BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023080
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V +++QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 117/209 (55%), Gaps = 24/209 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLL 255
EE V +RL V +++QP+ +FY +G L+
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYLV 193
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V +++QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V +++QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V +++QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT A ++ G+PHI+TGD+ R +++G LV
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
DE+ ++ +RL ++GF+LDGFPRTV QAE LE ++ +D V+++ + +D
Sbjct: 61 DEVTIGIVRERLSKDDC--QNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA--HCMSKLITRADDTE 227
VL+E+ GRR+C CG +++ I P P C +L RADD E
Sbjct: 119 VLMERLTGRRICRNCGATYHL-------------IFHPPAKPGVCDKCGGELYQRADDNE 165
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRGKL 254
V RL V ++ +P+ +FY +G L
Sbjct: 166 ATVANRLEVNMKQMKPLVDFYEQKGYL 192
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 116/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V +++QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQTQPLLDFYSEKGYL 192
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 115/208 (55%), Gaps = 24/208 (11%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKL 254
EE V +RL V ++ QP+ +FY +G L
Sbjct: 165 EETVSKRLEVNMKQIQPLLDFYSEKGYL 192
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 24/224 (10%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
+ V +G PG GKGT R+ + G+PHI+TGD+ R +++G+LV
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCED 169
DE+ ++ +RL G+ E GF+LDGFPRTV QAE LEE+++ ID V+N+++ +D
Sbjct: 61 DEVTIGIVKERL--GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKD 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDT 226
VL+E+ GRR+CS CG +++ P P C +L RADD
Sbjct: 119 VLMERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDN 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
EE V +RL V +++ P+ +FY +G L+ + I + + L
Sbjct: 165 EETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADL 208
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 114/205 (55%), Gaps = 18/205 (8%)
Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
+ ++ V LG PG GKGT A RL++ V H+ATGD++R ++ GKL
Sbjct: 15 KGIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLC 167
VSDE++ L+ K LE ++GF+LDGFPRTV+QAE+L+++M+ +D V+ +
Sbjct: 75 VSDEMVVELIEKNLETPLC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 132
Query: 168 EDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTE 227
+ +L+ + GR + + G +++ N I+ P LI R+DD E
Sbjct: 133 DSLLIRRITGRLIHPKSGRSYH-EEFNPPKEPMKDDITGEP----------LIRRSDDNE 181
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRG 252
+ +K RL+ Y+ ++ P+ E+YR RG
Sbjct: 182 KALKIRLQAYHTQTTPLIEYYRKRG 206
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 112/205 (54%), Gaps = 18/205 (8%)
Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
+ V+ V LG PG GKGT A +L+K V H+ATGD++R ++ GKL
Sbjct: 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKL 74
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLC 167
VSDE++ L+ K LE ++GF+LDGFPRTV+QAE+L+++M+ +D V+ +
Sbjct: 75 VSDEMVLELIEKNLETPPC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP 132
Query: 168 EDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTE 227
+ +L+ + GR + Q G +++ N I+ P LI R+DD +
Sbjct: 133 DSLLIRRITGRLIHPQSGRSYH-EEFNPPKEPMKDDITGEP----------LIRRSDDNK 181
Query: 228 EVVKERLRVYNEKSQPVEEFYRNRG 252
+ +K RL Y+ ++ P+ E+Y RG
Sbjct: 182 KALKIRLEAYHTQTTPLVEYYSKRG 206
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 28/223 (12%)
Query: 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDE 116
VFLG PG GKGT A RL+K G HI+TGD++R + +G+LV D+
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVL 171
+I L+ + I DGFPRTVKQAE L+E+++ +D V+ ++ ++V+
Sbjct: 63 LIIALIEEVFPK-----HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVV 117
Query: 172 LEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
+E+ GRR+ + G ++V NP PP K+I R DD EV+K
Sbjct: 118 IERLSGRRINPETGEVYHVKY--------NPP-------PPG---VKVIQREDDKPEVIK 159
Query: 232 ERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
+RL VY E++ P+ E+Y+ +G L D + E + ++LE +
Sbjct: 160 KRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVI 202
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 112/206 (54%), Gaps = 24/206 (11%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
V +G PG GKGT A R+ + G+PHI+TGD+ R +++G+LV DE+
Sbjct: 4 VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDVLL 172
++ +RL E GF+LDGFPRTV QAE LEE+++ ID V+N+++ ++ L+
Sbjct: 64 TIGIVRERLSKSDC--ERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELM 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC---MSKLITRADDTEEV 229
E+ GRR+CS CG +++ P P C +L RADD EE
Sbjct: 122 ERLTGRRICSVCGTTYHLV--------------FNPPKTPGICDKDGGELYQRADDNEET 167
Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLL 255
V +RL V +++ P+ FY ++ L+
Sbjct: 168 VTKRLEVNMKQTAPLLAFYDSKEVLV 193
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 30/212 (14%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
V +G PG GKGT A ++ + +PHI+TGD+ R ++QG LV DE+
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
++ +RL + GF+LDGFPRTV QA+ L+ ++ +D V+N+K+ ++ L+
Sbjct: 64 TIGIVHERLSKDDC--QKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELM 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA------HCMSKLITRADDT 226
++ GR +C CG ++ PPA +L R DD
Sbjct: 122 KRLTGRWICKTCGATYHTI-----------------FNPPAVEGICDKDGGELYQRIDDK 164
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
E VK RL V +++QP+ +FY +G L + D
Sbjct: 165 PETVKNRLDVNMKQTQPLLDFYSQKGVLKDID 196
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 112/210 (53%), Gaps = 22/210 (10%)
Query: 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSD 115
+++FLG PG GKGT + L K H++TGDL+R I+N+GKLV D
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCEDV 170
+++ +L+ ++L+ Q + GFILDG+PR VKQAE L +++ +D V + ++V
Sbjct: 91 QMVLSLVDEKLKTPQC--KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEV 148
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSK--LITRADDTEE 228
L+ + GR + G ++ I P +P ++ LI R DD E+
Sbjct: 149 LVNRISGRLIHKPSGRIYH-------------KIFNPPKVPFRDDVTNEPLIQREDDNED 195
Query: 229 VVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258
V+K+RL V+ ++ P+ +Y+N+ L+ D
Sbjct: 196 VLKKRLTVFKSETSPLISYYKNKNLLINLD 225
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
++ + LG PG GKGT A + + G+P I+TGD++R I++ GKLV+
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
DE++ L+ +R+ Q +GF+LDGFPRT+ QA+ ++E +++D V+ + ++++++
Sbjct: 61 DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
+ +GRR+ + G ++V N G ++ +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
L Y++ + P+ +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 32/225 (14%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
V +G PG GKGT A R+ + G PHI+TGD+ R ++QG LV DE+
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLL 172
++ +RL ++GF+LDGFPRTV QAE L++++ I+ V+N+++ ++ L+
Sbjct: 64 TIGIVRERLSKSDC--DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELI 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSK-------LITRADD 225
+ GRR+C CG ++++ L P K L RADD
Sbjct: 122 ARLTGRRICKVCGTSYHL------------------LFNPPQVEGKCDKDGGELYQRADD 163
Query: 226 TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
+ V RL V ++ P+ FY ++ L+ + I + + L
Sbjct: 164 NPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDL 208
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
R ++ +G PG GKGT +SR++K + H+++GDL+R ++QGKL
Sbjct: 5 RLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKL 64
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
+ D+++ L+ L+ + ++LDGFPRT+ QAE L+ ID V+NL + +V+
Sbjct: 65 IPDDVMTRLVLHELKNLT---QYNWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 121
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
++ R + G +N+ N G ++ P L+ R DD E V +
Sbjct: 122 QRLTARWIHPGSGRVYNI-EFNPPKTMGIDDLTGEP----------LVQREDDRPETVVK 170
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEF 257
RL+ Y +++PV E+YR +G L F
Sbjct: 171 RLKAYEAQTEPVLEYYRKKGVLETF 195
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 110/197 (55%), Gaps = 18/197 (9%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
++ + LG PG GKGT A + + G+P I+TGD++R I++ GKLV+
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
DE++ L+ +R+ Q +GF+LDGFPRT+ QA+ ++E +++D V+ + ++++++
Sbjct: 61 DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVA--NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK 231
+ +GRR+ + G ++V V+G + +L TR DD EE V+
Sbjct: 119 RIVGRRVHAPSGRVYHVKFNPPKVEGKDDGTG-------------EELTTRKDDQEETVR 165
Query: 232 ERLRVYNEKSQPVEEFY 248
+RL Y++ + P+ +Y
Sbjct: 166 KRLVEYHQMTAPLIGYY 182
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 31/233 (13%)
Query: 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
+++ V +G PG GKGT A L + H+ATGD++R I++QG LV
Sbjct: 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
SD+I+ N++ L A ++GFILDGFPRT+ QAE L++++ ++ + LK+ +
Sbjct: 64 SDDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
++L+ + GR + G +++ + N PP M L+
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
R+DD + +K+RL Y+ +++P+ +FY+ G D W +L L
Sbjct: 165 RSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKL 112
R ++ V +G PG GKGT +SR++ + H+++GDL+R ++QGKL
Sbjct: 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKL 65
Query: 113 VSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLL 172
+ D+++ L L+ + ++LDGFPRT+ QAE L+ ID V+NL + +V+
Sbjct: 66 IPDDVMTRLALHELKNLT---QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIK 122
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
++ R + G +N+ N G ++ P LI R DD E V +
Sbjct: 123 QRLTARWIHPASGRVYNI-EFNPPKTVGIDDLTGEP----------LIQREDDKPETVIK 171
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEF 257
RL+ Y ++++PV E+Y+ +G L F
Sbjct: 172 RLKAYEDQTKPVLEYYQKKGVLETF 196
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 31/233 (13%)
Query: 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
+++ V +G PG GKGT A L + H+ATGD++R I++QG LV
Sbjct: 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
SD+I+ N++ L A ++GFILDGFPRT+ QAE L++++ ++ + LK+ +
Sbjct: 64 SDDIMVNMIKDELTNNPA-CKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
++L+ + GR + G +++ + N PP M L+
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
R+DD + +K+RL Y+ +++P+ +FY+ G D W L L
Sbjct: 165 RSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADFLNKL 217
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
++ + LG P GKGT A + + G+P I+TGD++R I++ GKLV+
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
DE++ L+ +R+ Q +GF+LDGFPRT+ QA+ ++E +++D V+ + ++++++
Sbjct: 61 DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
+ +GRR+ + G ++V N G ++ +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
L Y++ + P+ +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 51/230 (22%)
Query: 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQ 109
P+ +++ + LG PG GKGT A +L++ LG+P I+TG+L R ++
Sbjct: 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDA 75
Query: 110 GKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNL 164
G LV ++ L+ RL A +GFILDG+PR+V+QA+ L E++ DID V+
Sbjct: 76 GDLVPSDLTNELVDDRLNNPDAA--NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF 133
Query: 165 KLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD 224
++ E+VLLE+ GR RAD
Sbjct: 134 RVSEEVLLERLKGR------------------------------------------GRAD 151
Query: 225 DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
DT++V+ R++VY +++ P+ E+YR+ +L D G + E + + L AL
Sbjct: 152 DTDDVILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRAL 199
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 14/194 (7%)
Query: 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSD 115
+ + LG PG GKGT A+ + + G+P I+TGD +R ++GKLV D
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEK 174
+I L+ +RL+ +A +G++ DGFPRT+ QA+ +E + ID V+ + + ++E+
Sbjct: 70 SLIIGLVKERLK--EADCANGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIER 127
Query: 175 CLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERL 234
GRR G ++V N G ++ P L+ R DD EE VK+RL
Sbjct: 128 XSGRRTHPASGRTYHV-KFNPPKVEGKDDVTGEP----------LVQRDDDKEETVKKRL 176
Query: 235 RVYNEKSQPVEEFY 248
VY +++P+ +Y
Sbjct: 177 DVYEAQTKPLITYY 190
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 110/225 (48%), Gaps = 51/225 (22%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
++ + LG PG GKGT A +L++ LG+P I+TG+L R ++ G LV
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCED 169
++ L+ RL A +GFILDG+PR+V+QA+ L E++ DID V+ ++ E+
Sbjct: 61 SDLTNELVDDRLNNPDAA--NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 170 VLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEV 229
VLLE+ GR RADDT++V
Sbjct: 119 VLLERLKGR------------------------------------------GRADDTDDV 136
Query: 230 VKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
+ R++VY +++ P+ E+YR+ +L D G + E + + L AL
Sbjct: 137 ILNRMKVYRDETAPLLEYYRD--QLKTVDAVGTMDEVFARALRAL 179
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 108/195 (55%), Gaps = 14/195 (7%)
Query: 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVS 114
++ + LG GKGT A + + G+P I+TGD++R I++ GKLV+
Sbjct: 1 MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 115 DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLE 173
DE++ L+ +R+ Q +GF+LDGFPRT+ QA+ ++E +++D V+ + ++++++
Sbjct: 61 DELVIALVKERI--AQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVD 118
Query: 174 KCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKER 233
+ +GRR+ + G ++V N G ++ +L TR DD EE V++R
Sbjct: 119 RIVGRRVHAPSGRVYHV-KFNPPKVEGKDDVT----------GEELTTRKDDQEETVRKR 167
Query: 234 LRVYNEKSQPVEEFY 248
L Y++ + P+ +Y
Sbjct: 168 LVEYHQMTAPLIGYY 182
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
+++ V +G PG GKGT A L + H+ATGD++R I++QG LV
Sbjct: 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLV 63
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-----IDLVVNLKLCE 168
SD+I+ N++ L A ++GFIL GFPRT+ QAE L++++ ++ + LK+ +
Sbjct: 64 SDDIMVNMIKDELTNNPA-CKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 169 DVLLEKCLGRRMCSQCGGNFN-VANINVKGGNGNPSISMAPLLPPAHCMSK------LIT 221
++L+ + GR + G +++ + N PP M L+
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFN------------------PPKEDMKDDVTGEALVQ 164
Query: 222 RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
+DD + +K+RL Y+ +++P+ +FY+ G D W +L L
Sbjct: 165 ISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL 217
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
V LG PG GKGT R+++ G+ H+++G +R + + LV D +
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
I L+ LE + ++LDGFPRT+ QAE L+++ ++DLV++L + + L ++ L
Sbjct: 91 ITRLMMSELENRRG---QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LS 146
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
RR G + N +G ++ P L+ + DD E V RLR Y
Sbjct: 147 RRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP----------LVQQEDDKPEAVAARLRQY 196
Query: 238 NEKSQPVEEFYRNRGKLLEF 257
+ ++PV E Y++RG L +F
Sbjct: 197 KDVAKPVIELYKSRGVLHQF 216
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
V LG PG GKGT R+++ G+ H+++G +R + + LV D +
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
I L+ LE + ++LDGFPRT+ QAE L+++ ++DLV++L + + L ++ L
Sbjct: 69 ITRLMMSELENRRG---QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDR-LS 124
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
RR G + N +G ++ P L+ + DD E V R R Y
Sbjct: 125 RRWIHPPSGRVYNLDFNPPHVHGIDDVTGEP----------LVQQEDDKPEAVAARPRQY 174
Query: 238 NEKSQPVEEFYRNRGKLLEF 257
+ ++PV E Y++RG L +F
Sbjct: 175 KDVAKPVIELYKSRGVLHQF 194
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 18/202 (8%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
+ +G PG GKGT + K G+ H++TGD++R I+ G V DEI
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAE----ILEEVMD-IDLVVNLKLCEDVLL 172
+ L+ ++ + G +GF+LDGFPRT+ QAE IL E+ D + V+ ++ + ++
Sbjct: 69 VLGLVKEKFDLGVC--VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
E+ GR G ++V N G ++ P L+ R DD E VK
Sbjct: 127 ERISGRCTHPASGRIYHV-KYNPPKQPGIDDVTGEP----------LVWRDDDNAEAVKV 175
Query: 233 RLRVYNEKSQPVEEFYRNRGKL 254
RL V+++++ P+ +FY + G L
Sbjct: 176 RLDVFHKQTAPLVKFYEDLGIL 197
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 40/219 (18%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
+FLG PG GKGT ASRL++ LG ++TGD++R I+ +G LV D++
Sbjct: 8 IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDL 67
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177
I L+ + L I DGFPRT+ QAE L+
Sbjct: 68 ILELIREEL-------AERVIFDGFPRTLAQAEALD------------------------ 96
Query: 178 RRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVY 237
R+ S+ G G + L+ ++L R+DD EE V+ RL VY
Sbjct: 97 -RLLSETGTRLL--------GVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVY 147
Query: 238 NEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276
EK++P+ +Y RG L D G E + ++ AL +
Sbjct: 148 REKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALGI 186
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 21/193 (10%)
Query: 61 GCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIFN 120
G P GKGT + + HI+ GDL+R + +G+LV DEI+ N
Sbjct: 12 GAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 71
Query: 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRR 179
++ +RL A E+G++LDG+PR+ QA LE + + D + L + +++L+E+ +GRR
Sbjct: 72 MVKERLRQPDA-QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRR 130
Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH--CMSKLITRADDTEEVVKERLRVY 237
+ G +++ PP + S+L R DDTEE VK RL Y
Sbjct: 131 LDPVTGKIYHLK-----------------YSPPENEEIASRLTQRFDDTEEKVKLRLETY 173
Query: 238 NEKSQPVEEFYRN 250
+ + + Y N
Sbjct: 174 YQNIESLLSTYEN 186
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 51/231 (22%)
Query: 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQG 110
K N+ +V +G PG GKGT ++ + G H++TGDL+R I+ +G
Sbjct: 7 KKTNIIFV-VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKG 65
Query: 111 KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDV 170
+LV E + ++L + A + GF++DG+PR V+Q E E
Sbjct: 66 QLVPLETVLDMLRDAMVA-KVNTSKGFLIDGYPREVQQGEEFE----------------- 107
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA------D 224
RR+ G P++ + P +L+ R D
Sbjct: 108 -------RRI-------------------GQPTLLLYVDAGPETMTQRLLKRGETSGRVD 141
Query: 225 DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
D EE +K+RL Y + ++PV FY RG + + + G + + ++ L+
Sbjct: 142 DNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 38/216 (17%)
Query: 60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIF 119
+G PG GKGT ++ + G H++TGDL+R I+ +G+LV E +
Sbjct: 15 VGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVL 74
Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179
++L + A + GF++DG+PR VKQ E E K+ + LL
Sbjct: 75 DMLRDAMVA-KVDTSKGFLIDGYPREVKQGEEFER----------KIGQPTLL------- 116
Query: 180 MCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNE 239
+ V G P LL R DD EE +K+RL Y +
Sbjct: 117 -------------LYVDAG---PETMTKRLLKRGETSG----RVDDNEETIKKRLETYYK 156
Query: 240 KSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
++PV FY RG + + + G + + + ++ L+
Sbjct: 157 ATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLD 192
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 89/212 (41%), Gaps = 40/212 (18%)
Query: 60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEIIF 119
LG PG GKGT +L + H+++GDL+R ++ +G+LV E++
Sbjct: 35 LGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVL 94
Query: 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE-EVMDIDLVVNLKLCEDVLLEKCLGR 178
LL + + F++DG+PR + Q E EV V+N + E+V+ ++ L R
Sbjct: 95 ALLKEAM-IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKR 153
Query: 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYN 238
S R DD EE + +R R +N
Sbjct: 154 AETS--------------------------------------NRVDDNEETIVKRFRTFN 175
Query: 239 EKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270
E ++PV E Y+ + K++ D G + + K+
Sbjct: 176 ELTKPVIEHYKQQNKVITIDASGTVDAIFDKV 207
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 41/225 (18%)
Query: 53 RNVQWVFL-GCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGK 111
R + +F+ G PG GKGT +L + G H++TG+L+R I+ +G
Sbjct: 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGD 69
Query: 112 LVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-EEVMDIDLVVNLKLCEDV 170
LV I+ LL + + A G GF++DG+PR VKQ E + D LV+ + D
Sbjct: 70 LVPSGIVLELLKEAMVA-SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADT 128
Query: 171 LLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVV 230
+ + L MS+ DDT + +
Sbjct: 129 MTNRLLQ--------------------------------------MSRSSLPVDDTTKTI 150
Query: 231 KERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
+RL Y S PV +Y + +L + + G + + +L A++
Sbjct: 151 AKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAID 195
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 41/228 (17%)
Query: 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXX-XXXXXXXXXXXXIV 107
+P +V +V LG PG GKGT +L K H++ GDL+R +
Sbjct: 11 SPDQVSVIFV-LGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 69
Query: 108 NQGKLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE-EVMDIDLVVNLKL 166
+G++V EI LL + + F++DGFPR + QA E ++++ ++
Sbjct: 70 KEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDC 129
Query: 167 CEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDT 226
ED++LE+ L R K R+DD
Sbjct: 130 PEDIMLERLLER--------------------------------------GKTSGRSDDN 151
Query: 227 EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274
E +K+R + E S PV E++ + K++ + + + + +A+
Sbjct: 152 IESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAI 199
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 45/223 (20%)
Query: 60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXX-XXXXXXXXXXIVNQGKLVSDEII 118
LG PG GKGT +R+ + G H++ G+L+R + +GK+V EI
Sbjct: 9 LGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEIT 68
Query: 119 FNLLSKRLEAGQAGG--ESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLL 172
+LL + ++ A ++ F++DGFPR + + M D+ V+ ++ +
Sbjct: 69 ISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICI 128
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKE 232
E+CL R S R+DD E +++
Sbjct: 129 ERCLERGKSS--------------------------------------GRSDDNRESLEK 150
Query: 233 RLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275
R++ Y + ++P+ + Y GK+ + D + E + ++++ +
Sbjct: 151 RIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFD 193
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 26/231 (11%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
+ G G GKGT + + + HI +G + R +++G LV D+I
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-----EEVMDIDLVVNLKLCEDVLL 172
++ LE ++ G+ G++LDGFPR QA+ L E+ M I+ V+ + L +V
Sbjct: 64 TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEE-VVK 231
+ +GRR+C + N NI ++ N + C L RADD +E +
Sbjct: 121 NRIMGRRICKNNPNHPN--NIFIEAIKPNGDVCRV-------CGGALSARADDQDEGAIN 171
Query: 232 ERLRVYN---EKSQPVEEFYRNRGK-----LLEFDLPGGIPESWPKLLEAL 274
+R +Y + + +Y+N +E D G I LL L
Sbjct: 172 KRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 98/231 (42%), Gaps = 26/231 (11%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLVSDEI 117
+ G G GKGT + + + HI +G + R +++G LV D+I
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEIL-----EEVMDIDLVVNLKLCEDVLL 172
++ LE ++ G+ G++LDGFPR QA+ L E+ M I+ V+ + L +V
Sbjct: 64 TIPMV---LETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAK 120
Query: 173 EKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEE-VVK 231
+ +GRR+C + N I+ NG+ C L RADD +E +
Sbjct: 121 NRIMGRRICKNNPNHPNNIFIDAIKPNGDVC---------RVCGGALSARADDQDEGAIN 171
Query: 232 ERLRVYN---EKSQPVEEFYRNRGK-----LLEFDLPGGIPESWPKLLEAL 274
+R +Y + + +Y+N +E D G I LL L
Sbjct: 172 KRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 8/129 (6%)
Query: 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRXXXXXXXXXXXXXXXIVNQGKLV 113
NV +V LG PG GKGT + + + G H++ GDL+R ++ G++V
Sbjct: 7 NVVFV-LGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV 65
Query: 114 SDEIIFNLLSKRLEAGQAGGESGFILDGFPR----TVKQAEILEEVMDIDLVVNLKLCED 169
+ LL ++A Q F++DGFPR E +++ +D V+ E+
Sbjct: 66 PSIVTVKLLKNAIDANQG---KNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122
Query: 170 VLLEKCLGR 178
V+ ++ L R
Sbjct: 123 VMTQRLLKR 131
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVR 90
+ G PGVGK T L+ G+ +I GDL R
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 40
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVR 90
+ G PGVGK T L+ G+ +I GDL R
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 47
>pdb|3A4L|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4L|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4M|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|A Chain A, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3A4N|B Chain B, Crystal Structure Of Archaeal O-Phosphoseryl-Trna(Sec)
Kinase
pdb|3AM1|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Anticodon-StemLOOP TRUNCATED TRNA(SEC)
Length = 260
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIAT----GDLVR 90
+ G PGVGK T++ L+K L +I DL+R
Sbjct: 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44
>pdb|3ADB|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADB|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 1)
pdb|3ADC|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADC|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 2)
pdb|3ADD|A Chain A, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
pdb|3ADD|B Chain B, Crystal Structure Of O-Phosphoseryl-Trna Kinase
Complexed With Selenocysteine Trna And Amppnp (Crystal
Type 3)
Length = 259
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 58 VFLGCPGVGKGTYASRLSKFLGVPHIAT----GDLVR 90
+ G PGVGK T++ L+K L +I DL+R
Sbjct: 15 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 51
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 56 QWVFLGCPGVGKGTYASRLSKFLGV 80
+ V +G PG GK T RL+K LGV
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Adp At
2.15 Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate And Amppcp
At 2.85 Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Shikimate Kinase In Complex With Shikimate At 1.75
Angstrom Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 56 QWVFLGCPGVGKGTYASRLSKFLGV 80
+ V +G PG GK T RL+K LGV
Sbjct: 4 KAVLVGLPGSGKSTIGRRLAKALGV 28
>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|B Chain B, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
Length = 80
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 262 GIPESWPKLLEALNLDEYEEKQSAAA 287
G+PE W +LL+ N+ + E+K++ A
Sbjct: 29 GMPEQWARLLQTSNITKSEQKKNPQA 54
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 48 KAPKDRNVQWVFLGCPGVGKGTYASRLSK 76
K K R ++ + +G P VGK T +RL+K
Sbjct: 114 KGVKPRAIRALIIGIPNVGKSTLINRLAK 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,348,668
Number of Sequences: 62578
Number of extensions: 341921
Number of successful extensions: 829
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 60
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)