~~a~~vIlAtGG~s~p~~Gs 147 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQ--------------STIEADAVVLALGGASWSQLGS 147 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCc--------------eEEecCEEEEcCCCccccccCC
Confidence 45788999999999999999999999999 4446888775431 1699999999999865
Q ss_pred ----hHHHHHhC
Q 023079 116 ----PALAKRFI 123 (287)
Q Consensus 116 ----~~l~~~~~ 123 (287)
-.+++.+|
T Consensus 148 ~g~gy~la~~lG 159 (376)
T TIGR03862 148 DGAWQQVLDQRG 159 (376)
T ss_pred CcHHHHHHHHCC
Confidence 36677774
No 66
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.42 E-value=0.0016 Score=60.86 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc-------
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA------- 115 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s------- 115 (287)
...++..|.+.+++.|++++++++|+++..+++.+.|+++++ ++.||.||+|+|.++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~----------------~i~ad~VIlAtG~~s~p~~gs~ 167 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGG----------------EYEADKVILATGGLSYPQLGST 167 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc----------------EEEcCEEEECCCCcccCCCCCC
Confidence 467888999999999999999999999988777788887543 799999999999976
Q ss_pred ---hHHHHHhC
Q 023079 116 ---PALAKRFI 123 (287)
Q Consensus 116 ---~~l~~~~~ 123 (287)
..+++.+|
T Consensus 168 G~g~~la~~lG 178 (400)
T TIGR00275 168 GDGYEIAESLG 178 (400)
T ss_pred cHHHHHHHHCC
Confidence 56777774
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.39 E-value=0.00084 Score=58.94 Aligned_cols=73 Identities=26% Similarity=0.221 Sum_probs=54.0
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCC---CCCCceeEecCEEEEcCCC
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVS---PLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~---~~~~~~~i~a~~VV~aaG~ 113 (287)
..+|+..++..|.+.|+++|++++++++|.++..+++ ++ .|.+... .+. ....+..++|+.||+|+|.
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~-------~v~~~g~~~~~~~i~Ak~VI~ATG~ 171 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWT-------PVEMAGLHVDPLTIEAKAVVDATGH 171 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccc-------cccccCCCCCcEEEEcCEEEEEeCC
Confidence 3578999999999999999999999999999987554 43 3433211 000 0113468999999999999
Q ss_pred CchHH
Q 023079 114 SAPAL 118 (287)
Q Consensus 114 ~s~~l 118 (287)
++.-.
T Consensus 172 ~a~v~ 176 (257)
T PRK04176 172 DAEVV 176 (257)
T ss_pred CcHHH
Confidence 99754
No 68
>PRK06834 hypothetical protein; Provisional
Probab=97.22 E-value=0.0032 Score=60.44 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI 123 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~ 123 (287)
..+-..|.+.+++.|++++.+++|++++.+++++.|++.+|. +++||+||.|.|.+|. +-+.+
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~---------------~i~a~~vVgADG~~S~-vR~~l- 162 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR---------------TLRAQYLVGCDGGRSL-VRKAA- 162 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCCC-cHhhc-
Confidence 455667777888889999999999999988888888876662 7999999999999984 65666
Q ss_pred CCC
Q 023079 124 GLD 126 (287)
Q Consensus 124 ~~~ 126 (287)
++.
T Consensus 163 gi~ 165 (488)
T PRK06834 163 GID 165 (488)
T ss_pred CCC
Confidence 443
No 69
>PRK06996 hypothetical protein; Provisional
Probab=97.11 E-value=0.033 Score=51.92 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=55.7
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
.++-..+...|.+.+++.|++++.++++++++..+++|.|+..++..+ .+++||.||.|-|.-+..+-
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~------------~~i~a~lvIgADG~~~s~~r 178 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA------------RTLRARIAVQAEGGLFHDQK 178 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc------------eEEeeeEEEECCCCCchHHH
Confidence 567778899999999999999999999999988888888887654211 27999999999996433333
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 179 ~~~ 181 (398)
T PRK06996 179 ADA 181 (398)
T ss_pred HHc
Confidence 554
No 70
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.10 E-value=0.0029 Score=58.92 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=65.9
Q ss_pred EEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079 33 LLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 111 (287)
Q Consensus 33 l~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa 111 (287)
++.|.-|+-.-...+..+.+..+..|++|+++++|.++..+++.+ .|.+++|. .|.||+||+|.
T Consensus 162 ~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~---------------~i~~~~vvlA~ 226 (486)
T COG2509 162 IYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGE---------------EIEADYVVLAP 226 (486)
T ss_pred ccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCc---------------EEecCEEEEcc
Confidence 567788888888999999999999999999999999999988754 58888883 89999999999
Q ss_pred CCCchHHHHHh
Q 023079 112 GLSAPALAKRF 122 (287)
Q Consensus 112 G~~s~~l~~~~ 122 (287)
|..+...++++
T Consensus 227 Grsg~dw~~~l 237 (486)
T COG2509 227 GRSGRDWFEML 237 (486)
T ss_pred CcchHHHHHHH
Confidence 99888887766
No 71
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.03 E-value=0.0031 Score=58.55 Aligned_cols=68 Identities=16% Similarity=0.319 Sum_probs=56.6
Q ss_pred eecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 40 IVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.++...+...|.+.+.+.| ++++++++|+++..+++++.|++.+|. +++||.||.|.|.||.-.
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~~r 169 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGN---------------RWTGDALIGCDGVKSVVR 169 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCC---------------EEecCEEEECCCcChHHH
Confidence 4677888899999888764 999999999999887778888887772 799999999999998765
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
....
T Consensus 170 ~~~~ 173 (396)
T PRK08163 170 QSLV 173 (396)
T ss_pred hhcc
Confidence 4433
No 72
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.02 E-value=0.0027 Score=59.97 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=52.6
Q ss_pred cCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE---EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079 35 SPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM---NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 110 (287)
Q Consensus 35 ~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~---~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 110 (287)
.|.++..+...++..|.+.+++.|++++++++|+++..+ ++++ .+.+.++ +...+.++.||+|
T Consensus 121 ~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~~~a~~VVlA 187 (439)
T TIGR01813 121 RPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-------------GIYIKAAKAVVLA 187 (439)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-------------eEEEEecceEEEe
Confidence 344555677889999999999999999999999999875 3433 3333333 1235789999999
Q ss_pred CCCCch
Q 023079 111 AGLSAP 116 (287)
Q Consensus 111 aG~~s~ 116 (287)
+|.|+.
T Consensus 188 tGg~~~ 193 (439)
T TIGR01813 188 TGGFGS 193 (439)
T ss_pred cCCCCC
Confidence 999987
No 73
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.90 E-value=0.004 Score=61.04 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=53.4
Q ss_pred CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCC
Q 023079 36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGL 113 (287)
Q Consensus 36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~ 113 (287)
+.....++..++.+|.+.++++|++++++++|+++..+++++. |.+.++. +..++.| +.||+|+|.
T Consensus 213 ~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g------------~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 213 RGTRLVMGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGG------------VRRRIRARGGVVLATGG 280 (578)
T ss_pred CCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCC------------eEEEEEccceEEECCCC
Confidence 3444567888999999999999999999999999887666553 5544331 1346886 689999999
Q ss_pred CchH
Q 023079 114 SAPA 117 (287)
Q Consensus 114 ~s~~ 117 (287)
++..
T Consensus 281 ~~~n 284 (578)
T PRK12843 281 FNRH 284 (578)
T ss_pred cccC
Confidence 9874
No 74
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.89 E-value=0.13 Score=50.07 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079 45 SLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121 (287)
Q Consensus 45 ~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~ 121 (287)
.+-..|.+.+.+. |++++++++|++++.+++++.++.. ++ +.+++||.||.|.|.+|. +-+.
T Consensus 126 ~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g--------------~~~i~ad~vVgADG~~S~-vR~~ 190 (547)
T PRK08132 126 YVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDG--------------PYTLEADWVIACDGARSP-LREM 190 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCC--------------cEEEEeCEEEECCCCCcH-HHHH
Confidence 4456666667665 7999999999999988777765543 33 136999999999999986 5565
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 191 l 191 (547)
T PRK08132 191 L 191 (547)
T ss_pred c
Confidence 5
No 75
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.86 E-value=0.0053 Score=59.24 Aligned_cols=71 Identities=18% Similarity=0.124 Sum_probs=53.9
Q ss_pred EcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079 34 LSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNS 110 (287)
Q Consensus 34 ~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 110 (287)
+.|.++......++..|.+.++++|++++++++|+++..+++++. |. +.++ +...+.|+.||+|
T Consensus 180 ~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g-------------~~~~i~a~~VVlA 246 (506)
T PRK06481 180 HRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGK-------------ETKTISSKAVVVT 246 (506)
T ss_pred eccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCC-------------eEEEEecCeEEEe
Confidence 445555666678899999999999999999999999987666542 43 3333 1247999999999
Q ss_pred CCCCchH
Q 023079 111 AGLSAPA 117 (287)
Q Consensus 111 aG~~s~~ 117 (287)
+|.|+..
T Consensus 247 tGG~~~n 253 (506)
T PRK06481 247 TGGFGAN 253 (506)
T ss_pred CCCcccC
Confidence 9988753
No 76
>PRK08013 oxidoreductase; Provisional
Probab=96.84 E-value=0.11 Score=48.41 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=54.0
Q ss_pred eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.+.-..+...|.+.+.+. |++++++++|++++..++.+.|+..+|. +++||.||-|-|.+| .+
T Consensus 107 ~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~a~lvVgADG~~S-~v 170 (400)
T PRK08013 107 IIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS---------------MLTARLVVGADGANS-WL 170 (400)
T ss_pred EEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC---------------EEEeeEEEEeCCCCc-HH
Confidence 355566778888888775 8999999999999888788888887772 799999999999997 44
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
-+.+
T Consensus 171 R~~~ 174 (400)
T PRK08013 171 RNKA 174 (400)
T ss_pred HHHc
Confidence 4555
No 77
>PRK11445 putative oxidoreductase; Provisional
Probab=96.83 E-value=0.38 Score=44.01 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=51.1
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.++-..+-..|.+ +...|++++.++.|+++..++++|.|++ ++|. ..+++||.||.|.|..|. +
T Consensus 95 ~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~-------------~~~i~a~~vV~AdG~~S~-v 159 (351)
T PRK11445 95 NIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGYHVIFRADGW-------------EQHITARYLVGADGANSM-V 159 (351)
T ss_pred cccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCc-------------EEEEEeCEEEECCCCCcH-H
Confidence 4676666666655 4567899999999999998888888875 4441 236999999999999875 4
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 160 r~~l 163 (351)
T PRK11445 160 RRHL 163 (351)
T ss_pred hHHh
Confidence 4544
No 78
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.83 E-value=0.11 Score=48.07 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...|.+++.+ .|++++.+++|++++.+++++.|++++|. +++||.||.|.|.+|.-
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGA---------------EIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCCchh
Confidence 3455667666655 47999999999999988888888888773 89999999999998853
No 79
>PRK06126 hypothetical protein; Provisional
Probab=96.79 E-value=0.14 Score=49.77 Aligned_cols=70 Identities=13% Similarity=0.200 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079 42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~ 120 (287)
+-..+...|.+.+++. |++++++++|+++..+++++.++..+..+ +++.+++||.||.|.|++|. +-+
T Consensus 124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~----------g~~~~i~ad~vVgADG~~S~-VR~ 192 (545)
T PRK06126 124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDG----------GESLTIRADYLVGCDGARSA-VRR 192 (545)
T ss_pred CHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCC----------CcEEEEEEEEEEecCCcchH-HHH
Confidence 3344566677777664 89999999999999887777665433111 12357999999999999985 666
Q ss_pred Hh
Q 023079 121 RF 122 (287)
Q Consensus 121 ~~ 122 (287)
.+
T Consensus 193 ~l 194 (545)
T PRK06126 193 SL 194 (545)
T ss_pred hc
Confidence 66
No 80
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=96.73 E-value=0.0095 Score=52.21 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=52.1
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC--eE-EEEecCCcccccCCCCCCC---CCceeEecCEEEEcCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN--CM-NVYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGL 113 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~-~V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~ 113 (287)
..|...++..|.+.|.++|+++++++.|.++..+++ ++ .|.+.. ..+... .++..++|+.||.|+|.
T Consensus 96 ~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~-------~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 96 VADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINW-------SAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred EeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCC-------ccccccCCCCCCEEEEcCEEEEeecC
Confidence 347789999999999999999999999999987665 33 355432 111111 13568999999999998
Q ss_pred Cch
Q 023079 114 SAP 116 (287)
Q Consensus 114 ~s~ 116 (287)
.+.
T Consensus 169 ~a~ 171 (254)
T TIGR00292 169 DAE 171 (254)
T ss_pred Cch
Confidence 764
No 81
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.72 E-value=0.0046 Score=59.36 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=58.2
Q ss_pred cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEE
Q 023079 29 CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLV 107 (287)
Q Consensus 29 ~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~V 107 (287)
...|++.|.+|+ ..++++|++.++++|++|+++++|..|..++++ ..|++.+| + .++||.|
T Consensus 212 ~~~G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g---~------------~~~ad~v 273 (487)
T COG1233 212 LSGGVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDG---E------------NIEADAV 273 (487)
T ss_pred ccCCeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecccc---c------------eecccee
Confidence 446788888776 789999999999999999999999999998774 66888777 2 7999999
Q ss_pred EEcCCC
Q 023079 108 VNSAGL 113 (287)
Q Consensus 108 V~aaG~ 113 (287)
|.++..
T Consensus 274 v~~~~~ 279 (487)
T COG1233 274 VSNADP 279 (487)
T ss_pred EecCch
Confidence 999988
No 82
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.71 E-value=0.0076 Score=56.39 Aligned_cols=68 Identities=21% Similarity=0.228 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
....++..|.+.++++|++|+.+++|+++..+++++. |... +| ..++|.|+.||+|+|.++..
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g-------------~~~~i~A~aVIlAtGG~~~~ 205 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADG-------------EFVRIKAKAVILATGGFGGE 205 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTC-------------EEEEEEESEEEE----BGGH
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCC-------------eEEEEeeeEEEeccCccccc
Confidence 5678889999999999999999999999999888763 5443 33 24679999999999999974
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
+++..
T Consensus 206 ~~~~~ 210 (417)
T PF00890_consen 206 LLRQY 210 (417)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 44443
No 83
>PLN02487 zeta-carotene desaturase
Probab=96.70 E-value=0.21 Score=48.95 Aligned_cols=63 Identities=8% Similarity=0.028 Sum_probs=46.6
Q ss_pred cHH-HHHHHHHHHHHHCCcEEEcCceeEEEEEeC--Ce----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 42 DSH-SLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 42 dp~-~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.+. .++..+++..+++|++|+.+++|..|..++ ++ +.|++.++..+ ..+.||.||.|+++|
T Consensus 292 g~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~------------~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 292 SPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEK------------EIVKADAYVAACDVP 359 (569)
T ss_pred CchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCc------------eEEECCEEEECCCHH
Confidence 355 488889999999999999999999998863 22 24665322111 268999999999987
Q ss_pred ch
Q 023079 115 AP 116 (287)
Q Consensus 115 s~ 116 (287)
.-
T Consensus 360 ~~ 361 (569)
T PLN02487 360 GI 361 (569)
T ss_pred HH
Confidence 33
No 84
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.69 E-value=0.0088 Score=52.92 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=50.0
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+.+..+...+.+.+++.|+++++ ++|++++..++.|.|++.++. ++++|+||+|+|.+.
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~---------------~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGK---------------EYTAKAVIIATGASA 112 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence 45567888888888999999998 899999988778888887762 799999999999864
No 85
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.64 E-value=0.01 Score=56.45 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+++.|++++++++|+++..+++++. |.+. ++ +...++|+.||+|+|.+..
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g-------------~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAG-------------GAERIRAKAVVLAAGGFES 193 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCC-------------ceEEEECCEEEECCCCCCC
Confidence 467889999999999999999999999988766653 5542 22 1247899999999998754
No 86
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.63 E-value=0.006 Score=59.58 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=53.6
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVV 108 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV 108 (287)
+++.+. +++|+..+..+|.+.+++. |++++.+ .|+++..+ ++.+ .|.+.+|. .+.|+.||
T Consensus 85 AV~~~R-aQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~---------------~I~Ad~VI 147 (617)
T TIGR00136 85 AVRATR-AQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGL---------------KFRAKAVI 147 (617)
T ss_pred cccccH-HhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCC---------------EEECCEEE
Confidence 555555 6999999999999999887 7888754 67777655 4444 58888873 79999999
Q ss_pred EcCCCCc
Q 023079 109 NSAGLSA 115 (287)
Q Consensus 109 ~aaG~~s 115 (287)
+|+|.|.
T Consensus 148 LATGtfL 154 (617)
T TIGR00136 148 ITTGTFL 154 (617)
T ss_pred EccCccc
Confidence 9999993
No 87
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.55 E-value=0.012 Score=52.96 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=54.1
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..++-..+...|.+.+++.|+++..+++|+++...++++.+...++.. +++.+++||.||-|-|.+|. +
T Consensus 106 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~----------g~~~~i~adlvVgADG~~S~-v 174 (356)
T PF01494_consen 106 HVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGED----------GEEETIEADLVVGADGAHSK-V 174 (356)
T ss_dssp EEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCT----------CEEEEEEESEEEE-SGTT-H-H
T ss_pred hhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccC----------CceeEEEEeeeecccCcccc-h
Confidence 356667888999999999999999999999999888877654433321 12347999999999999984 4
Q ss_pred HHHh
Q 023079 119 AKRF 122 (287)
Q Consensus 119 ~~~~ 122 (287)
.+.+
T Consensus 175 R~~l 178 (356)
T PF01494_consen 175 RKQL 178 (356)
T ss_dssp HHHT
T ss_pred hhhc
Confidence 4555
No 88
>PRK06184 hypothetical protein; Provisional
Probab=96.54 E-value=0.012 Score=56.53 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
..+-..|.+.+.+.|++++.+++|++++.+++++.|+.....+ ..+++||+||.|.|++|. +.+.+
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~------------~~~i~a~~vVgADG~~S~-vR~~l 174 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG------------EETVRARYLVGADGGRSF-VRKAL 174 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC------------eEEEEeCEEEECCCCchH-HHHhC
Confidence 4456677788888899999999999999887777765521110 127999999999999985 55655
No 89
>PRK07588 hypothetical protein; Provisional
Probab=96.50 E-value=0.01 Score=55.01 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...|.+.+ ..|++++++++|++++.+++++.|++++|. ++++|.||.|.|.+|.-
T Consensus 103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 103 GDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGT---------------PRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCC---------------EEEeCEEEECCCCCccc
Confidence 44555555544 448999999999999988888999988873 68999999999998855
No 90
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.48 E-value=0.014 Score=55.11 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++.+|.+.++++|++++++++|+++..+ ++.+ .|.+.++ ..+++|+.||+|+|.++.
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCccc
Confidence 3568899999999999999999999999876 3444 3554333 127999999999998765
No 91
>PRK07121 hypothetical protein; Validated
Probab=96.45 E-value=0.015 Score=55.76 Aligned_cols=63 Identities=21% Similarity=0.103 Sum_probs=48.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~~s~ 116 (287)
+...++..|.+.+++.|++|+++++|+++..++ +++ .|...+. ++...+.| +.||+|+|.++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~------------~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY------------GETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC------------CcEEEEEeCCEEEECCCCcCc
Confidence 567889999999999999999999999998763 344 3544322 11347899 999999998774
No 92
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.45 E-value=0.016 Score=46.79 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.5
Q ss_pred CcEEE-cCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 58 GTTFS-NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 58 Gv~~~-~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
|+++. ...+|+++...++++.|.+.+|. .+++|+||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDGYRVVTADGQ---------------SIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCcEEEEECCCC---------------EEEeCEEEECCCC
Confidence 54432 35699999999999999998884 7999999999995
No 93
>PRK07190 hypothetical protein; Provisional
Probab=96.43 E-value=0.014 Score=56.03 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
.+-..|.+.+++.|++++.+++|++++.+++++.|.+.+|. +++|++||.|.|.+| .+-+.+
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~---------------~v~a~~vVgADG~~S-~vR~~l 171 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGE---------------RIQSRYVIGADGSRS-FVRNHF 171 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCc---------------EEEeCEEEECCCCCH-HHHHHc
Confidence 34455556788889999999999999988888877776662 799999999999976 344445
No 94
>PRK12839 hypothetical protein; Provisional
Probab=96.40 E-value=0.018 Score=56.42 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=49.9
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEE--ecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVY--ISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLS 114 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~~ 114 (287)
.+++..++..|.+.|++.|++|+.+++|+++..+ ++++ .|. ..++ +.++ .++.||+|+|.|
T Consensus 210 ~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g--------------~~~i~aak~VVLAtGGf 275 (572)
T PRK12839 210 LVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDG--------------AVTVEATRGVVLATGGF 275 (572)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCC--------------cEEEEeCCEEEEcCCCc
Confidence 4689999999999999999999999999999764 4544 343 3333 1234 458999999999
Q ss_pred chHH
Q 023079 115 APAL 118 (287)
Q Consensus 115 s~~l 118 (287)
+...
T Consensus 276 ~~n~ 279 (572)
T PRK12839 276 PNDV 279 (572)
T ss_pred ccCH
Confidence 9743
No 95
>PRK07045 putative monooxygenase; Reviewed
Probab=96.36 E-value=0.67 Score=42.82 Aligned_cols=61 Identities=15% Similarity=0.211 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.-..+.+.|.+.+.. .|++++++++|++++..+++ +.|++++|. ++++|.||-|-|.+|.-
T Consensus 104 ~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---------------~~~~~~vIgADG~~S~v 167 (388)
T PRK07045 104 PCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE---------------RVAPTVLVGADGARSMI 167 (388)
T ss_pred cHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC---------------EEECCEEEECCCCChHH
Confidence 334567777777654 58999999999999886554 467777772 79999999999998743
No 96
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.35 E-value=0.01 Score=58.03 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=54.4
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVN 109 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~ 109 (287)
+++.+. +++|...+..+|.+.+.+. |++++ +..|.++..+++++. |.+.+|. .|.|+.||+
T Consensus 89 AV~s~R-aQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~---------------~I~Ak~VIl 151 (618)
T PRK05192 89 AVRALR-AQADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGL---------------EFRAKAVVL 151 (618)
T ss_pred ceeCcH-HhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCC---------------EEECCEEEE
Confidence 444444 4899999999999888866 88886 567888887777764 8888873 899999999
Q ss_pred cCCCCch
Q 023079 110 SAGLSAP 116 (287)
Q Consensus 110 aaG~~s~ 116 (287)
|+|.|+.
T Consensus 152 ATGTFL~ 158 (618)
T PRK05192 152 TTGTFLR 158 (618)
T ss_pred eeCcchh
Confidence 9998864
No 97
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.31 E-value=0.49 Score=43.90 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=52.8
Q ss_pred eecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 40 IVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+.-..+...|.+.+.+.+ ++++++++|+.++.+++.+.|+.+ +|. +++||.||-|=|.+|.-
T Consensus 100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~---------------~~~a~llVgADG~~S~v 164 (387)
T COG0654 100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE---------------TLDADLLVGADGANSAV 164 (387)
T ss_pred EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc---------------EEecCEEEECCCCchHH
Confidence 4556677888888888776 899999999999999888887777 772 89999999999988654
No 98
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.31 E-value=0.017 Score=55.02 Aligned_cols=65 Identities=15% Similarity=-0.005 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHHCCcE--EEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAENHGTT--FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~--~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
....+...|...|+..|+. ++++++|++++..+++|.|++.++. +...+..+|.||+|+|.++..
T Consensus 109 ~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----------~~~~~~~~d~VIvAtG~~~~P 175 (461)
T PLN02172 109 SHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----------GFSKDEIFDAVVVCNGHYTEP 175 (461)
T ss_pred CHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----------CceEEEEcCEEEEeccCCCCC
Confidence 3456677777788888987 8899999999988889999886541 012256899999999987543
No 99
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.26 E-value=0.025 Score=53.26 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..++..+|.+.++++|++++++++|+++..+++++. +.+.++. ...++||.||+|+|.+...
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~-------------~~~i~AD~VVLAtGrf~s~ 320 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHG-------------DIPLRARHFVLATGSFFSG 320 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCc-------------eEEEECCEEEEeCCCcccC
Confidence 456888898889999999999999999988777665 4444441 2369999999999976443
No 100
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.23 E-value=0.4 Score=44.72 Aligned_cols=73 Identities=22% Similarity=0.215 Sum_probs=48.4
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEE---eCCeEEEEe--cC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHL---EGNCMNVYI--SE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~---~~~~~~V~t--~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
.++=..+-..|.+.|.+.|++++.++ +.++.. .++.+.|+. .+ + ...++..+++|+.||.|.|+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~---------~~~g~~~~i~a~~VIgADG~ 158 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSG---------GPSGTRCTLEVDAVIGADGA 158 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeecccc---------ccCCCccEEEeCEEEECCCc
Confidence 36666666778888999999998775 767753 234455542 22 0 00012347999999999999
Q ss_pred CchHHHHHhC
Q 023079 114 SAPALAKRFI 123 (287)
Q Consensus 114 ~s~~l~~~~~ 123 (287)
.| .+.+.++
T Consensus 159 ~S-~v~~~~g 167 (398)
T TIGR02028 159 NS-RVAKEID 167 (398)
T ss_pred ch-HHHHHhC
Confidence 88 5666663
No 101
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.20 E-value=0.027 Score=52.12 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
.+...+.+.++++|++++.+++|.++..+++.+.|.+.+|. ++.+|.||+|+|...+ .+++.+
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vI~a~G~~p~~~l~~~~ 247 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGR---------------SIEVDAVIAAAGLRPNTALARRA 247 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCc---------------EEECCEEEECcCCCcchHHHHHC
Confidence 45566677788899999999999999877667778887773 7999999999999875 465555
No 102
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.18 E-value=0.66 Score=44.13 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=49.1
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.++=..+-..|.+.|.+.|+++++. .++++..+ ++.+.|++.+... -+..++..+++|+.||-|.|++|
T Consensus 128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~------~~~~g~~~~v~a~~VIgADG~~S- 199 (450)
T PLN00093 128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDS------GSGAGTPKTLEVDAVIGADGANS- 199 (450)
T ss_pred EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccc------cccCCCccEEEeCEEEEcCCcch-
Confidence 3677777788888899999999875 57777643 2345555432100 00001123799999999999987
Q ss_pred HHHHHh
Q 023079 117 ALAKRF 122 (287)
Q Consensus 117 ~l~~~~ 122 (287)
.+.+.+
T Consensus 200 ~vrr~l 205 (450)
T PLN00093 200 RVAKDI 205 (450)
T ss_pred HHHHHh
Confidence 555666
No 103
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.15 E-value=0.017 Score=55.42 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=50.2
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 110 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 110 (287)
|.+.+.+| ...++.+|++.++++|++|+++++|++|..++++. .|.+.++.++ ...+++||.||.+
T Consensus 223 G~~~~~GG---~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~----------~~~~~~ad~VI~~ 289 (492)
T TIGR02733 223 GLWHLHGS---MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQ----------EDLNVKADDVVAN 289 (492)
T ss_pred CceeecCc---HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCC----------ceEEEECCEEEEC
Confidence 34445554 36799999999999999999999999999887653 3443333110 0126899999999
Q ss_pred CCCC
Q 023079 111 AGLS 114 (287)
Q Consensus 111 aG~~ 114 (287)
+.++
T Consensus 290 ~~~~ 293 (492)
T TIGR02733 290 LPPQ 293 (492)
T ss_pred CCHH
Confidence 9874
No 104
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.11 E-value=0.031 Score=54.80 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCCchHH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAPAL 118 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~~l 118 (287)
...++..|.+.++++|++|+.+++|+++..+++++. |...++. .+..+.++ .||+|+|.|+...
T Consensus 213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~------------~~~~i~a~k~VVlAtGg~~~n~ 278 (574)
T PRK12842 213 GNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAG------------GERRITARRGVVLACGGFSHDL 278 (574)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCC------------ceEEEEeCCEEEEcCCCccchH
Confidence 456788888889999999999999999988777653 5443321 12357886 7999999998543
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.09 E-value=0.03 Score=54.17 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=52.2
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..+..+...+.+.+++.|++++.+++|.++...++.+.|.+.+|. +++++.||+|+|+..
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~---------------~i~a~~vViAtG~~~ 322 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA---------------VLKAKTVILATGARW 322 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEcCEEEECCCCCc
Confidence 467788999999999999999999999999887778888887762 799999999999854
No 106
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.05 E-value=0.038 Score=51.07 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=55.0
Q ss_pred eeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 39 GIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+.-..+...|.+.+.+.+ ++++++++|+++..+++++.|.++++ +++||.||.|-|.+|.-
T Consensus 99 ~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~----------------~~~adlvIgADG~~S~v 162 (374)
T PRK06617 99 YVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK----------------QIKCNLLIICDGANSKV 162 (374)
T ss_pred EEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC----------------EEeeCEEEEeCCCCchh
Confidence 35667788888988888775 89999999999988888888888766 89999999999998754
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
-+.+
T Consensus 163 -R~~l 166 (374)
T PRK06617 163 -RSHY 166 (374)
T ss_pred -HHhc
Confidence 3444
No 107
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=95.94 E-value=0.37 Score=44.54 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=98.2
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
+.++-.++-+.+.+.+.. + ++.+++|+++ +.+++.+ .+|. +++|+.||.|.|..+...
T Consensus 84 ~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v--~~~~v~l--~dg~---------------~~~A~~VI~A~G~~s~~~ 141 (370)
T TIGR01789 84 RSMTSTRFHEGLLQAFPE-G--VILGRKAVGL--DADGVDL--APGT---------------RINARSVIDCRGFKPSAH 141 (370)
T ss_pred eEEEHHHHHHHHHHhhcc-c--EEecCEEEEE--eCCEEEE--CCCC---------------EEEeeEEEECCCCCCCcc
Confidence 456666777776654433 3 6668899888 3455555 4552 899999999999886533
Q ss_pred HHHhCCCCCcccCCccccceEEEEEcCCCCCCCCc-ee--eeCCCCC-CceeEEeeecCCcEEECCCccccCCccccccc
Q 023079 119 AKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKH-LI--YPIPEDG-GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSF 194 (287)
Q Consensus 119 ~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~-~i--~~~~~~~-~~~~~~~~~~~g~l~iG~~~~~~~~~~~~~~~ 194 (287)
.. . + .....|..+.+..+. ..+. .+ +.++... ..-+|+.|-.++++++..|. +.+
T Consensus 142 ~~-~-~--------~Q~f~G~~~r~~~p~--~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~-~s~-------- 200 (370)
T TIGR01789 142 LK-G-G--------FQVFLGREMRLQEPH--GLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTY-YAD-------- 200 (370)
T ss_pred cc-c-e--------eeEEEEEEEEEcCCC--CCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEe-ccC--------
Confidence 22 1 1 111567777775441 1111 11 2222111 12245577777888874221 110
Q ss_pred ccccccCCChhh-HHHHHHHHhhhCCCCCCCCcccccccccceecCC--C---CCCCCe-EEecCCCCCCCCeEEEeCCC
Q 023079 195 LNRFDYSVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--R---QSPIDF-VIQGDDTHGVPGLVNLFGIE 267 (287)
Q Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~~G~r~~~~~~--~---~~~~~~-~i~~~~~~~~~~l~~~~G~~ 267 (287)
...++.+. .+.+.+.+.+. .+....+.+...|+.|+.... . ...+.. .||-.- +.+.-+ .
T Consensus 201 ----~~~l~~~~l~~~l~~~~~~~--g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AA-----g~~~P~--t 267 (370)
T TIGR01789 201 ----DPLLDRNALSQRIDQYARAN--GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRA-----GLTHPT--T 267 (370)
T ss_pred ----CCCCCHHHHHHHHHHHHHHh--CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeeccc-----cccccc--c
Confidence 01223333 33444555443 456566777667888874320 0 011112 244432 333221 2
Q ss_pred CchhhhhHHHHHHHHHHH
Q 023079 268 SPGLTSSMAIAEYVAAKF 285 (287)
Q Consensus 268 g~G~t~ap~~g~~va~~i 285 (287)
|-|+..+-..++.+++.+
T Consensus 268 Gyg~~~a~~~a~~la~~~ 285 (370)
T TIGR01789 268 GYSLPVAVENADALAAQP 285 (370)
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 236777766666666543
No 108
>PRK09897 hypothetical protein; Provisional
Probab=95.90 E-value=0.039 Score=53.51 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHCC--cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 48 LSLVGEAENHG--TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 48 ~~l~~~a~~~G--v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+++.+.+.| ++++.+++|++++..+++|.|++.++. ..+.||+||+|+|...+.
T Consensus 111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------------~~i~aD~VVLAtGh~~p~ 168 (534)
T PRK09897 111 LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------------PSETFDLAVIATGHVWPD 168 (534)
T ss_pred HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------------eEEEcCEEEECCCCCCCC
Confidence 33455566677 788888999999988888999886541 179999999999985543
No 109
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.87 E-value=0.032 Score=53.24 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
...++..|.+.+++.|++++++ .++.+..+++++. |.+. +. .+.|+.||+|||.|+...
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~-g~---------------~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLD-GE---------------LLKFDATVIATGGFSGLF 178 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEEC-CE---------------EEEeCeEEECCCcCcCCC
Confidence 4578899999999999999876 7888876666653 6553 41 799999999999998754
No 110
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.83 E-value=0.029 Score=53.85 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
....++..|.+.+++ .|+++++++.|+++..+++.+. |.+.+.. ....+.|+.||+|+|.|+..
T Consensus 126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~------------~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 126 TGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRE------------TVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECC------------cEEEEEcCEEEECCCcccCC
Confidence 457888999999987 6999999999999987666543 5443320 12368999999999999863
No 111
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.82 E-value=0.039 Score=52.52 Aligned_cols=65 Identities=17% Similarity=0.246 Sum_probs=49.3
Q ss_pred CceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 37 ASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
-+.++|-.++-+.|.+.|++.||+++.++ |+++...++ .+ .|++.+|. +++||.||-|+|..
T Consensus 147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~---------------~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGR---------------TIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSE---------------EEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCC---------------EEEEeEEEECCCcc
Confidence 45689999999999999999999999875 777776644 34 58888883 79999999999986
Q ss_pred chH
Q 023079 115 APA 117 (287)
Q Consensus 115 s~~ 117 (287)
+.-
T Consensus 211 s~L 213 (454)
T PF04820_consen 211 SLL 213 (454)
T ss_dssp -CC
T ss_pred chh
Confidence 553
No 112
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.82 E-value=0.046 Score=52.87 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=51.3
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.....+...+.+.+++.|++++.+++|.++..+++.+.|++.+|. .+++|+||+|+|+..
T Consensus 264 ~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 264 TTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE---------------VLKAKSVIVATGARW 323 (515)
T ss_pred CCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCc
Confidence 356778888888889999999999999999887777888887772 799999999999864
No 113
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.76 E-value=0.044 Score=51.83 Aligned_cols=58 Identities=12% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...+.+.++++|++++++++|+++..+++.+.|+++++ ++.+|.||+|+|.+.+.
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g----------------~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA----------------QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC----------------eEEeCEEEEeecCCcCC
Confidence 45667777888999999999999999987766777777666 79999999999988764
No 114
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.73 E-value=0.057 Score=50.39 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=51.5
Q ss_pred ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
+.-..+...|.+.+.+. |++++.+++|+++..+++.+.|++++|. +++||.||.|-|.+|. +.
T Consensus 108 ~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~lvIgADG~~S~-vR 171 (405)
T PRK08850 108 VENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQ---------------ALTAKLVVGADGANSW-LR 171 (405)
T ss_pred EEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCC---------------EEEeCEEEEeCCCCCh-hH
Confidence 33445666777777664 7999999999999888788888888773 7999999999999864 34
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
+.+
T Consensus 172 ~~~ 174 (405)
T PRK08850 172 RQM 174 (405)
T ss_pred HHc
Confidence 444
No 115
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.72 E-value=0.027 Score=52.76 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=48.2
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++-..|...|.+.+. ...++.+++|++++..+++|.|++++|. +++||.||.|.|.||.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGT---------------EYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCC---------------EEEeeEEEECCCccHH
Confidence 566678888876653 3567789999999988888999888773 7999999999999985
No 116
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.037 Score=49.81 Aligned_cols=64 Identities=27% Similarity=0.288 Sum_probs=54.5
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+.+....++..+.+.++..|+++.. ..|.+++..++.+.|+|+++ +++|+.||+|+|+....
T Consensus 55 ~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~----------------~~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 55 PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG----------------TYEAKAVIIATGAGARK 117 (305)
T ss_pred ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC----------------eEEEeEEEECcCCcccC
Confidence 33467789999999999999999987 78888877666788999999 79999999999998776
Q ss_pred H
Q 023079 118 L 118 (287)
Q Consensus 118 l 118 (287)
+
T Consensus 118 ~ 118 (305)
T COG0492 118 L 118 (305)
T ss_pred C
Confidence 5
No 117
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.71 E-value=0.049 Score=53.80 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=48.3
Q ss_pred ecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeE-EEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCM-NVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~-~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+++..+...|.+.++++| +++++++.|+++..+++++ .|. +.++ ....+.|+.||+|+|.|+
T Consensus 129 ~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 129 INGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVREN-------------KFYVFKAKAVIVATGGAA 195 (608)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCC-------------cEEEEECCEEEECCCchh
Confidence 356788888888888875 9999999999998766654 242 2333 134789999999999987
Q ss_pred hH
Q 023079 116 PA 117 (287)
Q Consensus 116 ~~ 117 (287)
..
T Consensus 196 ~~ 197 (608)
T PRK06854 196 GI 197 (608)
T ss_pred hc
Confidence 53
No 118
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.71 E-value=0.046 Score=53.44 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~ 116 (287)
...++..|.+.+++.|++++++++|+++..+++++. |... +| +.+++.|+ .||+|+|.++.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g-------------~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDG-------------REVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECC-------------eEEEEEecceEEEecCCccC
Confidence 356788888999999999999999999988776653 4432 23 23578895 69999999887
No 119
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.69 E-value=0.055 Score=52.93 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+++.|+++++++.|+++..+++++. |.. .+| +...+.|+.||+|+|.++.
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTG-------------EIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCC-------------cEEEEECCeEEECCCcccC
Confidence 456788888888888999999999999987766653 432 334 1246899999999999874
No 120
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.68 E-value=0.026 Score=51.91 Aligned_cols=56 Identities=23% Similarity=0.180 Sum_probs=43.5
Q ss_pred HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...+...+...|.+++.+++|++|+.+++++.|.+.+|. +++||+||+|+......
T Consensus 212 ~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~l~ 267 (450)
T PF01593_consen 212 SLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGE---------------TIEADAVISAVPPSVLK 267 (450)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSS---------------EEEESEEEE-S-HHHHH
T ss_pred hHHHHHHHhhcCceeecCCcceeccccccccccccccce---------------EEecceeeecCchhhhh
Confidence 344444555668899999999999999999999999883 79999999999865433
No 121
>PRK14727 putative mercuric reductase; Provisional
Probab=95.62 E-value=0.058 Score=51.69 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.+++.|++++++++|+++..+++.+.|.+.++ ++.+|.||+|+|.+.+.
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g----------------~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG----------------ELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC----------------eEEeCEEEEccCCCCCc
Confidence 4566777788899999999999999987777777777766 79999999999998764
No 122
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.58 E-value=0.061 Score=52.79 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++..|.+.+++.|+++++++.|+++..+++.+. |. +.++ +...+.|+.||+|+|.++..
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADG-------------RLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCEEEECCCCCcCC
Confidence 367888999989999999999999999987766542 32 3344 12368999999999998753
No 123
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.57 E-value=0.056 Score=53.90 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EE--Ee-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NV--YI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V--~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++..|.+.+.+.|+++++++.|+++..+++++ .| .. .+| ....|.|+.||+|||.++.-
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G-------------~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITG-------------ELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCcccCC
Confidence 34567788888999999999999999998776654 23 32 344 23468899999999988753
No 124
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.54 E-value=0.044 Score=53.17 Aligned_cols=64 Identities=23% Similarity=0.177 Sum_probs=45.9
Q ss_pred HHHHHHHH-HCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-CchHHHHHh
Q 023079 48 LSLVGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF 122 (287)
Q Consensus 48 ~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-~s~~l~~~~ 122 (287)
.+++..|. +.|++|++++.|+.|..+++++ .|+..++. +....+.++.||+|||+ ++++|+...
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~-----------~~~~~~~ak~VIlaAGai~SP~LLl~S 263 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGG-----------RKEHTEANKEVILSAGAINSPQLLQLS 263 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCC-----------cEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence 44555555 5579999999999999887654 36553331 01124689999999999 899988766
No 125
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.54 E-value=0.057 Score=52.85 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEec-CCcccccCCCCCCCCCceeEec-CEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYIS-ESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~-~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~~s~~ 117 (287)
...++.+|.+.+++.|++|+++++|+++..+++++ .|... ++ .++.+.| +.||+|+|.++..
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g-------------~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRG-------------REVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECC-------------cEEEEEcCCEEEEecCCcccc
Confidence 35677889888999999999999999998765554 34332 33 1345777 5799999998864
No 126
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=95.53 E-value=0.073 Score=50.50 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=53.2
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVN 109 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~ 109 (287)
+++.|..| ...+.++|.+.++..|++++.+++|.+|..+++ . +.|++.+|+ +++|+.||.
T Consensus 223 p~~yp~gG---~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge---------------~i~a~~VV~ 284 (443)
T PTZ00363 223 PFIYPLYG---LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE---------------VAKCKLVIC 284 (443)
T ss_pred cceeeCCC---HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc---------------EEECCEEEE
Confidence 34555555 357999999999999999999999999987753 3 568888883 799999998
Q ss_pred cCCCCch
Q 023079 110 SAGLSAP 116 (287)
Q Consensus 110 aaG~~s~ 116 (287)
....|..
T Consensus 285 ~~s~~p~ 291 (443)
T PTZ00363 285 DPSYFPD 291 (443)
T ss_pred Ccccccc
Confidence 7776644
No 127
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.53 E-value=0.064 Score=52.53 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++.+|.+.+++.|++|++++.++++..+++.+ .|.. .+| ....|.|+.||+|||.++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g-------------~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETG-------------EIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEEeCeEEECCCCcccc
Confidence 45788999999999999999999999998766654 3432 234 23578999999999998753
No 128
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.51 E-value=0.064 Score=50.72 Aligned_cols=61 Identities=11% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+++ .|++|+++++|+++..+++++ .|. +.++. .+.+.|+.||+|+|.++.
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~-------------~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNK-------------QINIYSKVTILATGGIGG 190 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCc-------------EEEEEcCeEEEccCcccc
Confidence 45788888888875 599999999999997766653 333 33331 236899999999999764
No 129
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.51 E-value=0.064 Score=52.52 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
...++..|.+.+.+.|+++++++.++++..+++.+. |...+..+ +....+.|+.||+|||.+.
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~----------g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKT----------LTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCC----------CeEEEEEeCeEEECCCccc
Confidence 456788898888888999999999999988766653 54432111 1235789999999999887
No 130
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.43 E-value=0.047 Score=52.75 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+..++.+|.+.++ .|+++++++.|+++..+++.+. |.+.+.. ++...+.|+.||+|+|.++.
T Consensus 128 ~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~-----------g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 128 TGKNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSE-----------GKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cHHHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECC-----------CcEEEEEcCeEEEecCCCcc
Confidence 45678888888776 6999999999999977666543 5443320 12346899999999999885
No 131
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.43 E-value=0.077 Score=50.11 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
..+...+.+.++++|++++.+++|+++..+++...|.++++ ++.+|.||+|+|...+ .+++..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~d~vi~a~G~~p~~~~l~~~ 254 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG----------------EYEADVVIVATGVKPNTEFLEDT 254 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC----------------EEEcCEEEECcCCCcCHHHHHhc
Confidence 45667777788899999999999999965444345666655 7999999999998754 455554
No 132
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.42 E-value=0.071 Score=52.08 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+.+..++..+.+.+++.|++++ +++|+++..+++.+.|++.++ .+.+++||+|+|++...
T Consensus 56 ~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g----------------~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 56 NTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG----------------DYKTLAVLIATGASPRK 116 (555)
T ss_pred CCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC----------------EEEEeEEEECCCCccCC
Confidence 34567888888888889999986 678999987766677888777 79999999999997543
No 133
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.41 E-value=0.071 Score=51.84 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecC--CcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079 45 SLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISE--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121 (287)
Q Consensus 45 ~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~ 121 (287)
.+-..|.+.+.+. |++++.+++|++++.+++++.|++.+ | ++.+++||.||-|.|.+|. +-+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G-------------~~~~i~ad~vVgADG~~S~-vR~~ 179 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADG-------------QRETVRARYVVGCDGANSF-VRRT 179 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCC-------------CEEEEEEEEEEecCCCchh-HHHH
Confidence 3445666666664 99999999999999888888877653 3 1347999999999999875 4444
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 180 l 180 (538)
T PRK06183 180 L 180 (538)
T ss_pred c
Confidence 4
No 134
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.41 E-value=0.048 Score=52.75 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+..++.+|.+.+++. |+++++++.|+++..+++.+ .|.+.+.. ....+.|+.||+|+|.++.
T Consensus 134 ~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~------------~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 134 AGAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAG------------GPVVLPARAVVLATGGIGG 198 (513)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCC------------eEEEEECCEEEEcCCCCcC
Confidence 3567889999888875 89999999999987766654 34443220 1236899999999999763
No 135
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.40 E-value=0.077 Score=52.75 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..|.+.+++.|++|++++.|+++..+++++. |...+..+ +....|.|+.||+|||.++.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~----------g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVT----------GEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCC----------CcEEEEECCEEEECCCCccc
Confidence 5566678888999999999999987666543 54432100 11346899999999999875
No 136
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.36 E-value=0.064 Score=52.75 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCE-EEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~~s~ 116 (287)
.++..|.+.+++.|++|+++++|+.+..+ ++++. |..... +.++.|.|++ ||+|||.+..
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~------------~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVERE------------GRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeC------------CcEEEEEeceeEEEecCcccC
Confidence 35556777788899999999999999875 45553 443322 1245799985 9999999985
No 137
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.26 E-value=0.078 Score=51.83 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~ 116 (287)
..+...|.+.+++.|++++++++|+++..+++++. |... ++ ++..|.|+ .||+|+|.+..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g-------------~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESG-------------EPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCC-------------cEEEEEeceeEEEccCCcCc
Confidence 34667777788889999999999999988766653 4433 33 23578997 59999998876
No 138
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.25 E-value=0.083 Score=49.21 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKR 121 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~ 121 (287)
+..+...+.+.++++|++++++++|+++.. ++.+.|++.+|. ++.||.||+|+|...+. +++.
T Consensus 185 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~---------------~i~aD~Vv~a~G~~pn~~l~~~ 248 (396)
T PRK09754 185 PPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGE---------------TLQADVVIYGIGISANDQLARE 248 (396)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCC---------------EEECCEEEECCCCChhhHHHHh
Confidence 344556677778889999999999999876 556677787772 79999999999998754 4443
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 249 ~ 249 (396)
T PRK09754 249 A 249 (396)
T ss_pred c
Confidence 3
No 139
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=95.25 E-value=0.1 Score=48.53 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=47.9
Q ss_pred eecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 40 IVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
++|-..+-..+.+.++++ +++++ ..+|+++..+++.+ .|.|.+|. .+.|+.||+|+|.
T Consensus 91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~---------------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGE---------------EIEADAVVLATGT 150 (392)
T ss_dssp EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSE---------------EEEECEEEE-TTT
T ss_pred hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCC---------------EEecCEEEEeccc
Confidence 799999999999988874 78887 47999999988876 49999883 8999999999999
No 140
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.25 E-value=0.091 Score=49.92 Aligned_cols=59 Identities=14% Similarity=0.129 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...+.+.++++|++++.+++|+++...++++.|++.+|. ++++|.||+|+|...+.
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK---------------KIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC---------------EEEeCEEEEeecCCccc
Confidence 345677788888999999999999999877677777776662 79999999999987653
No 141
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.21 E-value=0.049 Score=50.56 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+..+|++.++++|++|+++++|++|...++++.+.. .+| + .++||.||+|+.++.
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g---~------------~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGG---E------------TLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCC---c------------cccCCEEEEcCCHHH
Confidence 335577788888999999999999999887765432 344 1 789999999987653
No 142
>PRK14694 putative mercuric reductase; Provisional
Probab=95.18 E-value=0.096 Score=49.99 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...+.+.++++|++++.++.|++++.+++.+.+.+.++ ++.+|.||+|+|...+.
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG----------------TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC----------------EEEeCEEEEccCCCCCc
Confidence 35667778888899999999999999987766666777655 79999999999987665
No 143
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.15 E-value=0.086 Score=52.18 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.++++|+++++++.++++.. +++.+. |.. .+| ....|.|+.||+|||.++.
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDG-------------SIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCC-------------eEEEEECCcEEEeCCCCcc
Confidence 457889999999999999999999999887 455542 432 334 2357899999999999864
No 144
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.14 E-value=0.093 Score=51.60 Aligned_cols=62 Identities=23% Similarity=0.224 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC----CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG----NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~----~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
...++..|.+.+++.|+++++++.|+++..++ +++ .|.. .++ ....|.|+.||+|+|.+
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~ 205 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATG-------------EIHVFHAKAVVFATGGS 205 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCC-------------eEEEEEeCeEEECCCCC
Confidence 56788899998999999999999999997654 444 3433 233 12468999999999998
Q ss_pred chH
Q 023079 115 APA 117 (287)
Q Consensus 115 s~~ 117 (287)
+..
T Consensus 206 ~~~ 208 (583)
T PRK08205 206 GRV 208 (583)
T ss_pred ccc
Confidence 743
No 145
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.12 E-value=0.059 Score=45.82 Aligned_cols=71 Identities=28% Similarity=0.352 Sum_probs=49.7
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeEE-EEecCCcccccCCCCCCC---CCceeEecCEEEEcCCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~~ 114 (287)
..|+..++..|+..|.+.|+++++.+.|.++-..+ +++. |.+ ||.-+++. =.+..|+|+.||-|||.-
T Consensus 92 v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvVi-------NWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVI-------NWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEE-------EEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEE-------EehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 46999999999999999999999999999987655 6653 443 13333333 245789999999999987
Q ss_pred chH
Q 023079 115 APA 117 (287)
Q Consensus 115 s~~ 117 (287)
+.-
T Consensus 165 a~v 167 (230)
T PF01946_consen 165 AEV 167 (230)
T ss_dssp SSS
T ss_pred hHH
Confidence 754
No 146
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.02 E-value=0.093 Score=50.23 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...+.+..+++|++|+.+++|++|..++ ++ + .|++.+|.+++ .+.||+||+|+.+|...
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~------------~~~aD~VVlA~p~~~~~ 286 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK------------VIKADAYVAACDVPGIK 286 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce------------EEECCEEEECCChHHHH
Confidence 3456778888889999999999999998754 22 2 34454442112 58999999999987443
No 147
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=95.01 E-value=0.15 Score=43.43 Aligned_cols=73 Identities=26% Similarity=0.345 Sum_probs=55.8
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE-EEecCCcccccCCCCCCCC---CceeEecCEEEEcCCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQ---PELTLIPKLVVNSAGLS 114 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~---~~~~i~a~~VV~aaG~~ 114 (287)
..|+..++..|+..|.+.|+++++.+.|.++-..++ ++. |.+ ||--+.+++ .+..++|+.||-|||.-
T Consensus 105 v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVv-------NWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 105 VADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVV-------NWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred EecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEE-------ecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 568999999999999999999999999999876655 442 333 233333333 35689999999999998
Q ss_pred chHHH
Q 023079 115 APALA 119 (287)
Q Consensus 115 s~~l~ 119 (287)
+.-..
T Consensus 178 a~v~~ 182 (262)
T COG1635 178 AEVVS 182 (262)
T ss_pred hHHHH
Confidence 77653
No 148
>PRK06116 glutathione reductase; Validated
Probab=94.96 E-value=0.11 Score=49.22 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.+++|.+++.++++ +.|++.+|. ++.+|.||+|+|....
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE---------------TLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc---------------EEEeCEEEEeeCCCcC
Confidence 45667777888999999999999999876544 677777762 7999999999997543
No 149
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.94 E-value=0.11 Score=50.88 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+.+.|+++++++.++++..+ ++++ .|.. .+| +...|.|+.||+|||.++.
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETG-------------ETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCC-------------cEEEEecCeEEECCCCccc
Confidence 4678899999899899999999999999875 4554 3443 334 2457899999999999885
No 150
>PLN02676 polyamine oxidase
Probab=94.94 E-value=0.071 Score=51.25 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHC------CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 44 HSLMLSLVGEAENH------GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 44 ~~l~~~l~~~a~~~------Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++..|++....+ +.+|+.+++|++|..+++++.|+|.+|. +++||+||+|.....
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~---------------~~~a~~VIvtvPl~v 286 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGS---------------VYRAKYVIVSVSLGV 286 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCC---------------EEEeCEEEEccChHH
Confidence 45566666554332 3679999999999998889999999883 799999999998643
No 151
>PRK06475 salicylate hydroxylase; Provisional
Probab=94.93 E-value=0.14 Score=47.74 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=49.9
Q ss_pred ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
++-..+...|.+.+.+. |++++++++|+++..+++++.|+..++.++ .+++||.||-|-|.+|.-
T Consensus 104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~------------~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV------------ETVSAAYLIACDGVWSML 169 (400)
T ss_pred ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCC------------cEEecCEEEECCCccHhH
Confidence 45567888888887664 899999999999988777887765322111 279999999999999854
No 152
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.92 E-value=0.079 Score=50.35 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
..++.+|++.+.+ ++|+++++|++|+..+++|.|++.+|. .++||.||+|+-+
T Consensus 226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~a~p~ 278 (463)
T PRK12416 226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHE---------------SIQADYVVLAAPH 278 (463)
T ss_pred HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEECCCH
Confidence 4566777665543 689999999999998888999887772 6899999999853
No 153
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.92 E-value=0.11 Score=51.12 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++..|.+.+++.|++|++++.|+++..++ +++ .|.. .+| ..+.|.|+.||+|||.+...
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDG-------------TLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCC-------------cEEEEEcCEEEECCCCCccc
Confidence 34688889998999999999999999998765 444 3432 344 23578999999999998764
No 154
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.91 E-value=0.11 Score=50.72 Aligned_cols=65 Identities=11% Similarity=0.067 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
....++.+|.+.+++.|+++++++.|+++..++ +.+ .|... .+.. +....+.|+.||+|+|.++.
T Consensus 142 ~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~----------~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 142 TGAEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSP----------DGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCC----------CcEEEEEcCeEEECCCCCCC
Confidence 346788899999989999999999999998764 343 24332 1100 00237899999999999874
No 155
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.91 E-value=0.089 Score=37.13 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCC
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES 84 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g 84 (287)
+..+...+.+.+++.|+++++++.+.++...+++++|++++|
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 345666677888999999999999999999887777888876
No 156
>PRK05868 hypothetical protein; Validated
Probab=94.91 E-value=0.12 Score=47.85 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.|...|. .+...|++++++++|++++.+++++.|+.++|. +++||.||-|-|.+|.-
T Consensus 106 ~L~~~l~-~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~---------------~~~adlvIgADG~~S~v 162 (372)
T PRK05868 106 DLVELLY-GATQPSVEYLFDDSISTLQDDGDSVRVTFERAA---------------AREFDLVIGADGLHSNV 162 (372)
T ss_pred HHHHHHH-HhccCCcEEEeCCEEEEEEecCCeEEEEECCCC---------------eEEeCEEEECCCCCchH
Confidence 3444333 344568999999999999887788889888873 79999999999999844
No 157
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.88 E-value=0.088 Score=49.86 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+..++.+|.+.++++|++|+++++|++|...+++ + .|++.++.+ +..+++.||.||.|+.+.
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~----------~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEG----------QRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCC----------CceeEEECCEEEEcCCHH
Confidence 5778999999999999999999999999865443 4 466655411 011258999999999874
No 158
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.88 E-value=0.051 Score=50.80 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=58.7
Q ss_pred cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEE
Q 023079 29 CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLV 107 (287)
Q Consensus 29 ~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~V 107 (287)
..+++..|.+|. ..+..++++.++++|++|++...|.+|..++++. .|+..+|+ +++++.|
T Consensus 252 ~~g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~---------------ev~sk~V 313 (561)
T KOG4254|consen 252 HKGGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT---------------EVRSKIV 313 (561)
T ss_pred cCCcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc---------------EEEeeee
Confidence 346666777765 5778899999999999999999999999887764 59999995 7999888
Q ss_pred EEcCCCCchH
Q 023079 108 VNSAGLSAPA 117 (287)
Q Consensus 108 V~aaG~~s~~ 117 (287)
|=-|+.|-.-
T Consensus 314 vSNAt~~~Tf 323 (561)
T KOG4254|consen 314 VSNATPWDTF 323 (561)
T ss_pred ecCCchHHHH
Confidence 8888888654
No 159
>PRK08275 putative oxidoreductase; Provisional
Probab=94.86 E-value=0.14 Score=50.08 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++..|.+.+++.|+++++++.|+++..+ ++.+ .|.. .+| +...+.|+.||+|+|..+.
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTG-------------EFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCC-------------cEEEEECCEEEECCCCccc
Confidence 467888988899999999999999999876 4544 3432 344 1346899999999999764
No 160
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.80 E-value=0.11 Score=50.57 Aligned_cols=93 Identities=19% Similarity=0.228 Sum_probs=61.1
Q ss_pred eeeCHHHHHhhC-------CCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe--C--CeE-EEE
Q 023079 13 RMLEGFEAMKME-------PELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE--G--NCM-NVY 80 (287)
Q Consensus 13 ~~L~~~ei~~~~-------P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~--~--~~~-~V~ 80 (287)
.+.|+.|+++.+ +.+....++-...-- ....++.-|.+.++++||+|+++++|+++..+ + +.+ .|.
T Consensus 190 ~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~yn--qyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~ 267 (576)
T PRK13977 190 KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYN--QYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIH 267 (576)
T ss_pred hhhHHHHHHHHHHHHHHhhccCCccccccCCCCC--chhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEE
Confidence 456777776654 444344444322221 23688899999999999999999999999875 3 223 244
Q ss_pred ec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 81 IS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 81 t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.. +|.. .......+|.||+|+|..+..
T Consensus 268 ~~~~~~~----------~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 268 LTRNGKE----------ETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred EEeCCce----------eEEEecCCCEEEEeCCcCccc
Confidence 43 2311 112346899999999988766
No 161
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.76 E-value=0.14 Score=47.45 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~ 120 (287)
-..+...|++.+.+.|++++++++|++++. +++...|+. .+|. +.+++||.||-|-|.+|. +-+
T Consensus 102 ~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~-------------~~~i~ad~vVgADG~~S~-vR~ 167 (392)
T PRK08243 102 QTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGE-------------EHRLDCDFIAGCDGFHGV-SRA 167 (392)
T ss_pred cHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCe-------------EEEEEeCEEEECCCCCCc-hhh
Confidence 356677888888888999999999999976 455566665 3451 247999999999999874 444
Q ss_pred Hh
Q 023079 121 RF 122 (287)
Q Consensus 121 ~~ 122 (287)
.+
T Consensus 168 ~~ 169 (392)
T PRK08243 168 SI 169 (392)
T ss_pred hc
Confidence 44
No 162
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=94.69 E-value=0.17 Score=47.78 Aligned_cols=67 Identities=18% Similarity=0.312 Sum_probs=52.3
Q ss_pred eecHHHHHHHHHHHHHHCC---cEEEcCceeEEEEEe-------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079 40 IVDSHSLMLSLVGEAENHG---TTFSNNTSVIGGHLE-------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVN 109 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~G---v~~~~~~~V~~i~~~-------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~ 109 (287)
.++-..+...|.+.+.+.+ ++++++++|++++.+ ++.+.|++.+|. +++||.||-
T Consensus 113 ~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~---------------~i~a~llVg 177 (437)
T TIGR01989 113 IIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQ---------------VLYTKLLIG 177 (437)
T ss_pred EEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCC---------------EEEeeEEEE
Confidence 4566677788888888765 899999999999752 356788888773 899999999
Q ss_pred cCCCCchHHHHHh
Q 023079 110 SAGLSAPALAKRF 122 (287)
Q Consensus 110 aaG~~s~~l~~~~ 122 (287)
|-|.+|.- -+.+
T Consensus 178 ADG~~S~v-R~~~ 189 (437)
T TIGR01989 178 ADGSNSNV-RKAA 189 (437)
T ss_pred ecCCCChh-HHHc
Confidence 99998753 3444
No 163
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.64 E-value=0.15 Score=49.35 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEec-CCcccccCCCCCCCCCceeEecC-EEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYIS-ESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~-~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~~s~ 116 (287)
..++..|.+.+.+. |++++++++|+++..+++.+. |... ++ .+..+.|+ .||+|||.+..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g-------------~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGG-------------ERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECC-------------cEEEEEeCceEEEeCCCccC
Confidence 45777788777664 999999999999987766553 4332 23 23579996 69999999853
No 164
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.61 E-value=0.15 Score=50.59 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++.+|.+.+.+.|++|+.++.++++..+ ++.+ .|.. .+| +...+.|+.||+|||.+...
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~g~~ 252 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDG-------------TLHRFRAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCC-------------eEEEEEcCeEEECCCCCccc
Confidence 4568889998898899999999999998765 4544 3443 234 23578999999999998754
No 165
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.57 E-value=0.082 Score=48.48 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=47.0
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.|.+++..+...+.+.+++.|++|+. .+|++++.+++ .|.+++|. +++.|++|+|+|+-..
T Consensus 48 ~g~~~~~~~~~~~~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 48 AGHYSLDEIRIDLRRLARQAGARFVI-AEATGIDPDRR--KVLLANRP---------------PLSYDVLSLDVGSTTP 108 (364)
T ss_pred heeCCHHHhcccHHHHHHhcCCEEEE-EEEEEEecccC--EEEECCCC---------------cccccEEEEccCCCCC
Confidence 45667777777777777888999986 48999987665 46677772 6999999999997543
No 166
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=94.55 E-value=0.14 Score=48.45 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+...+.+.++++|++++.++.|+++...++++.|++.++. ++.+|.||+|+|...+
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE---------------EIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc---------------EeecCEEEEeeCCCcC
Confidence 345566777788899999999999999876666777776662 7999999999997544
No 167
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.52 E-value=0.15 Score=48.44 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.+++|++++.+++.+.|++.++. .+.++.+|.||+|+|....
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg------------~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGG------------KEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCC------------eeEEEEeCEEEEeeCCccC
Confidence 55666777788899999999999999877677777665441 1237999999999998654
No 168
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.51 E-value=0.17 Score=48.03 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.+++|.+++.+++++.|++.+|. ..++.+|.||+|+|...+
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~-------------~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGE-------------TETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCc-------------EEEEEeCEEEEecCCccc
Confidence 45566777788899999999999999887777777766551 127999999999997654
No 169
>PRK06753 hypothetical protein; Provisional
Probab=94.50 E-value=0.14 Score=47.00 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
..+...|.+.+. +.+++++++|++++.+++++.|++++|. ++++|.||-|-|.+|. +.+.+
T Consensus 98 ~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~~~vigadG~~S~-vR~~~ 158 (373)
T PRK06753 98 QTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGE---------------SEAFDLCIGADGIHSK-VRQSV 158 (373)
T ss_pred HHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCC---------------EEecCEEEECCCcchH-HHHHh
Confidence 444555544433 4689999999999988888999888773 7899999999999874 33444
No 170
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.46 E-value=0.16 Score=49.46 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-E-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+++.|+++++++.|+++..++++ + .|.. .+| ..+.|.|+.||+|||.++.
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNG-------------EIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCC-------------cEEEEEcCcEEECCCCCCC
Confidence 3567888888888899999999999999876553 4 3432 334 1347999999999999864
No 171
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.43 E-value=0.18 Score=49.70 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
...++..|.+.+.+.|+++++++.++++..+ ++++ .|.. .+| ....+.|+.||+|||.++..
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETG-------------EVVYFKARATVLATGGAGRI 208 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCCcccc
Confidence 4578889988888899999999999999874 4554 3443 233 23578999999999998753
No 172
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.34 E-value=0.13 Score=48.51 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.++.+|++.+... +|+++++|++|..++++|.|++.+|. +++||+||+|+.+.
T Consensus 222 ~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~vI~a~p~~ 274 (451)
T PRK11883 222 SLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGG---------------EIEADAVIVAVPHP 274 (451)
T ss_pred HHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECCCHH
Confidence 4555555444332 89999999999988888988887773 79999999998863
No 173
>PRK13748 putative mercuric reductase; Provisional
Probab=94.33 E-value=0.2 Score=48.87 Aligned_cols=57 Identities=7% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.+++.|++++++++|++++.+++.+.+.++++ ++.+|.||+|+|...+.
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG----------------ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC----------------eEEeCEEEEccCCCcCC
Confidence 4566777788899999999999999987766777777666 79999999999987554
No 174
>PLN02268 probable polyamine oxidase
Probab=94.31 E-value=0.12 Score=48.55 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=37.8
Q ss_pred CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+++++.+++|++|...+++|.|++.+|+ +++||+||+|+-+..
T Consensus 209 ~~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VIva~P~~~ 252 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYNGVKVTVEDGT---------------TFVADAAIIAVPLGV 252 (435)
T ss_pred ccCceeCCCeeEEEEEcCCcEEEEECCCc---------------EEEcCEEEEecCHHH
Confidence 46789999999999998888999988773 699999999986654
No 175
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=94.29 E-value=0.18 Score=48.98 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=48.6
Q ss_pred eecHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeC-----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079 40 IVDSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEG-----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG 112 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~-----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 112 (287)
...-..+..-|...|+..+. .|+++|+|+++++.+ ++|.|++.++. ++.+-.+|.||+|+|
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g------------~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDG------------KEETEEFDAVVVATG 147 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTT------------EEEEEEECEEEEEE-
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCC------------eEEEEEeCeEEEcCC
Confidence 44556777777778888776 589999999998864 36999886541 123557899999999
Q ss_pred CCchH
Q 023079 113 LSAPA 117 (287)
Q Consensus 113 ~~s~~ 117 (287)
.++..
T Consensus 148 ~~~~P 152 (531)
T PF00743_consen 148 HFSKP 152 (531)
T ss_dssp SSSCE
T ss_pred CcCCC
Confidence 98754
No 176
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=94.27 E-value=0.11 Score=46.23 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=48.2
Q ss_pred EcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEE
Q 023079 34 LSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVN 109 (287)
Q Consensus 34 ~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~ 109 (287)
.++.+..-++. .+++..|.++ ++++++++.|+.|..+ ++++ .|+..+..+. .+...+.++.||+
T Consensus 185 ~~~~g~r~s~~---~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~---------~~~~~~~ak~VIl 252 (296)
T PF00732_consen 185 NCPNGARSSAA---TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG---------VQRRIVAAKEVIL 252 (296)
T ss_dssp CECTTCBBHHH---HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS---------EEEEEEEEEEEEE
T ss_pred cccchhceehh---hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc---------ceeeeccceeEEe
Confidence 35555554442 3444455555 9999999999999665 4443 3544332110 1234688999999
Q ss_pred cCCC-CchHHHHHh
Q 023079 110 SAGL-SAPALAKRF 122 (287)
Q Consensus 110 aaG~-~s~~l~~~~ 122 (287)
|||+ .+++|+...
T Consensus 253 aAGai~Tp~LLl~S 266 (296)
T PF00732_consen 253 AAGAIGTPRLLLRS 266 (296)
T ss_dssp -SHHHHHHHHHHHT
T ss_pred ccCCCCChhhhccc
Confidence 9997 666777666
No 177
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.074 Score=45.38 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..|+..|.+++.+.|.++++. .|.+++.++.-+.|.|+.+ .++||.||+|+|+-+.+|
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~----------------~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR----------------PVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC----------------ceeeeeEEEecccceeee
Confidence 478888999999999999864 6778888888889989877 899999999999988776
No 178
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.17 E-value=0.13 Score=47.91 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~ 121 (287)
.|.++.....+.++++||++.+++.|++++.++ |++.+|. .+|.++.||=|||.-++.+.+.
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~--------------~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGE--------------EEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCC--------------eeEecCEEEEcCCCcCChhhhh
Confidence 456777777778899999999999999997643 6666662 1599999999999999999987
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 269 l 269 (405)
T COG1252 269 L 269 (405)
T ss_pred c
Confidence 4
No 179
>PRK10262 thioredoxin reductase; Provisional
Probab=94.17 E-value=0.27 Score=44.26 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=45.9
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++...+...+.+.+...+.++..+ +|.+++..++.|.++++.+ .+++|+||+|+|.+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~----------------~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 60 LTGPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG----------------EYTCDALIIATGASAR 118 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC----------------EEEECEEEECCCCCCC
Confidence 555666777777788888887764 6778888777888877655 7999999999999753
No 180
>PLN02507 glutathione reductase
Probab=94.14 E-value=0.24 Score=47.77 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.++++|++++.++.|++++.+++++.|.+.+|. ++.+|.|++|+|.-.+.
T Consensus 245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 245 EMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE---------------EFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc---------------EEEcCEEEEeecCCCCC
Confidence 45566667788899999999999999877677777776662 79999999999976543
No 181
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.02 E-value=0.17 Score=47.96 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.++.+|++.+. .++++.+++|+.|...+++|.|++++|. +++||+||+|+.+.
T Consensus 226 ~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 226 TLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNYTLELDNGV---------------TVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHHhc--cCeEEcCCeEEEEEecCCcEEEEECCCc---------------EEEcCEEEECCCHH
Confidence 34444444332 2789999999999998888999887772 79999999998864
No 182
>PRK07538 hypothetical protein; Provisional
Probab=93.97 E-value=0.27 Score=45.97 Aligned_cols=66 Identities=11% Similarity=0.294 Sum_probs=48.4
Q ss_pred ecHHHHHHHHHHHHHH-CCc-EEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 41 VDSHSLMLSLVGEAEN-HGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~-~Gv-~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++-..+...|.+.+.+ .|. +++.+++|+++..+++++.+.+.++.. +...+++||.||-|-|.+|.
T Consensus 99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~----------g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAG----------GDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCC----------CccceEEeeEEEECCCCCHH
Confidence 5666777888887765 474 699999999998776666555544321 12347999999999999875
No 183
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.95 E-value=0.27 Score=46.45 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.+++|+++..+++.+.+.+++. ++.+|.||+|+|....
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~----------------~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE----------------TYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe----------------EEEcCEEEEeeCCCCC
Confidence 4445556667889999999999999987666666655433 7999999999998654
No 184
>PRK07236 hypothetical protein; Provisional
Probab=93.89 E-value=0.26 Score=45.66 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...|.+.+ .+++++.+++|++++.+++++.|+.++|. +++||.||.|-|.+|.-
T Consensus 100 ~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 100 NVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGR---------------RETADLLVGADGGRSTV 156 (386)
T ss_pred HHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCchH
Confidence 34444444322 35689999999999988888888888873 79999999999999864
No 185
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.78 E-value=0.28 Score=48.67 Aligned_cols=61 Identities=11% Similarity=0.070 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHC--------C-----cEEEcCceeEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecC
Q 023079 43 SHSLMLSLVGEAENH--------G-----TTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPK 105 (287)
Q Consensus 43 p~~l~~~l~~~a~~~--------G-----v~~~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~ 105 (287)
...++.+|.+.++++ | +++++++.|+++..+++.+. |.. .++ ....+.|+
T Consensus 137 G~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak 203 (626)
T PRK07803 137 GLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESG-------------RFVLFEAP 203 (626)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCC-------------eEEEEEcC
Confidence 356788888888776 7 99999999999987666542 332 233 23468999
Q ss_pred EEEEcCCCCch
Q 023079 106 LVVNSAGLSAP 116 (287)
Q Consensus 106 ~VV~aaG~~s~ 116 (287)
.||+|+|.+..
T Consensus 204 ~VVlATGG~~~ 214 (626)
T PRK07803 204 AVVLATGGIGK 214 (626)
T ss_pred eEEECCCcccC
Confidence 99999998653
No 186
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.69 E-value=0.31 Score=48.03 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++..|.+.+.+.|++++.++.++++..+ ++.+ .|.. .+| ....+.|+.||+|+|.++.
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETG-------------DVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCC-------------eEEEEECCeEEECCCCccc
Confidence 568888988888899999999999998865 3444 3443 233 1346899999999999875
No 187
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.69 E-value=0.3 Score=48.09 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-E---EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-V---YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V---~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++.+|.+.+.+. |+++++++.|+++..+++.+. | .+.+| ....+.|+.||+|+|.++.
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEECCEEEECCCCCcC
Confidence 346778888777765 899999999999987766553 3 23344 1347999999999999874
No 188
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.56 E-value=0.35 Score=46.15 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.++++|++++++++|++++.+++++.|.+.+|. ++.+|.||+|+|.-.+.
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR---------------TVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc---------------EEEecEEEEeecCCcCC
Confidence 44566667778899999999999999876677777776662 79999999999976554
No 189
>PRK07208 hypothetical protein; Provisional
Probab=93.48 E-value=0.25 Score=47.13 Aligned_cols=67 Identities=24% Similarity=0.277 Sum_probs=49.5
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE--EEec--CCcccccCCCCCCCCCceeEecCEE
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN--VYIS--ESKNLRNWDGVSPLQPELTLIPKLV 107 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~--V~t~--~g~~~~~~~~~~~~~~~~~i~a~~V 107 (287)
.+..|.+|. ..++.+|++.+.+.|++++.+++|++|..+++++. +... +| ...+++||+|
T Consensus 209 ~~~~p~gG~---~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g-------------~~~~~~ad~V 272 (479)
T PRK07208 209 EFRYPKLGP---GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDG-------------TEETVTADQV 272 (479)
T ss_pred EEeCCCCCc---chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCC-------------CEEEEEcCEE
Confidence 345566653 47888999989999999999999999998876642 3322 23 1236899999
Q ss_pred EEcCCCC
Q 023079 108 VNSAGLS 114 (287)
Q Consensus 108 V~aaG~~ 114 (287)
|.|+.++
T Consensus 273 I~a~p~~ 279 (479)
T PRK07208 273 ISSMPLR 279 (479)
T ss_pred EECCCHH
Confidence 9998875
No 190
>PLN02985 squalene monooxygenase
Probab=93.39 E-value=0.45 Score=46.09 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.6
Q ss_pred eeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 39 GIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
..++-.++...|.+.+.+. |++++.+ .|+++..+++.+ .|+ +.+|. +.+++||.||.|.|.+
T Consensus 142 ~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~-------------~~~~~AdLVVgADG~~ 207 (514)
T PLN02985 142 RSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGE-------------ETTALAPLTVVCDGCY 207 (514)
T ss_pred eeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCC-------------EEEEECCEEEECCCCc
Confidence 3566678889999888776 7898865 577776655543 343 34451 3467899999999998
Q ss_pred chHHHHHh
Q 023079 115 APALAKRF 122 (287)
Q Consensus 115 s~~l~~~~ 122 (287)
|. +-+.+
T Consensus 208 S~-vR~~l 214 (514)
T PLN02985 208 SN-LRRSL 214 (514)
T ss_pred hH-HHHHh
Confidence 85 43444
No 191
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.37 E-value=0.34 Score=47.58 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++..|.+.+.+ .|+++++++.|+++..+++.+ .|. +.++ +...+.|+.||+|+|.++.
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRG-------------EFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCcEEEcCchhcc
Confidence 4577888888776 699999999999998766654 232 2334 1246899999999999853
No 192
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=93.33 E-value=0.34 Score=48.25 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=47.3
Q ss_pred ecHHHHHHHHHHHHHHCCc-EEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHH
Q 023079 41 VDSHSLMLSLVGEAENHGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA 119 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv-~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~ 119 (287)
+.=..|...|.+ ..+. .++++++|++++..++++.|++.+|. ++++|.||.|.|+||.--.
T Consensus 191 I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~---------------ti~aDlVVGADG~~S~vR~ 252 (668)
T PLN02927 191 ISRMTLQQILAR---AVGEDVIRNESNVVDFEDSGDKVTVVLENGQ---------------RYEGDLLVGADGIWSKVRN 252 (668)
T ss_pred EeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeCCEEEEEECCCC---------------EEEcCEEEECCCCCcHHHH
Confidence 333445555533 2344 46788899999988889999888873 7999999999999997765
Q ss_pred HHh
Q 023079 120 KRF 122 (287)
Q Consensus 120 ~~~ 122 (287)
.++
T Consensus 253 ~l~ 255 (668)
T PLN02927 253 NLF 255 (668)
T ss_pred Hhc
Confidence 555
No 193
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.27 E-value=0.4 Score=47.35 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHH----CCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAEN----HGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~----~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.+++ .|++++++++|+++..++ +++ .|...+..+ +....+.|+.||+|||.++.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~----------g~~~~i~AkaVVLATGG~g~ 197 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVT----------GEIETHSADAVILATGGYGN 197 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCC----------CcEEEEEcCEEEECCCCCcC
Confidence 34556666555543 489999999999997653 344 354432100 11346899999999999753
No 194
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.16 E-value=0.47 Score=45.19 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.+++|+++..+++.+.|++. +|. ..++.+|.||+|+|.-.+
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~-------------~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK-------------AQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC-------------eEEEEeCEEEECcCcccC
Confidence 45677778888999999999999999876666655443 441 236999999999997544
No 195
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.07 E-value=0.44 Score=45.30 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+...+.+.++++|++++++++|++++.+++.+.+.+. |. ..++.+|.||+|+|...+
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~-g~-------------~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYE-GS-------------IQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC-Cc-------------eEEEEeCEEEEecCCccC
Confidence 356677777888899999999999999876555555543 31 126999999999997644
No 196
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.91 E-value=0.46 Score=45.42 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+...+.+.++++|++++.+++|++++.+++++.|...++. +.+.++.+|.||+|+|.-.+
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~-----------g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDAD-----------GEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCC-----------CceeEEEcCEEEEccCCccC
Confidence 455667777788899999999999999877666666544321 11237999999999997654
No 197
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.89 E-value=0.52 Score=46.38 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++.+|.+.+.+. |+++++++.++++..+++++. |. ..+| ....+.|+.||+|+|.++.
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEG-------------RLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEecCEEEEcCCCCcc
Confidence 467888888887764 899999999999987766553 33 2344 1347999999999999875
No 198
>PLN02568 polyamine oxidase
Probab=92.78 E-value=0.36 Score=47.07 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++.+|++.+. +.+|+.+++|+.|...++++.|++.+|. +++||+||+|.-+..
T Consensus 243 ~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~---------------~~~aD~VIvTvPl~v 296 (539)
T PLN02568 243 SVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGS---------------TMTADHVIVTVSLGV 296 (539)
T ss_pred HHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCC---------------EEEcCEEEEcCCHHH
Confidence 46666665442 4468999999999998889999998873 799999999988543
No 199
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.76 E-value=0.5 Score=44.97 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.+++.|++++.+++|+.+..+++.+.|++....+ ..++.+|.||+|+|.-..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~------------~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGG------------QGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCC------------ceEEEeCEEEEeECCCcC
Confidence 345666677788999999999999998766655555432100 127999999999996443
No 200
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=92.73 E-value=0.41 Score=44.10 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=49.1
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
.+| ..+..++.+.+++.|..|+.+++|++.+..++ .+.|+..+-.++| +.+++||.+.+|.|-
T Consensus 249 ~mD-~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k----------~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 249 VMD-GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGK----------KETLECDVLLVSIGR 312 (506)
T ss_pred ccC-HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCc----------eeEEEeeEEEEEccC
Confidence 345 45677788888999999999999999999877 5666555443323 568999999999994
No 201
>PLN02661 Putative thiazole synthesis
Probab=92.73 E-value=0.69 Score=42.45 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCeE-EEEec------CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYIS------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~-~V~t~------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
+...++..|.+.+.+ .|+++++++.|+++..+++++ .|.+. ++.+ ....++..|+|+.||+|||.
T Consensus 170 ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~-------~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 170 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDT-------QSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred chHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCC-------CCccceeEEECCEEEEcCCC
Confidence 556777888887765 689999999999998877654 34431 1100 00012357999999999997
Q ss_pred Cch
Q 023079 114 SAP 116 (287)
Q Consensus 114 ~s~ 116 (287)
-.+
T Consensus 243 ~g~ 245 (357)
T PLN02661 243 DGP 245 (357)
T ss_pred CCc
Confidence 654
No 202
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.66 E-value=0.35 Score=44.69 Aligned_cols=58 Identities=19% Similarity=-0.005 Sum_probs=41.8
Q ss_pred eecHHHHHHH-HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 40 IVDSHSLMLS-LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 40 ~vdp~~l~~~-l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
...+..+... ....++++|++++.+++|+++..++. .|.++++ ++.+|+||+|+|+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~--~v~~~~~----------------~~~yd~LVlATG~~~ 111 (377)
T PRK04965 53 GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN----------------QWQYDKLVLATGASA 111 (377)
T ss_pred CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCC--EEEECCe----------------EEeCCEEEECCCCCC
Confidence 3455555542 33446778999999999999987654 4555433 799999999999853
No 203
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.65 E-value=0.32 Score=45.93 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEe--cCEEEEcCCCCc
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLI--PKLVVNSAGLSA 115 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~~s 115 (287)
+..++....+.+++.|++++.+++|+++..+++.+.++... + + .++ +|++|+|+|...
T Consensus 55 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~---~------------~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 55 PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTG---S------------IFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCC---C------------EEEecCCEEEECCCCCC
Confidence 44444444556777899999899999998877777766432 3 1 455 999999999853
No 204
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.63 E-value=0.56 Score=46.45 Aligned_cols=61 Identities=15% Similarity=0.044 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC---CeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG---NCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~---~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+.+.+.+.+.+.+.++++++++.|+++..++ +++ .|.. .+| ..+.+.|+.||+|||.|+.
T Consensus 126 ~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 126 ESYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRAN-------------EVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred hhHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCC-------------cEEEEECCEEEECCCcccc
Confidence 3455555556667778999999999998754 343 3432 233 2457899999999999975
Q ss_pred H
Q 023079 117 A 117 (287)
Q Consensus 117 ~ 117 (287)
.
T Consensus 193 l 193 (614)
T TIGR02061 193 V 193 (614)
T ss_pred c
Confidence 3
No 205
>PRK06370 mercuric reductase; Validated
Probab=92.62 E-value=0.55 Score=44.67 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++++++|.+++..++...|.. .++ ..++.+|.||+|+|.-.+
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~--------------~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGG--------------APEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCC--------------ceEEEeCEEEECcCCCcC
Confidence 4556677778889999999999999987666554443 222 127999999999996544
No 206
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.61 E-value=0.47 Score=43.46 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
.+...+.+.++++|++++.+++|.++.. + .|.+.+|. ++.+|.||+|+|...+..+...
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~ 250 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGR---------------TLPADAILWATGARAPPWLAES 250 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCC---------------EEecCEEEEccCCChhhHHHHc
Confidence 3556667778899999999999988853 3 46666662 7999999999998877655544
No 207
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.36 E-value=0.52 Score=45.29 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+...+.+.++++|+++++++.|+++...+++ ..|++.++. ++++|.||+|+|.-.+.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK---------------TLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC---------------EEEcCEEEEeeCCCcCc
Confidence 455677778888999999999999999875443 556665552 79999999999965443
No 208
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=92.29 E-value=0.52 Score=45.26 Aligned_cols=60 Identities=18% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++|++++.++.+...++...|+..++.. ..++.+|.||+|+|.-.+
T Consensus 221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~------------~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 221 DCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN------------GIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc------------ceEEEeCEEEEEecCCcC
Confidence 455666777888999999999998888766665565544411 126999999999997543
No 209
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.29 E-value=0.04 Score=52.04 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred eeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 39 GIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++|..+-..|.+.+.+.|++++.++.|.++..+++++. |++. +| ..+|+|+.||-|+|-
T Consensus 85 ~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g--------------~~~i~A~~~IDaTG~-- 148 (428)
T PF12831_consen 85 VPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSG--------------RKEIRAKVFIDATGD-- 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc--------------ccccccccccccccc--
Confidence 3578888888888888888999999999999999886653 5543 34 238999999999994
Q ss_pred hHHHHHh
Q 023079 116 PALAKRF 122 (287)
Q Consensus 116 ~~l~~~~ 122 (287)
..|+...
T Consensus 149 g~l~~~a 155 (428)
T PF12831_consen 149 GDLAALA 155 (428)
T ss_dssp -------
T ss_pred ccccccc
Confidence 4665555
No 210
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.24 E-value=0.59 Score=45.61 Aligned_cols=72 Identities=11% Similarity=0.019 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHH---HC-CcEEEcCceeEEEEEeCCeE-EEEec---CC-c-ccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 44 HSLMLSLVGEAE---NH-GTTFSNNTSVIGGHLEGNCM-NVYIS---ES-K-NLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 44 ~~l~~~l~~~a~---~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~---~g-~-~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
..++..|.+.++ +. |++|+++++++++..+++++ .|... .+ . .+|+ .....+..+.|.|+.||+|||.
T Consensus 148 ~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~--~~~~~~~~~~i~AkaVILATGG 225 (549)
T PRK12834 148 PGVVEPFERRVREAAARGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEA--SSREVVGEFELRAQAVIVTSGG 225 (549)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCCEEEEEEEEeccccccccccc--ccccccceEEEecCEEEEeCCC
Confidence 356677765554 23 69999999999998776655 35431 10 0 0000 0000012357899999999999
Q ss_pred CchH
Q 023079 114 SAPA 117 (287)
Q Consensus 114 ~s~~ 117 (287)
++..
T Consensus 226 f~~n 229 (549)
T PRK12834 226 IGGN 229 (549)
T ss_pred cccC
Confidence 8854
No 211
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.22 E-value=0.56 Score=44.57 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.++++|++++.++.|+++..++++ ..|++++|. ..+.+|.||+|+|.-.+.
T Consensus 208 ~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~--------------~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 208 MISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK--------------SIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc--------------EEEEcCEEEEeeCCCcCc
Confidence 45566777888899999999999999875443 566666551 269999999999976554
No 212
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.22 E-value=0.59 Score=45.48 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC------CeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079 44 HSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG------NCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAG 112 (287)
Q Consensus 44 ~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~------~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 112 (287)
..+...|.+.++++ |+++++++.|+++..++ +++ .|... ++ ....+.|+.||+|+|
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlATG 204 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKE-------------RVETIRAKFVVLATG 204 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCC-------------cEEEEecCeEEECCC
Confidence 56778888877765 89999999999987643 444 34432 23 234799999999999
Q ss_pred CCch
Q 023079 113 LSAP 116 (287)
Q Consensus 113 ~~s~ 116 (287)
.++.
T Consensus 205 G~~~ 208 (536)
T PRK09077 205 GASK 208 (536)
T ss_pred CCCC
Confidence 9874
No 213
>PRK07395 L-aspartate oxidase; Provisional
Probab=92.20 E-value=0.38 Score=46.99 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC--CeE-EEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG--NCM-NVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~--~~~-~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...++..|.+.++++ |+++++++.|+++..++ +.+ .|... +| ....+.|+.||+|||.++.
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g-------------~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQG-------------QITWLRAGAVILATGGGGQ 198 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECC-------------eEEEEEcCEEEEcCCCCcc
Confidence 356788888888754 99999999999997753 443 34332 33 1235899999999999643
No 214
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.08 E-value=0.25 Score=50.33 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=44.6
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++..+.....+..+++|++++.+++|++++.+. ..|++.+|. ++.+|++|+|+|+..
T Consensus 50 ~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~---------------~~~yD~LVlATGs~p 108 (785)
T TIGR02374 50 EADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQ--KQVITDAGR---------------TLSYDKLILATGSYP 108 (785)
T ss_pred CCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCC--CEEEECCCc---------------EeeCCEEEECCCCCc
Confidence 34555555445556678899999999999998754 357777773 799999999999753
No 215
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.07 E-value=0.62 Score=44.93 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.++++|++++.++.++.+...++...|.+.+|. ++.+|.|++|+|.-.+.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT---------------TELFDTVLYATGRKPDI 280 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEcCEEEEeeCCCCCc
Confidence 34566777788899999999999988876556667766662 68999999999986553
No 216
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.36 Score=43.59 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.++-.+|.+..++.|+....+.+|.+.+..+++++ |.|.+.. .+.++||..|+|+|.+.++
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~-------------diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHA-------------DIPLRADFYVLASGSFFSK 319 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccc-------------cCCCChhHeeeeccccccc
Confidence 35566777788899999999999999999999886 8887552 3579999999999987655
No 217
>PLN02815 L-aspartate oxidase
Probab=91.84 E-value=0.54 Score=46.35 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC-Ce---E-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079 42 DSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG-NC---M-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAG 112 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~-~~---~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 112 (287)
....++.+|.+.++++ |+++++++.++++..++ ++ + .|.. .+| ....+.|+.||+|||
T Consensus 153 tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVILATG 219 (594)
T PLN02815 153 TGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTG-------------EVVRFISKVTLLASG 219 (594)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCC-------------eEEEEEeceEEEcCC
Confidence 3456888898888765 89999999999988643 31 3 3443 233 235789999999999
Q ss_pred CCch
Q 023079 113 LSAP 116 (287)
Q Consensus 113 ~~s~ 116 (287)
.+..
T Consensus 220 G~g~ 223 (594)
T PLN02815 220 GAGH 223 (594)
T ss_pred ccee
Confidence 8875
No 218
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.81 E-value=0.76 Score=43.77 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=51.4
Q ss_pred EcCCceee--cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079 34 LSPASGIV--DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 111 (287)
Q Consensus 34 ~~p~~g~v--dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa 111 (287)
....+..+ ....+...+.+.+++.|++++++++|+.++..++++.|++++|.. .+++||+|++|+
T Consensus 202 ie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~-------------~~~~ad~vLvAi 268 (454)
T COG1249 202 VERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEG-------------GTIEADAVLVAI 268 (454)
T ss_pred EecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCC-------------CEEEeeEEEEcc
Confidence 44444433 245677778888888889999999999998877777788877721 168999999999
Q ss_pred CCC
Q 023079 112 GLS 114 (287)
Q Consensus 112 G~~ 114 (287)
|--
T Consensus 269 GR~ 271 (454)
T COG1249 269 GRK 271 (454)
T ss_pred CCc
Confidence 953
No 219
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.62 E-value=0.66 Score=43.67 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
.+...+.+.++++|++++.+++|.++.. + .|.+++|. ++.+|.||.|+|.-.+.+.+.+
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~---------------~i~~d~vi~~~G~~~~~~~~~~ 287 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGE---------------VIPTGLVVWSTGVGPGPLTKQL 287 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCC---------------EEEccEEEEccCCCCcchhhhc
Confidence 5666677778899999999999988853 3 35667772 7999999999998777666555
No 220
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=91.60 E-value=0.78 Score=42.63 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK 120 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~ 120 (287)
...+...|.+++.+.|++++.+.+++.+.. +++.+.|+.. +|. +.+++||.||-|-|.+|. +-+
T Consensus 102 ~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~-------------~~~i~adlvIGADG~~S~-VR~ 167 (390)
T TIGR02360 102 QTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE-------------RHRLDCDFIAGCDGFHGV-SRA 167 (390)
T ss_pred HHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe-------------EEEEEeCEEEECCCCchh-hHH
Confidence 356778888888888999988888877755 4455666654 552 236999999999999985 434
Q ss_pred Hh
Q 023079 121 RF 122 (287)
Q Consensus 121 ~~ 122 (287)
.+
T Consensus 168 ~l 169 (390)
T TIGR02360 168 SI 169 (390)
T ss_pred hc
Confidence 44
No 221
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.55 E-value=0.52 Score=44.56 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
++.|++++.+++|+++..+++.+.+.+.++. ..+++++|++|+|+|+..
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~------------~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTN------------EQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCC------------cEEeeecCEEEECCCCCC
Confidence 4579999999999999988877777654321 123578999999999864
No 222
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=91.49 E-value=0.83 Score=43.60 Aligned_cols=60 Identities=20% Similarity=0.159 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEE-eCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~-~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+...+.+.++++|++++.+++|+++.. +++++. +.+.+|. +.++.+|.||+|+|.-.+
T Consensus 221 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~-------------~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 221 AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGE-------------EKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCc-------------eEEEEeCEEEEeeCCccC
Confidence 34556677778889999999999999975 234443 4455551 236999999999998644
No 223
>PRK07846 mycothione reductase; Reviewed
Probab=91.09 E-value=0.83 Score=43.41 Aligned_cols=56 Identities=9% Similarity=0.173 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+...+.+ ..+.|++++.+++|++++.+++++.|++.+|. ++.+|.||+|+|.-.+.
T Consensus 209 ~~~~l~~-l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 209 ISERFTE-LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS---------------TVEADVLLVATGRVPNG 264 (451)
T ss_pred HHHHHHH-HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCc---------------EeecCEEEEEECCccCc
Confidence 3344433 34568999999999999877667777776662 79999999999986543
No 224
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=91.06 E-value=0.35 Score=45.91 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=59.7
Q ss_pred chhcCCCeeeeeCHHH------HHhhCCCccc-----ceeE-EcCC--ceeecHHH-HHHHHHHHHHHCCc--EEEcCce
Q 023079 4 GTANGVHGLRMLEGFE------AMKMEPELQC-----VKAL-LSPA--SGIVDSHS-LMLSLVGEAENHGT--TFSNNTS 66 (287)
Q Consensus 4 ~~~~g~~~~~~L~~~e------i~~~~P~l~~-----~~al-~~p~--~g~vdp~~-l~~~l~~~a~~~Gv--~~~~~~~ 66 (287)
.++.|++++.++++.+ =..++|.+.. .-++ +.|. .....+.. +-.-+...+++.+. .+..++.
T Consensus 27 L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~ 106 (443)
T COG2072 27 LKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTR 106 (443)
T ss_pred HHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccc
Confidence 4667775577777774 2336777641 1111 2222 22232222 22333344555554 3445555
Q ss_pred eEEEEEe--CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 67 VIGGHLE--GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 67 V~~i~~~--~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
|..+..+ ++.|.|+++++.. .+++||+||+|+|.++....+.+
T Consensus 107 v~~~~~~~~~~~w~V~~~~~~~-------------~~~~a~~vV~ATG~~~~P~iP~~ 151 (443)
T COG2072 107 VEVADWDEDTKRWTVTTSDGGT-------------GELTADFVVVATGHLSEPYIPDF 151 (443)
T ss_pred eEEEEecCCCCeEEEEEcCCCe-------------eeEecCEEEEeecCCCCCCCCCC
Confidence 5555443 4589999998831 12789999999999776655444
No 225
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.89 E-value=1.1 Score=41.95 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
.+...+.+.++++|++++.+++|.++..++ .+ +.+.+|. ++.+|.||+|+|...+ .+++.+
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~---------------~i~~D~vi~a~G~~p~~~~l~~~ 241 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGG---------------VYQADMVILATGIKPNSELAKDS 241 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCC---------------EEEeCEEEECCCccCCHHHHHhc
Confidence 455667777888999999999999997643 33 4445552 7999999999998765 455554
No 226
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=90.87 E-value=0.49 Score=43.30 Aligned_cols=46 Identities=20% Similarity=0.222 Sum_probs=33.0
Q ss_pred CcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 58 GTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
-++++.+++|++++..+ ++|.+++.+.. ++++.++++|.||+|||-
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQ----------TGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETT----------T--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECC----------CCCeEEEecCEEEEcCCc
Confidence 48899999999999987 48888776542 234578999999999994
No 227
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=90.86 E-value=0.72 Score=43.42 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=46.8
Q ss_pred CceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 37 ASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
-.|..++..+...+...+...|++|.. .+|++|+.+++.+.+.+.+... ..+....++.+|++|+|+|+..
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~-------~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 55 TTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSN-------NANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred cccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEecccccc-------cccCCceEecCCEEEECCCccc
Confidence 345666777777777777778898875 6999998887777663321100 0000012799999999999864
No 228
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.80 E-value=1.2 Score=42.50 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+...+.+.++++|++++.+++|++++.+++++.++.. +| ....+.+|.||+|+|.-.
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGG-------------AAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCC-------------ceeEEEeCEEEEccCCcc
Confidence 35566777788899999999999999876566654432 22 123799999999999753
No 229
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=90.78 E-value=0.7 Score=43.41 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHH-HCCcEEEcCceeEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 46 LMLSLVGEAE-NHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 46 l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
-+..|.+++. +.|-.|..+.+|..|...+++|.|++.+ + ++.+|++|++.-.
T Consensus 207 Gmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~----------------~~~ad~~i~tiPl 260 (450)
T COG1231 207 GMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVG----------------QYVADYVLVTIPL 260 (450)
T ss_pred cHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcc----------------eEEecEEEEecCH
Confidence 3455665544 5688899999999999999999999998 6 8999999999764
No 230
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.71 E-value=0.69 Score=43.45 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEe--cCEEEEcCCCC
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLI--PKLVVNSAGLS 114 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~~ 114 (287)
+.+.|++++.+++|+++..+++.+.+.+..+ ++ +++ +|+||+|+|+.
T Consensus 54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~--~~------------~~~~~yd~lIiATG~~ 102 (427)
T TIGR03385 54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKT--NE------------TYEESYDYLILSPGAS 102 (427)
T ss_pred HHhcCCeEEecCEEEEEECCCCEEEEEECCC--CC------------EEecCCCEEEECCCCC
Confidence 3778999988999999987777776665322 11 566 99999999984
No 231
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=90.64 E-value=0.27 Score=43.20 Aligned_cols=58 Identities=16% Similarity=-0.028 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
.+|++.+ ....+++++++|+.+.+.++.|.+.+++|.+ ...+|.||+|.-+ ++....+
T Consensus 108 salak~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~--------------~~~~d~vvla~PA--PQ~~~LL 165 (331)
T COG3380 108 SALAKFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTR--------------HTQFDDVVLAIPA--PQTATLL 165 (331)
T ss_pred HHHHHHH-hccchhhhhhhhhhheecCCeeEEEecCCCc--------------ccccceEEEecCC--Ccchhhc
Confidence 4454433 3357788899999999999999999988742 7899999999653 4444333
No 232
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=90.57 E-value=0.85 Score=43.22 Aligned_cols=60 Identities=22% Similarity=0.237 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHhC
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI 123 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~~ 123 (287)
..|..+|.+....+ ++++++|+.|.+++.++.+.+.+|. +++||.||+++-+ ..+.+.++
T Consensus 215 ~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~---------------~~~~D~VI~t~p~--~~l~~ll~ 274 (444)
T COG1232 215 QSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGE---------------KITADGVISTAPL--PELARLLG 274 (444)
T ss_pred HHHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCc---------------eEEcceEEEcCCH--HHHHHHcC
Confidence 46667776665554 8999999999998777777777773 7999999999876 46666664
No 233
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.38 E-value=1 Score=46.08 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079 47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 122 (287)
Q Consensus 47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~ 122 (287)
...+.+..+++|+++++++.++++..++....|++.+|. ++.+|.||+|+|.-.+. +++..
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~---------------~i~~D~Vi~a~G~~Pn~~la~~~ 246 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS---------------SLEADLIVMAAGIRPNDELAVSA 246 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCC---------------EEEcCEEEECCCCCcCcHHHHhc
Confidence 355566778899999999999988765444457777773 79999999999987543 44433
No 234
>PLN02529 lysine-specific histone demethylase 1
Probab=90.36 E-value=0.78 Score=46.32 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=34.5
Q ss_pred CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+..|+.+++|++|...+++|.|++.++ +++||+||+|.-..
T Consensus 366 ~L~IrLnt~V~~I~~~~dGVtV~t~~~----------------~~~AD~VIVTVPlg 406 (738)
T PLN02529 366 GVPIFYGKTVDTIKYGNDGVEVIAGSQ----------------VFQADMVLCTVPLG 406 (738)
T ss_pred cCCEEcCCceeEEEEcCCeEEEEECCE----------------EEEcCEEEECCCHH
Confidence 456899999999999888999876544 79999999998754
No 235
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.14 E-value=1.3 Score=42.19 Aligned_cols=56 Identities=7% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+...+.+ ..+.|++++++++|++++.+++++.|++.+|. ++.+|.|++|+|.-.+.
T Consensus 212 ~~~~l~~-~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 212 ISDRFTE-IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS---------------TVTADVLLVATGRVPNG 267 (452)
T ss_pred HHHHHHH-HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC---------------EEEcCEEEEeeccCcCC
Confidence 3344443 34568999999999999877667777776662 79999999999975543
No 236
>PLN03000 amine oxidase
Probab=89.90 E-value=0.65 Score=47.56 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++.+|++.. .++.+++|+.|...++++.|++.++ +++||+||+|.-+..
T Consensus 381 ~~LieaLa~~L-----~I~Ln~~Vt~I~~~~dgV~V~~~~~----------------~~~AD~VIvTVPlgV 431 (881)
T PLN03000 381 GRLVQALAENV-----PILYEKTVQTIRYGSNGVKVIAGNQ----------------VYEGDMVLCTVPLGV 431 (881)
T ss_pred HHHHHHHHhhC-----CcccCCcEEEEEECCCeEEEEECCc----------------EEEeceEEEcCCHHH
Confidence 35555555433 4888999999999888999987654 799999999987643
No 237
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=89.89 E-value=0.42 Score=44.49 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=51.6
Q ss_pred eecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 40 IVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
-+=|.-+.+.-++..++.||.++-+..|.++.+....+.++.++|. +++.|+||+|.|.--+.
T Consensus 389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~---------------~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS---------------ELRTDLVVVAVGEEPNS 451 (659)
T ss_pred hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCC---------------eeeeeeEEEEecCCCch
Confidence 4457777777777888889999999999998876666788999994 89999999999976443
No 238
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.88 E-value=1.6 Score=43.09 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHCC----cEEEcCceeEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 42 DSHSLMLSLVGEAENHG----TTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~G----v~~~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
....++..|.+.+++.+ +++++++.++++..+ ++.+ .|...+..+ ++.+.+.|+.||+|||.++
T Consensus 131 tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~----------g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 131 TGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFT----------MEIESFPADAVIMATGGPG 200 (589)
T ss_pred cHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCC----------CcEEEEECCEEEECCCCCc
Confidence 35667888887776543 789999999998874 4544 354322100 1234689999999999988
Q ss_pred h
Q 023079 116 P 116 (287)
Q Consensus 116 ~ 116 (287)
.
T Consensus 201 ~ 201 (589)
T PRK08641 201 I 201 (589)
T ss_pred C
Confidence 6
No 239
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.18 E-value=1.6 Score=41.53 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCc--EEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 45 SLMLSLVGEAENHGT--TFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++.-|-..|+..+. .|.++++|..+...+ +.|.|.+.++.. +.....+|.||+|+|.+.
T Consensus 91 e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~-----------~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 91 EVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGT-----------QIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCc-----------ceeEEEeeEEEEcccCcC
Confidence 555555566776664 688899999998887 799998876621 134788999999999995
No 240
>PTZ00058 glutathione reductase; Provisional
Probab=88.91 E-value=2.2 Score=41.86 Aligned_cols=58 Identities=12% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++|++++.++.|.+++.+++ ++.+...++. .++.+|.|++|+|.-..
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~--------------~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR--------------KYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC--------------EEEECCEEEECcCCCCC
Confidence 4556677788889999999999999986543 4555443331 26999999999996533
No 241
>PLN02576 protoporphyrinogen oxidase
Probab=88.77 E-value=1.5 Score=41.94 Aligned_cols=52 Identities=23% Similarity=0.203 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCe-EEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 45 SLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNC-MNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 45 ~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~-~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
.++.+|++. .+ .+++.+++|++|+..+++ |.|+.. +|. .+++||+||+|+-+
T Consensus 240 ~L~~~la~~---l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~--------------~~~~ad~VI~a~P~ 295 (496)
T PLN02576 240 TLPDALAKR---LGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGK--------------VNVTAKAVVMTAPL 295 (496)
T ss_pred HHHHHHHHh---hCcCcEEcCCEEEEEEECCCCcEEEEEecCCCc--------------eeEEeCEEEECCCH
Confidence 455555433 35 689999999999988775 766543 331 26999999999864
No 242
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=88.70 E-value=0.96 Score=46.57 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+..+........+++|++++.+++|+++..+. ..|.+.+|. ++++|++|+|+|++.
T Consensus 58 ~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~---------------~i~yD~LVIATGs~p 113 (847)
T PRK14989 58 AEELSLVREGFYEKHGIKVLVGERAITINRQE--KVIHSSAGR---------------TVFYDKLIMATGSYP 113 (847)
T ss_pred HHHccCCCHHHHHhCCCEEEcCCEEEEEeCCC--cEEEECCCc---------------EEECCEEEECCCCCc
Confidence 34444444455677899999999999987753 346677772 799999999999863
No 243
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=88.35 E-value=1.4 Score=41.02 Aligned_cols=46 Identities=4% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++|++++.++.|+.+..++. .|.+++|. ++.+|++|+|+|+...
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~---------------~~~yd~LViATGs~~~ 113 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGE---------------SWHWDQLFIATGAAAR 113 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCC--EEEECCCC---------------EEEcCEEEEccCCCCC
Confidence 4567999999999999987643 45566662 7999999999998753
No 244
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.97 E-value=2.1 Score=40.92 Aligned_cols=60 Identities=12% Similarity=0.088 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.+...+.+.++++ ++++.+++|++++..++.+.|+..++. ++..++.+|.||+|+|.-.+
T Consensus 216 ~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~-----------~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 216 DIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKK-----------APAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred HHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCC-----------CcceEEEeCEEEEeeccccc
Confidence 4456666777777 999999999999877667666654331 01236999999999998654
No 245
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=87.94 E-value=2.1 Score=45.70 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHH---CCcEEEcCceeEEEEEeC-----C----eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079 44 HSLMLSLVGEAEN---HGTTFSNNTSVIGGHLEG-----N----CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 110 (287)
Q Consensus 44 ~~l~~~l~~~a~~---~Gv~~~~~~~V~~i~~~~-----~----~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 110 (287)
..++..|.+.+++ .|++|+++++++++..++ + ++ .|...+.. ...++.+.|.|+.||+|
T Consensus 544 ~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~--------~~~g~~~~i~AkaVILA 615 (1167)
T PTZ00306 544 FTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS--------DASGQVMDLLADAVILA 615 (1167)
T ss_pred HHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc--------cCCCcEEEEEeceEEEe
Confidence 4567777777665 499999999999998753 1 34 24433110 00112457999999999
Q ss_pred CCCCch
Q 023079 111 AGLSAP 116 (287)
Q Consensus 111 aG~~s~ 116 (287)
||.+..
T Consensus 616 TGGf~~ 621 (1167)
T PTZ00306 616 TGGFSN 621 (1167)
T ss_pred cCCccc
Confidence 999886
No 246
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.58 E-value=2.6 Score=43.42 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHHCCcEEEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079 47 MLSLVGEAENHGTTFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 122 (287)
Q Consensus 47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~ 122 (287)
...+.+.++++|++++.++.++++..+++ ...|.+.+|. ++.+|.||+|+|.-.+. |++..
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~---------------~i~~D~Vv~A~G~rPn~~L~~~~ 253 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS---------------ELEVDFIVFSTGIRPQDKLATQC 253 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCC---------------EEEcCEEEECCCcccCchHHhhc
Confidence 45566778899999999999999976532 3457777773 79999999999987665 44444
No 247
>PLN02546 glutathione reductase
Probab=87.32 E-value=2.4 Score=41.57 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+...+.+.++++|++++.++.|+++... ++.+.|++.++ ....+|.||+|+|.-.+.
T Consensus 294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g---------------~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG---------------TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe---------------EEEecCEEEEeeccccCC
Confidence 44455667778899999999999999764 34456666555 134489999999987654
No 248
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=87.32 E-value=2.2 Score=40.64 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHHCCcEEEcCceeEEEE--EeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 49 SLVGEAENHGTTFSNNTSVIGGH--LEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 49 ~l~~~a~~~Gv~~~~~~~V~~i~--~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+.+.+++.|++++.++ +..+. ...+.+.|++.+|. ..++.+|+||+|+|+..
T Consensus 97 ~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~-------------~~~~~~d~lViATGs~p 151 (466)
T PRK07845 97 DIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGG-------------EETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCc-------------eEEEecCEEEEcCCCCC
Confidence 34445667899998764 43433 34466778877662 12699999999999854
No 249
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.89 E-value=2.6 Score=36.93 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=38.4
Q ss_pred HHHHHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 49 SLVGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 49 ~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+.+.++++ |++++.++.++++...+....|+..+.. .++..++.+|.||.|+|.-.+.
T Consensus 181 ~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~~~~ 240 (300)
T TIGR01292 181 ILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTV----------TGEEEELKVDGVFIAIGHEPNT 240 (300)
T ss_pred HHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecC----------CCceEEEEccEEEEeeCCCCCh
Confidence 344556666 9999999999999765432234432210 0123479999999999965543
No 250
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=86.49 E-value=0.94 Score=41.47 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHCCcEEEcCceeEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 023079 54 AENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG 112 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG 112 (287)
|++..-.+.++.+|++|+..++ .|.|++.+. .+...++.|++||+|+|
T Consensus 105 a~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~-----------~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 105 AEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS-----------DGDGETYRARNVVLATG 156 (341)
T ss_dssp HCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET-----------TS-EEEEEESEEEE---
T ss_pred HHhCCCceEECCEEEEEEEecCCCccEEEEEEeec-----------CCCeeEEEeCeEEECcC
Confidence 3444554777899999987643 488888421 01134899999999999
No 251
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=86.49 E-value=2.6 Score=39.86 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
.+...+.+.++++|++++.+++|++++. . .|++++|. ++.+|.|++|+|.-.+ .+++..
T Consensus 190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~---------------~~~~D~vl~a~G~~pn~~~l~~~ 249 (438)
T PRK13512 190 DMNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGK---------------VEHYDMIIEGVGTHPNSKFIESS 249 (438)
T ss_pred HHHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCC---------------EEEeCEEEECcCCCcChHHHHhc
Confidence 4556677778889999999999998853 2 35555562 7999999999998654 344444
No 252
>PRK02106 choline dehydrogenase; Validated
Probab=86.04 E-value=2.2 Score=41.66 Aligned_cols=62 Identities=19% Similarity=0.097 Sum_probs=41.6
Q ss_pred HHHHHH-HCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-chHHHHHh
Q 023079 50 LVGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF 122 (287)
Q Consensus 50 l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~-s~~l~~~~ 122 (287)
++..+. +.+++++.++.|+.|..+++++ .|+..+.. ++...+.|+.||+|+|++ +++|+...
T Consensus 206 ~l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~-----------~~~~~~~ak~VILaaGai~TP~LLl~S 270 (560)
T PRK02106 206 YLDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGG-----------GRETARARREVILSAGAINSPQLLQLS 270 (560)
T ss_pred hhccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCC-----------cEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence 333343 4579999999999998876654 35543321 112357899999999986 45666544
No 253
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.87 E-value=1.3 Score=41.14 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=38.3
Q ss_pred CCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 57 HGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 57 ~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
..+.++..++|.+++.++++ +.+.+...+ +++.++++.|.||+|||-.
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~----------~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHE----------TGELETVETDAVILATGYR 339 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeecc----------CCCceEEEeeEEEEecccc
Confidence 46889999999999999865 776654442 3456789999999999976
No 254
>PRK10262 thioredoxin reductase; Provisional
Probab=85.86 E-value=2.5 Score=37.97 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
+...+.+.++++|++++.++.++++..+++++ .|+..++.. .++..++.+|.||+|+|.-.+.-
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~---------~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCC---------CCeEEEEECCEEEEEeCCccChh
Confidence 45566666778899999999999997654333 344433210 01123799999999999766553
No 255
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=85.74 E-value=1.6 Score=44.57 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++.+|++. . .++.+++|+.|...+++|.|. .+|. +++||+||+|.-...
T Consensus 437 ~~Li~aLa~~---L--~I~ln~~V~~I~~~~dgV~V~-~~G~---------------~~~AD~VIvTvPl~v 487 (808)
T PLN02328 437 DTFVRELAKD---L--PIFYERTVESIRYGVDGVIVY-AGGQ---------------EFHGDMVLCTVPLGV 487 (808)
T ss_pred HHHHHHHHhh---C--CcccCCeeEEEEEcCCeEEEE-eCCe---------------EEEcCEEEECCCHHH
Confidence 3455555432 2 378899999999988888874 4452 799999999987654
No 256
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=85.63 E-value=2.3 Score=40.20 Aligned_cols=55 Identities=27% Similarity=0.206 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeC-Ce-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.+-+.+....+++|++|..++.+.+++... +. ..|.+.+|. ++.||.||++.|+-
T Consensus 256 ~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~---------------~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 256 SIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK---------------TLEADLVVVGIGIK 312 (478)
T ss_pred HHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC---------------EeccCeEEEeeccc
Confidence 344556667789999999999999998764 34 458999984 89999999999974
No 257
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.36 E-value=42 Score=33.48 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHCCc--EEEcCceeEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENHGT--TFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv--~~~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+=.++-..|.+.+.+.|+ ++..+++|++++.++ +.+.|+..+..+ ...+++.+++||+||=|=|++|.
T Consensus 139 ~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~-------~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 139 NQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG-------EHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC-------CCCCceEEEEeCEEEECCCCchH
Confidence 334566677777777764 778899999998754 236665542100 00112348999999999999874
Q ss_pred HHHHHh
Q 023079 117 ALAKRF 122 (287)
Q Consensus 117 ~l~~~~ 122 (287)
+-+.+
T Consensus 212 -VR~~l 216 (634)
T PRK08294 212 -VRKAI 216 (634)
T ss_pred -HHHhc
Confidence 44545
No 258
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.95 E-value=4 Score=42.40 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHC----CcEEEcCceeEEEEEeCCeE-EEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 43 SHSLMLSLVGEAENH----GTTFSNNTSVIGGHLEGNCM-NVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 43 p~~l~~~l~~~a~~~----Gv~~~~~~~V~~i~~~~~~~-~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
...++..|.+.+.++ ++++.++..++++..+++++ .|.. .+| +.+.|.|+.||+|||.+
T Consensus 138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~ 204 (897)
T PRK13800 138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNTRTG-------------EFVTVGAKAVILATGPC 204 (897)
T ss_pred chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEecCCC-------------cEEEEECCEEEECCCcc
Confidence 345666777766544 67888888877887666654 3432 334 24579999999999997
Q ss_pred ch
Q 023079 115 AP 116 (287)
Q Consensus 115 s~ 116 (287)
+.
T Consensus 205 g~ 206 (897)
T PRK13800 205 GR 206 (897)
T ss_pred cc
Confidence 64
No 259
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=84.53 E-value=1.5 Score=36.13 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHHHCCcEEEcCceeEEEEEeCCeE-----EE---EecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 49 SLVGEAENHGTTFSNNTSVIGGHLEGNCM-----NV---YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~-----~V---~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.+.+.+...+++++.+++|.++......+ .+ .+.++ .++.+|+||+|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDG---------------REIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTE---------------EEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCc---------------eEecCCeeeecCccc
Confidence 44555567899998889999998877632 22 22222 389999999999965
No 260
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.01 E-value=5.5 Score=37.73 Aligned_cols=59 Identities=10% Similarity=0.016 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+...+.+..+++ ++++.+++|.+++..++ .+.++..++. ..++++|.||+|+|.-.+
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~-------------~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK-------------TETIEADYVLVATGRRPN 269 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc-------------eEEEEeCEEEEccCCccC
Confidence 34566677777888 99999999999987654 4555433331 126999999999997433
No 261
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=83.62 E-value=2.7 Score=38.11 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHHHH----HHHC--CcEEEcCceeEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 45 SLMLSLVGE----AENH--GTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 45 ~l~~~l~~~----a~~~--Gv~~~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++.+|... +..+ -++|..+++|++|.++++++. |+ ..+| ....+.++.||+|+|.++
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sg-------------ek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASG-------------EKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCC-------------CccceecCceEEecCCcC
Confidence 445555544 3333 378999999999998877663 43 2333 234789999999999887
Q ss_pred h---HHHHHh
Q 023079 116 P---ALAKRF 122 (287)
Q Consensus 116 ~---~l~~~~ 122 (287)
- .+++..
T Consensus 207 ysd~~lLKey 216 (477)
T KOG2404|consen 207 YSDKELLKEY 216 (477)
T ss_pred cChHHHHHHh
Confidence 5 355544
No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=83.45 E-value=4.5 Score=38.65 Aligned_cols=67 Identities=24% Similarity=0.232 Sum_probs=43.0
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCeEE-EEec-----CCcccccCCCCCCCCCceeEecCEEEEcCCCCch--HHHHH
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-----ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP--ALAKR 121 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~-----~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~--~l~~~ 121 (287)
..+.+++.|++|++++.++++..+++++. |+.. +| +.....+.+.++.+|.||+|+|.-.+ .+++.
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g------~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~ 408 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEG------DFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ 408 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCC------CccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence 34567788999999999999976555553 4321 22 00111234568999999999996653 35443
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 409 ~ 409 (471)
T PRK12810 409 F 409 (471)
T ss_pred c
Confidence 3
No 263
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=83.09 E-value=2.8 Score=40.87 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=36.7
Q ss_pred HCCcEEEcCceeEEEEEeC---CeEE---EEec-CCcccccCCCCCCCCCceeEecCEEEEcCC-CCchHHHHHh
Q 023079 56 NHGTTFSNNTSVIGGHLEG---NCMN---VYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAG-LSAPALAKRF 122 (287)
Q Consensus 56 ~~Gv~~~~~~~V~~i~~~~---~~~~---V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG-~~s~~l~~~~ 122 (287)
...++++.++.|+.|..+. +++. +.+. +| +.++++|+.||+||| ..+.+|+-..
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g-------------~~~~v~A~~vVLAagaIetpRLLL~S 287 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSG-------------DRFEIKADVYVLACGAVHNPQILVNS 287 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCC-------------cEEEEECCEEEEccCchhhHHHHHhC
Confidence 3359999999999998753 2342 3332 34 246799999999998 4555665443
No 264
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=82.59 E-value=4.1 Score=38.86 Aligned_cols=50 Identities=8% Similarity=-0.036 Sum_probs=34.2
Q ss_pred HHHHHCCcEEEcCceeEEEEEe-----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 52 GEAENHGTTFSNNTSVIGGHLE-----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~-----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..+++.|++++.+ .++.+... ++.+.|.+.+|. ..++++|+||+|+|...
T Consensus 100 ~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~-------------~~~~~~d~lViATGs~p 154 (472)
T PRK05976 100 ALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGE-------------NEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCc-------------eEEEEcCEEEEeCCCCC
Confidence 3456679999876 45445432 236778877662 12799999999999854
No 265
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=82.49 E-value=1.4 Score=42.53 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=53.1
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVV 108 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV 108 (287)
|++.+.+ ++|=..+-..|.+..++. +..+++ ..|.++..+++ . +.|.|.+|. +|.|+.||
T Consensus 89 AVra~Ra-QaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~~~~v~GV~t~~G~---------------~~~a~aVV 151 (621)
T COG0445 89 AVRAPRA-QADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEEGQRVVGVVTADGP---------------EFHAKAVV 151 (621)
T ss_pred hhcchhh-hhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcCCCeEEEEEeCCCC---------------eeecCEEE
Confidence 4454443 888888888888888765 788876 46778877655 3 469999994 89999999
Q ss_pred EcCCCCchH
Q 023079 109 NSAGLSAPA 117 (287)
Q Consensus 109 ~aaG~~s~~ 117 (287)
+++|-+...
T Consensus 152 lTTGTFL~G 160 (621)
T COG0445 152 LTTGTFLRG 160 (621)
T ss_pred Eeecccccc
Confidence 999987654
No 266
>PLN02976 amine oxidase
Probab=82.40 E-value=3 Score=45.17 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=34.3
Q ss_pred cEEEcCceeEEEEEe----------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 59 TTFSNNTSVIGGHLE----------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 59 v~~~~~~~V~~i~~~----------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..|+++++|+.|... +++|.|+|.+|. +|+||+||+|.-...
T Consensus 946 L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe---------------tftADaVIVTVPLGV 997 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS---------------EFLGDAVLITVPLGC 997 (1713)
T ss_pred CCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC---------------EEEeceEEEeCCHHH
Confidence 358899999999884 357889998883 799999999987643
No 267
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=81.97 E-value=4 Score=38.61 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=32.6
Q ss_pred HHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 47 MLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
...+.+.+++.|++++.+ ++..+.. +.+.|.+ +|. .+++|+||+|+|..
T Consensus 93 ~~~~~~~l~~~gV~~~~g-~~~~v~~--~~v~v~~-~g~---------------~~~~d~lIiATGs~ 141 (446)
T TIGR01424 93 SGLYKRLLANAGVELLEG-RARLVGP--NTVEVLQ-DGT---------------TYTAKKILIAVGGR 141 (446)
T ss_pred HHHHHHHHHhCCcEEEEE-EEEEecC--CEEEEec-CCe---------------EEEcCEEEEecCCc
Confidence 334445567789999865 5655532 3455543 341 79999999999975
No 268
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=81.63 E-value=1.6 Score=40.82 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred EEcCCceeecHHHHHHHHHHHHHHCC-cEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079 33 LLSPASGIVDSHSLMLSLVGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 111 (287)
Q Consensus 33 l~~p~~g~vdp~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa 111 (287)
+|..-.|.+++.....-+.+.+.+.+ ++|.+ .+|++|+.++.+ |++.++. .|..|.+|+|.
T Consensus 46 L~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~k~--V~~~~~~---------------~i~YD~LVval 107 (405)
T COG1252 46 LYEVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDAKK--VTLADLG---------------EISYDYLVVAL 107 (405)
T ss_pred hhhhhcCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccCCE--EEeCCCc---------------cccccEEEEec
Confidence 45566778888888888888888555 99986 589999987765 5555531 79999999999
Q ss_pred CCCchHH
Q 023079 112 GLSAPAL 118 (287)
Q Consensus 112 G~~s~~l 118 (287)
|+-....
T Consensus 108 Gs~~~~f 114 (405)
T COG1252 108 GSETNYF 114 (405)
T ss_pred CCcCCcC
Confidence 9876654
No 269
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=81.47 E-value=4.7 Score=38.55 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+++.|++++.++ +.. .+.+.+.|++.+|. ..++++|+||+|+|+.
T Consensus 103 ~~~~gV~~~~g~-a~~--~~~~~v~v~~~~g~-------------~~~~~~d~lViATGs~ 147 (471)
T PRK06467 103 AKGRKVTVVNGL-GKF--TGGNTLEVTGEDGK-------------TTVIEFDNAIIAAGSR 147 (471)
T ss_pred HHhCCCEEEEEE-EEE--ccCCEEEEecCCCc-------------eEEEEcCEEEEeCCCC
Confidence 466799998764 322 23456777766551 1379999999999974
No 270
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=81.24 E-value=64 Score=33.01 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=40.0
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
++=..+...|.+.+.+.|++++++++|+++.. - .+++|.||.|.|.+|.-
T Consensus 94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~----------------~~~~D~VVgADG~~S~v 143 (765)
T PRK08255 94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------L----------------AADADLVIASDGLNSRI 143 (765)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------h----------------hcCCCEEEEcCCCCHHH
Confidence 55678889999999999999999998866521 1 35799999999998753
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.15 E-value=5.2 Score=38.73 Aligned_cols=57 Identities=12% Similarity=0.074 Sum_probs=39.1
Q ss_pred HHHHHHH-CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 50 LVGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 50 l~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+.+.+++ +|++++.++.|+++..+++++. |++.++.+ ++..++.+|.||+|+|.-.+
T Consensus 393 l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~----------~~~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 393 LQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNS----------GEEKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred HHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCC----------CcEEEEEcCEEEEEeCCcCC
Confidence 3444554 6999999999999977655543 65543311 11247999999999997654
No 272
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=80.61 E-value=9.9 Score=38.08 Aligned_cols=70 Identities=7% Similarity=-0.139 Sum_probs=39.8
Q ss_pred HHHHHHHH-HHCCcEEEcCceeEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 47 MLSLVGEA-ENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 47 ~~~l~~~a-~~~Gv~~~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
...+.+.. +++|++++.++.|.+++..++. +.|++.++..++.........+..++++|.|++|+|.-.+
T Consensus 356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 33344443 5689999999999999875432 5554332100000000000111236999999999997644
No 273
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=80.42 E-value=3.4 Score=39.43 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
-...++.+|.+.+.+ .++++++++.+.++..+++ .+ .|.+.+..+ +...+.|+.||+|+|....-
T Consensus 131 TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~-----------~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 131 TGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNG-----------ELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred ccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCC-----------eEEEEecCeEEEecCCCccc
Confidence 346788899988887 5999999999999988877 55 566543310 13489999999999986543
No 274
>PLN02507 glutathione reductase
Probab=80.38 E-value=6.3 Score=38.02 Aligned_cols=47 Identities=17% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+.+.|++++.+ ++..+ ..+.+.|++.+|. +.++++|+||+|+|+..
T Consensus 133 ~l~~~gV~~i~g-~a~~v--d~~~v~V~~~~g~-------------~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 133 LLANAGVKLYEG-EGKIV--GPNEVEVTQLDGT-------------KLRYTAKHILIATGSRA 179 (499)
T ss_pred HHHhCCcEEEEE-EEEEe--cCCEEEEEeCCCc-------------EEEEEcCEEEEecCCCC
Confidence 345578988865 44433 3356788877762 23589999999999743
No 275
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=78.19 E-value=9.1 Score=36.26 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=33.0
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+...++++|++++.++ +..+ ..+.+.|.+.+|. ..++++|+||+|+|..
T Consensus 100 ~~~~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~-------------~~~~~~d~lviATGs~ 148 (461)
T PRK05249 100 RRGQYERNRVDLIQGR-ARFV--DPHTVEVECPDGE-------------VETLTADKIVIATGSR 148 (461)
T ss_pred HHHHHHHCCCEEEEEE-EEEe--cCCEEEEEeCCCc-------------eEEEEcCEEEEcCCCC
Confidence 3344667899998764 3323 3356777776651 1369999999999964
No 276
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=78.09 E-value=3.8 Score=38.41 Aligned_cols=65 Identities=17% Similarity=0.192 Sum_probs=51.6
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 111 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa 111 (287)
=+|.|++-+|+|..|-.+ .+.|+-+..+..|..+..+++. |...+|. +|.-|+.+||+
T Consensus 250 iffepd~FfvspeDLp~~-----~nGGvAvl~G~kvvkid~~d~~--V~LnDG~---------------~I~YdkcLIAT 307 (659)
T KOG1346|consen 250 IFFEPDGFFVSPEDLPKA-----VNGGVAVLRGRKVVKIDEEDKK--VILNDGT---------------TIGYDKCLIAT 307 (659)
T ss_pred eEecCCcceeChhHCccc-----ccCceEEEeccceEEeecccCe--EEecCCc---------------Eeehhheeeec
Confidence 356888889999987653 5568889999999999877654 6677883 89999999999
Q ss_pred CCCchHH
Q 023079 112 GLSAPAL 118 (287)
Q Consensus 112 G~~s~~l 118 (287)
|.--..+
T Consensus 308 G~~Pk~l 314 (659)
T KOG1346|consen 308 GVRPKKL 314 (659)
T ss_pred CcCcccc
Confidence 9865443
No 277
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=77.31 E-value=10 Score=37.88 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=42.1
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEe---c------CCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYI---S------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t---~------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+.+++.|++|++++.++++... ++.+ .|++ . +| .|+...+.+.++.+.+|.||+|.|.-..
T Consensus 512 e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G----~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 512 EVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQG----RRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCC----CCcceeCCCceEEEECCEEEECccCCCC
Confidence 345678889999999999888653 3444 2332 1 22 1233344566678999999999996544
No 278
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=77.12 E-value=68 Score=30.46 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=61.3
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEecC-CcccccCCCCCCCCCc----eeEecCEEEEc
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISE-SKNLRNWDGVSPLQPE----LTLIPKLVVNS 110 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t~~-g~~~~~~~~~~~~~~~----~~i~a~~VV~a 110 (287)
...|.-..+++.|.+.|++.|+++.-+..+..+... ++.+ .|.|.| |.+ ..+.+-.+ ..++|++.|.|
T Consensus 177 NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~-----k~G~pKd~FerGme~hak~TifA 251 (621)
T KOG2415|consen 177 NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGIS-----KDGAPKDTFERGMEFHAKVTIFA 251 (621)
T ss_pred cEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecccccc-----CCCCccccccccceecceeEEEe
Confidence 346678899999999999999999988877776654 4444 355543 100 00001111 25899999999
Q ss_pred CCCCc---hHHHHHhCCCCCcccCCcccc-ceEEEEEcCC
Q 023079 111 AGLSA---PALAKRFIGLDNVFIPPAYYA-RGCYFSLANT 146 (287)
Q Consensus 111 aG~~s---~~l~~~~~~~~~~~~p~~~~~-~g~~~~~~~~ 146 (287)
-|+.. .++++.+ +....-.|.-|.. --+++.+++.
T Consensus 252 EGc~G~Lskqi~kkf-~Lr~n~e~qtYglGlKEvWei~~~ 290 (621)
T KOG2415|consen 252 EGCHGSLSKQIIKKF-DLRENCEPQTYGLGLKEVWEIDPE 290 (621)
T ss_pred ccccchhHHHHHHHh-CcccCCCcceeccccceeEecChh
Confidence 88764 4455555 3332334422211 1156667653
No 279
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=76.77 E-value=11 Score=35.77 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=40.6
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEe-CCeE-EEEec---------CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~-~V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+.+++.|++|++++.++++..+ ++++ .|+.. +|. .+..-..+.+..+.+|.||+|.|.-.+.
T Consensus 315 ~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~----~~~~~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 315 EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGE----RRFLPCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCC----eeeeecCCceEEEECCEEEECCCCCCCc
Confidence 345677889999999999998754 3444 24332 220 0011112344579999999999976543
No 280
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=75.12 E-value=5.4 Score=39.96 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=38.8
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
...+++|++++.+.+|+.|.+.+. .|.|+.|. ++.-|++|+|+|...
T Consensus 67 dwy~~~~i~L~~~~~v~~idr~~k--~V~t~~g~---------------~~~YDkLilATGS~p 113 (793)
T COG1251 67 DWYEENGITLYTGEKVIQIDRANK--VVTTDAGR---------------TVSYDKLIIATGSYP 113 (793)
T ss_pred hhHHHcCcEEEcCCeeEEeccCcc--eEEccCCc---------------EeecceeEEecCccc
Confidence 346889999999999999987653 47788883 899999999999753
No 281
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=73.57 E-value=13 Score=35.35 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=30.3
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+++|++++.+.. .+. ..+++.|.+.+|. +.++++|+||+|+|+..
T Consensus 103 ~~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~-------------~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 103 FRKNKVDWIKGWG--RLD-GVGKVVVKAEDGS-------------ETQLEAKDIVIATGSEP 148 (466)
T ss_pred HHhCCCEEEEEEE--EEc-cCCEEEEEcCCCc-------------eEEEEeCEEEEeCCCCC
Confidence 4456888876541 232 2345677766652 23699999999999854
No 282
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=73.07 E-value=11 Score=35.91 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=39.5
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCe---EEEEe-------cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNC---MNVYI-------SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~---~~V~t-------~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+.+++.|++|++++.+..+..++++ +.+.. .+|. ++ ....+...++.+|.||+|.|.-.+
T Consensus 317 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~----~~-~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 317 EVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGR----RR-VPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCC----cc-cCCCCceEEEECCEEEECccCCCC
Confidence 345678899999999999998765543 33321 1110 00 001123457999999999997655
No 283
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=72.89 E-value=11 Score=36.07 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=30.6
Q ss_pred HHHHCCcEEEcCceeEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 53 EAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++..|++++.+ ++..+...++.+.|.+. ++ + ++++|+||+|+|...
T Consensus 109 ~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~---~------------~~~~d~lViATGs~p 157 (475)
T PRK06327 109 LFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDE---T------------VITAKHVIIATGSEP 157 (475)
T ss_pred HHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCC---e------------EEEeCEEEEeCCCCC
Confidence 345679998865 44445444444555443 23 1 799999999999754
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.14 E-value=13 Score=35.21 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=32.2
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+...+++.|++++.++ ++.+ +.+.+.|.+.++. .++++|+||+|+|+..
T Consensus 98 ~~~~~~~~gv~~~~g~-~~~~--~~~~~~v~~~~~~--------------~~~~~d~lViAtGs~p 146 (462)
T PRK06416 98 VEGLLKKNKVDIIRGE-AKLV--DPNTVRVMTEDGE--------------QTYTAKNIILATGSRP 146 (462)
T ss_pred HHHHHHhCCCEEEEEE-EEEc--cCCEEEEecCCCc--------------EEEEeCEEEEeCCCCC
Confidence 3344567899998764 4333 3345667654331 2799999999999864
No 285
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=72.02 E-value=13 Score=36.04 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=37.8
Q ss_pred HHHHHH-CCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 51 VGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 51 ~~~a~~-~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+...+ .|++++.++.++++...++.+. |+..++.+ +++.++.+|.|++|.|.-.
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~----------g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTT----------GEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCC----------CcEEEEEcCEEEEeECCcc
Confidence 333444 5999999999999987655543 55443211 1234799999999999865
No 286
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=71.85 E-value=16 Score=34.74 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=42.9
Q ss_pred eeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeC-CeE-EEEecCCcccccCCCCCCCCCceeEecCEEE
Q 023079 31 KALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEG-NCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVV 108 (287)
Q Consensus 31 ~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV 108 (287)
.++..|.=| ...+.+++.+.+.-.|+++..++.|.++.... +.+ .|.+ +| | +++|++||
T Consensus 222 sPfLyP~YG---~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~g---e------------~v~~k~vI 282 (438)
T PF00996_consen 222 SPFLYPLYG---LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EG---E------------VVKAKKVI 282 (438)
T ss_dssp SSEEEETT----TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TT---E------------EEEESEEE
T ss_pred CCEEEEccC---CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CC---E------------EEEcCEEE
Confidence 355555555 25999999999999999999999999998753 443 4665 45 2 89999999
Q ss_pred Ec
Q 023079 109 NS 110 (287)
Q Consensus 109 ~a 110 (287)
..
T Consensus 283 ~d 284 (438)
T PF00996_consen 283 GD 284 (438)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 287
>PRK09897 hypothetical protein; Provisional
Probab=71.66 E-value=11 Score=36.75 Aligned_cols=59 Identities=5% Similarity=-0.028 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
|...+..|.+..++.-.++....+=..++.++++..+.+.++ .+..|+||||+|--.-+
T Consensus 391 P~~sa~~l~~l~~aG~L~v~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~a~G~~~~~ 449 (534)
T PRK09897 391 PSESIRRLLALREAGIIHILALGEDYEMEINESRTVIKTEDN----------------SYSFDVFIDARGQRPLK 449 (534)
T ss_pred ChHHHHHHHHHHHcCCEEEEecCccceeEecCCeEEEEeCCC----------------ceEeCEEEECCCCCCCc
Confidence 344445455444443456665444334577777888888765 79999999999975444
No 288
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=71.00 E-value=17 Score=35.47 Aligned_cols=64 Identities=20% Similarity=0.072 Sum_probs=41.9
Q ss_pred HHHHHH-HCCcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH-HHHHh
Q 023079 50 LVGEAE-NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF 122 (287)
Q Consensus 50 l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~-l~~~~ 122 (287)
+...|. +.+.++.+++.|+.|..+++++. |+...+..+ ..+..+.++.||+|||+..+. |+...
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~---------~~~~~~a~~~viL~AGai~Sp~LL~~S 274 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGG---------TIETAVAAREVVLAAGAINSPKLLLLS 274 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCC---------ceEEEecCceEEEeccccCCHHHHHhc
Confidence 333344 45699999999999999988754 433222000 023568899999999987654 44444
No 289
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=70.86 E-value=12 Score=34.10 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCc-------ccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 49 SLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESK-------NLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 49 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~-------~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.+.+.++++|+++++++.+.+++.++....|+..++. +...| ....++..++.+|.||+|+|.-...
T Consensus 215 ~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 215 YEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRP--VPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCc--eecCCCeEEEECCEEEECcccCCCc
Confidence 3445577889999999999888755332233321110 00000 0011234579999999999987654
No 290
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=70.14 E-value=16 Score=34.65 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=29.4
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+++.|++++.+. +..+ ..+.+.|.++++. .++++|+||+|+|...
T Consensus 100 ~~~~~v~~~~g~-a~~~--~~~~v~v~~~~~~--------------~~~~~d~lviATGs~p 144 (458)
T PRK06912 100 MKKNKIKVIQGK-ASFE--TDHRVRVEYGDKE--------------EVVDAEQFIIAAGSEP 144 (458)
T ss_pred HhhCCcEEEEEE-EEEc--cCCEEEEeeCCCc--------------EEEECCEEEEeCCCCC
Confidence 445688887643 3222 3455677765541 2699999999999864
No 291
>PLN02785 Protein HOTHEAD
Probab=70.11 E-value=17 Score=35.96 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=37.6
Q ss_pred HHHHHHCCcEEEcCceeEEEEEeCC----eE-EEEe--cCCcccccCCCCCCCCCceeE-----ecCEEEEcCCC-CchH
Q 023079 51 VGEAENHGTTFSNNTSVIGGHLEGN----CM-NVYI--SESKNLRNWDGVSPLQPELTL-----IPKLVVNSAGL-SAPA 117 (287)
Q Consensus 51 ~~~a~~~Gv~~~~~~~V~~i~~~~~----~~-~V~t--~~g~~~~~~~~~~~~~~~~~i-----~a~~VV~aaG~-~s~~ 117 (287)
...+...+++++.++.|+.|..+++ +. .|+. .+|. +.+. .++.||+|||+ .+++
T Consensus 227 ~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~-------------~~~~~~~~~~~~eVILsAGai~sP~ 293 (587)
T PLN02785 227 LAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGN-------------QHQAFLSNNKGSEIILSAGAIGSPQ 293 (587)
T ss_pred HhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCc-------------eEEEEeecccCceEEecccccCCHH
Confidence 3345567899999999999987642 33 3554 3341 1222 34789999998 5556
Q ss_pred HHHHh
Q 023079 118 LAKRF 122 (287)
Q Consensus 118 l~~~~ 122 (287)
|+...
T Consensus 294 lL~~S 298 (587)
T PLN02785 294 MLLLS 298 (587)
T ss_pred HHHHc
Confidence 65544
No 292
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.96 E-value=7.5 Score=35.71 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=50.7
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
+..+++.+|.+..++..+.+.+--++..+... ++-+.|++++|. .+.++.||+++|+--+.+
T Consensus 264 eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGa---------------vLkaktvIlstGArWRn~ 328 (520)
T COG3634 264 EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGA---------------VLKARTVILATGARWRNM 328 (520)
T ss_pred cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCc---------------eeccceEEEecCcchhcC
Confidence 45688888888888889999888888888874 456789999994 799999999999865554
No 293
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=69.40 E-value=14 Score=35.10 Aligned_cols=44 Identities=7% Similarity=0.032 Sum_probs=29.3
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+...++++|++++.++.+ + ..++.+.| ++. .+++|+||+|+|..
T Consensus 97 ~~~~l~~~gv~~~~g~~~--~-~~~~~v~v---~~~---------------~~~~d~vIiAtGs~ 140 (450)
T TIGR01421 97 YQKNLEKNKVDVIFGHAR--F-TKDGTVEV---NGR---------------DYTAPHILIATGGK 140 (450)
T ss_pred HHHHHHhCCCEEEEEEEE--E-ccCCEEEE---CCE---------------EEEeCEEEEecCCC
Confidence 445567789999987654 2 22333333 341 79999999999964
No 294
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=68.73 E-value=4.2 Score=37.12 Aligned_cols=59 Identities=25% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEE----eCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHL----EGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~----~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+....+.+.++|++++.++.|..+.. .++.+...+.... ...+++|+||+|+|+|.+
T Consensus 69 ~~~~~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~d~lviAtGs~~~ 131 (352)
T PRK12770 69 ERVREGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-------------ELVKKYDAVLIATGTWKS 131 (352)
T ss_pred HHHHHHHHHHHhCCeEEecCcEEeeccccccccccccccccCCHH-------------HHHhhCCEEEEEeCCCCC
Confidence 3444555667777999999988865432 1222222211110 115799999999998744
No 295
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=68.33 E-value=15 Score=34.12 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEE-EEeCCe---EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGG-HLEGNC---MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i-~~~~~~---~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..++..|+ ++.|+++ .+++|++| ...++. +.|...++.. +..-..|.||+|+-...
T Consensus 128 ~qI~~~ll---~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~------------~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 128 WQIFEGLL---EASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSG------------TESDEYDIVVIATPLQQ 187 (368)
T ss_pred HHHHHHHH---HHccCcE-ecceeEEEEeccCCCceeEEEEEecCCC------------CccccCCEEEECCCccc
Confidence 55666665 3468899 68999999 444443 4565544311 11345699999998753
No 296
>PRK06116 glutathione reductase; Validated
Probab=67.93 E-value=14 Score=34.92 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=28.0
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+.+++.|++++.++ ++.+. .. .|++ +|. ++++|+||+|+|..
T Consensus 101 ~~l~~~gv~~~~g~-~~~v~--~~--~v~~-~g~---------------~~~~d~lViATGs~ 142 (450)
T PRK06116 101 NGLENNGVDLIEGF-ARFVD--AH--TVEV-NGE---------------RYTADHILIATGGR 142 (450)
T ss_pred HHHHhCCCEEEEEE-EEEcc--CC--EEEE-CCE---------------EEEeCEEEEecCCC
Confidence 34566799998764 44442 23 3444 441 79999999999975
No 297
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=67.25 E-value=21 Score=33.59 Aligned_cols=46 Identities=11% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
...+.|++++.++. .. .++..+.|+..++ ..++++|+||+|+|+..
T Consensus 85 ~~~~~gV~~~~g~~-~~--~~~~~v~v~~~~~--------------~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 85 MLAGSGVDLYDAEA-HF--VSNKVIEVQAGDE--------------KIELTAETIVINTGAVS 130 (438)
T ss_pred HHHhCCCEEEEEEE-EE--ccCCEEEEeeCCC--------------cEEEEcCEEEEeCCCCC
Confidence 34567888886542 22 2334555554222 12699999999999864
No 298
>PRK14694 putative mercuric reductase; Provisional
Probab=67.24 E-value=16 Score=34.75 Aligned_cols=41 Identities=15% Similarity=0.052 Sum_probs=29.7
Q ss_pred CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
|++++.+ +|+.+. .+.+.|++.+|. ..++++|+||+|+|+.
T Consensus 111 ~v~~~~g-~v~~id--~~~~~V~~~~g~-------------~~~~~~d~lViATGs~ 151 (468)
T PRK14694 111 AITVLNG-EARFVD--ERTLTVTLNDGG-------------EQTVHFDRAFIGTGAR 151 (468)
T ss_pred CeEEEEE-EEEEec--CCEEEEEecCCC-------------eEEEECCEEEEeCCCC
Confidence 7888765 565553 356888887662 1369999999999974
No 299
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=66.62 E-value=7.6 Score=36.89 Aligned_cols=39 Identities=8% Similarity=0.066 Sum_probs=26.1
Q ss_pred CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+|++++.++.+.. +...|++.+|. ++++|+||+|+|...
T Consensus 105 ~gv~~~~g~~~~~-----~~~~V~~~~g~---------------~~~~d~lIiATGs~p 143 (452)
T TIGR03452 105 PNIDVYDGHARFV-----GPRTLRTGDGE---------------EITGDQIVIAAGSRP 143 (452)
T ss_pred CCeEEEEEEEEEe-----cCCEEEECCCc---------------EEEeCEEEEEECCCC
Confidence 5787776654422 23345555552 699999999999753
No 300
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=66.55 E-value=23 Score=34.03 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=29.6
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
..++..|++++.+... + ...+.+.|+..+|. ..++++|+||+|+|.-
T Consensus 108 ~~~~~~~v~~i~G~a~--f-~~~~~v~v~~~~g~-------------~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 108 VALREKKVNYENAYAE--F-VDKHRIKATNKKGK-------------EKIYSAERFLIATGER 154 (484)
T ss_pred HHHhhCCcEEEEEEEE--E-cCCCEEEEeccCCC-------------ceEEEeCEEEEecCCC
Confidence 3456678888765332 2 22345666544441 1369999999999973
No 301
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=66.54 E-value=21 Score=32.55 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE---EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN---VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~---V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
..+...+.+..+.+|++++.++++.+++..++... +.+.++. .+.+|.++++.|...+..
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------------~~~~d~~~~~~g~~p~~~ 240 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGE---------------EIKADLVIIGPGERPNVV 240 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCc---------------EEEeeEEEEeecccccHH
Confidence 45777788888999999999999999987655433 4555552 799999999999988433
No 302
>PRK12831 putative oxidoreductase; Provisional
Probab=66.50 E-value=23 Score=33.77 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHHCCcEEEcCceeEEEEEe-CCeEE-EEec---------CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 52 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+.+++.|++|++++.++.+... ++.+. |++. +|. .+.+...+.++.+.||.||+|.|.-.+.
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr----~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGR----RRPVEIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCC----ccceecCCceEEEECCEEEECCCCCCCh
Confidence 3467789999999998888653 34432 3321 221 0111123445679999999999976543
No 303
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=66.46 E-value=22 Score=33.61 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=30.0
Q ss_pred HHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 54 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 54 a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+++.|++++.+..+ .+ ..+.+.|.+.+|. .++++|+||+|+|...
T Consensus 99 ~~~~~v~~~~g~~~-~~--~~~~~~v~~~~g~--------------~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 99 LKKNKVTVIKGEAK-FL--DPGTVLVTGENGE--------------ETLTAKNIIIATGSRP 143 (461)
T ss_pred HHhCCCEEEEEEEE-Ec--cCCEEEEecCCCc--------------EEEEeCEEEEcCCCCC
Confidence 45668888865432 22 3456777766541 2799999999999743
No 304
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.43 E-value=19 Score=35.88 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=39.6
Q ss_pred HHHHCCcEEEcCceeEEEEEe-CCeEE-EE---ecCCc---ccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 53 EAENHGTTFSNNTSVIGGHLE-GNCMN-VY---ISESK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~---t~~g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+++.|++|++++.++++..+ ++.+. |+ +..+. +| .|+.....+.++.+.||.||+|.|.-.
T Consensus 498 ~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g-~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 498 NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDG-RRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCC-CccceecCCceEEEECCEEEECcCCCC
Confidence 467789999999999898754 34442 32 22110 01 123333445667899999999999654
No 305
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=65.90 E-value=21 Score=33.33 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
|+..+....++++|++..+.-- + ...+.+.|...+|. ++.++|+.+|+|+|.....
T Consensus 132 Lt~gi~~lfkknkV~~~kG~gs--f-~~p~~V~v~k~dg~-------------~~ii~aKnIiiATGSeV~~ 187 (506)
T KOG1335|consen 132 LTGGIENLFKKNKVTYVKGFGS--F-LDPNKVSVKKIDGE-------------DQIIKAKNIIIATGSEVTP 187 (506)
T ss_pred HhhHHHHHhhhcCeEEEeeeEe--e-cCCceEEEeccCCC-------------ceEEeeeeEEEEeCCccCC
Confidence 3344444456666666654321 1 22346777777773 4689999999999975443
No 306
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=65.45 E-value=27 Score=34.91 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEE---ecCCccccc--CCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVY---ISESKNLRN--WDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~---t~~g~~~~~--~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+.+.|++|++++.+.++..+++++.++ ...+...++ .+.+...+.++.+.+|.||+|.|.-.+
T Consensus 369 ~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 369 EEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred HHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence 44556799999999988887666554322 221110000 011122344567999999999997544
No 307
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=65.31 E-value=8 Score=40.45 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
-|..++....+.+++.|++|++++.+- ..|++++.. ...+|.||+|+|++.+.
T Consensus 354 lp~~vi~~~i~~l~~~Gv~f~~n~~vG--------~dit~~~l~---------------~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 354 LPNQLIDDVVEKIKLLGGRFVKNFVVG--------KTATLEDLK---------------AAGFWKIFVGTGAGLPT 406 (944)
T ss_pred ChHHHHHHHHHHHHhhcCeEEEeEEec--------cEEeHHHhc---------------cccCCEEEEeCCCCCCC
Confidence 367788888888899999999886551 124444441 45789999999998554
No 308
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.52 E-value=22 Score=33.96 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=32.3
Q ss_pred EEEcCceeEEEEEe--CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 60 TFSNNTSVIGGHLE--GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 60 ~~~~~~~V~~i~~~--~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..+.+++++++... +..+.+.+.+|. ...||.+|+|||.-.+.
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~---------------~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGP---------------SEIADIIVLATGHSAPP 166 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCC---------------eeeeeEEEEeccCCCCC
Confidence 34457788888877 456778888884 67899999999875544
No 309
>PTZ00367 squalene epoxidase; Provisional
Probab=63.46 E-value=21 Score=35.05 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHH---HHCCcEEEcCceeEEEEEeCCe-------EEEEecCCccc--ccCC------CCCCCCCceeEec
Q 023079 43 SHSLMLSLVGEA---ENHGTTFSNNTSVIGGHLEGNC-------MNVYISESKNL--RNWD------GVSPLQPELTLIP 104 (287)
Q Consensus 43 p~~l~~~l~~~a---~~~Gv~~~~~~~V~~i~~~~~~-------~~V~t~~g~~~--~~~~------~~~~~~~~~~i~a 104 (287)
=..+...|.+.+ ...++++++ ..|+++..+++. +.+++.++... +... .....+...+++|
T Consensus 130 rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~A 208 (567)
T PTZ00367 130 FGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATA 208 (567)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEe
Confidence 345667777666 345899975 478887654332 33333331000 0000 0000011237999
Q ss_pred CEEEEcCCCCchHHHHHh
Q 023079 105 KLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 105 ~~VV~aaG~~s~~l~~~~ 122 (287)
|.||.|=|.+|.- -+.+
T Consensus 209 dLvVgADG~~S~v-R~~l 225 (567)
T PTZ00367 209 PLVVMCDGGMSKF-KSRY 225 (567)
T ss_pred CEEEECCCcchHH-HHHc
Confidence 9999999998654 3444
No 310
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=63.22 E-value=24 Score=37.21 Aligned_cols=63 Identities=14% Similarity=0.019 Sum_probs=42.1
Q ss_pred HHHHHHHHHHCCcEEEcCceeEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 47 MLSLVGEAENHGTTFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 47 ~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
...+.+.++++|++++.++.|+.+..++. .+.+...++. ..++.||.|+++.|.-.+ +|...+
T Consensus 354 ~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~-------------~~~i~~D~V~va~G~~Pnt~L~~~l 419 (985)
T TIGR01372 354 SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGA-------------GQRLEADALAVSGGWTPVVHLFSQR 419 (985)
T ss_pred hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCc-------------eEEEECCEEEEcCCcCchhHHHHhc
Confidence 34566677889999999999988865433 2333321221 137999999999997654 345544
No 311
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=62.64 E-value=11 Score=35.13 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=49.4
Q ss_pred ceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 38 SGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+-..+-.++++.|.+.|... +|++.++ .|.++.++++.+. |+..+..+ ++.+..|-..|+|-|.+|
T Consensus 141 GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~k~g-----------ee~~~~ApLTvVCDGcfS 208 (509)
T KOG1298|consen 141 GRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEG-----------EEVEAFAPLTVVCDGCFS 208 (509)
T ss_pred cceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEecCCC-----------ceEEEecceEEEecchhH
Confidence 33556679999999887754 8999875 5777777666442 55443321 246789999999999998
Q ss_pred hHHH
Q 023079 116 PALA 119 (287)
Q Consensus 116 ~~l~ 119 (287)
+.--
T Consensus 209 nlRr 212 (509)
T KOG1298|consen 209 NLRR 212 (509)
T ss_pred HHHH
Confidence 7643
No 312
>PLN02546 glutathione reductase
Probab=62.34 E-value=20 Score=35.22 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
..+.+.+++.|++++.+ +++.+.. +. |+. +|. ++++|+||+|+|...
T Consensus 182 ~~~~~~l~~~gV~~i~G-~a~~vd~--~~--V~v-~G~---------------~~~~D~LVIATGs~p 228 (558)
T PLN02546 182 GIYKNILKNAGVTLIEG-RGKIVDP--HT--VDV-DGK---------------LYTARNILIAVGGRP 228 (558)
T ss_pred HHHHHHHHhCCcEEEEe-EEEEccC--CE--EEE-CCE---------------EEECCEEEEeCCCCC
Confidence 33444566789999865 3333322 23 333 341 799999999999753
No 313
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=61.83 E-value=26 Score=33.49 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=30.1
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++++|++++.+... +. .++.+.|... + ..+++|+++|+|||....
T Consensus 102 ~l~~~~~V~vi~G~a~--f~-~~~~v~V~~~-~--------------~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 102 GLLKKNGVDVIRGEAR--FV-DPHTVEVTGE-D--------------KETITADNIIIATGSRPR 148 (454)
T ss_pred HHHhhCCCEEEEEEEE--EC-CCCEEEEcCC-C--------------ceEEEeCEEEEcCCCCCc
Confidence 3456678888765321 21 2456667655 2 138999999999997533
No 314
>PTZ00058 glutathione reductase; Provisional
Probab=61.79 E-value=27 Score=34.27 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=12.7
Q ss_pred eEecCEEEEcCCCC
Q 023079 101 TLIPKLVVNSAGLS 114 (287)
Q Consensus 101 ~i~a~~VV~aaG~~ 114 (287)
++++|+||+|+|..
T Consensus 200 ~i~ad~lVIATGS~ 213 (561)
T PTZ00058 200 VIEGKNILIAVGNK 213 (561)
T ss_pred EEECCEEEEecCCC
Confidence 79999999999964
No 315
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=61.71 E-value=5.1 Score=38.06 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+..++....+.++++|++|+.++.+ + ..|++++. ...+|.||+|+|++.+.
T Consensus 182 ~~~~~~~~~~~l~~~gv~~~~~~~v------~--~~v~~~~~----------------~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 182 PKEIVVTEIKTLKKLGVTFRMNFLV------G--KTATLEEL----------------FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCCcc------C--CcCCHHHH----------------HhhCCEEEEeCCCCCCC
Confidence 3455666667778899999988754 1 12444433 45689999999986544
No 316
>PRK13984 putative oxidoreductase; Provisional
Probab=61.51 E-value=27 Score=34.51 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHCCcEEEcCceeEEEEEeCCeEE-EEecCC-----cccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 53 EAENHGTTFSNNTSVIGGHLEGNCMN-VYISES-----KNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~-V~t~~g-----~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+.+.|++|++++.++.+..+++++. |+..+. .+|+ |......+.+..+.+|.||+|.|.-.
T Consensus 471 ~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~-~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 471 EGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGR-FNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCC-ccceecCCceEEEECCEEEEeeCCCC
Confidence 34568999999988888765555442 332210 0000 11111123446899999999999764
No 317
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=61.20 E-value=7.3 Score=37.00 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+..++..+.+.+++.|++|+.++.+.. .++..+. .+.+|+||+|+|++...
T Consensus 189 ~~~~~~~~~~~l~~~gv~~~~~~~v~~--------~v~~~~~----------------~~~~d~vvlAtGa~~~~ 239 (457)
T PRK11749 189 PKDIVDREVERLLKLGVEIRTNTEVGR--------DITLDEL----------------RAGYDAVFIGTGAGLPR 239 (457)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEECC--------ccCHHHH----------------HhhCCEEEEccCCCCCC
Confidence 456777777788889999998877621 1222333 47799999999997543
No 318
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=60.83 E-value=32 Score=36.30 Aligned_cols=73 Identities=16% Similarity=0.055 Sum_probs=41.0
Q ss_pred ecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++..+...+.+++.+. +++++.++.|.++... +.+ .+...... .+........+...++++++||+|+|+.-
T Consensus 212 ~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~-~~v~~v~~~~~~-~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 212 KPAADWAAATVAELTAMPEVTLLPRTTAFGYYDH-NTVGALERVTDH-LDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred ccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecC-CeEEEEEEeeec-cccccCCccccceEEEEcCEEEEcCCCCC
Confidence 35667777787777766 5999999999887542 222 12111000 00000000001123689999999999853
No 319
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=60.73 E-value=38 Score=32.31 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHCCcEEEcCceeEEEEEe-CCeEE-EEe---cCCc---ccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 51 VGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYI---SESK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 51 ~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t---~~g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++.+++.|++|++++.++.+..+ ++.+. |+. ..+. +|. .+.....+++..+.+|.||+|.|.-.+
T Consensus 327 ~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~-~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 327 VANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGR-RRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCC-ccceecCCceEEEECCEEEECCcCCCC
Confidence 34567889999999999888654 33332 322 1110 000 001112344568999999999996543
No 320
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=59.97 E-value=34 Score=33.46 Aligned_cols=60 Identities=22% Similarity=0.114 Sum_probs=38.2
Q ss_pred HHHHHHCCcEEEcCceeEEEEEeCCe-EE-----EEe----cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 51 VGEAENHGTTFSNNTSVIGGHLEGNC-MN-----VYI----SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 51 ~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~-----V~t----~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++.+.+.|++|++++.+..+..++++ .. ++. ++| . ++ ...+.++.+.+|.||.|.|.-.+
T Consensus 312 ~~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g---~-~~--~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 312 IEEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDG---R-PS--PVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCC---C-ee--ecCCceEEEECCEEEECcCCCCc
Confidence 34566789999999999888765433 22 211 122 0 00 01345678999999999996553
No 321
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=59.50 E-value=35 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=39.7
Q ss_pred HHHHHCCcEEEcCceeEEEEEe-CCeEE-EEec---------CCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 52 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+.+++.|++|++++.+..+... ++.+. |++. +|. ++.....+.++.+.||.||+|.|.-.+.
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~----~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGR----RRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCC----CCceecCCCeEEEECCEEEECcCCCCCc
Confidence 4567889999999988888654 34432 3331 221 1112233455689999999999976554
No 322
>PRK14727 putative mercuric reductase; Provisional
Probab=59.37 E-value=26 Score=33.45 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.4
Q ss_pred CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
|++++.+. + .+ .+.+.+.|++.+|. ..++++|+||+|+|+.
T Consensus 121 ~v~~i~G~-a-~f-~~~~~v~v~~~~g~-------------~~~~~~d~lViATGs~ 161 (479)
T PRK14727 121 ALTLLKGY-A-RF-KDGNTLVVRLHDGG-------------ERVLAADRCLIATGST 161 (479)
T ss_pred CeEEEEEE-E-EE-ecCCEEEEEeCCCc-------------eEEEEeCEEEEecCCC
Confidence 77776543 1 12 23456788876661 1369999999999974
No 323
>PRK07846 mycothione reductase; Reviewed
Probab=58.37 E-value=17 Score=34.51 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.7
Q ss_pred eEecCEEEEcCCCC
Q 023079 101 TLIPKLVVNSAGLS 114 (287)
Q Consensus 101 ~i~a~~VV~aaG~~ 114 (287)
++++|+||+|+|..
T Consensus 126 ~~~~d~lViATGs~ 139 (451)
T PRK07846 126 EITADQVVIAAGSR 139 (451)
T ss_pred EEEeCEEEEcCCCC
Confidence 79999999999964
No 324
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=57.98 E-value=66 Score=31.01 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeC--C-e-E-EEE-ecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEG--N-C-M-NVY-ISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~--~-~-~-~V~-t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~~s~ 116 (287)
..++.=|.+.++++||.|+++++|+++..+. + + + .+. ..+|.. .+..+ .-|.|++..|.-+.
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~-----------~~i~l~~~DlV~vT~GS~t~ 275 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKE-----------ETIDLGPDDLVFVTNGSMTE 275 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCe-----------eEEEeCCCCEEEEECCcccc
Confidence 4667778889999999999999999998752 2 2 2 233 344421 12233 56777777775443
No 325
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=56.54 E-value=20 Score=33.05 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=40.2
Q ss_pred HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
..-+.++.++++|..+.+-.+++.|.-.+|. .-++|.||+|+- +++-+.++
T Consensus 228 a~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~---------------s~rFD~vViAth--~dqAl~mL 278 (447)
T COG2907 228 ADIRGRIETRTPVCRLRRLPDGVVLVNADGE---------------SRRFDAVVIATH--PDQALALL 278 (447)
T ss_pred ccccceeecCCceeeeeeCCCceEEecCCCC---------------ccccceeeeecC--hHHHHHhc
Confidence 4445679999999999998888888777783 678999999975 46666666
No 326
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=56.42 E-value=13 Score=37.39 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 48 LSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 48 ~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
..|.+..++.|.+|+.+..++.+..++.-..|+.++|. .+.||.||.|+|.-=+.
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~---------------~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGT---------------EIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCC---------------cccceeEEEeccccccc
Confidence 34556678889999998887777664333468999994 79999999999976443
No 327
>PRK06370 mercuric reductase; Validated
Probab=56.10 E-value=30 Score=32.84 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=27.6
Q ss_pred HHHHHC-CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 52 GEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 52 ~~a~~~-Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
...++. |++++.++.+. ..++.+.+ ++. ++++|+||+|+|+..
T Consensus 102 ~~~~~~~gv~v~~g~~~~---~~~~~v~v---~~~---------------~~~~d~lViATGs~p 145 (463)
T PRK06370 102 QWLRGLEGVDVFRGHARF---ESPNTVRV---GGE---------------TLRAKRIFINTGARA 145 (463)
T ss_pred HHHhcCCCcEEEEEEEEE---ccCCEEEE---CcE---------------EEEeCEEEEcCCCCC
Confidence 344555 89998776542 22233333 231 799999999999753
No 328
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=55.63 E-value=56 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=26.9
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY 80 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~ 80 (287)
..|..+..+|.+.|.+.|+..+ .+++....++.|.++
T Consensus 15 ~s~~d~~~~la~kAd~~GA~~y---~I~~~~~~~~~~~~t 51 (56)
T PF07338_consen 15 GSPDDAEEALAKKADEKGAKYY---RITSASEDGNNWHAT 51 (56)
T ss_dssp SSHHHHHHHHHHHHHHTT-SEE---EEEEEEECSSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEEEEcCCCeEEEE
Confidence 6899999999999999999876 455555445556543
No 329
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=54.06 E-value=41 Score=32.38 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=29.0
Q ss_pred HHH-CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 54 AEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 54 a~~-~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
+++ .|++++.+.. ...+.+.+.|....+.++ ....++++|+||+|+|...
T Consensus 113 l~~~~gv~~i~G~a---~f~~~~~v~V~~~~~~~~---------~~~~~~~~d~lIIATGs~p 163 (486)
T TIGR01423 113 FADTEGLTFFLGWG---ALEDKNVVLVRESADPKS---------AVKERLQAEHILLATGSWP 163 (486)
T ss_pred hhcCCCeEEEEEEE---EEccCCEEEEeeccCCCC---------CcceEEECCEEEEecCCCC
Confidence 444 4899887642 223345566754221000 0013799999999999863
No 330
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=53.38 E-value=39 Score=31.79 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=29.4
Q ss_pred CCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 57 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 57 ~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.|++++.+ ++..+ ..+.+.|.+.++. .++++|+||+|+|+..
T Consensus 90 ~gv~~~~g-~~~~i--~~~~~~v~~~~g~--------------~~~~~d~lviATGs~p 131 (441)
T PRK08010 90 PNIDVIDG-QAEFI--NNHSLRVHRPEGN--------------LEIHGEKIFINTGAQT 131 (441)
T ss_pred CCcEEEEE-EEEEe--cCCEEEEEeCCCe--------------EEEEeCEEEEcCCCcC
Confidence 48888764 44443 2356778877661 2599999999999854
No 331
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=53.25 E-value=8.8 Score=40.45 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
.|..++....+.+++.|++|++++.+ +..+.+.+... ...+|.||+|+|++.+.
T Consensus 478 l~~e~~~~~~~~l~~~Gv~~~~~~~v------g~~~~~~~l~~----------------~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 478 LPRDIIDREVQRLVDIGVKIETNKVI------GKTFTVPQLMN----------------DKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCcc------CCccCHHHHhh----------------ccCCCEEEEecCCCCCC
Confidence 36678888888899999999988654 11222221111 24589999999998644
No 332
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=53.10 E-value=21 Score=35.05 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=46.0
Q ss_pred eecHHHHHHHHHHHHHH-CCcEEEcCceeEEEEEeCCe-E-EEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 40 IVDSHSLMLSLVGEAEN-HGTTFSNNTSVIGGHLEGNC-M-NVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 40 ~vdp~~l~~~l~~~a~~-~Gv~~~~~~~V~~i~~~~~~-~-~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
.--...++..|.+++.+ ++.+++.+..++++..++++ + .|. ...| +-+.++|+.||+|+|.
T Consensus 134 ~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g-------------~~~~~~akavilaTGG 200 (562)
T COG1053 134 DKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTG-------------ELYVFRAKAVILATGG 200 (562)
T ss_pred CCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCC-------------cEEEEecCcEEEccCC
Confidence 33456788889988887 67889999999999866443 3 232 3333 2357899999999998
Q ss_pred Cc
Q 023079 114 SA 115 (287)
Q Consensus 114 ~s 115 (287)
..
T Consensus 201 ~g 202 (562)
T COG1053 201 AG 202 (562)
T ss_pred ce
Confidence 87
No 333
>PRK12831 putative oxidoreductase; Provisional
Probab=51.94 E-value=13 Score=35.59 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 46 LMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 46 l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
++....+.++++|++|+.++.|. .. |..++.. ..+.+|.||+|+|++.+
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~------~~--v~~~~~~--------------~~~~~d~viiAtGa~~~ 241 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVG------KT--VTIDELL--------------EEEGFDAVFIGSGAGLP 241 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEC------Cc--CCHHHHH--------------hccCCCEEEEeCCCCCC
Confidence 56666677888999999988652 11 2222220 14679999999999643
No 334
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=50.97 E-value=64 Score=30.64 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=20.7
Q ss_pred CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 74 GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 74 ~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+.+.|.+.+|. ..++++|+||+|+|+..
T Consensus 119 ~~~v~v~~~~g~-------------~~~~~~d~lViATGs~p 147 (466)
T PRK07818 119 ANTLEVDLNDGG-------------TETVTFDNAIIATGSST 147 (466)
T ss_pred CCEEEEEecCCC-------------eeEEEcCEEEEeCCCCC
Confidence 345677665551 13699999999999864
No 335
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=50.90 E-value=66 Score=30.70 Aligned_cols=32 Identities=22% Similarity=0.058 Sum_probs=24.5
Q ss_pred CCCCeEEEeCC--CCchhhhhHHHHHHHHHHHhC
Q 023079 256 GVPGLVNLFGI--ESPGLTSSMAIAEYVAAKFLR 287 (287)
Q Consensus 256 ~~~~l~~~~G~--~g~G~t~ap~~g~~va~~i~~ 287 (287)
.++|||++.+. .|+|+..+...|+.+|+.|++
T Consensus 457 ~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 457 PVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhh
Confidence 47899866432 356899888899999998864
No 336
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=50.07 E-value=31 Score=32.86 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=36.8
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
..-++.|.+++.+++|+.++.... +|.+.+|. ++.-+++++|+|.
T Consensus 135 e~Yke~gIe~~~~t~v~~~D~~~K--~l~~~~Ge---------------~~kys~LilATGs 179 (478)
T KOG1336|consen 135 EFYKEKGIELILGTSVVKADLASK--TLVLGNGE---------------TLKYSKLIIATGS 179 (478)
T ss_pred hhHhhcCceEEEcceeEEeecccc--EEEeCCCc---------------eeecceEEEeecC
Confidence 335778999999999999987554 36677773 8999999999999
No 337
>PTZ00052 thioredoxin reductase; Provisional
Probab=49.05 E-value=22 Score=34.30 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.3
Q ss_pred eEecCEEEEcCCCCc
Q 023079 101 TLIPKLVVNSAGLSA 115 (287)
Q Consensus 101 ~i~a~~VV~aaG~~s 115 (287)
.+++|+||+|+|+..
T Consensus 142 ~i~~d~lIIATGs~p 156 (499)
T PTZ00052 142 TITAKYILIATGGRP 156 (499)
T ss_pred EEECCEEEEecCCCC
Confidence 799999999999853
No 338
>PRK13748 putative mercuric reductase; Provisional
Probab=48.89 E-value=51 Score=32.07 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=28.0
Q ss_pred CcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 58 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
|++++.+ +++.+ +.+.+.|++.+|. ..++++|+||+|+|..
T Consensus 203 ~v~~~~g-~~~~~--~~~~~~v~~~~g~-------------~~~~~~d~lviAtGs~ 243 (561)
T PRK13748 203 AITVLHG-EARFK--DDQTLIVRLNDGG-------------ERVVAFDRCLIATGAS 243 (561)
T ss_pred CeEEEEE-EEEEe--cCCEEEEEeCCCc-------------eEEEEcCEEEEcCCCC
Confidence 7888765 44332 3356777776651 1369999999999974
No 339
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=47.63 E-value=37 Score=35.81 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
|..++....+.+++.|++|+.++.| .+. .++.. ....|+||+|+|++.+
T Consensus 588 p~evL~~die~l~~~GVe~~~gt~V-di~---------le~L~---------------~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 588 PAELIQHDIEFVKAHGVKFEFGCSP-DLT---------VEQLK---------------NEGYDYVVVAIGADKN 636 (1019)
T ss_pred cHHHHHHHHHHHHHcCCEEEeCcee-EEE---------hhhhe---------------eccCCEEEECcCCCCC
Confidence 4556666667778889999998876 221 12221 4558999999999864
No 340
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=47.23 E-value=25 Score=33.75 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=48.8
Q ss_pred eEEcCCceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeC--C--e-E-EEEecCCcccccCCCCCCCCCceeEec
Q 023079 32 ALLSPASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEG--N--C-M-NVYISESKNLRNWDGVSPLQPELTLIP 104 (287)
Q Consensus 32 al~~p~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~--~--~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a 104 (287)
|+|.|.+ ++|=..+-..|.+..... ..+++++ .|.++..++ + + + .|.+.+|. .+.|
T Consensus 113 AVwg~RA-QiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~dgt---------------~v~a 175 (679)
T KOG2311|consen 113 AVWGLRA-QIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVDGT---------------VVYA 175 (679)
T ss_pred cccChHH-hhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEecCc---------------Eecc
Confidence 6777755 888888888888776543 5677654 666765543 2 1 2 48888884 7999
Q ss_pred CEEEEcCCCCch
Q 023079 105 KLVVNSAGLSAP 116 (287)
Q Consensus 105 ~~VV~aaG~~s~ 116 (287)
+.||+.+|-+..
T Consensus 176 ~~VilTTGTFL~ 187 (679)
T KOG2311|consen 176 ESVILTTGTFLR 187 (679)
T ss_pred ceEEEeecccee
Confidence 999999997654
No 341
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=46.37 E-value=15 Score=37.29 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
|..++....+.+++.|++|+.++.| +.. |+.++.. ...+|.||+|+|++.+.
T Consensus 480 p~~~~~~~~~~l~~~gv~~~~~~~v------~~~--v~~~~l~---------------~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 480 PKKIVDVEIENLKKLGVKFETDVIV------GKT--ITIEELE---------------EEGFKGIFIASGAGLPN 531 (752)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEE------CCc--CCHHHHh---------------hcCCCEEEEeCCCCCCC
Confidence 4556666677788899999988754 111 2233221 46689999999997443
No 342
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=43.95 E-value=40 Score=30.71 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=36.9
Q ss_pred HHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 55 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 55 ~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
.+.++.++.+++|+++..+... |.+.+| .+..|++|+|+|++....
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g----------------~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENKV--VLLDDG----------------EIEYDYLVLATGARPRPP 109 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCCE--EEECCC----------------cccccEEEEcCCCcccCC
Confidence 4678999999999999776544 566666 699999999999986653
No 343
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=43.13 E-value=18 Score=34.51 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+..+.....+.+++.|++++.++.|.. . +..++. ...+|.||+|+|++..
T Consensus 190 ~~~~~~~~~~~~~~~Gv~~~~~~~v~~------~--~~~~~~----------------~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 190 DKAVLSRRREIFTAMGIEFHLNCEVGR------D--ISLDDL----------------LEDYDAVFLGVGTYRS 239 (467)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCEeCC------c--cCHHHH----------------HhcCCEEEEEeCCCCC
Confidence 345556666778889999999887621 0 111111 3569999999999874
No 344
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=42.86 E-value=72 Score=30.29 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=45.0
Q ss_pred eeecHHHHHHHHHHHHHH-C-CcEEEcCceeEEEEEeCCeEEE--EecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 39 GIVDSHSLMLSLVGEAEN-H-GTTFSNNTSVIGGHLEGNCMNV--YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 39 g~vdp~~l~~~l~~~a~~-~-Gv~~~~~~~V~~i~~~~~~~~V--~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
|+++-...+.-....+.+ + ++++++ .+...++..++.+.+ .|.++ +..++.|.-|++|+|+|+.
T Consensus 102 GTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~-----------~~~e~~i~YDyLViA~GA~ 169 (491)
T KOG2495|consen 102 GTVELRSIVEPIRAIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADS-----------SDKEFVIGYDYLVIAVGAE 169 (491)
T ss_pred cceeehhhhhhHHHHhhccCCCceEEe-cccEeecccccEEEEeeeccCC-----------CcceeeecccEEEEeccCC
Confidence 455555566555555543 3 566664 577778777776654 34444 2456789999999999998
Q ss_pred chHH
Q 023079 115 APAL 118 (287)
Q Consensus 115 s~~l 118 (287)
..-+
T Consensus 170 ~~TF 173 (491)
T KOG2495|consen 170 PNTF 173 (491)
T ss_pred CCCC
Confidence 7654
No 345
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=41.60 E-value=70 Score=33.74 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=39.8
Q ss_pred HHHHHCCcEEEcCceeEEEEEe-CCeEE-EEecCCc-----ccccCCCC----------CCCCCceeEecCEEEEcCCCC
Q 023079 52 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESK-----NLRNWDGV----------SPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~~g~-----~~~~~~~~----------~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+.|.+.|+.|.+++.-..+..+ ++++. |+...-. ..-.|+.+ .+.+++++|.||.||+|+|--
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 4577889999999987777654 34442 3332110 00124431 233466889999999999954
Q ss_pred c
Q 023079 115 A 115 (287)
Q Consensus 115 s 115 (287)
.
T Consensus 728 ~ 728 (1028)
T PRK06567 728 N 728 (1028)
T ss_pred C
Confidence 3
No 346
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.42 E-value=85 Score=33.03 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHHHCCcEEEcCceeEEEEEeC-C-eEE-EEe---------cCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHH
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEG-N-CMN-VYI---------SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL 118 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~-~-~~~-V~t---------~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l 118 (287)
+.+.+.|++|++++.++.+..++ + .+. |++ .+|. ++ ....+.+..+.||.||+|.|--.+..
T Consensus 492 ~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr----~~-~~~~G~e~~i~aD~VI~AiG~~p~~~ 565 (944)
T PRK12779 492 HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGR----RS-PKPTGEIERVPVDLVIMALGNTANPI 565 (944)
T ss_pred HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCc----ee-eecCCceEEEECCEEEEcCCcCCChh
Confidence 34567899999999888886542 2 332 222 1221 01 11234557899999999999876654
No 347
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=40.98 E-value=1.1e+02 Score=32.55 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHHHHCCcEEEcCceeEEEEEe-CCeEE-EEecC---C---cccccCCCCCCCCCceeEecCEEEEcCCCCchH
Q 023079 52 GEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISE---S---KNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA 117 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~-~~~~~-V~t~~---g---~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~ 117 (287)
+.+++.|++|++++.++.+... ++.+. |+..+ + .+|. ++ ....+.++.+.+|.||+|.|--.+.
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr-~~-~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGR-RK-PMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCC-cc-ccCCCceEEEEcCEEEECCCcCCCh
Confidence 4577889999999988888653 34442 33211 0 0000 11 1123445679999999999976553
No 348
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=40.50 E-value=31 Score=32.99 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=30.9
Q ss_pred EEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 60 TFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 60 ~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
+++.+++|..|...+ +.+.|+.++|. .+.||+||++.-.
T Consensus 245 ~~~~~~rv~~I~~~~~~~v~l~c~dg~---------------v~~adhVIvTvsL 284 (498)
T KOG0685|consen 245 RIHLNTRVENINWKNTGEVKLRCSDGE---------------VFHADHVIVTVSL 284 (498)
T ss_pred hhcccccceeeccCCCCcEEEEEeCCc---------------EEeccEEEEEeec
Confidence 345568999998775 56889999993 7999999998654
No 349
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=39.50 E-value=20 Score=35.84 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 42 DSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 42 dp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
.|..++....+.+.+.|++++.++.+ +. .++..+. ...+|.||+|+|++..
T Consensus 241 ~~~~~~~~~~~~l~~~Gv~i~~~~~v-~~-------dv~~~~~----------------~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 241 LPESVIDADIAPLRAMGAEFRFNTVF-GR-------DITLEEL----------------QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeCCcc-cC-------ccCHHHH----------------HhhcCEEEEEcCCCCC
Confidence 35566677777788899999888754 11 1222222 3458999999999754
No 350
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.41 E-value=65 Score=34.10 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEE---e----cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVY---I----SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~---t----~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+.+.+.|++|+.++.+..+..+ +.+.+. . .+|. +.....++..++.+|.||+|.|.-.+
T Consensus 715 e~AleeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr-----~~~v~tg~~~~I~aD~VIvAIG~~Pn 780 (1019)
T PRK09853 715 EEALEDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGR-----RRPVETGETVTLEADTVITAIGEQVD 780 (1019)
T ss_pred HHHHHcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCc-----eEEeeCCCeEEEEeCEEEECCCCcCC
Confidence 3455679999999888888532 333211 1 1120 00011233468999999999998654
No 351
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=39.10 E-value=59 Score=30.80 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=26.6
Q ss_pred HHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 53 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 53 ~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.+++.|++++.++ +..+ +.. .|++.+|. ..+++|+||+|+|..
T Consensus 97 ~l~~~gv~~~~g~-~~~~--~~~--~v~v~~g~--------------~~~~~~~lIiATGs~ 139 (463)
T TIGR02053 97 VLSSYGVDYLRGR-ARFK--DPK--TVKVDLGR--------------EVRGAKRFLIATGAR 139 (463)
T ss_pred HHHhCCcEEEEEE-EEEc--cCC--EEEEcCCe--------------EEEEeCEEEEcCCCC
Confidence 3566789888654 3222 222 34444441 168999999999975
No 352
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=38.55 E-value=1.1e+02 Score=28.26 Aligned_cols=70 Identities=20% Similarity=0.257 Sum_probs=42.2
Q ss_pred CceeecHHHHHHHHHHHHHHC-CcEEEcCceeEEEEEeCCeEE-EE-----ecCCcccccCCCCCCC---CCceeEecCE
Q 023079 37 ASGIVDSHSLMLSLVGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY-----ISESKNLRNWDGVSPL---QPELTLIPKL 106 (287)
Q Consensus 37 ~~g~vdp~~l~~~l~~~a~~~-Gv~~~~~~~V~~i~~~~~~~~-V~-----t~~g~~~~~~~~~~~~---~~~~~i~a~~ 106 (287)
.-|.++|. ++.+ +++++. -++|.+..+|..+..+++.++ |+ .++-. |++..+ .-.++++|..
T Consensus 148 GPgvl~pF--vr~~-re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~-----RG~~SSR~~~GdFef~A~a 219 (552)
T COG3573 148 GPGVLEPF--VRRL-REAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVE-----RGQPSSREVVGDFEFSASA 219 (552)
T ss_pred CcchhhHH--HHHH-HHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccc-----cCCCccceeecceEEeeee
Confidence 44455553 3444 444444 589999999999999988653 32 11110 111111 1237899999
Q ss_pred EEEcCCCC
Q 023079 107 VVNSAGLS 114 (287)
Q Consensus 107 VV~aaG~~ 114 (287)
||+++|.-
T Consensus 220 viv~SGGI 227 (552)
T COG3573 220 VIVASGGI 227 (552)
T ss_pred EEEecCCc
Confidence 99998864
No 353
>PRK13984 putative oxidoreductase; Provisional
Probab=37.31 E-value=23 Score=34.94 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+..++....+.+++.|++++.++.|.. + +..+.. ...+|.||+|+|++.+
T Consensus 332 ~~~~~~~~~~~~~~~gv~~~~~~~v~~-----~---~~~~~~----------------~~~yD~vilAtGa~~~ 381 (604)
T PRK13984 332 PDEALDKDIAFIEALGVKIHLNTRVGK-----D---IPLEEL----------------REKHDAVFLSTGFTLG 381 (604)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEeCC-----c---CCHHHH----------------HhcCCEEEEEcCcCCC
Confidence 455666666778889999999887731 0 111212 4679999999998753
No 354
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=37.08 E-value=1.1e+02 Score=32.48 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHCCcEEEcCceeEEEEEeCCeEEEEe----cCCcccccCCCCCCCCCceeEecCEEEEcCCCCch-HHHHHh
Q 023079 52 GEAENHGTTFSNNTSVIGGHLEGNCMNVYI----SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF 122 (287)
Q Consensus 52 ~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t----~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~-~l~~~~ 122 (287)
+.+.+.|++|++++.+..+. ++.+.+.. ....++. +.....+++.++.||.||+|.|.-.+ .+++.+
T Consensus 713 ~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr--~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~ 784 (1012)
T TIGR03315 713 EEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGR--RRPVGTGETVDLPADTVIAAVGEQVDTDLLQKN 784 (1012)
T ss_pred HHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCc--eeeecCCCeEEEEeCEEEEecCCcCChHHHHhc
Confidence 34456799999888887776 34433221 0000000 00112345568999999999997643 344444
No 355
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.93 E-value=98 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.062 Sum_probs=38.3
Q ss_pred HHHHHHHCCcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 50 LVGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 50 l~~~a~~~Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
+.+..+..|++++.++.++.+...+++ ..+.+..+. .-.+|.++-|.|--
T Consensus 236 v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~---------------i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 236 VTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGT---------------IEDVDTLLWAIGRK 286 (478)
T ss_pred HHHHhhhcceeecccccceeeeecCCCceEEEEeccc---------------cccccEEEEEecCC
Confidence 345667789999999999999887665 556676661 34599999999964
No 356
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=36.81 E-value=27 Score=33.52 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 45 SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 45 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.+.....+.++++|++++.++.|. .. +. .+. ..+.+|.||+|+|++.
T Consensus 194 ~~~~~~~~~~~~~Gv~~~~~~~v~-~~-------~~-~~~---------------~~~~~d~VilAtGa~~ 240 (485)
T TIGR01317 194 AIVDRRIDLLSAEGIDFVTNTEIG-VD-------IS-ADE---------------LKEQFDAVVLAGGATK 240 (485)
T ss_pred HHHHHHHHHHHhCCCEEECCCEeC-Cc-------cC-HHH---------------HHhhCCEEEEccCCCC
Confidence 345555567788999999988773 11 11 111 1467999999999984
No 357
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.35 E-value=27 Score=26.81 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=36.7
Q ss_pred ceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 38 SGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 38 ~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.|..+-+....+|-+.|.++|+.+. ++..|. ++. .-|... .-.||.||+|+..-.
T Consensus 12 tGIAHTyMAAeaLe~~A~~~g~~IK-------VETqGs~G~eN~LT~ed----------------I~~Ad~VI~AaD~~i 68 (122)
T COG1445 12 TGIAHTYMAAEALEKAAKKLGVEIK-------VETQGAVGIENRLTAED----------------IAAADVVILAADIEV 68 (122)
T ss_pred chHHHHHHHHHHHHHHHHHcCCeEE-------EEcCCcccccCcCCHHH----------------HHhCCEEEEEecccc
Confidence 3477778888889899999998875 444432 221 223322 568999999987643
No 358
>PRK09929 hypothetical protein; Provisional
Probab=33.06 E-value=1.9e+02 Score=21.02 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=31.1
Q ss_pred eeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEE
Q 023079 13 RMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFS 62 (287)
Q Consensus 13 ~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~ 62 (287)
+.++.+++....-.+...|-+... +...|..+...|.+.|.+.|+..+
T Consensus 23 ~~i~~~qa~~~~~~l~kiGtVSvs--~~~s~~d~~~~La~KAd~~GA~yY 70 (91)
T PRK09929 23 ELMTKAEFEKVESQYEKIGTISTS--NEMSTADAKEDLIKKADEKGADVL 70 (91)
T ss_pred hhhCHHHhhhhhcccceeEEEEEc--CCCCHHHHHHHHHHHHHHcCCCEE
Confidence 344555543322234444545443 345899999999999999999875
No 359
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.68 E-value=1.1e+02 Score=28.77 Aligned_cols=49 Identities=10% Similarity=0.097 Sum_probs=34.2
Q ss_pred cEEEcCceeEEEEEeC-C-eEE--EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC--CchHHHHHh
Q 023079 59 TTFSNNTSVIGGHLEG-N-CMN--VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL--SAPALAKRF 122 (287)
Q Consensus 59 v~~~~~~~V~~i~~~~-~-~~~--V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~--~s~~l~~~~ 122 (287)
-.++++++|++|...+ + ... |.|.++. .++|+.||+.+|. |.+...+.+
T Consensus 112 ~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~---------------~y~ar~lVlg~G~~P~IP~~f~~l 166 (436)
T COG3486 112 PSLRFGEEVTDISSLDGDAVVRLFVVTANGT---------------VYRARNLVLGVGTQPYIPPCFRSL 166 (436)
T ss_pred CccccCCeeccccccCCcceeEEEEEcCCCc---------------EEEeeeEEEccCCCcCCChHHhCc
Confidence 6677889999885443 2 233 6677662 8999999999984 566555544
No 360
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=32.21 E-value=1.1e+02 Score=29.25 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCCeEEEeCC--CCchhhhhHHHHHHHHHHHhC
Q 023079 256 GVPGLVNLFGI--ESPGLTSSMAIAEYVAAKFLR 287 (287)
Q Consensus 256 ~~~~l~~~~G~--~g~G~t~ap~~g~~va~~i~~ 287 (287)
.++|||++.+. .|.|+..+...|+.+|+.|++
T Consensus 457 ~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 457 AIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 47899866433 356899888999999998763
No 361
>PLN02852 ferredoxin-NADP+ reductase
Probab=29.83 E-value=59 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+..++..+.+.+...|++|+.+..|- . .|+.++- ....|.||+|+|++..
T Consensus 78 ~k~v~~~~~~~~~~~~v~~~~nv~vg------~--dvtl~~L----------------~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 78 TKNVTNQFSRVATDDRVSFFGNVTLG------R--DVSLSEL----------------RDLYHVVVLAYGAESD 127 (491)
T ss_pred hHHHHHHHHHHHHHCCeEEEcCEEEC------c--cccHHHH----------------hhhCCEEEEecCCCCC
Confidence 34455566666677899998876551 1 1333333 3468999999999864
No 362
>KOG3434 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]
Probab=29.72 E-value=1.7e+02 Score=22.60 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=28.1
Q ss_pred CCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEE
Q 023079 36 PASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVY 80 (287)
Q Consensus 36 p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~ 80 (287)
-+||++||..+-+-|.+..+-+|..=-.+. |+.++..+..+.|.
T Consensus 28 ~eDgI~d~A~fe~fLqerIKv~GK~gnLg~-vv~ie~~kskitV~ 71 (125)
T KOG3434|consen 28 VEDGILDIADLEKFLQERIKVNGKVGNLGN-VVTIERSKSKITVV 71 (125)
T ss_pred cccccccHHHHHHHHHHHhhhcccccccCC-eEEEecCCcEEEEE
Confidence 478999999999998888777664322233 44454444344443
No 363
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=29.68 E-value=58 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=21.7
Q ss_pred CceeecHHHHHHHHHHHHHHCCcEEE
Q 023079 37 ASGIVDSHSLMLSLVGEAENHGTTFS 62 (287)
Q Consensus 37 ~~g~vdp~~l~~~l~~~a~~~Gv~~~ 62 (287)
-.|..+.+....+|.++|++.|.++.
T Consensus 7 p~G~Aht~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 7 PTGIAHTFMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEE
Confidence 45677888888999999999998875
No 364
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=29.47 E-value=1.2e+02 Score=27.61 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=35.3
Q ss_pred HHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEc
Q 023079 20 AMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSN 63 (287)
Q Consensus 20 i~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~ 63 (287)
++++.|+.+..|-+|.|++ -|+..++..+.+.|++.|.++.+
T Consensus 152 ik~~~Pnak~Igv~Y~p~E--~ns~~l~eelk~~A~~~Gl~vve 193 (322)
T COG2984 152 IKALLPNAKSIGVLYNPGE--ANSVSLVEELKKEARKAGLEVVE 193 (322)
T ss_pred HHHhCCCCeeEEEEeCCCC--cccHHHHHHHHHHHHHCCCEEEE
Confidence 4568898887788888765 68889999999999999999875
No 365
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=29.38 E-value=84 Score=29.54 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=41.3
Q ss_pred ecHHHHHHHHHHHHHHC-CcEEEcCc----eeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 41 VDSHSLMLSLVGEAENH-GTTFSNNT----SVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~-Gv~~~~~~----~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
++-..+.+.++..|... -++|+.++ .+..++..+....|++++|. ++++|.+|=|=|+||
T Consensus 99 ~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~---------------~~~~dlligCDGa~S 163 (420)
T KOG2614|consen 99 INRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGT---------------TVKGDLLIGCDGAYS 163 (420)
T ss_pred HHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCc---------------EEEeeEEEEcCchHH
Confidence 34555666666666543 34555422 33334444444567888884 899999999999997
Q ss_pred hHHHHHh
Q 023079 116 PALAKRF 122 (287)
Q Consensus 116 ~~l~~~~ 122 (287)
.- .+-+
T Consensus 164 ~V-r~~l 169 (420)
T KOG2614|consen 164 KV-RKWL 169 (420)
T ss_pred HH-HHHh
Confidence 54 3444
No 366
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=29.06 E-value=38 Score=32.32 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
+..++....+.+.+.|++++.++.|.. . +.. +. ....+|.||+|+|++..
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~~~~v~~-~-------~~~-~~---------------~~~~~d~vvlAtGa~~~ 241 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRTNVEVGK-D-------ITA-EE---------------LLAEYDAVFLGTGAYKP 241 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCCEECC-c-------CCH-HH---------------HHhhCCEEEEecCCCCC
Confidence 445666666778889999998876621 0 111 11 13578999999999844
No 367
>PLN02852 ferredoxin-NADP+ reductase
Probab=27.72 E-value=3.8e+02 Score=25.91 Aligned_cols=59 Identities=14% Similarity=-0.054 Sum_probs=34.0
Q ss_pred CCcEEEcCceeEEEEEe--C-CeEE-EEecCCc---c-cccCCCCCCCCCceeEecCEEEEcCCCCc
Q 023079 57 HGTTFSNNTSVIGGHLE--G-NCMN-VYISESK---N-LRNWDGVSPLQPELTLIPKLVVNSAGLSA 115 (287)
Q Consensus 57 ~Gv~~~~~~~V~~i~~~--~-~~~~-V~t~~g~---~-~~~~~~~~~~~~~~~i~a~~VV~aaG~~s 115 (287)
.++.|++...-+.|... + +++. |++.... . ........+.+++..|.+|.||.|-|.-+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 47888888877777632 2 3442 4332110 0 00011223456678899999999999754
No 368
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=27.64 E-value=3.5e+02 Score=25.83 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHHHhhCCCcc--cceeEEcCCceeecHH--HHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCC
Q 023079 17 GFEAMKMEPELQ--CVKALLSPASGIVDSH--SLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDG 92 (287)
Q Consensus 17 ~~ei~~~~P~l~--~~~al~~p~~g~vdp~--~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~ 92 (287)
.+++++++|.+. +.--+....+..+|-. +++.-..+...+.|+.+..++.|..+.. ..+.+.+.+|.
T Consensus 242 ~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~--~~I~~~~~~g~------- 312 (491)
T KOG2495|consen 242 PEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTE--KTIHAKTKDGE------- 312 (491)
T ss_pred HHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecC--cEEEEEcCCCc-------
Confidence 467889999885 3333444445455522 2222222334566999999999977643 45666666662
Q ss_pred CCCCCCceeEecCEEEEcCCCCchHHHHHh
Q 023079 93 VSPLQPELTLIPKLVVNSAGLSAPALAKRF 122 (287)
Q Consensus 93 ~~~~~~~~~i~a~~VV~aaG~~s~~l~~~~ 122 (287)
...|.-..+|=|+|..+..+.+.+
T Consensus 313 ------~~~iPYG~lVWatG~~~rp~~k~l 336 (491)
T KOG2495|consen 313 ------IEEIPYGLLVWATGNGPRPVIKDL 336 (491)
T ss_pred ------eeeecceEEEecCCCCCchhhhhH
Confidence 247888999999999988887766
No 369
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=26.38 E-value=60 Score=31.39 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=51.7
Q ss_pred CHHHHHhhCCCccc---ceeEEcCCceeecHHHHHHHHHHHHH-HCCcEEEcCceeEEEEEe-CCeEEEEecCCcccccC
Q 023079 16 EGFEAMKMEPELQC---VKALLSPASGIVDSHSLMLSLVGEAE-NHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNW 90 (287)
Q Consensus 16 ~~~ei~~~~P~l~~---~~al~~p~~g~vdp~~l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~ 90 (287)
.+..+++++|...+ .--+..+ .+.-.-+....+ +.|++|..+ ++..+... ++...|+.++..
T Consensus 390 qA~~Ike~~Pd~~v~I~YmDiRaf-------G~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~V~~EdTl----- 456 (622)
T COG1148 390 QAQLIKERYPDTDVTIYYMDIRAF-------GKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLIVRVEDTL----- 456 (622)
T ss_pred hhhhhhhcCCCcceeEEEEEeecc-------CccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeEEEEEecc-----
Confidence 45667888887641 1111111 112233444455 679998765 55556554 445566655543
Q ss_pred CCCCCCCCceeEecCEEEEcCCCCc----hHHHHHh
Q 023079 91 DGVSPLQPELTLIPKLVVNSAGLSA----PALAKRF 122 (287)
Q Consensus 91 ~~~~~~~~~~~i~a~~VV~aaG~~s----~~l~~~~ 122 (287)
.+...++.+|.||+++|.-- .++.+.+
T Consensus 457 -----~g~~~e~~~DLVVLa~Gmep~~g~~kia~iL 487 (622)
T COG1148 457 -----TGEVKEIEADLVVLATGMEPSEGAKKIAKIL 487 (622)
T ss_pred -----CccceecccceEEEeeccccCcchHHHHHhc
Confidence 23356899999999999753 3555555
No 370
>PHA02754 hypothetical protein; Provisional
Probab=26.15 E-value=2e+02 Score=19.01 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCC
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES 84 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g 84 (287)
.++++.+...+...|+-+. ++..+...|+++.|.|+++
T Consensus 17 ke~MRelkD~LSe~GiYi~---RIkai~~SGdkIVVi~aD~ 54 (67)
T PHA02754 17 KEAMRELKDILSEAGIYID---RIKAITTSGDKIVVITADA 54 (67)
T ss_pred HHHHHHHHHHHhhCceEEE---EEEEEEecCCEEEEEEcce
Confidence 4566666666777787664 5666777888888888887
No 371
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=25.97 E-value=2.2e+02 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=13.3
Q ss_pred eEecCEEEEcCCCCc
Q 023079 101 TLIPKLVVNSAGLSA 115 (287)
Q Consensus 101 ~i~a~~VV~aaG~~s 115 (287)
++++|+||+|+|...
T Consensus 272 ~i~ad~lIIATGS~P 286 (659)
T PTZ00153 272 EFKVKNIIIATGSTP 286 (659)
T ss_pred EEECCEEEEcCCCCC
Confidence 799999999999754
No 372
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.94 E-value=2.1e+02 Score=27.90 Aligned_cols=49 Identities=8% Similarity=-0.058 Sum_probs=30.7
Q ss_pred HCCcEEEcCceeEEEEEeCCeEEEE---ecCCcccccCCCCCCCCCceeE--ecCE----EEEcCCCCchH
Q 023079 56 NHGTTFSNNTSVIGGHLEGNCMNVY---ISESKNLRNWDGVSPLQPELTL--IPKL----VVNSAGLSAPA 117 (287)
Q Consensus 56 ~~Gv~~~~~~~V~~i~~~~~~~~V~---t~~g~~~~~~~~~~~~~~~~~i--~a~~----VV~aaG~~s~~ 117 (287)
+.|++++.++.|+++..++....+. +.+|. +.++ .+|. ||+|+|.-.+.
T Consensus 191 ~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~-------------~~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 191 HPKIEVKFNTELKEATGDDGLRYAKFVNNVTGE-------------ITEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred CCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCC-------------EEEEeccccccceEEEEEeCCCCCh
Confidence 3599999999999987543211222 22341 2233 3666 99999987554
No 373
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.26 E-value=1.4e+02 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=32.7
Q ss_pred CcEEEcCceeEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 023079 58 GTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL 113 (287)
Q Consensus 58 Gv~~~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~ 113 (287)
|..++.+..|..+...++. +.|+++.+. .+.+|+||+++-.
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~---------------~~~~d~vvvt~pl 269 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGD---------------GYEADAVVVTVPL 269 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCC---------------eeEeeEEEEEccH
Confidence 8999999999999987665 455555552 5999999999765
No 374
>COG1397 DraG ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=1.1e+02 Score=27.57 Aligned_cols=57 Identities=25% Similarity=0.131 Sum_probs=42.1
Q ss_pred chhcCCCeeeeeCHHHHHhhCCCcc--cc--eeEEcCCceeecHHHHHHHHHHHHHHCCcEE
Q 023079 4 GTANGVHGLRMLEGFEAMKMEPELQ--CV--KALLSPASGIVDSHSLMLSLVGEAENHGTTF 61 (287)
Q Consensus 4 ~~~~g~~~~~~L~~~ei~~~~P~l~--~~--~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~ 61 (287)
+.+.|.| +|++++++|++++-... .. .+.+...+=+.|...++..|++...+.+...
T Consensus 18 GDAlG~p-vE~~t~e~Ik~~yG~~d~~~~~p~~~~~~~g~~TDDT~~~~~Lae~lle~~~~~ 78 (314)
T COG1397 18 GDALGMP-VEFLTREEIKALYGEVDGTFPPPAAGGFNAGEWTDDTSLALCLAESLLEGGGLD 78 (314)
T ss_pred HHHhCCC-ccccCHHHHHHHhCcccccccCcccccCCCCCccCcHHHHHHHHHHHHhcCCcC
Confidence 6788998 99999999999876443 11 2344445558888999999998887765543
No 375
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=22.72 E-value=1.9e+02 Score=20.14 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=26.1
Q ss_pred CCCcc-cceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEc
Q 023079 24 EPELQ-CVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSN 63 (287)
Q Consensus 24 ~P~l~-~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~ 63 (287)
.|++. +.-++.+ ..+. ||...+..|.+.|+++|++-.-
T Consensus 9 i~G~ei~yl~iv~-~~~~-d~d~Al~eM~e~A~~lGAnAVV 47 (74)
T TIGR03884 9 IPGLQLYYLGIVS-TESD-NVDEIVENLREKVKAKGGMGLI 47 (74)
T ss_pred CCCeEEEEEEEEE-EecC-CHHHHHHHHHHHHHHcCCCEEE
Confidence 46665 3334444 2222 9999999999999999986543
No 376
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.58 E-value=60 Score=32.46 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++....+.+++.|++|+.++.|.. . +...+. ...+|.||+|+|++..
T Consensus 377 ~~~~~~~~~~~~~~Gv~~~~~~~v~~------~--i~~~~~----------------~~~~DavilAtGa~~~ 425 (654)
T PRK12769 377 KSLLARRREIFSAMGIEFELNCEVGK------D--ISLESL----------------LEDYDAVFVGVGTYRS 425 (654)
T ss_pred HHHHHHHHHHHHHCCeEEECCCEeCC------c--CCHHHH----------------HhcCCEEEEeCCCCCC
Confidence 44555556677888999999886621 1 111111 3468999999999754
No 377
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=3.6e+02 Score=24.20 Aligned_cols=56 Identities=20% Similarity=0.030 Sum_probs=38.7
Q ss_pred HHHHHHHHHC-CcEEEcCceeEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 48 LSLVGEAENH-GTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 48 ~~l~~~a~~~-Gv~~~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..+++.++++ ++.+++++++..+.-++ .+ |+..+.. +.+..+.++-|+++.|.--+
T Consensus 182 ~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~~--v~l~~~~-----------~~~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 182 EILVERLKKNVKIEVLTNTVVKEILGDDVEG--VVLKNVK-----------GEEKELPVDGVFIAIGHLPN 239 (305)
T ss_pred HHHHHHHHhcCCeEEEeCCceeEEecCccce--EEEEecC-----------CceEEEEeceEEEecCCCCc
Confidence 4555666766 89999999999887655 23 3333321 12347999999999998655
No 378
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=3.6e+02 Score=25.51 Aligned_cols=62 Identities=15% Similarity=-0.004 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEe-CCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCchHHHHH
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLE-GNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR 121 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~~l~~~ 121 (287)
..+.+++++.+.-.|+++..|.++..+... ++. +.|+..++ ...++ =|+|-+.+.++-.+.
T Consensus 232 gEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~----------------v~~~k-~vi~dpSY~~~~~k~ 294 (440)
T KOG1439|consen 232 GELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE----------------VAKCK-KVICDPSYFPQKVKK 294 (440)
T ss_pred chhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc----------------eeecc-eEEecCccchHHHHh
Confidence 488999999988899999999999999874 433 34554444 55666 566778888776666
Q ss_pred h
Q 023079 122 F 122 (287)
Q Consensus 122 ~ 122 (287)
+
T Consensus 295 v 295 (440)
T KOG1439|consen 295 V 295 (440)
T ss_pred h
Confidence 6
No 379
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=21.32 E-value=1.7e+02 Score=27.60 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=13.3
Q ss_pred eEecCEEEEcCCCC
Q 023079 101 TLIPKLVVNSAGLS 114 (287)
Q Consensus 101 ~i~a~~VV~aaG~~ 114 (287)
++++|+||+|+|..
T Consensus 128 ~~~~d~lIiATGs~ 141 (460)
T PRK06292 128 RIEAKNIVIATGSR 141 (460)
T ss_pred EEEeCEEEEeCCCC
Confidence 79999999999987
No 380
>PRK10259 hypothetical protein; Provisional
Probab=21.30 E-value=3.2e+02 Score=19.63 Aligned_cols=34 Identities=18% Similarity=0.169 Sum_probs=25.7
Q ss_pred ecHHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEE
Q 023079 41 VDSHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMN 78 (287)
Q Consensus 41 vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~ 78 (287)
-+|..+...|.+.|.+.|+..+ ++++. +.++.|.
T Consensus 46 ~s~~d~~~~La~KAd~~GA~~Y---rIi~a-~~~n~~~ 79 (86)
T PRK10259 46 STLDALEAKLAEKAAAAGASGY---SITSA-TNNNKLS 79 (86)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEEe-cCCCcEE
Confidence 3799999999999999999865 46665 3335554
No 381
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=21.24 E-value=2.8e+02 Score=20.75 Aligned_cols=50 Identities=8% Similarity=0.038 Sum_probs=33.1
Q ss_pred eeeCHHHHHhhCCCcccceeEEcCCceeecHHHHHHHHHHHHHHCCcEEEcCceeEEEE
Q 023079 13 RMLEGFEAMKMEPELQCVKALLSPASGIVDSHSLMLSLVGEAENHGTTFSNNTSVIGGH 71 (287)
Q Consensus 13 ~~L~~~ei~~~~P~l~~~~al~~p~~g~vdp~~l~~~l~~~a~~~Gv~~~~~~~V~~i~ 71 (287)
+.+++++.. .+...|-+... +.-+|..+.+.|.+.|.+.|++.+ +|++..
T Consensus 38 ~eI~~~qa~----~lq~iGtVSvs--~~gsp~d~~~~La~KAda~GA~yY---rIi~~~ 87 (104)
T PRK14864 38 QEIRRAQTQ----GLQKMGTVSAL--VRGSPDDAEREIQAKANAAGADYY---VIVMVD 87 (104)
T ss_pred eecCHHHhh----CCceeeEEEEe--cCCCHHHHHHHHHHHHHHcCCCEE---EEEEcc
Confidence 445555542 23334434432 355899999999999999999876 566663
No 382
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=21.00 E-value=93 Score=29.71 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=12.9
Q ss_pred eEecCEEEEcCCCCc
Q 023079 101 TLIPKLVVNSAGLSA 115 (287)
Q Consensus 101 ~i~a~~VV~aaG~~s 115 (287)
.+.+|.||.|+|.--
T Consensus 274 ~~~~D~Ii~~TGy~~ 288 (461)
T PLN02172 274 VVYADTIVHCTGYKY 288 (461)
T ss_pred CccCCEEEECCcCCc
Confidence 688999999999853
No 383
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.95 E-value=94 Score=28.97 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 023079 43 SHSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 110 (287)
Q Consensus 43 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a 110 (287)
+..+.+.+++.+.-.|+++..+.++..+....+--.|..... +..|.+||..
T Consensus 228 l~El~QGFaRssav~GgtymLn~~i~ein~tk~v~~v~~~~~----------------~~ka~KiI~~ 279 (434)
T COG5044 228 LGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVDKGSL----------------TQKAGKIISS 279 (434)
T ss_pred chhhhHHHHHhhhccCceeecCcchhhhccccceeeeecCcc----------------eeecCcccCC
Confidence 789999999999999999999999988876554112333333 7788887754
No 384
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=20.42 E-value=3.1e+02 Score=26.28 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=31.8
Q ss_pred HCCcE-EEcCceeEEEEEeC-CeEE-EEe--------cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 023079 56 NHGTT-FSNNTSVIGGHLEG-NCMN-VYI--------SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS 114 (287)
Q Consensus 56 ~~Gv~-~~~~~~V~~i~~~~-~~~~-V~t--------~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~ 114 (287)
.+|++ +++.+.+..+..++ +.+. |++ ++|. ++.+...+..+++.+|.||+|.|.-
T Consensus 348 ~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr----~~p~~~~g~~~~i~~D~Vi~AiG~~ 413 (485)
T TIGR01317 348 HYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGK----WQFVEIPGSEEVFEADLVLLAMGFV 413 (485)
T ss_pred hcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCC----ccceecCCceEEEECCEEEEccCcC
Confidence 35654 34566777776543 3442 332 1231 2223334556689999999999964
No 385
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.21 E-value=41 Score=20.32 Aligned_cols=21 Identities=10% Similarity=0.513 Sum_probs=15.8
Q ss_pred HHHHHHHhhhCCCCCCCCccc
Q 023079 208 ERFYPEIRKYYPDLRDGSLQP 228 (287)
Q Consensus 208 ~~~~~~~~~~~P~l~~~~i~~ 228 (287)
+..++.+++.||++....|..
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~ 23 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKA 23 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHH
Confidence 456788899999998766543
No 386
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=20.12 E-value=70 Score=31.92 Aligned_cols=49 Identities=14% Similarity=0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCcEEEcCceeEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCch
Q 023079 44 HSLMLSLVGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP 116 (287)
Q Consensus 44 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~~s~ 116 (287)
..++....+.+++.|++|+.+++|.. . +...+. ....|.||+|+|++..
T Consensus 360 ~~~~~~~~~~~~~~Gv~~~~~~~v~~------~--~~~~~l----------------~~~~DaV~latGa~~~ 408 (639)
T PRK12809 360 KTVLSQRREIFTAMGIDFHLNCEIGR------D--ITFSDL----------------TSEYDAVFIGVGTYGM 408 (639)
T ss_pred HHHHHHHHHHHHHCCeEEEcCCccCC------c--CCHHHH----------------HhcCCEEEEeCCCCCC
Confidence 34445555667888999998887621 0 111112 3468999999999754
Done!