Query 023080
Match_columns 287
No_of_seqs 285 out of 2151
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:18:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02459 probable adenylate ki 100.0 1.4E-47 3.1E-52 331.6 27.0 238 49-287 24-261 (261)
2 PLN02674 adenylate kinase 100.0 5.6E-43 1.2E-47 301.8 24.7 204 52-274 29-243 (244)
3 PRK14526 adenylate kinase; Pro 100.0 1.4E-39 2.9E-44 276.9 24.2 203 55-276 1-209 (211)
4 PTZ00088 adenylate kinase 1; P 100.0 2.9E-39 6.4E-44 277.8 25.6 214 53-274 5-229 (229)
5 PRK14529 adenylate kinase; Pro 100.0 7.7E-39 1.7E-43 273.1 23.2 205 55-274 1-222 (223)
6 TIGR01351 adk adenylate kinase 100.0 1.6E-38 3.5E-43 271.3 24.9 206 56-275 1-210 (210)
7 PRK00279 adk adenylate kinase; 100.0 3.6E-37 7.7E-42 263.9 24.5 202 55-275 1-213 (215)
8 KOG3079 Uridylate kinase/adeny 100.0 5.1E-36 1.1E-40 241.7 22.2 186 51-276 5-193 (195)
9 PRK14530 adenylate kinase; Pro 100.0 2.5E-35 5.3E-40 252.5 24.3 199 55-276 4-213 (215)
10 KOG3078 Adenylate kinase [Nucl 100.0 8.4E-35 1.8E-39 245.9 18.8 213 53-285 14-233 (235)
11 PRK13808 adenylate kinase; Pro 100.0 5.4E-34 1.2E-38 255.0 22.2 191 55-279 1-196 (333)
12 PRK14528 adenylate kinase; Pro 100.0 2.2E-33 4.8E-38 235.1 23.5 180 55-274 2-186 (186)
13 PLN02842 nucleotide kinase 100.0 2.3E-33 5E-38 262.1 22.2 201 58-278 1-204 (505)
14 cd01428 ADK Adenylate kinase ( 100.0 8.8E-33 1.9E-37 232.5 23.1 190 56-266 1-194 (194)
15 PRK14531 adenylate kinase; Pro 100.0 1.1E-32 2.3E-37 230.4 22.9 175 55-274 3-182 (183)
16 PRK14532 adenylate kinase; Pro 100.0 1.3E-32 2.9E-37 230.7 23.5 181 55-275 1-186 (188)
17 PLN02200 adenylate kinase fami 100.0 1.2E-31 2.7E-36 231.8 24.0 186 50-278 39-226 (234)
18 PRK14527 adenylate kinase; Pro 100.0 1.4E-31 3E-36 225.2 23.5 182 53-275 5-191 (191)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 4.1E-31 8.8E-36 220.6 22.9 178 56-274 1-182 (183)
20 PRK02496 adk adenylate kinase; 100.0 6.4E-31 1.4E-35 219.8 23.6 177 55-275 2-183 (184)
21 COG0563 Adk Adenylate kinase a 100.0 1.4E-29 3.1E-34 209.6 20.0 172 55-274 1-177 (178)
22 PF00406 ADK: Adenylate kinase 100.0 5.4E-29 1.2E-33 201.7 18.5 145 59-252 1-150 (151)
23 TIGR01360 aden_kin_iso1 adenyl 100.0 7.3E-28 1.6E-32 201.5 24.5 183 54-275 3-186 (188)
24 PRK01184 hypothetical protein; 99.8 1.1E-16 2.5E-21 133.5 20.6 168 55-276 2-178 (184)
25 PRK13974 thymidylate kinase; P 99.8 1.3E-17 2.7E-22 142.6 14.1 177 53-277 2-207 (212)
26 PRK03839 putative kinase; Prov 99.8 2.7E-17 5.8E-22 136.9 14.8 153 55-277 1-154 (180)
27 COG0703 AroK Shikimate kinase 99.7 9E-17 1.9E-21 130.6 15.8 111 54-178 2-115 (172)
28 PRK13973 thymidylate kinase; P 99.7 3.4E-16 7.5E-21 133.8 19.5 177 53-278 2-208 (213)
29 PRK08356 hypothetical protein; 99.7 1.3E-16 2.8E-21 134.6 13.6 118 53-179 4-136 (195)
30 PRK06217 hypothetical protein; 99.7 6.8E-16 1.5E-20 128.9 16.2 171 55-276 2-179 (183)
31 PRK13949 shikimate kinase; Pro 99.7 1.9E-15 4.2E-20 124.5 17.3 108 56-178 3-114 (169)
32 PRK13948 shikimate kinase; Pro 99.7 3.2E-15 6.9E-20 124.3 16.0 115 49-177 5-122 (182)
33 PRK13975 thymidylate kinase; P 99.6 3.2E-14 7E-19 119.8 18.1 171 54-278 2-192 (196)
34 PRK08233 hypothetical protein; 99.6 7.2E-15 1.6E-19 122.0 13.9 172 53-276 2-177 (182)
35 COG1102 Cmk Cytidylate kinase 99.6 6.1E-14 1.3E-18 111.6 17.8 112 55-179 1-112 (179)
36 PRK00081 coaE dephospho-CoA ki 99.6 8.5E-15 1.8E-19 123.4 13.9 165 55-275 3-192 (194)
37 PRK13946 shikimate kinase; Pro 99.6 2.7E-14 6E-19 119.3 16.9 167 53-278 9-178 (184)
38 PLN02924 thymidylate kinase 99.6 3.2E-14 7E-19 121.9 16.7 174 50-276 12-203 (220)
39 PRK03731 aroL shikimate kinase 99.6 3.1E-14 6.7E-19 117.4 16.0 108 56-178 4-114 (171)
40 PRK14730 coaE dephospho-CoA ki 99.6 3.1E-14 6.8E-19 120.0 16.0 166 55-275 2-193 (195)
41 PHA02530 pseT polynucleotide k 99.6 8.6E-15 1.9E-19 131.4 13.3 162 54-265 2-171 (300)
42 PRK00625 shikimate kinase; Pro 99.6 1.7E-14 3.6E-19 119.2 13.6 114 55-179 1-117 (173)
43 PRK13947 shikimate kinase; Pro 99.6 3.6E-14 7.9E-19 116.9 15.3 109 56-179 3-115 (171)
44 COG0125 Tmk Thymidylate kinase 99.6 3.8E-14 8.2E-19 119.9 15.4 178 53-277 2-204 (208)
45 PRK04040 adenylate kinase; Pro 99.6 1.9E-13 4.1E-18 114.5 18.8 175 54-275 2-188 (188)
46 PRK05057 aroK shikimate kinase 99.6 1.2E-13 2.5E-18 114.3 15.7 112 53-179 3-118 (172)
47 PRK00698 tmk thymidylate kinas 99.6 8.5E-14 1.8E-18 117.9 14.9 172 53-276 2-202 (205)
48 PRK00131 aroK shikimate kinase 99.6 1.2E-13 2.5E-18 113.8 15.2 114 52-179 2-118 (175)
49 PRK04182 cytidylate kinase; Pr 99.6 2.4E-13 5.2E-18 112.6 16.9 113 55-179 1-113 (180)
50 PRK08118 topology modulation p 99.6 2.2E-14 4.7E-19 118.0 10.4 99 55-180 2-101 (167)
51 PRK14731 coaE dephospho-CoA ki 99.6 9.2E-14 2E-18 118.4 14.2 169 52-276 3-202 (208)
52 TIGR00041 DTMP_kinase thymidyl 99.6 7.6E-14 1.6E-18 117.4 13.4 119 54-179 3-149 (195)
53 PLN02199 shikimate kinase 99.6 2.7E-13 5.8E-18 119.4 17.1 111 53-177 101-214 (303)
54 TIGR02173 cyt_kin_arch cytidyl 99.6 8.1E-13 1.8E-17 108.6 19.1 113 55-179 1-113 (171)
55 PRK14734 coaE dephospho-CoA ki 99.5 4.2E-13 9.2E-18 113.5 17.1 165 55-275 2-193 (200)
56 cd01672 TMPK Thymidine monopho 99.5 6.5E-13 1.4E-17 111.5 17.7 170 55-275 1-199 (200)
57 PRK14021 bifunctional shikimat 99.5 2.4E-13 5.1E-18 131.2 16.6 116 52-178 4-123 (542)
58 TIGR01313 therm_gnt_kin carboh 99.5 5.9E-13 1.3E-17 108.8 16.3 156 57-274 1-161 (163)
59 COG1936 Predicted nucleotide k 99.5 4.6E-13 1E-17 108.0 14.7 153 55-276 1-156 (180)
60 PRK06762 hypothetical protein; 99.5 4.9E-13 1.1E-17 109.7 15.2 157 54-276 2-164 (166)
61 COG0237 CoaE Dephospho-CoA kin 99.5 6.8E-13 1.5E-17 111.8 16.3 165 54-277 2-193 (201)
62 PLN02422 dephospho-CoA kinase 99.5 5.6E-13 1.2E-17 114.6 15.8 165 56-276 3-194 (232)
63 PRK14733 coaE dephospho-CoA ki 99.5 4.6E-13 9.9E-18 113.2 14.2 172 53-278 5-200 (204)
64 KOG3347 Predicted nucleotide k 99.5 4.9E-13 1.1E-17 105.0 13.1 109 53-179 6-114 (176)
65 TIGR00152 dephospho-CoA kinase 99.5 7.4E-13 1.6E-17 111.0 14.2 160 56-271 1-187 (188)
66 PRK08154 anaerobic benzoate ca 99.5 7.7E-13 1.7E-17 119.3 15.1 115 51-179 130-248 (309)
67 PTZ00451 dephospho-CoA kinase; 99.5 1.7E-12 3.7E-17 112.6 16.1 168 55-276 2-207 (244)
68 PRK10078 ribose 1,5-bisphospho 99.5 1.2E-12 2.7E-17 109.5 14.7 165 55-280 3-180 (186)
69 PRK13976 thymidylate kinase; P 99.5 1.7E-12 3.7E-17 110.4 15.7 173 55-278 1-203 (209)
70 PF01202 SKI: Shikimate kinase 99.5 2E-12 4.3E-17 105.4 14.8 103 63-179 1-106 (158)
71 PRK07933 thymidylate kinase; V 99.5 6.9E-13 1.5E-17 113.3 12.6 173 55-274 1-211 (213)
72 cd00464 SK Shikimate kinase (S 99.5 3.8E-12 8.2E-17 102.8 16.0 109 57-179 2-113 (154)
73 COG3265 GntK Gluconate kinase 99.5 2.6E-12 5.6E-17 100.9 13.7 155 60-276 1-159 (161)
74 PF02223 Thymidylate_kin: Thym 99.4 7E-13 1.5E-17 110.8 10.8 113 59-179 1-140 (186)
75 PF13671 AAA_33: AAA domain; P 99.4 8.5E-13 1.8E-17 105.2 10.3 113 56-180 1-120 (143)
76 cd02022 DPCK Dephospho-coenzym 99.4 1.8E-12 4E-17 107.8 12.5 118 56-179 1-143 (179)
77 KOG3354 Gluconate kinase [Carb 99.4 2.6E-12 5.7E-17 101.4 12.4 163 53-275 11-187 (191)
78 PRK12339 2-phosphoglycerate ki 99.4 6.6E-12 1.4E-16 105.8 14.8 120 53-179 2-141 (197)
79 PRK14732 coaE dephospho-CoA ki 99.4 9E-12 1.9E-16 105.0 15.5 163 57-275 2-189 (196)
80 PRK07261 topology modulation p 99.4 8.4E-13 1.8E-17 109.0 8.8 101 55-180 1-101 (171)
81 smart00072 GuKc Guanylate kina 99.4 7.4E-13 1.6E-17 110.6 8.1 164 55-277 3-183 (184)
82 PF01121 CoaE: Dephospho-CoA k 99.4 1.6E-12 3.4E-17 108.0 9.7 117 55-179 1-144 (180)
83 cd02030 NDUO42 NADH:Ubiquinone 99.4 2E-11 4.3E-16 104.8 16.8 124 56-179 1-164 (219)
84 PRK14738 gmk guanylate kinase; 99.4 1.8E-12 3.9E-17 110.3 9.6 169 51-277 10-195 (206)
85 TIGR02322 phosphon_PhnN phosph 99.4 1.9E-11 4.1E-16 101.5 15.3 163 55-276 2-178 (179)
86 KOG3220 Similar to bacterial d 99.4 6.6E-12 1.4E-16 103.4 11.7 168 55-278 2-196 (225)
87 COG0194 Gmk Guanylate kinase [ 99.3 2E-11 4.4E-16 100.0 13.1 164 53-277 3-183 (191)
88 TIGR03574 selen_PSTK L-seryl-t 99.3 3.2E-11 6.8E-16 105.6 15.4 158 56-276 1-169 (249)
89 PRK03333 coaE dephospho-CoA ki 99.3 1.2E-11 2.6E-16 114.9 13.3 120 55-179 2-145 (395)
90 cd00227 CPT Chloramphenicol (C 99.3 5.8E-11 1.3E-15 98.3 15.2 122 54-179 2-132 (175)
91 PRK09825 idnK D-gluconate kina 99.3 7.1E-11 1.5E-15 97.9 15.1 161 54-278 3-170 (176)
92 PRK14737 gmk guanylate kinase; 99.3 4.3E-11 9.4E-16 100.1 13.4 164 52-276 2-184 (186)
93 cd02020 CMPK Cytidine monophos 99.3 1.5E-11 3.3E-16 98.3 10.1 103 56-178 1-103 (147)
94 PRK05480 uridine/cytidine kina 99.3 4.8E-11 1E-15 101.6 13.2 123 51-179 3-147 (209)
95 PRK05541 adenylylsulfate kinas 99.3 7.1E-11 1.5E-15 97.8 13.7 113 51-177 4-121 (176)
96 cd02021 GntK Gluconate kinase 99.3 8.6E-11 1.9E-15 94.6 13.8 114 56-179 1-119 (150)
97 PRK13951 bifunctional shikimat 99.3 6.3E-11 1.4E-15 112.8 14.4 109 55-178 1-112 (488)
98 PRK00300 gmk guanylate kinase; 99.3 2.1E-10 4.6E-15 97.2 15.9 168 51-277 2-185 (205)
99 KOG3327 Thymidylate kinase/ade 99.3 1E-10 2.2E-15 95.2 12.7 176 52-278 3-197 (208)
100 PRK11545 gntK gluconate kinase 99.3 6E-11 1.3E-15 97.2 11.4 157 60-276 1-160 (163)
101 PRK06547 hypothetical protein; 99.2 1.2E-11 2.5E-16 102.2 6.1 125 51-179 12-139 (172)
102 PF13207 AAA_17: AAA domain; P 99.2 6.4E-12 1.4E-16 97.4 3.9 110 56-179 1-111 (121)
103 cd01673 dNK Deoxyribonucleosid 99.2 5.6E-10 1.2E-14 93.7 15.8 28 56-83 1-28 (193)
104 PRK12338 hypothetical protein; 99.2 7.5E-10 1.6E-14 99.2 16.9 127 52-179 2-151 (319)
105 COG1428 Deoxynucleoside kinase 99.2 2.5E-10 5.4E-15 95.3 12.6 31 53-83 3-33 (216)
106 PRK13477 bifunctional pantoate 99.2 6.8E-10 1.5E-14 105.6 14.8 42 51-92 281-322 (512)
107 PRK00889 adenylylsulfate kinas 99.2 6.7E-10 1.5E-14 91.9 13.0 110 52-175 2-117 (175)
108 TIGR03263 guanyl_kin guanylate 99.2 1.9E-10 4.1E-15 95.4 9.7 162 55-275 2-179 (180)
109 PRK00023 cmk cytidylate kinase 99.1 3.4E-09 7.3E-14 91.4 14.1 38 54-91 4-41 (225)
110 TIGR00017 cmk cytidylate kinas 99.1 5.2E-09 1.1E-13 89.6 15.0 39 54-92 2-40 (217)
111 COG0283 Cmk Cytidylate kinase 99.0 6.3E-09 1.4E-13 87.2 13.6 39 54-92 4-42 (222)
112 PRK05537 bifunctional sulfate 99.0 2.6E-09 5.6E-14 103.6 12.9 109 51-175 389-509 (568)
113 TIGR00235 udk uridine kinase. 99.0 2E-09 4.4E-14 91.5 10.8 123 51-179 3-147 (207)
114 PRK11860 bifunctional 3-phosph 99.0 8E-09 1.7E-13 102.3 15.4 41 52-92 440-480 (661)
115 COG0572 Udk Uridine kinase [Nu 99.0 3.2E-09 7E-14 89.7 10.7 123 52-179 6-149 (218)
116 PRK04220 2-phosphoglycerate ki 99.0 2.1E-08 4.5E-13 89.2 16.3 125 52-179 90-236 (301)
117 COG0645 Predicted kinase [Gene 99.0 3E-08 6.5E-13 80.2 15.7 114 55-180 2-126 (170)
118 COG2019 AdkA Archaeal adenylat 99.0 6.1E-08 1.3E-12 78.0 16.7 115 54-177 4-129 (189)
119 PF13238 AAA_18: AAA domain; P 99.0 4E-10 8.7E-15 87.7 4.1 111 57-180 1-114 (129)
120 PRK07667 uridine kinase; Provi 99.0 2.5E-09 5.3E-14 90.1 8.6 121 53-178 16-159 (193)
121 PRK09518 bifunctional cytidyla 99.0 2.7E-09 5.7E-14 106.6 10.0 38 55-92 2-39 (712)
122 TIGR00455 apsK adenylylsulfate 99.0 1.6E-08 3.4E-13 84.3 13.2 109 52-174 16-132 (184)
123 KOG3877 NADH:ubiquinone oxidor 99.0 7.8E-08 1.7E-12 83.2 17.3 35 50-84 67-101 (393)
124 cd02024 NRK1 Nicotinamide ribo 98.9 2.6E-09 5.7E-14 89.2 7.7 36 56-91 1-37 (187)
125 PRK06696 uridine kinase; Valid 98.9 2.4E-09 5.1E-14 92.2 7.4 41 51-91 19-64 (223)
126 PRK05416 glmZ(sRNA)-inactivati 98.9 3.7E-08 8E-13 87.7 15.0 96 53-178 5-106 (288)
127 cd02023 UMPK Uridine monophosp 98.9 1E-08 2.2E-13 86.5 10.7 35 56-90 1-38 (198)
128 TIGR01663 PNK-3'Pase polynucle 98.9 1.2E-08 2.6E-13 97.5 12.3 101 51-180 366-470 (526)
129 PRK03846 adenylylsulfate kinas 98.9 2.3E-08 5E-13 84.4 12.6 107 52-174 22-138 (198)
130 COG4088 Predicted nucleotide k 98.9 4.3E-08 9.3E-13 81.6 13.0 111 55-178 2-122 (261)
131 PTZ00301 uridine kinase; Provi 98.9 1.5E-08 3.2E-13 86.3 10.1 117 54-179 3-148 (210)
132 PHA03132 thymidine kinase; Pro 98.9 3.7E-08 8E-13 94.6 13.8 127 53-179 256-423 (580)
133 cd02027 APSK Adenosine 5'-phos 98.9 5E-08 1.1E-12 78.7 12.5 107 56-177 1-116 (149)
134 PF00625 Guanylate_kin: Guanyl 98.9 2E-08 4.4E-13 83.7 10.1 164 54-276 2-182 (183)
135 PRK12337 2-phosphoglycerate ki 98.8 2.5E-07 5.5E-12 86.5 17.6 44 52-95 253-296 (475)
136 PRK12269 bifunctional cytidyla 98.8 7.6E-08 1.6E-12 96.9 14.9 40 53-92 33-72 (863)
137 PF01583 APS_kinase: Adenylyls 98.8 3.3E-08 7.1E-13 79.9 9.7 109 53-175 1-117 (156)
138 PLN02348 phosphoribulokinase 98.8 2.8E-08 6E-13 91.1 10.1 29 51-79 46-74 (395)
139 PLN02772 guanylate kinase 98.8 9.5E-08 2.1E-12 87.7 13.1 172 53-279 134-321 (398)
140 PF06414 Zeta_toxin: Zeta toxi 98.8 3E-08 6.5E-13 83.8 8.0 120 50-179 11-142 (199)
141 PF07931 CPT: Chloramphenicol 98.7 3E-08 6.5E-13 81.8 7.7 112 55-179 2-131 (174)
142 PRK07429 phosphoribulokinase; 98.7 3.1E-08 6.8E-13 89.7 8.3 39 51-89 5-46 (327)
143 PRK05506 bifunctional sulfate 98.7 1.3E-07 2.9E-12 93.3 12.5 108 49-175 455-575 (632)
144 TIGR03575 selen_PSTK_euk L-ser 98.7 1.6E-07 3.4E-12 85.3 11.9 34 57-90 2-41 (340)
145 COG4639 Predicted kinase [Gene 98.7 2.4E-07 5.3E-12 73.7 10.8 111 55-178 3-117 (168)
146 PRK09270 nucleoside triphospha 98.7 9.9E-08 2.1E-12 82.5 9.3 28 52-79 31-58 (229)
147 cd02025 PanK Pantothenate kina 98.7 1.5E-07 3.3E-12 80.8 10.2 34 56-89 1-41 (220)
148 COG0529 CysC Adenylylsulfate k 98.6 5E-07 1.1E-11 73.5 11.4 111 51-175 20-138 (197)
149 PF00485 PRK: Phosphoribulokin 98.6 2.9E-08 6.4E-13 83.5 4.5 24 56-79 1-24 (194)
150 cd02019 NK Nucleoside/nucleoti 98.6 1E-07 2.2E-12 66.5 6.2 23 56-78 1-23 (69)
151 PRK05439 pantothenate kinase; 98.6 1.6E-07 3.5E-12 84.2 8.6 41 50-90 82-129 (311)
152 PF01591 6PF2K: 6-phosphofruct 98.6 1.3E-06 2.8E-11 74.8 12.6 165 52-260 10-195 (222)
153 COG3709 Uncharacterized compon 98.5 2.3E-06 5.1E-11 68.6 12.7 166 53-278 4-184 (192)
154 PF08433 KTI12: Chromatin asso 98.5 1.5E-06 3.2E-11 76.9 12.6 106 55-179 2-120 (270)
155 cd02028 UMPK_like Uridine mono 98.5 2.1E-07 4.5E-12 77.4 6.7 36 56-91 1-41 (179)
156 cd02026 PRK Phosphoribulokinas 98.5 1.4E-07 3.1E-12 83.5 5.9 34 56-89 1-37 (273)
157 PF03668 ATP_bind_2: P-loop AT 98.5 5.1E-06 1.1E-10 73.1 15.0 100 56-183 3-108 (284)
158 TIGR00554 panK_bact pantothena 98.5 3.6E-07 7.8E-12 81.4 7.9 40 51-90 59-105 (290)
159 PHA00729 NTP-binding motif con 98.4 1.8E-06 4E-11 73.8 10.3 110 55-180 18-141 (226)
160 COG2074 2-phosphoglycerate kin 98.4 7.9E-06 1.7E-10 70.1 13.9 47 49-95 84-130 (299)
161 PLN02318 phosphoribulokinase/u 98.4 1.4E-06 2.9E-11 83.8 10.3 37 52-88 63-100 (656)
162 PLN02165 adenylate isopentenyl 98.4 3.1E-06 6.7E-11 76.4 11.5 37 52-88 41-77 (334)
163 PRK15453 phosphoribulokinase; 98.3 5.7E-06 1.2E-10 72.9 11.0 39 52-90 3-46 (290)
164 PRK09169 hypothetical protein; 98.2 3E-05 6.4E-10 83.2 13.9 107 55-178 2111-2220(2316)
165 KOG3308 Uncharacterized protei 98.1 3.3E-05 7.1E-10 64.2 10.2 121 53-180 3-150 (225)
166 COG4185 Uncharacterized protei 98.1 0.00011 2.3E-09 59.1 12.5 111 54-179 2-118 (187)
167 COG1660 Predicted P-loop-conta 98.1 0.00022 4.8E-09 61.6 15.2 100 56-183 3-109 (286)
168 PF00004 AAA: ATPase family as 98.1 3.2E-06 7E-11 65.7 3.7 29 57-85 1-29 (132)
169 PHA03136 thymidine kinase; Pro 98.1 0.00016 3.4E-09 66.2 14.5 25 53-77 35-59 (378)
170 KOG0733 Nuclear AAA ATPase (VC 98.1 2.5E-05 5.4E-10 74.6 9.6 120 53-177 222-371 (802)
171 PF13189 Cytidylate_kin2: Cyti 98.0 5.5E-05 1.2E-09 62.8 9.3 115 56-178 1-134 (179)
172 PTZ00322 6-phosphofructo-2-kin 97.9 5.5E-05 1.2E-09 75.3 10.2 33 53-85 214-246 (664)
173 PRK05800 cobU adenosylcobinami 97.9 1.2E-05 2.7E-10 66.2 4.4 34 55-88 2-37 (170)
174 cd00071 GMPK Guanosine monopho 97.9 4.1E-05 8.9E-10 60.7 7.0 23 57-79 2-24 (137)
175 COG1072 CoaA Panthothenate kin 97.9 1.4E-05 3E-10 69.7 4.5 30 49-78 77-106 (283)
176 PRK00091 miaA tRNA delta(2)-is 97.9 1.4E-05 3.1E-10 71.8 4.6 36 53-88 3-38 (307)
177 KOG0635 Adenosine 5'-phosphosu 97.9 0.00019 4.2E-09 57.0 10.3 44 51-94 28-75 (207)
178 PRK12724 flagellar biosynthesi 97.9 0.00016 3.6E-09 67.3 11.4 92 53-155 222-324 (432)
179 TIGR02881 spore_V_K stage V sp 97.9 9.3E-05 2E-09 65.2 9.5 28 51-78 39-66 (261)
180 KOG0730 AAA+-type ATPase [Post 97.8 0.0001 2.2E-09 71.1 9.9 35 51-85 465-499 (693)
181 PF13521 AAA_28: AAA domain; P 97.8 1.4E-05 3E-10 65.1 3.1 37 56-95 1-37 (163)
182 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00024 5.1E-09 68.0 11.5 33 53-85 258-290 (489)
183 PRK08099 bifunctional DNA-bind 97.8 0.00031 6.7E-09 65.6 11.7 31 53-83 218-248 (399)
184 cd02029 PRK_like Phosphoribulo 97.7 0.0002 4.4E-09 62.7 9.4 35 56-90 1-40 (277)
185 PLN02840 tRNA dimethylallyltra 97.7 3.9E-05 8.5E-10 71.4 5.2 35 53-87 20-54 (421)
186 TIGR03707 PPK2_P_aer polyphosp 97.7 0.0013 2.8E-08 56.7 14.1 34 52-85 29-62 (230)
187 COG1618 Predicted nucleotide k 97.7 3.8E-05 8.2E-10 61.8 4.0 29 53-81 4-32 (179)
188 TIGR00390 hslU ATP-dependent p 97.7 3.5E-05 7.5E-10 71.6 4.3 35 53-87 46-80 (441)
189 KOG0744 AAA+-type ATPase [Post 97.7 0.0001 2.2E-09 65.7 6.9 26 55-80 178-203 (423)
190 PF05496 RuvB_N: Holliday junc 97.7 4.2E-05 9.1E-10 65.2 4.3 31 54-84 50-80 (233)
191 CHL00181 cbbX CbbX; Provisiona 97.7 0.00018 3.9E-09 64.3 8.5 28 51-78 56-83 (287)
192 PF01745 IPT: Isopentenyl tran 97.7 0.00018 4E-09 60.6 8.0 120 55-178 2-138 (233)
193 smart00382 AAA ATPases associa 97.7 3.9E-05 8.4E-10 59.3 3.5 28 54-81 2-29 (148)
194 KOG0707 Guanylate kinase [Nucl 97.7 0.00015 3.2E-09 61.7 7.0 176 55-282 38-227 (231)
195 PRK06761 hypothetical protein; 97.6 4.7E-05 1E-09 67.5 4.0 30 54-83 3-32 (282)
196 PHA02575 1 deoxynucleoside mon 97.6 7.5E-05 1.6E-09 63.6 4.8 39 55-94 1-40 (227)
197 PRK05201 hslU ATP-dependent pr 97.6 5.2E-05 1.1E-09 70.5 4.1 35 53-87 49-83 (443)
198 PF07728 AAA_5: AAA domain (dy 97.6 5.9E-05 1.3E-09 59.6 3.9 29 57-85 2-30 (139)
199 PLN02748 tRNA dimethylallyltra 97.6 6.1E-05 1.3E-09 71.3 4.5 38 50-87 18-55 (468)
200 PF13401 AAA_22: AAA domain; P 97.6 0.0002 4.3E-09 55.6 6.7 84 53-142 3-96 (131)
201 PF13173 AAA_14: AAA domain 97.6 0.00061 1.3E-08 53.2 9.2 96 55-174 3-104 (128)
202 TIGR00174 miaA tRNA isopenteny 97.6 6E-05 1.3E-09 67.1 3.8 33 56-88 1-33 (287)
203 COG1222 RPT1 ATP-dependent 26S 97.6 0.00035 7.6E-09 63.1 8.5 46 52-97 183-230 (406)
204 TIGR03709 PPK2_rel_1 polyphosp 97.6 0.0029 6.3E-08 55.6 14.0 34 52-85 54-87 (264)
205 PLN00020 ribulose bisphosphate 97.6 0.00016 3.5E-09 66.0 6.2 39 51-89 145-185 (413)
206 smart00763 AAA_PrkA PrkA AAA d 97.5 9.9E-05 2.1E-09 67.4 4.4 28 53-80 77-104 (361)
207 TIGR03708 poly_P_AMP_trns poly 97.5 0.0018 3.9E-08 61.7 13.0 34 51-84 37-70 (493)
208 PRK14974 cell division protein 97.5 0.00043 9.4E-09 63.1 8.4 27 52-78 138-164 (336)
209 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00014 2.9E-09 57.4 4.2 29 53-81 21-49 (133)
210 PLN02796 D-glycerate 3-kinase 97.5 0.00012 2.6E-09 66.5 4.0 38 52-89 98-140 (347)
211 TIGR01241 FtsH_fam ATP-depende 97.4 0.0014 3.1E-08 63.0 11.4 34 52-85 86-119 (495)
212 TIGR02880 cbbX_cfxQ probable R 97.4 0.00062 1.3E-08 60.8 8.0 26 53-78 57-82 (284)
213 TIGR01650 PD_CobS cobaltochela 97.4 0.00017 3.6E-09 65.2 4.0 30 55-84 65-94 (327)
214 cd00009 AAA The AAA+ (ATPases 97.4 0.00024 5.1E-09 55.4 4.4 32 54-85 19-53 (151)
215 KOG0739 AAA+-type ATPase [Post 97.4 0.0016 3.4E-08 57.7 9.8 122 52-177 163-309 (439)
216 PRK03992 proteasome-activating 97.4 0.0002 4.3E-09 66.8 4.4 34 52-85 163-196 (389)
217 PF08303 tRNA_lig_kinase: tRNA 97.4 0.0047 1E-07 50.1 11.7 32 57-88 2-34 (168)
218 TIGR00064 ftsY signal recognit 97.3 0.001 2.3E-08 58.9 8.4 27 52-78 70-96 (272)
219 PLN03046 D-glycerate 3-kinase; 97.3 0.0002 4.2E-09 66.6 3.9 39 51-89 209-252 (460)
220 PF03976 PPK2: Polyphosphate k 97.3 0.00064 1.4E-08 58.6 6.8 31 53-83 30-60 (228)
221 COG2256 MGS1 ATPase related to 97.3 0.00016 3.5E-09 66.1 3.2 31 55-85 49-79 (436)
222 COG1223 Predicted ATPase (AAA+ 97.3 0.00055 1.2E-08 59.4 6.1 33 53-85 150-182 (368)
223 KOG4235 Mitochondrial thymidin 97.3 0.018 3.8E-07 48.0 14.6 23 157-179 153-175 (244)
224 TIGR01243 CDC48 AAA family ATP 97.3 0.002 4.3E-08 65.1 11.1 33 53-85 486-518 (733)
225 KOG0738 AAA+-type ATPase [Post 97.3 0.0037 8E-08 57.2 11.5 30 56-85 247-276 (491)
226 PF03266 NTPase_1: NTPase; In 97.3 0.00025 5.4E-09 58.3 3.8 23 56-78 1-23 (168)
227 KOG0731 AAA+-type ATPase conta 97.3 0.0012 2.6E-08 65.4 9.0 131 40-176 331-491 (774)
228 COG0324 MiaA tRNA delta(2)-iso 97.3 0.00034 7.3E-09 62.6 4.7 37 53-89 2-38 (308)
229 PRK05342 clpX ATP-dependent pr 97.3 0.0003 6.4E-09 66.0 4.6 33 54-86 108-140 (412)
230 PF13245 AAA_19: Part of AAA d 97.3 0.00033 7.1E-09 49.7 3.7 25 54-78 10-35 (76)
231 PTZ00454 26S protease regulato 97.3 0.00032 6.9E-09 65.5 4.6 34 52-85 177-210 (398)
232 TIGR01242 26Sp45 26S proteasom 97.3 0.00033 7.1E-09 64.7 4.6 33 53-85 155-187 (364)
233 PRK00771 signal recognition pa 97.3 0.0011 2.3E-08 62.6 8.1 27 52-78 93-119 (437)
234 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00031 6.7E-09 61.9 4.1 29 56-84 23-51 (262)
235 PRK06620 hypothetical protein; 97.2 0.0015 3.2E-08 55.9 8.2 30 55-84 45-74 (214)
236 TIGR01425 SRP54_euk signal rec 97.2 0.003 6.4E-08 59.4 10.8 27 52-78 98-124 (429)
237 TIGR01526 nadR_NMN_Atrans nico 97.2 0.00034 7.4E-09 63.6 4.4 31 54-84 162-192 (325)
238 TIGR00959 ffh signal recogniti 97.2 0.0022 4.9E-08 60.3 9.9 27 52-78 97-123 (428)
239 PRK10867 signal recognition pa 97.2 0.0022 4.8E-08 60.4 9.8 35 52-86 98-138 (433)
240 CHL00176 ftsH cell division pr 97.2 0.0047 1E-07 61.1 12.4 33 53-85 215-247 (638)
241 PF00448 SRP54: SRP54-type pro 97.2 0.00038 8.2E-09 58.7 4.0 25 54-78 1-25 (196)
242 PRK12723 flagellar biosynthesi 97.2 0.0013 2.9E-08 61.0 7.8 27 52-78 172-198 (388)
243 PHA03134 thymidine kinase; Pro 97.2 0.025 5.5E-07 51.2 15.6 26 52-77 11-36 (340)
244 PRK12377 putative replication 97.2 0.0056 1.2E-07 53.5 11.0 37 55-91 102-143 (248)
245 TIGR00382 clpX endopeptidase C 97.1 0.00044 9.5E-09 64.7 4.2 32 54-85 116-147 (413)
246 PF07724 AAA_2: AAA domain (Cd 97.1 0.00055 1.2E-08 56.4 4.3 27 54-80 3-29 (171)
247 COG3911 Predicted ATPase [Gene 97.1 0.00052 1.1E-08 54.6 3.9 31 51-82 6-36 (183)
248 TIGR00635 ruvB Holliday juncti 97.1 0.00055 1.2E-08 61.5 4.7 30 53-82 29-58 (305)
249 PF06745 KaiC: KaiC; InterPro 97.1 0.0013 2.9E-08 56.4 6.8 58 53-110 18-81 (226)
250 PTZ00361 26 proteosome regulat 97.1 0.00053 1.2E-08 64.7 4.6 33 53-85 216-248 (438)
251 PF06309 Torsin: Torsin; Inte 97.1 0.0007 1.5E-08 52.5 4.3 30 49-78 48-77 (127)
252 COG1126 GlnQ ABC-type polar am 97.1 0.00043 9.3E-09 58.5 3.4 23 53-75 27-49 (240)
253 PF02367 UPF0079: Uncharacteri 97.1 0.00062 1.4E-08 52.8 4.1 29 53-81 14-42 (123)
254 TIGR01243 CDC48 AAA family ATP 97.1 0.003 6.5E-08 63.8 10.1 33 53-85 211-243 (733)
255 PF05729 NACHT: NACHT domain 97.1 0.00049 1.1E-08 55.4 3.6 23 56-78 2-24 (166)
256 PF07726 AAA_3: ATPase family 97.1 0.00031 6.7E-09 54.7 2.3 29 57-85 2-30 (131)
257 PF00910 RNA_helicase: RNA hel 97.1 0.00042 9.2E-09 52.4 2.9 22 57-78 1-22 (107)
258 PRK09087 hypothetical protein; 97.1 0.00067 1.5E-08 58.5 4.5 37 55-91 45-81 (226)
259 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0015 3.2E-08 56.7 6.6 26 52-77 19-44 (237)
260 TIGR01618 phage_P_loop phage n 97.1 0.00055 1.2E-08 58.6 3.9 35 51-87 9-43 (220)
261 PRK00080 ruvB Holliday junctio 97.1 0.00064 1.4E-08 61.9 4.5 31 53-83 50-80 (328)
262 PHA02244 ATPase-like protein 97.1 0.00056 1.2E-08 62.7 4.0 33 56-88 121-153 (383)
263 COG0464 SpoVK ATPases of the A 97.1 0.00094 2E-08 64.2 5.7 33 53-85 275-307 (494)
264 cd01124 KaiC KaiC is a circadi 97.0 0.0006 1.3E-08 56.4 3.8 30 57-86 2-36 (187)
265 PRK10751 molybdopterin-guanine 97.0 0.00069 1.5E-08 55.8 4.0 27 53-79 5-31 (173)
266 PF03215 Rad17: Rad17 cell cyc 97.0 0.00076 1.6E-08 65.0 4.8 30 54-83 45-74 (519)
267 PRK04195 replication factor C 97.0 0.00072 1.6E-08 64.9 4.7 32 54-85 39-70 (482)
268 PF03029 ATP_bind_1: Conserved 97.0 0.00041 8.9E-09 60.3 2.7 22 59-80 1-22 (238)
269 PRK04328 hypothetical protein; 97.0 0.0017 3.6E-08 56.9 6.5 25 53-77 22-46 (249)
270 PRK14729 miaA tRNA delta(2)-is 97.0 0.0009 1.9E-08 60.0 4.8 34 54-88 4-37 (300)
271 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00077 1.7E-08 51.0 3.7 23 53-75 14-36 (107)
272 TIGR00101 ureG urease accessor 97.0 0.00074 1.6E-08 57.1 4.0 25 54-78 1-25 (199)
273 PRK08116 hypothetical protein; 97.0 0.0087 1.9E-07 53.0 10.6 37 55-91 115-156 (268)
274 PF10662 PduV-EutP: Ethanolami 97.0 0.00068 1.5E-08 53.9 3.2 22 55-76 2-23 (143)
275 KOG2702 Predicted panthothenat 97.0 0.0029 6.2E-08 54.0 7.0 29 53-81 118-146 (323)
276 PRK08533 flagellar accessory p 96.9 0.0021 4.5E-08 55.6 6.4 24 53-76 23-46 (230)
277 PHA03135 thymidine kinase; Pro 96.9 0.04 8.6E-07 50.0 14.6 26 52-77 8-33 (343)
278 PRK13342 recombination factor 96.9 0.001 2.2E-08 62.6 4.7 32 54-85 36-67 (413)
279 TIGR03708 poly_P_AMP_trns poly 96.9 0.017 3.8E-07 55.1 13.0 110 51-182 296-428 (493)
280 COG0466 Lon ATP-dependent Lon 96.9 0.00092 2E-08 65.4 4.4 35 51-85 347-381 (782)
281 PRK09435 membrane ATPase/prote 96.9 0.00097 2.1E-08 60.7 4.3 28 51-78 53-80 (332)
282 KOG0735 AAA+-type ATPase [Post 96.9 0.0056 1.2E-07 60.0 9.5 54 53-109 700-755 (952)
283 PRK06067 flagellar accessory p 96.9 0.0023 5E-08 55.3 6.4 38 52-89 23-65 (234)
284 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0011 2.4E-08 56.6 4.3 36 53-88 37-77 (226)
285 COG1136 SalX ABC-type antimicr 96.9 0.00087 1.9E-08 57.4 3.6 24 53-76 30-53 (226)
286 COG3839 MalK ABC-type sugar tr 96.9 0.00074 1.6E-08 61.3 3.2 25 53-77 28-52 (338)
287 cd03115 SRP The signal recogni 96.9 0.00099 2.1E-08 54.7 3.7 31 56-86 2-37 (173)
288 TIGR03015 pepcterm_ATPase puta 96.9 0.001 2.2E-08 58.5 3.9 27 53-79 42-68 (269)
289 COG4619 ABC-type uncharacteriz 96.9 0.00095 2.1E-08 54.4 3.3 25 53-77 28-52 (223)
290 cd01131 PilT Pilus retraction 96.9 0.001 2.2E-08 56.1 3.7 24 56-79 3-26 (198)
291 COG2255 RuvB Holliday junction 96.9 0.0011 2.4E-08 58.2 3.9 27 56-82 54-80 (332)
292 TIGR03689 pup_AAA proteasome A 96.9 0.00091 2E-08 64.2 3.6 29 53-81 215-243 (512)
293 PF08477 Miro: Miro-like prote 96.9 0.0011 2.4E-08 50.4 3.5 23 56-78 1-23 (119)
294 PRK13695 putative NTPase; Prov 96.8 0.0011 2.4E-08 54.5 3.7 24 55-78 1-24 (174)
295 PRK08903 DnaA regulatory inact 96.8 0.0018 3.8E-08 55.6 5.1 35 54-88 42-81 (227)
296 COG1219 ClpX ATP-dependent pro 96.8 0.0012 2.7E-08 58.8 4.0 35 53-87 96-130 (408)
297 PF03308 ArgK: ArgK protein; 96.8 0.0011 2.4E-08 57.7 3.7 27 52-78 27-53 (266)
298 COG1116 TauB ABC-type nitrate/ 96.8 0.0011 2.3E-08 57.3 3.6 25 53-77 28-52 (248)
299 PRK10416 signal recognition pa 96.8 0.0013 2.9E-08 59.5 4.4 27 52-78 112-138 (318)
300 TIGR02655 circ_KaiC circadian 96.8 0.0018 3.9E-08 62.1 5.5 88 52-142 261-362 (484)
301 PF03205 MobB: Molybdopterin g 96.8 0.0013 2.8E-08 52.4 3.7 24 55-78 1-24 (140)
302 COG3842 PotA ABC-type spermidi 96.8 0.001 2.3E-08 60.7 3.5 25 53-77 30-54 (352)
303 TIGR01223 Pmev_kin_anim phosph 96.8 0.021 4.5E-07 47.0 10.6 113 56-177 1-134 (182)
304 KOG3062 RNA polymerase II elon 96.8 0.0062 1.3E-07 51.8 7.7 112 55-178 2-122 (281)
305 KOG0734 AAA+-type ATPase conta 96.8 0.0043 9.3E-08 59.0 7.5 34 52-85 335-368 (752)
306 KOG1384 tRNA delta(2)-isopente 96.8 0.0041 8.8E-08 55.7 7.0 36 53-88 6-41 (348)
307 KOG0733 Nuclear AAA ATPase (VC 96.8 0.0044 9.4E-08 59.8 7.6 33 53-85 544-576 (802)
308 PF13191 AAA_16: AAA ATPase do 96.8 0.0012 2.6E-08 54.3 3.5 27 52-78 22-48 (185)
309 PRK14962 DNA polymerase III su 96.8 0.0015 3.2E-08 62.4 4.4 28 53-80 35-62 (472)
310 KOG2004 Mitochondrial ATP-depe 96.8 0.0012 2.6E-08 64.5 3.9 37 50-86 434-472 (906)
311 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0036 7.7E-08 53.8 6.5 25 52-76 18-42 (229)
312 KOG0737 AAA+-type ATPase [Post 96.8 0.00098 2.1E-08 60.4 3.0 35 51-85 124-158 (386)
313 CHL00206 ycf2 Ycf2; Provisiona 96.8 0.0016 3.5E-08 70.0 5.0 39 52-90 1628-1668(2281)
314 KOG0736 Peroxisome assembly fa 96.8 0.0093 2E-07 59.0 9.6 30 56-85 707-736 (953)
315 PF01695 IstB_IS21: IstB-like 96.7 0.0024 5.1E-08 53.0 4.9 39 53-91 46-89 (178)
316 cd01120 RecA-like_NTPases RecA 96.7 0.0013 2.7E-08 52.6 3.1 23 56-78 1-23 (165)
317 COG0378 HypB Ni2+-binding GTPa 96.7 0.0017 3.7E-08 54.0 3.8 34 52-85 10-48 (202)
318 PRK08084 DNA replication initi 96.7 0.0016 3.6E-08 56.4 4.0 33 55-87 46-83 (235)
319 PRK06893 DNA replication initi 96.7 0.002 4.3E-08 55.6 4.5 31 55-85 40-75 (229)
320 KOG1969 DNA replication checkp 96.7 0.0017 3.8E-08 63.5 4.5 31 55-85 327-357 (877)
321 COG4240 Predicted kinase [Gene 96.7 0.002 4.4E-08 54.9 4.3 41 51-91 47-93 (300)
322 COG5192 BMS1 GTP-binding prote 96.7 0.0018 4E-08 61.6 4.5 31 48-78 62-93 (1077)
323 TIGR00763 lon ATP-dependent pr 96.7 0.0018 3.9E-08 65.7 4.8 33 53-85 346-378 (775)
324 cd04163 Era Era subfamily. Er 96.7 0.0015 3.2E-08 52.1 3.4 23 54-76 3-25 (168)
325 PRK06526 transposase; Provisio 96.7 0.002 4.3E-08 56.6 4.4 39 53-91 97-140 (254)
326 PRK11784 tRNA 2-selenouridine 96.7 0.012 2.5E-07 54.0 9.5 108 53-178 140-256 (345)
327 COG1220 HslU ATP-dependent pro 96.7 0.0019 4E-08 58.2 4.0 32 53-84 49-80 (444)
328 PRK10733 hflB ATP-dependent me 96.7 0.017 3.6E-07 57.5 11.2 32 54-85 185-216 (644)
329 cd00544 CobU Adenosylcobinamid 96.7 0.0019 4E-08 53.2 3.7 25 57-81 2-26 (169)
330 cd04155 Arl3 Arl3 subfamily. 96.7 0.0016 3.4E-08 53.0 3.3 26 52-77 12-37 (173)
331 COG2326 Uncharacterized conser 96.7 0.046 1E-06 47.3 12.2 110 51-182 71-203 (270)
332 TIGR03499 FlhF flagellar biosy 96.7 0.0023 5E-08 57.0 4.6 27 52-78 192-218 (282)
333 PRK15455 PrkA family serine pr 96.7 0.0016 3.4E-08 63.0 3.6 28 51-78 100-127 (644)
334 TIGR02655 circ_KaiC circadian 96.6 0.0046 9.9E-08 59.4 6.7 25 52-76 19-43 (484)
335 PRK14086 dnaA chromosomal repl 96.6 0.02 4.2E-07 56.1 11.0 37 57-93 317-360 (617)
336 cd03116 MobB Molybdenum is an 96.6 0.0023 4.9E-08 52.1 3.9 24 55-78 2-25 (159)
337 PHA03138 thymidine kinase; Pro 96.6 0.12 2.6E-06 46.9 15.2 28 51-78 9-36 (340)
338 PF00005 ABC_tran: ABC transpo 96.6 0.0016 3.5E-08 51.0 2.9 26 53-78 10-35 (137)
339 PRK09183 transposase/IS protei 96.6 0.0029 6.3E-08 55.7 4.8 37 53-89 101-142 (259)
340 cd01918 HprK_C HprK/P, the bif 96.6 0.0022 4.9E-08 51.4 3.7 32 54-86 14-45 (149)
341 cd01130 VirB11-like_ATPase Typ 96.6 0.002 4.3E-08 53.7 3.6 26 53-78 24-49 (186)
342 PLN03025 replication factor C 96.6 0.0021 4.5E-08 58.3 4.0 24 56-79 36-59 (319)
343 PF01926 MMR_HSR1: 50S ribosom 96.6 0.0019 4.2E-08 49.2 3.2 21 56-76 1-21 (116)
344 COG1703 ArgK Putative periplas 96.6 0.002 4.4E-08 57.0 3.7 30 49-78 46-75 (323)
345 COG1124 DppF ABC-type dipeptid 96.6 0.0019 4.2E-08 55.5 3.5 25 53-77 32-56 (252)
346 KOG0651 26S proteasome regulat 96.6 0.005 1.1E-07 54.9 6.1 38 52-89 164-203 (388)
347 PRK14961 DNA polymerase III su 96.6 0.0024 5.2E-08 59.0 4.4 29 53-81 37-65 (363)
348 KOG1970 Checkpoint RAD17-RFC c 96.6 0.0021 4.6E-08 61.1 4.1 32 52-83 108-139 (634)
349 KOG0729 26S proteasome regulat 96.6 0.0053 1.1E-07 53.6 6.1 34 52-85 209-242 (435)
350 PRK14956 DNA polymerase III su 96.6 0.0018 3.8E-08 61.5 3.5 28 54-81 40-67 (484)
351 TIGR00073 hypB hydrogenase acc 96.6 0.0023 5E-08 54.3 3.9 28 52-79 20-47 (207)
352 TIGR00176 mobB molybdopterin-g 96.6 0.002 4.4E-08 52.2 3.3 23 56-78 1-23 (155)
353 PRK10646 ADP-binding protein; 96.6 0.003 6.6E-08 50.9 4.3 28 53-80 27-54 (153)
354 PF04665 Pox_A32: Poxvirus A32 96.6 0.002 4.4E-08 55.8 3.4 29 50-78 9-37 (241)
355 TIGR01166 cbiO cobalt transpor 96.6 0.0022 4.7E-08 53.5 3.5 26 53-78 17-42 (190)
356 KOG0727 26S proteasome regulat 96.6 0.0035 7.5E-08 54.3 4.7 41 52-92 187-229 (408)
357 COG1855 ATPase (PilT family) [ 96.6 0.0019 4.1E-08 60.1 3.3 24 55-78 264-287 (604)
358 PRK11034 clpA ATP-dependent Cl 96.6 0.0029 6.2E-08 63.7 4.9 29 56-84 490-518 (758)
359 PRK14490 putative bifunctional 96.6 0.0024 5.2E-08 59.2 4.1 28 52-79 3-30 (369)
360 TIGR00750 lao LAO/AO transport 96.5 0.0028 6.1E-08 57.0 4.4 28 51-78 31-58 (300)
361 PRK12402 replication factor C 96.5 0.0025 5.4E-08 57.9 4.0 24 56-79 38-61 (337)
362 PRK13768 GTPase; Provisional 96.5 0.0025 5.3E-08 56.0 3.8 25 54-78 2-26 (253)
363 KOG1533 Predicted GTPase [Gene 96.5 0.0013 2.8E-08 56.2 1.9 22 57-78 5-26 (290)
364 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0031 6.8E-08 45.6 3.8 30 57-86 2-34 (99)
365 PF01078 Mg_chelatase: Magnesi 96.5 0.0019 4.1E-08 54.6 2.8 24 55-78 23-46 (206)
366 PRK04296 thymidine kinase; Pro 96.5 0.0026 5.6E-08 53.3 3.7 25 54-78 2-26 (190)
367 TIGR00960 3a0501s02 Type II (G 96.5 0.0024 5.1E-08 54.4 3.5 26 53-78 28-53 (216)
368 PRK06645 DNA polymerase III su 96.5 0.0025 5.3E-08 61.3 3.9 30 53-82 42-71 (507)
369 COG0714 MoxR-like ATPases [Gen 96.5 0.0026 5.7E-08 57.9 4.0 29 56-84 45-73 (329)
370 COG0552 FtsY Signal recognitio 96.5 0.018 3.9E-07 51.9 9.1 87 51-141 136-229 (340)
371 cd03292 ABC_FtsE_transporter F 96.5 0.0025 5.4E-08 54.1 3.5 26 53-78 26-51 (214)
372 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0025 5.5E-08 54.3 3.6 26 53-78 29-54 (218)
373 cd03264 ABC_drug_resistance_li 96.5 0.0023 5E-08 54.2 3.3 24 54-78 26-49 (211)
374 PRK08181 transposase; Validate 96.5 0.0044 9.5E-08 54.8 5.1 40 53-92 105-149 (269)
375 PHA02544 44 clamp loader, smal 96.5 0.0034 7.3E-08 56.6 4.5 31 53-83 42-72 (316)
376 PHA02624 large T antigen; Prov 96.5 0.0035 7.6E-08 60.8 4.7 33 53-85 430-462 (647)
377 PRK14722 flhF flagellar biosyn 96.5 0.0029 6.3E-08 58.4 4.0 27 52-78 135-161 (374)
378 PRK07764 DNA polymerase III su 96.5 0.012 2.5E-07 59.9 8.6 28 54-81 37-64 (824)
379 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0028 6.1E-08 53.7 3.6 26 53-78 26-51 (211)
380 PF13479 AAA_24: AAA domain 96.5 0.0023 5.1E-08 54.6 3.1 30 53-85 2-31 (213)
381 COG0541 Ffh Signal recognition 96.4 0.012 2.6E-07 54.8 7.7 111 51-166 97-222 (451)
382 COG1117 PstB ABC-type phosphat 96.4 0.0027 5.9E-08 53.7 3.3 26 53-78 32-57 (253)
383 PF13555 AAA_29: P-loop contai 96.4 0.0034 7.3E-08 42.5 3.1 23 55-77 24-46 (62)
384 COG1120 FepC ABC-type cobalami 96.4 0.0029 6.2E-08 55.4 3.6 26 53-78 27-52 (258)
385 COG3896 Chloramphenicol 3-O-ph 96.4 0.04 8.7E-07 44.4 9.7 128 51-179 20-161 (205)
386 cd03224 ABC_TM1139_LivF_branch 96.4 0.0029 6.3E-08 54.0 3.6 26 53-78 25-50 (222)
387 PRK13341 recombination factor 96.4 0.0037 8E-08 62.7 4.8 34 54-87 52-85 (725)
388 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0028 6.2E-08 52.5 3.4 26 53-78 24-49 (177)
389 cd03269 ABC_putative_ATPase Th 96.4 0.003 6.6E-08 53.5 3.6 26 53-78 25-50 (210)
390 PRK06921 hypothetical protein; 96.4 0.011 2.4E-07 52.3 7.2 39 53-91 116-160 (266)
391 cd03219 ABC_Mj1267_LivG_branch 96.4 0.0028 6E-08 54.7 3.4 26 53-78 25-50 (236)
392 COG1125 OpuBA ABC-type proline 96.4 0.003 6.5E-08 54.8 3.4 26 53-78 26-51 (309)
393 cd03301 ABC_MalK_N The N-termi 96.4 0.0031 6.8E-08 53.5 3.6 26 53-78 25-50 (213)
394 TIGR02673 FtsE cell division A 96.4 0.003 6.6E-08 53.6 3.5 26 53-78 27-52 (214)
395 cd03261 ABC_Org_Solvent_Resist 96.4 0.003 6.6E-08 54.5 3.6 26 53-78 25-50 (235)
396 PRK10787 DNA-binding ATP-depen 96.4 0.0039 8.4E-08 63.2 4.8 32 53-84 348-379 (784)
397 PRK12323 DNA polymerase III su 96.4 0.021 4.6E-07 56.1 9.6 28 53-80 37-64 (700)
398 PRK08727 hypothetical protein; 96.4 0.026 5.7E-07 48.8 9.4 34 56-89 43-81 (233)
399 PF00308 Bac_DnaA: Bacterial d 96.4 0.055 1.2E-06 46.3 11.3 36 57-92 37-79 (219)
400 cd03256 ABC_PhnC_transporter A 96.4 0.0031 6.6E-08 54.6 3.6 26 53-78 26-51 (241)
401 PHA03133 thymidine kinase; Pro 96.4 0.26 5.6E-06 45.1 15.9 27 53-79 39-65 (368)
402 TIGR02211 LolD_lipo_ex lipopro 96.4 0.0031 6.8E-08 53.8 3.6 26 53-78 30-55 (221)
403 TIGR02012 tigrfam_recA protein 96.4 0.0086 1.9E-07 54.2 6.5 39 51-89 52-95 (321)
404 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0031 6.6E-08 53.3 3.5 26 53-78 25-50 (205)
405 KOG0743 AAA+-type ATPase [Post 96.4 0.0027 5.8E-08 59.1 3.3 29 57-85 238-266 (457)
406 cd03262 ABC_HisP_GlnQ_permease 96.4 0.0032 6.9E-08 53.4 3.6 26 53-78 25-50 (213)
407 PRK13541 cytochrome c biogenes 96.4 0.0033 7.1E-08 52.7 3.6 26 53-78 25-50 (195)
408 cd03229 ABC_Class3 This class 96.4 0.0034 7.4E-08 51.8 3.6 26 53-78 25-50 (178)
409 cd03263 ABC_subfamily_A The AB 96.4 0.0033 7.1E-08 53.6 3.6 26 53-78 27-52 (220)
410 cd03259 ABC_Carb_Solutes_like 96.4 0.0034 7.3E-08 53.3 3.6 26 53-78 25-50 (213)
411 cd03235 ABC_Metallic_Cations A 96.4 0.003 6.5E-08 53.6 3.3 26 53-78 24-49 (213)
412 PRK14963 DNA polymerase III su 96.4 0.0033 7.2E-08 60.5 3.9 28 53-80 35-62 (504)
413 cd03265 ABC_DrrA DrrA is the A 96.4 0.0034 7.4E-08 53.6 3.6 26 53-78 25-50 (220)
414 cd03258 ABC_MetN_methionine_tr 96.4 0.0034 7.3E-08 54.1 3.6 26 53-78 30-55 (233)
415 cd03260 ABC_PstB_phosphate_tra 96.4 0.0034 7.5E-08 53.8 3.6 26 53-78 25-50 (227)
416 PF13086 AAA_11: AAA domain; P 96.3 0.0033 7.2E-08 53.4 3.5 23 56-78 19-41 (236)
417 PRK11629 lolD lipoprotein tran 96.3 0.0034 7.4E-08 54.1 3.6 26 53-78 34-59 (233)
418 cd03296 ABC_CysA_sulfate_impor 96.3 0.0034 7.4E-08 54.3 3.6 26 53-78 27-52 (239)
419 cd03247 ABCC_cytochrome_bd The 96.3 0.0036 7.8E-08 51.6 3.6 26 53-78 27-52 (178)
420 PRK14957 DNA polymerase III su 96.3 0.0037 8E-08 60.6 4.1 27 54-80 38-64 (546)
421 TIGR03608 L_ocin_972_ABC putat 96.3 0.0034 7.5E-08 52.9 3.5 26 53-78 23-48 (206)
422 PRK07952 DNA replication prote 96.3 0.0049 1.1E-07 53.7 4.5 36 56-91 101-141 (244)
423 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.0033 7.2E-08 53.7 3.4 26 53-78 29-54 (220)
424 COG0802 Predicted ATPase or ki 96.3 0.0048 1.1E-07 49.2 4.0 29 52-80 23-51 (149)
425 PRK11331 5-methylcytosine-spec 96.3 0.0031 6.7E-08 59.4 3.4 26 54-79 194-219 (459)
426 cd03238 ABC_UvrA The excision 96.3 0.0036 7.8E-08 51.8 3.5 23 53-75 20-42 (176)
427 TIGR02315 ABC_phnC phosphonate 96.3 0.0035 7.5E-08 54.3 3.6 26 53-78 27-52 (243)
428 PRK07940 DNA polymerase III su 96.3 0.052 1.1E-06 50.7 11.5 29 53-81 35-63 (394)
429 cd03230 ABC_DR_subfamily_A Thi 96.3 0.0038 8.3E-08 51.3 3.6 26 53-78 25-50 (173)
430 cd03223 ABCD_peroxisomal_ALDP 96.3 0.0039 8.4E-08 51.0 3.6 26 53-78 26-51 (166)
431 cd03246 ABCC_Protease_Secretio 96.3 0.0039 8.5E-08 51.2 3.6 26 53-78 27-52 (173)
432 PRK00149 dnaA chromosomal repl 96.3 0.033 7.1E-07 53.0 10.3 36 56-91 150-192 (450)
433 cd03257 ABC_NikE_OppD_transpor 96.3 0.0035 7.6E-08 53.7 3.5 26 53-78 30-55 (228)
434 PF06068 TIP49: TIP49 C-termin 96.3 0.0043 9.3E-08 56.7 4.1 32 53-84 49-82 (398)
435 cd00983 recA RecA is a bacter 96.3 0.012 2.7E-07 53.3 7.0 36 52-87 53-93 (325)
436 PRK15177 Vi polysaccharide exp 96.3 0.0037 8E-08 53.3 3.5 26 53-78 12-37 (213)
437 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0038 8.2E-08 54.0 3.6 26 53-78 26-51 (236)
438 PRK10247 putative ABC transpor 96.3 0.0038 8.3E-08 53.6 3.6 26 53-78 32-57 (225)
439 TIGR02639 ClpA ATP-dependent C 96.3 0.0051 1.1E-07 62.1 5.0 36 53-88 482-520 (731)
440 PRK07003 DNA polymerase III su 96.3 0.031 6.6E-07 55.9 10.2 28 54-81 38-65 (830)
441 KOG0991 Replication factor C, 96.3 0.0031 6.8E-08 54.0 2.9 26 53-78 47-72 (333)
442 PRK14949 DNA polymerase III su 96.3 0.0038 8.1E-08 63.3 3.9 29 53-81 37-65 (944)
443 cd03232 ABC_PDR_domain2 The pl 96.3 0.0038 8.2E-08 52.3 3.4 24 53-76 32-55 (192)
444 cd01394 radB RadB. The archaea 96.3 0.0049 1.1E-07 52.5 4.2 35 52-86 17-56 (218)
445 TIGR02525 plasmid_TraJ plasmid 96.3 0.023 5E-07 52.6 8.8 114 56-178 151-272 (372)
446 cd03218 ABC_YhbG The ABC trans 96.3 0.0039 8.5E-08 53.6 3.6 26 53-78 25-50 (232)
447 TIGR01978 sufC FeS assembly AT 96.3 0.0038 8.2E-08 54.1 3.5 25 53-77 25-49 (243)
448 PRK14955 DNA polymerase III su 96.3 0.0037 7.9E-08 58.5 3.6 28 54-81 38-65 (397)
449 cd03268 ABC_BcrA_bacitracin_re 96.3 0.004 8.7E-08 52.6 3.6 26 53-78 25-50 (208)
450 PRK11889 flhF flagellar biosyn 96.3 0.0045 9.7E-08 57.4 4.1 26 53-78 240-265 (436)
451 PRK14250 phosphate ABC transpo 96.3 0.0039 8.4E-08 54.1 3.5 26 53-78 28-53 (241)
452 cd03216 ABC_Carb_Monos_I This 96.3 0.0041 8.9E-08 50.6 3.5 26 53-78 25-50 (163)
453 cd03283 ABC_MutS-like MutS-lik 96.3 0.0037 7.9E-08 52.8 3.3 22 55-76 26-47 (199)
454 cd03114 ArgK-like The function 96.3 0.0038 8.2E-08 50.1 3.2 22 57-78 2-23 (148)
455 cd03215 ABC_Carb_Monos_II This 96.3 0.004 8.7E-08 51.6 3.5 26 53-78 25-50 (182)
456 TIGR02237 recomb_radB DNA repa 96.3 0.005 1.1E-07 52.0 4.1 35 52-86 10-49 (209)
457 KOG1532 GTPase XAB1, interacts 96.3 0.0044 9.5E-08 54.2 3.7 43 49-91 14-61 (366)
458 COG0467 RAD55 RecA-superfamily 96.3 0.0035 7.6E-08 55.1 3.2 34 52-85 21-59 (260)
459 PRK14247 phosphate ABC transpo 96.3 0.004 8.7E-08 54.3 3.6 26 53-78 28-53 (250)
460 smart00173 RAS Ras subfamily o 96.3 0.0041 8.9E-08 50.0 3.4 21 56-76 2-22 (164)
461 TIGR03410 urea_trans_UrtE urea 96.3 0.004 8.7E-08 53.5 3.5 26 53-78 25-50 (230)
462 PRK11124 artP arginine transpo 96.3 0.0041 8.9E-08 53.9 3.6 26 53-78 27-52 (242)
463 TIGR02770 nickel_nikD nickel i 96.3 0.004 8.6E-08 53.6 3.5 26 53-78 11-36 (230)
464 PRK10463 hydrogenase nickel in 96.3 0.005 1.1E-07 54.8 4.1 27 52-78 102-128 (290)
465 PRK13540 cytochrome c biogenes 96.3 0.0043 9.3E-08 52.2 3.6 26 53-78 26-51 (200)
466 PRK11264 putative amino-acid A 96.3 0.0041 9E-08 54.1 3.6 26 53-78 28-53 (250)
467 TIGR02323 CP_lyasePhnK phospho 96.2 0.004 8.7E-08 54.4 3.4 26 53-78 28-53 (253)
468 cd03233 ABC_PDR_domain1 The pl 96.2 0.0039 8.4E-08 52.7 3.3 26 53-78 32-57 (202)
469 PRK11248 tauB taurine transpor 96.2 0.0042 9.1E-08 54.5 3.6 26 53-78 26-51 (255)
470 cd03228 ABCC_MRP_Like The MRP 96.2 0.0046 1E-07 50.7 3.6 26 53-78 27-52 (171)
471 PF01712 dNK: Deoxynucleoside 96.2 0.0047 1E-07 49.4 3.5 22 158-179 68-89 (146)
472 cd04138 H_N_K_Ras_like H-Ras/N 96.2 0.0045 9.8E-08 49.3 3.5 22 55-76 2-23 (162)
473 PRK14960 DNA polymerase III su 96.2 0.0053 1.1E-07 60.4 4.5 28 54-81 37-64 (702)
474 cd03214 ABC_Iron-Siderophores_ 96.2 0.0047 1E-07 51.1 3.6 26 53-78 24-49 (180)
475 smart00175 RAB Rab subfamily o 96.2 0.0042 9.1E-08 49.7 3.2 21 56-76 2-22 (164)
476 cd03234 ABCG_White The White s 96.2 0.0046 9.9E-08 53.1 3.6 27 53-79 32-58 (226)
477 PRK14242 phosphate transporter 96.2 0.0043 9.2E-08 54.2 3.5 25 53-77 31-55 (253)
478 PRK10584 putative ABC transpor 96.2 0.0045 9.8E-08 53.1 3.6 26 53-78 35-60 (228)
479 TIGR02639 ClpA ATP-dependent C 96.2 0.0082 1.8E-07 60.6 5.9 25 54-78 203-227 (731)
480 PRK10908 cell division protein 96.2 0.0046 1E-07 52.9 3.6 26 53-78 27-52 (222)
481 PRK10744 pstB phosphate transp 96.2 0.0044 9.5E-08 54.4 3.5 26 53-78 38-63 (260)
482 PRK14274 phosphate ABC transpo 96.2 0.0045 9.8E-08 54.3 3.6 26 53-78 37-62 (259)
483 cd03250 ABCC_MRP_domain1 Domai 96.2 0.0047 1E-07 52.1 3.6 26 53-78 30-55 (204)
484 PF01443 Viral_helicase1: Vira 96.2 0.0034 7.3E-08 53.8 2.7 22 57-78 1-22 (234)
485 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0046 1E-07 53.2 3.6 26 53-78 27-52 (234)
486 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0047 1E-07 49.2 3.4 26 53-78 25-50 (144)
487 PRK09493 glnQ glutamine ABC tr 96.2 0.0046 1E-07 53.5 3.6 26 53-78 26-51 (240)
488 TIGR01184 ntrCD nitrate transp 96.2 0.0047 1E-07 53.2 3.6 26 53-78 10-35 (230)
489 PRK10771 thiQ thiamine transpo 96.2 0.0046 1E-07 53.3 3.5 26 53-78 24-49 (232)
490 TIGR03598 GTPase_YsxC ribosome 96.2 0.0052 1.1E-07 50.6 3.6 29 49-77 13-41 (179)
491 PRK14493 putative bifunctional 96.2 0.0052 1.1E-07 54.5 3.9 24 55-78 2-25 (274)
492 PF00025 Arf: ADP-ribosylation 96.2 0.0049 1.1E-07 50.8 3.5 25 52-76 12-36 (175)
493 PF02492 cobW: CobW/HypB/UreG, 96.2 0.0048 1E-07 51.1 3.4 22 55-76 1-22 (178)
494 PRK14964 DNA polymerase III su 96.2 0.0055 1.2E-07 58.6 4.2 29 53-81 34-62 (491)
495 cd03298 ABC_ThiQ_thiamine_tran 96.2 0.0049 1.1E-07 52.2 3.6 26 53-78 23-48 (211)
496 cd03254 ABCC_Glucan_exporter_l 96.2 0.0048 1E-07 52.9 3.6 26 53-78 28-53 (229)
497 TIGR00231 small_GTP small GTP- 96.2 0.0051 1.1E-07 48.2 3.5 23 55-77 2-24 (161)
498 TIGR03005 ectoine_ehuA ectoine 96.2 0.0047 1E-07 53.9 3.5 26 53-78 25-50 (252)
499 PRK10895 lipopolysaccharide AB 96.2 0.0049 1.1E-07 53.4 3.6 26 53-78 28-53 (241)
500 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0044 9.4E-08 52.7 3.2 24 55-78 24-47 (214)
No 1
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=1.4e-47 Score=331.60 Aligned_cols=238 Identities=79% Similarity=1.286 Sum_probs=223.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
++..++++|+|+|||||||||+|+.|++.||++||++++++|+++..++++|..++.++.+|.++|++++..++.+++..
T Consensus 24 ~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 24 LAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA 103 (261)
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence 55567788999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 129 GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
......+||||||||++..|++.|+....++.||+|+++.+++++|+.+|++|+.||+.||+..++.++++|.+..++|+
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p 183 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPP 183 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCC
Confidence 52111579999999999999999998888999999999999999999999999999999999888888999999999999
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhhhhhhhcC
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSAAA 287 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~~~~~~~~ 287 (287)
..|+..|+.+|++|.||+++.+++|++.|++...|+.+||.+.+.++.||+++++++|+++|.++|..++ ++|.++++
T Consensus 184 ~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~-~~~~~~~~ 261 (261)
T PLN02459 184 LLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD-EDKRSAAA 261 (261)
T ss_pred CCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh-hhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 88888775
No 2
>PLN02674 adenylate kinase
Probab=100.00 E-value=5.6e-43 Score=301.80 Aligned_cols=204 Identities=31% Similarity=0.575 Sum_probs=189.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
+++++|+|+|||||||||+|++|+++||++||++++++|+++..++++|..+++++.+|..+|++++..++.+++...++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 206 (287)
. .||||||||++..|++.|+.. ..++.+|+|++|.+++++|+.+|++|+.||+.||..
T Consensus 109 ~--~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~--------------- 171 (244)
T PLN02674 109 Q--KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTK--------------- 171 (244)
T ss_pred C--CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccc---------------
Confidence 4 799999999999999988765 359999999999999999999999999999999995
Q ss_pred CCCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 207 APLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 207 ~~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+.||+ .|+++|++|.||+++.+++|++.|++...|+.+||.+.+.++.||+++++++|++.|..+|
T Consensus 172 --~~pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 172 --FAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred --cCCCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 44443 4678999999999999999999999999999999999999999999999999999999876
No 3
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-39 Score=276.88 Aligned_cols=203 Identities=37% Similarity=0.662 Sum_probs=187.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|.|+|+|+|||||||+++.|++.+++.++++++++++.+...++.+..+.+++.+|..+|++++..++.+++..... .
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~--~ 78 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN--N 78 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc--c
Confidence 46889999999999999999999999999999999999998999999999999999999999999999999987654 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc-
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA- 213 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~- 213 (287)
.+|||||||++..|++.|+.......+|+|++|++++++|+.+|++|+.||..||.. ++||+
T Consensus 79 ~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~-----------------~~pp~~ 141 (211)
T PRK14526 79 DNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIY-----------------TLPTKE 141 (211)
T ss_pred CcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCCcccccCCccccc-----------------cCCCCc
Confidence 799999999999999999886554568889999999999999999999999999985 44443
Q ss_pred -----ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 214 -----HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 214 -----~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.|+.+|++|.||+++.+++|++.|++...|+.+||...+.++.||+++++++|+++|.+.|..
T Consensus 142 ~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 142 KGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred cCcCCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 467899999999999999999999999999999999999999999999999999999999874
No 4
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=2.9e-39 Score=277.76 Aligned_cols=214 Identities=38% Similarity=0.742 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh--cc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA--GQ 130 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~--~~ 130 (287)
.|++|+|+|||||||||+|+.|+++||++|+++|+++++.+..++.++..+++++.+|.++|++++..++.+++.. ..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 5678999999999999999999999999999999999999988889999999999999999999999999999987 33
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL 210 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
. ..+|||||||++..|+..++....++++|+|+++.+++++|+.+|++|+.||+.||...+..+ .+.+|+..
T Consensus 85 ~--~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~------~~~~pp~~ 156 (229)
T PTZ00088 85 C--FKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSD------PYDMPPIL 156 (229)
T ss_pred c--CceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccc------cccCCCCC
Confidence 3 479999999999999999988888999999999999999999999999999999998633211 11234444
Q ss_pred CCccc---c--cccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCc-EEEE---eCCCCcccHHHHHHHHh
Q 023080 211 PPAHC---M--SKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGK-LLEF---DLPGGIPESWPKLLEAL 274 (287)
Q Consensus 211 ~p~~~---~--~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~-~~~i---d~~~~~eev~~~I~~~l 274 (287)
|+..| + .+|.+|.||+++.+++|++.|+++..++.+||.+.+. ++.+ |+.+++++|++.|.+.|
T Consensus 157 ~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 229 (229)
T PTZ00088 157 PPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQRL 229 (229)
T ss_pred CCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhhC
Confidence 44333 3 4899999999999999999999999999999999998 8888 79999999999998754
No 5
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=7.7e-39 Score=273.06 Aligned_cols=205 Identities=31% Similarity=0.514 Sum_probs=181.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|||||||||+|++|+++|+++|+++++++|+.+..++++++.+++++.+|..+|++++..++.+++.... .
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~---~ 77 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG---K 77 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC---C
Confidence 4699999999999999999999999999999999999998899999999999999999999999999999998865 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
+||||||||++..|++.|+.. ..|+.+|+|++|.+++++|+.+|++|+.||..|+... +.|+-
T Consensus 78 ~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~------------~~~p~ 145 (223)
T PRK14529 78 NGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIF------------IDAIK 145 (223)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccc------------cCCCc
Confidence 799999999999999998764 3599999999999999999999999999998776641 11111
Q ss_pred CC---CcccccccccCCCCc-HHHHHHHHHHHHhh---chHHHHHHHh-----cCcEEEEeCCCCcccHHHHHHHHh
Q 023080 210 LP---PAHCMSKLITRADDT-EEVVKERLRVYNEK---SQPVEEFYRN-----RGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 210 ~~---p~~~~~~L~~r~~d~-~~~i~~rl~~y~~~---~~~~~~~y~~-----~~~~~~id~~~~~eev~~~I~~~l 274 (287)
.+ -..|+.+|++|.||+ ++.+++|++.|+++ ..++.+||.+ .+.++.||+++++++|+++|.++|
T Consensus 146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 11 134788999999996 78999999999997 4588999996 678999999999999999999876
No 6
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=1.6e-38 Score=271.25 Aligned_cols=206 Identities=45% Similarity=0.804 Sum_probs=185.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|+|+|||||||+|+.|+++||++|++++++++..+...++.+..+.+++.+|..+|++++..++..++...... +.
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~-~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDN-EN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc-CC
Confidence 38899999999999999999999999999999999999888899999999999999999999999999999875433 47
Q ss_pred cEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC-
Q 023080 136 GFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP- 212 (287)
Q Consensus 136 g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p- 212 (287)
+|||||||++..|++.|.... .++.+|+|++|.+++++|+.+|++|+.||..||.. ++||-.+.
T Consensus 80 ~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~-------------~~~p~~~~~ 146 (210)
T TIGR01351 80 GFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLK-------------FNPPKVPGC 146 (210)
T ss_pred cEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccc-------------cCCCccCCc
Confidence 999999999999999998866 48999999999999999999999999999999995 22221111
Q ss_pred -cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 213 -AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 213 -~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
..|+++|+.|.||+.+.+++|++.|++...++.+||.+.+.++.||+++++++|++.|.+.|.
T Consensus 147 ~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 210 (210)
T TIGR01351 147 DDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEALK 210 (210)
T ss_pred CcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhhC
Confidence 236789999999999999999999999999999999999999999999999999999998873
No 7
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=3.6e-37 Score=263.93 Aligned_cols=202 Identities=40% Similarity=0.797 Sum_probs=185.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.||++||++++++++++++.+..+++.+..+.+++.+|..+|++++..++.+++....+.
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~-- 78 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCK-- 78 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCcc--
Confidence 469999999999999999999999999999999999999988999999999999999999999999999999876654
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+|||||||++..|++.++.. ..++.+|+|+++.+++++|+.+|..||.||..||+. +
T Consensus 79 ~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~-----------------~ 141 (215)
T PRK00279 79 NGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVK-----------------F 141 (215)
T ss_pred CCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCccccc-----------------C
Confidence 599999999999999998654 247899999999999999999999999999999995 3
Q ss_pred CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
+||+ .|+.+|..|.||+.+.+++|++.|+++..++.+||...+.++.||+++++++++++|...|.
T Consensus 142 ~~p~~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 142 NPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 4443 35678999999999999999999999999999999999999999999999999999999875
No 8
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-36 Score=241.74 Aligned_cols=186 Identities=33% Similarity=0.619 Sum_probs=171.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc-CCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS-SGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~-~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
...+++|+++|+|||||.|+|..++++||+.|+|++|++|.+... +++.|..+++++++|..+|.+++..++.+++...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~~ 84 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRSS 84 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999999999999999988 8999999999999999999999999999999886
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
... ++|+|||||++.+|+..|++.. .+++++|++|+.+++++|+..|....
T Consensus 85 ~~~--~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~------------------------- 137 (195)
T KOG3079|consen 85 GDS--NGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSN------------------------- 137 (195)
T ss_pred CCC--CeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccC-------------------------
Confidence 553 4699999999999999999865 48999999999999999999996431
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.|.||+.+.+++|++.|++...|+++||+..++++.||+++++++|+.++...+..
T Consensus 138 -------------~R~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 138 -------------SRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred -------------CCCCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 37799999999999999999999999999999999999999999999999988763
No 9
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=2.5e-35 Score=252.53 Aligned_cols=199 Identities=39% Similarity=0.741 Sum_probs=177.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHH-----HcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREEL-----ASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~-----~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
++|+|+|+|||||||+|+.|+++||++|++++++++... ......+. ..+++..|..+|++....++...+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~~ 82 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSDA 82 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999876 22334443 677889999999999999988877542
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+||+||||++..|++.|+....++++|+|++|.+++++|+.+|+.++.||..||.. +
T Consensus 83 -----~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~-----------------~ 140 (215)
T PRK14530 83 -----DGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVE-----------------F 140 (215)
T ss_pred -----CCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccC-----------------C
Confidence 589999999999999999887789999999999999999999999999999999985 3
Q ss_pred CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.||+ .|+.+|+.|.+|+++.+++|+..|+++..++.+||.+.+.++.||++++++++++.|...|..
T Consensus 141 ~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 141 NQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred CCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 3442 466799999999999999999999999999999999988899999999999999999998864
No 10
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.4e-35 Score=245.86 Aligned_cols=213 Identities=46% Similarity=0.751 Sum_probs=193.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
++.+++++|+||+||+|+|.+|++.|++.|++++|++|+.+..+++.+..+++++..|+++|++++..++...+....+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~ 93 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ 93 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999777788887554
Q ss_pred CCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
++|++||||++..|++.+.. ...+|.||.|.+|.+.+.+|+.+|++||.+|+.||.. |+|
T Consensus 94 --~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~-----------------~~p 154 (235)
T KOG3078|consen 94 --KGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLE-----------------FNP 154 (235)
T ss_pred --cccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceeccc-----------------ccC
Confidence 89999999999998877555 5579999999999999999999999999999999986 455
Q ss_pred Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhhhhhhh
Q 023080 212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYEEKQSA 285 (287)
Q Consensus 212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~~~~~~ 285 (287)
|+ ..++.|++|.+|+.+.++.|++.|++...|+.+||...+++..+++.. .++||..|...|.....+..+..
T Consensus 155 Pk~~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~~ 233 (235)
T KOG3078|consen 155 PKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQKE 233 (235)
T ss_pred CccccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhhc
Confidence 53 234669999999999999999999999999999999999999999998 99999999999998876655543
No 11
>PRK13808 adenylate kinase; Provisional
Probab=100.00 E-value=5.4e-34 Score=255.05 Aligned_cols=191 Identities=36% Similarity=0.572 Sum_probs=170.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|||||||||+|++|++.||++||++++++|..+..+++.+..+.+++.+|.++|++++..++.+++...++.
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~-- 78 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAA-- 78 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhccccc--
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.||||||||++..|++.|+... .||++|+|++|++++++|+..|+.+..+
T Consensus 79 ~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~------------------------- 133 (333)
T PRK13808 79 NGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA------------------------- 133 (333)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-------------------------
Confidence 7999999999999999887642 5999999999999999999998643100
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchh
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEY 279 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~ 279 (287)
++ ...|.||+.+.+++|+..|++...|+.+||.+.+.++.||+++++++|+++|...|.....
T Consensus 134 -----rg--~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 134 -----RG--EEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred -----cC--CccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 00 1246788999999999999999999999999988899999999999999999999986554
No 12
>PRK14528 adenylate kinase; Provisional
Probab=100.00 E-value=2.2e-33 Score=235.06 Aligned_cols=180 Identities=36% Similarity=0.645 Sum_probs=165.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|+++||+++++++++++..+..+++.+..+..++..|..+|++++..++.+++....+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~-- 79 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCK-- 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCcc--
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999887554
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+|||||||++..|++.++.. ..+|.+|+|++|++++++|+.+|....
T Consensus 80 ~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~--------------------------- 132 (186)
T PRK14528 80 NGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIE--------------------------- 132 (186)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcccc---------------------------
Confidence 799999999999999988764 359999999999999999999996432
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
.|.||+.+.+++|++.|++...|+.+||...+.++.||+++++++|+..|.+.|
T Consensus 133 -----------gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~~ 186 (186)
T PRK14528 133 -----------GRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKEL 186 (186)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhC
Confidence 567899999999999999999999999999999999999999999999998754
No 13
>PLN02842 nucleotide kinase
Probab=100.00 E-value=2.3e-33 Score=262.12 Aligned_cols=201 Identities=32% Similarity=0.611 Sum_probs=182.6
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCccE
Q 023080 58 VFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGF 137 (287)
Q Consensus 58 vi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g~ 137 (287)
+|+|+|||||||+|++|+++|++.|++++++++.++..++++|..+++++.+|..+|++.+..++.+++.+..+. .+||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~-~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK-EKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcccc-CCcE
Confidence 379999999999999999999999999999999999999999999999999999999999999999999876543 4789
Q ss_pred EEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC--cc
Q 023080 138 ILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP--AH 214 (287)
Q Consensus 138 Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p--~~ 214 (287)
||||||++..|++.|+... .||++|+|+++++++++|+.+|+.|+.||..||.. +.|| +.
T Consensus 80 ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~-----------------~~pP~~~~ 142 (505)
T PLN02842 80 LLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIK-----------------NFPPESEE 142 (505)
T ss_pred EEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccc-----------------cCCCCccc
Confidence 9999999999999888754 59999999999999999999999999999999995 3333 24
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 215 CMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 215 ~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
+..+|.+|.||+++.+++|++.|++...++.++|.. .++.||+++++++|+++|.+.|....
T Consensus 143 ~~~rL~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsqs~EeVfeeI~~iL~~~L 204 (505)
T PLN02842 143 IKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNRPKEVVFEEISSLLSQIQ 204 (505)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999964 58899999999999999999998543
No 14
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=100.00 E-value=8.8e-33 Score=232.55 Aligned_cols=190 Identities=46% Similarity=0.800 Sum_probs=175.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|+|+|||||||+|+.|+++||+.++++++++++.+...++.+..+.+++.+|..++++++..++...+..... ..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~--~~ 78 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDC--KK 78 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccc--cC
Confidence 4899999999999999999999999999999999999888888999999999999999999999999999887542 47
Q ss_pred cEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 136 GFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 136 g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
+||+||||++..|+..+.... .++++|+|++|++++++|+.+|..++.||..||. .+
T Consensus 79 ~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~-------------------~~ 139 (194)
T cd01428 79 GFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL-------------------GK 139 (194)
T ss_pred CEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc-------------------CC
Confidence 999999999999999988765 6899999999999999999999999999999998 24
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPES 266 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev 266 (287)
++.|..+|..|.+|+.+.+++|++.|++...++.+||.+.+.++.||++++++++
T Consensus 140 ~~~~~~~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 140 DDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred CcccCCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 5678888999999999999999999999999999999999999999999999875
No 15
>PRK14531 adenylate kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=230.45 Aligned_cols=175 Identities=43% Similarity=0.736 Sum_probs=160.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|+++||++|+++++++|+.+..+++++..+..++.+|..+|++++..++.+.+.... +
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~---~ 79 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN---S 79 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc---C
Confidence 4799999999999999999999999999999999999999999999999999999999999999999998887642 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+|||||||++..|++.++... .++.+|+|++|++++.+|+..|.
T Consensus 80 ~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~------------------------------ 129 (183)
T PRK14531 80 GGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG------------------------------ 129 (183)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC------------------------------
Confidence 6899999999999999887642 47899999999999999999883
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+.||+.+.+++|++.|++...|+.+||...+.++.||+++++++++.+|.+.|
T Consensus 130 ------------r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 130 ------------RADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 45888999999999999999999999999889999999999999999999876
No 16
>PRK14532 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-32 Score=230.73 Aligned_cols=181 Identities=39% Similarity=0.644 Sum_probs=163.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|.|+|+|+|||||||+|+.||+++|++|+++|+++++.+..+++.+..+++++..|..+|++++..++.+.+....+ +
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~ 78 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA--A 78 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc--c
Confidence 46899999999999999999999999999999999999988889999999999999999999999999998876654 4
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.|||+||||++..|++.++.. ..||.+|+|++|++++++|+.+|..+.
T Consensus 79 ~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~--------------------------- 131 (188)
T PRK14532 79 GGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQ--------------------------- 131 (188)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcC---------------------------
Confidence 799999999999999987643 358999999999999999999885321
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
.|.+++.+.+.+|++.|+....++.++|.+.+.++.||+++++++++++|.+.|.
T Consensus 132 -----------~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 132 -----------GRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred -----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 4668888999999999999999999999988889999999999999999998874
No 17
>PLN02200 adenylate kinase family protein
Probab=100.00 E-value=1.2e-31 Score=231.77 Aligned_cols=186 Identities=28% Similarity=0.564 Sum_probs=167.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
.+..|++|+|+|+|||||||+|+.|+++||++|+++++++|+.+...++.+..+.+.+..|..+|++++..++..++...
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~ 118 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS 118 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence 34567889999999999999999999999999999999999999888889999999999999999999999998888754
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
. ..+|||||||++..|+..+.... .||.+|+|+++++++++|+.+|+.
T Consensus 119 ~---~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~--------------------------- 168 (234)
T PLN02200 119 D---NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ--------------------------- 168 (234)
T ss_pred C---CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC---------------------------
Confidence 3 35899999999999998887653 599999999999999999998852
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
.|.+|+.+.+++|++.|++...++.++|++.+.++.||+++++++|++.|.+.|..+.
T Consensus 169 -------------~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~ 226 (234)
T PLN02200 169 -------------GRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACE 226 (234)
T ss_pred -------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence 2457789999999999999999999999988889999999999999999999988764
No 18
>PRK14527 adenylate kinase; Provisional
Probab=100.00 E-value=1.4e-31 Score=225.22 Aligned_cols=182 Identities=38% Similarity=0.649 Sum_probs=164.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
++.+|+|+|+|||||||+|+.|+++||+.+++++++++.....+++.+..+..++.+|..+|++++..++.+.+...++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~- 83 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP- 83 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence 5678999999999999999999999999999999999999888888999999999999999999999999999887644
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
.+||+||||++..|++.++... .++.+|+|++|.+++++|+.+|....
T Consensus 84 --~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~------------------------- 136 (191)
T PRK14527 84 --VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQE------------------------- 136 (191)
T ss_pred --CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccC-------------------------
Confidence 4799999999999998776532 47789999999999999999986332
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
.|.+|+.+.+++|++.|++...++.+||.+.+.++.||+++++++|+++|...|.
T Consensus 137 -------------~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 191 (191)
T PRK14527 137 -------------GRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKALG 191 (191)
T ss_pred -------------CCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhhC
Confidence 5678899999999999999999999999999999999999999999999998763
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=100.00 E-value=4.1e-31 Score=220.63 Aligned_cols=178 Identities=31% Similarity=0.604 Sum_probs=159.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|+|+|||||||+|+.|++++|++|+++++++++.+..+++.+..+++++.+|..+|++++..++.+++.... ++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~---~~ 77 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG---SK 77 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC---CC
Confidence 478999999999999999999999999999999999998888889999999999999999999999998887653 36
Q ss_pred cEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 136 GFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 136 g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
+|||||||++..|+..+... ..|+.+|+|++|++++++|+..|...
T Consensus 78 ~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~------------------------------ 127 (183)
T TIGR01359 78 KFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS------------------------------ 127 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc------------------------------
Confidence 99999999999999887654 25899999999999999999998531
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
..+.+++.+.+++|++.|.+...++.++|...+.++.||+++++++++++|.+.|
T Consensus 128 --------~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 128 --------SGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred --------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 1345778899999999999999999999998888999999999999999999876
No 20
>PRK02496 adk adenylate kinase; Provisional
Probab=100.00 E-value=6.4e-31 Score=219.84 Aligned_cols=177 Identities=41% Similarity=0.725 Sum_probs=161.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|+++||++++++++++++.+..+++.+..+..++.+|..+|++++..++..++.+.++.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~-- 79 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAA-- 79 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCcc--
Confidence 679999999999999999999999999999999999999888899999999999999999999999999999876554
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+||+||||++..|+..++.. ..|+.+|+|+++.+++.+|+..|.
T Consensus 80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~------------------------------ 129 (184)
T PRK02496 80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG------------------------------ 129 (184)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC------------------------------
Confidence 699999999999998887653 258999999999999999999883
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
+.+|.++.+++|++.|++...++.++|.+.+.++.||+++++++|+++|.+.|.
T Consensus 130 ------------~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 130 ------------RKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAALA 183 (184)
T ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999999988889999999999999999998874
No 21
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=209.65 Aligned_cols=172 Identities=44% Similarity=0.798 Sum_probs=160.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|+++++++|+|++++++......++++..++.++.+|.++|++++..++..++...++. .
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~-~ 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK-A 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc-C
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998776 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
+||+||||++..|++.+++. ...+.++.++++.+.++.|+..|+
T Consensus 80 -~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~------------------------------ 128 (178)
T COG0563 80 -GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRR------------------------------ 128 (178)
T ss_pred -eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCcc------------------------------
Confidence 89999999999999999875 358999999999999999999985
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
.|.||+.+.+++|+..|++...|+.+||. +.||+.++++++++.+.+.+
T Consensus 129 -----------~r~dd~~~~~~~R~~~y~~~~~pli~~y~-----~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 129 -----------VREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred -----------ccccCCHHHHHHHHHHHHhcccchhhhhe-----eeccCCCCHHHHHHHHHHhh
Confidence 25699999999999999999999999997 78999999999999998876
No 22
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.97 E-value=5.4e-29 Score=201.70 Aligned_cols=145 Identities=48% Similarity=0.817 Sum_probs=130.0
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCccEE
Q 023080 59 FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESGFI 138 (287)
Q Consensus 59 i~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g~I 138 (287)
|+|||||||||+|+.||++||++||++++++++.+...+..+..+++++.+|..+|++++..++..++..... .+|||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~--~~g~i 78 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPC--NRGFI 78 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGT--TTEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcc--cceee
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998733 58999
Q ss_pred EeCCCCCHHHHHHHHH-----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080 139 LDGFPRTVKQAEILEE-----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA 213 (287)
Q Consensus 139 ldg~p~~~~~~~~l~~-----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (287)
|||||++..|++.|+. ...|+.+|+|+++.+++.+|+.+
T Consensus 79 ldGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~------------------------------------ 122 (151)
T PF00406_consen 79 LDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ------------------------------------ 122 (151)
T ss_dssp EESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT------------------------------------
T ss_pred eeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc------------------------------------
Confidence 9999999999999988 34589999999999999999964
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcC
Q 023080 214 HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRG 252 (287)
Q Consensus 214 ~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~ 252 (287)
|+.+.+++|++.|+++..++.+||.+.+
T Consensus 123 -----------d~~~~i~~Rl~~y~~~~~~i~~~y~~~g 150 (151)
T PF00406_consen 123 -----------DNEEVIKKRLEEYRENTEPILDYYKEQG 150 (151)
T ss_dssp -----------GSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -----------CCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999875
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.96 E-value=7.3e-28 Score=201.49 Aligned_cols=183 Identities=32% Similarity=0.577 Sum_probs=159.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
..+|+|+|+|||||||+|+.|++++|+.+++++++++..+...+..+..+..++.+|..++.+.+...+...+......
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT- 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc-
Confidence 3478999999999999999999999999999999999987777778888899999999999988888888777654333
Q ss_pred CccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCC
Q 023080 134 ESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPP 212 (287)
Q Consensus 134 ~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p 212 (287)
+.+||+||||++..|+..+... ..|+++|+|++|.+++.+|+.+|...
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~------------------------------- 130 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAET------------------------------- 130 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHccccc-------------------------------
Confidence 5799999999999999888654 46999999999999999999988521
Q ss_pred cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 213 AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 213 ~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
..|.+++.+.+.+|+..|+....++.++|...+.++.||+++++++++++|...|.
T Consensus 131 -------~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 131 -------SGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred -------CCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 13567788999999999999999999999887788999999999999999999885
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.77 E-value=1.1e-16 Score=133.54 Aligned_cols=168 Identities=17% Similarity=0.271 Sum_probs=113.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc-CCc-----hHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS-SGS-----LSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~-~~~-----~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
++|+|+|+|||||||+++ +++++|+++++++|++++.+.. +.+ ++......... +....+...+...+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKE---LGMDAVAKRTVPKIRE 77 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHH---HChHHHHHHHHHHHHh
Confidence 578999999999999987 7889999999999999998743 211 34434333321 2223333444444444
Q ss_pred cccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 129 GQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
. ++..+|+||+ ++..+.+.+..... +..+|++++|.+++.+|+..|..
T Consensus 78 ~---~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~--------------------------- 126 (184)
T PRK01184 78 K---GDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGR--------------------------- 126 (184)
T ss_pred c---CCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCC---------------------------
Confidence 2 1468999999 68888877766543 56899999999999999998741
Q ss_pred CCCCCcccccccccCCCC--cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 208 PLLPPAHCMSKLITRADD--TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d--~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.+| +.+.+.+|.+.... .+..+.+...+ +.|+++++.+++..+|.+.+..
T Consensus 127 ---------------~~d~~~~~~~~~r~~~q~~--~~~~~~~~~ad--~vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 127 ---------------SDDPKSWEELEERDERELS--WGIGEVIALAD--YMIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred ---------------CCChhhHHHHHHHHHHHhc--cCHHHHHHhcC--EEEeCCCCHHHHHHHHHHHHHH
Confidence 122 35556666554322 12334444333 3466788999999999988764
No 25
>PRK13974 thymidylate kinase; Provisional
Probab=99.76 E-value=1.3e-17 Score=142.58 Aligned_cols=177 Identities=17% Similarity=0.202 Sum_probs=119.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee--hhHHHHHHHHcCCchHHHHHHHHhc--CCcccHHHHHHHH--HHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA--TGDLVREELASSGSLSQQLSEIVNQ--GKLVSDEIIFNLL--SKRL 126 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~--~d~llr~~~~~~~~~~~~i~~~l~~--g~~~~~~~~~~~l--~~~l 126 (287)
++.+|+|.|++||||||+++.|++.+.....- ..+.+....+.++++|+.+++++.. |...++.....++ ..+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999998532210 0011111223467889999999863 3333443333333 2221
Q ss_pred H------hcccCCCccEEE-----------eCCCCCHH--HHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCcccc
Q 023080 127 E------AGQAGGESGFIL-----------DGFPRTVK--QAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ 183 (287)
Q Consensus 127 ~------~~~~~~~~g~Il-----------dg~p~~~~--~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~ 183 (287)
. .+... ...+|| +|+|+... +...++.. ..||++|+|++|++++.+|+.+|.
T Consensus 82 ~~~~~~i~~~l~-~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~---- 156 (212)
T PRK13974 82 QHVSKIIRPALE-NGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK---- 156 (212)
T ss_pred HHHHHHHHHHHH-CCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc----
Confidence 1 11111 123555 56776543 34555442 259999999999999999998763
Q ss_pred CCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080 184 CGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGI 263 (287)
Q Consensus 184 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ 263 (287)
+| .+..+...|.+...+...+|.+.+.++.||+++++
T Consensus 157 ----------------------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~ 193 (212)
T PRK13974 157 ----------------------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSI 193 (212)
T ss_pred ----------------------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 22 23456667888888888899888899999999999
Q ss_pred ccHHHHHHHHhccc
Q 023080 264 PESWPKLLEALNLD 277 (287)
Q Consensus 264 eev~~~I~~~l~~~ 277 (287)
++++++|.+.|...
T Consensus 194 eeV~~~I~~~l~~~ 207 (212)
T PRK13974 194 ETISNEIKETLLNN 207 (212)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999753
No 26
>PRK03839 putative kinase; Provisional
Probab=99.75 E-value=2.7e-17 Score=136.94 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|+|||||||+++.|+++++++++++|+++++. .++..... .+ +.....+...+..... +
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~---~~-----~~~~~~l~~~~~~~~~--~ 65 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDD---EM-----EIDFDKLAYFIEEEFK--E 65 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCCh---hh-----hcCHHHHHHHHHHhcc--C
Confidence 46999999999999999999999999999999998752 11111000 01 1123333333333211 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH 214 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~ 214 (287)
.+||+||+... ...++++|+|+++++++.+|+..|...+
T Consensus 66 ~~vIidG~~~~---------l~~~~~vi~L~~~~~~~~~Rl~~R~~~~-------------------------------- 104 (180)
T PRK03839 66 KNVVLDGHLSH---------LLPVDYVIVLRAHPKIIKERLKERGYSK-------------------------------- 104 (180)
T ss_pred CCEEEEecccc---------ccCCCEEEEEECCHHHHHHHHHHcCCCH--------------------------------
Confidence 57999997542 2358899999999999999998774211
Q ss_pred cccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080 215 CMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD 277 (287)
Q Consensus 215 ~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~ 277 (287)
.+..+.+..++ .. ..+.+.|.....++.||++ .++++++.+|.+.|...
T Consensus 105 ---------~~~~~~~~~~~---~~--~~~~~~~~~r~~~~~Id~~~~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 105 ---------KKILENVEAEL---VD--VCLCEALEEKEKVIEVDTTGKTPEEVVEEILELIKSG 154 (180)
T ss_pred ---------HHHHHHHHHHH---HH--HHHHHHHHhcCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence 00011111111 11 1233556666778899996 69999999999998754
No 27
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.74 E-value=9e-17 Score=130.62 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
.+.|+|+|+|||||||+++.||+.++++++|+|.++.+ ..++.+.++++. |+.........++.+.+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~------~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~--- 72 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK------RTGMSIAEIFEEEGEEGFRRLETEVLKELLEED--- 72 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH------HHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcC---
Confidence 35699999999999999999999999999999999988 455777788775 55444444455555544442
Q ss_pred CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+|-.| ...+.+....+...+ .+|||++|.+++++|+...
T Consensus 73 --~~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~ 115 (172)
T COG0703 73 --NAVIATGGGAVLSEENRNLLKKRG---IVVYLDAPFETLYERLQRD 115 (172)
T ss_pred --CeEEECCCccccCHHHHHHHHhCC---eEEEEeCCHHHHHHHhccc
Confidence 2444443 556666666676654 7999999999999999844
No 28
>PRK13973 thymidylate kinase; Provisional
Probab=99.74 E-value=3.4e-16 Score=133.80 Aligned_cols=177 Identities=19% Similarity=0.218 Sum_probs=110.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh--------hHHHHHHHHcC--CchHHHHHHHHhcCCcccHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIAT--------GDLVREELASS--GSLSQQLSEIVNQGKLVSDEIIF 119 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~--------d~llr~~~~~~--~~~~~~i~~~l~~g~~~~~~~~~ 119 (287)
++++|+|.|++||||||++++|+++| |..++.+ ++++|+.+... ...+.....++-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 36899999999999999999999999 8877766 55555544321 11111211111111 1112233
Q ss_pred HHHHHHHHhcccCCCccEEEeCC----------CCC--HHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCcccc
Q 023080 120 NLLSKRLEAGQAGGESGFILDGF----------PRT--VKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ 183 (287)
Q Consensus 120 ~~l~~~l~~~~~~~~~g~Ildg~----------p~~--~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~ 183 (287)
..+...+..+ ..+|.|.| +.. ..+...+... ..||++|+|++|++++++|+.+|....
T Consensus 80 ~~i~~~l~~g-----~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~- 153 (213)
T PRK13973 80 EVIRPALARG-----KIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSD- 153 (213)
T ss_pred HHHHHHHHCC-----CEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCC-
Confidence 3344444432 44566643 322 3355555542 359999999999999999999885211
Q ss_pred CCCccccccccccCCCCCCCccCCCCCCCcccccccccCC-CCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080 184 CGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA-DDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG 262 (287)
Q Consensus 184 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~-~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~ 262 (287)
+. .+. .++.+..+++.+.|.+.. ++| ...++.||++++
T Consensus 154 -----~~------------------------------~~~e~~~~~~~~~~~~~y~~l~----~~~--~~~~~~Ida~~~ 192 (213)
T PRK13973 154 -----TP------------------------------DRFEKEDLAFHEKRREAFLQIA----AQE--PERCVVIDATAS 192 (213)
T ss_pred -----cc------------------------------CchhhchHHHHHHHHHHHHHHH----HhC--CCcEEEEcCCCC
Confidence 00 111 234567777777776633 233 235788999999
Q ss_pred cccHHHHHHHHhccch
Q 023080 263 IPESWPKLLEALNLDE 278 (287)
Q Consensus 263 ~eev~~~I~~~l~~~~ 278 (287)
+++++.+|.++|....
T Consensus 193 ~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 193 PEAVAAEIWAAVDQRL 208 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987543
No 29
>PRK08356 hypothetical protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=134.64 Aligned_cols=118 Identities=15% Similarity=0.236 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC-------chHHH----HHHHHhcCCcccH----HH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG-------SLSQQ----LSEIVNQGKLVSD----EI 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~-------~~~~~----i~~~l~~g~~~~~----~~ 117 (287)
+.++|+|+|||||||||+|+.|+ ++|++++++++.++....... ..+.. ...+++.|..+++ ++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 45789999999999999999996 589999999986654332211 11111 1344555555553 44
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+..++.+.+.. ...|++||+ ++..|++.|... ...+|+|++|.+++.+|+.+|.
T Consensus 83 ~~~~~~~~~~~-----~~~ividG~-r~~~q~~~l~~~--~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 83 LIRLAVDKKRN-----CKNIAIDGV-RSRGEVEAIKRM--GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHHHHHhcc-----CCeEEEcCc-CCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHhcC
Confidence 55555554422 136999999 999999888764 2479999999999999999885
No 30
>PRK06217 hypothetical protein; Validated
Probab=99.70 E-value=6.8e-16 Score=128.87 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|++++|++++++|++++.. .+...+ ...+.+.....+...+.. +
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-----~ 64 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPFT----------TKRPPEERLRLLLEDLRP-----R 64 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCcc----------ccCCHHHHHHHHHHHHhc-----C
Confidence 57999999999999999999999999999999987641 111111 112333344444444432 2
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH 214 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~ 214 (287)
.+||+||++.... .. ....+|.+|||++|.+++++|+.+|...+. |+. . .+
T Consensus 65 ~~~vi~G~~~~~~--~~--~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~~-~~~--~---------------~~------- 115 (183)
T PRK06217 65 EGWVLSGSALGWG--DP--LEPLFDLVVFLTIPPELRLERLRLREFQRY-GNR--I---------------LP------- 115 (183)
T ss_pred CCEEEEccHHHHH--HH--HHhhCCEEEEEECCHHHHHHHHHcCccccc-Ccc--c---------------CC-------
Confidence 5899999876422 21 223478999999999999999999864320 100 0 00
Q ss_pred cccccccCCCCcHHHHHHHHHHHHh------hchHHHHHHHhc-CcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 215 CMSKLITRADDTEEVVKERLRVYNE------KSQPVEEFYRNR-GKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 215 ~~~~L~~r~~d~~~~i~~rl~~y~~------~~~~~~~~y~~~-~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
....+.....+.++...|.. .......++... ..++.+++..+++++.++|...|..
T Consensus 116 -----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 116 -----GGDMHKASLEFLEWAASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred -----CCCHHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 00000111223333333432 111122233322 4677889999999999999998854
No 31
>PRK13949 shikimate kinase; Provisional
Probab=99.69 E-value=1.9e-15 Score=124.51 Aligned_cols=108 Identities=21% Similarity=0.347 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
.|+|+|+|||||||+++.||+.++++++++|.++.... +..+.+++. .|.....+....++.+ +...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~------~~~~~~~~~~~g~~~fr~~e~~~l~~-l~~~----- 70 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF------HKTVGDIFAERGEAVFRELERNMLHE-VAEF----- 70 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH------CccHHHHHHHhCHHHHHHHHHHHHHH-HHhC-----
Confidence 69999999999999999999999999999999887632 233444443 2433333444444444 3221
Q ss_pred ccEEE-e--CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 135 SGFIL-D--GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 135 ~g~Il-d--g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.++|+ + |++....+.+.+.. .+++|||++|.+++++|+..+
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l~~---~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELMNA---SGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHHHh---CCeEEEEECCHHHHHHHHhcC
Confidence 35555 5 35667666666655 358999999999999999753
No 32
>PRK13948 shikimate kinase; Provisional
Probab=99.67 E-value=3.2e-15 Score=124.34 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=78.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLE 127 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~ 127 (287)
...+++..|+|+|++||||||+++.|++++|..++++|.++++. .+..+.+++.. |+....+....++...+.
T Consensus 5 ~~~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~------~g~si~~if~~~Ge~~fR~~E~~~l~~l~~ 78 (182)
T PRK13948 5 EIERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERV------TGKSIPEIFRHLGEAYFRRCEAEVVRRLTR 78 (182)
T ss_pred eccCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHH------HhCCHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 34557788999999999999999999999999999999888773 34455555543 443333444444444332
Q ss_pred hcccCCCccEEEe--CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 128 AGQAGGESGFILD--GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 128 ~~~~~~~~g~Ild--g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
. ...+|.. |.+....+...+.. ...+|||+++++++.+|+..
T Consensus 79 ~-----~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~~e~l~~Rl~~ 122 (182)
T PRK13948 79 L-----DYAVISLGGGTFMHEENRRKLLS---RGPVVVLWASPETIYERTRP 122 (182)
T ss_pred c-----CCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECCHHHHHHHhcC
Confidence 2 1233433 34555555555554 34789999999999999943
No 33
>PRK13975 thymidylate kinase; Provisional
Probab=99.63 E-value=3.2e-14 Score=119.76 Aligned_cols=171 Identities=20% Similarity=0.239 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHH-HHH------H
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLL-SKR------L 126 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l-~~~------l 126 (287)
+++|+|.|++||||||+++.|+++++..+... ...+..+..+++++..+. ........++ ..+ +
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~-~~~~~~~~~f~~~r~~~~~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSK-CDKETLALLFAADRVEHVKEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998533211 112334555556554432 2221111111 111 1
Q ss_pred HhcccCCCccEEEeCCCCC-----------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 127 EAGQAGGESGFILDGFPRT-----------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~~-----------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
... .. ...+|+|.|... ......+.. ...||++|||+++++++.+|+..|..+
T Consensus 73 ~~~-~~-~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~------------- 137 (196)
T PRK13975 73 EED-LK-KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKE------------- 137 (196)
T ss_pred HHH-Hc-CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCcc-------------
Confidence 111 11 246889865432 111112222 235999999999999999999887410
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHH
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEA 273 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~ 273 (287)
..+..+..++..+.|.+... ...|.....++.||++ .++++++++|.+.
T Consensus 138 ----------------------------~~~~~~~~~~~~~~y~~~~~--~~~~~~~~~~~~Id~~~~~~eev~~~I~~~ 187 (196)
T PRK13975 138 ----------------------------IFEKKEFLKKVQEKYLELAN--NEKFMPKYGFIVIDTTNKSIEEVFNEILNK 187 (196)
T ss_pred ----------------------------ccchHHHHHHHHHHHHHHHh--hcccCCcCCEEEEECCCCCHHHHHHHHHHH
Confidence 01223444444555555433 2222223347889985 8999999999998
Q ss_pred hccch
Q 023080 274 LNLDE 278 (287)
Q Consensus 274 l~~~~ 278 (287)
|....
T Consensus 188 i~~~~ 192 (196)
T PRK13975 188 IKDKI 192 (196)
T ss_pred HHHhC
Confidence 86543
No 34
>PRK08233 hypothetical protein; Provisional
Probab=99.63 E-value=7.2e-15 Score=122.03 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
++++|+|.|+|||||||+|+.|++.++ ..++..|.+ +.. .....+...+..+... +......+...+.....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~-~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY-DFD-----NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE-Ecc-----cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 357899999999999999999999996 333433322 110 1112223333333322 22233333333332211
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
.....+|+..+|......+ +. ..+|++|||++|.+++++|+..|...
T Consensus 75 ~~~~~~vivd~~~~~~~~~-~~--~~~d~~i~l~~~~~~~~~R~~~R~~~------------------------------ 121 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLNSE-MR--QFIDVTIFIDTPLDIAMARRILRDFK------------------------------ 121 (182)
T ss_pred CCCceEEEEeeehhhccHH-HH--HHcCEEEEEcCCHHHHHHHHHHHHhh------------------------------
Confidence 1012455544444322211 11 13789999999999999998877411
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHH-HHh--cCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEF-YRN--RGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~-y~~--~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
+++.+.+.+++..|.....+.... +.. ....+.||++.++++++++|...|..
T Consensus 122 ------------~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 122 ------------EDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEELYR 177 (182)
T ss_pred ------------hccccchhhHHHHHHHHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHh
Confidence 111223444566666554443211 111 12356799999999999999998864
No 35
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=6.1e-14 Score=111.64 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|.|.|+|||||||+|+.||++||+++++.+.++|+..+..+..-..+.++-+++-.+. ..+.+.......+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD-~~iD~rq~e~a~~------ 73 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEID-KEIDRRQKELAKE------ 73 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhh-HHHHHHHHHHHHc------
Confidence 579999999999999999999999999999999999987766665566666655543332 2222222222222
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+|++|.-.. |.....+|+.|||.+|.++..+|+..|-
T Consensus 74 ~nvVlegrLA~------Wi~k~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 74 GNVVLEGRLAG------WIVREYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred CCeEEhhhhHH------HHhccccceEEEEeCcHHHHHHHHHHhc
Confidence 57899874211 1112457899999999999999999883
No 36
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.62 E-value=8.5e-15 Score=123.39 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD-------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~-------------- 115 (287)
.+|+|+|++||||||+++.|++ +|++++++|.+.++.+..+++....+.+.+..+. .+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 9999999999999988877777777766664322 2222
Q ss_pred ----HHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080 116 ----EIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN 189 (287)
Q Consensus 116 ----~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~ 189 (287)
.+++..+...+...- .....-+|+|. |.-.+ ..+. ..+|.+|++++|+++.++|+..|.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~-pll~e--~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~---------- 146 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI-PLLFE--NGLE--KLVDRVLVVDAPPETQLERLMARD---------- 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe-hHhhc--CCch--hhCCeEEEEECCHHHHHHHHHHcC----------
Confidence 223333333332211 11013456664 22111 0011 137999999999999999999874
Q ss_pred cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHH
Q 023080 190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPK 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~ 269 (287)
..+.+.+..|+..+.. ..+.-...+ +.|+++++++++..+
T Consensus 147 ----------------------------------~~s~e~~~~ri~~Q~~----~~~~~~~ad--~vI~N~g~~e~l~~q 186 (194)
T PRK00081 147 ----------------------------------GLSEEEAEAIIASQMP----REEKLARAD--DVIDNNGDLEELRKQ 186 (194)
T ss_pred ----------------------------------CCCHHHHHHHHHHhCC----HHHHHHhCC--EEEECCCCHHHHHHH
Confidence 2345667777765432 222222222 568888899999999
Q ss_pred HHHHhc
Q 023080 270 LLEALN 275 (287)
Q Consensus 270 I~~~l~ 275 (287)
+...++
T Consensus 187 v~~i~~ 192 (194)
T PRK00081 187 VERLLQ 192 (194)
T ss_pred HHHHHH
Confidence 988874
No 37
>PRK13946 shikimate kinase; Provisional
Probab=99.62 E-value=2.7e-14 Score=119.30 Aligned_cols=167 Identities=19% Similarity=0.205 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.+..|+|+|++||||||+++.||+++|++++++|.++.... +.... +++.. |.....+....++...+..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~----e~~~~~ge~~~~~~e~~~l~~l~~~--- 79 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIA----EIFAAYGEPEFRDLERRVIARLLKG--- 79 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHH----HHHHHHCHHHHHHHHHHHHHHHHhc---
Confidence 55679999999999999999999999999999988766532 22222 22221 2222222233334333322
Q ss_pred CCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 132 GGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 132 ~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
+..+|.+| .+........+.. -.++|||++|.+++++|+..|...|.
T Consensus 80 --~~~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~rp~-------------------------- 128 (184)
T PRK13946 80 --GPLVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDTRPL-------------------------- 128 (184)
T ss_pred --CCeEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCCCCc--------------------------
Confidence 23455554 3344444444433 35789999999999999987742220
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
.. ..+..+.++..++. ...+|.. ..++......+++++.+.|.+.|....
T Consensus 129 ----------~~-~~~~~~~i~~~~~~-------R~~~y~~-~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 129 ----------LR-TADPKETLARLMEE-------RYPVYAE-ADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred ----------CC-CCChHHHHHHHHHH-------HHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 00 01222333322222 2234655 345445566799999999999887644
No 38
>PLN02924 thymidylate kinase
Probab=99.61 E-value=3.2e-14 Score=121.91 Aligned_cols=174 Identities=20% Similarity=0.191 Sum_probs=105.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHH-HHHHHHHh
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN-LLSKRLEA 128 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~-~l~~~l~~ 128 (287)
+..++++|+|.|++||||||+++.|+++++...+.+ .++++ ...++..|+.+++++..+.........- ....+..+
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~ 89 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK 89 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999997665554 23333 2235678888888887654443332211 11111111
Q ss_pred c-----ccCCCccEEEeCCCCC-----------HHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080 129 G-----QAGGESGFILDGFPRT-----------VKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA 191 (287)
Q Consensus 129 ~-----~~~~~~g~Ildg~p~~-----------~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~ 191 (287)
. ....+..+|+|-|..+ .++...+.. ...||++|||++|++++++|...+. +
T Consensus 90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~-~---------- 158 (220)
T PLN02924 90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG-E---------- 158 (220)
T ss_pred HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc-c----------
Confidence 0 0111467888865432 222222332 2359999999999999999864210 0
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL 271 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~ 271 (287)
+ -+..+..++-.+.|.+.. + ..++.||+++++++|+++|.
T Consensus 159 ------------------------------~-~E~~~~~~rv~~~Y~~la--------~-~~~~vIDa~~sieeV~~~I~ 198 (220)
T PLN02924 159 ------------------------------R-YEKLEFQKKVAKRFQTLR--------D-SSWKIIDASQSIEEVEKKIR 198 (220)
T ss_pred ------------------------------c-cccHHHHHHHHHHHHHHh--------h-cCEEEECCCCCHHHHHHHHH
Confidence 0 112233332222332221 1 34778899999999999999
Q ss_pred HHhcc
Q 023080 272 EALNL 276 (287)
Q Consensus 272 ~~l~~ 276 (287)
+.|..
T Consensus 199 ~~I~~ 203 (220)
T PLN02924 199 EVVLD 203 (220)
T ss_pred HHHHH
Confidence 88864
No 39
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.61 E-value=3.1e-14 Score=117.41 Aligned_cols=108 Identities=20% Similarity=0.226 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
.|+|+|++||||||+++.||+++|+++++.|.++.... +..+.+++... +.+.+...-.+.+.... . .
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~------g~~~~~~~~~~---g~~~~~~~e~~~~~~~~-~--~ 71 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS------NMTVAEIVERE---GWAGFRARESAALEAVT-A--P 71 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh------CCCHHHHHHHH---CHHHHHHHHHHHHHHhc-C--C
Confidence 58889999999999999999999999999988876632 22222333221 11222222222222111 1 2
Q ss_pred cEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 136 GFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 136 g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+|+. | ++........+.. .+++|||++|++++++|+..|
T Consensus 72 ~~vi~~ggg~vl~~~~~~~l~~---~~~~v~l~~~~~~~~~Rl~~r 114 (171)
T PRK03731 72 STVIATGGGIILTEENRHFMRN---NGIVIYLCAPVSVLANRLEAN 114 (171)
T ss_pred CeEEECCCCccCCHHHHHHHHh---CCEEEEEECCHHHHHHHHccc
Confidence 34444 3 3444444444433 568999999999999999876
No 40
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=3.1e-14 Score=119.99 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=107.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC------cccH-------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK------LVSD------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~------~~~~------------- 115 (287)
++|+|+|++||||||+++.|++.+|+++++.|++.++.+..+++....+.+.+..+. .+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 479999999999999999999999999999999999988888888777777664321 1221
Q ss_pred -----HHHHHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 116 -----EIIFNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 116 -----~~~~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
++++..+...+... ......-+|+|. |...+. .+. ..+|.+|++++|.++.++|+..|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~-pll~E~--~~~--~~~D~ii~V~a~~e~r~~Rl~~R~--------- 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI-PLLFEA--KLT--DLCSEIWVVDCSPEQQLQRLIKRD--------- 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe-HHhcCc--chH--hCCCEEEEEECCHHHHHHHHHHcC---------
Confidence 12333333333211 111023455552 221110 011 137999999999999999999884
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~ 268 (287)
.-+.+.+..|++... +....-. ... +.|+++++++++..
T Consensus 148 -----------------------------------g~s~e~~~~ri~~Q~----~~~~k~~-~aD-~vI~N~g~~e~l~~ 186 (195)
T PRK14730 148 -----------------------------------GLTEEEAEARINAQW----PLEEKVK-LAD-VVLDNSGDLEKLYQ 186 (195)
T ss_pred -----------------------------------CCCHHHHHHHHHhCC----CHHHHHh-hCC-EEEECCCCHHHHHH
Confidence 123456666665421 2222222 223 35788889999999
Q ss_pred HHHHHhc
Q 023080 269 KLLEALN 275 (287)
Q Consensus 269 ~I~~~l~ 275 (287)
++.+.+.
T Consensus 187 qv~~~l~ 193 (195)
T PRK14730 187 QVDQLLK 193 (195)
T ss_pred HHHHHHh
Confidence 9988763
No 41
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.61 E-value=8.6e-15 Score=131.40 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+.+|+|.|+|||||||+|+.|++++ +..+++.|++ +..+......+.. .+..++...-.......+...+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~-r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~---- 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL-RQSLFGHGEWGEY--KFTKEKEDLVTKAQEAAALAALKS---- 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH-HHHhcCCCccccc--ccChHHHHHHHHHHHHHHHHHHHc----
Confidence 4678899999999999999999999 8999999665 4433322111100 000000000011222233333332
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhc---Ccc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVM---DID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~---~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
+..+|+|+++.+..+...+.... ... .+|+|+++.+++.+|+.+|..+
T Consensus 75 -g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~--------------------------- 126 (300)
T PHA02530 75 -GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER--------------------------- 126 (300)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC---------------------------
Confidence 46899999999888887665432 233 3689999999999999998422
Q ss_pred CCCCcccccccccCCCCcHHHHH---HHHHHHHhhchHHHHHHHhcCcEEEEeCCCCccc
Q 023080 209 LLPPAHCMSKLITRADDTEEVVK---ERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE 265 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~---~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ee 265 (287)
....+.++ +|++.|.....|+...+.....++.+|.++++.+
T Consensus 127 ---------------~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 127 ---------------AVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred ---------------CCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 22345555 7888888888888777766567788888887765
No 42
>PRK00625 shikimate kinase; Provisional
Probab=99.60 E-value=1.7e-14 Score=119.18 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
+.|+|+|+|||||||+++.||+++|++++++|+++++..... ....+.++++. |.....+.....+.. +. .
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~Ge~~fr~~E~~~l~~-l~----~- 72 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYGEEGFCREEFLALTS-LP----V- 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHCHHHHHHHHHHHHHH-hc----c-
Confidence 469999999999999999999999999999999998744321 11234444443 322222222222222 21 1
Q ss_pred CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...+|.+| .+...+..+.+ .....+|||++|.+++.+|+..|.
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~l---~~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAHI---RNRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred CCeEEECCCCccCCHHHHHHH---hcCCEEEEEECCHHHHHHHHhcCC
Confidence 23455454 33444333333 234579999999999999999874
No 43
>PRK13947 shikimate kinase; Provisional
Probab=99.60 E-value=3.6e-14 Score=116.88 Aligned_cols=109 Identities=21% Similarity=0.281 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCCC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
.|+|+|+|||||||+|+.||+.+|+++++.|.+++.. .|..+.+++.. |.....+....++.. +...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~------~g~~~~~~~~~~ge~~~~~~e~~~~~~-l~~~----- 70 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM------TGMTVAEIFEKDGEVRFRSEEKLLVKK-LARL----- 70 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh------cCCcHHHHHHHhChHHHHHHHHHHHHH-Hhhc-----
Confidence 5999999999999999999999999999999887663 22233333332 222212222222322 2221
Q ss_pred ccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 135 SGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 135 ~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+|+. | ++........+.. .+++|||+++++.+.+|+..|.
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~l~~---~~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQLRK---NGVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CCeEEECCCCCcCCHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCC
Confidence 233333 2 3444444444443 3579999999999999998764
No 44
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.60 E-value=3.8e-14 Score=119.92 Aligned_cols=178 Identities=20% Similarity=0.235 Sum_probs=108.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-CcccHHHHHHHH-HHHHHh--
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-KLVSDEIIFNLL-SKRLEA-- 128 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-~~~~~~~~~~~l-~~~l~~-- 128 (287)
++++|+|.|+.||||||+++.|++++.-..+++ -+.+ .+.++++++.+++++.++ ..+......-++ ..+..+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~tr--EP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTR--EPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEe--CCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999984443322 1222 256678899999988876 334333322222 111111
Q ss_pred ----cccCCCccEEEeCCCC------------CHHHHHHHHHh-c---CccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 129 ----GQAGGESGFILDGFPR------------TVKQAEILEEV-M---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 129 ----~~~~~~~g~Ildg~p~------------~~~~~~~l~~~-~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
+....+..+|+|-|.. ..++...+... . .||++|||++|+++.++|+.+|+...
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~------ 152 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELR------ 152 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc------
Confidence 1111145677775432 22333333333 2 49999999999999999999985310
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
.+-+. ..+..++..+.|.+ +.+.+. ..+++||++.+++++.
T Consensus 153 --------------------------------~r~E~~~~~f~~kvr~~Y~~----la~~~~--~r~~vIda~~~~e~v~ 194 (208)
T COG0125 153 --------------------------------DRFEKEDDEFLEKVREGYLE----LAAKFP--ERIIVIDASRPLEEVH 194 (208)
T ss_pred --------------------------------chhhhHHHHHHHHHHHHHHH----HHhhCC--CeEEEEECCCCHHHHH
Confidence 00011 11223333333333 222222 2488999999999999
Q ss_pred HHHHHHhccc
Q 023080 268 PKLLEALNLD 277 (287)
Q Consensus 268 ~~I~~~l~~~ 277 (287)
.+|..+|..-
T Consensus 195 ~~i~~~l~~~ 204 (208)
T COG0125 195 EEILKILKER 204 (208)
T ss_pred HHHHHHHHHh
Confidence 9999888753
No 45
>PRK04040 adenylate kinase; Provisional
Probab=99.59 E-value=1.9e-13 Score=114.49 Aligned_cols=175 Identities=21% Similarity=0.237 Sum_probs=104.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCch--HHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSL--SQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~--~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
|++|+|+|+|||||||+++.|++++ ++.+++.++++++.....+.. ...+... ......-+..+....+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l----~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKL----PPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhC----ChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 899999999988766544321 1122111 1011111222333333332
Q ss_pred ccCCCccEEEeCCCC--C------HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080 130 QAGGESGFILDGFPR--T------VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN 201 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~--~------~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 201 (287)
. . +..+|+||+.. + --....+.. ..||.+|+|.++++++++|..+.. .
T Consensus 78 ~-~-~~~~~~~~h~~i~~~~g~~~~~~~~~~~~-l~pd~ii~l~a~p~~i~~Rrl~d~-~-------------------- 133 (188)
T PRK04040 78 A-G-EGPVIVDTHATIKTPAGYLPGLPEWVLEE-LNPDVIVLIEADPDEILMRRLRDE-T-------------------- 133 (188)
T ss_pred h-c-CCCEEEeeeeeeccCCCCcCCCCHHHHhh-cCCCEEEEEeCCHHHHHHHHhccc-c--------------------
Confidence 1 1 24599998431 1 011222333 369999999999999999887520 0
Q ss_pred CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
-.|..++.+.++.+++........ ..++.....++.+|-++.+++.+++|..+|.
T Consensus 134 ------------------R~R~~es~e~I~~~~~~a~~~a~~-~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii~ 188 (188)
T PRK04040 134 ------------------RRRDVETEEDIEEHQEMNRAAAMA-YAVLTGATVKIVENREGLLEEAAEEIVEVLR 188 (188)
T ss_pred ------------------cCCCCCCHHHHHHHHHHHHHHHHH-HHHhcCCeEEEEECCCCCHHHHHHHHHHHhC
Confidence 024456677777666654442211 1112222334445544459999999988763
No 46
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.57 E-value=1.2e-13 Score=114.28 Aligned_cols=112 Identities=15% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
++..|+|+|++||||||+++.|++.+|++++++|..+.... +..+..++. .|.....+....++.. +...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~------g~~i~~~~~~~g~~~fr~~e~~~l~~-l~~~-- 73 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GADIGWVFDVEGEEGFRDREEKVINE-LTEK-- 73 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh------CcCHhHHHHHhCHHHHHHHHHHHHHH-HHhC--
Confidence 35579999999999999999999999999999988766532 112222222 1221111222233333 2221
Q ss_pred CCCccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 132 GGESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 132 ~~~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.++|+. | .+.+......|.. .+.+|||++|.+++++|+..+.
T Consensus 74 ---~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~~e~~~~Ri~~~~ 118 (172)
T PRK05057 74 ---QGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDK 118 (172)
T ss_pred ---CCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCC
Confidence 245554 2 3344444444544 4589999999999999997654
No 47
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.57 E-value=8.5e-14 Score=117.87 Aligned_cols=172 Identities=21% Similarity=0.262 Sum_probs=97.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhc--CCcccHHHHHHHHHHH--
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQ--GKLVSDEIIFNLLSKR-- 125 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~--g~~~~~~~~~~~l~~~-- 125 (287)
++++|+|.|++||||||+++.|++.++. .++.+ ++ ..+...++.+...+.. ....+.......+..+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~----~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFT----RE--PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEe----eC--CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999998732 22211 11 1234456666666652 2222222111111111
Q ss_pred -----HHhcccCCCccEEEeCCCCC------------HHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080 126 -----LEAGQAGGESGFILDGFPRT------------VKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC 184 (287)
Q Consensus 126 -----l~~~~~~~~~g~Ildg~p~~------------~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~ 184 (287)
+...... +..+|+|-++.+ ..+...+... ..||++|||++|++++.+|+.+|+..
T Consensus 76 ~~~~~i~~~l~~-g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~--- 151 (205)
T PRK00698 76 HLEEVIKPALAR-GKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL--- 151 (205)
T ss_pred HHHHHHHHHHHC-CCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence 1111111 457888843221 2233333332 35999999999999999999988510
Q ss_pred CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080 185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR-VYNEKSQPVEEFYRNRGKLLEFDLPGGI 263 (287)
Q Consensus 185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~-~y~~~~~~~~~~y~~~~~~~~id~~~~~ 263 (287)
.+.+.....+..++. .|.. +.+.+ ...++.||+++++
T Consensus 152 ------------------------------------~~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~Id~~~~~ 189 (205)
T PRK00698 152 ------------------------------------DRIEQEGLDFFERVREGYLE----LAEKE--PERIVVIDASQSL 189 (205)
T ss_pred ------------------------------------chhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCH
Confidence 000111112223333 2332 22211 2357889999999
Q ss_pred ccHHHHHHHHhcc
Q 023080 264 PESWPKLLEALNL 276 (287)
Q Consensus 264 eev~~~I~~~l~~ 276 (287)
++++++|.+.|..
T Consensus 190 e~v~~~i~~~i~~ 202 (205)
T PRK00698 190 EEVHEDILAVIKA 202 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988864
No 48
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.57 E-value=1.2e-13 Score=113.77 Aligned_cols=114 Identities=25% Similarity=0.299 Sum_probs=69.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
.+++.|+|+|+|||||||+|+.|++.+|+++++.|++++.... ... .+.+. .|.....+.....+......
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~----~~~~~~~g~~~~~~~~~~~~~~l~~~-- 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSI----PEIFEEEGEAAFRELEEEVLAELLAR-- 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCH----HHHHHHHCHHHHHHHHHHHHHHHHhc--
Confidence 3567899999999999999999999999999999888766321 122 22222 12211112222333333321
Q ss_pred cCCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 131 AGGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 131 ~~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...+|..| +.........+. ....+|||++|.+++.+|+..|.
T Consensus 74 ---~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 ---HNLVISTGGGAVLREENRALLR---ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred ---CCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECCHHHHHHHhcCCC
Confidence 12344444 222222233332 23578999999999999998764
No 49
>PRK04182 cytidylate kinase; Provisional
Probab=99.56 E-value=2.4e-13 Score=112.57 Aligned_cols=113 Identities=24% Similarity=0.282 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|++||||||+|+.|++++|+++++++++++......+.....+... +...+. +...+...+...... +
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~-~ 74 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPE--IDKEIDRRQLEIAEK-E 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCch--HHHHHHHHHHHHHhc-C
Confidence 4799999999999999999999999999999998888655433322222222 221111 111122212111101 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.++|++|.-... .+. ..++++|||++|.+++++|+..|.
T Consensus 75 ~~~Vi~g~~~~~----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 75 DNVVLEGRLAGW----MAK--DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CCEEEEEeecce----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence 578999742211 011 126789999999999999998874
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=99.56 E-value=2.2e-14 Score=118.04 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=72.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|++.++++++++|++++.. .....+++....++...+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~------ 59 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE------ 59 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC------
Confidence 47999999999999999999999999999998887530 01223344444444443432
Q ss_pred ccEEEeCCCC-CHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080 135 SGFILDGFPR-TVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 135 ~g~Ildg~p~-~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
.+||+||.+. +.. ..+ ..+|.+|||++|.++++.|+.+|..
T Consensus 60 ~~wVidG~~~~~~~--~~l---~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 60 DEWIIDGNYGGTMD--IRL---NAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred CCEEEeCCcchHHH--HHH---HhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4799999544 432 122 2489999999999999999998864
No 51
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.56 E-value=9.2e-14 Score=118.36 Aligned_cols=169 Identities=12% Similarity=0.162 Sum_probs=106.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc--------CC-cccH-------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ--------GK-LVSD------- 115 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~--------g~-~~~~------- 115 (287)
..++.|.|+|++||||||+++.|++ +|+++++.|.+.++....++.....+...+.. |. .+..
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 3567899999999999999999997 89999999988888665544333333333211 11 0111
Q ss_pred -----------HHHHHHHHHH----HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080 116 -----------EIIFNLLSKR----LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 116 -----------~~~~~~l~~~----l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
.+++..+... +...... +..+++-+.|.-.+. .+ ...+|.+|++++|.+++++|+..|.
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~-~~~vvv~e~pLL~e~--~~--~~~~d~ii~V~a~~e~~~~Rl~~R~- 155 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDRAARR-GKRILVKEAAILFES--GG--DAGLDFIVVVAADTELRLERAVQRG- 155 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhc-CCCEEEEEeeeeeec--Cc--hhcCCeEEEEECCHHHHHHHHHHcC-
Confidence 1122222222 2221111 224444344432110 01 1237999999999999999999984
Q ss_pred cccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC
Q 023080 181 CSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP 260 (287)
Q Consensus 181 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~ 260 (287)
..+.+.+.+|++.+......+ ... . +.|+++
T Consensus 156 -------------------------------------------~~s~e~~~~Ri~~q~~~~~~~----~~a-d-~vI~N~ 186 (208)
T PRK14731 156 -------------------------------------------MGSREEIRRRIAAQWPQEKLI----ERA-D-YVIYNN 186 (208)
T ss_pred -------------------------------------------CCCHHHHHHHHHHcCChHHHH----HhC-C-EEEECC
Confidence 235678888888765544433 122 2 457888
Q ss_pred CCcccHHHHHHHHhcc
Q 023080 261 GGIPESWPKLLEALNL 276 (287)
Q Consensus 261 ~~~eev~~~I~~~l~~ 276 (287)
++++++..+|.+.+..
T Consensus 187 g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 187 GTLDELKAQTEQLYQV 202 (208)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988753
No 52
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.55 E-value=7.6e-14 Score=117.42 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=67.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhcCC--cccHHHHH--------H
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQGK--LVSDEIIF--------N 120 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~--~~~~~~~~--------~ 120 (287)
+++|+|.|++||||||+++.|++.++. .++-+ . ...+++.+..+.+++..+. ........ .
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~----~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT----R--EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE----e--CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999999854 23211 0 1123345556666543221 12211110 1
Q ss_pred HHHHHHHhcccCCCccEEEeCC----------CCCH--HHHHHHHH-hcC--ccEEEEEecCHHHHHHHHhCCC
Q 023080 121 LLSKRLEAGQAGGESGFILDGF----------PRTV--KQAEILEE-VMD--IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 121 ~l~~~l~~~~~~~~~g~Ildg~----------p~~~--~~~~~l~~-~~~--~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+...+...... +..+|+|.+ +++. .+...+.. ... ||++|||+++++++++|+..|.
T Consensus 77 ~~~~~i~~~l~~-~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 77 HLEDKIKPALAE-GKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHhC-CCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111112111111 346778843 2221 22223322 223 9999999999999999998874
No 53
>PLN02199 shikimate kinase
Probab=99.55 E-value=2.7e-13 Score=119.40 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.+..|+|+|++||||||+++.||+.+|++++++|.++++... +..+.+++.. |+....+.....+.+....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-----G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~--- 172 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-----GTSVAEIFVHHGENFFRGKETDALKKLSSR--- 172 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-----CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc---
Confidence 456799999999999999999999999999999999988532 3344555543 4434344444444443222
Q ss_pred CCCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 132 GGESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 132 ~~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
...+|-.| .+........+. -..+|||+++.+++.+|+..
T Consensus 173 --~~~VIStGGG~V~~~~n~~~L~----~G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 173 --YQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAA 214 (303)
T ss_pred --CCEEEECCCcccCCHHHHHHHh----CCeEEEEECCHHHHHHHHhh
Confidence 12344343 444555455453 24799999999999999985
No 54
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.55 E-value=8.1e-13 Score=108.56 Aligned_cols=113 Identities=22% Similarity=0.201 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|.|++||||||+|+.|++++|+++++.+++++......+.....+......+. .+...+...+...... +
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~-~ 74 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALK-E 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhc-C
Confidence 479999999999999999999999999999999888765433222222222222221 1122222222221111 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+|++|...... + ...++++|+|++|.++..+|+..|.
T Consensus 75 ~~~Vi~g~~~~~~----~--~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 75 KNVVLESRLAGWI----V--REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CCEEEEeccccee----e--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 5789998543211 1 1237899999999999999999874
No 55
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=4.2e-13 Score=113.53 Aligned_cols=165 Identities=18% Similarity=0.216 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD------------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~------------------- 115 (287)
+.|.|+|++||||||+++.|++ +|+++++.|++.++.+..++.....+.+.+..+...++
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4689999999999999999997 89999999999999888888777777777755433221
Q ss_pred ----HHHHHHHHHHHH----hcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080 116 ----EIIFNLLSKRLE----AGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN 187 (287)
Q Consensus 116 ----~~~~~~l~~~l~----~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~ 187 (287)
.+++..+...+. .....+...++++ .|.-.+. .+ ...+|.+|++++|.++.++|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e-~plL~e~--g~--~~~~D~vi~V~a~~e~ri~Rl~~R~-------- 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYD-MPLLVEK--GL--DRKMDLVVVVDVDVEERVRRLVEKR-------- 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEE-eeceeEc--Cc--cccCCeEEEEECCHHHHHHHHHHcC--------
Confidence 112222222221 1100101233443 2221110 00 0137899999999999999998873
Q ss_pred cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
.-+.+.+..|++.+.... .... ... +.|+++++++++.
T Consensus 148 ------------------------------------g~s~e~~~~ri~~Q~~~~----~k~~-~ad-~vI~N~g~~e~l~ 185 (200)
T PRK14734 148 ------------------------------------GLDEDDARRRIAAQIPDD----VRLK-AAD-IVVDNNGTREQLL 185 (200)
T ss_pred ------------------------------------CCCHHHHHHHHHhcCCHH----HHHH-hCC-EEEECcCCHHHHH
Confidence 123466776776654431 1122 222 4688999999999
Q ss_pred HHHHHHhc
Q 023080 268 PKLLEALN 275 (287)
Q Consensus 268 ~~I~~~l~ 275 (287)
.++..+++
T Consensus 186 ~~v~~~~~ 193 (200)
T PRK14734 186 AQVDGLIA 193 (200)
T ss_pred HHHHHHHH
Confidence 99998774
No 56
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.54 E-value=6.5e-13 Score=111.50 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHHH-------HH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEIIF-------NL 121 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~~-------~~ 121 (287)
++|+|.|++||||||+++.|++.+ |..++.+.. ...+..+..++.++..+. ..+..... ..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 579999999999999999999998 555544421 122234555555554321 11111110 11
Q ss_pred HHHHHHhcccCCCccEEEeCCCCC------------HHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080 122 LSKRLEAGQAGGESGFILDGFPRT------------VKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG 185 (287)
Q Consensus 122 l~~~l~~~~~~~~~g~Ildg~p~~------------~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g 185 (287)
+.+.+...... +..+|+|.++.+ ..+...+.. ...|+.+|||+++++++.+|+.+|....
T Consensus 75 ~~~~~~~~~~~-~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPALAR-GKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHHHhC-CCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcc---
Confidence 11111111111 467888843311 122233322 1258999999999999999999885211
Q ss_pred CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCccc
Q 023080 186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPE 265 (287)
Q Consensus 186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ee 265 (287)
...+...+..++....|.. +...+ ...++.||++.++++
T Consensus 151 -----------------------------------~~~~~~~~~~~~~~~~y~~----~~~~~--~~~~~~id~~~~~e~ 189 (200)
T cd01672 151 -----------------------------------RDEQEGLEFHERVREGYLE----LAAQE--PERIIVIDASQPLEE 189 (200)
T ss_pred -----------------------------------hhhhhhHHHHHHHHHHHHH----HHHhC--CCeEEEEeCCCCHHH
Confidence 0001112222222222222 22222 235789999999999
Q ss_pred HHHHHHHHhc
Q 023080 266 SWPKLLEALN 275 (287)
Q Consensus 266 v~~~I~~~l~ 275 (287)
++++|.+.|.
T Consensus 190 i~~~i~~~i~ 199 (200)
T cd01672 190 VLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 57
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.53 E-value=2.4e-13 Score=131.18 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=83.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
.|..+|+|+|+|||||||+++.||+++|++++|+|+.+.+ ..|..+.+++. .|+....+...+.+.+.+...
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~------~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~- 76 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER------EIGMSIPSYFEEYGEPAFREVEADVVADMLEDF- 76 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH------HHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4667899999999999999999999999999999999887 34566777774 455555555555555543321
Q ss_pred cCCCccEEEeC--CCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCC
Q 023080 131 AGGESGFILDG--FPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 131 ~~~~~g~Ildg--~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+|-.| .+...+....|..+. .-..+|||+++.+++.+|+..+
T Consensus 77 ----~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 77 ----DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred ----CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence 2344343 455555555554322 2348999999999999999754
No 58
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.53 E-value=5.9e-13 Score=108.85 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=89.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH-----HHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE-----ELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~-----~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
|+|+|++||||||+++.|++.++..+++.|++... .....+.........+ ..+...+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~-- 70 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWL--------QNLNDASTAAAAKN-- 70 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHH--------HHHHHHHHHHHhcC--
Confidence 57899999999999999999999999999887422 1111100000000000 01112222222222
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
...|+|...........+...+..-.+|||++|.+++.+|+..|..+
T Consensus 71 ---~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------------ 117 (163)
T TIGR01313 71 ---KVGIITCSALKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGH------------------------------ 117 (163)
T ss_pred ---CCEEEEecccHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCC------------------------------
Confidence 23355543333344444443332334699999999999999988411
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
....+.+..++..+.. +. +.+ ..++.||++++++++.++|.+.|
T Consensus 118 ------------~~~~~~i~~~~~~~~~---~~---~~e-~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 118 ------------FMKADMLESQFAALEE---PL---ADE-TDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred ------------CCCHHHHHHHHHHhCC---CC---CCC-CceEEEECCCCHHHHHHHHHHHH
Confidence 0113445544443321 10 111 24789999999999999988765
No 59
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.52 E-value=4.6e-13 Score=108.04 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|.|+|+|.||+||||+|+.|+ .+|+.+++..+++.+.- +.....+. .....+..+.+...+...+. .
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~-----~~~~~de~-r~s~~vD~d~~~~~le~~~~------~ 67 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG-----LYTEYDEL-RKSVIVDVDKLRKRLEELLR------E 67 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC-----CeeccCCc-cceEEeeHHHHHHHHHHHhc------c
Confidence 579999999999999999999 89999999988876621 00000000 00011222223333333331 2
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcc
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAH 214 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~ 214 (287)
.+.|+|+....+ +..+|+||.|.++++++.+||++|+.++
T Consensus 68 ~~~Ivd~H~~hl--------~~~~dlVvVLR~~p~~L~~RLk~RGy~~-------------------------------- 107 (180)
T COG1936 68 GSGIVDSHLSHL--------LPDCDLVVVLRADPEVLYERLKGRGYSE-------------------------------- 107 (180)
T ss_pred CCeEeechhhhc--------CCCCCEEEEEcCCHHHHHHHHHHcCCCH--------------------------------
Confidence 578898753221 1138999999999999999999997432
Q ss_pred cccccccCCCCcHHHHHHHHHH--HHhhchHHHHHHHhcCcEEEEeC-CCCcccHHHHHHHHhcc
Q 023080 215 CMSKLITRADDTEEVVKERLRV--YNEKSQPVEEFYRNRGKLLEFDL-PGGIPESWPKLLEALNL 276 (287)
Q Consensus 215 ~~~~L~~r~~d~~~~i~~rl~~--y~~~~~~~~~~y~~~~~~~~id~-~~~~eev~~~I~~~l~~ 276 (287)
+.+.+-++. .--......+.+ ..++.||. +.+++++.+.|..+++.
T Consensus 108 -------------eKI~ENveAEi~~vi~~EA~E~~---~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 108 -------------EKILENVEAEILDVILIEAVERF---EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 222222111 111111222233 45788885 57999999999999984
No 60
>PRK06762 hypothetical protein; Provisional
Probab=99.52 E-value=4.9e-13 Score=109.68 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
|++|+|+|+|||||||+|+.|++++ ++.+++.|.+ +..+..... ..+. ...+.+.......+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~-r~~l~~~~~---------~~~~-~~~~~~~~~~~~~~~~--- 67 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV-RRDMLRVKD---------GPGN-LSIDLIEQLVRYGLGH--- 67 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH-HHHhccccC---------CCCC-cCHHHHHHHHHHHHhC---
Confidence 5789999999999999999999999 5667777554 432221100 0011 1122222333332222
Q ss_pred CCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
+..+|+|+..........+.. ...+..+|||++|.+++++|...|...
T Consensus 68 --g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-------------------------- 119 (166)
T PRK06762 68 --CEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-------------------------- 119 (166)
T ss_pred --CCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc--------------------------
Confidence 357899987544433333332 233678999999999999999988421
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
. .-..+.++.+++.. ..+ + ..+ .+.++.+.+++++.++|...+..
T Consensus 120 --------------~-~~~~~~l~~~~~~~----~~~---~-~~~-~~~~~~~~~~~~v~~~i~~~~~~ 164 (166)
T PRK06762 120 --------------H-EFGEDDMRRWWNPH----DTL---G-VIG-ETIFTDNLSLKDIFDAILTDIGL 164 (166)
T ss_pred --------------c-cCCHHHHHHHHhhc----CCc---C-CCC-eEEecCCCCHHHHHHHHHHHhcc
Confidence 0 11345555444332 211 1 122 35566678999999999988764
No 61
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.52 E-value=6.8e-13 Score=111.81 Aligned_cols=165 Identities=22% Similarity=0.278 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----cc--------------
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL-----VS-------------- 114 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----~~-------------- 114 (287)
++.|.|+|.+||||||+++.+++ +|++++++|+++|+...++++....+.+.+..... +.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 56899999999999999999999 99999999999999888877666666655542221 11
Q ss_pred ----HHHHHHHHHHHHH-hcccCCCccEEEeCCCCCHHHHHHHHHh-c--CccEEEEEecCHHHHHHHHhCCCccccCCC
Q 023080 115 ----DEIIFNLLSKRLE-AGQAGGESGFILDGFPRTVKQAEILEEV-M--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGG 186 (287)
Q Consensus 115 ----~~~~~~~l~~~l~-~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~ 186 (287)
..+.+.++...+. ..... ..++++--.| .|... + .+|.||.+++|+++.++|+++|.
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~-~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~------- 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGA-RSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD------- 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHh-hCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcC-------
Confidence 1222333333221 10111 1123332222 22222 2 27899999999999999999984
Q ss_pred ccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080 187 NFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPES 266 (287)
Q Consensus 187 ~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev 266 (287)
..+.+.+..++.......+ .+...+ +.++++++++.+
T Consensus 146 -------------------------------------~~~~e~~~~~~~~Q~~~~e----k~~~ad--~vi~n~~~i~~l 182 (201)
T COG0237 146 -------------------------------------GLDEEDAEARLASQRDLEE----KLALAD--VVIDNDGSIENL 182 (201)
T ss_pred -------------------------------------CCCHHHHHHHHHhcCCHHH----HHhhcC--ChhhcCCCHHHH
Confidence 3456666666655433322 233333 348888999999
Q ss_pred HHHHHHHhccc
Q 023080 267 WPKLLEALNLD 277 (287)
Q Consensus 267 ~~~I~~~l~~~ 277 (287)
.++|...+..-
T Consensus 183 ~~~i~~~~~~~ 193 (201)
T COG0237 183 LEQIEKLLKEL 193 (201)
T ss_pred HHHHHHHHHHH
Confidence 99888877643
No 62
>PLN02422 dephospho-CoA kinase
Probab=99.52 E-value=5.6e-13 Score=114.59 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH---------------
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD--------------- 115 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~--------------- 115 (287)
.|+|+|++||||||+++.|+ ++|++++++|++.++.+..++.....+.+.+.... .+..
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~ 81 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQ 81 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 68999999999999999999 58999999999999998877766666665553211 1221
Q ss_pred ---HHHHHHHHHHHHh----cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 116 ---EIIFNLLSKRLEA----GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 116 ---~~~~~~l~~~l~~----~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
++++..+...+.. ....+...+|+| .|.-.+ ..+ ...+|.+|++++|.++.++|+..|+
T Consensus 82 ~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~e-ipLL~E--~~~--~~~~D~vI~V~a~~e~ri~RL~~R~--------- 147 (232)
T PLN02422 82 LLNRLLAPYISSGIFWEILKLWLKGCKVIVLD-IPLLFE--TKM--DKWTKPVVVVWVDPETQLERLMARD--------- 147 (232)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEE-ehhhhh--cch--hhhCCEEEEEECCHHHHHHHHHHcC---------
Confidence 2334444333321 111111345555 232211 001 1137999999999999999999984
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~ 268 (287)
.-+.+.+.+|++.... ..+. ..... +.|+++++.+++..
T Consensus 148 -----------------------------------g~s~eea~~Ri~~Q~~----~eek-~~~AD-~VI~N~gs~e~L~~ 186 (232)
T PLN02422 148 -----------------------------------GLSEEQARNRINAQMP----LDWK-RSKAD-IVIDNSGSLEDLKQ 186 (232)
T ss_pred -----------------------------------CCCHHHHHHHHHHcCC----hhHH-HhhCC-EEEECCCCHHHHHH
Confidence 2245666666644322 1112 22233 46888889999999
Q ss_pred HHHHHhcc
Q 023080 269 KLLEALNL 276 (287)
Q Consensus 269 ~I~~~l~~ 276 (287)
++.+.++.
T Consensus 187 qv~~ll~~ 194 (232)
T PLN02422 187 QFQKVLEK 194 (232)
T ss_pred HHHHHHHH
Confidence 99888754
No 63
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.51 E-value=4.6e-13 Score=113.18 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=107.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC----Cccc--------------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG----KLVS-------------- 114 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g----~~~~-------------- 114 (287)
.|+.|+|+|++||||||+++.|++.+|+++++.|.+.++.+.. +.....+.+.+..+ ..+.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 4578999999999999999999999999999999999887654 33333344333221 1111
Q ss_pred ----HHHHHHHHHHHHHhcccC-CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080 115 ----DEIIFNLLSKRLEAGQAG-GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN 189 (287)
Q Consensus 115 ----~~~~~~~l~~~l~~~~~~-~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~ 189 (287)
..+++..+...+...-.. ....+|+|. |.-.+. .+.....+|.+|++.+|.++.++|++.|.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei-pLL~E~--~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd---------- 150 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKESDTVMTIVDI-PLLGPY--NFRHYDYLKKVIVIKADLETRIRRLMERD---------- 150 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe-chhhhc--cCchhhhCCEEEEEECCHHHHHHHHHHcC----------
Confidence 123344444333221111 123455663 222110 00001137899999999999999999874
Q ss_pred cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHH
Q 023080 190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWP 268 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~ 268 (287)
.-+.+.+..|++.... ..+.-...+ ++|++++ +.+++..
T Consensus 151 ----------------------------------~~s~~~a~~ri~~Q~~----~eek~~~aD--~VI~N~g~~~~~l~~ 190 (204)
T PRK14733 151 ----------------------------------GKNRQQAVAFINLQIS----DKEREKIAD--FVIDNTELTDQELES 190 (204)
T ss_pred ----------------------------------CCCHHHHHHHHHhCCC----HHHHHHhCC--EEEECcCCCHHHHHH
Confidence 2245666666655422 222222233 4588888 9999999
Q ss_pred HHHHHhccch
Q 023080 269 KLLEALNLDE 278 (287)
Q Consensus 269 ~I~~~l~~~~ 278 (287)
++.+.++.+.
T Consensus 191 ~~~~~~~~~~ 200 (204)
T PRK14733 191 KLITTINEIT 200 (204)
T ss_pred HHHHHHHHHH
Confidence 9999888763
No 64
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.51 E-value=4.9e-13 Score=104.96 Aligned_cols=109 Identities=27% Similarity=0.334 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
..+.|+|+|-||+||||+|++||+.+|+.+|.+++++++.-- .....+-.+ --.+.++.+...+...+..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l-----~~gyDE~y~-c~i~DEdkv~D~Le~~m~~G--- 76 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL-----YEGYDEEYK-CHILDEDKVLDELEPLMIEG--- 76 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc-----hhccccccc-CccccHHHHHHHHHHHHhcC---
Confidence 456799999999999999999999999999999999987211 110000000 12345566777777777663
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
|.|+|-..... ..-.++|+||.|.+|.+++.+||..|+
T Consensus 77 ---g~IVDyHgCd~------FperwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 77 ---GNIVDYHGCDF------FPERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred ---CcEEeecccCc------cchhheeEEEEEecCchHHHHHHHHcC
Confidence 88888322110 000147899999999999999999886
No 65
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.49 E-value=7.4e-13 Score=110.98 Aligned_cols=160 Identities=20% Similarity=0.224 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-----CCcccH---------------
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-----GKLVSD--------------- 115 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-----g~~~~~--------------- 115 (287)
+|+|+|.+||||||+++.|++..|++++++|++.++.+..+......+.+.+.. ...+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 488999999999999999999878999999999999888777666655554431 111111
Q ss_pred ---HHHHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 116 ---EIIFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 116 ---~~~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
.+++..+ .+.+...... +..+|++ .|...+. .+. ..+|.+|+++++.+++++|+..|.
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~-~~~vvi~-~pll~e~--~~~--~~~D~vv~V~~~~~~~~~Rl~~R~--------- 145 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSK-LAYVLLD-VPLLFEN--KLR--SLCDRVIVVDVSPQLQLERLMQRD--------- 145 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcC-CCEEEEE-chHhhhC--CcH--HhCCEEEEEECCHHHHHHHHHHcC---------
Confidence 1122222 2222222111 1234444 3333211 111 137899999999999999999884
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~ 268 (287)
..+.+.+.+|++.+.. ..+.-...+ +.|+++++++++..
T Consensus 146 -----------------------------------~~s~~~~~~r~~~q~~----~~~~~~~ad--~vI~N~~~~e~l~~ 184 (188)
T TIGR00152 146 -----------------------------------NLTEEEVQKRLASQMD----IEERLARAD--DVIDNSATLADLVK 184 (188)
T ss_pred -----------------------------------CCCHHHHHHHHHhcCC----HHHHHHhCC--EEEECCCCHHHHHH
Confidence 2345667777766522 122212222 45788889999988
Q ss_pred HHH
Q 023080 269 KLL 271 (287)
Q Consensus 269 ~I~ 271 (287)
++.
T Consensus 185 ~~~ 187 (188)
T TIGR00152 185 QLE 187 (188)
T ss_pred HHh
Confidence 875
No 66
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.49 E-value=7.7e-13 Score=119.29 Aligned_cols=115 Identities=20% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~ 129 (287)
..++..|+|+|+|||||||+++.|++++|++++++|..+.+. .|..+.+++. .|.....+.....+...+...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~------~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~ 203 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIERE------AGLSVSEIFALYGQEGYRRLERRALERLIAEH 203 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHH------hCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence 346678999999999999999999999999999998877663 1222333332 232222233333444433322
Q ss_pred ccCCCccEEEe-CC--CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 130 QAGGESGFILD-GF--PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 130 ~~~~~~g~Ild-g~--p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+|+. |. +........+ ....++|||++|.+++++|+.+|.
T Consensus 204 -----~~~VI~~Ggg~v~~~~~~~~l---~~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 204 -----EEMVLATGGGIVSEPATFDLL---LSHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred -----CCEEEECCCchhCCHHHHHHH---HhCCEEEEEECCHHHHHHHHhcCC
Confidence 234443 32 2222222222 224579999999999999998864
No 67
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.48 E-value=1.7e-12 Score=112.59 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-----CCcccH--------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-----GKLVSD-------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-----g~~~~~-------------- 115 (287)
++|.|+|.+||||||+++.|++++|+++|+.|.+.++...+++.....+.+.|.. +..+..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999999999999999999999888777665666554422 112221
Q ss_pred ----HHHHHHHHHHHHhcc-------------cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 116 ----EIIFNLLSKRLEAGQ-------------AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 116 ----~~~~~~l~~~l~~~~-------------~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+++..+...+.... ..+...+|+|. |.-.+. . +. ...+|.+|++++|.++.++|+..|
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev-PLL~E~-~-~~-~~~~D~iv~V~a~~e~ri~RL~~R 157 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA-PTLFET-K-TF-TYFVSASVVVSCSEERQIERLRKR 157 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe-chhhcc-C-ch-hhcCCeEEEEECCHHHHHHHHHHc
Confidence 122233222221100 01012466663 221110 0 00 013699999999999999999987
Q ss_pred CccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEe
Q 023080 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD 258 (287)
Q Consensus 179 ~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id 258 (287)
+ ..+.+.+++|++.... ..+ ...... +.|+
T Consensus 158 ~--------------------------------------------g~s~eea~~Ri~~Q~~----~~e-k~~~aD-~VI~ 187 (244)
T PTZ00451 158 N--------------------------------------------GFSKEEALQRIGSQMP----LEE-KRRLAD-YIIE 187 (244)
T ss_pred C--------------------------------------------CCCHHHHHHHHHhCCC----HHH-HHHhCC-EEEE
Confidence 4 2345777777765221 222 222333 3466
Q ss_pred CC--CCcccHHHHHHHHhcc
Q 023080 259 LP--GGIPESWPKLLEALNL 276 (287)
Q Consensus 259 ~~--~~~eev~~~I~~~l~~ 276 (287)
++ ++++++..+|.+.+..
T Consensus 188 N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 188 NDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 77 8999999999988753
No 68
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.48 E-value=1.2e-12 Score=109.47 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-----cCCchHHHHHHHHhcCCcccHHHH-------HHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-----SSGSLSQQLSEIVNQGKLVSDEII-------FNLL 122 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-----~~~~~~~~i~~~l~~g~~~~~~~~-------~~~l 122 (287)
.+|+|+||+||||||++++|+..++..++..+..+..... ......+.....++++.+...... ...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 4789999999999999999999887655554433322100 111223344444444433211100 0113
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN 201 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 201 (287)
...+.. +..+|++|. ......+.. ...+-.+|+|++|.+++.+|+..|.
T Consensus 83 ~~~l~~-----g~~VI~~G~---~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~---------------------- 132 (186)
T PRK10078 83 DLWLHA-----GFDVLVNGS---RAHLPQARARYQSALLPVCLQVSPEILRQRLENRG---------------------- 132 (186)
T ss_pred HHHHhC-----CCEEEEeCh---HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC----------------------
Confidence 333333 356888875 211122222 3345578999999999999998763
Q ss_pred CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhh
Q 023080 202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYE 280 (287)
Q Consensus 202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~ 280 (287)
..+.+.++.|++.+. +|.. ...+.+|+++++++++++|...|.....+
T Consensus 133 ----------------------~~~~~~i~~rl~r~~--------~~~~-ad~~vi~~~~s~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 133 ----------------------RENASEINARLARAA--------RYQP-QDCHTLNNDGSLRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred ----------------------CCCHHHHHHHHHHhh--------hhcc-CCEEEEeCCCCHHHHHHHHHHHHhhcCcc
Confidence 223455777775431 2322 34567888889999999999999866533
No 69
>PRK13976 thymidylate kinase; Provisional
Probab=99.48 E-value=1.7e-12 Score=110.44 Aligned_cols=173 Identities=14% Similarity=0.067 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcC-CcccHHHHHHHHHHHHHh---
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQG-KLVSDEIIFNLLSKRLEA--- 128 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g-~~~~~~~~~~~l~~~l~~--- 128 (287)
++|+|.|+.||||||+++.|++.|.-. ...+ .+.+ .+.++.+++.+++++... ..-+.....-.+..+..+
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~ 77 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTR--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVK 77 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEee--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999988431 1111 0111 134556777777776531 121211111111111111
Q ss_pred ---cccCCCccEEEeCCCC------------CHHHHHHHHHh---cCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080 129 ---GQAGGESGFILDGFPR------------TVKQAEILEEV---MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV 190 (287)
Q Consensus 129 ---~~~~~~~g~Ildg~p~------------~~~~~~~l~~~---~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~ 190 (287)
+....+..+|.|-|.. ..++...+... ..||++|||++|++++++|+..++..
T Consensus 78 ~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e--------- 148 (209)
T PRK13976 78 VILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYE--------- 148 (209)
T ss_pred HHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchh---------
Confidence 1111145677775432 22233334332 25999999999999999999654311
Q ss_pred ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeC---CCC---cc
Q 023080 191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDL---PGG---IP 264 (287)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~---~~~---~e 264 (287)
....+.+++-.+.|.+... .+ ...++.+|+ .++ ++
T Consensus 149 ---------------------------------~~~~~~l~~v~~~Y~~l~~----~~--~~~~~~id~~~~~~~~~~~e 189 (209)
T PRK13976 149 ---------------------------------FMDLEFYDKVRKGFREIVI----KN--PHRCHVITCIDAKDNIEDIN 189 (209)
T ss_pred ---------------------------------cccHHHHHHHHHHHHHHHH----hC--CCCeEEEECCCCccCcCCHH
Confidence 1234455444445544321 11 234677887 345 99
Q ss_pred cHHHHHHHHhccch
Q 023080 265 ESWPKLLEALNLDE 278 (287)
Q Consensus 265 ev~~~I~~~l~~~~ 278 (287)
+|.++|.+.|....
T Consensus 190 ~v~~~i~~~i~~~~ 203 (209)
T PRK13976 190 SVHLEIVKLLHAVT 203 (209)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887655
No 70
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.47 E-value=2e-12 Score=105.40 Aligned_cols=103 Identities=29% Similarity=0.339 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCCCccEEEeC
Q 023080 63 PGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGGESGFILDG 141 (287)
Q Consensus 63 pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg 141 (287)
|||||||+++.||+.+|++++++|+++.+ ..+..+.+++.. |.....+....++.+.+.. ...+|..|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~------~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~-----~~~VIa~G 69 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE------RTGMSISEIFAEEGEEAFRELESEALRELLKE-----NNCVIACG 69 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH------HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SSEEEEE-
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH------HhCCcHHHHHHcCChHHHHHHHHHHHHHHhcc-----CcEEEeCC
Confidence 79999999999999999999999999877 344556666643 3222223333444333332 23444443
Q ss_pred --CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 142 --FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 142 --~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+......+.+... ..+|||+.+++++.+|+..+.
T Consensus 70 GG~~~~~~~~~~L~~~---g~vI~L~~~~~~l~~Rl~~~~ 106 (158)
T PF01202_consen 70 GGIVLKEENRELLKEN---GLVIYLDADPEELAERLRARD 106 (158)
T ss_dssp TTGGGSHHHHHHHHHH---SEEEEEE--HHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHhC---CEEEEEeCCHHHHHHHHhCCC
Confidence 56666666666643 379999999999999997754
No 71
>PRK07933 thymidylate kinase; Validated
Probab=99.47 E-value=6.9e-13 Score=113.34 Aligned_cols=173 Identities=18% Similarity=0.088 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcC--Cc-c-cHHHHH--------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQG--KL-V-SDEIIF-------- 119 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g--~~-~-~~~~~~-------- 119 (287)
|+|+|.|+.||||||+++.|++++. ..++-+ ++....+++.+..+++.+... .. . +.....
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~----~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATL----AFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE----ecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 5799999999999999999999984 333322 110002344555666655431 11 0 111110
Q ss_pred --HHHHHHHHhcccCCCccEEEeCCCCCH-----------------HHHHHHHH----hcCccEEEEEecCHHHHHHHHh
Q 023080 120 --NLLSKRLEAGQAGGESGFILDGFPRTV-----------------KQAEILEE----VMDIDLVVNLKLCEDVLLEKCL 176 (287)
Q Consensus 120 --~~l~~~l~~~~~~~~~g~Ildg~p~~~-----------------~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~ 176 (287)
..+...+.. +..+|+|.|..+. .+...++. ...||++|||++++++.++|+.
T Consensus 77 ~~~~I~p~l~~-----g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~ 151 (213)
T PRK07933 77 ARDELAGLLAA-----HDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERAR 151 (213)
T ss_pred hHHHHHHHHhC-----CCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHH
Confidence 112222221 3567888643221 11222322 1259999999999999999998
Q ss_pred CCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEE
Q 023080 177 GRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLE 256 (287)
Q Consensus 177 ~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~ 256 (287)
+|+... .+. .. .+-+...+.+++-.+.|.+... .+ ....++.
T Consensus 152 ~R~~~~-~~~--~~------------------------------d~~E~~~~f~~~v~~~Y~~~~~----~~-~~~~~~~ 193 (213)
T PRK07933 152 RRAAQD-ADR--AR------------------------------DAYERDDGLQQRTGAVYAELAA----QG-WGGPWLV 193 (213)
T ss_pred hhcccc-CCc--cc------------------------------ccccccHHHHHHHHHHHHHHHH----hc-CCCCeEE
Confidence 874210 000 00 0001122334333344443221 11 1346888
Q ss_pred EeCCCCcccHHHHHHHHh
Q 023080 257 FDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 257 id~~~~~eev~~~I~~~l 274 (287)
||+++++++|.++|.+.|
T Consensus 194 ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 194 VDPDVDPAALAARLAAAL 211 (213)
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
No 72
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.46 E-value=3.8e-12 Score=102.76 Aligned_cols=109 Identities=22% Similarity=0.283 Sum_probs=66.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCcc
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGESG 136 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~g 136 (287)
|+|+|+|||||||+++.|++.+|+.+++.|+++...... ... +++... ..+.+.....+.+..... ..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~----~~~~~~---~~~~~~~~e~~~~~~~~~--~~~ 70 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIP----EIFAEE---GEEGFRELEREVLLLLLT--KEN 70 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHH----HHHHHH---CHHHHHHHHHHHHHHHhc--cCC
Confidence 789999999999999999999999999999887764321 122 222110 112222221111221111 134
Q ss_pred EEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 137 FILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 137 ~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+|+++ +...... ...+.....+|||++|.+++.+|+..|.
T Consensus 71 ~vi~~g~~~i~~~~~---~~~~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 71 AVIATGGGAVLREEN---RRLLLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred cEEECCCCccCcHHH---HHHHHcCCeEEEEeCCHHHHHHHhccCC
Confidence 55552 2223222 2222345689999999999999998864
No 73
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.6e-12 Score=100.94 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=100.6
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH---HHHHHHHHHHhcccCCCcc
Q 023080 60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI---IFNLLSKRLEAGQAGGESG 136 (287)
Q Consensus 60 ~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~---~~~~l~~~l~~~~~~~~~g 136 (287)
+|.+||||||+++.||+++|+.+|+-|++-- ...|.+ +..|.++.|+- +...+..++......+..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp---------~aNi~K-M~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHP---------PANIEK-MSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCC---------HHHHHH-HhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 5999999999999999999999999988732 123333 57788887765 3344445554433331224
Q ss_pred EEEeCCCCCHHHHHHHHHhcCcc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCccc
Q 023080 137 FILDGFPRTVKQAEILEEVMDID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHC 215 (287)
Q Consensus 137 ~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~ 215 (287)
+|.+. -.-......|. -..|+ .+|||+.+.+++++|+..|.- .|||+
T Consensus 71 vi~CS-ALKr~YRD~LR-~~~~~~~Fv~L~g~~~~i~~Rm~~R~g-----------------------HFM~~------- 118 (161)
T COG3265 71 VIACS-ALKRSYRDLLR-EANPGLRFVYLDGDFDLILERMKARKG-----------------------HFMPA------- 118 (161)
T ss_pred EEecH-HHHHHHHHHHh-ccCCCeEEEEecCCHHHHHHHHHhccc-----------------------CCCCH-------
Confidence 44432 22222223332 23355 468999999999999999963 46653
Q ss_pred ccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 216 MSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 216 ~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
..++.+++..+. | .....++.||.+.+++++.+++.+.|..
T Consensus 119 ------------~ll~SQfa~LE~---P-----~~de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 119 ------------SLLDSQFATLEE---P-----GADEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred ------------HHHHHHHHHhcC---C-----CCCCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 444443333322 1 1112589999999999999999988864
No 74
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.45 E-value=7e-13 Score=110.83 Aligned_cols=113 Identities=19% Similarity=0.191 Sum_probs=67.4
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH------------HHHHHHH
Q 023080 59 FLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF------------NLLSKRL 126 (287)
Q Consensus 59 i~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~------------~~l~~~l 126 (287)
|.|+.||||||+++.|++++....+.+ +.......++.|..+++++..+...+..... ..+...+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~---~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l 77 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKV---IITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPAL 77 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEE---EEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcc---cccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999984333210 0000123456677777777733333332211 1122222
Q ss_pred HhcccCCCccEEEeCC----------CC--CHHHHHHHH-Hhc--CccEEEEEecCHHHHHHHHhCCC
Q 023080 127 EAGQAGGESGFILDGF----------PR--TVKQAEILE-EVM--DIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~----------p~--~~~~~~~l~-~~~--~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.. +..+|+|-| .. .......+. ... .||++|||++++++..+|+..|.
T Consensus 78 ~~-----g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~ 140 (186)
T PF02223_consen 78 KR-----GKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRG 140 (186)
T ss_dssp HT-----TSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTS
T ss_pred cC-----CCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCC
Confidence 22 467888832 11 123333333 233 79999999999999999999986
No 75
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.44 E-value=8.5e-13 Score=105.24 Aligned_cols=113 Identities=25% Similarity=0.261 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch---HHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL---SQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~---~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+|+|+|+|||||||+++.|++.++..+++.|++.........+. ........ .+.+...+...+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~---- 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALRN---- 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHHT----
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHHc----
Confidence 47899999999999999999999999999977665432211110 00011100 12233344444444
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCc
Q 023080 133 GESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
+..+|+|+......+...+.... .+..+|+|+++.+++.+|+..|..
T Consensus 70 -g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 70 -GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp -T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred -CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 36799997666655555544432 255789999999999999999863
No 76
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.43 E-value=1.8e-12 Score=107.78 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=79.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----ccc----------------
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVS---------------- 114 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~---------------- 114 (287)
+|+|+|++||||||+++.|++ +|++++++|++.++.+..+......+.+.+..+. .+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 488999999999999999999 9999999999999988877777777777664322 111
Q ss_pred --HHHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 115 --DEIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 115 --~~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+++..+...+...- .....-+|+|+ |.-.+. .+. ..+|.+|++++|.++.++|+..|.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~~--~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GLE--KLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--CcH--HhCCeEEEEECCHHHHHHHHHHcC
Confidence 2334444444433211 11012355553 222111 011 137899999999999999999884
No 77
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.6e-12 Score=101.44 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=105.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH---HHHHhc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS---KRLEAG 129 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~---~~l~~~ 129 (287)
-+-.|+++|++||||||+++.|++++++.+++.||+--. .-.+-+.+|..++|+--+..+. ..+...
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~----------~NveKM~~GipLnD~DR~pWL~~i~~~~~~~ 80 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP----------ANVEKMTQGIPLNDDDRWPWLKKIAVELRKA 80 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH----------HHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence 444789999999999999999999999999999887422 1223356677776654332222 222221
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhcC-------c---cEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVMD-------I---DLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGN 199 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~-------~---d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~ 199 (287)
... ++++|+...-.-......+..... | -.+|+|.++.+++.+|+..|.
T Consensus 81 l~~-~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~-------------------- 139 (191)
T KOG3354|consen 81 LAS-GQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK-------------------- 139 (191)
T ss_pred hhc-CCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcc--------------------
Confidence 122 578999865444444555554221 2 257899999999999999985
Q ss_pred CCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhc
Q 023080 200 GNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALN 275 (287)
Q Consensus 200 ~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~ 275 (287)
+.|||+ +.++.+++..+. |- .+..+++.|+.. .++|+++..|.+.+.
T Consensus 140 ---gHFMp~-------------------~lleSQf~~LE~---p~----~~e~div~isv~~~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 140 ---GHFMPA-------------------DLLESQFATLEA---PD----ADEEDIVTISVKTYSVEEIVDTIVKMVA 187 (191)
T ss_pred ---cccCCH-------------------HHHHHHHHhccC---CC----CCccceEEEeeccCCHHHHHHHHHHHHH
Confidence 346653 344433333221 11 112257888877 899999988877664
No 78
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.42 E-value=6.6e-12 Score=105.82 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=75.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchH-HHHHHHHhcCCcccHHH--------------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLS-QQLSEIVNQGKLVSDEI-------------- 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~-------------- 117 (287)
.+++|+|.|+|||||||+|+.|++++|+.++..+|++|+.+......+ ......+..++.++++.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999887543322 11111111112222111
Q ss_pred ----HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEec-CHHHHHHHHhCCC
Q 023080 118 ----IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKL-CEDVLLEKCLGRR 179 (287)
Q Consensus 118 ----~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~-~~e~l~~Rl~~R~ 179 (287)
+..++...+.+ +..+|+||.............. . ..++++.+ +++.+.+|+..|.
T Consensus 82 v~~~L~~va~~~l~~-----G~sVIvEgv~l~p~~~~~~~~~-~-v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 82 IMPGINRVIRRALLN-----GEDLVIESLYFHPPMIDENRTN-N-IRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHc-----CCCEEEEecCcCHHHHHHHHhc-C-eEEEEEEeCCHHHHHHHHHHHh
Confidence 11112222222 5789999976665544322211 1 24566665 6788889999885
No 79
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.41 E-value=9e-12 Score=105.03 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=103.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----Cccc-----------------
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVS----------------- 114 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~----------------- 114 (287)
|+|+|++||||||+++.|++ +|.++++.|++.+..+..++.....+.+.|..+ +.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 78999999999999999975 799999999999998877776656565544321 1111
Q ss_pred -HHHHHHHHHHHHHhcc--cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080 115 -DEIIFNLLSKRLEAGQ--AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA 191 (287)
Q Consensus 115 -~~~~~~~l~~~l~~~~--~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~ 191 (287)
.++++..+...+.... ...+..+|+| .|.-.+. .+ ...+|.+|++++|.++.++|+..|.
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e-~pLL~E~--~~--~~~~D~vi~V~a~~e~r~~RL~~R~------------ 143 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWE-VPLLFET--DA--YTLCDATVTVDSDPEESILRTISRD------------ 143 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEE-eeeeeEc--Cc--hhhCCEEEEEECCHHHHHHHHHHcC------------
Confidence 1233444443332110 1101234444 3333220 00 1137999999999999999999884
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL 271 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~ 271 (287)
..+.+.+..|+.... +..+.-...+ +.|+++++++++..++.
T Consensus 144 --------------------------------g~s~e~a~~ri~~Q~----~~~~k~~~aD--~vI~N~~~~~~l~~~v~ 185 (196)
T PRK14732 144 --------------------------------GMKKEDVLARIASQL----PITEKLKRAD--YIVRNDGNREGLKEECK 185 (196)
T ss_pred --------------------------------CCCHHHHHHHHHHcC----CHHHHHHhCC--EEEECCCCHHHHHHHHH
Confidence 224566777766521 3333333333 35778889999999999
Q ss_pred HHhc
Q 023080 272 EALN 275 (287)
Q Consensus 272 ~~l~ 275 (287)
+.++
T Consensus 186 ~l~~ 189 (196)
T PRK14732 186 ILYS 189 (196)
T ss_pred HHHH
Confidence 8775
No 80
>PRK07261 topology modulation protein; Provisional
Probab=99.41 E-value=8.4e-13 Score=109.02 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+|+.|++.+++++++.|.+.... . ....+.+.....+...+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~------ 58 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--N--------------WQERDDDDMIADISNFLLK------ 58 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--c--------------cccCCHHHHHHHHHHHHhC------
Confidence 47999999999999999999999999999997764320 0 0112233344445554443
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
..||+||..........+. ..|.+|+|++|..+++.|+.+|.+
T Consensus 59 ~~wIidg~~~~~~~~~~l~---~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 59 HDWIIDGNYSWCLYEERMQ---EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CCEEEcCcchhhhHHHHHH---HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 3599999876644333343 468999999999999999998864
No 81
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.40 E-value=7.4e-13 Score=110.62 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=105.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccHHHH--------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG----VPHIATGDLVREELASSGS----LSQQLSEIVNQGKLVSDEII-------- 118 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg----~~~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~~~~-------- 118 (287)
..|+|+||+||||+|+++.|.+.+. ..+..+....|.....+.. ..+.+...+.+|.+++....
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 4689999999999999999998852 2333332222221111222 23677778888877654332
Q ss_pred HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEe-cCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080 119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANINVKG 197 (287)
Q Consensus 119 ~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 197 (287)
...+...+.. ++.+|+|+.|....+.... ....++|||. .+.+.+.+|+.+|.
T Consensus 83 ~~~i~~~~~~-----~~~~ild~~~~~~~~l~~~---~~~~~vIfi~~~s~~~l~~rl~~R~------------------ 136 (184)
T smart00072 83 KETIRQVAEQ-----GKHCLLDIDPQGVKQLRKA---QLYPIVIFIAPPSSEELERRLRGRG------------------ 136 (184)
T ss_pred HHHHHHHHHc-----CCeEEEEECHHHHHHHHHh---CCCcEEEEEeCcCHHHHHHHHHhcC------------------
Confidence 2345555544 4789999987776655433 2223788997 55667999998764
Q ss_pred CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
+++.+.+++|+....+... .+...+ ..|.++ +.++.+.++..+|...
T Consensus 137 --------------------------~~~~~~i~~rl~~a~~~~~----~~~~fd--~~I~n~-~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 137 --------------------------TETAERIQKRLAAAQKEAQ----EYHLFD--YVIVND-DLEDAYEELKEILEAE 183 (184)
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHh----hhccCC--EEEECc-CHHHHHHHHHHHHHhc
Confidence 5677889999987655432 232222 334444 7999999999988653
No 82
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.40 E-value=1.6e-12 Score=108.03 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD-------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~-------------- 115 (287)
|+|.|+|..||||||+++.|++ +|+++++.|.+.++.+..+++....+.+.+...- .+..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5799999999999999999998 9999999999999988877777777766654322 1221
Q ss_pred ----HHHHHHHHHHHHh----cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 116 ----EIIFNLLSKRLEA----GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 116 ----~~~~~~l~~~l~~----~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+++.++...+.. ... ..-+|+|. |.-.+. .+ ...+|.+|++.+|.++.++|++.|+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~--~~~~v~e~-pLL~E~--~~--~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKS--EKVVVVEI-PLLFES--GL--EKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHS--TSEEEEE--TTTTTT--TG--GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC--CCEEEEEc-chhhhh--hH--hhhhceEEEEECCHHHHHHHHHhhC
Confidence 2344444433332 211 13556663 322110 01 1238999999999999999999874
No 83
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.40 E-value=2e-11 Score=104.84 Aligned_cols=124 Identities=18% Similarity=0.185 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH--HHHHHHcCCchHH------HHHHHHhcCC---cccHHHHHHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL--VREELASSGSLSQ------QLSEIVNQGK---LVSDEIIFNLLSK 124 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l--lr~~~~~~~~~~~------~i~~~l~~g~---~~~~~~~~~~l~~ 124 (287)
+|+|.|..||||||+++.|+++++..++..... .......++.++. .++.+..... .........++..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 489999999999999999999998765533211 1000011112221 1333333211 1111211122222
Q ss_pred HHHh------cccCCCccEEEeCCCCCH------------------HHHHHHHH-----hcCccEEEEEecCHHHHHHHH
Q 023080 125 RLEA------GQAGGESGFILDGFPRTV------------------KQAEILEE-----VMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 125 ~l~~------~~~~~~~g~Ildg~p~~~------------------~~~~~l~~-----~~~~d~vi~L~~~~e~l~~Rl 175 (287)
+..+ .....+..+|+|.++-+. .....+.. ...||++|||++|++++.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 2221 011114678999753210 11111111 135999999999999999999
Q ss_pred hCCC
Q 023080 176 LGRR 179 (287)
Q Consensus 176 ~~R~ 179 (287)
.+|+
T Consensus 161 ~~R~ 164 (219)
T cd02030 161 KKRG 164 (219)
T ss_pred HHcC
Confidence 8875
No 84
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.39 E-value=1.8e-12 Score=110.25 Aligned_cols=169 Identities=14% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH---HHcCCc----hHHHHHHHHhcCCcccHHH------
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE---LASSGS----LSQQLSEIVNQGKLVSDEI------ 117 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~---~~~~~~----~~~~i~~~l~~g~~~~~~~------ 117 (287)
+.++.+|+|+||+||||||+++.|.+......+......|.. ...+.. ....+...+.+|.++....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 447889999999999999999999865311111111111110 000000 1234445555555543211
Q ss_pred --HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC--HHHHHHHHhCCCccccCCCccccccc
Q 023080 118 --IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC--EDVLLEKCLGRRMCSQCGGNFNVANI 193 (287)
Q Consensus 118 --~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~--~e~l~~Rl~~R~~~~~~g~~y~~~~~ 193 (287)
-...+...+.. +..+|+|.-+. .+..+... .||+++++.+| .+++.+|+..|.
T Consensus 90 Gt~~~~i~~~~~~-----g~~vi~~~~~~---g~~~l~~~-~pd~~~if~~pps~e~l~~Rl~~R~-------------- 146 (206)
T PRK14738 90 GVPKAPVRQALAS-----GRDVIVKVDVQ---GAASIKRL-VPEAVFIFLAPPSMDELTRRLELRR-------------- 146 (206)
T ss_pred cCCHHHHHHHHHc-----CCcEEEEcCHH---HHHHHHHh-CCCeEEEEEeCCCHHHHHHHHHHcC--------------
Confidence 11234444444 35678876443 33444443 37877666654 568899998874
Q ss_pred cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHH
Q 023080 194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEA 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~ 273 (287)
+++.+.+.+|+..++...... ....++.||++.++++++++|.+.
T Consensus 147 ------------------------------~~~~~~~~~Rl~~~~~e~~~~-----~~~~~~iId~~~~~e~v~~~i~~~ 191 (206)
T PRK14738 147 ------------------------------TESPEELERRLATAPLELEQL-----PEFDYVVVNPEDRLDEAVAQIMAI 191 (206)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHhcc-----cCCCEEEECCCCCHHHHHHHHHHH
Confidence 345677888888776543321 122578899999999999999999
Q ss_pred hccc
Q 023080 274 LNLD 277 (287)
Q Consensus 274 l~~~ 277 (287)
|...
T Consensus 192 l~~~ 195 (206)
T PRK14738 192 ISAE 195 (206)
T ss_pred HHHH
Confidence 9765
No 85
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.38 E-value=1.9e-11 Score=101.47 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccH-H------HHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGS----LSQQLSEIVNQGKLVSD-E------IIFN 120 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~-~------~~~~ 120 (287)
.+|+|+|++||||||+++.|+..++.. .+....+.+.....+.. ....+......+.+... + -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 368999999999999999999987542 11111111110001100 11223333333322110 0 0111
Q ss_pred HHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCC
Q 023080 121 LLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG 200 (287)
Q Consensus 121 ~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~ 200 (287)
.+...+.. +..+|+||... ....+........+|||+++.+++.+|+..|.
T Consensus 82 ~i~~~~~~-----g~~vv~~g~~~---~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~--------------------- 132 (179)
T TIGR02322 82 EIDQWLEA-----GDVVVVNGSRA---VLPEARQRYPNLLVVNITASPDVLAQRLAARG--------------------- 132 (179)
T ss_pred HHHHHHhc-----CCEEEEECCHH---HHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC---------------------
Confidence 22233332 45788988632 12222222234478999999999999999873
Q ss_pred CCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 201 NPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
....+.+.+|+..+..... ....++.++++++++++..+|.+.|..
T Consensus 133 -----------------------~~~~~~~~~rl~~~~~~~~-------~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 133 -----------------------RESREEIEERLARSARFAA-------APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred -----------------------CCCHHHHHHHHHHHhhccc-------ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 1224566667654432211 223466688888999999999998864
No 86
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.37 E-value=6.6e-12 Score=103.39 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc-----HHH------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS-----DEI------------ 117 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~-----~~~------------ 117 (287)
.+|.++|..||||||+++.+. .+|+++|++|.+.|+...++++....+.+.|......+ .+.
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 467899999999999999997 79999999999999999999999998888776543322 211
Q ss_pred ------HHHHHH----HHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080 118 ------IFNLLS----KRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN 187 (287)
Q Consensus 118 ------~~~~l~----~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~ 187 (287)
++..+. +.+...-..+.+-+|+| .|.-.+- .+.. .+..+|.+.|+.++.++|+..|.
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlD-iPLLFE~--~~~~--~~~~tvvV~cd~~~Ql~Rl~~Rd-------- 147 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLD-IPLLFEA--KLLK--ICHKTVVVTCDEELQLERLVERD-------- 147 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEe-chHHHHH--hHHh--heeeEEEEEECcHHHHHHHHHhc--------
Confidence 111121 11111122223445665 3333221 1222 24567888899999999999873
Q ss_pred cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
.-+++..+.|++... |+.+.-.... +++|+++++++..
T Consensus 148 ------------------------------------~lse~dAe~Rl~sQm----p~~~k~~~a~--~Vi~Nng~~~~l~ 185 (225)
T KOG3220|consen 148 ------------------------------------ELSEEDAENRLQSQM----PLEKKCELAD--VVIDNNGSLEDLY 185 (225)
T ss_pred ------------------------------------cccHHHHHHHHHhcC----CHHHHHHhhh--eeecCCCChHHHH
Confidence 346677777777653 3333333333 5699999999999
Q ss_pred HHHHHHhccch
Q 023080 268 PKLLEALNLDE 278 (287)
Q Consensus 268 ~~I~~~l~~~~ 278 (287)
++|..++....
T Consensus 186 ~qv~~v~~~~~ 196 (225)
T KOG3220|consen 186 EQVEKVLALLQ 196 (225)
T ss_pred HHHHHHHHHhc
Confidence 99988877543
No 87
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=2e-11 Score=99.95 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=107.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHHHH------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDEII------ 118 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~~~------ 118 (287)
+++.|+|+||+|+||||+.++|-+.. -..+|++...|.. ..+.. ....+.+++.+|+++....+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p-R~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP-RPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCC-CCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 67889999999999999999999998 5667776776652 22211 34577888888877654322
Q ss_pred --HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCccccccccc
Q 023080 119 --FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANINV 195 (287)
Q Consensus 119 --~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~~~ 195 (287)
...+...+.. +..+|+|-- ..-+.++....+.-..|||..| .+++.+|+.+|+
T Consensus 81 T~~~~ve~~~~~-----G~~vildId---~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg---------------- 136 (191)
T COG0194 81 TSREPVEQALAE-----GKDVILDID---VQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG---------------- 136 (191)
T ss_pred CcHHHHHHHHhc-----CCeEEEEEe---hHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC----------------
Confidence 2333344443 467888732 2223444443333345666664 467888887764
Q ss_pred cCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 196 KGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
.|+++.+.+|+...+..... +...+. +.+| .+++..+.++..++.
T Consensus 137 ----------------------------tds~e~I~~Rl~~a~~Ei~~----~~~fdy-vivN--dd~e~a~~~l~~ii~ 181 (191)
T COG0194 137 ----------------------------TDSEEVIARRLENAKKEISH----ADEFDY-VIVN--DDLEKALEELKSIIL 181 (191)
T ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHH----HHhCCE-EEEC--ccHHHHHHHHHHHHH
Confidence 78899999999999887653 333333 3343 367888888887776
Q ss_pred cc
Q 023080 276 LD 277 (287)
Q Consensus 276 ~~ 277 (287)
.+
T Consensus 182 ae 183 (191)
T COG0194 182 AE 183 (191)
T ss_pred HH
Confidence 54
No 88
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.35 E-value=3.2e-11 Score=105.57 Aligned_cols=158 Identities=25% Similarity=0.302 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
.|+|+|+|||||||+|+.|++.++ +.+++. |.++..+... .......+ .+....++...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~---~~~~e~~~-------~~~~~~~i~~~l~~-- 67 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVW---KEKYEEFI-------RDSTLYLIKTALKN-- 67 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHh---hHHhHHHH-------HHHHHHHHHHHHhC--
Confidence 388999999999999999999873 345555 5555433211 01111111 12233344444443
Q ss_pred cCCCccEEEeCCCCCHHHHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080 131 AGGESGFILDGFPRTVKQAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 206 (287)
+..+|+|+..........+. ..+.+.++|||++|.+++++|...|..
T Consensus 68 ---~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-------------------------- 118 (249)
T TIGR03574 68 ---KYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-------------------------- 118 (249)
T ss_pred ---CCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC--------------------------
Confidence 35689998654433333332 223466889999999999999987631
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC--CcccHHHHHHHHhcc
Q 023080 207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG--GIPESWPKLLEALNL 276 (287)
Q Consensus 207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~--~~eev~~~I~~~l~~ 276 (287)
....+.+...+..|..- ... |.-....+.||++. +++++++.|...+..
T Consensus 119 -----------------~~~~~~i~~l~~r~e~p---~~~-~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 119 -----------------KIPNEVIKDMYEKFDEP---GTK-YSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred -----------------CCCHHHHHHHHHhhCCC---CCC-CCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 11244555544444322 111 11112457788775 568999999887654
No 89
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.35 E-value=1.2e-11 Score=114.94 Aligned_cols=120 Identities=22% Similarity=0.261 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccH--------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSD-------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~-------------- 115 (287)
+.|.|+|++||||||+++.|++ +|+++|++|.+.++.+..++..-..+.+.+..+ +.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999987 899999999999998877665544555444322 11211
Q ss_pred ----HHHHHHHHHHHHhcc-cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 116 ----EIIFNLLSKRLEAGQ-AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 116 ----~~~~~~l~~~l~~~~-~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+++..+...+.+.. ..++..+|+.+.|.-.+. .+ ...+|.+|++++|.++.++|+..|+
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~--~~~~D~iI~V~ap~e~ri~Rl~~rR 145 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GM--APLFHLVVVVDADVEVRVRRLVEQR 145 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cc--hhhCCEEEEEECCHHHHHHHHHhcC
Confidence 223333333332211 011245666665543221 01 1137899999999999999998853
No 90
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.33 E-value=5.8e-11 Score=98.34 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHH-Hhc-CCcccHHH---HHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEI-VNQ-GKLVSDEI---IFNLLSKRL 126 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~-l~~-g~~~~~~~---~~~~l~~~l 126 (287)
+.+|+|.|+|||||||+++.|++.++.. +++.|++... +........ ..+ +.. +...+.+. ....+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA-LPLKCQDAE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh-cChhhcccc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 3579999999999999999999998654 4577666543 211000000 000 000 01111111 122222222
Q ss_pred HhcccCCCccEEEeCCCC-CHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080 127 EAGQAGGESGFILDGFPR-TVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~-~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...... +..+|+|.... .....+.+..... +-..|+|++|.+++.+|+.+|.
T Consensus 79 ~~~l~~-G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 79 AAMARA-GANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHhC-CCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 221111 57899996433 3333333443333 3467899999999999999874
No 91
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.32 E-value=7.1e-11 Score=97.93 Aligned_cols=161 Identities=15% Similarity=0.213 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------HHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------EIIFNLLSKRL 126 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------~~~~~~l~~~l 126 (287)
+-+++|+|++||||||+++.|+..++..+++.+++... ..+... ..|....+ ..+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~---------~~~r~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA---------KNIDKM-SQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH---------hHHHHH-hcCCCCCcccchHHHHHHHHHHHHHH
Confidence 34689999999999999999999999989988765321 011111 11211111 11112222221
Q ss_pred HhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080 127 EAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 206 (287)
... ..|+|+..+.. ......+...+.+-.+|||+++.+++.+|+.+|..+
T Consensus 73 ~~~----~~g~iv~s~~~-~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~------------------------- 122 (176)
T PRK09825 73 KKN----ETGFIVCSSLK-KQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGH------------------------- 122 (176)
T ss_pred hcC----CCEEEEEEecC-HHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCC-------------------------
Confidence 111 35788866543 333444555555667899999999999999998521
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
..+.+.+..+++.+... -.....++.||++.+++++..++.+.+....
T Consensus 123 -----------------~~~~~vl~~Q~~~~e~~-------~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~~ 170 (176)
T PRK09825 123 -----------------FMPPDLLQSQFDALERP-------CADEHDIARIDVNHDIENVTEQCRQAVQAFR 170 (176)
T ss_pred -----------------CCCHHHHHHHHHHcCCC-------CCCcCCeEEEECCCCHHHHHHHHHHHHHHHH
Confidence 12455666555544321 1112348999999999999988888886544
No 92
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.31 E-value=4.3e-11 Score=100.09 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=103.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHH-------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDE------- 116 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~------- 116 (287)
.++++|+|+||+||||||+++.|.+++.-.++++....|.. ..+.. ..+.+...+..|.++...
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~-r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~Y 80 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAP-RPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYY 80 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCC-CCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeee
Confidence 47889999999999999999999988743444444444431 11111 234566667777665432
Q ss_pred -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc--EEEEEecC-HHHHHHHHhCCCccccCCCcccccc
Q 023080 117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID--LVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVAN 192 (287)
Q Consensus 117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d--~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~ 192 (287)
+-...+...+.. ++.+|+|.-+....+ +... .|+ ++|||..| .+++.+|+.+|.
T Consensus 81 Gt~~~~i~~~~~~-----g~~~i~d~~~~g~~~---l~~~-~~~~~~~Ifi~pps~e~l~~RL~~R~------------- 138 (186)
T PRK14737 81 GTPKAFIEDAFKE-----GRSAIMDIDVQGAKI---IKEK-FPERIVTIFIEPPSEEEWEERLIHRG------------- 138 (186)
T ss_pred cCcHHHHHHHHHc-----CCeEEEEcCHHHHHH---HHHh-CCCCeEEEEEECCCHHHHHHHHHhcC-------------
Confidence 122334444444 467888865444433 3332 244 57888875 688999998874
Q ss_pred ccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHH
Q 023080 193 INVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLE 272 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~ 272 (287)
.++++.+++|++....... +...... .|+++ +.++...++.+
T Consensus 139 -------------------------------~~s~e~i~~Rl~~~~~e~~-----~~~~~D~-vI~N~-dle~a~~ql~~ 180 (186)
T PRK14737 139 -------------------------------TDSEESIEKRIENGIIELD-----EANEFDY-KIIND-DLEDAIADLEA 180 (186)
T ss_pred -------------------------------CCCHHHHHHHHHHHHHHHh-----hhccCCE-EEECc-CHHHHHHHHHH
Confidence 4467789999887643221 2222233 34555 89999999998
Q ss_pred Hhcc
Q 023080 273 ALNL 276 (287)
Q Consensus 273 ~l~~ 276 (287)
+|..
T Consensus 181 ii~~ 184 (186)
T PRK14737 181 IICG 184 (186)
T ss_pred HHhc
Confidence 8864
No 93
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.31 E-value=1.5e-11 Score=98.25 Aligned_cols=103 Identities=26% Similarity=0.313 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|.|+|||||||+|+.|++++|+++++.+.+..+... ........ ...+...+...+..... ..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~------~~~~~~~~------~~~i~~~l~~~~~~~~~--~~ 66 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG------KLASEVAA------IPEVRKALDERQRELAK--KP 66 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH------HHHHHhcc------cHhHHHHHHHHHHHHhh--CC
Confidence 478999999999999999999999999999744322111 00000000 00111122222222111 24
Q ss_pred cEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 136 GFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 136 g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.||+||...... + ....+++|||++|++...+|+..|
T Consensus 67 ~~Vidg~~~~~~----~--~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 67 GIVLEGRDIGTV----V--FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred CEEEEeeeeeeE----E--cCCCCEEEEEECCHHHHHHHHHHH
Confidence 799998643211 0 224689999999999999999884
No 94
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.30 E-value=4.8e-11 Score=101.59 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=67.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE 127 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~ 127 (287)
..++.+|.|.|++||||||+++.|++.++ +.+++.|++...... ..........+........+.+...+.....
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH--LSFEERVKTNYDHPDAFDHDLLIEHLKALKA 80 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc--CCHHHhcccCccCcccccHHHHHHHHHHHHc
Confidence 45788999999999999999999999983 456777776542100 0000000000000011112222222222111
Q ss_pred hc-------------------ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 128 AG-------------------QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 128 ~~-------------------~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.. .......+|+||...-.. ..+. ..+|.+|||++|.++.+.|...|.
T Consensus 81 ~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~--~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 81 GKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR--DLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred CCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh--hhhceeEEEeCChhHHHHHHHhhc
Confidence 00 011123578888643211 0111 136899999999999999998875
No 95
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.30 E-value=7.1e-11 Score=97.81 Aligned_cols=113 Identities=22% Similarity=0.097 Sum_probs=64.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
..+|.+|+|+|+|||||||+++.|+++++ ..+++. +.+++.+.........-.+. ......+...
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~-d~~r~~~~~~~~~~~~~~~~---------~~~~~~l~~~ 73 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG-DELREILGHYGYDKQSRIEM---------ALKRAKLAKF 73 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec-HHHHhhcCCCCCCHHHHHHH---------HHHHHHHHHH
Confidence 45778999999999999999999999985 556665 34454332211000000000 0011112222
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
+... +..+|+||......-.........+.++|||+++++++.+|+.+
T Consensus 74 l~~~----g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 74 LADQ----GMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHhC----CCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 2221 35688887532211112222334456889999999999999753
No 96
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.29 E-value=8.6e-11 Score=94.65 Aligned_cols=114 Identities=24% Similarity=0.221 Sum_probs=70.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc---HHHHHHHHHHHHHhcccC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS---DEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~---~~~~~~~l~~~l~~~~~~ 132 (287)
+|+|+|+|||||||+|+.|++.++..+++.|++...... ..+..|...+ .+.....+..........
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 378999999999999999999999999999776543110 0011111111 011111111111111001
Q ss_pred CCccEEEeCCCCCHHHHHHHHHh--cCccEEEEEecCHHHHHHHHhCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEV--MDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~--~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+..+|+|...........+... +.+-.+|+|+++.+++.+|+.+|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 14678898654555555555554 234568999999999999999884
No 97
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.28 E-value=6.3e-11 Score=112.80 Aligned_cols=109 Identities=19% Similarity=0.271 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
|.|+|+|+|||||||+++.|++++|++++++|+++.+. .+..+.+++.. |+....+...+.+.+.+...
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~------~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~---- 70 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR------EGRSVRRIFEEDGEEYFRLKEKELLRELVERD---- 70 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH------cCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcC----
Confidence 46999999999999999999999999999999988762 23334444432 33333333344444332221
Q ss_pred CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+|-.| .+....+.+.+.. ..+|||+++.+++.+|+..+
T Consensus 71 -~~Vis~Gggvv~~~~~r~~l~~----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 71 -NVVVATGGGVVIDPENRELLKK----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred -CEEEECCCccccChHHHHHHhc----CeEEEEECCHHHHHHHhccC
Confidence 2233233 2333444444543 45899999999999999764
No 98
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.27 E-value=2.1e-10 Score=97.16 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=97.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcC---Cc----hHHHHHHHHhcCCcccH-----HH-
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASS---GS----LSQQLSEIVNQGKLVSD-----EI- 117 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~---~~----~~~~i~~~l~~g~~~~~-----~~- 117 (287)
+.++..|+|+||+||||||+++.|+..++...+......|....+. .. ....+...+..+.++.. ..
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 4567789999999999999999999988643333333332211000 00 12333444444433211 00
Q ss_pred --HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 118 --IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 118 --~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
....+...+.. +..+|+|.-+... ..+.. ...+-.++++.++.+++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~-----g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~--------------- 138 (205)
T PRK00300 82 GTPRSPVEEALAA-----GKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRG--------------- 138 (205)
T ss_pred cCcHHHHHHHHHc-----CCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcC---------------
Confidence 12223333333 3567888644332 23333 2222234445667889999998874
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
.++.+.+++|+..+..... ++...+.+ .++ .+++++..++..++
T Consensus 139 -----------------------------~~~~~~i~~rl~~~~~~~~----~~~~~d~v-i~n--~~~e~~~~~l~~il 182 (205)
T PRK00300 139 -----------------------------TDSEEVIARRLAKAREEIA----HASEYDYV-IVN--DDLDTALEELKAII 182 (205)
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHHH----hHHhCCEE-EEC--CCHHHHHHHHHHHH
Confidence 4567889999998876543 33333433 343 48999999999999
Q ss_pred ccc
Q 023080 275 NLD 277 (287)
Q Consensus 275 ~~~ 277 (287)
...
T Consensus 183 ~~~ 185 (205)
T PRK00300 183 RAE 185 (205)
T ss_pred HHH
Confidence 875
No 99
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.27 E-value=1e-10 Score=95.20 Aligned_cols=176 Identities=15% Similarity=0.123 Sum_probs=108.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH-------H
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS-------K 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~-------~ 124 (287)
.+..+|++.|..+|||||++..|.+.+. +..+...+ .......+.+|+.+..++.+..-+++.+++-++. .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l-~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAEL-LRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccChHHh-hhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4778999999999999999999999883 33322233 3334567789999999999888888877654431 1
Q ss_pred HHHhcccCCCccEEEeCCCC-----------CHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccc
Q 023080 125 RLEAGQAGGESGFILDGFPR-----------TVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVAN 192 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~-----------~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~ 192 (287)
.+...... +..+|+|-|-- ..++....+. ...||+++||+++++.+ .|..+++...
T Consensus 81 ~i~e~l~k-g~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~-a~rggfG~Er---------- 148 (208)
T KOG3327|consen 81 LIKEKLAK-GTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDA-ARRGGFGEER---------- 148 (208)
T ss_pred HHHHHHhc-CCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHH-HHhcCcchhH----------
Confidence 12221222 45688885421 1222222222 23599999999999994 3333432100
Q ss_pred ccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHH
Q 023080 193 INVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLE 272 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~ 272 (287)
.++.+..++-...|.+.. -.+...++.+|+..++|+|++.|..
T Consensus 149 -------------------------------ye~v~fqekv~~~~q~l~------r~e~~~~~~vDAs~sve~V~~~V~~ 191 (208)
T KOG3327|consen 149 -------------------------------YETVAFQEKVLVFFQKLL------RKEDLNWHVVDASKSVEKVHQQVRS 191 (208)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHH------hccCCCeEEEecCccHHHHHHHHHH
Confidence 112222222233332221 1123468999999999999999987
Q ss_pred Hhccch
Q 023080 273 ALNLDE 278 (287)
Q Consensus 273 ~l~~~~ 278 (287)
++++-.
T Consensus 192 i~e~~~ 197 (208)
T KOG3327|consen 192 LVENVL 197 (208)
T ss_pred HHHHhc
Confidence 776543
No 100
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.26 E-value=6e-11 Score=97.18 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=89.1
Q ss_pred EcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHH---HHHHHHHHHHHhcccCCCcc
Q 023080 60 LGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDE---IIFNLLSKRLEAGQAGGESG 136 (287)
Q Consensus 60 ~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~---~~~~~l~~~l~~~~~~~~~g 136 (287)
+|++||||||+++.|++.+|..+++.|.+..... +.. ...|....++ .....+..........++.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~---------~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN---------IEK-MASGEPLNDDDRKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh---------hcc-ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCce
Confidence 5999999999999999999999999865421100 000 0011111110 11111111111100111234
Q ss_pred EEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccc
Q 023080 137 FILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCM 216 (287)
Q Consensus 137 ~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 216 (287)
+|+..+. ...+.+.+.....+-.+|||++|.+++.+|+..|.-+
T Consensus 71 viv~s~~-~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~----------------------------------- 114 (163)
T PRK11545 71 LIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH----------------------------------- 114 (163)
T ss_pred EEEEecc-hHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC-----------------------------------
Confidence 5554443 3334444444444557899999999999999998521
Q ss_pred cccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 217 SKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 217 ~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
. .+.+.+..++..+.... .....++.||+..+++++..++...|+.
T Consensus 115 ------~-a~~~vl~~Q~~~~ep~~-------~~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 115 ------F-FKTQMLVTQFETLQEPG-------ADETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred ------C-CCHHHHHHHHHHcCCCC-------CCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 0 13455555444442110 0112478899999999999999988853
No 101
>PRK06547 hypothetical protein; Provisional
Probab=99.24 E-value=1.2e-11 Score=102.17 Aligned_cols=125 Identities=19% Similarity=0.174 Sum_probs=71.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHH-HHhcCCcccH--HHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSE-IVNQGKLVSD--EIIFNLLSKRLE 127 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~-~l~~g~~~~~--~~~~~~l~~~l~ 127 (287)
+.++++|+|.|++||||||+++.|++.+++++++.|++....- ......+.+.+ .+..|+.... +........ +.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~-~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGD-WV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCC-cE
Confidence 3578899999999999999999999999999999988864310 10111112222 2223322100 000000000 00
Q ss_pred hcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 128 AGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
....+..+|++|..........+.......++|||++|.++.++|+..|-
T Consensus 90 --~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 --SVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred --EeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 01113468899853332222222111223389999999999999999984
No 102
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.23 E-value=6.4e-12 Score=97.37 Aligned_cols=110 Identities=28% Similarity=0.348 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-cCCC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ-AGGE 134 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~-~~~~ 134 (287)
+|+|.|+|||||||+|+.|++++|++++++|++++..... . ...+...........+...+.... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWI--E--------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHC--H--------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEecccc--c--------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 5899999999999999999999999999999954211000 0 001111001112222222222220 0113
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..||+||.-. ... .+ .....+.+|++.++.++..+|+.+|+
T Consensus 71 ~~~ii~g~~~-~~~--~~-~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 71 DNWIIDGSYE-SEM--EI-RLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp -EEEEECCSC-HCC--HS-CCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred CeEEEeCCCc-cch--hh-hhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 5799999322 110 11 11124578999998886666665553
No 103
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.23 E-value=5.6e-10 Score=93.73 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
+|+|.|++||||||+++.|++++|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999998876544
No 104
>PRK12338 hypothetical protein; Provisional
Probab=99.22 E-value=7.5e-10 Score=99.16 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC--ch----H-HHHH--HHHhcCC-ccc-------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG--SL----S-QQLS--EIVNQGK-LVS------- 114 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~--~~----~-~~i~--~~l~~g~-~~~------- 114 (287)
.+|.+|+|.|+|||||||+|+.||+++|+.++..+|.+++.+.... ++ . .... ..+.... ..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 3678999999999999999999999999999977799998765411 11 0 0000 1111110 011
Q ss_pred -----HHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080 115 -----DEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 115 -----~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+.+...+...+.... ..+..+|++|.-.............. +-.+++|..+.+..++|+..|.
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~-~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~ 151 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAV-TDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRA 151 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhh
Confidence 1222223222222211 22568999997544443332111111 2234555688899999999885
No 105
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.21 E-value=2.5e-10 Score=95.30 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
..++|+|.|+.|+||||++++||+++|..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 3578999999999999999999999997654
No 106
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.16 E-value=6.8e-10 Score=105.59 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=38.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
..++++|.|.||+||||||+++.|+++||+.+++.|++.|..
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 347789999999999999999999999999999999998874
No 107
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.16 E-value=6.7e-10 Score=91.85 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=62.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
.++.+|+|+|+|||||||+++.|+..+. +.+++.|.+ ++.+..+-.. .......+. ....+...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r~~~~~---------~~~~~a~~ 71 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDRDTNIR---------RIGFVANL 71 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhHHHHHH---------HHHHHHHH
Confidence 3567899999999999999999999882 566777544 4433211110 000000000 00112222
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
+... +..+++|+........+.+......-.+|||++|.+++.+|.
T Consensus 72 ~~~~----g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 LTRH----GVIVLVSAISPYRETREEVRANIGNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHhC----CCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC
Confidence 2221 345667764223333444444433446899999999999994
No 108
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.16 E-value=1.9e-10 Score=95.43 Aligned_cols=162 Identities=16% Similarity=0.137 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcC---Cc----hHHHHHHHHhcCCcccHH--------HHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASS---GS----LSQQLSEIVNQGKLVSDE--------IIF 119 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~---~~----~~~~i~~~l~~g~~~~~~--------~~~ 119 (287)
.+|+|+||+||||||+++.|++.++..++......|...... .. ....+...+..+.++... ...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 478999999999999999999987655555434333211100 00 112334444444433211 112
Q ss_pred HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCC
Q 023080 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG 198 (287)
Q Consensus 120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~ 198 (287)
..+...+.+ +..+|+|.-+. ....+.. +..+..++++..+.+.+.+|+..|.
T Consensus 82 ~~i~~~~~~-----g~~vi~d~~~~---~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~------------------- 134 (180)
T TIGR03263 82 SPVEEALAA-----GKDVLLEIDVQ---GARQVKKKFPDAVSIFILPPSLEELERRLRKRG------------------- 134 (180)
T ss_pred HHHHHHHHC-----CCeEEEECCHH---HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC-------------------
Confidence 334444444 36788885432 2333333 3333455555777899999998764
Q ss_pred CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
++..+.++.|++.+..... + ......+ |.++ ++++...++...+.
T Consensus 135 -------------------------~~~~~~i~~rl~~~~~~~~----~-~~~~d~~-i~n~-~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 135 -------------------------TDSEEVIERRLAKAKKEIA----H-ADEFDYV-IVND-DLEKAVEELKSIIL 179 (180)
T ss_pred -------------------------CCCHHHHHHHHHHHHHHHh----c-cccCcEE-EECC-CHHHHHHHHHHHHh
Confidence 4567788888887764322 1 1222333 3433 78999999988764
No 109
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.08 E-value=3.4e-09 Score=91.35 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~ 91 (287)
+++|.|.|++||||||+++.|+++||+.+++.+.++|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57899999999999999999999999999999998776
No 110
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.07 E-value=5.2e-09 Score=89.62 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
++.|.|.||+||||||+++.|++++|+.+++.+++.|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 468999999999999999999999999999999888764
No 111
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.04 E-value=6.3e-09 Score=87.21 Aligned_cols=39 Identities=31% Similarity=0.373 Sum_probs=36.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
.+.|.|-||.||||||+|+.||++||+.+++++.+.|..
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 378999999999999999999999999999999988864
No 112
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.04 E-value=2.6e-09 Score=103.57 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC------CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--H
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV------PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--L 122 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~------~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l 122 (287)
..++..|+|+|+|||||||+|+.|++.++. .+++.| .++..+..+..+...-++. ....+ +
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er~~----------~~~~l~~~ 457 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDRDL----------NILRIGFV 457 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHHHH----------HHHHHHHH
Confidence 346778999999999999999999999986 778874 4455443221111111100 01111 1
Q ss_pred HHHHHhcccCCCccEEEeC-CCCCHH---HHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 123 SKRLEAGQAGGESGFILDG-FPRTVK---QAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg-~p~~~~---~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
...+... +.++|+|. +|.... ..+.+...+ .-++|||++|.+++.+|.
T Consensus 458 a~~v~~~----Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 458 ASEITKN----GGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRD 509 (568)
T ss_pred HHHHHhC----CCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhc
Confidence 1112111 46778885 443321 122222222 125799999999999996
No 113
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.04 E-value=2e-09 Score=91.55 Aligned_cols=123 Identities=17% Similarity=0.259 Sum_probs=66.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE 127 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~ 127 (287)
++++.+|+|.|++||||||+++.|+..++ +.+++.|+.+...... .........+..-...+.+.+...+.....
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--EMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--CHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 45678899999999999999999999875 4567776654321000 000000000000000111111111111110
Q ss_pred h-----------------c--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 128 A-----------------G--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 128 ~-----------------~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
. . ......-||+||++.... ..+.. .+|.+||++++.++.+.|+..|.
T Consensus 81 g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~~--~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLRD--LMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred CCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHHH--hCCEEEEEECChhHHHHHHHHHH
Confidence 0 0 001134688998755322 11221 37899999999999999998874
No 114
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.01 E-value=8e-09 Score=102.29 Aligned_cols=41 Identities=34% Similarity=0.417 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
.+.++|.|.||+||||||+++.||++||+++++++.+.|..
T Consensus 440 ~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 440 DRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 34668999999999999999999999999999999998875
No 115
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.01 E-value=3.2e-09 Score=89.67 Aligned_cols=123 Identities=25% Similarity=0.255 Sum_probs=68.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcC------C-----------chHHHHHHHHhcCC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASS------G-----------SLSQQLSEIVNQGK 111 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~------~-----------~~~~~i~~~l~~g~ 111 (287)
.++.+|.|.|++||||||+|+.|++.++.. .|+.|++....-... . .+.+.+.. +.+|+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~-L~~g~ 84 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD-LKQGK 84 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH-HHcCC
Confidence 456889999999999999999999999855 778777765311100 0 00111111 22233
Q ss_pred cccHHHHHHHHHHHH-HhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 112 LVSDEIIFNLLSKRL-EAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 112 ~~~~~~~~~~l~~~l-~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+..-...-....+. ......+..-+|++|+..-.+ +.+.. ..|+-||++++.++.+.|...|.
T Consensus 85 ~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~--~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 85 PVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD--LMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred cccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh--hcCEEEEEeCCccHHHHHHHHHH
Confidence 221111100000000 000011245788999643322 11221 26799999999999888887774
No 116
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.00 E-value=2.1e-08 Score=89.16 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-eeehhHHHHHHHHcCCc------hHHHHHHHHh--cCCcccH-------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP-HIATGDLVREELASSGS------LSQQLSEIVN--QGKLVSD------- 115 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~-~i~~d~llr~~~~~~~~------~~~~i~~~l~--~g~~~~~------- 115 (287)
.+|+.|+|.|++||||||+|..||++||.. +++ .|.+|+.+..... +.......+. .+..-++
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~ 168 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGF 168 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence 478899999999999999999999999998 456 4777765543110 0000000000 0001111
Q ss_pred ----HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEec-CHHHHHHHHhCCC
Q 023080 116 ----EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLKL-CEDVLLEKCLGRR 179 (287)
Q Consensus 116 ----~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~-~~e~l~~Rl~~R~ 179 (287)
+.+...+...+...-.. +...|++|.-........+... .++ +.++|.+ +.+...+|+..|.
T Consensus 169 ~~~~~~v~~gi~~~I~~~~~~-g~s~IiEGvhl~P~~i~~~~~~-~~~~i~~~l~i~~ee~h~~RF~~R~ 236 (301)
T PRK04220 169 ERHVEPVSVGVEAVIERALKE-GISVIIEGVHIVPGFIKEKYLE-NPNVFMFVLTLSDEEAHKARFYARA 236 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCcEEEecCCCCHHHHHHhhhc-CCCEEEEEEEECCHHHHHHHHHHHH
Confidence 11111222222222112 5789999987766654432222 233 3455554 5688999998774
No 117
>COG0645 Predicted kinase [General function prediction only]
Probab=99.00 E-value=3e-08 Score=80.17 Aligned_cols=114 Identities=23% Similarity=0.285 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HHHHH---HHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IFNLL---SKRLE 127 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~~~l---~~~l~ 127 (287)
..+++.|.|||||||+|+.|++.+|..+|.+ |.+++.+..-+..... ..| ....+. +..++ ...+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrs-D~irk~L~g~p~~~r~-----~~g-~ys~~~~~~vy~~l~~~A~l~l~ 74 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRS-DVIRKRLFGVPEETRG-----PAG-LYSPAATAAVYDELLGRAELLLS 74 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEeh-HHHHHHhcCCcccccC-----CCC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999 5556655541110000 011 111111 11222 12222
Q ss_pred hcccCCCccEEEeCCCCCHHHHHHHHHhc----CccEEEEEecCHHHHHHHHhCCCc
Q 023080 128 AGQAGGESGFILDGFPRTVKQAEILEEVM----DIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~~----~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
. +..+|+|+......+........ -+-..|.++++.+++..|+..|..
T Consensus 75 ~-----G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 75 S-----GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred C-----CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 2 57899998766666555544432 244569999999999999999964
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.99 E-value=6.1e-08 Score=78.00 Aligned_cols=115 Identities=23% Similarity=0.207 Sum_probs=71.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+++++++|.||+||||+++.+.+.+ +...++.++++-+.....+.. ...+.+. -+|.+....+...+.......
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv--e~rD~~R---klp~e~Q~~lq~~Aa~rI~~~ 78 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV--EHRDEMR---KLPLENQRELQAEAAKRIAEM 78 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc--ccHHHHh---cCCHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999998 888899999987754432221 1122222 134444443333332221111
Q ss_pred CCccEEEeCC----------CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 133 GESGFILDGF----------PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 133 ~~~g~Ildg~----------p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
..-+|+|+. |.... ..-....||++|.|..+++.++.|-.+
T Consensus 79 -~~~iivDtH~~IkTP~GylpgLP~---~Vl~~l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 79 -ALEIIVDTHATIKTPAGYLPGLPS---WVLEELNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred -hhceEEeccceecCCCccCCCCcH---HHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence 122788842 22222 223344699999999999988877654
No 119
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.98 E-value=4e-10 Score=87.72 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=57.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-cCCC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ-AGGE 134 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~-~~~~ 134 (287)
|+|.|+|||||||+|+.|+++++ ..+.......... ...-............+....++........ ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKG 73 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccC
Confidence 78999999999999999999982 2222222211110 0000001122223333333333322222110 1114
Q ss_pred ccEEEeCCCCCHHHHHHHHHhcCccEE-EEEecCHHHHHHHHhCCCc
Q 023080 135 SGFILDGFPRTVKQAEILEEVMDIDLV-VNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~~~d~v-i~L~~~~e~l~~Rl~~R~~ 180 (287)
..+|+|+........ ...... |+|+|+++++.+|+..|..
T Consensus 74 ~~~iid~~~~~~~~~------~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 74 RNIIIDGILSNLELE------RLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp SCEEEEESSEEECET------TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred CcEEEecccchhccc------ccceeeEEEEECCHHHHHHHHHhCCC
Confidence 678999865442210 011223 9999999999999999864
No 120
>PRK07667 uridine kinase; Provisional
Probab=98.97 E-value=2.5e-09 Score=90.05 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHc----CCchH-------------HHHHHHHhcC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELAS----SGSLS-------------QQLSEIVNQG 110 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~----~~~~~-------------~~i~~~l~~g 110 (287)
.+.+|.|.|++||||||+|+.|++.++ ..+++.|+++...... ..... ..+-..+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 448899999999999999999999873 4588999877654321 11100 0010111122
Q ss_pred CcccHHHHHHHHHHHHHhc-ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 111 KLVSDEIIFNLLSKRLEAG-QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 111 ~~~~~~~~~~~l~~~l~~~-~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+....+........... .......+|+||...... .+.. .+|.+|++++|+++.++|+..|
T Consensus 96 ~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~~---~~~~--~~d~~v~V~~~~~~~~~R~~~r 159 (193)
T PRK07667 96 TKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQRK---EWRD--FFHYMVYLDCPRETRFLRESEE 159 (193)
T ss_pred CeEEEeeeccccccccccceecCCCCEEEEEehhhhhh---hHHh--hceEEEEEECCHHHHHHHHhcc
Confidence 1110000000000000000 011124678888543211 1221 3789999999999999999876
No 121
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.96 E-value=2.7e-09 Score=106.58 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
+.|.|.|||||||||+|+.||++||+.+++++.+.|..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 37899999999999999999999999999999988874
No 122
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.96 E-value=1.6e-08 Score=84.34 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=63.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
.++.+|+|+|++||||||+++.|+..+ | ..+++.| .++..+..+... .......+. .+.. +...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~~~~~~~~~~~--------~~~~-~~~~ 85 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGFSEEDRKENIR--------RIGE-VAKL 85 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCCCHHHHHHHHH--------HHHH-HHHH
Confidence 467899999999999999999999987 2 3456654 444433221111 110000000 0111 1111
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHH
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEK 174 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~R 174 (287)
+... +..+|+|.......+...+..... +-.+|||++|.+++.+|
T Consensus 86 ~~~~----G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 86 FVRN----GIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHcC----CCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 2221 467888875444555555554432 34679999999999988
No 123
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.96 E-value=7.8e-08 Score=83.17 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=30.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
...+..+|++.|+.|||||++|+.||+++|+.|+-
T Consensus 67 f~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP 101 (393)
T KOG3877|consen 67 FHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFP 101 (393)
T ss_pred hcccceEEEEeCCcccCchhHHHHHHHHhCCcccc
Confidence 34467899999999999999999999999987763
No 124
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.94 E-value=2.6e-09 Score=89.17 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVRE 91 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~ 91 (287)
+|.|.|++||||||+|+.|++.+ ++.+|+.|++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 47899999999999999999998 7899999988754
No 125
>PRK06696 uridine kinase; Validated
Probab=98.93 E-value=2.4e-09 Score=92.21 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCe--eehhHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPH--IATGDLVRE 91 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~--i~~d~llr~ 91 (287)
..+|++|+|.|++||||||+|+.|++.+ |..+ +++|++...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 3478899999999999999999999999 5544 457777643
No 126
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.93 E-value=3.7e-08 Score=87.68 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc-cc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG-QA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~-~~ 131 (287)
.+.+|+|+|++||||||+++.|. ..|+.+++--. ...+..++.. .... ..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~---------------------------~~L~~~l~~~-~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP---------------------------PSLLPKLVEL-LAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC---------------------------HHHHHHHHHH-HHhcCCC
Confidence 34579999999999999999996 45877664311 1111111111 1111 01
Q ss_pred CCCccEEEeCCCCC-----HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 132 GGESGFILDGFPRT-----VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 132 ~~~~g~Ildg~p~~-----~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
. .-.+++|-.... .+....+...+....+|||+++.+++++|+..+
T Consensus 56 ~-~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~ 106 (288)
T PRK05416 56 R-KVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSET 106 (288)
T ss_pred C-CeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhc
Confidence 1 235677753221 122233333333446799999999999999753
No 127
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.92 E-value=1e-08 Score=86.50 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVR 90 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr 90 (287)
+|.|.|++||||||+++.|+..+ ++.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 47899999999999999999987 467888887653
No 128
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.92 E-value=1.2e-08 Score=97.52 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=75.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
..+|..|++.|+|||||||+|+.+++..|+.+++.|.+- . ...........|..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-~-----------------------~~~~~~~a~~~L~~-- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-S-----------------------TQNCLTACERALDQ-- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-H-----------------------HHHHHHHHHHHHhC--
Confidence 346788999999999999999999999999999997651 1 01122334445554
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCc
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
+..+|+|....+..+...+... +.+-.+|++++|.+++++|+..|..
T Consensus 420 ---G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 ---GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred ---CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 4789999977776666555443 2355688999999999999998853
No 129
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=2.3e-08 Score=84.43 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=59.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHH--HH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLL--SK 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l--~~ 124 (287)
.+|.+|+|+|++||||||+++.|+..+ +..+++.|++- ..+.....+. .. -..+.+..+. ..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~~~~-------~~---~~~~~~~~l~~~a~ 90 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDLGFS-------DA---DRKENIRRVGEVAK 90 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcCCcC-------cc---cHHHHHHHHHHHHH
Confidence 477899999999999999999999986 34566654443 3221110000 00 0011111111 11
Q ss_pred HHHhcccCCCccEEEeCCCCC-HHHHHHHHHhc-CccE-EEEEecCHHHHHHH
Q 023080 125 RLEAGQAGGESGFILDGFPRT-VKQAEILEEVM-DIDL-VVNLKLCEDVLLEK 174 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~-~~~~~~l~~~~-~~d~-vi~L~~~~e~l~~R 174 (287)
.+... ..+|+..|... ....+.+.... ...+ +|||++|.+++.+|
T Consensus 91 ~~~~~-----G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 91 LMVDA-----GLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHhhC-----CCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 12111 23445555442 34444444433 2344 79999999999999
No 130
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.89 E-value=4.3e-08 Score=81.56 Aligned_cols=111 Identities=24% Similarity=0.231 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhH-HHHHHHHc-CCc-hHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGD-LVREELAS-SGS-LSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~-llr~~~~~-~~~-~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
+.|+++|+|||||||+|+.|++.+ +..+++... ..+-.... .-+ ..+...+.+. +-..+++..++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~-------ks~~rlldSalk- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFL-------KSVERLLDSALK- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHH-------HHHHHHHHHHhc-
Confidence 468899999999999999999987 233333221 22211100 001 1111112111 122334444444
Q ss_pred cccCCCccEEEeC--CCCCHH-HHHHH-HHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 129 GQAGGESGFILDG--FPRTVK-QAEIL-EEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 129 ~~~~~~~g~Ildg--~p~~~~-~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
+.-+|+|. |..... |.... .....+..+||+.+|.+++++|-..|
T Consensus 74 -----n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~er 122 (261)
T COG4088 74 -----NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRER 122 (261)
T ss_pred -----ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccC
Confidence 24677775 222222 22111 12234778999999999999988665
No 131
>PTZ00301 uridine kinase; Provisional
Probab=98.88 E-value=1.5e-08 Score=86.35 Aligned_cols=117 Identities=18% Similarity=0.212 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHHHHHHcCCchHHHHHHHHhcC--CcccHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVREELASSGSLSQQLSEIVNQG--KLVSDEIIFNLLSK 124 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g--~~~~~~~~~~~l~~ 124 (287)
-++|.|.|+|||||||+|+.|++.++ +.+++.|++.+... .-+... ......+ ..+..+.+...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~--~~~~~~--~~~~~~d~p~a~D~~~l~~~l~- 77 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQS--NIPESE--RAYTNYDHPKSLEHDLLTTHLR- 77 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcc--cCCHHH--hcCCCCCChhhhCHHHHHHHHH-
Confidence 36899999999999999999988762 23566677654311 000000 0000001 0011111222221
Q ss_pred HHHhc--------------------ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 125 RLEAG--------------------QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 125 ~l~~~--------------------~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+... ......-+|++|+..- .. ..+.. -.|+.||++++.++++.|...|.
T Consensus 78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l-~~-~~l~~--l~D~~ifvd~~~d~~~~Rr~~Rd 148 (210)
T PTZ00301 78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLF-TN-AELRN--EMDCLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhh-CC-HHHHH--hCCEEEEEeCChhHHHHHHHhhh
Confidence 11111 0011345677885431 11 11222 26889999999999999998885
No 132
>PHA03132 thymidine kinase; Provisional
Probab=98.87 E-value=3.7e-08 Score=94.55 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=70.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHHH----------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEIIF---------- 119 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~~---------- 119 (287)
+.++|+|.|+.||||||+++.|++.+|..++-+.+-......-.+..+..+.+.+.++. .-+...+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 37899999999999999999999998555543322111100001234556666554332 11111111
Q ss_pred HHHHHHHHh---------cccCCCccEEEeCCCCCHH----------------H-HHHHHHhc--CccEEEEEecCHHHH
Q 023080 120 NLLSKRLEA---------GQAGGESGFILDGFPRTVK----------------Q-AEILEEVM--DIDLVVNLKLCEDVL 171 (287)
Q Consensus 120 ~~l~~~l~~---------~~~~~~~g~Ildg~p~~~~----------------~-~~~l~~~~--~~d~vi~L~~~~e~l 171 (287)
..+..++.. +....+..+|+|-++.... . ...+..+. .||++|||+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 011111111 1112245678885442211 1 12222222 489999999999999
Q ss_pred HHHHhCCC
Q 023080 172 LEKCLGRR 179 (287)
Q Consensus 172 ~~Rl~~R~ 179 (287)
++|+.+|.
T Consensus 416 lkRIkkRg 423 (580)
T PHA03132 416 LRRVKKRG 423 (580)
T ss_pred HHHHHhcC
Confidence 99999884
No 133
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.87 E-value=5e-08 Score=78.65 Aligned_cols=107 Identities=21% Similarity=0.143 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--HHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--LSKRLEA 128 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l~~~l~~ 128 (287)
+|+|+|+|||||||+++.|++.+ +. .+++. +-++..+......... . ..+.+..+ +...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~-d~~r~~l~~~~~~~~~--------~--~~~~~~~~~~~a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG-DNVRHGLNKDLGFSRE--------D--REENIRRIAEVAKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC-HHHHHhhhhccCCCcc--------h--HHHHHHHHHHHHHHHHh
Confidence 37899999999999999999998 54 34554 4444433221110000 0 00111111 1111222
Q ss_pred cccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhC
Q 023080 129 GQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
. +..+|+|.......+...+.... .+-.+|||++|.+++.+|-.+
T Consensus 70 ~----G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 A----GLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred C----CCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 1 45788887544545454444443 345679999999999998654
No 134
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.85 E-value=2e-08 Score=83.66 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=92.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC----CeeehhHHHHHHHHcCCc----hHHHHHHHHhcCCcccHH--------H
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV----PHIATGDLVREELASSGS----LSQQLSEIVNQGKLVSDE--------I 117 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~----~~i~~d~llr~~~~~~~~----~~~~i~~~l~~g~~~~~~--------~ 117 (287)
+..|+|+||+||||||++++|.+.++- ++-.+..-.|....++.. ....+......|.++... +
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 345889999999999999999998753 222221221110001111 123555555555543211 1
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCcccccccccc
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANINVK 196 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~ 196 (287)
....+...+.. ++.+|+|.-|. -+..+......-++|||.++ .+.+.+|+..|.
T Consensus 82 ~~~~i~~~~~~-----gk~~il~~~~~---g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~----------------- 136 (183)
T PF00625_consen 82 SKSAIDKVLEE-----GKHCILDVDPE---GVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRG----------------- 136 (183)
T ss_dssp EHHHHHHHHHT-----TTEEEEEETHH---HHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTT-----------------
T ss_pred ccchhhHhhhc-----CCcEEEEccHH---HHHHHHhcccCceEEEEEccchHHHHHHHhccc-----------------
Confidence 22334444444 35678874433 34445544333367888766 567777776553
Q ss_pred CCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 197 GGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
++..+.+..|+..+..... ++...+ .+ |.+ .++++.+.+|.++|+.
T Consensus 137 ---------------------------~~~~~~i~~r~~~~~~~~~----~~~~fd-~v-i~n-~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 137 ---------------------------DESEEEIEERLERAEKEFE----HYNEFD-YV-IVN-DDLEEAVKELKEIIEQ 182 (183)
T ss_dssp ---------------------------HCHHHHHHHHHHHHHHHHG----GGGGSS-EE-EEC-SSHHHHHHHHHHHHHH
T ss_pred ---------------------------cccHHHHHHHHHHHHHHHh----HhhcCC-EE-EEC-cCHHHHHHHHHHHHHh
Confidence 4456677778777765433 333323 22 333 3899999999998874
No 135
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.84 E-value=2.5e-07 Score=86.49 Aligned_cols=44 Identities=39% Similarity=0.528 Sum_probs=36.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS 95 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~ 95 (287)
.+|.+|+|+|++||||||++..||.++|+.++-..|.+++.+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~ 296 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRA 296 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHh
Confidence 46899999999999999999999999999855444777775543
No 136
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.83 E-value=7.6e-08 Score=96.91 Aligned_cols=40 Identities=28% Similarity=0.338 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
..++|.|.||+||||||+|+.||++||+.+++++.++|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3358999999999999999999999999999999999875
No 137
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.82 E-value=3.3e-08 Score=79.87 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCch-HHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSL-SQQLSEIVNQGKLVSDEIIFNLLSKRL 126 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~g~~~~~~~~~~~l~~~l 126 (287)
+|..|.|+|.|||||||+|+.|.++| | ..+++. |.+|..+...-.. .+.-.+.+. -...+...+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg-D~lR~~l~~dl~fs~~dR~e~~r---------r~~~~A~ll 70 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG-DNLRHGLNADLGFSKEDREENIR---------RIAEVAKLL 70 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH-HHHCTTTTTT--SSHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC-cchhhccCCCCCCCHHHHHHHHH---------HHHHHHHHH
Confidence 46789999999999999999999998 3 345666 4445433221111 111111111 111223333
Q ss_pred HhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080 127 EAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl 175 (287)
... +..+|++..--..+..+....... .-+-||++||.+++.+|=
T Consensus 71 ~~~----G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 71 ADQ----GIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHT----TSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HhC----CCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 332 345666543222333333333322 236799999999999994
No 138
>PLN02348 phosphoribulokinase
Probab=98.81 E-value=2.8e-08 Score=91.15 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
..++.+|.|.|++||||||+++.|++.++
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35778999999999999999999999986
No 139
>PLN02772 guanylate kinase
Probab=98.79 E-value=9.5e-08 Score=87.65 Aligned_cols=172 Identities=17% Similarity=0.141 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CCc----hHHHHHHHHhcCCcccHHH-------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SGS----LSQQLSEIVNQGKLVSDEI------- 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~~----~~~~i~~~l~~g~~~~~~~------- 117 (287)
....|+|+||+|+||+|+.++|.+.+.. ..+.+....|..-.. +.. ....+...+.+|.++....
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4457899999999999999999987632 223333333331111 000 1134556666666654322
Q ss_pred -HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccccc
Q 023080 118 -IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVK 196 (287)
Q Consensus 118 -~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~ 196 (287)
-...+...+.. ++.+|+|--+....+.... ...+-.++++..+.+++.+|+..|.
T Consensus 214 Tsk~~V~~vl~~-----Gk~vILdLD~qGar~Lr~~--~l~~v~IFI~PPSlEeLe~RL~~RG----------------- 269 (398)
T PLN02772 214 TSIEAVEVVTDS-----GKRCILDIDVQGARSVRAS--SLEAIFIFICPPSMEELEKRLRARG----------------- 269 (398)
T ss_pred ccHHHHHHHHHh-----CCcEEEeCCHHHHHHHHHh--cCCeEEEEEeCCCHHHHHHHHHhcC-----------------
Confidence 22333444444 3678887544444333221 1222233333445789999998774
Q ss_pred CCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 197 GGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.++++.+++|++.+....... .+......+ |.+. ++++.++++.++|..
T Consensus 270 ---------------------------teseE~I~kRL~~A~~Ei~~~--~~~~~fD~v-IvND-dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 270 ---------------------------TETEEQIQKRLRNAEAELEQG--KSSGIFDHI-LYND-NLEECYKNLKKLLGL 318 (398)
T ss_pred ---------------------------CCCHHHHHHHHHHHHHHHhhc--cccCCCCEE-EECC-CHHHHHHHHHHHHhh
Confidence 456788999999986543210 011111233 3333 899999999999987
Q ss_pred chh
Q 023080 277 DEY 279 (287)
Q Consensus 277 ~~~ 279 (287)
+..
T Consensus 319 ~~~ 321 (398)
T PLN02772 319 DGL 321 (398)
T ss_pred cCc
Confidence 653
No 140
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.75 E-value=3e-08 Score=83.81 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=63.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cc----cHHHHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LV----SDEIIFNL 121 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~----~~~~~~~~ 121 (287)
+...|..|++.|+|||||||++..+...+ +..+|+.|++-.. . +....+........ .. ...+...+
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~-~----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF-H----PDYDELLKADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG-S----TTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh-c----cchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44688899999999999999999999987 7788999765322 1 11111111100000 00 01122333
Q ss_pred HHHHHHhcccCCCccEEEeCCCCCHHHHH-HHHHh---cCccEEEEEecCHHHHHHHHhCCC
Q 023080 122 LSKRLEAGQAGGESGFILDGFPRTVKQAE-ILEEV---MDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 122 l~~~l~~~~~~~~~g~Ildg~p~~~~~~~-~l~~~---~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+...+.. ...+|+|+...+..... .++.+ +.--.++++.++++..+.|+..|.
T Consensus 86 ~~~a~~~-----~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 86 IEYAIEN-----RYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHHC-----T--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHc-----CCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 3333443 46899999777666555 33332 323356788999999999998885
No 141
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.75 E-value=3e-08 Score=81.76 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCc-------------hHHHHHHHHhcCCcccHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGS-------------LSQQLSEIVNQGKLVSDEIIF 119 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~-------------~~~~i~~~l~~g~~~~~~~~~ 119 (287)
.+|+|.|+|-|||||+++.|.+.+.-+ ++++|.+.......... .+.... .+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~ 69 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFR------------RLY 69 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHH------------HHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHH------------HHH
Confidence 478999999999999999999999654 78887776642221100 011111 111
Q ss_pred HHHHHHHHhcccCCCccEEEeCCCCCHHH-HHHHHH-h-cCccEEEEEecCHHHHHHHHhCCC
Q 023080 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQ-AEILEE-V-MDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~-~~~l~~-~-~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+...+...... +..+|+|+...+..+ .+.+.+ + +.+-++|-+.||.+++.+|-..|.
T Consensus 70 ~~~~~~iaa~a~a-G~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 70 AAMHAAIAAMARA-GNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 1222222221111 578999987666554 445534 3 235577899999999999998875
No 142
>PRK07429 phosphoribulokinase; Provisional
Probab=98.74 E-value=3.1e-08 Score=89.74 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=33.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLV 89 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~ll 89 (287)
..++++|.|.|++||||||+++.|+..++ ..+++.|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35788999999999999999999999987 5677887764
No 143
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.72 E-value=1.3e-07 Score=93.34 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=65.0
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IF 119 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~ 119 (287)
....+|.+|+++|.|||||||+|+.|++++ ++.+++. |.+|..+..+ ..+.++. +.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~--------------~~~~~~~r~~~~~ 519 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRD--------------LGFSDADRVENIR 519 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCC--------------CCCCHHHHHHHHH
Confidence 344468899999999999999999999997 3466777 4455533321 1111111 11
Q ss_pred HHH--HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080 120 NLL--SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 120 ~~l--~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl 175 (287)
.+. ...+... +..+|+|.......+.+.+..... +-.+|||+++.+++.+|.
T Consensus 520 ~l~~~a~~~~~~----G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 520 RVAEVARLMADA----GLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHHHHhC----CCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 111 1111111 356777764333344444444332 347899999999999993
No 144
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.71 E-value=1.6e-07 Score=85.35 Aligned_cols=34 Identities=35% Similarity=0.455 Sum_probs=29.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC------CeeehhHHHH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGV------PHIATGDLVR 90 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~------~~i~~d~llr 90 (287)
++|+|+|||||||+++.|+..+.. .+++.||++.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 689999999999999999988753 4899999884
No 145
>COG4639 Predicted kinase [General function prediction only]
Probab=98.69 E-value=2.4e-07 Score=73.74 Aligned_cols=111 Identities=21% Similarity=0.157 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
..++++|+|||||||+++... .+..+++++++=+.. |....+.... -.++.+.+.+...+.+.... +
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l-------g~~~~~e~sq---k~~~~~~~~l~~~l~qrl~~-G 69 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL-------GVSASKENSQ---KNDELVWDILYKQLEQRLRR-G 69 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh-------hhchhhhhcc---ccHHHHHHHHHHHHHHHHHc-C
Confidence 468899999999999998643 467889987764431 1111111111 12334444444444443333 5
Q ss_pred ccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.-.|+|..-...++...+... +-...+|+++.|.+.+.+|-+.|
T Consensus 70 k~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 70 KFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred CeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 788999887666666555443 23567799999999999997643
No 146
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.68 E-value=9.9e-08 Score=82.46 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++.+|.|.|++||||||+++.|+..+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4788999999999999999999998874
No 147
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.68 E-value=1.5e-07 Score=80.81 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLV 89 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~ll 89 (287)
+|.|.|++||||||+++.|+..+. +.++++|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999883 3467777764
No 148
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.64 E-value=5e-07 Score=73.53 Aligned_cols=111 Identities=20% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCe-eehhHHHHHHHHcCCchHH-HHHHHHhcCCcccHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPH-IATGDLVREELASSGSLSQ-QLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~-i~~d~llr~~~~~~~~~~~-~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
+.++..|.|+|.+||||||+|..|.++| |... +--+|-+|..+..+-.+.. .-.+.+. -...+.+.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniR---------RvaevAkl 90 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIR---------RVAEVAKL 90 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHH---------HHHHHHHH
Confidence 4477889999999999999999999988 4432 2334667765543221111 1111111 11122333
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHH--hcCcc-EEEEEecCHHHHHHHH
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEE--VMDID-LVVNLKLCEDVLLEKC 175 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~--~~~~d-~vi~L~~~~e~l~~Rl 175 (287)
+... ..++|..|-........+.+ ++.-. +-||+++|.+++.+|=
T Consensus 91 l~da-----G~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD 138 (197)
T COG0529 91 LADA-----GLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD 138 (197)
T ss_pred HHHC-----CeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC
Confidence 3332 35667776555443333322 23223 4599999999998774
No 149
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.64 E-value=2.9e-08 Score=83.51 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+|.|.|++||||||+|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999996
No 150
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.62 E-value=1e-07 Score=66.47 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.|+|+|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999985
No 151
>PRK05439 pantothenate kinase; Provisional
Probab=98.61 E-value=1.6e-07 Score=84.23 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=34.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVR 90 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr 90 (287)
....|.+|.|.|+|||||||+|+.|++.++ +.++++|+++.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 445788999999999999999999998663 45788888764
No 152
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.57 E-value=1.3e-06 Score=74.79 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCC---------chHHHHHHHHhcCCcccHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSG---------SLSQQLSEIVNQGKLVSDEI 117 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~---------~~~~~i~~~l~~g~~~~~~~ 117 (287)
..+++|++.|.|+.|||++|+.|+..| | ..+++++++-|....... ..+..+++.+. ..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a------~~- 82 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA------KE- 82 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH------HH-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH------HH-
Confidence 467889999999999999999999876 3 357899988877654311 11222222211 11
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEe--cCHHHHHH-HHhCCCcc-ccCCCccccc
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLK--LCEDVLLE-KCLGRRMC-SQCGGNFNVA 191 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~--~~~e~l~~-Rl~~R~~~-~~~g~~y~~~ 191 (287)
..+-+...+... +++--|+|+.-.|.+..+.+..... .--++||+ |+++.+++ .+...... | .|.-
T Consensus 83 ~l~dl~~~l~~~---~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~sp----DY~~- 154 (222)
T PF01591_consen 83 ALEDLIEWLQEE---GGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSP----DYKG- 154 (222)
T ss_dssp HHHHHHHHHHTS-----SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSG----GGTT-
T ss_pred HHHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCc----cccc-
Confidence 122222333322 1467899999889888777655321 12455555 45555544 44332211 1 1110
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-CcEEEEeCC
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-GKLLEFDLP 260 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-~~~~~id~~ 260 (287)
...++..+.+.+|++.|+..++|+.+-.+.. ..+..+|..
T Consensus 155 -----------------------------~~~e~A~~Df~~RI~~Ye~~YEpl~~e~d~~lsyIKiin~g 195 (222)
T PF01591_consen 155 -----------------------------MDPEEAIEDFKKRIEHYEKVYEPLDEEEDEDLSYIKIINVG 195 (222)
T ss_dssp -----------------------------S-HHHHHHHHHHHHHHHHTT-----TTTTTTSEEEEEETTT
T ss_pred -----------------------------CCHHHHHHHHHHHHHhhcccccccccccccCceEEEEEcCC
Confidence 1112345677899999999999987222222 234456643
No 153
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.55 E-value=2.3e-06 Score=68.59 Aligned_cols=166 Identities=21% Similarity=0.224 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCc-----hHHHHHHHHhcCCcc-cHHH------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGS-----LSQQLSEIVNQGKLV-SDEI------ 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~-----~~~~i~~~l~~g~~~-~~~~------ 117 (287)
...+|+++||+|+||.|+.......+... ++----+.|..-. +++ ....+...-.+|.+. +.+.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~a-g~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADA-GGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCC-CcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence 46789999999999999999998887321 1111011111111 111 112222222233221 1100
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG 197 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 197 (287)
+-..+...+.. +..+|..|.-.-+-++.. ...--++|.|.++++++.+|+..|+
T Consensus 83 ip~eId~wl~~-----G~vvl~NgSRa~Lp~arr---ry~~Llvv~ita~p~VLaqRL~~RG------------------ 136 (192)
T COG3709 83 IPAEIDLWLAA-----GDVVLVNGSRAVLPQARR---RYPQLLVVCITASPEVLAQRLAERG------------------ 136 (192)
T ss_pred CchhHHHHHhC-----CCEEEEeccHhhhHHHHH---hhhcceeEEEecCHHHHHHHHHHhc------------------
Confidence 11223333443 244556554222222221 1112268999999999999999875
Q ss_pred CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
.++.+.|..||..-.... ...+.++.||+++.++..-++++..|.++
T Consensus 137 --------------------------REs~eeI~aRL~R~a~~~-------~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 137 --------------------------RESREEILARLARAARYT-------AGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred --------------------------cCCHHHHHHHHHhhcccc-------cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 456788888877643321 22567899999999999999999888754
Q ss_pred h
Q 023080 278 E 278 (287)
Q Consensus 278 ~ 278 (287)
.
T Consensus 184 ~ 184 (192)
T COG3709 184 S 184 (192)
T ss_pred c
Confidence 3
No 154
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.54 E-value=1.5e-06 Score=76.89 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHHHHHcCC----chHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVREELASSG----SLSQQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~~~~~~~----~~~~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
+.|+|+|.|||||||+|+.|++.+ .+.+++.+++ . +.... ...+.++ ..+...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~-~--~~~~~y~~~~~Ek~~R-----------~~l~s~v~r~ 67 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL-G--IDRNDYADSKKEKEAR-----------GSLKSAVERA 67 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH-H---TTSSS--GGGHHHHH-----------HHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc-c--cchhhhhchhhhHHHH-----------HHHHHHHHHh
Confidence 478999999999999999999975 2344554333 2 11111 0011111 1122233333
Q ss_pred HHhcccCCCccEEEeCCCCCHHHH---HHHHH-hcCccEEEEEecCHHHHHHHHhCCC
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQA---EILEE-VMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~---~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+.. ..-+|+|+..--.... -.+.+ ......+||++++.+.+++|=..|.
T Consensus 68 ls~-----~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~ 120 (270)
T PF08433_consen 68 LSK-----DTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP 120 (270)
T ss_dssp HTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT
T ss_pred hcc-----CeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC
Confidence 332 3678999732222222 22222 2336688999999999999998874
No 155
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.53 E-value=2.1e-07 Score=77.38 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVRE 91 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~ 91 (287)
+|.|.|++||||||+|+.|++.+ ++.+++.|++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 47899999999999999999996 4578999999874
No 156
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.53 E-value=1.4e-07 Score=83.55 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLV 89 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~ll 89 (287)
+|.|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999887 45678887664
No 157
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.50 E-value=5.1e-06 Score=73.06 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|+|.+||||||..+.|.+ +|+..++- +|..++..++............-
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN---------------------------lP~~Ll~~l~~~~~~~~~~~~~~ 54 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALED-LGYYCVDN---------------------------LPPSLLPQLIELLAQSNSKIEKV 54 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHh-cCeeEEcC---------------------------CcHHHHHHHHHHHHhcCCCCceE
Confidence 688999999999999998854 78776653 23333333333222111111123
Q ss_pred cEEEeCC----CCCHHH-HHHHHHhcCccEEEEEecCHHHHHHHHh-CCCcccc
Q 023080 136 GFILDGF----PRTVKQ-AEILEEVMDIDLVVNLKLCEDVLLEKCL-GRRMCSQ 183 (287)
Q Consensus 136 g~Ildg~----p~~~~~-~~~l~~~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~~ 183 (287)
.+++|-- .....+ ...+...+..--+|||+++++++++|.. .||.||.
T Consensus 55 Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL 108 (284)
T PF03668_consen 55 AIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPL 108 (284)
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCC
Confidence 5677732 111111 1122222223358999999999999997 4666763
No 158
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.50 E-value=3.6e-07 Score=81.38 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDLVR 90 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~llr 90 (287)
...|.+|.|.|++||||||+++.|+..+. +.++++|.+..
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 45788999999999999999998877663 34567766553
No 159
>PHA00729 NTP-binding motif containing protein
Probab=98.44 E-value=1.8e-06 Score=73.78 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
..|+|+|+||+||||+|..|+++++.. .+..++.... . ......++.+.+...+....... ..
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d---~-----------~~~~~fid~~~Ll~~L~~a~~~~-~~ 82 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQ---Y-----------VQNSYFFELPDALEKIQDAIDND-YR 82 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHh---c-----------CCcEEEEEHHHHHHHHHHHHhcC-CC
Confidence 479999999999999999999987522 2222111110 0 00111222333334343333221 11
Q ss_pred CCccEEEeCCCCCHH---HH-H------HHHHhc--CccEEEEEecCHHHHHHHHhCCCc
Q 023080 133 GESGFILDGFPRTVK---QA-E------ILEEVM--DIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~---~~-~------~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
..-+|+|++..... +. + .+.... .+++++++.++++.+.+++..|+.
T Consensus 83 -~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 83 -IPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred -CCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 12368997321111 11 0 111111 378899999999999999999863
No 160
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=7.9e-06 Score=70.14 Aligned_cols=47 Identities=32% Similarity=0.472 Sum_probs=40.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS 95 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~ 95 (287)
..+.+|.+|+|-|+||.||||+|..||.++|..++-..|.+|+.+..
T Consensus 84 r~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ 130 (299)
T COG2074 84 RKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK 130 (299)
T ss_pred hccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence 44568999999999999999999999999999876666888887754
No 161
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.43 E-value=1.4e-06 Score=83.77 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDL 88 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~l 88 (287)
.++.+|.|.|++||||||+++.|+..+ +..+|++|+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 356889999999999999999999987 4457888775
No 162
>PLN02165 adenylate isopentenyltransferase
Probab=98.41 E-value=3.1e-06 Score=76.38 Aligned_cols=37 Identities=19% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
.++.+|+|+||+||||||++..||+.++..+++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 3455899999999999999999999999999999876
No 163
>PRK15453 phosphoribulokinase; Provisional
Probab=98.33 E-value=5.7e-06 Score=72.92 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR 90 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr 90 (287)
.++++|.|+|.|||||||+++.|++.++ ..+++.|++.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4678999999999999999999998774 45677776654
No 164
>PRK09169 hypothetical protein; Validated
Probab=98.17 E-value=3e-05 Score=83.15 Aligned_cols=107 Identities=11% Similarity=-0.051 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
..|+|+|++|+||||+++.|+..+++.++++|..+.+ ..++.|.+++.... +..+.....+.+.+. .
T Consensus 2111 ~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr-~----- 2177 (2316)
T PRK09169 2111 QARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR-W----- 2177 (2316)
T ss_pred cccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc-C-----
Confidence 4689999999999999999999999999999998877 46677888776544 666777777766553 1
Q ss_pred ccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 135 SGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 135 ~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+||. | .+........|...+ ++||+..+.+++.+|+.+.
T Consensus 2178 -~vVLSTGGGav~~~enr~~L~~~G---lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2178 -EVVLPAEGFGAAVEQARQALGAKG---LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred -CeEEeCCCCcccCHHHHHHHHHCC---EEEEEECCHHHHHHHhccC
Confidence 33443 2 344444455555544 7999999999999999654
No 165
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.10 E-value=3.3e-05 Score=64.23 Aligned_cols=121 Identities=18% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHH----cCC-------------chHHHHHHHHhcCCccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELA----SSG-------------SLSQQLSEIVNQGKLVS 114 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~----~~~-------------~~~~~i~~~l~~g~~~~ 114 (287)
+..+|.|.|...|||||||+.|.+.| |+.+|+=||+....-. .+. .....+.-.+.+..-.+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 34678899999999999999999988 7788888887754221 010 01112222333222121
Q ss_pred H--HHHHH-----HHHHHHHhcccCCCccEEEeCCCCC--HHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCc
Q 023080 115 D--EIIFN-----LLSKRLEAGQAGGESGFILDGFPRT--VKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 115 ~--~~~~~-----~l~~~l~~~~~~~~~g~Ildg~p~~--~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
+ +.+.. -.....+..... ..-+|+|||-.. ..+.. ..|..|++..+-+++.+|-..|..
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~-~~iviidGfmiy~y~p~~~------~~d~~im~~~~y~~~krRr~~Rt~ 150 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYK-NHIVIIDGFMIYNYKPQVD------LFDRIIMLTLDYETCKRRREARTY 150 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCccccc-CcEEEEecceEEecchhhh------hhhhheeeeccHHHHHHhhccccc
Confidence 1 11111 011111111122 356899997432 12211 256789999999999999888753
No 166
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.09 E-value=0.00011 Score=59.07 Aligned_cols=111 Identities=12% Similarity=0.193 Sum_probs=62.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
|...++-||.||||||+...+-..+ ++.+++.|.+..+ +.+..+....++.. ......+...+..
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~-i~p~~p~~~~i~A~---------r~ai~~i~~~I~~--- 68 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQ-ISPDNPTSAAIQAA---------RVAIDRIARLIDL--- 68 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhh-cCCCCchHHHHHHH---------HHHHHHHHHHHHc---
Confidence 4567889999999999877665444 5678899776554 33222322222221 1122223333333
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCcc---EEEEEec-CHHHHHHHHhCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDID---LVVNLKL-CEDVLLEKCLGRR 179 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d---~vi~L~~-~~e~l~~Rl~~R~ 179 (287)
+.+|..+.........+.++...... ...|+-+ +.|..++|++.|-
T Consensus 69 --~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RV 118 (187)
T COG4185 69 --GRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRV 118 (187)
T ss_pred --CCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence 46777776555555555554432212 2223333 5678999998874
No 167
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.08 E-value=0.00022 Score=61.64 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=58.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGES 135 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~~ 135 (287)
+|+|+|.+||||||-.+.|.+ +|+..++- +|.+++-.++.-..........-
T Consensus 3 lvIVTGlSGAGKsvAl~~lED-lGyycvDN---------------------------LPp~Llp~~~~~~~~~~~~~~kv 54 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVLED-LGYYCVDN---------------------------LPPQLLPKLADLMLTLESRITKV 54 (286)
T ss_pred EEEEecCCCCcHHHHHHHHHh-cCeeeecC---------------------------CCHHHHHHHHHHHhhcccCCceE
Confidence 588999999999999998854 67666542 23333333333222111111134
Q ss_pred cEEEeC----CCCCHHHH-HHHHHhcCcc-EEEEEecCHHHHHHHHh-CCCcccc
Q 023080 136 GFILDG----FPRTVKQA-EILEEVMDID-LVVNLKLCEDVLLEKCL-GRRMCSQ 183 (287)
Q Consensus 136 g~Ildg----~p~~~~~~-~~l~~~~~~d-~vi~L~~~~e~l~~Rl~-~R~~~~~ 183 (287)
.+++|- |+....+. ..+......+ -++||+++.+++++|.. .||.||.
T Consensus 55 Av~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL 109 (286)
T COG1660 55 AVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPL 109 (286)
T ss_pred EEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCC
Confidence 677883 22222221 2233221122 48899999999999997 4667763
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.08 E-value=3.2e-06 Score=65.72 Aligned_cols=29 Identities=41% Similarity=0.734 Sum_probs=25.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
|+|.||||+||||+++.+++.++.+++.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i 29 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEI 29 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccc
Confidence 68999999999999999999999876544
No 169
>PHA03136 thymidine kinase; Provisional
Probab=98.05 E-value=0.00016 Score=66.18 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+-.+|.|.|+.|+||||+++.|.+.
T Consensus 35 ~~~rvyieG~~gvGKTT~~~~l~~~ 59 (378)
T PHA03136 35 RLVLLYLDGPFGTGKTTTAKLLMEM 59 (378)
T ss_pred eeEEEEEECCCcCCHHHHHHHHHhc
Confidence 5578999999999999999999873
No 170
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-05 Score=74.61 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh--HHHHHHHHcCCchHHHHHHHHhcCCcc-----------------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG--DLVREELASSGSLSQQLSEIVNQGKLV----------------- 113 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d--~llr~~~~~~~~~~~~i~~~l~~g~~~----------------- 113 (287)
+|.=|+|.||||||||.+|+.||.++|++++++. +++.. -.++..+.+++.|.+-...
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG---vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkR 298 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG---VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKR 298 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc---cCcccHHHHHHHHHHHhccCCeEEEeecccccccch
Confidence 3445889999999999999999999999998762 22211 1234556666666543211
Q ss_pred ---cHHHHHHHHHHHHHh---cccC--CCccEEEeCC---CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 114 ---SDEIIFNLLSKRLEA---GQAG--GESGFILDGF---PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 114 ---~~~~~~~~l~~~l~~---~~~~--~~~g~Ildg~---p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
..++..+++.+.+.. .... .+.++++=|. |..++ -.|.+.+.+|.=|.|.+|.++..+++.+
T Consensus 299 e~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD--paLRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 299 EEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD--PALRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred hhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC--HHHhccccccceeeecCCchHHHHHHHH
Confidence 112222333222221 1111 1356666553 33333 3466778899999999999998887754
No 171
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.97 E-value=5.5e-05 Score=62.81 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-------HHHHH--HH---HhcC-------CcccHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-------SQQLS--EI---VNQG-------KLVSDE 116 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-------~~~i~--~~---l~~g-------~~~~~~ 116 (287)
+|.|.|..|||++|+|+.||++||+++++- +++.......+-. .+... .. +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999998 7776643321110 01100 11 1111 111222
Q ss_pred HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+.....+.+..... ..++|+.|.-.. -.+.. .+..+-|+|.+|.+..++|++++
T Consensus 80 ~~~~~~~~~i~~la~--~~~~Vi~GR~a~----~il~~-~~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAA--KGNCVIVGRCAN----YILRD-IPNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH-----EEEESTTHH----HHTTT--TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCCEEEEecCHh----hhhCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence 333333333333211 146777663211 01111 11236799999999999999987
No 172
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=97.93 E-value=5.5e-05 Score=75.27 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
....|++.|.||+||||+++.|++.+++..+++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~ 246 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQS 246 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCc
Confidence 456889999999999999999999986554443
No 173
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.91 E-value=1.2e-05 Score=66.19 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDL 88 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~l 88 (287)
+.|+|+|+|||||||+|..|+..++ +.++.+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 4789999999999999999999987 445655443
No 174
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.89 E-value=4.1e-05 Score=60.73 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg 79 (287)
|+|+||+||||||+++.|++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999999864
No 175
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.89 E-value=1.4e-05 Score=69.65 Aligned_cols=30 Identities=30% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.....|.+|.|.|++|+||||+|+.|+..+
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 345688999999999999999999998876
No 176
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.88 E-value=1.4e-05 Score=71.83 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
.+..|+|+||+||||||+|..|++.++..+|+.|..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 346899999999999999999999999999988773
No 177
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.00019 Score=57.04 Aligned_cols=44 Identities=39% Similarity=0.493 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C-CCeeehhHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G-VPHIATGDLVREELA 94 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g-~~~i~~d~llr~~~~ 94 (287)
..+++.|.|+|.+||||||+|-.|.+.+ | ..++--+|-+|..++
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN 75 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN 75 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc
Confidence 4578899999999999999999999877 2 334444455555443
No 178
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00016 Score=67.29 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcc-cHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL----G--VPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLV-SDEIIFNLLSK 124 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~-~~~~~~~~l~~ 124 (287)
++.+|+|+||+||||||++..||..+ | +.+++. |..|.... ..+..+.+. |..+ .... ...+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~-Dt~R~aA~------eQLk~yAe~lgvp~~~~~~-~~~l~~ 293 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT-DNYRIAAI------EQLKRYADTMGMPFYPVKD-IKKFKE 293 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc-cchhhhHH------HHHHHHHHhcCCCeeehHH-HHHHHH
Confidence 46788999999999999999999765 2 223444 55554211 123333222 1111 1111 223333
Q ss_pred HHHhcccCCCccEEEe--CCC-CCHHHHHHHHHh
Q 023080 125 RLEAGQAGGESGFILD--GFP-RTVKQAEILEEV 155 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ild--g~p-~~~~~~~~l~~~ 155 (287)
.+.... ...+++| |++ ++..+.+.|..+
T Consensus 294 ~l~~~~---~D~VLIDTaGr~~rd~~~l~eL~~~ 324 (432)
T PRK12724 294 TLARDG---SELILIDTAGYSHRNLEQLERMQSF 324 (432)
T ss_pred HHHhCC---CCEEEEeCCCCCccCHHHHHHHHHH
Confidence 343221 3579999 664 667777776653
No 179
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.86 E-value=9.3e-05 Score=65.16 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+....++|.||||+||||+|+.+++.+
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455678999999999999999999875
No 180
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0001 Score=71.13 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..+|.-|++.|||||||||+|+.||..-++.++++
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence 35677799999999999999999999988888776
No 181
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.81 E-value=1.4e-05 Score=65.14 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=26.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELAS 95 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~ 95 (287)
+|+|+|++||||||+++.|++. |++++ .+..+..+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 4899999999999999999998 88877 4666665543
No 182
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.79 E-value=0.00024 Score=67.97 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.|.-|+|.||||||||++|+.+|..++.+++.+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 455689999999999999999999999987765
No 183
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.77 E-value=0.00031 Score=65.61 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
...+|+|+|++||||||+++.|++.||...+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4468999999999999999999999998754
No 184
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.74 E-value=0.0002 Score=62.74 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR 90 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr 90 (287)
+|.|+|++||||||+++.|++.++ ..+|+.|++.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478999999999999999998874 45788777665
No 185
>PLN02840 tRNA dimethylallyltransferase
Probab=97.74 E-value=3.9e-05 Score=71.41 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
++++|+|.||+||||||++..|+++++..+|+.|.
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 55689999999999999999999999988887765
No 186
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.73 E-value=0.0013 Score=56.65 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..|++|+|.|..||||+.+.+.|.+.++-.++.+
T Consensus 29 ~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v 62 (230)
T TIGR03707 29 GARVVIVFEGRDAAGKGGTIKRITEHLNPRGARV 62 (230)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEE
Confidence 3689999999999999999999999996555444
No 187
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=3.8e-05 Score=61.81 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
.++.|+|+|+||+||||++..+++.+.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 56899999999999999999999888433
No 188
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.71 E-value=3.5e-05 Score=71.57 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
.|..|+|+||||+||||+|+.||+.++.+++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 45789999999999999999999999999888763
No 189
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0001 Score=65.68 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
..|++.||||+|||++|+.||+++-+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSI 203 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSI 203 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhee
Confidence 46889999999999999999999854
No 190
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.70 E-value=4.2e-05 Score=65.22 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
...++|.||||+||||+|+.+|+.++..+..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~ 80 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKI 80 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEe
Confidence 4568999999999999999999999887643
No 191
>CHL00181 cbbX CbbX; Provisional
Probab=97.69 E-value=0.00018 Score=64.32 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.++..++|.||||+||||+|+.+++.+
T Consensus 56 ~~~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 56 SNPGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456779999999999999999999875
No 192
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.69 E-value=0.00018 Score=60.64 Aligned_cols=120 Identities=19% Similarity=0.244 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH-HH--cCCchHH---------HHHHHHhcCCcccHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE-LA--SSGSLSQ---------QLSEIVNQGKLVSDEIIFNLL 122 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~-~~--~~~~~~~---------~i~~~l~~g~~~~~~~~~~~l 122 (287)
.+++|.||+|+|||.+|-.||+++|.++|+.|.+.--. +. .+.+... .....+..|. ++.+.....+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L 80 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL 80 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence 36789999999999999999999999999987654221 00 0000000 1123345555 4444466666
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC----ccEEEEEecCHH-HHHHHHhCC
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD----IDLVVNLKLCED-VLLEKCLGR 178 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~----~d~vi~L~~~~e-~l~~Rl~~R 178 (287)
...+..... +.++|++|--.++-..- .....+ ...+..+.++.+ .-+.|..+|
T Consensus 81 i~~v~~~~~--~~~~IlEGGSISLl~~m-~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 81 ISEVNSYSA--HGGLILEGGSISLLNCM-AQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHTTTT--SSEEEEEE--HHHHHHH-HH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHhccc--cCceEEeCchHHHHHHH-HhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 666666544 47999998543333222 122222 235667777664 455555544
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=3.9e-05 Score=59.33 Aligned_cols=28 Identities=39% Similarity=0.591 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+..++|.|||||||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3578999999999999999999988554
No 194
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00015 Score=61.74 Aligned_cols=176 Identities=19% Similarity=0.188 Sum_probs=88.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CCc----hHHHHHHHHhcCCcccHHHHHHHH----
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SGS----LSQQLSEIVNQGKLVSDEIIFNLL---- 122 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~~----~~~~i~~~l~~g~~~~~~~~~~~l---- 122 (287)
.-|+|.||.|+||+|+.++|.+.++. ..+++....+..... +.. ....+..+..++.++.........
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGts 117 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTS 117 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCch
Confidence 34889999999999999999999974 445544444331100 000 112233333333332221111000
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEE-EEEe-cCHHHHHHHHhCCCccccCCCccccccccccCCCC
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLV-VNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNG 200 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~v-i~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~ 200 (287)
....+..... ++..++|-.-+..... ....+|.+ +|+. .+...+.+|+..|.
T Consensus 118 i~av~~~~~~-gk~~ildId~qg~~~i----~~~~~~~i~i~~~pps~~~~e~rl~~rg--------------------- 171 (231)
T KOG0707|consen 118 IAAVQRLMLS-GKVCILDIDLQGVQPI----RATSLDAIYIFIKPPSIKILEERLRARG--------------------- 171 (231)
T ss_pred HHHHHHHHhc-CCcceeehhhcCceee----ecCCCceEEEEecCCcchhHHHHhhccC---------------------
Confidence 0111111111 3455555322211111 01124433 3443 45567777777663
Q ss_pred CCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccchhh
Q 023080 201 NPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDEYE 280 (287)
Q Consensus 201 ~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~~~ 280 (287)
.++++.+.+|+..-+......++-+. ..+. +.+....++...++...+..++.+
T Consensus 172 -----------------------te~~~~l~~r~~sa~~e~~~~~~~g~--~d~~-~~ns~~lee~~kel~~~~~~~~~~ 225 (231)
T KOG0707|consen 172 -----------------------TETEESLLKRLKSAEEEFEILENSGS--FDLV-IVNSDRLEEAYKELEIFISSDDKE 225 (231)
T ss_pred -----------------------cchHHHHHHHHHhhhhhhccccCCcc--ccce-ecCCCchhhhhhhhhhhhhHHHHh
Confidence 56778888888855444443333111 1122 333368899999998888776654
Q ss_pred hh
Q 023080 281 EK 282 (287)
Q Consensus 281 ~~ 282 (287)
..
T Consensus 226 ~~ 227 (231)
T KOG0707|consen 226 SH 227 (231)
T ss_pred hh
Confidence 43
No 195
>PRK06761 hypothetical protein; Provisional
Probab=97.64 E-value=4.7e-05 Score=67.52 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
+++|+|+|+|||||||+++.|+++++...+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~ 32 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGI 32 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCce
Confidence 357999999999999999999999875433
No 196
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.63 E-value=7.5e-05 Score=63.65 Aligned_cols=39 Identities=23% Similarity=0.125 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELA 94 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~ 94 (287)
|+|+|+|.|||||||+++.+.+. |.++ +++.+.++..+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 57999999999999999999765 6666 999999988664
No 197
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.62 E-value=5.2e-05 Score=70.48 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
.|..|+|+||||+||||+|+.|++.++.+++.+|.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 35789999999999999999999999998887754
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.62 E-value=5.9e-05 Score=59.60 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=25.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
|+|.|+||+|||++++.|++.++.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i 30 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRI 30 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEE
Confidence 78999999999999999999998776543
No 199
>PLN02748 tRNA dimethylallyltransferase
Probab=97.61 E-value=6.1e-05 Score=71.28 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=33.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
....+.+|+|+||+||||||++..||++++..+|+.|.
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 33466689999999999999999999999999999874
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.60 E-value=0.0002 Score=55.65 Aligned_cols=84 Identities=20% Similarity=0.227 Sum_probs=43.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh--------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc--ccHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL--------GVPHIATGDLVREELASSGSLSQQLSEIVNQGKL--VSDEIIFNLL 122 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l--------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~--~~~~~~~~~l 122 (287)
....++|.|++|+|||++++.+++.+ +..++.+. .-.. .....+...+...+..... .+.......+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSS--RTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHH--SSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCC--CCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 34568899999999999999999987 44333221 1111 0011223334444433222 1334444666
Q ss_pred HHHHHhcccCCCccEEEeCC
Q 023080 123 SKRLEAGQAGGESGFILDGF 142 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~ 142 (287)
.+.+..... ..+|||.+
T Consensus 80 ~~~l~~~~~---~~lviDe~ 96 (131)
T PF13401_consen 80 IDALDRRRV---VLLVIDEA 96 (131)
T ss_dssp HHHHHHCTE---EEEEEETT
T ss_pred HHHHHhcCC---eEEEEeCh
Confidence 666666522 26788874
No 201
>PF13173 AAA_14: AAA domain
Probab=97.58 E-value=0.00061 Score=53.19 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=56.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
..++|.||.|+||||+++.+++.+. +.+++.++.-..... . + + ....+.+.....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-------------~-----~-~-~~~~~~~~~~~~- 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-------------D-----P-D-LLEYFLELIKPG- 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-------------h-----h-h-hHHHHHHhhccC-
Confidence 4688999999999999999998875 667777555332110 0 0 0 112222221111
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHH
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEK 174 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~R 174 (287)
...++||-+-....+...+.... .++.-|++..+....+.+
T Consensus 62 ---~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 62 ---KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred ---CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 35688997644444444444332 256778888777666543
No 202
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.58 E-value=6e-05 Score=67.07 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
.|+|+||+|||||+++..|++.++..+|+.|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 378999999999999999999999999998773
No 203
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00035 Score=63.11 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSG 97 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~ 97 (287)
.+|.=|++.||||+|||-+|+..|.+.+..+|.+ ++++++.+-.+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccch
Confidence 3566689999999999999999999999887654 566666554433
No 204
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.56 E-value=0.0029 Score=55.59 Aligned_cols=34 Identities=12% Similarity=0.075 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..|++|+|.|..||||+.+.+.|.+.++-.++.+
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V 87 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQV 87 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEE
Confidence 4689999999999999999999999986555444
No 205
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.55 E-value=0.00016 Score=66.00 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=32.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLV 89 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~ll 89 (287)
-..|..+.|.||||+|||.+|+.+|+.+|+.+| +..+++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 457788899999999999999999999988755 445554
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.52 E-value=9.9e-05 Score=67.38 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
+...++|.|||||||||+++.|++.++.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4567899999999999999999999865
No 207
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.52 E-value=0.0018 Score=61.75 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
...|++|+|.|..||||+++.++|.+.++-..+.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~ 70 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIE 70 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccE
Confidence 3588999999999999999999999998544433
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=97.50 E-value=0.00043 Score=63.06 Aligned_cols=27 Identities=37% Similarity=0.629 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|+|++|+||||.+..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999888888765
No 209
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.49 E-value=0.00014 Score=57.35 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
.+.+|+|.|+.||||||+++.+++.+|..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999999864
No 210
>PLN02796 D-glycerate 3-kinase
Probab=97.45 E-value=0.00012 Score=66.49 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLV 89 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ll 89 (287)
.+|.+|.|.|++||||||+++.|...+. ...++.|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4778999999999999999999998874 3456776654
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.43 E-value=0.0014 Score=63.02 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..|.-++|.||||||||++++.||...+++++.+
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 3455689999999999999999999998887755
No 212
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.40 E-value=0.00062 Score=60.78 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+...++|.||||+||||+|+.+++.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 44579999999999999998888765
No 213
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.37 E-value=0.00017 Score=65.16 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
..|+|.|+||+||||+++.||+.+|++++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 358999999999999999999999988763
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.37 E-value=0.00024 Score=55.43 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL---GVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~ 85 (287)
...++|.|+||+||||+++.++..+ +..++..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 53 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYL 53 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEE
Confidence 3468899999999999999999987 5555443
No 215
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0016 Score=57.69 Aligned_cols=122 Identities=18% Similarity=0.221 Sum_probs=67.1
Q ss_pred CCCe-EEEEEcCCCCCHHHHHHHHHHHhCCCe--eehhHHHHHHHHcCCchHHHHHHHHhcCCc----------------
Q 023080 52 DRNV-QWVFLGCPGVGKGTYASRLSKFLGVPH--IATGDLVREELASSGSLSQQLSEIVNQGKL---------------- 112 (287)
Q Consensus 52 ~~~~-~Ivi~G~pGSGKTTla~~La~~lg~~~--i~~d~llr~~~~~~~~~~~~i~~~l~~g~~---------------- 112 (287)
.+|. -|++.||||+|||.+|+..|..-+-.+ ++.+|++.+.+.....+-+.+-++-.+.++
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~ 242 (439)
T KOG0739|consen 163 RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRS 242 (439)
T ss_pred CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCC
Confidence 3443 488999999999999999999887655 566788887665443333333333222221
Q ss_pred -ccHHHHHHHHHHHHHhc--ccCCCccEEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhC
Q 023080 113 -VSDEIIFNLLSKRLEAG--QAGGESGFILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 113 -~~~~~~~~~l~~~l~~~--~~~~~~g~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
-..+...++--+.+.+- .-..+.|+++=| .|+.++++-.- .++--||+.+|......++-+
T Consensus 243 enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR----RFekRIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 243 ENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR----RFEKRIYIPLPEAHARARMFK 309 (439)
T ss_pred CCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH----HhhcceeccCCcHHHhhhhhe
Confidence 00111111111111111 111134655544 56766654221 134567888888877777654
No 216
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.36 E-value=0.0002 Score=66.81 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|..|+|.||||+|||++|+.++..++..++.+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 3556799999999999999999999998776543
No 217
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.36 E-value=0.0047 Score=50.10 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=28.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLG-VPHIATGDL 88 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~l 88 (287)
|+=++.+||||||++..|+.-|| +-|+..|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 44478999999999999999999 999988776
No 218
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.33 E-value=0.001 Score=58.94 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++|+||||.+..||..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456788899999999999999999877
No 219
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.33 E-value=0.0002 Score=66.56 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLV 89 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ll 89 (287)
..+|.+|.|.|+.||||||+++.|...+. ...|+.|++.
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 34789999999999999999999987662 4567777765
No 220
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.32 E-value=0.00064 Score=58.56 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.|++|+|.|..||||+.+.+.|.+.++-.++
T Consensus 30 ~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~ 60 (228)
T PF03976_consen 30 IPVLILFEGWDASGKGGTINRLIEWLDPRGF 60 (228)
T ss_dssp HEEEEEEEESTTSSHHHHHHHHHCCS-GGGE
T ss_pred CcEEEEEeccccCCchHHHHHHHHhCCCCee
Confidence 5589999999999999999999988854333
No 221
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.00016 Score=66.11 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.-.+|.||||+||||+|+.||...+..+..+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~ 79 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEAL 79 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEe
Confidence 3467899999999999999999999887655
No 222
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.00055 Score=59.42 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
-|..|+|.||||+|||.+|+.||...+.+++.+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 566899999999999999999999999888766
No 223
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.018 Score=48.03 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=21.3
Q ss_pred CccEEEEEecCHHHHHHHHhCCC
Q 023080 157 DIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 157 ~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+|.+|||.++++++.+|+..|.
T Consensus 153 ~~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 153 SLDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred ccceEEEeecChHHHHHHHHHHh
Confidence 48999999999999999999885
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.30 E-value=0.002 Score=65.07 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.|.-|+|.||||||||++++.||..++..++.+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 445689999999999999999999998887755
No 225
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0037 Score=57.25 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
-|++.||||+|||-+|+.+|...|..++++
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 478999999999999999999999888765
No 226
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.29 E-value=0.00025 Score=58.29 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 227
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0012 Score=65.41 Aligned_cols=131 Identities=15% Similarity=0.182 Sum_probs=70.7
Q ss_pred cccccccccCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHh---------
Q 023080 40 FQNHNFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVN--------- 108 (287)
Q Consensus 40 ~~~~~~~~~~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~--------- 108 (287)
-||..+..... +.|.=++|+||||+|||-+|+.+|..=|+|++++ .+++.-....+ ...+++++.
T Consensus 331 KNP~~Y~~lGA-KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~---asrvr~lf~~ar~~aP~i 406 (774)
T KOG0731|consen 331 KNPEQYQELGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVG---ASRVRDLFPLARKNAPSI 406 (774)
T ss_pred cCHHHHHHcCC-cCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccc---hHHHHHHHHHhhccCCeE
Confidence 34444443333 3455588999999999999999999999999876 33332211111 111111111
Q ss_pred ------------c-C-----CcccHHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHH-HHHHHhcCccEEEEEecCHH
Q 023080 109 ------------Q-G-----KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQA-EILEEVMDIDLVVNLKLCED 169 (287)
Q Consensus 109 ------------~-g-----~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~-~~l~~~~~~d~vi~L~~~~e 169 (287)
+ | ..-..+...+.+.-.+..... +.++|+.+.....+.. ..+-+.+.+|..|+++.|..
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~--~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET--SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC--CCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence 1 1 111223333333333333332 3567776543332221 23445566899999999886
Q ss_pred HHHHHHh
Q 023080 170 VLLEKCL 176 (287)
Q Consensus 170 ~l~~Rl~ 176 (287)
.-...+.
T Consensus 485 ~~r~~i~ 491 (774)
T KOG0731|consen 485 KGRASIL 491 (774)
T ss_pred hhhHHHH
Confidence 6555553
No 228
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00034 Score=62.60 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLV 89 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ll 89 (287)
.+..|+|+||.+||||-+|-.||+++|..+||+|...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQ 38 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhh
Confidence 3567999999999999999999999999999997754
No 229
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.28 E-value=0.0003 Score=65.96 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG 86 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d 86 (287)
...|+|.|||||||||+|+.|++.++.+++.++
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 356899999999999999999999998887663
No 230
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.00033 Score=49.67 Aligned_cols=25 Identities=40% Similarity=0.683 Sum_probs=18.1
Q ss_pred CeEEEEEcCCCCCHH-HHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKG-TYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKT-Tla~~La~~l 78 (287)
...++|.|||||||| |+++.++..+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345677999999999 5556555544
No 231
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.26 E-value=0.00032 Score=65.52 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|.-|+|.||||||||++++.+|..++..++.+
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 3566789999999999999999999998877654
No 232
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.26 E-value=0.00033 Score=64.75 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+|..++|.||||+|||++++.++..++..++.+
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 456799999999999999999999998877654
No 233
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.26 E-value=0.0011 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|+|++||||||.+..||..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999999999999877
No 234
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.24 E-value=0.00031 Score=61.94 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
.|+|.|+||+|||++|+.|++.+|.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47789999999999999999999887763
No 235
>PRK06620 hypothetical protein; Validated
Probab=97.24 E-value=0.0015 Score=55.89 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
..++|.||+|||||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 357899999999999999999888765554
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.24 E-value=0.003 Score=59.35 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|+|++||||||.+..||..+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999876
No 237
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.23 E-value=0.00034 Score=63.61 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
...|+|+|++||||||+++.|+..+|.+++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4589999999999999999999999988743
No 238
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.23 E-value=0.0022 Score=60.32 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|++.|++||||||.+..||..+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 467889999999999999999888764
No 239
>PRK10867 signal recognition particle protein; Provisional
Probab=97.22 E-value=0.0022 Score=60.41 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----CC--Ceeehh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL----GV--PHIATG 86 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l----g~--~~i~~d 86 (287)
.+|.+|+|+|++||||||.+..||..+ |. .+++.|
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 457889999999999999888888755 33 356663
No 240
>CHL00176 ftsH cell division protein; Validated
Probab=97.22 E-value=0.0047 Score=61.08 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.|.-++|.||||+|||++++.||...+.+++.+
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 455699999999999999999999999887765
No 241
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.19 E-value=0.00038 Score=58.68 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
|.+|+|.||+|+||||.+..||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 6789999999999999999999887
No 242
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0013 Score=61.01 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..|.+|+|.||.|+||||.+..||..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999876
No 243
>PHA03134 thymidine kinase; Provisional
Probab=97.18 E-value=0.025 Score=51.15 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+-++|.|.|+.|.||||.++.|++.
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 35578999999999999999999874
No 244
>PRK12377 putative replication protein; Provisional
Probab=97.15 E-value=0.0056 Score=53.52 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVRE 91 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~ 91 (287)
..++|.|+||+|||+++..++..+ |. .++++.+++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 468899999999999999999887 33 45666666654
No 245
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.14 E-value=0.00044 Score=64.65 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..|+|.||||||||++|+.||+.++.++..+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~ 147 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIA 147 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEe
Confidence 35799999999999999999999999887654
No 246
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.14 E-value=0.00055 Score=56.43 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
...++|+||+|+|||.+++.|++.+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 356889999999999999999999884
No 247
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.14 E-value=0.00052 Score=54.55 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
..+..+++|+|.||+||||+...|+.+ |+..
T Consensus 6 ~nR~~~fIltGgpGaGKTtLL~aLa~~-Gfat 36 (183)
T COG3911 6 FNRHKRFILTGGPGAGKTTLLAALARA-GFAT 36 (183)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHc-Ccee
Confidence 346678899999999999999999886 5443
No 248
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.13 E-value=0.00055 Score=61.47 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
.+..++|.||||+|||++++.++..++...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344588999999999999999999997654
No 249
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.13 E-value=0.0013 Score=56.41 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL------GVPHIATGDLVREELASSGSLSQQLSEIVNQG 110 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g 110 (287)
++-.++|.|+||||||++|..++... ++.++++++-.+..+.....++-.+.++..+|
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g 81 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSG 81 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcC
Confidence 56689999999999999998866332 34466664444333332223333444444443
No 250
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.13 E-value=0.00053 Score=64.67 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+|..++|.||||+|||++++.+|..++..++.+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 556788999999999999999999998776643
No 251
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.11 E-value=0.0007 Score=52.54 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.+.+|+++.+.|++|+|||.++++||+.+
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 346688999999999999999999999984
No 252
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00043 Score=58.52 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La 75 (287)
++-+++|+||+||||||+.+.|-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 55689999999999999999985
No 253
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.11 E-value=0.00062 Score=52.83 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
...+|++.|.-||||||+++.|++.+|..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45689999999999999999999999864
No 254
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.003 Score=63.79 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..|+|.|||||||||+++.|+..++..++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 455689999999999999999999998776644
No 255
>PF05729 NACHT: NACHT domain
Probab=97.10 E-value=0.00049 Score=55.40 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++|.|++|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999887
No 256
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.10 E-value=0.00031 Score=54.70 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++|.|+||.||||+++.||+.+|..+..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 78999999999999999999998876543
No 257
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.09 E-value=0.00042 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
|.|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999864
No 258
>PRK09087 hypothetical protein; Validated
Probab=97.09 E-value=0.00067 Score=58.49 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE 91 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~ 91 (287)
..++|.|++|||||++++.+++..+..+++.+++..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~ 81 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD 81 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence 4578999999999999999999999889888654433
No 259
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.08 E-value=0.0015 Score=56.73 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+++-.++|.|+|||||||+|..++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999877643
No 260
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.08 E-value=0.00055 Score=58.62 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
+..|..++|.|+||+||||+|+.|+. ...+++.|.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 34466799999999999999999963 345666644
No 261
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.07 E-value=0.00064 Score=61.88 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.+..++|.||||+||||+++.+++.++..+.
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3446889999999999999999999987553
No 262
>PHA02244 ATPase-like protein
Probab=97.06 E-value=0.00056 Score=62.70 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
-|+|.||+|||||++++.|+..++.+++.+..+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 478899999999999999999999998877544
No 263
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00094 Score=64.25 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..++|.||||+|||.+|+.+|..++.+++++
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 444799999999999999999999888887766
No 264
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.05 E-value=0.0006 Score=56.40 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=23.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---C--CCeeehh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL---G--VPHIATG 86 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d 86 (287)
++|.|+||+|||+++..++... | +.++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999999887643 3 3456653
No 265
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.05 E-value=0.00069 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++.++.|+|++||||||+.+.|...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 556889999999999999999987774
No 266
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.04 E-value=0.00076 Score=64.99 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
..+++|+||+||||||..+.||+.+|+.+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 347889999999999999999999987655
No 267
>PRK04195 replication factor C large subunit; Provisional
Probab=97.04 E-value=0.00072 Score=64.89 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..++|.||||+||||+++.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 55688999999999999999999999877654
No 268
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.03 E-value=0.00041 Score=60.27 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=19.3
Q ss_pred EEcCCCCCHHHHHHHHHHHhCC
Q 023080 59 FLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 59 i~G~pGSGKTTla~~La~~lg~ 80 (287)
|+||+||||||+++.+.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999998843
No 269
>PRK04328 hypothetical protein; Provisional
Probab=97.02 E-value=0.0017 Score=56.88 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-.++|.|+||||||++|..++..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~ 46 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWN 46 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5668899999999999999987654
No 270
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.02 E-value=0.0009 Score=59.97 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
+.+|+|+||.|||||.+|-.||++ +...||.|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 347999999999999999999999 5588888664
No 271
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.02 E-value=0.00077 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La 75 (287)
+...++|.|++||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34678999999999999999987
No 272
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.01 E-value=0.00074 Score=57.06 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
|..|.|+|++||||||+.++|...+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998875
No 273
>PRK08116 hypothetical protein; Validated
Probab=96.97 E-value=0.0087 Score=52.97 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVRE 91 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~ 91 (287)
.-++|.|++|+|||.++..++..+ + +.++++.+++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 348899999999999999999875 3 345677666654
No 274
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.96 E-value=0.00068 Score=53.93 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+|+|+|+.|||||||++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999999965
No 275
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.96 E-value=0.0029 Score=54.03 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
....+.+.|+||+||||++..+.+.|+..
T Consensus 118 ~~~l~glag~pGtgkst~~a~v~~aWp~~ 146 (323)
T KOG2702|consen 118 NEELTGLAGRPGTGKSTRIAAVDNAWPVN 146 (323)
T ss_pred chheeeeecCCCCcchhHHHHHHhhcchh
Confidence 44578999999999999999999987543
No 276
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.95 E-value=0.0021 Score=55.57 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+.-.++|.|++||||||+|..++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~ 46 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY 46 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999865544
No 277
>PHA03135 thymidine kinase; Provisional
Probab=96.95 E-value=0.04 Score=49.99 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+-++|.|.|+.|+||||+++.|++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999999985
No 278
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.94 E-value=0.001 Score=62.60 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..++|.||||+||||+++.|++.++..++.+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 33688899999999999999999988776654
No 279
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=96.94 E-value=0.017 Score=55.14 Aligned_cols=110 Identities=19% Similarity=0.169 Sum_probs=65.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
...|++|+|.|..+|||....++|.+.++-..+.+-.+ +.+-..+.....+-......+
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~---------------------~~Pt~~E~~~~~lwRf~~~lP 354 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI---------------------AAPTDEEKAQHYLWRFWRHIP 354 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC---------------------CCcCHHHHcCcHHHHHHHhCC
Confidence 55889999999999999999999999986555544111 111112222333333344444
Q ss_pred cCCCccEEEe-------------CCCCCHHHH------HHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 131 AGGESGFILD-------------GFPRTVKQA------EILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 131 ~~~~~g~Ild-------------g~p~~~~~~------~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
.. +.-.|+| |+-...... ..+++. +..-+-|||+++.++..+|+..|.-+|
T Consensus 355 ~~-G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p 428 (493)
T TIGR03708 355 RR-GRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTP 428 (493)
T ss_pred CC-CeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCC
Confidence 33 3445555 232222222 222221 123355899999999999999987665
No 280
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00092 Score=65.36 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=30.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..+++++++.||||.|||++++.+|+.+|-.++.+
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 44678999999999999999999999998766543
No 281
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.93 E-value=0.00097 Score=60.66 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999987776
No 282
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0056 Score=60.02 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=38.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHhc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVNQ 109 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~~ 109 (287)
-+.-|++.||||||||-++..++...++.+|++ .+++.+.+. ...+.+++.|.+
T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG---aSEq~vR~lF~r 755 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG---ASEQNVRDLFER 755 (952)
T ss_pred cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc---ccHHHHHHHHHH
Confidence 344689999999999999999999999999987 345554332 233444554443
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.91 E-value=0.0023 Score=55.26 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLV 89 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~ll 89 (287)
+++-.++|.|+|||||||++..++... | +.++++++-.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~ 65 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS 65 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH
Confidence 356678899999999999999996542 2 3455554333
No 284
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.90 E-value=0.0011 Score=56.64 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDL 88 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~l 88 (287)
.+..++|.|++||||||+++.++.... +.+++..++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456788999999999999999997752 345555444
No 285
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.90 E-value=0.00087 Score=57.43 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++-+++|+||+||||||+...|+-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 566899999999999999999874
No 286
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.00074 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+-+++|.||+||||||+.++||--
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4558999999999999999999843
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.89 E-value=0.00099 Score=54.67 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--Ceeehh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATG 86 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d 86 (287)
++++.|+|||||||++..|+..+ |. .+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 57899999999999999999876 43 345654
No 288
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.87 E-value=0.001 Score=58.49 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++..++|.|++||||||+++.++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 344688999999999999999999875
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.87 E-value=0.00095 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+|.|+||+||||||+-+.+|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 5568999999999999999999874
No 290
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.001 Score=56.08 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.|+|.||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999998887764
No 291
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.0011 Score=58.23 Aligned_cols=27 Identities=37% Similarity=0.579 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
.++|.||||-||||+|..+|..+|...
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 689999999999999999999998754
No 292
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.86 E-value=0.00091 Score=64.17 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+|.-|+|.||||+|||++++.++..++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 45568999999999999999999998644
No 293
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.85 E-value=0.0011 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+|+|+|++||||||+.+.|+...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 294
>PRK13695 putative NTPase; Provisional
Probab=96.85 E-value=0.0011 Score=54.55 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
|.|+|+|++||||||+++.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999987765
No 295
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.84 E-value=0.0018 Score=55.65 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDL 88 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~l 88 (287)
...++|.|++|||||++++.++... .+.+++..+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3458899999999999999999876 4556666443
No 296
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0012 Score=58.82 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
..-.|+++||.|||||-+|+-||+.+++|+--.|.
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 44579999999999999999999999999865543
No 297
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.84 E-value=0.0011 Score=57.66 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..+|.|+||||+||||+...|...|
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 366799999999999999999998877
No 298
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.83 E-value=0.0011 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-++.|.||+||||||+-+.+|--
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5668999999999999999999854
No 299
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.83 E-value=0.0013 Score=59.51 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+||+||||||++..||..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357789999999999999999999877
No 300
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.82 E-value=0.0018 Score=62.14 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=51.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcc---------cHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREELASSGSLSQQLSEIVNQGKLV---------SDEI 117 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~---------~~~~ 117 (287)
.++-.++|.|+||+||||++..++... | +.+++..+-..+.......+|-.+.+++.+|... ..+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~ 340 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED 340 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHH
Confidence 356689999999999999999998754 3 4456554433333222223344455555555321 1133
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCC
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGF 142 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~ 142 (287)
....+.+.+.+... +-+|||+.
T Consensus 341 ~~~~i~~~i~~~~~---~~vvIDsi 362 (484)
T TIGR02655 341 HLQIIKSEIADFKP---ARIAIDSL 362 (484)
T ss_pred HHHHHHHHHHHcCC---CEEEEcCH
Confidence 44444555554332 47899973
No 301
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.81 E-value=0.0013 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998876
No 302
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.81 E-value=0.001 Score=60.66 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.-++.|.||+||||||+.++||--
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999853
No 303
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.80 E-value=0.021 Score=46.96 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=66.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC---CeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----------------ccH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGV---PHIATGDLVREELASSGSLSQQLSEIVNQGKL-----------------VSD 115 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~---~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----------------~~~ 115 (287)
+|+|+|..+|||.|++..|.++++. .++...+-++...... ++..+...+..+.. ...
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~--~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQE--HGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHH--hChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 4789999999999999999999874 3577767776655431 22222222222111 111
Q ss_pred HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC-ccEEEEEecCHHHHHHHHhC
Q 023080 116 EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD-IDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 116 ~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~ 177 (287)
+.+.+.+...+ . ...||+++.- ...+...+....+ .-+.|-+.+++++..+|.-.
T Consensus 79 ~~F~r~~~~~~---~---~~v~iIsD~R-r~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~ 134 (182)
T TIGR01223 79 GFFCRKIVEGI---S---QPIWLVSDTR-RVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV 134 (182)
T ss_pred cHHHHHHHhcc---C---CCEEEEeCCC-cccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence 22233222211 1 2478888763 3344555555433 33568999999999988843
No 304
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.80 E-value=0.0062 Score=51.81 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=57.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
+.|+|+|-|.|||||.|+.|.+.+.- .++-.+|-- -.+......+.. -....+...+...+...
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s----------~~EK~lRg~L~S~v~R~ 70 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDS----------QAEKALRGKLRSAVDRS 70 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCccccccc----------HHHHHHHHHHHHHHHhh
Confidence 46899999999999999999988721 222222211 001111111111 11122333444444444
Q ss_pred ccCCCccEEEeC--CCCCHHH-HHHHHH-hcCccEEEEEecCHHHHHHHHhCC
Q 023080 130 QAGGESGFILDG--FPRTVKQ-AEILEE-VMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 130 ~~~~~~g~Ildg--~p~~~~~-~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+ +.-+|+|. |-..... ..-+.+ ...--+||+..+|.+.+++--..|
T Consensus 71 Lsk-~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062|consen 71 LSK-GDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred ccc-CcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccC
Confidence 333 56788884 2111110 000111 112347899999999998766554
No 305
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0043 Score=58.95 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+-|.=|+++||||+|||-+|+.+|-.-|++++.+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 3555689999999999999999999999988754
No 306
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0041 Score=55.68 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
+-.+|+|+|+.|||||-|+--||.+|+...|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 456899999999999999999999999998887554
No 307
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0044 Score=59.77 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.|-=|+++||||||||-+|+..|..-|+.+|++
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 355689999999999999999999998888877
No 308
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.79 E-value=0.0012 Score=54.26 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=18.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+..++|.|++|+||||+.+.+.+.+
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999888776
No 309
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0015 Score=62.43 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
.+..++|.||||+||||+|+.+++.+++
T Consensus 35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 35 ISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3445889999999999999999999876
No 310
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0012 Score=64.48 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe--eehh
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH--IATG 86 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~--i~~d 86 (287)
...++++++|.||||.|||++++.+|+.+|-.+ +|++
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvG 472 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVG 472 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence 345888999999999999999999999998655 4553
No 311
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.78 E-value=0.0036 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.++-.++|.|+|||||||++..++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHH
Confidence 3567899999999999999988764
No 312
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00098 Score=60.43 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..++.-|.+.||||+|||-+|+.+|++-|..+|++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 33667799999999999999999999998887654
No 313
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.78 E-value=0.0016 Score=70.01 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLVR 90 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~llr 90 (287)
.+|.-|+++||||+|||.+|+.||...+++++ +..+++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 35556999999999999999999999998875 4455553
No 314
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0093 Score=58.96 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=28.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
=|++.||||+|||-+|+.+|..+.+.++|+
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 488999999999999999999999998887
No 315
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.74 E-value=0.0024 Score=53.00 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=30.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehhHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATGDLVRE 91 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d~llr~ 91 (287)
.+..++|.|++|+|||.+|..++.++ .+.++++.+++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 45679999999999999999998764 3457888888776
No 316
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0013 Score=52.59 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+++|.|+||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998876
No 317
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.73 E-value=0.0017 Score=54.05 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCC-eEEEEEcCCCCCHHHHHHHHHHHh----CCCeeeh
Q 023080 52 DRN-VQWVFLGCPGVGKGTYASRLSKFL----GVPHIAT 85 (287)
Q Consensus 52 ~~~-~~Ivi~G~pGSGKTTla~~La~~l----g~~~i~~ 85 (287)
.+| ..|.+.|||||||||+...+.+.+ .+.+|.-
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 355 789999999999999877765554 5666655
No 318
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.73 E-value=0.0016 Score=56.39 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGD 87 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ 87 (287)
..++|+||+|||||++++.++.... +.+++.++
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 3688999999999999999988754 45666654
No 319
>PRK06893 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.002 Score=55.64 Aligned_cols=31 Identities=16% Similarity=0.130 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT 85 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~ 85 (287)
+.++|.||||+|||++++.++..+ ++.++++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 467899999999999999999875 4556655
No 320
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.72 E-value=0.0017 Score=63.52 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+.+++||||.||||+|+.+|++-|+.++.+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 4667899999999999999999999988865
No 321
>COG4240 Predicted kinase [General function prediction only]
Probab=96.72 E-value=0.002 Score=54.86 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C---CCeeehhHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G---VPHIATGDLVRE 91 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g---~~~i~~d~llr~ 91 (287)
..+|.++.|+||-||||||++..|-..+ | ...+|.||+...
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt 93 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT 93 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc
Confidence 4579999999999999999998775544 3 345788887643
No 322
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.0018 Score=61.59 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.1
Q ss_pred cCCCCCCeE-EEEEcCCCCCHHHHHHHHHHHh
Q 023080 48 KAPKDRNVQ-WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 48 ~~~~~~~~~-Ivi~G~pGSGKTTla~~La~~l 78 (287)
.|-..+|++ +.++||||+||||+.+.|.+++
T Consensus 62 tp~d~PPPfIvavvGPpGtGKsTLirSlVrr~ 93 (1077)
T COG5192 62 TPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRF 93 (1077)
T ss_pred CcccCCCCeEEEeecCCCCChhHHHHHHHHHH
Confidence 343444444 5599999999999999999887
No 323
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.72 E-value=0.0018 Score=65.68 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..++|.||||+||||+++.||+.++..++.+
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 445789999999999999999999998776543
No 324
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.71 E-value=0.0015 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+|+++|++||||||+.+.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 56799999999999999999864
No 325
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.002 Score=56.59 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLVRE 91 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~llr~ 91 (287)
.+..++|.||||+|||+++..|+... |. .+++..+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45578999999999999999998764 33 23444444443
No 326
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.70 E-value=0.012 Score=54.01 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+...+++.|+.|||||++...|.+. +..++++-++.+.. ++.+|..- +..-+-..+...+...+...+.
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~~~------~~qpsQ~~Fe~~l~~~l~~~~~- 208 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGRLG------GPQPSQKDFENLLAEALLKLDP- 208 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccCCC------CCCcchHHHHHHHHHHHHcCCC-
Confidence 3346789999999999999999865 77899987766552 22222110 0111223345556666665443
Q ss_pred CCccEEEeCC---------CCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 133 GESGFILDGF---------PRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 133 ~~~g~Ildg~---------p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+.+++++- |.... +.+.. .-+|+|++|.+..++|+..-
T Consensus 209 -~~~i~vE~Es~~IG~~~lP~~l~--~~m~~----~~~v~i~~~~e~Rv~~l~~~ 256 (345)
T PRK11784 209 -ARPIVVEDESRRIGRVHLPEALY--EAMQQ----APIVVVEAPLEERVERLLED 256 (345)
T ss_pred -CCeEEEEeccccccCccCCHHHH--HHHhh----CCEEEEECCHHHHHHHHHHH
Confidence 256777742 22221 22222 24789999999999999864
No 327
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0019 Score=58.16 Aligned_cols=32 Identities=38% Similarity=0.600 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
.|..|+++||.|.|||-+|++||+--|.|++.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 67899999999999999999999988888774
No 328
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.68 E-value=0.017 Score=57.49 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
|.-|+|.||||+||||+++.++..++.+++.+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 33489999999999999999999999887654
No 329
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.67 E-value=0.0019 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
++|+|++|||||++|..++...+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC
Confidence 6889999999999999999876533
No 330
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.67 E-value=0.0016 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|++||||||+.+.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34678999999999999999999753
No 331
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.046 Score=47.35 Aligned_cols=110 Identities=23% Similarity=0.205 Sum_probs=67.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
....++|+|.|-..+||.-..+++.+.++-....+-.+ ..+-+.+.....+...+.+.+
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval---------------------~aPt~~E~~qwY~qRy~~~lP 129 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL---------------------PAPTDRERGQWYFQRYVAHLP 129 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec---------------------CCCChHhhccHHHHHHHHhCC
Confidence 34778899999999999999999999986444333111 111122222333444455555
Q ss_pred cCCCccEEEe-------------CCCCCHHHHHHHHHhc---------Ccc-EEEEEecCHHHHHHHHhCCCccc
Q 023080 131 AGGESGFILD-------------GFPRTVKQAEILEEVM---------DID-LVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 131 ~~~~~g~Ild-------------g~p~~~~~~~~l~~~~---------~~d-~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
+. +.-+|+| ||-....+.+.+..+. ++- +-+||+++.++..+|+..|.-+|
T Consensus 130 a~-GeiviFdRSwYnr~gVeRVmGfct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP 203 (270)
T COG2326 130 AA-GEIVIFDRSWYNRAGVERVMGFCTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDP 203 (270)
T ss_pred CC-CeEEEechhhccccCeeeccccCCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCH
Confidence 55 5566776 3422222223333221 122 44899999999999999998666
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.0023 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+||+|+||||++..|+..+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998765
No 333
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.66 E-value=0.0016 Score=62.96 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+..+++|.||||+||||+++.|++.+
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 3456789999999999999999999876
No 334
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.64 E-value=0.0046 Score=59.40 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+++-.++|.|+|||||||+|..++-
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~ 43 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLY 43 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3667899999999999999999843
No 335
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.63 E-value=0.02 Score=56.12 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=29.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-------CCCeeehhHHHHHHH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL-------GVPHIATGDLVREEL 93 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l-------g~~~i~~d~llr~~~ 93 (287)
++|.|++|+|||.|++.++..+ .+.+++..+++....
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 7899999999999999998865 235778777765543
No 336
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.63 E-value=0.0023 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..|.|+|++||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999887
No 337
>PHA03138 thymidine kinase; Provisional
Probab=96.63 E-value=0.12 Score=46.93 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.+-.+|.|.|+.|+||||.++.+.+.+
T Consensus 9 ~~~~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 9 KMCILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred CccEEEEEEECCCCcCHHhHHHHHHHhh
Confidence 4466789999999999999998776654
No 338
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.61 E-value=0.0016 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45578999999999999999998654
No 339
>PRK09183 transposase/IS protein; Provisional
Probab=96.61 E-value=0.0029 Score=55.70 Aligned_cols=37 Identities=38% Similarity=0.494 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLV 89 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~ll 89 (287)
+...++|+||+|+|||+++..|+... |. .+++..+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 45578899999999999999997553 33 345554554
No 340
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.61 E-value=0.0022 Score=51.42 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG 86 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d 86 (287)
..-++|+|++|+||||++..|.++ |..+++-|
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD 45 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD 45 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence 456899999999999999988875 66666543
No 341
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.61 E-value=0.002 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
....++|.|++||||||+.+.|...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999998765
No 342
>PLN03025 replication factor C subunit; Provisional
Probab=96.61 E-value=0.0021 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++|.||||+||||++..+++.+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999873
No 343
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.61 E-value=0.0019 Score=49.16 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~ 76 (287)
.|+|+|++|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999974
No 344
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.61 E-value=0.002 Score=57.01 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=26.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+...++.+|.|+|+||+||||+...|..+|
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 444578899999999999999999999887
No 345
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0019 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-.+.|.|++||||||+++.|+-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 5567899999999999999999853
No 346
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.005 Score=54.86 Aligned_cols=38 Identities=26% Similarity=0.438 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLV 89 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~ll 89 (287)
.+|..+.|.||||.|||-+|+.++...|+.++ +.+.+.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 36778889999999999999999999987654 344443
No 347
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.0024 Score=59.01 Aligned_cols=29 Identities=38% Similarity=0.551 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
.+-.++|.||+|+||||+++.+++.+++.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 34457899999999999999999998753
No 348
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.60 E-value=0.0021 Score=61.06 Aligned_cols=32 Identities=34% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 35567789999999999999999999998765
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0053 Score=53.64 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|.-|++.||||+|||-+|+..|.+.+..+|.+
T Consensus 209 dppkgvllygppgtgktl~aravanrtdacfirv 242 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRV 242 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccCceEEee
Confidence 3556688999999999999999999999988865
No 350
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.0018 Score=61.54 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+-.++|.||+|+||||+|+.||+.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4458999999999999999999999874
No 351
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.59 E-value=0.0023 Score=54.26 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
..++.|+|+|++||||||+.+.+...++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3577899999999999999999988754
No 352
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.58 E-value=0.002 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+|.|+|++||||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
No 353
>PRK10646 ADP-binding protein; Provisional
Probab=96.58 E-value=0.003 Score=50.87 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
.+.+|++.|.-|+||||+++.|++.+|.
T Consensus 27 ~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 27 GATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3457899999999999999999999986
No 354
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.57 E-value=0.002 Score=55.79 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.-..|.+++|+|++||||||+...|-..+
T Consensus 9 l~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 9 LLKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34577799999999999999988887655
No 355
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.57 E-value=0.0022 Score=53.52 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999998543
No 356
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0035 Score=54.35 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREE 92 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~ 92 (287)
.+|.-+++.||||+|||.+++..|.+....+|.+ ++++++.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 3555688999999999999999999876666543 3444443
No 357
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.56 E-value=0.0019 Score=60.13 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
-=|+|.|+||+||||+|+.||+.|
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 348899999999999999999988
No 358
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.55 E-value=0.0029 Score=63.74 Aligned_cols=29 Identities=38% Similarity=0.623 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
.++|+||||+|||++|+.||+.++.+++.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~ 518 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEE
Confidence 68899999999999999999999876653
No 359
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.55 E-value=0.0024 Score=59.16 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.+|..|.|+|++||||||++..|.+++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3788999999999999999999998875
No 360
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.55 E-value=0.0028 Score=56.99 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..++.+|.|+|++||||||++..|+..+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999998865
No 361
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.54 E-value=0.0025 Score=57.88 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++|.||||+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999873
No 362
>PRK13768 GTPase; Provisional
Probab=96.54 E-value=0.0025 Score=55.95 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+++.|++||||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4678999999999999999998776
No 363
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.53 E-value=0.0013 Score=56.24 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
-+++|||||||||.|.-..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHH
Confidence 5789999999999998776654
No 364
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.0031 Score=45.59 Aligned_cols=30 Identities=37% Similarity=0.413 Sum_probs=25.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCCeeehh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL---GVPHIATG 86 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d 86 (287)
+++.|..|+||||++..|+..+ |..++-+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6789999999999999999987 66666554
No 365
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.52 E-value=0.0019 Score=54.56 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
-.++|.|+||||||+++++|..-+
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCeEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999999876
No 366
>PRK04296 thymidine kinase; Provisional
Probab=96.51 E-value=0.0026 Score=53.31 Aligned_cols=25 Identities=16% Similarity=-0.008 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999998876
No 367
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.51 E-value=0.0024 Score=54.38 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 368
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.0025 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
.+..++|+||+|+||||+|+.||+.+++..
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 455689999999999999999999998754
No 369
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.51 E-value=0.0026 Score=57.90 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
.++|.|+||+|||++++.+|+.++.+++.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 48899999999999999999999876553
No 370
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.50 E-value=0.018 Score=51.85 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=53.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC-CeeehhHHHHHHHHcC-CchHHHHH-HHHh-cCCcccHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GV-PHIATGDLVREELASS-GSLSQQLS-EIVN-QGKLVSDEIIFNLLS 123 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~-~~i~~d~llr~~~~~~-~~~~~~i~-~~l~-~g~~~~~~~~~~~l~ 123 (287)
..+|.+|+|.|..|+||||-...||.+| |. +++...|.+|.....+ ..+++... .++. ....-|-.+..+.+.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 4579999999999999999999999988 44 4577788888743211 11222211 1111 112334455666666
Q ss_pred HHHHhcccCCCccEEEeC
Q 023080 124 KRLEAGQAGGESGFILDG 141 (287)
Q Consensus 124 ~~l~~~~~~~~~g~Ildg 141 (287)
.+..+. ..-+++|-
T Consensus 216 ~Akar~----~DvvliDT 229 (340)
T COG0552 216 AAKARG----IDVVLIDT 229 (340)
T ss_pred HHHHcC----CCEEEEeC
Confidence 655554 34577774
No 371
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.49 E-value=0.0025 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.181 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678999999999999999998754
No 372
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.49 E-value=0.0025 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 55689999999999999999998654
No 373
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.49 E-value=0.0023 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
. +++|+|++||||||+.+.|+-.+
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCC
Confidence 5 89999999999999999998543
No 374
>PRK08181 transposase; Validated
Probab=96.48 E-value=0.0044 Score=54.82 Aligned_cols=40 Identities=33% Similarity=0.491 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVREE 92 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~~ 92 (287)
+...++|+||+|+|||.++..++... | +.++++.+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 44569999999999999999998653 4 5567777777653
No 375
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.48 E-value=0.0034 Score=56.64 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.|..+++.|+||+||||+++.+++.++..++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 3456667999999999999999998865443
No 376
>PHA02624 large T antigen; Provisional
Probab=96.47 E-value=0.0035 Score=60.82 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
....|+|.|||||||||++..|.+.+|...+++
T Consensus 430 Kk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 430 KRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 445899999999999999999999997667765
No 377
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.0029 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-+++|+||+|+||||++..|+..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356688999999999999999999764
No 378
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.012 Score=59.94 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+--++|.|++|+||||+++.|++.+++.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 3457899999999999999999999864
No 379
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.46 E-value=0.0028 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 380
>PF13479 AAA_24: AAA domain
Probab=96.45 E-value=0.0023 Score=54.56 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..++|.|+||+||||++..+ =+..+|++
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~ 31 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDT 31 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEe
Confidence 5778999999999999999988 23446666
No 381
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.44 E-value=0.012 Score=54.77 Aligned_cols=111 Identities=27% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHHHcC-CchHHHHH-HHHhcC-CcccHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREELASS-GSLSQQLS-EIVNQG-KLVSDEIIFNLL 122 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~~~~-~~~~~~i~-~~l~~g-~~~~~~~~~~~l 122 (287)
+.+|.+|.+.|.-||||||.|..||.+| |.. .++. |+.|...-.. ..++..+. .++..+ ..-|-++..+.+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa-D~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al 175 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA-DTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAAL 175 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec-ccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHH
Confidence 4578899999999999999999999887 332 3444 5555422110 00111110 112222 223445555555
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHHH------HHhcCccEE-EEEec
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEIL------EEVMDIDLV-VNLKL 166 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l------~~~~~~d~v-i~L~~ 166 (287)
..+-... ..-+|+|-..+.....+.+ .....|+-+ +.+|+
T Consensus 176 ~~ak~~~----~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 176 EKAKEEG----YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHcC----CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5544433 3568888654443333333 333457744 45555
No 382
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.0027 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+..+-.|+||+||||||+.+.|-.-.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhc
Confidence 44567899999999999999886543
No 383
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.43 E-value=0.0034 Score=42.53 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+|+|+.||||||+...+.--
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999877543
No 384
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.43 E-value=0.0029 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+-+++|+||.||||||+.+.|+.-+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 56789999999999999999999865
No 385
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=96.43 E-value=0.04 Score=44.44 Aligned_cols=128 Identities=14% Similarity=0.077 Sum_probs=68.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHH--HHH-HHhcCCc-c---cHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQ--LSE-IVNQGKL-V---SDEIIFNL 121 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~--i~~-~l~~g~~-~---~~~~~~~~ 121 (287)
+.+..+|++-|.+-+|||++|..|-+... +-|+-+|-++.......-..+.- ... ....|+. + +-.+....
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~ 99 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELA 99 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHH
Confidence 44667888999999999999999988774 44666644443322211111100 000 0011110 0 01111111
Q ss_pred H---HHHHHhcccCCCccEEEeCCCCCHHHHHH-HHHhcCcc-EEEEEecCHHHHHHHHhCCC
Q 023080 122 L---SKRLEAGQAGGESGFILDGFPRTVKQAEI-LEEVMDID-LVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 122 l---~~~l~~~~~~~~~g~Ildg~p~~~~~~~~-l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+ ...+..-... +..+|.|.+-.+..+.-. +..+..++ +.|=+.+|.|++.+|-..|.
T Consensus 100 ~~~~r~ai~a~ad~-G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 100 MHSRRRAIRAYADN-GMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred HHHHHHHHHHHhcc-CcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 1 1122211111 456899988777655533 33333444 57788999999999987753
No 386
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.43 E-value=0.0029 Score=53.99 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998654
No 387
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.43 E-value=0.0037 Score=62.68 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
...++|.||||+||||+++.+++.++..++.++.
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3457899999999999999999988876665533
No 388
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.43 E-value=0.0028 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.-+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 55689999999999999999998654
No 389
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.003 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55678999999999999999998643
No 390
>PRK06921 hypothetical protein; Provisional
Probab=96.41 E-value=0.011 Score=52.25 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----CC--CeeehhHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL----GV--PHIATGDLVRE 91 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g~--~~i~~d~llr~ 91 (287)
....++|.|++|+|||+++..++..+ |. .+++..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 34568999999999999999998865 33 34555454443
No 391
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.41 E-value=0.0028 Score=54.69 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 55689999999999999999998644
No 392
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.41 E-value=0.003 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..-+++|+||+||||||..+++-.-.
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhccc
Confidence 56689999999999999999986543
No 393
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.41 E-value=0.0031 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998654
No 394
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.41 E-value=0.003 Score=53.61 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 395
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.003 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 396
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.40 E-value=0.0039 Score=63.17 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
++..++|.||||+||||+++.+++.++..++.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999877653
No 397
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.021 Score=56.14 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
.+-.++|+|++|+||||+++.|++.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456789999999999999999999987
No 398
>PRK08727 hypothetical protein; Validated
Probab=96.40 E-value=0.026 Score=48.79 Aligned_cols=34 Identities=21% Similarity=0.161 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--CeeehhHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---GV--PHIATGDLV 89 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g~--~~i~~d~ll 89 (287)
.++|.|++|||||+++..++... |. .++++.++.
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 48999999999999999986654 33 456665544
No 399
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.40 E-value=0.055 Score=46.33 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=27.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh-----C--CCeeehhHHHHHH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL-----G--VPHIATGDLVREE 92 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l-----g--~~~i~~d~llr~~ 92 (287)
++|.|++|+|||.+.+.++..+ + +.+++..++.+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~ 79 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF 79 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH
Confidence 6889999999999999998764 2 3467776766553
No 400
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0031 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 55689999999999999999998644
No 401
>PHA03133 thymidine kinase; Provisional
Probab=96.40 E-value=0.26 Score=45.06 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+-.+|.|.|+.|.||||.++.+....+
T Consensus 39 ~~~rvYlDG~~GvGKTTt~~~l~~a~~ 65 (368)
T PHA03133 39 ALLRIYVDGPHGLGKTTTAAALAAALG 65 (368)
T ss_pred eEEEEEEeCCCcCCHHHHHHHHHHhhC
Confidence 557899999999999999988888775
No 402
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.40 E-value=0.0031 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 403
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.39 E-value=0.0086 Score=54.22 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLV 89 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~ll 89 (287)
-++...+.|.|+|||||||+|-.++... | +.+|++...+
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 3466788899999999999998877654 2 3466664433
No 404
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.39 E-value=0.0031 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998654
No 405
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0027 Score=59.13 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=26.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.++.||||+||||+...+|..+++-++++
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 68999999999999999999999877654
No 406
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.39 E-value=0.0032 Score=53.38 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 407
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.39 E-value=0.0033 Score=52.72 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999998754
No 408
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0034 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+|+.||||||+.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998543
No 409
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.37 E-value=0.0033 Score=53.62 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999998654
No 410
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0034 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998654
No 411
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.37 E-value=0.003 Score=53.64 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 55679999999999999999998654
No 412
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0033 Score=60.54 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
-+-.++|+||||+||||+++.|++.+.+
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3445799999999999999999999865
No 413
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0034 Score=53.60 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 414
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0034 Score=54.09 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998765
No 415
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.36 E-value=0.0034 Score=53.81 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55689999999999999999999765
No 416
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.35 E-value=0.0033 Score=53.37 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=16.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+|.||||+||||+...+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 57889999999997666665554
No 417
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.35 E-value=0.0034 Score=54.13 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999998654
No 418
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0034 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 419
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.35 E-value=0.0036 Score=51.65 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45578999999999999999998654
No 420
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.0037 Score=60.58 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
+..++|.||+|+||||+|+.|++.+++
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445789999999999999999999875
No 421
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.34 E-value=0.0034 Score=52.89 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+|++||||||+.+.|+-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998654
No 422
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.34 E-value=0.0049 Score=53.72 Aligned_cols=36 Identities=33% Similarity=0.611 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGDLVRE 91 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~llr~ 91 (287)
.++|.|++|+|||+++..++..+ | +.++++.+++..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 58899999999999999999887 3 335566666544
No 423
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0033 Score=53.68 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998654
No 424
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.34 E-value=0.0048 Score=49.21 Aligned_cols=29 Identities=31% Similarity=0.332 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
..+-+|++.|.-||||||+++-|++.+|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 36678999999999999999999999985
No 425
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.34 E-value=0.0031 Score=59.36 Aligned_cols=26 Identities=38% Similarity=0.549 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
...|+|.|+||+||||+|+.|+..++
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 44688999999999999999999874
No 426
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.34 E-value=0.0036 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La 75 (287)
++-+++|.||.||||||+.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 55689999999999999999885
No 427
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.34 E-value=0.0035 Score=54.34 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45689999999999999999998654
No 428
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.052 Score=50.74 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
.+.-++|.||+|+||||+|..||+.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45568899999999999999999988664
No 429
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0038 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999998654
No 430
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.32 E-value=0.0039 Score=50.97 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|+.||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45579999999999999999998654
No 431
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.32 E-value=0.0039 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45589999999999999999998654
No 432
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.32 E-value=0.033 Score=53.04 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----C--CCeeehhHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL-----G--VPHIATGDLVRE 91 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l-----g--~~~i~~d~llr~ 91 (287)
-++|.|++|+|||++++.++..+ + +.+++..++..+
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 47889999999999999999876 2 346677666544
No 433
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.31 E-value=0.0035 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 434
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.31 E-value=0.0043 Score=56.74 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIA 84 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~ 84 (287)
-+..|+|.||||||||.+|-.+|+.+| +|+..
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 345789999999999999999999996 55543
No 435
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.31 E-value=0.012 Score=53.31 Aligned_cols=36 Identities=22% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehhH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATGD 87 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d~ 87 (287)
++..++.|.|||||||||+|-.++... | +.+|++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 366678899999999999999988554 3 44566533
No 436
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.31 E-value=0.0037 Score=53.27 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+..+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998643
No 437
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.30 E-value=0.0038 Score=53.97 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 55689999999999999999998654
No 438
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.30 E-value=0.0038 Score=53.58 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55689999999999999999998643
No 439
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.30 E-value=0.0051 Score=62.10 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=28.5
Q ss_pred CCe-EEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHH
Q 023080 53 RNV-QWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDL 88 (287)
Q Consensus 53 ~~~-~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~l 88 (287)
+|. .++|.||+|+|||++|+.||+.++..++ +++++
T Consensus 482 ~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 482 KPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred CCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 443 5789999999999999999999976544 44443
No 440
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.031 Score=55.93 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+-.++|+|++|+||||+++.|++.+++.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4457899999999999999999999874
No 441
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.30 E-value=0.0031 Score=54.00 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+.++|.||||+||||-...||..+
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 44578999999999999999999875
No 442
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.0038 Score=63.25 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
-+-.++|+||+|+||||+|+.|++.+++.
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34457899999999999999999999874
No 443
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0038 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++-+++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 556899999999999999999984
No 444
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.29 E-value=0.0049 Score=52.53 Aligned_cols=35 Identities=31% Similarity=0.322 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATG 86 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d 86 (287)
.++..+.|.|+|||||||+|..++... .+.+++++
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 356788899999999999999998765 23456553
No 445
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.29 E-value=0.023 Score=52.59 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
.|+|+||+||||||+.+.|.+.++ ...+.+.|-+.-.+..........+..+ |.-. ..+...+...+...
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~ev--g~~~--~~~~~~l~~aLR~~- 225 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQI--GRDV--DSFANGIRLALRRA- 225 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccccc--CCCc--cCHHHHHHHhhccC-
Confidence 578999999999999999988763 3345554444332211110000000001 1101 12445555556553
Q ss_pred cCCCccEEEeCCCCCHHHHHH-HHHhc-CccEEEEEec-CHHHHHHHHhCC
Q 023080 131 AGGESGFILDGFPRTVKQAEI-LEEVM-DIDLVVNLKL-CEDVLLEKCLGR 178 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~-l~~~~-~~d~vi~L~~-~~e~l~~Rl~~R 178 (287)
-.+|+-|--++.+.+.. +.... +-.++--+++ +....+.|+..-
T Consensus 226 ----PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s~~~ai~Rl~~~ 272 (372)
T TIGR02525 226 ----PKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQM 272 (372)
T ss_pred ----CCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCCHHHHHHHHHHh
Confidence 45777777777766554 33221 1112334444 556788888653
No 446
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.29 E-value=0.0039 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 447
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.28 E-value=0.0038 Score=54.07 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|+|+.||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5568999999999999999999865
No 448
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.0037 Score=58.52 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+--++|.||+|+||||+|..||+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3458899999999999999999999774
No 449
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.28 E-value=0.004 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 55689999999999999999998643
No 450
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.0045 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.|.+|+|+||.||||||++..||..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999776
No 451
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.0039 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45679999999999999999998654
No 452
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.28 E-value=0.0041 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|.|+.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998643
No 453
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.28 E-value=0.0037 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
-+++|+||.||||||+.+.++-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5788999999999999999974
No 454
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.27 E-value=0.0038 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
|.++|++||||||++..|+..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7889999999999999999876
No 455
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.27 E-value=0.004 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-.++|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45579999999999999999998654
No 456
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.27 E-value=0.005 Score=52.04 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeehh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIATG 86 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~d 86 (287)
++...+.|.|+||||||++|..++... | +.++++.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456789999999999999999988654 3 4566664
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.27 E-value=0.0044 Score=54.24 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=33.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhC---C--CeeehhHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLG---V--PHIATGDLVRE 91 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg---~--~~i~~d~llr~ 91 (287)
....+|..|++.|..||||||++++|-.++. . -+|++|-.++.
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 4456888999999999999999999988772 2 25666666554
No 458
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.26 E-value=0.0035 Score=55.08 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---G--VPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g--~~~i~~ 85 (287)
++.-.++|.|+||||||+++..++... | +.++++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~ 59 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST 59 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 356678999999999999999887654 3 345555
No 459
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.004 Score=54.25 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55689999999999999999998754
No 460
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.26 E-value=0.0041 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~ 76 (287)
.|+|+|++||||||+.++|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 461
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.26 E-value=0.004 Score=53.52 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0041 Score=53.92 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55679999999999999999998654
No 463
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.26 E-value=0.004 Score=53.63 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998654
No 464
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.26 E-value=0.005 Score=54.85 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.....|.|+|+|||||||+...|...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356788999999999999999888775
No 465
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.26 E-value=0.0043 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 466
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.25 E-value=0.0041 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55679999999999999999998654
No 467
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.24 E-value=0.004 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998754
No 468
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0039 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccC
Confidence 55689999999999999999998754
No 469
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0042 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998654
No 470
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0046 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998764
No 471
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.23 E-value=0.0047 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=18.3
Q ss_pred ccEEEEEecCHHHHHHHHhCCC
Q 023080 158 IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 158 ~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
||++|||++|++++++|+.+|+
T Consensus 68 pdl~IYL~~~~e~~~~RI~kRg 89 (146)
T PF01712_consen 68 PDLIIYLDASPETCLERIKKRG 89 (146)
T ss_dssp -SEEEEEE--HHHHHHHHHHCT
T ss_pred CCeEEEEeCCHHHHHHHHHHhC
Confidence 8999999999999999999995
No 472
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.23 E-value=0.0045 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..|+|+|.+|+||||+.++|..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 473
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0053 Score=60.37 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
+-.++|.||+|+||||+|+.||+.+++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999874
No 474
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.0047 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 475
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.22 E-value=0.0042 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~ 76 (287)
+|+++|++||||||+.++|..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~ 22 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTD 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999864
No 476
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.22 E-value=0.0046 Score=53.06 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++-+++|+|++||||||+.+.|+-.+.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 556899999999999999999986543
No 477
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0043 Score=54.19 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|+|+.||||||+.+.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5568999999999999999999864
No 478
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.21 E-value=0.0045 Score=53.10 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 55689999999999999999998654
No 479
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.21 E-value=0.0082 Score=60.61 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+..++|.||||+|||++++.|++++
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999999987
No 480
>PRK10908 cell division protein FtsE; Provisional
Probab=96.21 E-value=0.0046 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 481
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0044 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55689999999999999999998654
No 482
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0045 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45679999999999999999999654
No 483
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.20 E-value=0.0047 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 56689999999999999999998654
No 484
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.20 E-value=0.0034 Score=53.85 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
|+|.|+|||||||..+.+.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999874
No 485
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0046 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 55689999999999999999998664
No 486
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.19 E-value=0.0047 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 45678999999999999999998654
No 487
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.19 E-value=0.0046 Score=53.51 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 488
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.19 E-value=0.0047 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999998654
No 489
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0046 Score=53.27 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56689999999999999999998654
No 490
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.18 E-value=0.0052 Score=50.64 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.++.+...|+|+|.+|+||||+...|...
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34457788999999999999999998753
No 491
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.18 E-value=0.0052 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..|.|+|++||||||++..|...|
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999887
No 492
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.18 E-value=0.0049 Score=50.76 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|++||||||+.+.|..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh
Confidence 5778899999999999999999964
No 493
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.18 E-value=0.0048 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++++|.|..||||||+.+.|.+
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999985
No 494
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.0055 Score=58.63 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
.+--++|.||+|+||||+|+.||+.+++.
T Consensus 34 i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 34 IPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 34468999999999999999999988764
No 495
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0049 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+..+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 496
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0048 Score=52.94 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+|++||||||+.+.|+-.+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 45578999999999999999998654
No 497
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.17 E-value=0.0051 Score=48.18 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+|+|+|.+||||||+...|...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988754
No 498
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.17 E-value=0.0047 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 499
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0049 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999998754
No 500
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0044 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
-+++|+|+.||||||+.+.|+-.+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 688999999999999999998654
Done!