Query 023080
Match_columns 287
No_of_seqs 285 out of 2151
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 16:01:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 100.0 6.3E-44 2.2E-48 302.2 21.4 199 55-276 1-204 (206)
2 3gmt_A Adenylate kinase; ssgci 100.0 2.1E-42 7.2E-47 295.6 21.1 205 53-276 7-229 (230)
3 3umf_A Adenylate kinase; rossm 100.0 9.3E-39 3.2E-43 271.9 22.5 187 51-276 26-213 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 7E-37 2.4E-41 265.6 22.6 210 51-275 26-242 (243)
5 3dl0_A Adenylate kinase; phosp 100.0 2E-35 6.9E-40 251.3 22.1 203 55-276 1-214 (216)
6 3fb4_A Adenylate kinase; psych 100.0 6.7E-35 2.3E-39 247.9 22.2 203 55-276 1-214 (216)
7 3be4_A Adenylate kinase; malar 100.0 6.3E-34 2.1E-38 242.7 23.4 203 53-274 4-217 (217)
8 1aky_A Adenylate kinase; ATP:A 100.0 6.2E-33 2.1E-37 236.7 25.3 207 52-276 2-219 (220)
9 1ak2_A Adenylate kinase isoenz 100.0 6.7E-33 2.3E-37 238.8 25.0 208 50-276 12-230 (233)
10 1e4v_A Adenylate kinase; trans 100.0 1.1E-32 3.8E-37 234.3 22.2 201 55-274 1-213 (214)
11 2xb4_A Adenylate kinase; ATP-b 100.0 2.3E-32 7.7E-37 234.1 20.6 200 55-274 1-222 (223)
12 1zd8_A GTP:AMP phosphotransfer 100.0 2.1E-31 7.3E-36 228.3 22.3 206 52-278 5-216 (227)
13 1zak_A Adenylate kinase; ATP:A 100.0 6.3E-31 2.2E-35 224.6 19.6 206 52-277 3-211 (222)
14 2c95_A Adenylate kinase 1; tra 100.0 1.2E-26 4.1E-31 193.5 22.3 185 52-275 7-192 (196)
15 2cdn_A Adenylate kinase; phosp 100.0 8.6E-27 2.9E-31 195.8 21.3 181 49-275 15-200 (201)
16 1ukz_A Uridylate kinase; trans 100.0 2E-26 6.8E-31 193.7 22.3 187 51-275 12-200 (203)
17 2bwj_A Adenylate kinase 5; pho 99.9 2.3E-26 8E-31 192.1 20.8 185 53-276 11-196 (199)
18 1qf9_A UMP/CMP kinase, protein 99.9 9.1E-26 3.1E-30 187.3 23.6 183 53-276 5-191 (194)
19 3cm0_A Adenylate kinase; ATP-b 99.9 4.3E-26 1.5E-30 188.8 19.1 179 52-275 2-185 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.9 1.5E-25 5E-30 186.4 21.7 186 53-276 2-194 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 1.4E-23 4.6E-28 181.9 22.9 206 52-278 25-236 (246)
22 3lw7_A Adenylate kinase relate 99.8 2.2E-18 7.6E-23 140.0 19.2 170 55-276 2-176 (179)
23 2pbr_A DTMP kinase, thymidylat 99.8 5.4E-17 1.8E-21 134.4 17.8 161 55-276 1-191 (195)
24 3vaa_A Shikimate kinase, SK; s 99.7 2.9E-17 9.8E-22 137.5 15.4 167 53-277 24-196 (199)
25 4eaq_A DTMP kinase, thymidylat 99.7 4.1E-17 1.4E-21 139.8 16.0 177 51-277 23-225 (229)
26 3trf_A Shikimate kinase, SK; a 99.7 1.3E-16 4.4E-21 131.5 16.6 170 54-282 5-180 (185)
27 1nks_A Adenylate kinase; therm 99.7 3.4E-16 1.2E-20 129.3 17.2 169 55-275 2-194 (194)
28 2z0h_A DTMP kinase, thymidylat 99.7 4.1E-16 1.4E-20 129.4 17.5 168 55-277 1-192 (197)
29 1kht_A Adenylate kinase; phosp 99.7 9.7E-17 3.3E-21 132.5 13.4 117 54-177 3-135 (192)
30 3t61_A Gluconokinase; PSI-biol 99.7 3.4E-16 1.2E-20 131.0 16.0 161 53-278 17-181 (202)
31 2wwf_A Thymidilate kinase, put 99.7 1.2E-17 4E-22 140.5 6.6 173 52-277 8-200 (212)
32 4hlc_A DTMP kinase, thymidylat 99.7 8.8E-16 3E-20 129.3 17.2 174 54-277 2-201 (205)
33 2iyv_A Shikimate kinase, SK; t 99.7 2E-16 6.7E-21 130.3 12.8 165 55-279 3-171 (184)
34 2pt5_A Shikimate kinase, SK; a 99.7 2.8E-16 9.6E-21 127.3 13.5 110 55-179 1-114 (168)
35 4edh_A DTMP kinase, thymidylat 99.7 5.8E-15 2E-19 125.0 20.1 174 53-277 5-207 (213)
36 3v9p_A DTMP kinase, thymidylat 99.7 4.7E-16 1.6E-20 132.8 12.6 173 52-275 23-225 (227)
37 1ly1_A Polynucleotide kinase; 99.7 1.8E-15 6.1E-20 123.6 15.6 161 54-276 2-172 (181)
38 1zuh_A Shikimate kinase; alpha 99.7 4.4E-16 1.5E-20 126.5 11.7 105 55-178 8-117 (168)
39 1e6c_A Shikimate kinase; phosp 99.7 1.1E-15 3.8E-20 124.3 13.7 161 55-276 3-170 (173)
40 2v54_A DTMP kinase, thymidylat 99.7 9.1E-16 3.1E-20 128.1 13.1 167 53-277 3-191 (204)
41 1vht_A Dephospho-COA kinase; s 99.7 2.4E-15 8.1E-20 127.3 15.5 169 53-277 3-195 (218)
42 3lv8_A DTMP kinase, thymidylat 99.7 1.7E-15 5.7E-20 130.1 14.3 178 52-277 25-229 (236)
43 2rhm_A Putative kinase; P-loop 99.7 9.6E-16 3.3E-20 126.8 12.3 120 52-179 3-126 (193)
44 1jjv_A Dephospho-COA kinase; P 99.6 4.1E-15 1.4E-19 124.7 16.2 165 55-276 3-196 (206)
45 4tmk_A Protein (thymidylate ki 99.6 2.1E-15 7.3E-20 127.6 14.0 171 53-277 2-207 (213)
46 3hjn_A DTMP kinase, thymidylat 99.6 7.8E-15 2.7E-19 122.7 17.2 168 55-278 1-193 (197)
47 3kb2_A SPBC2 prophage-derived 99.6 7E-15 2.4E-19 119.2 15.6 150 55-278 2-168 (173)
48 2f6r_A COA synthase, bifunctio 99.6 3.1E-15 1.1E-19 131.9 14.1 171 50-276 71-268 (281)
49 1via_A Shikimate kinase; struc 99.6 1.6E-15 5.4E-20 124.0 10.6 158 56-277 6-167 (175)
50 4eun_A Thermoresistant glucoki 99.6 1.8E-14 6.3E-19 120.4 17.3 164 53-277 28-194 (200)
51 1y63_A LMAJ004144AAA protein; 99.6 4.7E-15 1.6E-19 122.4 13.0 110 53-179 9-122 (184)
52 1knq_A Gluconate kinase; ALFA/ 99.6 5.5E-14 1.9E-18 114.6 19.1 159 53-276 7-173 (175)
53 1nn5_A Similar to deoxythymidy 99.6 4.3E-15 1.5E-19 124.9 12.3 170 52-277 7-201 (215)
54 2plr_A DTMP kinase, probable t 99.6 6E-14 2.1E-18 117.5 18.5 173 53-276 3-207 (213)
55 3nwj_A ATSK2; P loop, shikimat 99.6 6.6E-15 2.2E-19 127.6 12.7 173 54-278 48-238 (250)
56 4i1u_A Dephospho-COA kinase; s 99.6 1.9E-14 6.3E-19 121.2 14.5 168 55-277 10-202 (210)
57 2vli_A Antibiotic resistance p 99.6 9.5E-14 3.2E-18 113.8 17.5 158 53-278 4-173 (183)
58 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 1.4E-14 4.9E-19 126.2 12.9 161 53-277 3-174 (260)
59 3ld9_A DTMP kinase, thymidylat 99.6 1E-14 3.6E-19 124.0 11.3 175 52-278 19-217 (223)
60 1cke_A CK, MSSA, protein (cyti 99.6 8.1E-15 2.8E-19 124.5 10.3 117 54-176 5-159 (227)
61 3iij_A Coilin-interacting nucl 99.6 2.3E-14 7.7E-19 117.6 12.5 110 52-179 9-118 (180)
62 1uf9_A TT1252 protein; P-loop, 99.6 5E-14 1.7E-18 117.3 14.2 169 51-278 5-195 (203)
63 2if2_A Dephospho-COA kinase; a 99.6 2E-14 7E-19 120.1 11.7 164 55-277 2-192 (204)
64 1ltq_A Polynucleotide kinase; 99.6 5.8E-15 2E-19 130.9 8.7 121 54-179 2-127 (301)
65 1kag_A SKI, shikimate kinase I 99.5 1.5E-14 5E-19 117.7 9.0 164 54-276 4-172 (173)
66 3tmk_A Thymidylate kinase; pho 99.5 1.1E-13 3.8E-18 117.2 14.0 178 52-278 3-204 (216)
67 2jaq_A Deoxyguanosine kinase; 99.5 1.3E-13 4.3E-18 114.8 14.2 169 55-277 1-201 (205)
68 3ake_A Cytidylate kinase; CMP 99.5 6.5E-13 2.2E-17 110.9 16.2 163 56-275 4-207 (208)
69 2qor_A Guanylate kinase; phosp 99.5 7.5E-13 2.5E-17 110.9 15.1 170 51-277 9-197 (204)
70 1uj2_A Uridine-cytidine kinase 99.5 1.7E-13 5.7E-18 118.7 9.9 115 52-178 20-171 (252)
71 2qt1_A Nicotinamide riboside k 99.5 4.1E-14 1.4E-18 118.7 5.1 174 49-276 16-205 (207)
72 1q3t_A Cytidylate kinase; nucl 99.4 5E-13 1.7E-17 114.5 11.8 42 51-92 13-54 (236)
73 1p5z_B DCK, deoxycytidine kina 99.4 1.2E-13 4E-18 120.4 7.2 34 50-83 20-54 (263)
74 2h92_A Cytidylate kinase; ross 99.4 3E-13 1E-17 114.3 9.5 173 54-276 3-217 (219)
75 3hdt_A Putative kinase; struct 99.4 7.7E-12 2.6E-16 106.4 16.7 174 52-277 12-219 (223)
76 4e22_A Cytidylate kinase; P-lo 99.4 5.1E-12 1.7E-16 109.4 15.2 41 52-92 25-65 (252)
77 2grj_A Dephospho-COA kinase; T 99.4 1.1E-12 3.7E-17 109.2 10.3 115 53-175 11-147 (192)
78 3fdi_A Uncharacterized protein 99.4 6.6E-12 2.3E-16 105.2 14.9 118 54-178 6-137 (201)
79 1m7g_A Adenylylsulfate kinase; 99.4 5.3E-13 1.8E-17 112.4 7.6 109 52-175 23-149 (211)
80 1qhx_A CPT, protein (chloramph 99.4 9.9E-12 3.4E-16 101.3 13.5 118 54-179 3-134 (178)
81 2yvu_A Probable adenylyl-sulfa 99.3 5.8E-12 2E-16 103.7 10.6 110 52-176 11-131 (186)
82 1gvn_B Zeta; postsegregational 99.3 7.7E-11 2.6E-15 104.0 16.7 119 51-179 30-163 (287)
83 2vp4_A Deoxynucleoside kinase; 99.3 5.8E-12 2E-16 107.5 7.1 79 157-277 146-225 (230)
84 2p5t_B PEZT; postsegregational 99.2 1.9E-11 6.6E-16 105.8 9.2 120 51-179 29-158 (253)
85 3r20_A Cytidylate kinase; stru 99.2 2.1E-10 7.2E-15 98.0 15.5 42 51-92 6-47 (233)
86 2pez_A Bifunctional 3'-phospho 99.2 5.4E-11 1.9E-15 97.2 10.9 111 52-178 3-125 (179)
87 3zvl_A Bifunctional polynucleo 99.2 6.3E-11 2.2E-15 109.9 12.4 101 51-180 255-359 (416)
88 2ocp_A DGK, deoxyguanosine kin 99.2 2.3E-10 7.7E-15 98.1 14.1 27 53-79 1-27 (241)
89 3tr0_A Guanylate kinase, GMP k 99.1 6.3E-11 2.1E-15 98.6 6.7 167 53-277 6-187 (205)
90 1x6v_B Bifunctional 3'-phospho 99.1 4.6E-10 1.6E-14 108.4 13.6 113 51-177 49-171 (630)
91 1gtv_A TMK, thymidylate kinase 99.1 2.9E-12 9.8E-17 107.5 -1.6 122 55-179 1-154 (214)
92 3tau_A Guanylate kinase, GMP k 99.1 9E-10 3.1E-14 92.4 13.7 169 51-278 5-190 (208)
93 3uie_A Adenylyl-sulfate kinase 99.1 4.2E-10 1.4E-14 93.7 11.2 110 52-175 23-140 (200)
94 2j41_A Guanylate kinase; GMP, 99.1 5.5E-11 1.9E-15 99.0 5.4 166 53-278 5-188 (207)
95 1ex7_A Guanylate kinase; subst 99.1 1.6E-10 5.4E-15 95.5 8.1 163 57-277 4-185 (186)
96 2axn_A 6-phosphofructo-2-kinas 99.1 1.1E-10 3.7E-15 111.2 6.6 121 51-179 32-169 (520)
97 2gks_A Bifunctional SAT/APS ki 99.0 6.7E-10 2.3E-14 106.3 9.6 112 52-176 370-488 (546)
98 3a00_A Guanylate kinase, GMP k 99.0 1.8E-09 6E-14 88.9 9.1 166 55-277 2-185 (186)
99 1m8p_A Sulfate adenylyltransfe 98.9 2.7E-09 9.2E-14 102.6 9.7 112 50-175 392-513 (573)
100 2ze6_A Isopentenyl transferase 98.9 2.6E-09 8.8E-14 92.4 7.8 120 55-179 2-139 (253)
101 1zp6_A Hypothetical protein AT 98.9 1.6E-08 5.6E-13 82.9 12.0 118 53-179 8-127 (191)
102 2bdt_A BH3686; alpha-beta prot 98.9 2E-08 6.8E-13 82.5 11.8 114 55-179 3-123 (189)
103 3ch4_B Pmkase, phosphomevalona 98.8 8.2E-08 2.8E-12 79.8 11.9 120 52-175 9-144 (202)
104 3asz_A Uridine kinase; cytidin 98.7 3.6E-08 1.2E-12 82.3 9.6 37 53-89 5-43 (211)
105 3lnc_A Guanylate kinase, GMP k 98.7 4E-08 1.4E-12 83.4 9.4 26 53-78 26-52 (231)
106 1a7j_A Phosphoribulokinase; tr 98.7 7E-09 2.4E-13 91.5 3.5 38 53-90 4-46 (290)
107 1p6x_A Thymidine kinase; P-loo 98.7 9.6E-08 3.3E-12 85.6 10.6 28 53-80 6-33 (334)
108 2jeo_A Uridine-cytidine kinase 98.7 1.7E-07 5.8E-12 80.3 11.8 29 53-81 24-52 (245)
109 1bif_A 6-phosphofructo-2-kinas 98.6 6.4E-08 2.2E-12 91.0 8.3 119 52-178 37-172 (469)
110 1rz3_A Hypothetical protein rb 98.6 2.3E-08 7.9E-13 83.2 4.5 119 51-179 19-165 (201)
111 3czq_A Putative polyphosphate 98.6 3.2E-07 1.1E-11 80.8 11.6 165 52-278 84-280 (304)
112 3cr8_A Sulfate adenylyltranfer 98.5 2.2E-07 7.4E-12 88.9 8.1 38 52-89 367-410 (552)
113 3a8t_A Adenylate isopentenyltr 98.5 1.1E-07 3.8E-12 85.1 5.4 36 53-88 39-74 (339)
114 1e2k_A Thymidine kinase; trans 98.5 2.3E-06 7.9E-11 76.5 13.6 28 52-79 2-29 (331)
115 3c8u_A Fructokinase; YP_612366 98.5 5.1E-07 1.7E-11 75.3 8.8 36 52-87 20-60 (208)
116 1of1_A Thymidine kinase; trans 98.4 7.4E-06 2.5E-10 74.3 16.3 29 51-79 46-74 (376)
117 1sq5_A Pantothenate kinase; P- 98.4 7.5E-07 2.6E-11 79.1 9.5 38 51-88 77-121 (308)
118 3tqc_A Pantothenate kinase; bi 98.4 1.4E-07 4.9E-12 84.1 4.7 38 51-88 89-133 (321)
119 1osn_A Thymidine kinase, VZV-T 98.4 1.9E-06 6.4E-11 77.3 11.8 30 52-81 10-40 (341)
120 1kgd_A CASK, peripheral plasma 98.4 7.8E-07 2.7E-11 72.5 8.6 27 53-79 4-30 (180)
121 1s96_A Guanylate kinase, GMP k 98.4 2.3E-06 7.9E-11 72.2 11.4 28 52-79 14-41 (219)
122 3ney_A 55 kDa erythrocyte memb 98.4 1.6E-06 5.3E-11 72.0 9.6 28 52-79 17-44 (197)
123 1lvg_A Guanylate kinase, GMP k 98.3 1.1E-05 3.8E-10 66.7 12.4 27 53-79 3-29 (198)
124 3czp_A Putative polyphosphate 98.2 3.2E-06 1.1E-10 79.6 9.0 106 52-182 41-172 (500)
125 3crm_A TRNA delta(2)-isopenten 98.1 9.5E-07 3.2E-11 78.7 3.4 35 54-88 5-39 (323)
126 3czp_A Putative polyphosphate 98.1 3.1E-06 1.1E-10 79.7 6.5 106 52-182 298-429 (500)
127 4gp7_A Metallophosphoesterase; 98.0 0.0002 6.8E-09 57.6 14.9 107 53-179 8-122 (171)
128 3d3q_A TRNA delta(2)-isopenten 97.9 5.4E-06 1.9E-10 74.3 3.9 34 55-88 8-41 (340)
129 3foz_A TRNA delta(2)-isopenten 97.9 7.1E-06 2.4E-10 72.5 4.3 35 53-87 9-43 (316)
130 1kjw_A Postsynaptic density pr 97.9 2.7E-05 9.3E-10 68.6 8.0 161 53-277 104-282 (295)
131 1dek_A Deoxynucleoside monopho 97.9 1.1E-05 3.6E-10 69.1 4.9 40 55-94 2-41 (241)
132 3t15_A Ribulose bisphosphate c 97.9 1.3E-05 4.3E-10 70.5 5.1 35 51-85 33-67 (293)
133 3exa_A TRNA delta(2)-isopenten 97.8 8.3E-06 2.8E-10 72.2 3.8 35 54-88 3-37 (322)
134 3rhf_A Putative polyphosphate 97.8 6E-05 2.1E-09 65.5 8.9 109 52-182 73-204 (289)
135 2ga8_A Hypothetical 39.9 kDa p 97.7 7.3E-06 2.5E-10 73.8 1.7 30 53-82 23-52 (359)
136 3eph_A TRNA isopentenyltransfe 97.7 1.9E-05 6.4E-10 72.3 3.9 34 54-87 2-35 (409)
137 1g8f_A Sulfate adenylyltransfe 97.7 1.7E-05 5.7E-10 75.0 3.0 36 52-87 393-435 (511)
138 4b4t_M 26S protease regulatory 97.7 3.3E-05 1.1E-09 71.5 4.7 34 52-85 213-246 (434)
139 4b4t_K 26S protease regulatory 97.6 3.3E-05 1.1E-09 71.4 4.5 34 52-85 204-237 (428)
140 4b4t_L 26S protease subunit RP 97.6 3.7E-05 1.3E-09 71.2 4.7 34 52-85 213-246 (437)
141 4b4t_J 26S protease regulatory 97.6 3.5E-05 1.2E-09 70.5 4.2 33 53-85 181-213 (405)
142 1lv7_A FTSH; alpha/beta domain 97.6 5.2E-05 1.8E-09 64.9 4.9 32 54-85 45-76 (257)
143 2qz4_A Paraplegin; AAA+, SPG7, 97.6 5.8E-05 2E-09 64.4 5.0 33 53-85 38-70 (262)
144 1odf_A YGR205W, hypothetical 3 97.6 5.1E-05 1.8E-09 66.6 4.4 39 51-89 28-74 (290)
145 3ec2_A DNA replication protein 97.5 9.1E-05 3.1E-09 59.8 5.2 39 53-91 37-81 (180)
146 3cf0_A Transitional endoplasmi 97.5 6E-05 2.1E-09 66.3 4.4 39 53-91 48-88 (301)
147 4b4t_H 26S protease regulatory 97.5 5.5E-05 1.9E-09 70.3 4.2 34 52-85 241-274 (467)
148 4b4t_I 26S protease regulatory 97.5 6.2E-05 2.1E-09 69.3 4.5 34 52-85 214-247 (437)
149 1g41_A Heat shock protein HSLU 97.5 6.2E-05 2.1E-09 69.9 4.4 34 53-86 49-82 (444)
150 3h4m_A Proteasome-activating n 97.5 7.4E-05 2.5E-09 64.8 4.5 33 53-85 50-82 (285)
151 3b9p_A CG5977-PA, isoform A; A 97.5 7.6E-05 2.6E-09 65.2 4.6 33 53-85 53-85 (297)
152 3hws_A ATP-dependent CLP prote 97.5 7E-05 2.4E-09 67.6 4.4 33 53-85 50-82 (363)
153 1d2n_A N-ethylmaleimide-sensit 97.5 0.0001 3.4E-09 63.7 5.1 34 52-85 62-95 (272)
154 1ye8_A Protein THEP1, hypothet 97.5 7E-05 2.4E-09 60.9 3.6 27 55-81 1-27 (178)
155 3cf2_A TER ATPase, transitiona 97.5 0.00019 6.4E-09 71.3 7.2 34 52-85 236-269 (806)
156 2xkx_A Disks large homolog 4; 97.4 0.00072 2.5E-08 66.7 11.3 162 53-278 530-709 (721)
157 3eie_A Vacuolar protein sortin 97.4 0.0001 3.5E-09 65.4 4.7 33 53-85 50-82 (322)
158 2x8a_A Nuclear valosin-contain 97.4 9.5E-05 3.2E-09 64.3 3.8 29 57-85 47-75 (274)
159 1ofh_A ATP-dependent HSL prote 97.4 0.00012 4.1E-09 63.9 4.3 32 54-85 50-81 (310)
160 2qmh_A HPR kinase/phosphorylas 97.4 9.6E-05 3.3E-09 61.1 3.4 34 53-87 33-66 (205)
161 1um8_A ATP-dependent CLP prote 97.4 0.00013 4.3E-09 66.2 4.4 32 54-85 72-103 (376)
162 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00016 5.4E-09 64.4 4.6 32 53-84 44-76 (322)
163 3cf2_A TER ATPase, transitiona 97.3 0.00035 1.2E-08 69.4 7.3 118 53-178 510-659 (806)
164 1jbk_A CLPB protein; beta barr 97.3 0.00018 6.2E-09 57.6 4.5 26 53-78 42-67 (195)
165 2qp9_X Vacuolar protein sortin 97.3 0.00016 5.6E-09 65.2 4.3 33 53-85 83-115 (355)
166 2p65_A Hypothetical protein PF 97.3 0.00015 5.1E-09 58.0 3.6 25 54-78 43-67 (187)
167 3syl_A Protein CBBX; photosynt 97.3 0.00017 5.7E-09 63.2 4.1 27 52-78 65-91 (309)
168 1ixz_A ATP-dependent metallopr 97.3 0.00017 5.7E-09 61.5 4.0 29 57-85 52-80 (254)
169 2r62_A Cell division protease 97.3 7.5E-05 2.5E-09 64.2 1.8 29 57-85 47-75 (268)
170 1in4_A RUVB, holliday junction 97.3 0.00021 7.1E-09 63.8 4.7 29 54-82 51-79 (334)
171 3kfv_A Tight junction protein 97.2 0.0017 6E-08 57.1 10.1 94 51-178 144-239 (308)
172 3d8b_A Fidgetin-like protein 1 97.2 0.00023 7.8E-09 64.2 4.5 33 53-85 116-148 (357)
173 2w58_A DNAI, primosome compone 97.2 0.00034 1.2E-08 57.4 5.0 38 54-91 54-96 (202)
174 3pfi_A Holliday junction ATP-d 97.2 0.00026 9.1E-09 62.8 4.7 32 54-85 55-86 (338)
175 2c9o_A RUVB-like 1; hexameric 97.2 0.00024 8.2E-09 66.2 4.6 33 53-85 62-96 (456)
176 3aez_A Pantothenate kinase; tr 97.2 0.00027 9.2E-09 62.6 4.4 28 51-78 87-114 (312)
177 1z6g_A Guanylate kinase; struc 97.2 0.00022 7.5E-09 59.7 3.4 26 53-78 22-47 (218)
178 1svm_A Large T antigen; AAA+ f 97.1 0.00033 1.1E-08 63.7 4.7 33 52-84 167-199 (377)
179 1iy2_A ATP-dependent metallopr 97.1 0.00028 9.5E-09 61.1 4.0 29 57-85 76-104 (278)
180 1znw_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 58.2 3.9 28 52-79 18-45 (207)
181 2ce7_A Cell division protein F 97.1 0.00038 1.3E-08 65.3 4.9 31 55-85 50-80 (476)
182 3tvt_A Disks large 1 tumor sup 97.1 0.0012 4E-08 58.0 7.7 158 57-278 103-278 (292)
183 3vfd_A Spastin; ATPase, microt 97.1 0.00036 1.2E-08 63.5 4.6 33 53-85 147-179 (389)
184 1tue_A Replication protein E1; 97.1 0.00028 9.4E-09 58.7 3.5 31 54-84 58-88 (212)
185 3bos_A Putative DNA replicatio 97.1 0.00033 1.1E-08 58.5 4.0 27 53-79 51-77 (242)
186 1xjc_A MOBB protein homolog; s 97.1 0.00039 1.3E-08 56.0 3.9 25 54-78 4-28 (169)
187 1sxj_A Activator 1 95 kDa subu 97.1 0.00039 1.3E-08 65.8 4.6 33 53-85 76-108 (516)
188 2zan_A Vacuolar protein sortin 97.0 0.0004 1.4E-08 64.5 4.2 38 53-90 166-206 (444)
189 3n70_A Transport activator; si 97.0 0.00041 1.4E-08 54.1 3.5 23 56-78 26-48 (145)
190 1rj9_A FTSY, signal recognitio 97.0 0.00057 2E-08 60.3 4.6 26 53-78 101-126 (304)
191 1l8q_A Chromosomal replication 97.0 0.00059 2E-08 60.3 4.5 37 53-89 36-77 (324)
192 4fcw_A Chaperone protein CLPB; 97.0 0.00063 2.2E-08 59.4 4.7 25 54-78 47-71 (311)
193 2kjq_A DNAA-related protein; s 96.9 0.00042 1.4E-08 54.5 3.0 26 53-78 35-60 (149)
194 1htw_A HI0065; nucleotide-bind 96.9 0.00073 2.5E-08 53.7 4.2 26 53-78 32-57 (158)
195 3pvs_A Replication-associated 96.9 0.0007 2.4E-08 63.0 4.6 31 55-85 51-81 (447)
196 1njg_A DNA polymerase III subu 96.9 0.00063 2.1E-08 56.4 3.9 27 54-80 45-71 (250)
197 3m6a_A ATP-dependent protease 96.9 0.00068 2.3E-08 64.6 4.5 33 53-85 107-139 (543)
198 1hqc_A RUVB; extended AAA-ATPa 96.9 0.00063 2.1E-08 59.8 3.8 30 55-84 39-68 (324)
199 1np6_A Molybdopterin-guanine d 96.9 0.00081 2.8E-08 54.4 4.1 25 54-78 6-30 (174)
200 2chg_A Replication factor C sm 96.8 0.00067 2.3E-08 55.5 3.6 22 57-78 41-62 (226)
201 3hu3_A Transitional endoplasmi 96.8 0.00078 2.7E-08 63.4 4.4 33 53-85 237-269 (489)
202 3e70_C DPA, signal recognition 96.8 0.00084 2.9E-08 59.9 4.4 27 52-78 127-153 (328)
203 1c9k_A COBU, adenosylcobinamid 96.8 0.0005 1.7E-08 55.9 2.6 25 57-82 2-26 (180)
204 2ehv_A Hypothetical protein PH 96.8 0.00068 2.3E-08 57.1 3.6 23 53-75 29-51 (251)
205 3uk6_A RUVB-like 2; hexameric 96.8 0.00092 3.1E-08 59.9 4.6 27 54-80 70-96 (368)
206 2r44_A Uncharacterized protein 96.8 0.00053 1.8E-08 60.8 3.0 29 56-84 48-76 (331)
207 4a74_A DNA repair and recombin 96.8 0.00075 2.6E-08 56.1 3.6 26 53-78 24-49 (231)
208 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00096 3.3E-08 62.9 4.6 30 56-85 66-95 (499)
209 3co5_A Putative two-component 96.8 0.00025 8.7E-09 55.2 0.5 27 56-83 29-55 (143)
210 3te6_A Regulatory protein SIR3 96.8 0.0006 2.1E-08 60.5 2.9 27 52-78 43-69 (318)
211 2qby_B CDC6 homolog 3, cell di 96.8 0.001 3.4E-08 59.9 4.5 26 53-78 44-69 (384)
212 2i3b_A HCR-ntpase, human cance 96.8 0.00081 2.8E-08 55.1 3.4 23 56-78 3-25 (189)
213 1vma_A Cell division protein F 96.8 0.001 3.6E-08 58.7 4.3 27 52-78 102-128 (306)
214 2v9p_A Replication protein E1; 96.7 0.00097 3.3E-08 58.8 4.0 27 53-79 125-151 (305)
215 2eyu_A Twitching motility prot 96.7 0.0011 3.8E-08 57.1 4.4 27 52-78 23-49 (261)
216 3pxg_A Negative regulator of g 96.7 0.0011 3.8E-08 61.9 4.6 32 54-85 201-242 (468)
217 2v1u_A Cell division control p 96.7 0.00084 2.9E-08 60.2 3.5 26 53-78 43-68 (387)
218 3b9q_A Chloroplast SRP recepto 96.7 0.0012 4.1E-08 58.2 4.3 27 52-78 98-124 (302)
219 2qby_A CDC6 homolog 1, cell di 96.7 0.001 3.5E-08 59.5 4.0 33 53-85 44-82 (386)
220 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0012 4E-08 54.9 4.0 26 53-78 22-47 (235)
221 1ypw_A Transitional endoplasmi 96.7 0.00087 3E-08 66.9 3.7 34 52-85 236-269 (806)
222 3tif_A Uncharacterized ABC tra 96.7 0.00091 3.1E-08 56.7 3.2 26 53-78 30-55 (235)
223 3u61_B DNA polymerase accessor 96.7 0.0011 3.7E-08 58.5 3.8 33 53-85 47-79 (324)
224 2orw_A Thymidine kinase; TMTK, 96.7 0.0013 4.3E-08 53.6 3.9 25 54-78 3-27 (184)
225 2cvh_A DNA repair and recombin 96.7 0.0011 3.9E-08 54.6 3.7 33 53-85 19-53 (220)
226 2qgz_A Helicase loader, putati 96.6 0.0017 5.6E-08 57.4 4.4 38 54-91 152-195 (308)
227 3kl4_A SRP54, signal recogniti 96.6 0.0016 5.4E-08 60.3 4.4 27 52-78 95-121 (433)
228 2r2a_A Uncharacterized protein 96.6 0.0014 4.9E-08 54.1 3.7 25 53-77 4-28 (199)
229 2pcj_A ABC transporter, lipopr 96.6 0.0011 3.9E-08 55.7 3.0 26 53-78 29-54 (224)
230 1fnn_A CDC6P, cell division co 96.6 0.0017 5.9E-08 58.3 4.4 23 56-78 46-68 (389)
231 2px0_A Flagellar biosynthesis 96.5 0.0017 5.8E-08 57.0 4.2 27 52-78 103-129 (296)
232 2f1r_A Molybdopterin-guanine d 96.5 0.00072 2.5E-08 54.5 1.6 24 55-78 3-26 (171)
233 3shw_A Tight junction protein 96.5 0.0079 2.7E-07 56.0 8.8 100 53-178 223-322 (468)
234 2onk_A Molybdate/tungstate ABC 96.5 0.0013 4.5E-08 55.9 3.3 24 55-78 25-48 (240)
235 2cbz_A Multidrug resistance-as 96.5 0.0013 4.5E-08 55.8 3.2 26 53-78 30-55 (237)
236 2fn4_A P23, RAS-related protei 96.5 0.0018 6.2E-08 51.2 3.9 27 51-77 6-32 (181)
237 2og2_A Putative signal recogni 96.5 0.0018 6.2E-08 58.4 4.3 27 52-78 155-181 (359)
238 3dm5_A SRP54, signal recogniti 96.5 0.0022 7.6E-08 59.4 4.8 27 52-78 98-124 (443)
239 2il1_A RAB12; G-protein, GDP, 96.5 0.0014 4.9E-08 53.0 3.1 25 52-76 24-48 (192)
240 1oix_A RAS-related protein RAB 96.5 0.0016 5.6E-08 52.8 3.5 25 53-77 28-52 (191)
241 2bjv_A PSP operon transcriptio 96.5 0.0016 5.6E-08 55.7 3.6 25 55-79 30-54 (265)
242 3pxi_A Negative regulator of g 96.5 0.002 6.7E-08 63.8 4.6 34 53-86 200-243 (758)
243 1b0u_A Histidine permease; ABC 96.5 0.0014 4.9E-08 56.4 3.2 26 53-78 31-56 (262)
244 1n0w_A DNA repair protein RAD5 96.5 0.0017 5.7E-08 54.5 3.5 25 53-77 23-47 (243)
245 1sxj_D Activator 1 41 kDa subu 96.5 0.0016 5.4E-08 57.8 3.6 23 57-79 61-83 (353)
246 1mv5_A LMRA, multidrug resista 96.5 0.0016 5.4E-08 55.5 3.4 26 53-78 27-52 (243)
247 2wjg_A FEOB, ferrous iron tran 96.5 0.0021 7.3E-08 51.4 4.0 24 53-76 6-29 (188)
248 3con_A GTPase NRAS; structural 96.5 0.0016 5.5E-08 52.3 3.2 26 52-77 19-44 (190)
249 1sxj_C Activator 1 40 kDa subu 96.4 0.0016 5.5E-08 58.0 3.5 23 57-79 49-71 (340)
250 3gfo_A Cobalt import ATP-bindi 96.4 0.0014 4.8E-08 56.9 3.0 26 53-78 33-58 (275)
251 3b85_A Phosphate starvation-in 96.4 0.0013 4.3E-08 54.8 2.6 25 53-77 21-45 (208)
252 1z2a_A RAS-related protein RAB 96.4 0.002 6.8E-08 50.3 3.6 25 53-77 4-28 (168)
253 4g1u_C Hemin import ATP-bindin 96.4 0.0015 5.2E-08 56.4 3.1 26 53-78 36-61 (266)
254 2olj_A Amino acid ABC transpor 96.4 0.0016 5.5E-08 56.2 3.2 26 53-78 49-74 (263)
255 1r6b_X CLPA protein; AAA+, N-t 96.4 0.0025 8.5E-08 63.0 5.0 30 55-84 489-518 (758)
256 2yhs_A FTSY, cell division pro 96.4 0.0022 7.6E-08 60.1 4.3 27 52-78 291-317 (503)
257 1lw7_A Transcriptional regulat 96.4 0.0015 5.2E-08 58.9 3.1 28 54-81 170-197 (365)
258 2ff7_A Alpha-hemolysin translo 96.4 0.0016 5.6E-08 55.6 3.1 26 53-78 34-59 (247)
259 1cr0_A DNA primase/helicase; R 96.4 0.0022 7.6E-08 55.8 4.1 26 53-78 34-59 (296)
260 2f9l_A RAB11B, member RAS onco 96.4 0.002 6.7E-08 52.5 3.5 24 54-77 5-28 (199)
261 3ihw_A Centg3; RAS, centaurin, 96.4 0.0025 8.6E-08 51.3 4.1 26 51-76 17-42 (184)
262 2ixe_A Antigen peptide transpo 96.4 0.0017 5.9E-08 56.2 3.2 26 53-78 44-69 (271)
263 2zu0_C Probable ATP-dependent 96.4 0.0021 7.1E-08 55.6 3.7 25 53-77 45-69 (267)
264 2wsm_A Hydrogenase expression/ 96.4 0.0026 8.8E-08 52.6 4.2 26 53-78 29-54 (221)
265 1g6h_A High-affinity branched- 96.4 0.0017 5.7E-08 55.8 3.1 26 53-78 32-57 (257)
266 2d2e_A SUFC protein; ABC-ATPas 96.4 0.002 6.9E-08 55.0 3.6 25 53-77 28-52 (250)
267 2ghi_A Transport protein; mult 96.4 0.0018 6.1E-08 55.8 3.2 26 53-78 45-70 (260)
268 1vpl_A ABC transporter, ATP-bi 96.4 0.0018 6.1E-08 55.7 3.2 26 53-78 40-65 (256)
269 1ji0_A ABC transporter; ATP bi 96.4 0.0017 5.9E-08 55.1 3.1 26 53-78 31-56 (240)
270 2z4s_A Chromosomal replication 96.4 0.0023 7.7E-08 59.4 4.1 35 54-88 130-171 (440)
271 2a5j_A RAS-related protein RAB 96.4 0.0026 9E-08 51.2 4.1 26 52-77 19-44 (191)
272 2h17_A ADP-ribosylation factor 96.4 0.0018 6.3E-08 51.7 3.1 28 49-76 16-43 (181)
273 1z06_A RAS-related protein RAB 96.4 0.0022 7.5E-08 51.6 3.6 25 52-76 18-42 (189)
274 1kao_A RAP2A; GTP-binding prot 96.4 0.0023 7.8E-08 49.7 3.6 25 53-77 2-26 (167)
275 3tqf_A HPR(Ser) kinase; transf 96.4 0.0022 7.5E-08 51.7 3.4 31 54-85 16-46 (181)
276 1sgw_A Putative ABC transporte 96.4 0.0016 5.3E-08 54.5 2.6 26 53-78 34-59 (214)
277 1g8p_A Magnesium-chelatase 38 96.4 0.0011 3.9E-08 58.8 1.9 23 57-79 48-70 (350)
278 2wji_A Ferrous iron transport 96.4 0.0022 7.5E-08 50.5 3.4 23 54-76 3-25 (165)
279 1iqp_A RFCS; clamp loader, ext 96.3 0.0024 8.3E-08 55.9 4.0 24 56-79 48-71 (327)
280 1jr3_A DNA polymerase III subu 96.3 0.0024 8.2E-08 57.1 4.1 27 54-80 38-64 (373)
281 2pze_A Cystic fibrosis transme 96.3 0.0018 6.2E-08 54.6 3.1 26 53-78 33-58 (229)
282 2lkc_A Translation initiation 96.3 0.003 1E-07 49.9 4.2 26 51-76 5-30 (178)
283 1upt_A ARL1, ADP-ribosylation 96.3 0.0032 1.1E-07 49.3 4.3 25 52-76 5-29 (171)
284 1sxj_E Activator 1 40 kDa subu 96.3 0.0023 7.8E-08 57.0 3.9 22 57-78 39-60 (354)
285 1u0j_A DNA replication protein 96.3 0.0029 1E-07 54.6 4.3 27 54-80 104-130 (267)
286 3c5c_A RAS-like protein 12; GD 96.3 0.0024 8E-08 51.5 3.6 26 52-77 19-44 (187)
287 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0022 7.5E-08 57.8 3.6 26 53-78 29-54 (359)
288 2qm8_A GTPase/ATPase; G protei 96.3 0.0029 9.9E-08 56.5 4.4 27 52-78 53-79 (337)
289 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0021 7.2E-08 50.8 3.1 24 53-76 6-29 (177)
290 1ypw_A Transitional endoplasmi 96.3 0.0011 3.8E-08 66.1 1.8 33 53-85 510-542 (806)
291 2ce2_X GTPase HRAS; signaling 96.3 0.0024 8.3E-08 49.4 3.5 24 54-77 3-26 (166)
292 1zd9_A ADP-ribosylation factor 96.3 0.0023 7.8E-08 51.5 3.4 25 52-76 20-44 (188)
293 2b8t_A Thymidine kinase; deoxy 96.3 0.0031 1.1E-07 53.0 4.3 27 52-78 10-36 (223)
294 2p5s_A RAS and EF-hand domain 96.3 0.0028 9.5E-08 51.5 3.8 28 50-77 24-51 (199)
295 2ged_A SR-beta, signal recogni 96.3 0.0029 1E-07 50.9 3.9 26 52-77 46-71 (193)
296 2yz2_A Putative ABC transporte 96.3 0.0021 7.3E-08 55.4 3.2 26 53-78 32-57 (266)
297 2dr3_A UPF0273 protein PH0284; 96.3 0.0028 9.5E-08 53.1 3.9 25 53-77 22-46 (247)
298 2qi9_C Vitamin B12 import ATP- 96.3 0.0021 7.3E-08 54.9 3.1 26 53-78 25-50 (249)
299 2ihy_A ABC transporter, ATP-bi 96.3 0.0021 7.1E-08 55.9 3.1 26 53-78 46-71 (279)
300 2ewv_A Twitching motility prot 96.3 0.003 1E-07 57.2 4.2 26 53-78 135-160 (372)
301 3llu_A RAS-related GTP-binding 96.3 0.0017 5.8E-08 52.8 2.3 29 49-77 15-43 (196)
302 3p32_A Probable GTPase RV1496/ 96.3 0.0029 1E-07 56.8 4.1 27 52-78 77-103 (355)
303 2hf9_A Probable hydrogenase ni 96.3 0.0033 1.1E-07 52.1 4.2 26 53-78 37-62 (226)
304 1u8z_A RAS-related protein RAL 96.2 0.003 1E-07 49.1 3.6 25 53-77 3-27 (168)
305 1ky3_A GTP-binding protein YPT 96.2 0.0029 9.8E-08 50.0 3.6 26 52-77 6-31 (182)
306 3rlf_A Maltose/maltodextrin im 96.2 0.0027 9.3E-08 57.7 3.7 26 53-78 28-53 (381)
307 3kkq_A RAS-related protein M-R 96.2 0.0035 1.2E-07 49.9 4.1 26 52-77 16-41 (183)
308 2www_A Methylmalonic aciduria 96.2 0.0033 1.1E-07 56.4 4.3 27 52-78 72-98 (349)
309 2gj8_A MNME, tRNA modification 96.2 0.0029 9.9E-08 50.3 3.5 25 53-77 3-27 (172)
310 2yyz_A Sugar ABC transporter, 96.2 0.0028 9.5E-08 57.2 3.8 26 53-78 28-53 (359)
311 3tsz_A Tight junction protein 96.2 0.014 4.7E-07 53.2 8.4 100 53-178 231-330 (391)
312 1svi_A GTP-binding protein YSX 96.2 0.0032 1.1E-07 50.6 3.8 25 52-76 21-45 (195)
313 3bc1_A RAS-related protein RAB 96.2 0.0031 1E-07 50.4 3.6 25 52-76 9-33 (195)
314 2gf9_A RAS-related protein RAB 96.2 0.0033 1.1E-07 50.5 3.8 25 53-77 21-45 (189)
315 2hxs_A RAB-26, RAS-related pro 96.2 0.0036 1.2E-07 49.4 4.0 25 52-76 4-28 (178)
316 2nq2_C Hypothetical ABC transp 96.2 0.0023 8E-08 54.8 3.0 26 53-78 30-55 (253)
317 1c1y_A RAS-related protein RAP 96.2 0.0032 1.1E-07 49.0 3.6 24 53-76 2-25 (167)
318 2h57_A ADP-ribosylation factor 96.2 0.0023 7.8E-08 51.5 2.8 28 50-77 17-44 (190)
319 2dyk_A GTP-binding protein; GT 96.2 0.0033 1.1E-07 48.7 3.7 23 55-77 2-24 (161)
320 2it1_A 362AA long hypothetical 96.2 0.0029 1E-07 57.1 3.7 26 53-78 28-53 (362)
321 3sop_A Neuronal-specific septi 96.2 0.0031 1.1E-07 54.6 3.8 24 55-78 3-26 (270)
322 1zu4_A FTSY; GTPase, signal re 96.2 0.0036 1.2E-07 55.5 4.3 27 52-78 103-129 (320)
323 4bas_A ADP-ribosylation factor 96.2 0.0028 9.5E-08 51.1 3.3 28 49-76 12-39 (199)
324 2nzj_A GTP-binding protein REM 96.2 0.0032 1.1E-07 49.5 3.6 24 53-76 3-26 (175)
325 1nrj_B SR-beta, signal recogni 96.2 0.0036 1.2E-07 51.5 4.0 27 52-78 10-36 (218)
326 3clv_A RAB5 protein, putative; 96.2 0.0041 1.4E-07 50.0 4.2 25 53-77 6-30 (208)
327 2chq_A Replication factor C sm 96.2 0.0031 1.1E-07 54.9 3.7 22 57-78 41-62 (319)
328 1z47_A CYSA, putative ABC-tran 96.2 0.003 1E-07 56.9 3.6 26 53-78 40-65 (355)
329 3jvv_A Twitching mobility prot 96.2 0.0039 1.3E-07 56.1 4.4 26 53-78 122-147 (356)
330 1v43_A Sugar-binding transport 96.2 0.0031 1.1E-07 57.1 3.7 26 53-78 36-61 (372)
331 1z0f_A RAB14, member RAS oncog 96.1 0.0033 1.1E-07 49.5 3.5 25 53-77 14-38 (179)
332 2g6b_A RAS-related protein RAB 96.1 0.0036 1.2E-07 49.5 3.6 27 51-77 7-33 (180)
333 3pqc_A Probable GTP-binding pr 96.1 0.0046 1.6E-07 49.5 4.3 26 52-77 21-46 (195)
334 1ek0_A Protein (GTP-binding pr 96.1 0.003 1E-07 49.3 3.1 24 54-77 3-26 (170)
335 1nlf_A Regulatory protein REPA 96.1 0.0032 1.1E-07 54.4 3.4 26 53-78 29-54 (279)
336 2zej_A Dardarin, leucine-rich 96.1 0.0027 9.4E-08 50.9 2.8 22 55-76 3-24 (184)
337 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0032 1.1E-07 50.2 3.2 25 53-77 3-27 (189)
338 2oil_A CATX-8, RAS-related pro 96.1 0.0037 1.3E-07 50.3 3.6 26 52-77 23-48 (193)
339 1fzq_A ADP-ribosylation factor 96.1 0.0039 1.3E-07 49.9 3.7 25 52-76 14-38 (181)
340 2qen_A Walker-type ATPase; unk 96.1 0.0038 1.3E-07 55.0 4.0 32 55-86 32-63 (350)
341 1moz_A ARL1, ADP-ribosylation 96.1 0.0028 9.4E-08 50.4 2.8 24 52-75 16-39 (183)
342 1g16_A RAS-related protein SEC 96.1 0.0037 1.3E-07 48.8 3.5 23 54-76 3-25 (170)
343 2gza_A Type IV secretion syste 96.1 0.0024 8.3E-08 57.6 2.6 27 53-79 174-200 (361)
344 3lxx_A GTPase IMAP family memb 96.1 0.0034 1.2E-07 52.8 3.4 26 51-76 26-51 (239)
345 1sxj_B Activator 1 37 kDa subu 96.1 0.0038 1.3E-07 54.5 3.8 22 57-78 45-66 (323)
346 2pjz_A Hypothetical protein ST 96.1 0.0028 9.5E-08 54.7 2.8 25 54-78 30-54 (263)
347 1g29_1 MALK, maltose transport 96.1 0.0035 1.2E-07 56.8 3.6 26 53-78 28-53 (372)
348 1xx6_A Thymidine kinase; NESG, 96.1 0.0058 2E-07 50.0 4.6 26 53-78 7-32 (191)
349 1pui_A ENGB, probable GTP-bind 96.1 0.0024 8.1E-08 52.2 2.3 25 52-76 24-48 (210)
350 3tui_C Methionine import ATP-b 96.1 0.0038 1.3E-07 56.4 3.7 26 53-78 53-78 (366)
351 2erx_A GTP-binding protein DI- 96.1 0.0038 1.3E-07 48.8 3.4 24 53-76 2-25 (172)
352 3lxw_A GTPase IMAP family memb 96.1 0.0035 1.2E-07 53.3 3.4 25 52-76 19-43 (247)
353 2gf0_A GTP-binding protein DI- 96.1 0.0049 1.7E-07 49.7 4.1 25 52-76 6-30 (199)
354 1z08_A RAS-related protein RAB 96.1 0.0036 1.2E-07 48.9 3.3 25 53-77 5-29 (170)
355 1yrb_A ATP(GTP)binding protein 96.0 0.0053 1.8E-07 52.1 4.5 28 51-78 11-38 (262)
356 2y8e_A RAB-protein 6, GH09086P 96.0 0.0032 1.1E-07 49.6 2.9 24 53-76 13-36 (179)
357 2bov_A RAla, RAS-related prote 96.0 0.0046 1.6E-07 50.1 3.9 26 52-77 12-37 (206)
358 1m7b_A RND3/RHOE small GTP-bin 96.0 0.004 1.4E-07 49.8 3.5 26 52-77 5-30 (184)
359 1z0j_A RAB-22, RAS-related pro 96.0 0.0035 1.2E-07 48.9 3.1 25 53-77 5-29 (170)
360 1r2q_A RAS-related protein RAB 96.0 0.0028 9.6E-08 49.4 2.5 24 53-76 5-28 (170)
361 2a9k_A RAS-related protein RAL 96.0 0.0042 1.5E-07 49.3 3.6 25 53-77 17-41 (187)
362 3pxi_A Negative regulator of g 96.0 0.005 1.7E-07 61.0 4.7 26 53-78 519-545 (758)
363 3t5g_A GTP-binding protein RHE 96.0 0.0031 1.1E-07 50.1 2.7 24 53-76 5-28 (181)
364 2bbs_A Cystic fibrosis transme 96.0 0.0034 1.1E-07 55.0 3.1 26 53-78 63-88 (290)
365 3d31_A Sulfate/molybdate ABC t 96.0 0.0026 8.8E-08 57.2 2.4 26 53-78 25-50 (348)
366 3gd7_A Fusion complex of cysti 96.0 0.0039 1.3E-07 56.9 3.6 25 53-77 46-70 (390)
367 3q72_A GTP-binding protein RAD 96.0 0.0041 1.4E-07 48.5 3.3 22 54-75 2-23 (166)
368 2efe_B Small GTP-binding prote 96.0 0.004 1.4E-07 49.3 3.3 25 52-76 10-34 (181)
369 3oes_A GTPase rhebl1; small GT 96.0 0.0043 1.5E-07 50.5 3.5 26 52-77 22-47 (201)
370 2j1l_A RHO-related GTP-binding 96.0 0.0041 1.4E-07 51.2 3.4 26 51-76 31-56 (214)
371 3tw8_B RAS-related protein RAB 96.0 0.0038 1.3E-07 49.3 3.1 25 52-76 7-31 (181)
372 1pzn_A RAD51, DNA repair and r 96.0 0.0037 1.3E-07 56.1 3.3 26 53-78 130-155 (349)
373 3tkl_A RAS-related protein RAB 96.0 0.0047 1.6E-07 49.6 3.6 26 52-77 14-39 (196)
374 3q85_A GTP-binding protein REM 96.0 0.0047 1.6E-07 48.3 3.5 22 55-76 3-24 (169)
375 1a5t_A Delta prime, HOLB; zinc 96.0 0.0062 2.1E-07 54.1 4.7 30 53-82 23-52 (334)
376 2vhj_A Ntpase P4, P4; non- hyd 96.0 0.0044 1.5E-07 55.0 3.6 33 53-85 122-156 (331)
377 3ozx_A RNAse L inhibitor; ATP 96.0 0.005 1.7E-07 58.6 4.2 35 44-78 15-49 (538)
378 2v3c_C SRP54, signal recogniti 95.9 0.0033 1.1E-07 58.1 3.0 26 53-78 98-123 (432)
379 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0035 1.2E-07 58.4 3.1 26 53-78 137-162 (460)
380 2atv_A RERG, RAS-like estrogen 95.9 0.0055 1.9E-07 49.5 3.9 26 52-77 26-51 (196)
381 3nh6_A ATP-binding cassette SU 95.9 0.0025 8.5E-08 56.2 1.9 26 53-78 79-104 (306)
382 3cbq_A GTP-binding protein REM 95.9 0.0036 1.2E-07 50.9 2.7 24 52-75 21-44 (195)
383 2j37_W Signal recognition part 95.9 0.0053 1.8E-07 57.8 4.1 27 52-78 99-125 (504)
384 2gco_A H9, RHO-related GTP-bin 95.9 0.0052 1.8E-07 50.0 3.7 28 50-77 21-48 (201)
385 2fg5_A RAB-22B, RAS-related pr 95.9 0.0042 1.4E-07 50.1 3.1 26 52-77 21-46 (192)
386 1p9r_A General secretion pathw 95.9 0.0062 2.1E-07 56.1 4.5 27 53-79 166-192 (418)
387 2b6h_A ADP-ribosylation factor 95.9 0.0066 2.2E-07 49.1 4.2 25 51-75 26-50 (192)
388 1m2o_B GTP-binding protein SAR 95.9 0.005 1.7E-07 49.7 3.4 25 52-76 21-45 (190)
389 2bme_A RAB4A, RAS-related prot 95.9 0.0055 1.9E-07 48.8 3.6 26 52-77 8-33 (186)
390 2q3h_A RAS homolog gene family 95.9 0.0055 1.9E-07 49.6 3.7 26 51-76 17-42 (201)
391 3bwd_D RAC-like GTP-binding pr 95.9 0.0061 2.1E-07 48.2 3.8 25 53-77 7-31 (182)
392 2xtp_A GTPase IMAP family memb 95.9 0.0054 1.8E-07 52.2 3.7 27 51-77 19-45 (260)
393 3t1o_A Gliding protein MGLA; G 95.8 0.0042 1.4E-07 49.8 2.8 27 52-78 12-38 (198)
394 1nij_A Hypothetical protein YJ 95.8 0.0043 1.5E-07 54.9 3.2 24 54-77 4-27 (318)
395 1qvr_A CLPB protein; coiled co 95.8 0.0041 1.4E-07 62.4 3.3 25 54-78 191-215 (854)
396 1ksh_A ARF-like protein 2; sma 95.8 0.0057 2E-07 48.8 3.6 25 52-76 16-40 (186)
397 1zcb_A G alpha I/13; GTP-bindi 95.8 0.0068 2.3E-07 54.7 4.5 28 52-79 31-58 (362)
398 3hr8_A Protein RECA; alpha and 95.8 0.0061 2.1E-07 54.9 4.1 26 53-78 60-85 (356)
399 3nbx_X ATPase RAVA; AAA+ ATPas 95.8 0.0029 9.9E-08 59.6 2.0 24 56-79 43-66 (500)
400 1zj6_A ADP-ribosylation factor 95.8 0.0065 2.2E-07 48.6 3.9 25 52-76 14-38 (187)
401 1oxx_K GLCV, glucose, ABC tran 95.8 0.0027 9.3E-08 57.1 1.7 26 53-78 30-55 (353)
402 2qu8_A Putative nucleolar GTP- 95.8 0.0074 2.5E-07 50.2 4.3 25 52-76 27-51 (228)
403 1vg8_A RAS-related protein RAB 95.8 0.0058 2E-07 49.6 3.6 26 52-77 6-31 (207)
404 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0057 1.9E-07 48.5 3.4 24 53-76 4-27 (186)
405 2p67_A LAO/AO transport system 95.8 0.007 2.4E-07 54.1 4.2 27 52-78 54-80 (341)
406 1r8s_A ADP-ribosylation factor 95.8 0.0069 2.4E-07 47.0 3.7 22 56-77 2-23 (164)
407 3iev_A GTP-binding protein ERA 95.7 0.0051 1.8E-07 54.1 3.2 28 49-76 5-32 (308)
408 3k53_A Ferrous iron transport 95.7 0.006 2.1E-07 52.4 3.6 24 54-77 3-26 (271)
409 4dey_A Voltage-dependent L-typ 95.7 0.064 2.2E-06 47.6 10.2 118 51-179 141-273 (337)
410 1ls1_A Signal recognition part 95.7 0.0075 2.6E-07 52.8 4.2 26 53-78 97-122 (295)
411 3reg_A RHO-like small GTPase; 95.7 0.0059 2E-07 49.2 3.2 26 52-77 21-46 (194)
412 1f6b_A SAR1; gtpases, N-termin 95.7 0.0069 2.3E-07 49.3 3.6 25 52-76 23-47 (198)
413 1ojl_A Transcriptional regulat 95.7 0.0055 1.9E-07 53.8 3.2 24 55-78 26-49 (304)
414 2fh5_B SR-beta, signal recogni 95.7 0.0066 2.3E-07 49.7 3.5 25 53-77 6-30 (214)
415 2g3y_A GTP-binding protein GEM 95.7 0.0067 2.3E-07 50.3 3.6 24 53-76 36-59 (211)
416 2iwr_A Centaurin gamma 1; ANK 95.7 0.006 2.1E-07 48.2 3.2 25 53-77 6-30 (178)
417 3cph_A RAS-related protein SEC 95.7 0.0075 2.6E-07 49.2 3.8 25 52-76 18-42 (213)
418 3kta_A Chromosome segregation 95.7 0.0077 2.6E-07 48.2 3.7 24 56-79 28-51 (182)
419 2xxa_A Signal recognition part 95.6 0.0088 3E-07 55.3 4.4 27 52-78 98-124 (433)
420 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0038 1.3E-07 55.6 1.8 26 54-79 171-196 (330)
421 1r6b_X CLPA protein; AAA+, N-t 95.6 0.0083 2.9E-07 59.3 4.4 26 53-78 206-231 (758)
422 4gzl_A RAS-related C3 botulinu 95.6 0.0081 2.8E-07 49.0 3.7 26 51-76 27-52 (204)
423 2cxx_A Probable GTP-binding pr 95.6 0.0068 2.3E-07 48.3 3.1 22 55-76 2-23 (190)
424 3q3j_B RHO-related GTP-binding 95.6 0.0086 2.9E-07 49.4 3.8 26 52-77 25-50 (214)
425 3dz8_A RAS-related protein RAB 95.6 0.0087 3E-07 48.1 3.7 26 53-78 22-47 (191)
426 1gwn_A RHO-related GTP-binding 95.6 0.0078 2.7E-07 49.3 3.5 26 52-77 26-51 (205)
427 3lda_A DNA repair protein RAD5 95.6 0.007 2.4E-07 55.4 3.4 24 53-76 177-200 (400)
428 1tq4_A IIGP1, interferon-induc 95.5 0.0076 2.6E-07 55.3 3.6 25 53-77 68-92 (413)
429 1x3s_A RAS-related protein RAB 95.5 0.0071 2.4E-07 48.4 3.1 25 53-77 14-38 (195)
430 1j8m_F SRP54, signal recogniti 95.5 0.0072 2.5E-07 53.0 3.4 26 53-78 97-122 (297)
431 2zts_A Putative uncharacterize 95.5 0.0081 2.8E-07 50.3 3.6 24 53-76 29-52 (251)
432 2zr9_A Protein RECA, recombina 95.5 0.0086 2.9E-07 53.8 3.8 33 53-85 60-97 (349)
433 1qvr_A CLPB protein; coiled co 95.5 0.0088 3E-07 60.0 4.3 24 55-78 589-612 (854)
434 3k1j_A LON protease, ATP-depen 95.5 0.0065 2.2E-07 58.6 3.2 26 55-80 61-86 (604)
435 2rcn_A Probable GTPase ENGC; Y 95.5 0.0079 2.7E-07 54.1 3.5 24 54-77 215-238 (358)
436 2fna_A Conserved hypothetical 95.5 0.011 3.7E-07 52.1 4.4 30 56-85 32-63 (357)
437 2ew1_A RAS-related protein RAB 95.5 0.0083 2.8E-07 49.1 3.4 25 53-77 25-49 (201)
438 1v5w_A DMC1, meiotic recombina 95.5 0.0098 3.3E-07 53.2 4.0 26 52-77 120-145 (343)
439 2o52_A RAS-related protein RAB 95.5 0.0074 2.5E-07 49.1 2.9 25 52-76 23-47 (200)
440 2f7s_A C25KG, RAS-related prot 95.4 0.0084 2.9E-07 49.2 3.3 25 52-76 23-47 (217)
441 1w5s_A Origin recognition comp 95.4 0.0087 3E-07 54.1 3.6 26 53-78 49-76 (412)
442 2yv5_A YJEQ protein; hydrolase 95.4 0.0092 3.1E-07 52.4 3.6 24 54-78 165-188 (302)
443 2fv8_A H6, RHO-related GTP-bin 95.4 0.0069 2.4E-07 49.5 2.7 24 53-76 24-47 (207)
444 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0097 3.3E-07 48.4 3.5 24 53-76 7-30 (206)
445 2ffh_A Protein (FFH); SRP54, s 95.4 0.011 3.8E-07 54.5 4.2 26 53-78 97-122 (425)
446 2oap_1 GSPE-2, type II secreti 95.4 0.0064 2.2E-07 57.4 2.6 26 53-78 259-284 (511)
447 2hup_A RAS-related protein RAB 95.4 0.0091 3.1E-07 48.6 3.2 25 52-76 27-51 (201)
448 2qag_B Septin-6, protein NEDD5 95.4 0.0084 2.9E-07 55.2 3.3 21 57-77 45-65 (427)
449 2r8r_A Sensor protein; KDPD, P 95.4 0.015 5.1E-07 48.9 4.5 33 54-86 6-43 (228)
450 1zbd_A Rabphilin-3A; G protein 95.4 0.011 3.6E-07 48.0 3.5 24 53-76 7-30 (203)
451 2x77_A ADP-ribosylation factor 95.4 0.0077 2.6E-07 48.2 2.7 24 52-75 20-43 (189)
452 3a1s_A Iron(II) transport prot 95.3 0.0087 3E-07 51.2 3.0 24 53-76 4-27 (258)
453 2j9r_A Thymidine kinase; TK1, 95.3 0.017 5.9E-07 48.1 4.7 27 52-78 26-52 (214)
454 1u0l_A Probable GTPase ENGC; p 95.3 0.0086 3E-07 52.5 2.9 23 54-76 169-191 (301)
455 4dhe_A Probable GTP-binding pr 95.2 0.0061 2.1E-07 50.2 1.8 26 52-77 27-52 (223)
456 1u94_A RECA protein, recombina 95.2 0.011 3.8E-07 53.1 3.6 33 53-85 62-99 (356)
457 2z43_A DNA repair and recombin 95.2 0.011 3.6E-07 52.4 3.4 26 53-78 106-131 (324)
458 3upu_A ATP-dependent DNA helic 95.2 0.012 4E-07 54.7 3.8 23 56-78 47-69 (459)
459 2j0v_A RAC-like GTP-binding pr 95.2 0.014 4.8E-07 47.6 3.9 25 53-77 8-32 (212)
460 2atx_A Small GTP binding prote 95.2 0.0092 3.1E-07 48.0 2.7 25 53-77 17-41 (194)
461 1ega_A Protein (GTP-binding pr 95.2 0.0093 3.2E-07 52.3 2.9 24 53-76 7-30 (301)
462 3gj0_A GTP-binding nuclear pro 95.2 0.014 4.7E-07 48.1 3.8 28 51-78 12-40 (221)
463 2cjw_A GTP-binding protein GEM 95.1 0.014 4.7E-07 47.2 3.6 25 53-77 5-29 (192)
464 3b1v_A Ferrous iron uptake tra 95.1 0.013 4.6E-07 50.6 3.6 24 54-77 3-26 (272)
465 2fu5_C RAS-related protein RAB 95.1 0.0065 2.2E-07 48.2 1.5 24 53-76 7-30 (183)
466 2obl_A ESCN; ATPase, hydrolase 95.1 0.014 4.9E-07 52.3 3.8 27 53-79 70-96 (347)
467 3bh0_A DNAB-like replicative h 95.1 0.016 5.6E-07 51.0 4.2 27 52-78 66-92 (315)
468 2i1q_A DNA repair and recombin 95.1 0.012 4.1E-07 51.9 3.3 25 53-77 97-121 (322)
469 2qnr_A Septin-2, protein NEDD5 95.1 0.011 3.9E-07 51.7 3.1 24 53-76 17-40 (301)
470 3j16_B RLI1P; ribosome recycli 95.1 0.016 5.3E-07 56.0 4.3 29 50-78 99-127 (608)
471 3e1s_A Exodeoxyribonuclease V, 95.1 0.014 4.9E-07 55.9 4.0 25 54-78 204-228 (574)
472 1yqt_A RNAse L inhibitor; ATP- 95.1 0.013 4.5E-07 55.6 3.7 27 52-78 45-71 (538)
473 2dpy_A FLII, flagellum-specifi 95.0 0.015 5.1E-07 53.8 3.8 28 52-79 155-182 (438)
474 3euj_A Chromosome partition pr 95.0 0.013 4.4E-07 54.9 3.3 24 55-78 30-53 (483)
475 3o47_A ADP-ribosylation factor 95.0 0.016 5.6E-07 51.4 3.9 26 51-76 162-187 (329)
476 3b5x_A Lipid A export ATP-bind 95.0 0.014 4.7E-07 56.0 3.6 26 53-78 368-393 (582)
477 3i8s_A Ferrous iron transport 94.9 0.016 5.6E-07 49.9 3.6 25 53-77 2-26 (274)
478 3b60_A Lipid A export ATP-bind 94.9 0.012 4.2E-07 56.3 3.1 26 53-78 368-393 (582)
479 3cpj_B GTP-binding protein YPT 94.9 0.016 5.4E-07 47.9 3.4 25 53-77 12-36 (223)
480 1ko7_A HPR kinase/phosphatase; 94.9 0.016 5.5E-07 51.1 3.5 32 53-85 143-174 (314)
481 3f9v_A Minichromosome maintena 94.9 0.0061 2.1E-07 58.7 0.8 28 56-83 329-356 (595)
482 3c5h_A Glucocorticoid receptor 94.9 0.023 8E-07 48.3 4.4 28 49-76 14-50 (255)
483 2r6a_A DNAB helicase, replicat 94.8 0.02 6.9E-07 53.1 4.2 27 52-78 201-227 (454)
484 1tf7_A KAIC; homohexamer, hexa 94.8 0.015 5.3E-07 54.9 3.4 23 53-75 38-62 (525)
485 1f2t_A RAD50 ABC-ATPase; DNA d 94.8 0.022 7.5E-07 44.4 3.7 24 54-77 23-46 (149)
486 3iby_A Ferrous iron transport 94.7 0.017 5.8E-07 49.4 3.2 23 55-77 2-24 (256)
487 1ni3_A YCHF GTPase, YCHF GTP-b 94.7 0.019 6.4E-07 52.4 3.6 25 52-76 18-42 (392)
488 1mky_A Probable GTP-binding pr 94.7 0.023 8E-07 52.4 4.2 26 52-77 178-203 (439)
489 3ozx_A RNAse L inhibitor; ATP 94.6 0.016 5.5E-07 55.1 3.1 26 53-78 293-318 (538)
490 3io5_A Recombination and repai 94.6 0.022 7.5E-07 50.4 3.6 23 56-78 30-52 (333)
491 3l0i_B RAS-related protein RAB 94.6 0.0042 1.4E-07 50.4 -0.9 24 52-75 31-54 (199)
492 2qag_C Septin-7; cell cycle, c 94.6 0.017 6E-07 53.0 3.1 25 53-77 30-54 (418)
493 1t9h_A YLOQ, probable GTPase E 94.6 0.0073 2.5E-07 53.3 0.5 24 53-76 172-195 (307)
494 2aka_B Dynamin-1; fusion prote 94.6 0.029 9.9E-07 48.4 4.3 26 52-77 24-49 (299)
495 2yl4_A ATP-binding cassette SU 94.6 0.013 4.6E-07 56.2 2.3 26 53-78 369-394 (595)
496 1yqt_A RNAse L inhibitor; ATP- 94.6 0.021 7E-07 54.3 3.6 26 53-78 311-336 (538)
497 4djt_A GTP-binding nuclear pro 94.5 0.0088 3E-07 49.1 0.9 24 52-75 9-32 (218)
498 1xp8_A RECA protein, recombina 94.5 0.022 7.7E-07 51.4 3.5 34 53-86 73-111 (366)
499 3bk7_A ABC transporter ATP-bin 94.5 0.022 7.5E-07 54.9 3.6 26 53-78 381-406 (607)
500 2yc2_C IFT27, small RAB-relate 94.5 0.0076 2.6E-07 48.8 0.3 24 53-76 19-42 (208)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=6.3e-44 Score=302.17 Aligned_cols=199 Identities=39% Similarity=0.670 Sum_probs=185.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|||||||+|+|+.|+++||++|||++|++|+.+..++++|..++.++.+|.++|++++..++.+++...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~----- 75 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH----- 75 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS-----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC-----
Confidence 689999999999999999999999999999999999999999999999999999999999999999999887653
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+|||||||++..|++.|+.. ..++.||+|++|.+++++|+.+|++|+.||+.||.. +
T Consensus 76 ~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~-----------------~ 138 (206)
T 3sr0_A 76 GNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVK-----------------Y 138 (206)
T ss_dssp SCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT-----------------T
T ss_pred CceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeee-----------------c
Confidence 689999999999999998754 258999999999999999999999999999999995 4
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
+|| .|+.+|.+|.||+++.+++|++.|++++.|+.+||++.+.++.||+++++++|+++|.++|.+
T Consensus 139 ~pp-~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 139 NPP-PPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp BCC-CTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred cCC-CCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 444 488999999999999999999999999999999999999999999999999999999999974
No 2
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=2.1e-42 Score=295.56 Aligned_cols=205 Identities=31% Similarity=0.594 Sum_probs=174.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
..|++.|+|+|||||||+|+.|+++||+++|++++++|+.+..++++|+.+++++.+|..+|++++..++.+++...++.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~ 86 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCA 86 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGT
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
.||||||||++..|++.|+... .+|.||+|++|++++++|+.+|++|+.||+.||+. |+|
T Consensus 87 --~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~-----------------~~p 147 (230)
T 3gmt_A 87 --NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVK-----------------FNP 147 (230)
T ss_dssp --TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETT-----------------TBC
T ss_pred --CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCccccc-----------------CCC
Confidence 6999999999999999998754 58999999999999999999999999999999995 455
Q ss_pred Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-----------CcEEEEeCCCCcccHHHHHHHHh
Q 023080 212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-----------GKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-----------~~~~~id~~~~~eev~~~I~~~l 274 (287)
|+ .|+++|++|.||+++.+++|++.|++++.|+.+||.+. +.++.||+++++++|+++|.++|
T Consensus 148 p~~~~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l 227 (230)
T 3gmt_A 148 PKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQ 227 (230)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------------
T ss_pred CCccCcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHH
Confidence 53 57899999999999999999999999999999999973 78999999999999999999988
Q ss_pred cc
Q 023080 275 NL 276 (287)
Q Consensus 275 ~~ 276 (287)
..
T Consensus 228 ~~ 229 (230)
T 3gmt_A 228 VS 229 (230)
T ss_dssp --
T ss_pred hc
Confidence 64
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=9.3e-39 Score=271.95 Aligned_cols=187 Identities=29% Similarity=0.511 Sum_probs=169.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
..++.+|+|+|||||||||+|+.|+++||++||+++|++|+.+..++++|..+++++.+|..+|++++..++.+++....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
+. ..||||||||++..|++.|+.. ..++.+|+|++|.+++++|+.+|+.+
T Consensus 106 ~~-~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~---------------------------- 156 (217)
T 3umf_A 106 DK-NCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAET---------------------------- 156 (217)
T ss_dssp TT-CSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-------------------------------
T ss_pred cc-ccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccccc----------------------------
Confidence 44 5799999999999999999875 46899999999999999999998632
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.+|.||+++.+++|++.|+++..|+.+||.+.+.++.||+++++++||++|.++|+.
T Consensus 157 ----------~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 157 ----------SNRVDDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred ----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999999999875
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=7e-37 Score=265.58 Aligned_cols=210 Identities=33% Similarity=0.589 Sum_probs=189.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
+.+|++|+|+|+|||||||+|++|++++|++++++++++++.+..++..+..+.+++.+|..++++.+..++...+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 34788999999999999999999999999999999999999988899999999999999999999999999998887755
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCcc
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSIS 205 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~ 205 (287)
+ +.+||+||||++..|+..+... ..||.+|+|++|++++++|+.+|+.|+.||+.||.. +
T Consensus 106 ~--~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~-------------~ 170 (243)
T 3tlx_A 106 C--KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKI-------------F 170 (243)
T ss_dssp G--SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-------------T
T ss_pred c--cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccc-------------c
Confidence 4 3799999999999999887764 358999999999999999999999999999999995 3
Q ss_pred CCCCCCC--cccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 206 MAPLLPP--AHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 206 ~~~~~~p--~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
+||-.+. ..|+.+|++|.+|+++.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|.
T Consensus 171 ~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 171 NPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 3322221 357889999999999999999999999999999999999999999999999999999998875
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=100.00 E-value=2e-35 Score=251.25 Aligned_cols=203 Identities=38% Similarity=0.718 Sum_probs=185.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+.+++..|..++++.+..++...+..... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC--E 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc--c
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988877544 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+||+||||.+..++..+.... .+|.+|+|++|++++++|+.+|+.|+.||+.||.. +
T Consensus 79 ~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-----------------~ 141 (216)
T 3dl0_A 79 RGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLV-----------------F 141 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETT-----------------T
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccc-----------------c
Confidence 7999999999999988877643 38999999999999999999999999999999995 3
Q ss_pred CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.||+ .|+.+|.+|.+++.+.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus 142 ~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 142 NPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp BCCSSTTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred CCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 4442 577899999999999999999999999999999999988899999999999999999999874
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=100.00 E-value=6.7e-35 Score=247.89 Aligned_cols=203 Identities=34% Similarity=0.663 Sum_probs=185.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+.+++..|..++++++..++...+..... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~--~ 78 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC--Q 78 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG--T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC--C
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988877544 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
.+||+||+|.+..++..+.... .+|.+|+|++|++++++|+.+|+.||.||+.||+. +
T Consensus 79 ~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~-----------------~ 141 (216)
T 3fb4_A 79 KGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTI-----------------F 141 (216)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETT-----------------T
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccc-----------------c
Confidence 7999999999999988877643 38999999999999999999999999999999995 3
Q ss_pred CCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
+||+ .|+.++..|.+++.+.+++|++.|++...++.+||.+.+.++.||+++++++++++|.++|..
T Consensus 142 ~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 142 NPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp BCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 4442 577899999999999999999999999999999999988899999999999999999998863
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.3e-34 Score=242.67 Aligned_cols=203 Identities=30% Similarity=0.558 Sum_probs=179.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
++++|+|+|+|||||||+|+.|++++|++++++|+++++....+++.+..+.+++.+|..++++.+..++..++....+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~- 82 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC- 82 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-
Confidence 5678999999999999999999999999999999999998888889999999999999999999999999888876433
Q ss_pred CCccEEEeCCCCCHHHHHHHHH----h-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCC
Q 023080 133 GESGFILDGFPRTVKQAEILEE----V-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~----~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
+.+||+||||++..|++.+.. . ..||.+|||++|++++++|+..|+.++.||+.||+.
T Consensus 83 -~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~---------------- 145 (217)
T 3be4_A 83 -VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVK---------------- 145 (217)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT----------------
T ss_pred -CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccc----------------
Confidence 478999999999888877763 2 258999999999999999999999999999999995
Q ss_pred CCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 208 PLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 208 ~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+.||+ .|..+|..+.+|..+.+++|+..|++...++.++|.+.+.++.||+++++++|+++|.+.|
T Consensus 146 -~~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 146 -YNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp -TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred -cCCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 34443 3567899999999999999999999999999999988778999999999999999998764
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=100.00 E-value=6.2e-33 Score=236.74 Aligned_cols=207 Identities=32% Similarity=0.636 Sum_probs=179.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+|+.|++++|++++++|+++++....+++.+..+.+++..|..++++.+..++..++.....
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence 35689999999999999999999999999999999999998888889999999999999999999999999888863222
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 206 (287)
. +.+||+||||++..++..+... ..||++|+|+++++++++|+.+|+.++.||..||+.
T Consensus 82 ~-~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~--------------- 145 (220)
T 1aky_A 82 C-KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKI--------------- 145 (220)
T ss_dssp G-GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETT---------------
T ss_pred c-CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccc---------------
Confidence 2 4689999999999887766543 358999999999999999999999999999999984
Q ss_pred CCCCCCcc-----c-ccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 207 APLLPPAH-----C-MSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 207 ~~~~~p~~-----~-~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
+.||.. | ..+|..|.+++.+.+++|++.|.+...++.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus 146 --~~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 146 --FNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGK 219 (220)
T ss_dssp --TBCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHTC
T ss_pred --cCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 344432 2 3578888889999999999999999999999998777899999999999999999998853
No 9
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=100.00 E-value=6.7e-33 Score=238.78 Aligned_cols=208 Identities=36% Similarity=0.638 Sum_probs=181.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
.+.++++|+|+|+|||||||+|+.|+++|++.++++|+++++.+..++..+..+++++..|..++++.+..++..++...
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~ 91 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETP 91 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSG
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 34467899999999999999999999999999999999999988888889999999999999999999999998888765
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCc
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSI 204 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~ 204 (287)
.. +.+||+||||++..|++.+..+ ..++++|+|+++++++++|+..|+.++.||+.||..
T Consensus 92 ~~--~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~------------- 156 (233)
T 1ak2_A 92 PC--KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEE------------- 156 (233)
T ss_dssp GG--TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTT-------------
T ss_pred cc--cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccc-------------
Confidence 43 3689999999999888766543 248999999999999999999999999999999984
Q ss_pred cCCCCCCCc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 205 SMAPLLPPA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 205 ~~~~~~~p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
|.||. .|+.+|..|.++..+.+++|+..|.+...++.++|.+.+.++.||+++++++|+++|.+.|..
T Consensus 157 ----~~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 157 ----FNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp ----TBCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ----cCCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 33332 235678888889999999999999999999999998877789999999999999999998864
No 10
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=100.00 E-value=1.1e-32 Score=234.25 Aligned_cols=201 Identities=33% Similarity=0.638 Sum_probs=179.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|+|||||||+++.|++++|++++++|+++++.+..+++.+..+.+++..|..++++.+..++...+....+ .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~--~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC--R 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG--G
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc--C
Confidence 46999999999999999999999999999999999998888889999999999999999999999999888876543 2
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080 135 SGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA 213 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (287)
.+||+||||++..++..|... ..||++|+|+++++++++|+.+|+.++.||..||+. +.||.
T Consensus 79 ~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~-----------------~~pp~ 141 (214)
T 1e4v_A 79 NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVK-----------------FNPPK 141 (214)
T ss_dssp GCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-----------------TBCCS
T ss_pred CCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCccccc-----------------CCCCC
Confidence 689999999999888877664 358999999999999999999999999999999984 33442
Q ss_pred ------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhc-----CcEEEEeCCCCcccHHHHHHHHh
Q 023080 214 ------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNR-----GKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 214 ------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~-----~~~~~id~~~~~eev~~~I~~~l 274 (287)
.|+.+|..|.+++.+.+++|++.|.+...++.++|.+. +.++.||+++++++|+++|.+.|
T Consensus 142 ~~~~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 142 VEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp STTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999865 57899999999999999999877
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=100.00 E-value=2.3e-32 Score=234.08 Aligned_cols=200 Identities=30% Similarity=0.517 Sum_probs=176.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
|+|+|+|+|||||||+++.|++++|++++++|+++++.+..++..+..+++++.+|..++++.+..++...+.... +
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~---g 77 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG---K 77 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC---T
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc---C
Confidence 5799999999999999999999999999999999999777778899999999999999999999999988887632 3
Q ss_pred ccEEEeCCCCCHHHHHHHHHh-----cCccEEEEEecCHHHHHHHHhCCCcccc-CCCccccccccccCCCCCCCccCCC
Q 023080 135 SGFILDGFPRTVKQAEILEEV-----MDIDLVVNLKLCEDVLLEKCLGRRMCSQ-CGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 135 ~g~Ildg~p~~~~~~~~l~~~-----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~-~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
.+||+||||++..++..+... ..||++|+|++|++++++|+.+|+.++. ||..||+.
T Consensus 78 ~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~----------------- 140 (223)
T 2xb4_A 78 DGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIF----------------- 140 (223)
T ss_dssp TCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTT-----------------
T ss_pred CeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccc-----------------
Confidence 689999999998888887653 2589999999999999999999988877 99999985
Q ss_pred CCCCc-------ccccccccCCCCcHH-HHHHHHHHHHhhchHHHH---HHHh-----cCcEEEEeCCCCcccHHHHHHH
Q 023080 209 LLPPA-------HCMSKLITRADDTEE-VVKERLRVYNEKSQPVEE---FYRN-----RGKLLEFDLPGGIPESWPKLLE 272 (287)
Q Consensus 209 ~~~p~-------~~~~~L~~r~~d~~~-~i~~rl~~y~~~~~~~~~---~y~~-----~~~~~~id~~~~~eev~~~I~~ 272 (287)
++||+ .|+.+|.+|.+|+.+ .+++|+..|++...|+.+ +|.+ .+.++.||+++++++|+++|.+
T Consensus 141 ~~~p~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~ 220 (223)
T 2xb4_A 141 IDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLA 220 (223)
T ss_dssp CGGGCCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHH
T ss_pred cCCCccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHH
Confidence 33432 356799999988888 999999999999999999 9987 5678999999999999999998
Q ss_pred Hh
Q 023080 273 AL 274 (287)
Q Consensus 273 ~l 274 (287)
.|
T Consensus 221 ~l 222 (223)
T 2xb4_A 221 QL 222 (223)
T ss_dssp HH
T ss_pred Hh
Confidence 77
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=100.00 E-value=2.1e-31 Score=228.33 Aligned_cols=206 Identities=32% Similarity=0.588 Sum_probs=180.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+++.|++++|+.++++|++++.....++..+..+.+++..|..++++....++.+++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-- 82 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-- 82 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC--
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc--
Confidence 356889999999999999999999999999999999999988888889999999999999999988888887777653
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
. +.+||+||+|.+..|...+.....++.+|+|+++++++++|+..|+.++.||+.||.. +.|
T Consensus 83 ~-~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~-----------------~~p 144 (227)
T 1zd8_A 83 T-QYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIE-----------------FNP 144 (227)
T ss_dssp T-TSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETT-----------------TBC
T ss_pred c-CCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccc-----------------cCC
Confidence 2 4689999999998888878777779999999999999999999998888899999874 334
Q ss_pred Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
|. .|..+|.+|.++..+.+++|+..|.+...++.++|.+.+.++.||++ ++++++++|.++|....
T Consensus 145 p~~~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~ 216 (227)
T 1zd8_A 145 PKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKV 216 (227)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTS
T ss_pred CCcccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhc
Confidence 42 35678888888899999999999999999999999877889999999 99999999999997643
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.97 E-value=6.3e-31 Score=224.56 Aligned_cols=206 Identities=31% Similarity=0.521 Sum_probs=177.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+++.|++++++.++++|++++.....++..|..+.+++.+|..++++.+..++..++....+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 36678999999999999999999999999999999999998888888999999999999999999888888777665332
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL 210 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
. ..+||+||||++..++..+...+ .|+++|||+++++++++|+..|..++.||+.||.. +.
T Consensus 83 ~-~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~-----------------~~ 144 (222)
T 1zak_A 83 Q-ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLK-----------------YS 144 (222)
T ss_dssp H-HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESS-----------------SS
T ss_pred c-CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccc-----------------cC
Confidence 2 35899999999998888777643 58999999999999999999999999999999984 44
Q ss_pred CCc--ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 211 PPA--HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 211 ~p~--~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
||. ....+|..+.++..+.+++|++.|+....++.++|.. .++.||+++++++++++|.+.|...
T Consensus 145 pp~~~~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 145 PPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp CCCSSGGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 553 3446888888888999999999999988888888854 4788999999999999999998754
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.95 E-value=1.2e-26 Score=193.46 Aligned_cols=185 Identities=31% Similarity=0.563 Sum_probs=156.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+|+.|++++|++++++|++++.....++..+..+.+++..|..++.+....++...+.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 36678999999999999999999999999999999999998877888899999999889999998888888777665433
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL 210 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
. +.++|+||+|.+..+.+.+... ..++.+|||++|++++.+|+..|....
T Consensus 87 ~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~---------------------------- 137 (196)
T 2c95_A 87 T-SKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETS---------------------------- 137 (196)
T ss_dssp T-CSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSS----------------------------
T ss_pred c-CCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcC----------------------------
Confidence 3 5789999999998888776653 468999999999999999998774211
Q ss_pred CCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 211 PPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 211 ~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
.+.++..+.+.+|+..|.....++.++|...+.++.||+++++++++++|.+.+.
T Consensus 138 ----------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~ 192 (196)
T 2c95_A 138 ----------GRVDDNEETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLD 192 (196)
T ss_dssp ----------SCGGGSHHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHH
Confidence 1234567888899999999999988889877778889999999999999998885
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.95 E-value=8.6e-27 Score=195.81 Aligned_cols=181 Identities=39% Similarity=0.743 Sum_probs=153.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
..+.+|++|+|+|+|||||||+|+.|++++|++++++|+++++.+..++..+..+.+++..|..++++....++.+++..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 94 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN 94 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Confidence 34457789999999999999999999999999999999999998888888899999999999999999888888777665
Q ss_pred cccCCCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080 129 GQAGGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS 203 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 203 (287)
... +.+||+||+|.+..+.+.+.... .|+.+|+|++|++++++|+.+|.
T Consensus 95 ~~~--~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~------------------------ 148 (201)
T 2cdn_A 95 PDA--ANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG------------------------ 148 (201)
T ss_dssp GGG--TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC------------------------
T ss_pred ccC--CCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC------------------------
Confidence 332 46899999999988877665432 38899999999999999998862
Q ss_pred ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
+.+++.+.+++|++.|.....++.++| ...++.||+++++++++++|.+.|.
T Consensus 149 ------------------r~~~~~e~~~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 149 ------------------RADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp ------------------CTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred ------------------CCCCCHHHHHHHHHHHHHhhHHHHHHh--cCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 234567889999999999888888888 3457889999999999999998875
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.95 E-value=2e-26 Score=193.66 Aligned_cols=187 Identities=28% Similarity=0.526 Sum_probs=155.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-cCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
+.++++|+|+|+|||||||+++.|++++|++++++|++++.... .++..+..+..++.+|...+++....++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999999999998654 56778888999998899888888877777666543
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
...+..+||+||+|++..++..++... .+|++|||++|++++++|+.+|....
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~-------------------------- 145 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTS-------------------------- 145 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHH--------------------------
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccC--------------------------
Confidence 222135899999999999888777643 58999999999999999998874210
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
.+.+++.+.+++|+..|.+...++.++|...+.++.||+++++++++++|.+.|.
T Consensus 146 ------------~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 146 ------------GRSDDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp ------------CCTTCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred ------------CCCCCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 2335678889999999999999999989877888889999999999999998875
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=192.12 Aligned_cols=185 Identities=31% Similarity=0.546 Sum_probs=154.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
++++|+|+|+|||||||+|+.|++++|+.++++|++++.....+++.+..+.+++..|..++++.+..++...+......
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 45689999999999999999999999999999999999887777888999999999999999988888887766554322
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
+.+||+||+|.+..++..+.... .|+++|||++|++++.+|+.+|....
T Consensus 91 -~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~----------------------------- 140 (199)
T 2bwj_A 91 -TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSS----------------------------- 140 (199)
T ss_dssp -CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCC-----------------------------
T ss_pred -CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCC-----------------------------
Confidence 57899999999988877776533 68999999999999999999875210
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.+.+++.+.+.+|+..|.....++.++|...+.++.||+++++++++++|.+.+..
T Consensus 141 ---------~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 141 ---------LPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp ---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 12234567888899999998888888898777778899999999999999988753
No 18
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.95 E-value=9.1e-26 Score=187.31 Aligned_cols=183 Identities=25% Similarity=0.437 Sum_probs=156.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
.+++|+|+|+|||||||+++.|++++|++++++|++++.....++..+..+.+++..|...+++....++...+... .
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~ 82 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--Q 82 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--T
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--C
Confidence 45789999999999999999999999999999999999887778889999999999999998888888888777654 2
Q ss_pred CCccEEEeCCCCCHHHHHHHHHh-c---CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEV-M---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~-~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
+.++|+||+|.+..+...+... . .++++|+|++|++++++|+.+|...
T Consensus 83 -~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~--------------------------- 134 (194)
T 1qf9_A 83 -GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGES--------------------------- 134 (194)
T ss_dssp -TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTT---------------------------
T ss_pred -CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhcccc---------------------------
Confidence 5789999999998887776543 2 4889999999999999999887421
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
..+.++..+.+.+|++.|.+...++.++|...+.++.||+++++++++++|.+.+..
T Consensus 135 -----------~~r~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 135 -----------SGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp -----------SCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred -----------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 124466788899999999988889888998777778899999999999999998863
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.94 E-value=4.3e-26 Score=188.79 Aligned_cols=179 Identities=39% Similarity=0.643 Sum_probs=149.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+++.|++++|++++++|++++..+..+++.+..+.+++.+|...+++.....+...+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~---- 77 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA---- 77 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----
Confidence 3567899999999999999999999999999999999998877788889999999999999998887777665442
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhc-----CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVM-----DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISM 206 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~-----~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~ 206 (287)
.++|+||++.+..+...+.... .|+.+|+|++|++++++|+.+|...
T Consensus 78 ---~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~------------------------- 129 (186)
T 3cm0_A 78 ---ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAEL------------------------- 129 (186)
T ss_dssp ---SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHH-------------------------
T ss_pred ---CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcccc-------------------------
Confidence 2599999999988776554321 3789999999999999999877310
Q ss_pred CCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhc
Q 023080 207 APLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALN 275 (287)
Q Consensus 207 ~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 275 (287)
..+.+++.+.+++|+..|.....++.++|...+.++.||+++++++++++|.+.+.
T Consensus 130 -------------~~r~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 130 -------------EGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAALG 185 (186)
T ss_dssp -------------HTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHhc
Confidence 02345678889999999998888888899877778899999999999999998774
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.94 E-value=1.5e-25 Score=186.39 Aligned_cols=186 Identities=25% Similarity=0.549 Sum_probs=151.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH-cCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc-
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA-SSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ- 130 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~-~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~- 130 (287)
+|++|+|+|+|||||||+|+.|++++|++++++|++++.... ..+..+..+.+++..|...+++....++...+....
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 467899999999999999999999999999999999988764 355678888888888988888877777665544321
Q ss_pred -cCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCcc
Q 023080 131 -AGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSIS 205 (287)
Q Consensus 131 -~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~ 205 (287)
...+.+||+||+|.+..+...+... ..++++|||++|++++++|+.+|...
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~------------------------ 137 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKS------------------------ 137 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHT------------------------
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHccccc------------------------
Confidence 1114689999999998877655442 24789999999999999999877411
Q ss_pred CCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 206 MAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 206 ~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
..|.+++.+.++++++.|.+...++.++|.+.+.++.||+++++++++++|.+.|..
T Consensus 138 --------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 138 --------------SGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp --------------SSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred --------------CCCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 134566788899999999999999999998877888999999999999999998853
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.92 E-value=1.4e-23 Score=181.87 Aligned_cols=206 Identities=31% Similarity=0.569 Sum_probs=167.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.+|.+|+|+|++||||||+++.|+++||+.+++.+++++.........+..+..++.++...++..+...+...+...
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-- 102 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-- 102 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--
Confidence 356799999999999999999999999999999999998766555567777888888888888888777777666543
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
. +.+|++||+|.+..+++.+.....++++|+|+++++++++|+..|..+..+|+.+... +.+
T Consensus 103 ~-~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~-----------------~~~ 164 (246)
T 2bbw_A 103 R-GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLD-----------------FNP 164 (246)
T ss_dssp T-TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETT-----------------TSC
T ss_pred C-CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccc-----------------cCC
Confidence 1 3589999999887766666655668999999999999999999998887777654331 122
Q ss_pred Cc------ccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 212 PA------HCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 212 p~------~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
|+ .|.+++..+.++..+.+.+++..|.+...++.++|.+.+.++.||++++ ++++++|.++|....
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~ 236 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKI 236 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTS
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhC
Confidence 21 2447777777778899999999999998999999998888999999988 999999999997643
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.81 E-value=2.2e-18 Score=139.97 Aligned_cols=170 Identities=17% Similarity=0.194 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCC----chHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSG----SLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~----~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
++|+|+|+|||||||+++.| +.+|+.+++++++++......+ ........+... .+...+...+...+...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~- 76 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGTS- 76 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCSC-
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHhc-
Confidence 58999999999999999999 9999999999999998765432 223333333332 11233444555555321
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
. +..+|+||+ .+..+...+.... .++.+|||++|++++.+|+..|...
T Consensus 77 -~-~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~---------------------------- 125 (179)
T 3lw7_A 77 -N-HDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS---------------------------- 125 (179)
T ss_dssp -C-CSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC------------------------------
T ss_pred -C-CCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC----------------------------
Confidence 1 478999999 8888888887754 5789999999999999999988411
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
....+.+.+.+|+..... .+...++...+ +.||++++++++.++|.+.+..
T Consensus 126 ------------~~~~~~~~~~~r~~~~~~--~~~~~~~~~ad--~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 126 ------------DDSKEISELIRRDREELK--LGIGEVIAMAD--YIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp --------------CCCHHHHHHHHHHHHH--HTHHHHHHTCS--EEEECCSCHHHHHHHHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHhhhc--cChHhHHHhCC--EEEECCCCHHHHHHHHHHHHHH
Confidence 012345666666543222 12333333333 4577788999999999988863
No 23
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.75 E-value=5.4e-17 Score=134.38 Aligned_cols=161 Identities=21% Similarity=0.295 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH-----------H
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF-----------N 120 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~-----------~ 120 (287)
++|+|+|+|||||||+++.|++++ |++++++++ ...+..+..+.+++..|...+..... .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 999999853 23344566777777777555442221 1
Q ss_pred HHHHHHHhcccCCCccEEEe----------CCCCCHH--HHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080 121 LLSKRLEAGQAGGESGFILD----------GFPRTVK--QAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC 184 (287)
Q Consensus 121 ~l~~~l~~~~~~~~~g~Ild----------g~p~~~~--~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~ 184 (287)
.+...+.. +..+|+| |++.... +...+... ..||++|||++|++++++|+.+|.
T Consensus 75 ~i~~~l~~-----~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~----- 144 (195)
T 2pbr_A 75 KIIPDLKR-----DKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN----- 144 (195)
T ss_dssp THHHHHHT-----TCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT-----
T ss_pred HHHHHHhC-----CCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC-----
Confidence 11122222 3567777 6655432 33333221 258999999999999999998642
Q ss_pred CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080 185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP 264 (287)
Q Consensus 185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e 264 (287)
+.+ ..+..+.....|.+.. .+| +.++.||++++++
T Consensus 145 -------------------------------------~~~-~~~~~~~~~~~~~~~~----~~~---~~~~~Id~~~~~~ 179 (195)
T 2pbr_A 145 -------------------------------------RFE-NKEFLEKVRKGFLELA----KEE---ENVVVIDASGEEE 179 (195)
T ss_dssp -------------------------------------CCC-CHHHHHHHHHHHHHHH----HHS---TTEEEEETTSCHH
T ss_pred -------------------------------------ccc-hHHHHHHHHHHHHHHH----hhC---CCEEEEECCCCHH
Confidence 112 3343333334454322 223 3578899999999
Q ss_pred cHHHHHHHHhcc
Q 023080 265 ESWPKLLEALNL 276 (287)
Q Consensus 265 ev~~~I~~~l~~ 276 (287)
+++++|.+.+..
T Consensus 180 ~~~~~i~~~l~~ 191 (195)
T 2pbr_A 180 EVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=2.9e-17 Score=137.48 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=105.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhccc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
++.+|+|+|+|||||||+++.|++.+|++++++|+++.... +.. +.+++.. |..........++.. +. .
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~----i~~~~~~~~~~~~~~~e~~~l~~-l~---~ 93 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKT----VGELFTERGEAGFRELERNMLHE-VA---E 93 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSC----HHHHHHHHHHHHHHHHHHHHHHH-HT---T
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCc----HHHHHHhcChHHHHHHHHHHHHH-Hh---h
Confidence 45689999999999999999999999999999999887632 122 2233321 111111112222222 11 1
Q ss_pred CCCccEEEe---CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHh-CCCccccCCCccccccccccCCCCCCCccCC
Q 023080 132 GGESGFILD---GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL-GRRMCSQCGGNFNVANINVKGGNGNPSISMA 207 (287)
Q Consensus 132 ~~~~g~Ild---g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~ 207 (287)
...+|++ |.+........+.. ++.+|||++|.+++++|+. .|+..|
T Consensus 94 --~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp------------------------- 143 (199)
T 3vaa_A 94 --FENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVHPDVLFRRLRIAKQQRP------------------------- 143 (199)
T ss_dssp --CSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECCHHHHHHHHHHTGGGCG-------------------------
T ss_pred --cCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECCHHHHHHHHhcCCCCCC-------------------------
Confidence 2567787 45555555555543 6789999999999999998 543222
Q ss_pred CCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHHHHHHHhccc
Q 023080 208 PLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALNLD 277 (287)
Q Consensus 208 ~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~~I~~~l~~~ 277 (287)
...+++.+.+.+++..+.....+ +|.. .. +.||+++ ++++++++|.+.|...
T Consensus 144 -------------~~~~~~~~~~~~~i~~~~~~r~~---~y~~-ad-~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 144 -------------ILQGKEDDELMDFIIQALEKRAP---FYTQ-AQ-YIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp -------------GGTTCCHHHHHHHHHHHHHHHHH---HHTT-SS-EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred -------------CcCCCChhhHHHHHHHHHHHHHH---HHhh-CC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 01133445555555555444333 5655 33 4577765 9999999999888643
No 25
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.74 E-value=4.1e-17 Score=139.81 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=113.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHH-HHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFN-LLSKRLE 127 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~-~l~~~l~ 127 (287)
..++++|+|+|+|||||||+++.|++.++ ..++.+. ....++.+..+++++..+....+....- ....+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~ 96 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRRE 96 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34778999999999999999999999996 4555441 2345677888999888776544433222 2223332
Q ss_pred hc------ccCCCccEEEe----------CCCCCHHHH--HHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080 128 AG------QAGGESGFILD----------GFPRTVKQA--EILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCG 185 (287)
Q Consensus 128 ~~------~~~~~~g~Ild----------g~p~~~~~~--~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g 185 (287)
.. ....+..+|+| |++++..+. ..+..+ ..||++|||++|++++++|+.+|....
T Consensus 97 ~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~--- 173 (229)
T 4eaq_A 97 HLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ--- 173 (229)
T ss_dssp HCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCc---
Confidence 21 01114678999 888765443 233332 369999999999999999999874210
Q ss_pred CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080 186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV-YNEKSQPVEEFYRNRGKLLEFDLPGGIP 264 (287)
Q Consensus 186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~-y~~~~~~~~~~y~~~~~~~~id~~~~~e 264 (287)
.+.++....+.+|+.. |.+.. +.| ...++.||++++++
T Consensus 174 -----------------------------------dr~e~~~~~~~~rv~~~y~~l~----~~~--~~~~~vIDa~~s~e 212 (229)
T 4eaq_A 174 -----------------------------------NRLDQEDLKFHEKVIEGYQEII----HNE--SQRFKSVNADQPLE 212 (229)
T ss_dssp ------------------------------------CCCHHHHHHHHHHHHHHHHHT----TTC--TTTEEEEETTSCHH
T ss_pred -----------------------------------cchhhhhHHHHHHHHHHHHHHH----HhC--CCCEEEEeCCCCHH
Confidence 1223233444455544 33321 122 24688999999999
Q ss_pred cHHHHHHHHhccc
Q 023080 265 ESWPKLLEALNLD 277 (287)
Q Consensus 265 ev~~~I~~~l~~~ 277 (287)
+++++|.+.|...
T Consensus 213 ev~~~I~~~l~~~ 225 (229)
T 4eaq_A 213 NVVEDTYQTIIKY 225 (229)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 26
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.73 E-value=1.3e-16 Score=131.48 Aligned_cols=170 Identities=15% Similarity=0.166 Sum_probs=98.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+..|+|+|+|||||||+++.|++++|++++++|++++.... .. +.+++.. |..........++......
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g--~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 74 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG--AD----IAWIFEMEGEAGFRRREREMIEALCKL---- 74 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT--SC----HHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CC----hhhHHHHhCHHHHHHHHHHHHHHHHhc----
Confidence 55799999999999999999999999999999998776321 12 2222221 1111122222333332222
Q ss_pred CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH--hCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC--LGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl--~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
...+|..| .+........+... .++|||++|.+++.+|+ ..+..
T Consensus 75 -~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl~~~~~~~---------------------------- 122 (185)
T 3trf_A 75 -DNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRIGQKGEMR---------------------------- 122 (185)
T ss_dssp -SSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHHHCCTTCS----------------------------
T ss_pred -CCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHHhhcCCCC----------------------------
Confidence 13444444 44555555555443 38999999999999999 44321
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC-CcccHHHHHHHHhccchhhhh
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG-GIPESWPKLLEALNLDEYEEK 282 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~-~~eev~~~I~~~l~~~~~~~~ 282 (287)
|+.........+++....... .+|..... +.||+++ ++++++++|.+.+.....+.|
T Consensus 123 -------------rp~~~~~~~~~~l~~~~~~r~---~~y~~~ad-~~Idt~~~~~~e~~~~I~~~l~~~~~~~~ 180 (185)
T 3trf_A 123 -------------RPLFIKNNSKEKLQQLNEIRK---PLYQAMAD-LVYPTDDLNPRQLATQILVDIKQTYSDLE 180 (185)
T ss_dssp -------------SCCCCCHHHHHHHHHHHHHHH---HHHHHHCS-EEEECTTCCHHHHHHHHHHHSCC------
T ss_pred -------------CCCCCCCCHHHHHHHHHHHHH---HHHhhcCC-EEEECCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 112211222223333322222 34444233 4577765 899999999999987665444
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.71 E-value=3.4e-16 Score=129.27 Aligned_cols=169 Identities=15% Similarity=0.222 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCC-chHHHHHHHHhcCCcccH--HHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSG-SLSQQLSEIVNQGKLVSD--EIIFNLLSKRL 126 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~-~~~~~i~~~l~~g~~~~~--~~~~~~l~~~l 126 (287)
++|+|+|+|||||||+++.|+++++ +.+++.++++++.+.... ..+. .. .+...+. ......+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---DE--MRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---HH--HTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---hh--hhcCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999998 889998898877553211 1110 00 0122222 22222222222
Q ss_pred Hhcc--cCCCccEEEeCCCCCHHH--------HHHHHHhcCccEEEEEecCHHHHHHH-HhC--CCccccCCCccccccc
Q 023080 127 EAGQ--AGGESGFILDGFPRTVKQ--------AEILEEVMDIDLVVNLKLCEDVLLEK-CLG--RRMCSQCGGNFNVANI 193 (287)
Q Consensus 127 ~~~~--~~~~~g~Ildg~p~~~~~--------~~~l~~~~~~d~vi~L~~~~e~l~~R-l~~--R~~~~~~g~~y~~~~~ 193 (287)
.... .. +..+|+||++....+ ...+... .|+.+|||++|++++++| +.. |...
T Consensus 77 ~~~l~~~~-~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~l~~~~~~~~~rr~~~~~R~~~------------ 142 (194)
T 1nks_A 77 AEEARAGG-EGYLFIDTHAVIRTPSGYLPGLPSYVITEI-NPSVIFLLEADPKIILSRQKRDTTRNRN------------ 142 (194)
T ss_dssp HHHHHHTC-SSEEEEEECSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHHCTTTCCC------------
T ss_pred HHHhhccC-CCEEEECCchhhccccccccCCCHHHHHhc-CCCEEEEEeCCHHHHHHHHHhhcccCCC------------
Confidence 2211 12 468999987432222 2333333 489999999999998866 666 5310
Q ss_pred cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhhchHHHHHHHhcCcEEEE-eCCCCcccHHHHH
Q 023080 194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK--ERLRVYNEKSQPVEEFYRNRGKLLEF-DLPGGIPESWPKL 270 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~--~rl~~y~~~~~~~~~~y~~~~~~~~i-d~~~~~eev~~~I 270 (287)
+....+.+. .++...+ ......|. ...++.| |+++++++++++|
T Consensus 143 -----------------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~I~d~~~~~e~v~~~I 189 (194)
T 1nks_A 143 -----------------------------DYSDESVILETINFARYA---ATASAVLA-GSTVKVIVNVEGDPSIAANEI 189 (194)
T ss_dssp -----------------------------CCCSHHHHHHHHHHHHHH---HHHHHHHH-TCEEEEEECCSSCHHHHHHHH
T ss_pred -----------------------------CccCHHHHHHHHHHHHHH---HHHHHHhc-CCcEEEEeCCCCCHHHHHHHH
Confidence 111223222 2222221 22233332 2456788 9999999999999
Q ss_pred HHHhc
Q 023080 271 LEALN 275 (287)
Q Consensus 271 ~~~l~ 275 (287)
.+.|.
T Consensus 190 ~~~l~ 194 (194)
T 1nks_A 190 IRSMK 194 (194)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 88763
No 28
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.71 E-value=4.1e-16 Score=129.44 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHH-----
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRL----- 126 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l----- 126 (287)
++|+|+|++||||||+++.|++++ |+.++.+.+ ..++..+..+.+++..+...+.....-....+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 999987643 344566778888877666554432221111111
Q ss_pred HhcccCCCccEEEe----------CCCCCH--HHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080 127 EAGQAGGESGFILD----------GFPRTV--KQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV 190 (287)
Q Consensus 127 ~~~~~~~~~g~Ild----------g~p~~~--~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~ 190 (287)
.......+..+|+| |+++.. .....+.. ...||++|+|++|++++++|+.+|.
T Consensus 75 i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----------- 143 (197)
T 2z0h_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----------- 143 (197)
T ss_dssp HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-----------
T ss_pred HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC-----------
Confidence 11111114567788 344332 22222222 2259999999999999999998872
Q ss_pred ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHH
Q 023080 191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270 (287)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I 270 (287)
+.++ .+..++....|... .+.+ ...++.||+++++++++++|
T Consensus 144 -------------------------------~~~~-~~~~~~~~~~~~~~----~~~~--~~~~~~Id~~~~~e~~~~~i 185 (197)
T 2z0h_A 144 -------------------------------RFEK-REFLERVREGYLVL----AREH--PERIVVLDGKRSIEEIHRDV 185 (197)
T ss_dssp -------------------------------CCCC-HHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCHHHHHHHH
T ss_pred -------------------------------cccH-HHHHHHHHHHHHHH----HHhC--CCCEEEEeCCCCHHHHHHHH
Confidence 1122 24444333444432 2222 34578899999999999999
Q ss_pred HHHhccc
Q 023080 271 LEALNLD 277 (287)
Q Consensus 271 ~~~l~~~ 277 (287)
.+.+...
T Consensus 186 ~~~l~~~ 192 (197)
T 2z0h_A 186 VREVKRR 192 (197)
T ss_dssp HHHTTCC
T ss_pred HHHHHHH
Confidence 9998764
No 29
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.71 E-value=9.7e-17 Score=132.48 Aligned_cols=117 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCccc--HHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVS--DEIIFNLLSKRL 126 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~--~~~~~~~l~~~l 126 (287)
+++|+|+|+|||||||+++.|+++++ +++++++++++......+... ...+. ..... ...+...+...+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 56899999999999999999999998 999999999987654322100 00000 01100 111222222223
Q ss_pred HhcccCCCccEEEeCCCCCHHHH--------HHHHHhcCccEEEEEecCHHHHHH-HHhC
Q 023080 127 EAGQAGGESGFILDGFPRTVKQA--------EILEEVMDIDLVVNLKLCEDVLLE-KCLG 177 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~~~~~~--------~~l~~~~~~d~vi~L~~~~e~l~~-Rl~~ 177 (287)
.... . +..+|+||++....+. ..+... .|+++|||++|++++++ |+..
T Consensus 79 ~~~~-~-~~~viid~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 79 AEMA-K-ESPVAVDTHSTVSTPKGYLPGLPSWVLNEL-NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHHH-T-TSCEEEECCSEEEETTEEEESSCHHHHHHH-CCSEEEEEECCHHHHHHHHHTS
T ss_pred Hhhc-c-CCeEEEccceeccccccccccCcHHHHhcc-CCCEEEEEeCCHHHHHHHHhhh
Confidence 2211 1 3579999975421110 122222 47899999999999996 9977
No 30
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.70 E-value=3.4e-16 Score=130.96 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHH---HHHHHHHHHhc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII---FNLLSKRLEAG 129 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~---~~~l~~~l~~~ 129 (287)
.+++|+|+|++||||||+++.|++.+|+.+++.|++..... ...+..|....+... ...+...+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~----------~~~~~~g~~~~~~~~~~~~~~l~~~~--- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPEN----------IRKMSEGIPLTDDDRWPWLAAIGERL--- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHH----------HHHHHHTCCCCHHHHHHHHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhh----------HHHHhcCCCCCchhhHHHHHHHHHHH---
Confidence 46789999999999999999999999999999987742210 111122333332222 22222222
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
.. +.++|+|+..........+.... .++.+|+|++|.+++++|+.+|..+
T Consensus 84 -~~-~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--------------------------- 134 (202)
T 3t61_A 84 -AS-REPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--------------------------- 134 (202)
T ss_dssp -TS-SSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS---------------------------
T ss_pred -hc-CCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc---------------------------
Confidence 11 46899998877777777776654 3578999999999999999987421
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
....+.++.+++.+. +. +. ....+.||+++++++++++|.+.|....
T Consensus 135 ---------------~~~~~~~~~~~~~~~----~~---~~-~~~~~~Id~~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 135 ---------------FMPSSLLQTQLETLE----DP---RG-EVRTVAVDVAQPLAEIVREALAGLARLA 181 (202)
T ss_dssp ---------------CCCHHHHHHHHHHCC----CC---TT-STTEEEEESSSCHHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHhcC----CC---CC-CCCeEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 112444444333332 11 11 2235789999999999999999887543
No 31
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.70 E-value=1.2e-17 Score=140.53 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=109.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH-------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK------- 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~------- 124 (287)
.++++|+|+|+|||||||+++.|+++++..++++ +++++. ..++..+..+.+++..+..+++.....++..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998877777 333321 1234566777777776666665443322221
Q ss_pred HHHhcccCCCccEEEeCCCCCH--HH-------HHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080 125 RLEAGQAGGESGFILDGFPRTV--KQ-------AEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA 191 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~~--~~-------~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~ 191 (287)
.+...... +..+|+|+++.+. .+ ...+.. ...||++|||++|++++++|+.+|.
T Consensus 86 ~i~~~l~~-~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~------------ 152 (212)
T 2wwf_A 86 EIKSLLLK-GIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE------------ 152 (212)
T ss_dssp HHHHHHHH-TCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS------------
T ss_pred HHHHHHhC-CCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc------------
Confidence 11111011 3579999987531 11 112221 1358999999999999999986542
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL 271 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~ 271 (287)
.+.+ . +.+..++...+..... ...++.||+++++++++++|.
T Consensus 153 -----------------------------~r~~-~-~~~~~~~~~~~~~~~~-------~~~~~~Id~~~~~~~~~~~i~ 194 (212)
T 2wwf_A 153 -----------------------------EIYE-K-VETQKKIYETYKHFAH-------EDYWINIDATRKIEDIHNDIV 194 (212)
T ss_dssp -----------------------------STTC-S-HHHHHHHHHHGGGGTT-------CTTEEEEECSSCHHHHHHHHH
T ss_pred -----------------------------cccc-H-HHHHHHHHHHHHHHhc-------cCCEEEEECCCCHHHHHHHHH
Confidence 1112 2 3444555433222211 234788999999999999999
Q ss_pred HHhccc
Q 023080 272 EALNLD 277 (287)
Q Consensus 272 ~~l~~~ 277 (287)
+.+...
T Consensus 195 ~~l~~~ 200 (212)
T 2wwf_A 195 KEVTKI 200 (212)
T ss_dssp HHHTTS
T ss_pred HHHHHh
Confidence 998754
No 32
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.69 E-value=8.8e-16 Score=129.28 Aligned_cols=174 Identities=17% Similarity=0.173 Sum_probs=105.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH-HHHHh--
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS-KRLEA-- 128 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~-~~l~~-- 128 (287)
+.+|+|.|++||||||+++.|+++| |..++.+ + .+.+++.+..+++++.++...+.....-++. .+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~----~--eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT----R--EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE----E--SSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe----e--CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 5555543 1 1346678888888888776665544322221 11111
Q ss_pred ----cccCCCccEEEeCC----------CC--CHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 129 ----GQAGGESGFILDGF----------PR--TVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 129 ----~~~~~~~g~Ildg~----------p~--~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
+....+..+|+|.| .+ ..++...+... ..||++|||++|++++++|+.+|+...
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~------ 149 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQ------ 149 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcc------
Confidence 01111356777743 22 23344444432 359999999999999999998875221
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
.|-+. ..+..++-.+.|.+. .. .....++.||+++++++|+
T Consensus 150 --------------------------------dr~e~~~~~f~~~v~~~Y~~l----~~--~~~~~~~~IDa~~~~e~V~ 191 (205)
T 4hlc_A 150 --------------------------------NRLDQEDLKFHEKVIEGYQEI----IH--NESQRFKSVNADQPLENVV 191 (205)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHH----HH--SCCTTEEEEETTSCHHHHH
T ss_pred --------------------------------cchhccCHHHHHHHHHHHHHH----HH--hCCCCEEEEECCCCHHHHH
Confidence 01111 122222222333321 11 1234689999999999999
Q ss_pred HHHHHHhccc
Q 023080 268 PKLLEALNLD 277 (287)
Q Consensus 268 ~~I~~~l~~~ 277 (287)
++|.+.|...
T Consensus 192 ~~i~~~i~~~ 201 (205)
T 4hlc_A 192 EDTYQTIIKY 201 (205)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887643
No 33
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.69 E-value=2e-16 Score=130.35 Aligned_cols=165 Identities=22% Similarity=0.276 Sum_probs=98.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
++|+|+|+|||||||+|+.|++++|+++++.|++++... +.. +.+++. .|.....+.....+...+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~---- 72 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALADH---- 72 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhcC----
Confidence 469999999999999999999999999999999887643 111 223332 232222333333343333221
Q ss_pred CccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCC
Q 023080 134 ESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLP 211 (287)
Q Consensus 134 ~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
..+|.+| +.........+. .+.+|||++|.+++++|+.+|...+
T Consensus 73 -~~vi~~g~~~v~~~~~~~~l~----~~~vV~L~~~~e~~~~Rl~~r~~r~----------------------------- 118 (184)
T 2iyv_A 73 -DGVLSLGGGAVTSPGVRAALA----GHTVVYLEISAAEGVRRTGGNTVRP----------------------------- 118 (184)
T ss_dssp -CSEEECCTTGGGSHHHHHHHT----TSCEEEEECCHHHHHHHTTCCCCCS-----------------------------
T ss_pred -CeEEecCCcEEcCHHHHHHHc----CCeEEEEeCCHHHHHHHHhCCCCCC-----------------------------
Confidence 2333334 222222222221 5689999999999999998874211
Q ss_pred CcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccchh
Q 023080 212 PAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLDEY 279 (287)
Q Consensus 212 p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~~~ 279 (287)
+.. .++..+ +++.+..... .+|..... +.||++ .++++++++|.+.+.....
T Consensus 119 -------~~~-~~~~~~----~i~~~~~~r~---~~~~~~~~-~~Idt~~~s~ee~~~~I~~~l~~~~~ 171 (184)
T 2iyv_A 119 -------LLA-GPDRAE----KYRALMAKRA---PLYRRVAT-MRVDTNRRNPGAVVRHILSRLQVPSP 171 (184)
T ss_dssp -------STT-SCCHHH----HHHHHHHHHH---HHHHHHCS-EEEECSSSCHHHHHHHHHTTSCCCCT
T ss_pred -------Ccc-CCCHHH----HHHHHHHHHH---HHHhccCC-EEEECCCCCHHHHHHHHHHHHhhcCc
Confidence 000 112222 2333322222 34443333 568887 7999999999999876543
No 34
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.69 E-value=2.8e-16 Score=127.33 Aligned_cols=110 Identities=20% Similarity=0.371 Sum_probs=71.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
|+|+|+|+|||||||+++.|++++|++++++|++.+... +..+.+++.. |......+...++ ..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~l-~~l~~----- 68 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLSIPQIFEKKGEAYFRKLEFEVL-KDLSE----- 68 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHSCHHHHHHHHHHHH-HHHTT-----
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCCHHHHHHHhChHHHHHHHHHHH-HHHhc-----
Confidence 579999999999999999999999999999999887643 2223333332 2111111111222 22221
Q ss_pred CccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 134 ESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 134 ~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...+|++ | .+........+. .++.+|||++|++++++|+..|.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l~---~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFMK---SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHHH---TTSEEEEEECCHHHHHHHCBCTT
T ss_pred cCCeEEECCCCEeCCHHHHHHHH---cCCEEEEEECCHHHHHHHHhCCC
Confidence 2456665 4 233333333333 37899999999999999998864
No 35
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.67 E-value=5.8e-15 Score=124.97 Aligned_cols=174 Identities=16% Similarity=0.152 Sum_probs=111.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCC--cccHHHH-HHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGK--LVSDEII-FNLLSKRL 126 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~--~~~~~~~-~~~l~~~l 126 (287)
++++|+|.|++||||||+++.|+++++ +.++.+ ++ +.++++|+.+++++..+. .+..... .-....+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~----~~--p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~ 78 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT----RE--PGGTPLAERIRELLLAPSDEPMAADTELLLMFAARA 78 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE----ES--SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc----cC--CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999984 455544 22 356778889999988764 2333222 11112222
Q ss_pred Hhc------ccCCCccEEEeCC------------CCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccC
Q 023080 127 EAG------QAGGESGFILDGF------------PRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQC 184 (287)
Q Consensus 127 ~~~------~~~~~~g~Ildg~------------p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~ 184 (287)
.+. ....+..+|+|-| ....++...+..+ ..||++|||++|++++++|+.+|...
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~--- 155 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRL--- 155 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSC---
T ss_pred HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence 210 0111456788832 1233445555442 46999999999999999999988410
Q ss_pred CCccccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCc
Q 023080 185 GGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGI 263 (287)
Q Consensus 185 g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~ 263 (287)
.+.+. ..+.+++..+.|... .+.| ...++.||+++++
T Consensus 156 ------------------------------------dr~E~~~~~~~~rv~~~y~~l----~~~~--~~~~~vIDa~~s~ 193 (213)
T 4edh_A 156 ------------------------------------DRFEQEDRRFFEAVRQTYLQR----AAQA--PERYQVLDAGLPL 193 (213)
T ss_dssp ------------------------------------CTTTTSCHHHHHHHHHHHHHH----HHHC--TTTEEEEETTSCH
T ss_pred ------------------------------------CcccccHHHHHHHHHHHHHHH----HHHC--CCcEEEEeCCCCH
Confidence 01111 345555444455442 2223 3468999999999
Q ss_pred ccHHHHHHHHhccc
Q 023080 264 PESWPKLLEALNLD 277 (287)
Q Consensus 264 eev~~~I~~~l~~~ 277 (287)
++++++|.+.|...
T Consensus 194 eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 194 AEVQAGLDRLLPNL 207 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988754
No 36
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.67 E-value=4.7e-16 Score=132.84 Aligned_cols=173 Identities=19% Similarity=0.184 Sum_probs=108.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL-------GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l-------g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~ 124 (287)
.++++|+|.|++||||||+++.|++++ |..++.+ ++ +.+++.|+.+++++..+...+.....-....
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999998 4444432 22 3566788899999888765444433222223
Q ss_pred HHHhc------ccCCCccEEEeCCC------------CCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 125 RLEAG------QAGGESGFILDGFP------------RTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 125 ~l~~~------~~~~~~g~Ildg~p------------~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
+.... ....+..+|+|.|. ...++...+... ..||++|||++|++++++|+.+|...
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~- 175 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMP- 175 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC-
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCc-
Confidence 32211 01114568888432 223444444432 35999999999999999999887410
Q ss_pred cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCC-cHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC
Q 023080 183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADD-TEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG 261 (287)
Q Consensus 183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d-~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~ 261 (287)
.+.+. ..+.+++..+.|... .+.| ...++.||+++
T Consensus 176 --------------------------------------dr~E~~~~ef~~rv~~~Y~~l----a~~~--~~~~~vIDa~~ 211 (227)
T 3v9p_A 176 --------------------------------------DKFESESDAFFARTRAEYLRR----AQEA--PHRFVIVDSSE 211 (227)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHHH----HHHC--TTTEEEEETTS
T ss_pred --------------------------------------cchhhhhHHHHHHHHHHHHHH----HHHh--cCCEEEEeCCC
Confidence 11122 234444444445432 2222 34689999999
Q ss_pred CcccHHHHHHHHhc
Q 023080 262 GIPESWPKLLEALN 275 (287)
Q Consensus 262 ~~eev~~~I~~~l~ 275 (287)
++++|+++|.+.|.
T Consensus 212 s~eeV~~~I~~~l~ 225 (227)
T 3v9p_A 212 PIAQIRKQLEGVLA 225 (227)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998875
No 37
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.67 E-value=1.8e-15 Score=123.63 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=91.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HhCCCeeehhHHHHHHHHcCCc-----hHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSK-FLGVPHIATGDLVREELASSGS-----LSQQLSEIVNQGKLVSDEIIFNLLSKRLE 127 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~-~lg~~~i~~d~llr~~~~~~~~-----~~~~i~~~l~~g~~~~~~~~~~~l~~~l~ 127 (287)
|.+|+|+|+|||||||+++.|++ .+|+.++++| .++..+...+. +...-.. ...+.....+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d-~~r~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEG-------IVTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCGGGCCCCHHHHH-------HHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHH-HHHHHhhCCCccchhhhchhhhh-------HHHHHHHHHHHHHHh
Confidence 46899999999999999999999 6899999985 55554433211 1111001 112223344444442
Q ss_pred hcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080 128 AGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS 203 (287)
Q Consensus 128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 203 (287)
.. .. +.++|+|+++.+..+...+... +.+..+|||++|.+++++|+..|..+
T Consensus 74 ~~-~~-g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~---------------------- 129 (181)
T 1ly1_A 74 GG-DS-VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK---------------------- 129 (181)
T ss_dssp SC-SS-CCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG----------------------
T ss_pred hc-cC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC----------------------
Confidence 11 11 5789999999887766655532 23557999999999999999987521
Q ss_pred ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
....+.++++++.|.... .+ .. +.+|...+ +++...|...|..
T Consensus 130 --------------------~~~~~~i~~~~~~~~~~~-----~~---~~-~~id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 130 --------------------AVPIDVLRSMYKSMREYL-----GL---PV-YNGTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHH-----TC---CC-C---------------------
T ss_pred --------------------CCCHHHHHHHHHHhhccC-----CC---Cc-cccCCCCC-ceeeehhhhhhhc
Confidence 335678888888886641 11 11 23776653 7788888777654
No 38
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.67 E-value=4.4e-16 Score=126.45 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
.+|+|+|+|||||||+++.|++++|++++++|+++++.. +..+.+++.. |.....+....++......
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~----- 76 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSVREIFEELGEDNFRMFEKNLIDELKTL----- 76 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCHHHHHHHhCHHHHHHHHHHHHHHHHhc-----
Confidence 478999999999999999999999999999999887743 1223344432 3222222222333332211
Q ss_pred CccE-EEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 134 ESGF-ILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 134 ~~g~-Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+ |++ | ++.. .. +..++.+|||++|++++++|+..|
T Consensus 77 -~~~~Vi~~g~g~~~~-~~------l~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 77 -KTPHVISTGGGIVMH-EN------LKGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp -SSCCEEECCGGGGGC-GG------GTTSEEEEEEECCHHHHHHHHCC-
T ss_pred -CCCEEEECCCCEech-hH------HhcCCEEEEEECCHHHHHHHHhcc
Confidence 234 444 3 3333 21 234789999999999999999887
No 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.66 E-value=1.1e-15 Score=124.27 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
++|+|+|+|||||||+++.|++++|+++++.|++++.. .+.... +++. .|..........++. .+. .
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~----~~~~~~~~~~~~~~~~~~~~-~l~----~- 70 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVA----DVVAAEGWPGFRRRESEALQ-AVA----T- 70 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHH----HHHHHHHHHHHHHHHHHHHH-HHC----C-
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHH----HHHHHcCHHHHHHHHHHHHH-Hhh----c-
Confidence 47999999999999999999999999999999888764 222222 2221 111111111111111 121 1
Q ss_pred CccEEEe-C--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHh--CCCccccCCCccccccccccCCCCCCCccCCC
Q 023080 134 ESGFILD-G--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCL--GRRMCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 134 ~~g~Ild-g--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~--~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
..+|++ | .+........+.. ++.+|||++|++++++|+. .|..+
T Consensus 71 -~~~vi~~g~~~~~~~~~~~~l~~---~~~~i~l~~~~e~~~~R~~~~~r~~~--------------------------- 119 (173)
T 1e6c_A 71 -PNRVVATGGGMVLLEQNRQFMRA---HGTVVYLFAPAEELALRLQASLQAHQ--------------------------- 119 (173)
T ss_dssp -SSEEEECCTTGGGSHHHHHHHHH---HSEEEEEECCHHHHHHHHHHHHCSCC---------------------------
T ss_pred -CCeEEECCCcEEeCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhccCCCC---------------------------
Confidence 355665 4 3333333443432 6799999999999999998 76211
Q ss_pred CCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 023080 209 LLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNL 276 (287)
Q Consensus 209 ~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~ 276 (287)
++....+...+++..+..... .+|.... +.||++ .+++++.++|.+.+..
T Consensus 120 -------------r~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 120 -------------RPTLTGRPIAEEMEAVLRERE---ALYQDVA--HYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp -------------CCCTTHHHHHHHHHHHHHHHH---HHHHHHC--SEEEETTSCHHHHHHHHHHHTTC
T ss_pred -------------CCcCCCCCHHHHHHHHHHHHH---HHHHhCc--EEEECCCCCHHHHHHHHHHHhcc
Confidence 111222334445555544333 2344422 457877 7999999999998863
No 40
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.66 E-value=9.1e-16 Score=128.14 Aligned_cols=167 Identities=14% Similarity=0.053 Sum_probs=103.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHH--HH----
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLS--KR---- 125 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~--~~---- 125 (287)
++++|+|+|+|||||||+++.|++++ |+++++++... ..+..++.+.+++..+..+..... .++. .+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~-----~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~ 76 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ-----RSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFA 76 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC-----TTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC-----CCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHH
Confidence 57899999999999999999999999 68888764221 123466778888876544443322 1111 11
Q ss_pred --HHhcccCCCccEEEeCCCCCH-----------HHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCccccc
Q 023080 126 --LEAGQAGGESGFILDGFPRTV-----------KQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVA 191 (287)
Q Consensus 126 --l~~~~~~~~~g~Ildg~p~~~-----------~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~ 191 (287)
+...... +..+|+|+|+.+. .....+.. ...||++|||++|++++++ +|..+
T Consensus 77 ~~i~~~l~~-~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~d---------- 142 (204)
T 2v54_A 77 SFIQEQLEQ-GITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVGEE---------- 142 (204)
T ss_dssp HHHHHHHHT-TCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSSS----------
T ss_pred HHHHHHHHC-CCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCcc----------
Confidence 1111011 3578999887532 22222222 1358999999999998877 34211
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH-HHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHH
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV-YNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKL 270 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~-y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I 270 (287)
+.+ . ..+.+|+.. |.+... .+ ...++.||+++++++++++|
T Consensus 143 ------------------------------~~e-~-~~~~~rl~~~y~~~~~----~~--~~~~~~Id~~~~~~~v~~~i 184 (204)
T 2v54_A 143 ------------------------------IYE-D-VTFQQKVLQEYKKMIE----EG--DIHWQIISSEFEEDVKKELI 184 (204)
T ss_dssp ------------------------------TTC-C-SHHHHHHHHHHHHHHT----TC--SSCEEEECTTSCHHHHHHHH
T ss_pred ------------------------------ccc-H-HHHHHHHHHHHHHHHH----hC--CCcEEEEECCCCHHHHHHHH
Confidence 001 1 234445544 433211 11 23578999999999999999
Q ss_pred HHHhccc
Q 023080 271 LEALNLD 277 (287)
Q Consensus 271 ~~~l~~~ 277 (287)
.+.+...
T Consensus 185 ~~~l~~~ 191 (204)
T 2v54_A 185 KNIVIEA 191 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 41
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.66 E-value=2.4e-15 Score=127.32 Aligned_cols=169 Identities=15% Similarity=0.143 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHHH----------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDEI---------- 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~~---------- 117 (287)
++++|+|+|++||||||+++.|++ +|++++++|++.+.....++.....+.+.+... ..+....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 568999999999999999999998 999999999998875444443334444433211 1122211
Q ss_pred --------HHHHHHHHHHh-cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 118 --------IFNLLSKRLEA-GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 118 --------~~~~l~~~l~~-~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
+...+...+.. .....+..+|+|+ |...+.. + ...+|.+|||++|++++++|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~~l~~~~--~--~~~~d~vi~l~~~~e~~~~Rl~~R~--------- 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQATSPYVLWVV-PLLVENS--L--YKKANRVLVVDVSPETQLKRTMQRD--------- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-TTTTTTT--G--GGGCSEEEEEECCHHHHHHHHHHHH---------
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-eeeeccC--c--cccCCEEEEEECCHHHHHHHHHHcC---------
Confidence 11111111111 0110122344444 4432221 1 1247899999999999999998762
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~ 268 (287)
..+.+.+..++... .+..+++...+ +.||++++++++.+
T Consensus 148 -----------------------------------~~~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~~ 186 (218)
T 1vht_A 148 -----------------------------------DVTREHVEQILAAQ----ATREARLAVAD--DVIDNNGAPDAIAS 186 (218)
T ss_dssp -----------------------------------TCCHHHHHHHHHHS----CCHHHHHHHCS--EEEECSSCTTSHHH
T ss_pred -----------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCHHHHHH
Confidence 11234455554432 12223333333 46888889999999
Q ss_pred HHHHHhccc
Q 023080 269 KLLEALNLD 277 (287)
Q Consensus 269 ~I~~~l~~~ 277 (287)
+|.+.+...
T Consensus 187 ~I~~~l~~~ 195 (218)
T 1vht_A 187 DVARLHAHY 195 (218)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888643
No 42
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.65 E-value=1.7e-15 Score=130.14 Aligned_cols=178 Identities=18% Similarity=0.137 Sum_probs=103.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC---CcccHHHHH-HHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG---KLVSDEIIF-NLLSKRLE 127 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g---~~~~~~~~~-~~l~~~l~ 127 (287)
.++++|+|.|++||||||+++.|+++++..++++..++++ +.++++|+.+++++..+ ..+...... -....+..
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~ 102 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ 102 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999985443331122333 35678889999988632 223332221 11111111
Q ss_pred hc------ccCCCccEEEeC----------CCC--CHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080 128 AG------QAGGESGFILDG----------FPR--TVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCG 185 (287)
Q Consensus 128 ~~------~~~~~~g~Ildg----------~p~--~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g 185 (287)
.. ....+..+|+|- +.+ ..++...+..+ ..||++|||++|++++++|+.+|...
T Consensus 103 ~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~---- 178 (236)
T 3lv8_A 103 LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGEL---- 178 (236)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CC----
T ss_pred HHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence 10 011145778883 222 23344444432 36999999999999999999887410
Q ss_pred CccccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc
Q 023080 186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP 264 (287)
Q Consensus 186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e 264 (287)
.+.+ +..+..++..+.|.+. ......++.||++++++
T Consensus 179 -----------------------------------dr~E~~~~~~~~rv~~~y~~l-------a~~~~~~~vIDa~~sie 216 (236)
T 3lv8_A 179 -----------------------------------DRIEKMDISFFERARERYLEL-------ANSDDSVVMIDAAQSIE 216 (236)
T ss_dssp -----------------------------------CTTTTSCHHHHHHHHHHHHHH-------HHHCTTEEEEETTSCHH
T ss_pred -----------------------------------chhhhhHHHHHHHHHHHHHHH-------HHHCCCEEEEeCCCCHH
Confidence 0111 1234444333444332 22222389999999999
Q ss_pred cHHHHHHHHhccc
Q 023080 265 ESWPKLLEALNLD 277 (287)
Q Consensus 265 ev~~~I~~~l~~~ 277 (287)
+++++|.+.|...
T Consensus 217 eV~~~I~~~l~~~ 229 (236)
T 3lv8_A 217 QVTADIRRALQDW 229 (236)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 43
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.65 E-value=9.6e-16 Score=126.79 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++++|+|+|+|||||||+++.|++++|+++++.|.+...........+......+.. .-.+.+...+...+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~--- 76 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGA---TAIMMLYHTAATILQS--- 76 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHH---HHHHHHHHHHHHHHHT---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhH---HHHHHHHHHHHHHHhC---
Confidence 4678999999999999999999999999999999776544222111101100000000 0001111222222322
Q ss_pred CCCccEEEeCCCCCHHHHHH---HHHh-cCccEEEEEecCHHHHHHHHhCCC
Q 023080 132 GGESGFILDGFPRTVKQAEI---LEEV-MDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~---l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+.++|+|+++....+... +... ..++++|||++|++++++|+.+|.
T Consensus 77 --g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 77 --GQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp --TCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred --CCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 468999998733222222 2322 357899999999999999998774
No 44
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.65 E-value=4.1e-15 Score=124.67 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCc-----cc---------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKL-----VS--------------- 114 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-----~~--------------- 114 (287)
++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+..... +.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5789999999999999999988 99999999998876433332222222222221111 00
Q ss_pred ---HHHHHHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080 115 ---DEIIFNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN 189 (287)
Q Consensus 115 ---~~~~~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~ 189 (287)
..+....+...+... ... +.++|+|+. ...+. . + ...+|.+|||++|++++++|+..|.
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~-~~~vv~~~~-~l~e~-~-~--~~~~d~vi~l~~~~e~~~~Rl~~R~---------- 145 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQT-APYTLFVVP-LLIEN-K-L--TALCDRILVVDVSPQTQLARSAQRD---------- 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-SSEEEEECT-TTTTT-T-C--GGGCSEEEEEECCHHHHHHHHC-------------
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CCEEEEEec-hhhhc-C-c--HhhCCEEEEEECCHHHHHHHHHHcC----------
Confidence 111122222221111 111 347888873 22111 0 1 1236899999999999999998873
Q ss_pred cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcc----c
Q 023080 190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIP----E 265 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~e----e 265 (287)
..+.+.+.+|++.. .+..+.|...+ +.||++++++ +
T Consensus 146 ----------------------------------~~~~e~~~~r~~~q----~~~~~~~~~ad--~vIdn~~~~~~~~~~ 185 (206)
T 1jjv_A 146 ----------------------------------NNNFEQIQRIMNSQ----VSQQERLKWAD--DVINNDAELAQNLPH 185 (206)
T ss_dssp ------------------------------------CHHHHHHHHHHS----CCHHHHHHHCS--EEEECCSCHHHHHHH
T ss_pred ----------------------------------CCCHHHHHHHHHhc----CChHHHHHhCC--EEEECCCCccccHHH
Confidence 12345566665541 23444555444 4688888999 9
Q ss_pred HHHHHHHHhcc
Q 023080 266 SWPKLLEALNL 276 (287)
Q Consensus 266 v~~~I~~~l~~ 276 (287)
+.++|.+.+..
T Consensus 186 ~~~~i~~~~~~ 196 (206)
T 1jjv_A 186 LQQKVLELHQF 196 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988864
No 45
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.65 E-value=2.1e-15 Score=127.62 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee-ehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHHHHH-------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI-ATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDEIIF------- 119 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i-~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~~~~------- 119 (287)
++++|+|.|++||||||+++.|++++....+ ++ .+.++ +.++++|+.+++++... ..+.+....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R 78 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAAR 78 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHH
Confidence 4679999999999999999999998832222 11 11222 35678899999988732 233332211
Q ss_pred -----HHHHHHHHhcccCCCccEEEeCC------------CCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCC
Q 023080 120 -----NLLSKRLEAGQAGGESGFILDGF------------PRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 120 -----~~l~~~l~~~~~~~~~g~Ildg~------------p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
..+...+.. +..+|+|-| ....++...+... ..||++|||++|++++++|+.+|
T Consensus 79 ~~~~~~~i~paL~~-----g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R 153 (213)
T 4tmk_A 79 VQLVETVIKPALAN-----GTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARAR 153 (213)
T ss_dssp HHHHHHTHHHHHHT-----TCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 112222222 456788832 1224444444442 36999999999999999999887
Q ss_pred CccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEE
Q 023080 179 RMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEF 257 (287)
Q Consensus 179 ~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~i 257 (287)
... .+.+ ...+..++..+.|.... + ....++.|
T Consensus 154 ~~~---------------------------------------dr~E~~~~~f~~rv~~~y~~la----~---~~~~~~vI 187 (213)
T 4tmk_A 154 GEL---------------------------------------DRIEQESFDFFNRTRARYLELA----A---QDKSIHTI 187 (213)
T ss_dssp SSC---------------------------------------CTTTTSCHHHHHHHHHHHHHHH----H---TCTTEEEE
T ss_pred CCc---------------------------------------cchhhhHHHHHHHHHHHHHHHH----H---HCCcEEEE
Confidence 410 0111 23455554444554422 1 12568999
Q ss_pred eCCCCcccHHHHHHHHhccc
Q 023080 258 DLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 258 d~~~~~eev~~~I~~~l~~~ 277 (287)
|+++++++|+++|.+.|...
T Consensus 188 Da~~s~eeV~~~I~~~l~~~ 207 (213)
T 4tmk_A 188 DATQPLEAVMDAIRTTVTHW 207 (213)
T ss_dssp ETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 46
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.64 E-value=7.8e-15 Score=122.73 Aligned_cols=168 Identities=15% Similarity=0.184 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHH------H
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL---GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSK------R 125 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~------~ 125 (287)
|+|+|.|+.||||||+++.|+++| |..++.+. .+.++..+..+.+++..+...+.....-.... .
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr------eP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR------EPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE------SSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE------CCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999988 66665441 13455667777777665544433322111111 1
Q ss_pred HHhcccCCCccEEEeCCC------------CCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccc
Q 023080 126 LEAGQAGGESGFILDGFP------------RTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFN 189 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p------------~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~ 189 (287)
+...-.. +..+|+|-|. ...+....+... ..||++|+|++|+++.++|...+.
T Consensus 75 I~~~L~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d---------- 143 (197)
T 3hjn_A 75 IKQYLSE-GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN---------- 143 (197)
T ss_dssp HHHHHTT-TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----------
T ss_pred HHHHHHC-CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----------
Confidence 1111111 4567777432 223333333322 359999999999999999854431
Q ss_pred cccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHH
Q 023080 190 VANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPK 269 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~ 269 (287)
| -+..+..++-.+.|.+. .+. ....++.||+++++++|+++
T Consensus 144 --------------------------------r-~e~~ef~~rv~~~y~~l----a~~--~~~~~~~IDa~~~~eeV~~~ 184 (197)
T 3hjn_A 144 --------------------------------R-FEKREFLERVREGYLVL----ARE--HPERIVVLDGKRSIEEIHRD 184 (197)
T ss_dssp --------------------------------T-TCCHHHHHHHHHHHHHH----HHH--CTTTEEEEETTSCHHHHHHH
T ss_pred --------------------------------c-cccHHHHHHHHHHHHHH----HHh--CCCCEEEEcCCCCHHHHHHH
Confidence 1 12234444333444332 221 23458899999999999999
Q ss_pred HHHHhccch
Q 023080 270 LLEALNLDE 278 (287)
Q Consensus 270 I~~~l~~~~ 278 (287)
|.+.|....
T Consensus 185 I~~~i~~rl 193 (197)
T 3hjn_A 185 VVREVKRRW 193 (197)
T ss_dssp HHHHHSCC-
T ss_pred HHHHHHHHh
Confidence 999998654
No 47
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.64 E-value=7e-15 Score=119.18 Aligned_cols=150 Identities=20% Similarity=0.145 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
++|+|+|+|||||||+++.|++++|+++++.|.+..... . +...+. . ...+.. +
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~----~~~~~~------------~-~~~l~~-----~ 55 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS----G----NEKLFE------------H-FNKLAD-----E 55 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT----C----HHHHHH------------H-HHHHTT-----C
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh----H----HHHHHH------------H-HHHHHh-----C
Confidence 478999999999999999999999999999987765411 0 011111 0 011111 2
Q ss_pred ccEEEeCC---------------CCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCC
Q 023080 135 SGFILDGF---------------PRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGG 198 (287)
Q Consensus 135 ~g~Ildg~---------------p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~ 198 (287)
..+|+|-+ .....+...+... ..|+.+|||++|++++.+|+.+|..
T Consensus 56 ~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r------------------ 117 (173)
T 3kb2_A 56 DNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD------------------ 117 (173)
T ss_dssp CSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC------------------
T ss_pred CCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC------------------
Confidence 34555521 1233344444433 3589999999999999999987631
Q ss_pred CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080 199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD 277 (287)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~ 277 (287)
.....+.+++..+.|.+ ....|. ...+.||++ .++++++++|.+.++..
T Consensus 118 ------------------------~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~id~~~~~~~ev~~~I~~~~~~~ 167 (173)
T 3kb2_A 118 ------------------------EYIEGKDIDSILELYRE----VMSNAG--LHTYSWDTGQWSSDEIAKDIIFLVELE 167 (173)
T ss_dssp ------------------------SCCCHHHHHHHHHHHHH----HHHTCS--SCEEEEETTTSCHHHHHHHHHHHHHHG
T ss_pred ------------------------cchhhhHHHHHHHHHHH----HHhhcC--CCEEEEECCCCCHHHHHHHHHHHHhCC
Confidence 11223344433344433 333343 346789988 49999999999998864
Q ss_pred h
Q 023080 278 E 278 (287)
Q Consensus 278 ~ 278 (287)
.
T Consensus 168 ~ 168 (173)
T 3kb2_A 168 H 168 (173)
T ss_dssp G
T ss_pred C
Confidence 3
No 48
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.63 E-value=3.1e-15 Score=131.93 Aligned_cols=171 Identities=16% Similarity=0.182 Sum_probs=104.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC-----CcccHH--------
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG-----KLVSDE-------- 116 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g-----~~~~~~-------- 116 (287)
.+.++++|+|+|++||||||+|+.|+ .+|++++++|++.+.....+......+.+.+... ..+...
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~ 149 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFG 149 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhC
Confidence 34577899999999999999999999 6899999999998876554444433333332211 111111
Q ss_pred ----------HHHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 117 ----------IIFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 117 ----------~~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
++...+ ...+......+...+|+||....... +. ..+|.+|||++|++++++|+..|.
T Consensus 150 ~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~vI~l~a~~ev~~~Rl~~R~--- 221 (281)
T 2f6r_A 150 NKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAG---WQ--SMVHEVWTVVIPETEAVRRIVERD--- 221 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTT---GG--GGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred CHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccc---hH--HhCCEEEEEcCCHHHHHHHHHHcC---
Confidence 111111 12221111111257999986432111 11 237899999999999999998773
Q ss_pred cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080 183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG 262 (287)
Q Consensus 183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~ 262 (287)
..+.+.+..|+... .+..+++...+ +.||++++
T Consensus 222 -----------------------------------------g~s~e~~~~ri~~q----~~~~~~~~~AD--~vIdn~~s 254 (281)
T 2f6r_A 222 -----------------------------------------GLSEAAAQSRLQSQ----MSGQQLVEQSN--VVLSTLWE 254 (281)
T ss_dssp -----------------------------------------CCCHHHHHHHHHTS----CCHHHHHHTCS--EEEECSSC
T ss_pred -----------------------------------------CCCHHHHHHHHHHc----CChHhhHhhCC--EEEECCCC
Confidence 11234555554443 22333443333 45788889
Q ss_pred cccHHHHHHHHhcc
Q 023080 263 IPESWPKLLEALNL 276 (287)
Q Consensus 263 ~eev~~~I~~~l~~ 276 (287)
++++.++|.+.+..
T Consensus 255 ~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 255 SHVTQSQVEKAWNL 268 (281)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988864
No 49
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.62 E-value=1.6e-15 Score=124.02 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=93.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHh-cCCcccHHHHHHHHHHHHHhcccCCC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVN-QGKLVSDEIIFNLLSKRLEAGQAGGE 134 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~-~g~~~~~~~~~~~l~~~l~~~~~~~~ 134 (287)
.|+|+|+|||||||+++.|++++|+++++.|++++... + ..+.+++. .|.....+....++.. +.. .
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g----~~~~~~~~~~g~~~~~~~~~~~~~~-l~~-----~ 73 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--N----QKVSEIFEQKRENFFREQEQKMADF-FSS-----C 73 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--T----SCHHHHHHHHCHHHHHHHHHHHHHH-HTT-----C
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--C----CCHHHHHHHcCHHHHHHHHHHHHHH-HHc-----c
Confidence 68999999999999999999999999999999887632 1 11222222 2222222222222222 221 2
Q ss_pred ccEEEe-CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCc
Q 023080 135 SGFILD-GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPA 213 (287)
Q Consensus 135 ~g~Ild-g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~ 213 (287)
..+|++ |.+.... .. + ...+.+|||++|++++.+|+..|...
T Consensus 74 ~~~vi~~g~~~~~~-~~-l---~~~~~~i~l~~~~e~~~~R~~~r~~~-------------------------------- 116 (175)
T 1via_A 74 EKACIATGGGFVNV-SN-L---EKAGFCIYLKADFEYLKKRLDKDEIS-------------------------------- 116 (175)
T ss_dssp CSEEEECCTTGGGS-TT-G---GGGCEEEEEECCHHHHTTCCCGGGTT--------------------------------
T ss_pred CCEEEECCCCEehh-hH-H---hcCCEEEEEeCCHHHHHHHHhcccCC--------------------------------
Confidence 356666 5432221 11 2 23568999999999999998766200
Q ss_pred ccccccccCCCCc-HHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccc
Q 023080 214 HCMSKLITRADDT-EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLD 277 (287)
Q Consensus 214 ~~~~~L~~r~~d~-~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~ 277 (287)
.|+... .+.++..+. ....+|.... .+.||++ .++++++++|.+.+..-
T Consensus 117 -------~r~~~~~~~~i~~~~~-------~r~~~y~~~~-~~~Idt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 117 -------KRPLFYDEIKAKKLYN-------ERLSKYEQKA-NFILNIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp -------TSCTTCCHHHHHHHHH-------HHHHHHHHHC-SEEEECTTCCHHHHHHHHHHHHC--
T ss_pred -------CCCCcccHHHHHHHHH-------HHHHHHHhcC-CEEEECCCCCHHHHHHHHHHHHHhc
Confidence 111111 333332221 2234554422 3678887 79999999999998753
No 50
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.62 E-value=1.8e-14 Score=120.37 Aligned_cols=164 Identities=15% Similarity=0.142 Sum_probs=101.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHH---HHHHHHHHHhc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEII---FNLLSKRLEAG 129 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~---~~~l~~~l~~~ 129 (287)
++.+|+|+|++||||||+++.|+..+|..+++.+++..... . .....|....+... ...+...+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~---------~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPEN---------I-ATMQRGIPLTDEDRWPWLRSLAEWMDAR 97 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHH---------H-HHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHH---------H-HHHhcCCCCCCcccccHHHHHHHHHHHH
Confidence 56789999999999999999999999999999877642210 0 00111222211111 11111111111
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPL 209 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~ 209 (287)
... +..+|+|.........+.+.....+..+|||+++.+++++|+.+|...+
T Consensus 98 ~~~-g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~--------------------------- 149 (200)
T 4eun_A 98 ADA-GVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF--------------------------- 149 (200)
T ss_dssp HHT-TCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS---------------------------
T ss_pred Hhc-CCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC---------------------------
Confidence 111 3578888755555555556555445688999999999999998885221
Q ss_pred CCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 210 LPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 210 ~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
...+.++..++.+. .+|... ..+.||++++++++.++|.+.|...
T Consensus 150 ---------------~~~~~l~~~~~~~~-------~~~~~~-~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 150 ---------------MPASLLQSQLATLE-------ALEPDE-SGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp ---------------SCGGGHHHHHHHCC-------CCCTTS-CEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred ---------------CCHHHHHHHHHHhC-------CCCCCC-CeEEEECCCCHHHHHHHHHHHHHhc
Confidence 11223333322221 123322 3578999999999999999999854
No 51
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.62 E-value=4.7e-15 Score=122.42 Aligned_cols=110 Identities=19% Similarity=0.381 Sum_probs=71.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-hCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcc---cHHHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF-LGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLV---SDEIIFNLLSKRLEA 128 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~-lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~---~~~~~~~~l~~~l~~ 128 (287)
+++.|+|+|+|||||||+++.|++. +|++++++|+++++.. -....+. .+.. ..+ .++.....+...+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-~~~~~~~----~~~~-~~~~r~~~~~~~~~l~~~~~~ 82 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-FYTEYDT----ELDT-HIIEEKDEDRLLDFMEPIMVS 82 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-CSCC----------C-CCCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-hhhhHHH----Hhhh-cccCCCCHHHHHHHHHHHHhc
Confidence 5678999999999999999999999 7999999999988731 1111111 1111 122 233333334333321
Q ss_pred cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 129 GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..++|+|+..... +.. ..++.+|||++|.+++++|+.+|+
T Consensus 83 -----~g~~vi~~~~~~~-----~~~-~~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 83 -----RGNHVVDYHSSEL-----FPE-RWFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp -----SSEEEEECSCCTT-----SCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -----cCCEEEeCchHhh-----hhh-ccCCEEEEEECCHHHHHHHHHhCC
Confidence 2478888653221 111 126799999999999999999874
No 52
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.62 E-value=5.5e-14 Score=114.64 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=96.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccH-------HHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSD-------EIIFNLLSKR 125 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~-------~~~~~~l~~~ 125 (287)
++.+|+|+|++||||||+++.|+..+|..+++.|++.+.. .+... ..|..+.+ ..+...+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEKM-ASGEPLNDDDRKPWLQALNDAAFAM 76 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHHH-HTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHHh-hcCcCCCccccccHHHHHHHHHHHH
Confidence 5678999999999999999999999999999998764220 00000 01111111 0111222222
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCc
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSI 204 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~ 204 (287)
+.. +..+|+|.......+...+.... ++ .+|||++|++++++|+..|..+
T Consensus 77 ~~~-----~~~~vi~~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~~~~R~~~R~~~----------------------- 127 (175)
T 1knq_A 77 QRT-----NKVSLIVCSALKKHYRDLLREGN-PNLSFIYLKGDFDVIESRLKARKGH----------------------- 127 (175)
T ss_dssp HHH-----CSEEEEECCCCSHHHHHHHHTTC-TTEEEEEEECCHHHHHHHHHTSTTC-----------------------
T ss_pred Hhc-----CCcEEEEeCchHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhccCC-----------------------
Confidence 222 35788884223334444454433 45 7999999999999999987421
Q ss_pred cCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 205 SMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 205 ~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
....+.+..++..+ .+. +|... ..+.||++++++++.++|.+.|..
T Consensus 128 -------------------~~~~~~~~~~~~~~----~~~--~~~~~-~~~~Id~~~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 128 -------------------FFKTQMLVTQFETL----QEP--GADET-DVLVVDIDQPLEGVVASTIEVIKK 173 (175)
T ss_dssp -------------------CCCHHHHHHHHHHC----CCC--CTTCT-TEEEEECSSCHHHHHHHHHHHHHC
T ss_pred -------------------CCchHHHHHHHHhh----hCc--ccCCC-CeEEEeCCCCHHHHHHHHHHHHhc
Confidence 11233444333222 111 13322 357889889999999999988753
No 53
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.61 E-value=4.3e-15 Score=124.94 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH----------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL---------- 121 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~---------- 121 (287)
.++++|+|+|+|||||||+++.|+++++..+++++. +++. ..++..+..+.+++..+..+++.....+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL-LRFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE-EESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE-eeCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999998765555422 1110 1124456667777766555554432211
Q ss_pred -HHHHHHhcccCCCccEEEeCCC-----C-------CHHHHHHHHH-hcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080 122 -LSKRLEAGQAGGESGFILDGFP-----R-------TVKQAEILEE-VMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN 187 (287)
Q Consensus 122 -l~~~l~~~~~~~~~g~Ildg~p-----~-------~~~~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~ 187 (287)
+...+.. +..+|+|.+. . .......+.. ...||++|||++|++++++|+.+| .+
T Consensus 85 ~i~~~l~~-----~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~-~~------ 152 (215)
T 1nn5_A 85 LIKEKLSQ-----GVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG-HE------ 152 (215)
T ss_dssp HHHHHHHT-----TCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC------C------
T ss_pred HHHHHHHC-----CCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC-cc------
Confidence 1222221 3578889432 1 1222221221 135899999999999999999633 11
Q ss_pred cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHH-HHHhhchHHHHHHHhcCcEEEEeCCCCcccH
Q 023080 188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLR-VYNEKSQPVEEFYRNRGKLLEFDLPGGIPES 266 (287)
Q Consensus 188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~-~y~~~~~~~~~~y~~~~~~~~id~~~~~eev 266 (287)
+.+ .. .+.+++. .|..... .+ ...++.||++++++++
T Consensus 153 ----------------------------------~~~-~~-~~~~~~~~~~~~~~~----~~--~~~~~~Id~~~~~e~~ 190 (215)
T 1nn5_A 153 ----------------------------------RYE-NG-AFQERALRCFHQLMK----DT--TLNWKMVDASKSIEAV 190 (215)
T ss_dssp ----------------------------------TTC-SH-HHHHHHHHHHHHHTT----CT--TSCEEEEETTSCHHHH
T ss_pred ----------------------------------ccc-hH-HHHHHHHHHHHHHHH----hC--CCCEEEEECCCCHHHH
Confidence 111 12 2233332 2322111 01 2357889999999999
Q ss_pred HHHHHHHhccc
Q 023080 267 WPKLLEALNLD 277 (287)
Q Consensus 267 ~~~I~~~l~~~ 277 (287)
+++|.+.+...
T Consensus 191 ~~~i~~~l~~~ 201 (215)
T 1nn5_A 191 HEDIRVLSEDA 201 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 54
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.60 E-value=6e-14 Score=117.48 Aligned_cols=173 Identities=15% Similarity=0.129 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCC---cccHHHH---------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGK---LVSDEII--------- 118 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~---~~~~~~~--------- 118 (287)
++++|+|+|+|||||||+++.|+++++.. ++.++. +.+..+.+++..+. .......
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~ 72 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----------NSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFS 72 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----------TCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----------CcHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999874 444210 11222233332211 0111100
Q ss_pred ---HHHHHHHHHhcccCCCccEEEeCCCCCHH-----------HHHHHHH-hcCccEEEEEecCHHHHHHHHh-CCCccc
Q 023080 119 ---FNLLSKRLEAGQAGGESGFILDGFPRTVK-----------QAEILEE-VMDIDLVVNLKLCEDVLLEKCL-GRRMCS 182 (287)
Q Consensus 119 ---~~~l~~~l~~~~~~~~~g~Ildg~p~~~~-----------~~~~l~~-~~~~d~vi~L~~~~e~l~~Rl~-~R~~~~ 182 (287)
...+...+.. +..+|+|+++.+.. ....+.. ...++++|+|++|++++++|+. +|..
T Consensus 73 ~~~~~~i~~~l~~-----g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~-- 145 (213)
T 2plr_A 73 DRYERYILPMLKS-----GFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK-- 145 (213)
T ss_dssp HHHHHTHHHHHHT-----TCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHhC-----CCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc--
Confidence 0111112221 46799999876531 1222222 2248999999999999999998 6641
Q ss_pred cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCC--CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC
Q 023080 183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD--DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP 260 (287)
Q Consensus 183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~--d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~ 260 (287)
+++ |. ++..+..+.+ +..+.+.+|+..++.... +. ..++.||++
T Consensus 146 -~~~-~~-------------------------~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~---~~----~~~~~Id~~ 191 (213)
T 2plr_A 146 -IKP-QE-------------------------AGADIFPGLSPEEGFLKYQGLITEVYDKLV---KD----ENFIVIDGT 191 (213)
T ss_dssp -CCT-TT-------------------------TTTTTCTTSCHHHHHHHHHHHHHHHHHHHT---TT----TTCEEEETT
T ss_pred -ccc-cc-------------------------cccccccccchhhhHHHHHHHHHHHHHHHH---hh----CCEEEEECC
Confidence 011 00 0000111111 111334444444332211 11 146889999
Q ss_pred CCcccHHHHHHHHhcc
Q 023080 261 GGIPESWPKLLEALNL 276 (287)
Q Consensus 261 ~~~eev~~~I~~~l~~ 276 (287)
+++++++++|.+.|..
T Consensus 192 ~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 192 KTPKEIQIQIRKFVGE 207 (213)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998864
No 55
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.60 E-value=6.6e-15 Score=127.57 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=106.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc-CCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ-GKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
+.+|+|+|++||||||+++.|++.+|+.++++|++++.... +..+.+++.. |.....+.....+.......
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~-----g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~--- 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMK-----GTSVAEIFEHFGESVFREKETEALKKLSLMY--- 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHST-----TSCHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhc-----CccHHHHHHHhCcHHHHHHHHHHHHHHHhhc---
Confidence 55799999999999999999999999999999998877431 2223444432 43333344444444444331
Q ss_pred CCccEEEeC--CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC--ccccCCCccccccccccCCCCCCCccCCC
Q 023080 133 GESGFILDG--FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR--MCSQCGGNFNVANINVKGGNGNPSISMAP 208 (287)
Q Consensus 133 ~~~g~Ildg--~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~ 208 (287)
...+|.+| .+........+. .+++|||+++.+++.+|+.++. ..|
T Consensus 120 -~~~Via~GgG~v~~~~~~~~l~----~~~vV~L~a~~e~l~~Rl~~~~~~~Rp-------------------------- 168 (250)
T 3nwj_A 120 -HQVVVSTGGGAVIRPINWKYMH----KGISIWLDVPLEALAHRIAAVGTGSRP-------------------------- 168 (250)
T ss_dssp -SSEEEECCGGGGGSHHHHHHHT----TSEEEEEECCHHHHHHHHHC---------------------------------
T ss_pred -CCcEEecCCCeecCHHHHHHHh----CCcEEEEECCHHHHHHHHhhcCCCCCC--------------------------
Confidence 13455554 555555555553 3789999999999999998632 111
Q ss_pred CCCCccccccccc--CCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEE----------eC-CCCcccHHHHHHHHhc
Q 023080 209 LLPPAHCMSKLIT--RADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEF----------DL-PGGIPESWPKLLEALN 275 (287)
Q Consensus 209 ~~~p~~~~~~L~~--r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~i----------d~-~~~~eev~~~I~~~l~ 275 (287)
|.. +.++..+...+++........+ .|...+.++.+ |. ..+++++.++|.+.+.
T Consensus 169 ----------l~~~~~~~d~~~~~~~~l~~l~~eR~~---lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~ 235 (250)
T 3nwj_A 169 ----------LLHDDESGDTYTAALNRLSTIWDARGE---AYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQ 235 (250)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHH---HHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHH
T ss_pred ----------cccCCCcccchhhHHHHHHHHHHHHHH---HHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHH
Confidence 111 1223333344455554444443 56665555433 43 4699999999999887
Q ss_pred cch
Q 023080 276 LDE 278 (287)
Q Consensus 276 ~~~ 278 (287)
...
T Consensus 236 ~~~ 238 (250)
T 3nwj_A 236 SYL 238 (250)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 56
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.59 E-value=1.9e-14 Score=121.16 Aligned_cols=168 Identities=14% Similarity=0.041 Sum_probs=112.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccH--------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSD-------------- 115 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~-------------- 115 (287)
.-|.|+|.+||||||+++.|++ +|+++|++|.+.++.+..++.....+.+.+..+. .+..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 4689999999999999999998 9999999999999988777777677766654322 2222
Q ss_pred ----HHHHHHHHHHHHhcc-cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccc
Q 023080 116 ----EIIFNLLSKRLEAGQ-AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNV 190 (287)
Q Consensus 116 ----~~~~~~l~~~l~~~~-~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~ 190 (287)
.+++..+...+.... ..+...+|+|. |.-.+.. .+.. .+|.+|++++|+++.++|+++|.
T Consensus 89 ~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~-pLL~E~~-~~~~--~~D~vi~V~ap~e~r~~Rl~~Rd----------- 153 (210)
T 4i1u_A 89 RRLEAITHPLIRAETEREARDAQGPYVIFVV-PLLVESR-NWKA--RCDRVLVVDCPVDTQIARVMQRN----------- 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC-TTCTTCH-HHHH--HCSEEEEEECCHHHHHHHHHHHH-----------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE-ecccccC-Cccc--cCCeEEEEECCHHHHHHHHHhcC-----------
Confidence 234444444433211 11133567775 3322200 1111 27899999999999999999873
Q ss_pred ccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHH
Q 023080 191 ANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPK 269 (287)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~ 269 (287)
..+.+.+.+|++.. .+..+++...+ ++||++ ++++++..+
T Consensus 154 ---------------------------------g~s~eea~~ri~~Q----~~~eek~~~AD--~VIdN~~gsle~l~~q 194 (210)
T 4i1u_A 154 ---------------------------------GFTREQVEAIIARQ----ATREARLAAAD--DVIVNDAATPDALAVQ 194 (210)
T ss_dssp ---------------------------------CCCHHHHHHHHHHS----CCHHHHHHTCS--EEEECSSCCHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHc----CChHHHHHhCC--EEEECCCCCHHHHHHH
Confidence 23456666666543 23344444444 357888 899999999
Q ss_pred HHHHhccc
Q 023080 270 LLEALNLD 277 (287)
Q Consensus 270 I~~~l~~~ 277 (287)
|.+.+...
T Consensus 195 V~~l~~~~ 202 (210)
T 4i1u_A 195 VDALHQRY 202 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887643
No 57
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.58 E-value=9.5e-14 Score=113.79 Aligned_cols=158 Identities=14% Similarity=0.047 Sum_probs=90.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCee-ehhHHHHHHHHcCCchHHHHHHHHhcCCcc----c--HHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHI-ATGDLVREELASSGSLSQQLSEIVNQGKLV----S--DEIIFNLLSKR 125 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i-~~d~llr~~~~~~~~~~~~i~~~l~~g~~~----~--~~~~~~~l~~~ 125 (287)
++++|+|+|+|||||||+++.|++++|.+++ +.+. .+..+.+++..|... . .+.+...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----------~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~ 72 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----------MGQALRKLTPGFSGDPQEHPMWIPLMLDALQYA 72 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----------HHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----------hHHHHHHhCccccchhhhhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999988 4311 122233333221110 0 12234444444
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHH----HHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCC
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAE----ILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGN 201 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~----~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~ 201 (287)
+... +..+|+|+......... .+...+.+-.+|||++|++++++|+..|..
T Consensus 73 l~~~----g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~--------------------- 127 (183)
T 2vli_A 73 SREA----AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ--------------------- 127 (183)
T ss_dssp HHHC----SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC-----------------------
T ss_pred HHhC----CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccc---------------------
Confidence 4432 34678887655543222 232222233569999999999999998741
Q ss_pred CCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhccch
Q 023080 202 PSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNLDE 278 (287)
Q Consensus 202 ~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~~~ 278 (287)
++ ...+.++. +.+...+. . | . + .||++ .++++++++|.+.+....
T Consensus 128 --------------------r~-~~~~~~~~----~~~~~~~~-~-~---~-~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 128 --------------------PQ-VNVGTVED----RLNELRGE-Q-F---Q-T-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp -----------------------CCHHHHHH----HHHHHTSG-G-G---C-S-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred --------------------cc-hhHHHHHH----HHHhhccc-c-c---c-e-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 11 11233332 33322222 2 2 2 3 68887 799999999999997654
No 58
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.58 E-value=1.4e-14 Score=126.16 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=100.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH---hCCCee--ehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF---LGVPHI--ATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLE 127 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~---lg~~~i--~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~ 127 (287)
++++|+|+|+|||||||+++.|++. +|+.++ +.|.+ +..+......+.. .........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~~~~~~e~----------~~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPVWKEKYEE----------FIKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSSCCGGGHH----------HHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhhhhHHHHH----------HHHHHHHHHHHHHhh
Confidence 5778999999999999999999998 788887 77554 3322111110110 011112223333332
Q ss_pred hcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCC
Q 023080 128 AGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPS 203 (287)
Q Consensus 128 ~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~ 203 (287)
. ..+|+|+.+....+...+... +.++++|||++|++++++|+.+|. .
T Consensus 72 ~------~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~-~---------------------- 122 (260)
T 3a4m_A 72 N------YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG-E---------------------- 122 (260)
T ss_dssp T------SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT-C----------------------
T ss_pred C------CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC-C----------------------
Confidence 1 479999977666655555432 457899999999999999998873 0
Q ss_pred ccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCC--CcccHHHHHHHHhccc
Q 023080 204 ISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPG--GIPESWPKLLEALNLD 277 (287)
Q Consensus 204 ~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~--~~eev~~~I~~~l~~~ 277 (287)
....+.++...+.|.. +. ..|......+.||+++ +++++++.|...+...
T Consensus 123 --------------------~~~~~~l~~~~~~~e~---~~-~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 123 --------------------KIPNEVIKKMYEKFDE---PG-KKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp --------------------SSCHHHHHHHHHHCCC---TT-SSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred --------------------CCCHHHHHHHHHHhcC---cc-ccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 1123455544344322 11 1222123357789886 7899999999888754
No 59
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.57 E-value=1e-14 Score=124.02 Aligned_cols=175 Identities=12% Similarity=0.042 Sum_probs=95.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHH-HHHHHHHHhc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIF-NLLSKRLEAG 129 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~-~~l~~~l~~~ 129 (287)
.++++|+|.|++||||||+++.|+++++. ..+++-.+.++ +.+++.++.+++++............ -....+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRREHF 96 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998765 22222000111 34567778888877643223332221 1111221111
Q ss_pred ------ccCCCccEEEeCCC------------CCHHHHHHHHHhc---CccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 130 ------QAGGESGFILDGFP------------RTVKQAEILEEVM---DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 130 ------~~~~~~g~Ildg~p------------~~~~~~~~l~~~~---~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
....+..+|+|-|. ...++...+.... .||++|||++|++++++|+ +|.
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd--------- 166 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN--------- 166 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC---------------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC---------
Confidence 01113567778431 2344444554432 6999999999999999998 331
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCC-CcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRAD-DTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~-d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
|-+ ...+..++-.+.|.+. .+.| ...++.||++++++++
T Consensus 167 ---------------------------------r~E~~~~e~~~rv~~~y~~l----a~~~--~~~~~vIDa~~sieeV- 206 (223)
T 3ld9_A 167 ---------------------------------GYEFADMEFYYRVRDGFYDI----AKKN--PHRCHVITDKSETYDI- 206 (223)
T ss_dssp --------------------------------------CHHHHHHHHHHHHHH----HHHC--TTTEEEEESSCSSSCC-
T ss_pred ---------------------------------ccccchHHHHHHHHHHHHHH----HHHC--CCCEEEEcCCCCHHHH-
Confidence 111 1234444333344332 2223 2468999999999999
Q ss_pred HHHHHHhccch
Q 023080 268 PKLLEALNLDE 278 (287)
Q Consensus 268 ~~I~~~l~~~~ 278 (287)
++|.+.|....
T Consensus 207 ~~I~~~l~~~l 217 (223)
T 3ld9_A 207 DDINFVHLEVI 217 (223)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887544
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.57 E-value=8.1e-15 Score=124.45 Aligned_cols=117 Identities=20% Similarity=0.204 Sum_probs=73.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH----cCCchH--HHHHHHHh-----------------cC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA----SSGSLS--QQLSEIVN-----------------QG 110 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~----~~~~~~--~~i~~~l~-----------------~g 110 (287)
+++|+|+|++||||||+++.|++.+|+++++.|++++.... .+..+. ..+.+... .|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 56899999999999999999999999999999999986542 332221 22222211 12
Q ss_pred CcccHHHH-------------HHHHHHHHHhc--ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 111 KLVSDEII-------------FNLLSKRLEAG--QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 111 ~~~~~~~~-------------~~~l~~~l~~~--~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
..+++.+. ...+...+... ....+.++|+||..... .....++++|||+++.+++++|+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~------~~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT------VVFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc------eEecCCCEEEEEeCCHHHHHHHH
Confidence 22222111 12233333221 11114689999973321 01234789999999999999995
Q ss_pred h
Q 023080 176 L 176 (287)
Q Consensus 176 ~ 176 (287)
.
T Consensus 159 ~ 159 (227)
T 1cke_A 159 M 159 (227)
T ss_dssp H
T ss_pred H
Confidence 4
No 61
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.57 E-value=2.3e-14 Score=117.57 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=72.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
.++.+|+|+|+|||||||+++.|++.+|+.++++|++++.... ....+.. ........+.+...+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--- 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-YDGYDEE-----YDCPILDEDRVVDELDNQMRE--- 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-EEEEETT-----TTEEEECHHHHHHHHHHHHHH---
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-hhhhhhh-----hcCccCChHHHHHHHHHHHhc---
Confidence 3556799999999999999999999999999999998887410 0000000 000112233344444444444
Q ss_pred CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 132 GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 132 ~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.++|+|+.....-. ...++.+|||+++++++++|+.+|+
T Consensus 80 ---g~~vv~~~~~~~~~------~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 ---GGVIVDYHGCDFFP------ERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp ---CCEEEECSCCTTSC------GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred ---CCEEEEechhhhcc------hhcCCEEEEEECCHHHHHHHHHHcC
Confidence 36778764322110 0127899999999999999999874
No 62
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.56 E-value=5e-14 Score=117.29 Aligned_cols=169 Identities=16% Similarity=0.123 Sum_probs=98.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhc---CCcccHHHHH--------
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQ---GKLVSDEIIF-------- 119 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~---g~~~~~~~~~-------- 119 (287)
+.++++|+|+|++||||||+++.|++. |+++++.|++.+... .+.. ..+.+.+.. ...+....+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 457789999999999999999999998 999999999987754 2111 222222210 1112222111
Q ss_pred ----------HHH-HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcc
Q 023080 120 ----------NLL-SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 120 ----------~~l-~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
..+ ...+......++..+|+|+ |..... .+. ..+|.+|||+++++++++|+..|..
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~-~~l~~~--~~~--~~~d~~i~l~~~~e~~~~R~~~R~~-------- 147 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEI-PLLFEK--GWE--GRLHGTLLVAAPLEERVRRVMARSG-------- 147 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEEC-TTTTTT--TCG--GGSSEEEEECCCHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEe-cceecc--Cch--hhCCEEEEEECCHHHHHHHHHHcCC--------
Confidence 111 1112111111135678886 321110 011 1368999999999999999987720
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWP 268 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~ 268 (287)
.+.+.+..++... . +...++...+ +.||++++++++++
T Consensus 148 ------------------------------------~~~~~~~~~i~~~---~-~~~~~~~~ad--~vId~~~~~~~~~~ 185 (203)
T 1uf9_A 148 ------------------------------------LSREEVLARERAQ---M-PEEEKRKRAT--WVLENTGSLEDLER 185 (203)
T ss_dssp ------------------------------------CTTHHHHHHHTTS---C-CHHHHHHHCS--EEECCSSHHHHHHH
T ss_pred ------------------------------------CCHHHHHHHHHHC---C-ChhHHHHhCC--EEEECCCCHHHHHH
Confidence 0112333333321 1 1222233333 36888889999999
Q ss_pred HHHHHhccch
Q 023080 269 KLLEALNLDE 278 (287)
Q Consensus 269 ~I~~~l~~~~ 278 (287)
+|.+.+....
T Consensus 186 ~i~~~~~~~~ 195 (203)
T 1uf9_A 186 ALKAVLAELT 195 (203)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHHHH
Confidence 9999887543
No 63
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.56 E-value=2e-14 Score=120.12 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccHHH------------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSDEI------------ 117 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~~~------------ 117 (287)
++|+|+|++||||||+++.|++ +|++++++|++.++...........+.+.+.... ......
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 9999999999987644332222233333322111 111111
Q ss_pred ------HHHHH----HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCc
Q 023080 118 ------IFNLL----SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGN 187 (287)
Q Consensus 118 ------~~~~l----~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~ 187 (287)
....+ ...+... .++..+|+||....... +. ..++.+|||++|++++++|+..|..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~--~~~~~vive~~~l~~~~---~~--~~~~~~i~l~~~~e~~~~Rl~~R~~------- 146 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL--SEDTLFILEASLLVEKG---TY--KNYDKLIVVYAPYEVCKERAIKRGM------- 146 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS--CTTCCEEEECSCSTTTT---CG--GGSSEEEEECCCHHHHHHHHHHTCC-------
T ss_pred HHHHHhhCHHHHHHHHHHHHhc--cCCCEEEEEccccccCC---ch--hhCCEEEEEECCHHHHHHHHHHcCC-------
Confidence 11111 1111111 10157889984222111 11 1278999999999999999987621
Q ss_pred cccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHH
Q 023080 188 FNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESW 267 (287)
Q Consensus 188 y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~ 267 (287)
+.+.+.++++.+ .+...++...+ +.||++++++++.
T Consensus 147 --------------------------------------~~~~~~~~~~~~----~~~~~~~~~ad--~vId~~~~~~~~~ 182 (204)
T 2if2_A 147 --------------------------------------SEEDFERRWKKQ----MPIEEKVKYAD--YVIDNSGSIEETY 182 (204)
T ss_dssp --------------------------------------CHHHHHHHHTTS----CCHHHHGGGCS--EECCCSSCHHHHH
T ss_pred --------------------------------------CHHHHHHHHHhC----CChhHHHhcCC--EEEECCCCHHHHH
Confidence 123444444332 12233333333 4688889999999
Q ss_pred HHHHHHhccc
Q 023080 268 PKLLEALNLD 277 (287)
Q Consensus 268 ~~I~~~l~~~ 277 (287)
.+|.+.+...
T Consensus 183 ~~i~~~l~~~ 192 (204)
T 2if2_A 183 KQVKKVYEEL 192 (204)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 64
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.56 E-value=5.8e-15 Score=130.88 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=77.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
|++|+|+|+|||||||+++.|++++ |+.++++| .++..+..... +.. ..+...+.....+.+...+...+... ..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 77 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG-DS 77 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC-TT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc-cC
Confidence 4689999999999999999999985 99999997 55654433111 000 00000000011122223333333110 12
Q ss_pred CCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+.++|+||++.+..+...+... +.+..+|||++|.+++++|+.+|.
T Consensus 78 -g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 78 -VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp -CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred -CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 5789999999887766665532 235589999999999999999885
No 65
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.54 E-value=1.5e-14 Score=117.72 Aligned_cols=164 Identities=13% Similarity=0.197 Sum_probs=88.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
+.+|+|+|++||||||+++.|+..++.++++.|++++... +...+..+.. .|..........++.. +..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~---~g~~~~~~~~~~~l~~-l~~----- 72 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDL---EGEEGFRDREEKVINE-LTE----- 72 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHH---HHHHHHHHHHHHHHHH-HHT-----
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHH---HhHHHHHHHHHHHHHH-HHh-----
Confidence 4579999999999999999999999999999988877632 1222211111 0110001111122222 221
Q ss_pred CccEEEe---CCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCC
Q 023080 134 ESGFILD---GFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLL 210 (287)
Q Consensus 134 ~~g~Ild---g~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~ 210 (287)
...+++. |.+........+.. .+++++|+++++++.+|+..|...+
T Consensus 73 ~~~~v~~~~~~~~~~~~~~~~l~~---~~~~i~l~~~~~~l~~R~~~r~~r~---------------------------- 121 (173)
T 1kag_A 73 KQGIVLATGGGSVKSRETRNRLSA---RGVVVYLETTIEKQLARTQRDKKRP---------------------------- 121 (173)
T ss_dssp SSSEEEECCTTGGGSHHHHHHHHH---HSEEEECCCCHHHHHSCC------C----------------------------
T ss_pred CCCeEEECCCeEEecHHHHHHHHh---CCEEEEEeCCHHHHHHHHhCCCCCC----------------------------
Confidence 1355554 34444333344433 4689999999999999998764211
Q ss_pred CCcccccccccCCCCc-HHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCC-CCcccHHHHHHHHhcc
Q 023080 211 PPAHCMSKLITRADDT-EEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLP-GGIPESWPKLLEALNL 276 (287)
Q Consensus 211 ~p~~~~~~L~~r~~d~-~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~-~~~eev~~~I~~~l~~ 276 (287)
+.. .++. .+.+...+.. .. .+|..... +.||++ .++++++++|.+.+..
T Consensus 122 --------~~~-~~~~~~~~~~~~~~~----r~---~~~~~~a~-~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 122 --------LLH-VETPPREVLEALANE----RN---PLYEEIAD-VTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp --------CSS-SSCCCHHHHHHHHHH----HH---HHHHHHCS-EEC-----CHHHHHHHHHHHHC-
T ss_pred --------CCC-CCCchHHHHHHHHHH----HH---HHHHhhCC-EEEECCCCCHHHHHHHHHHHHHh
Confidence 001 1222 4444433222 12 23444333 567876 7999999999988753
No 66
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.53 E-value=1.1e-13 Score=117.18 Aligned_cols=178 Identities=16% Similarity=0.076 Sum_probs=105.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cccHHHH-HHHHHHHHHh-
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LVSDEII-FNLLSKRLEA- 128 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~~~~~~-~~~l~~~l~~- 128 (287)
.++++|+|.|++||||||+++.|+++++..+.-+ ++ ...++++|+.+++++..+. ....... .-....+...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~----~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL----KF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE----ES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcccceEE----Ee-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998733222 22 1246778889999887643 2322221 1111111110
Q ss_pred ----cccCCCccEEEeCCCCC-----------HHHHHHHHHh----cCccEEEEE-ecCHHHHHHHHhCCCccccCCCcc
Q 023080 129 ----GQAGGESGFILDGFPRT-----------VKQAEILEEV----MDIDLVVNL-KLCEDVLLEKCLGRRMCSQCGGNF 188 (287)
Q Consensus 129 ----~~~~~~~g~Ildg~p~~-----------~~~~~~l~~~----~~~d~vi~L-~~~~e~l~~Rl~~R~~~~~~g~~y 188 (287)
+....+..+|+|-|.-+ ......+..+ ..||++||| ++|++++++|+..+. +
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~-d------- 149 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD-E------- 149 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC-C-------
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc-c-------
Confidence 00011456788843111 0112233322 359999999 999999988864321 1
Q ss_pred ccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEe-CCCCcccHH
Q 023080 189 NVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFD-LPGGIPESW 267 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id-~~~~~eev~ 267 (287)
|-+ ..+..++-.+.|.+....... .....++.|| +++++++|+
T Consensus 150 ---------------------------------r~E-~~~f~~rvr~~Y~~la~~~~~--~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 150 ---------------------------------RYE-TVKFQEKVKQTFMKLLDKEIR--KGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp ---------------------------------TTC-CHHHHHHHHHHHHHHHHHHHH--TTCCSEEEEECTTCCHHHHH
T ss_pred ---------------------------------ccc-HHHHHHHHHHHHHHHHHhccc--cCCCCEEEEeCCCCCHHHHH
Confidence 111 234443333334443322111 1245689999 999999999
Q ss_pred HHHHHHhccch
Q 023080 268 PKLLEALNLDE 278 (287)
Q Consensus 268 ~~I~~~l~~~~ 278 (287)
++|.+.|....
T Consensus 194 ~~I~~~i~~~l 204 (216)
T 3tmk_A 194 ALIWQIVEPVL 204 (216)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 67
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.53 E-value=1.3e-13 Score=114.80 Aligned_cols=169 Identities=15% Similarity=0.110 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh--cccC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA--GQAG 132 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~--~~~~ 132 (287)
++|+|+|+|||||||+++.|+++++..++.-.. .+... +..++..+...+.......+..++.. ....
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~-------~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 70 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFKEPV-------EENPY---FEQYYKDLKKTVFKMQIYMLTARSKQLKQAKN 70 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEECCCG-------GGCTT---HHHHTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEcccc-------cccHH---HHHHHhCccccchhHHHHHHHHHHHHHHHhhc
Confidence 479999999999999999999999987764210 00000 11111110000111111112222221 1111
Q ss_pred CCccEEEeCCCCCHHH---------------HH----HHH----Hh-------cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 133 GESGFILDGFPRTVKQ---------------AE----ILE----EV-------MDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~---------------~~----~l~----~~-------~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
...+|+|.++.+..- .. .+. .+ ..++.+|||++|++++++|+.+|...
T Consensus 71 -~~~vi~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~L~~~~e~~~~Rl~~R~r~- 148 (205)
T 2jaq_A 71 -LENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLENLKIPENKLSFDIVIYLRVSTKTAISRIKKRGRS- 148 (205)
T ss_dssp ---CEEEESCTTTHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTC------CCCCSEEEEEECCHHHHHHHHHHHTCH-
T ss_pred -cCCEEEEeccchhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhcccccCCCCCEEEEEeCCHHHHHHHHHHcCCh-
Confidence 235999987653110 00 011 11 35889999999999999999876310
Q ss_pred cCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCC
Q 023080 183 QCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGG 262 (287)
Q Consensus 183 ~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~ 262 (287)
+. . ..+. .+.+++..+.. .+.+.|......+.||++++
T Consensus 149 -----~~-------------------------------~--~~~~-~~~~~l~~~~~---~~~~~~~~~~~~~~Id~~~~ 186 (205)
T 2jaq_A 149 -----EE-------------------------------L--LIGE-EYWETLNKNYE---EFYKQNVYDFPFFVVDAELD 186 (205)
T ss_dssp -----HH-------------------------------H--HSCH-HHHHHHHHHHH---HHHHHHTTTSCEEEEETTSC
T ss_pred -----hh-------------------------------h--cCcH-HHHHHHHHHHH---HHHHHccccCcEEEEECCCC
Confidence 00 0 0011 23334443333 23445542345688999999
Q ss_pred cccHHHHHHHHhccc
Q 023080 263 IPESWPKLLEALNLD 277 (287)
Q Consensus 263 ~eev~~~I~~~l~~~ 277 (287)
+++++++|.+.+..-
T Consensus 187 ~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 187 VKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988643
No 68
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.50 E-value=6.5e-13 Score=110.91 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=96.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH----cCCch--HHHHHHHHh-----------------cCCc
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA----SSGSL--SQQLSEIVN-----------------QGKL 112 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~----~~~~~--~~~i~~~l~-----------------~g~~ 112 (287)
+|+|+|++||||||+++.|++.+|+++++.|++.+.... .+... ...+...+. .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 799999999999999999999999999999998876532 12111 112222111 1221
Q ss_pred ccH----HH-------------HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 113 VSD----EI-------------IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 113 ~~~----~~-------------~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
+.. .. +...+...+.... .++|+||..... .....++++|||++|++++++|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~vi~g~~~~~------~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP----PPFVAEGRDMGT------AVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC----SCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc----CCEEEEccceeE------EEecCCcEEEEEECCHHHHHHHH
Confidence 111 11 1111222222221 489999864330 01123789999999999999999
Q ss_pred hCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEE
Q 023080 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLL 255 (287)
Q Consensus 176 ~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~ 255 (287)
..|.. .+.+.+.+++........+ ++......+
T Consensus 154 ~~r~~--------------------------------------------~~~~~~~~~~~~R~~~~~~---~~~~~ad~~ 186 (208)
T 3ake_A 154 ARERP--------------------------------------------QAYEEVLRDLLRRDERDKA---QSAPAPDAL 186 (208)
T ss_dssp HHTSS--------------------------------------------SCHHHHHHHHHHHHHTC-----CCCCCTTCE
T ss_pred Hhhcc--------------------------------------------cCHHHHHHHHHHHHHHHhh---cccCCCCEE
Confidence 87631 1223444444432111110 002223457
Q ss_pred EEeCCC-CcccHHHHHHHHhc
Q 023080 256 EFDLPG-GIPESWPKLLEALN 275 (287)
Q Consensus 256 ~id~~~-~~eev~~~I~~~l~ 275 (287)
.||+++ +++++.++|.+.++
T Consensus 187 ~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 187 VLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp EEETTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHh
Confidence 799886 99999999988774
No 69
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.48 E-value=7.5e-13 Score=110.88 Aligned_cols=170 Identities=15% Similarity=0.141 Sum_probs=98.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC----chHHHHHHHHhcCCcccHH------
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG----SLSQQLSEIVNQGKLVSDE------ 116 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~----~~~~~i~~~l~~g~~~~~~------ 116 (287)
+.++..|+|+|||||||||+++.|++.++. ...++.++.|..... +. .....+...+.+|.++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 356778999999999999999999998853 223222222221000 00 0012233333444332210
Q ss_pred --HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEe-cCHHHHHHHHhCCCccccCCCccccc
Q 023080 117 --IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVA 191 (287)
Q Consensus 117 --~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~ 191 (287)
.....+...+.. +..+|+|+.+.... .+..... ..++|||+ ++.+++.+|+..|.
T Consensus 89 ~~~~~~~i~~~l~~-----g~~vi~d~~~~~~~---~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~------------ 148 (204)
T 2qor_A 89 YGTLKSEYDLAVGE-----GKICLFEMNINGVK---QLKESKHIQDGIYIFVKPPSIDILLGRLKNRN------------ 148 (204)
T ss_dssp EEEEHHHHHHHHHT-----TCEEEEECCHHHHH---HHHHCSSCSCCEEEEEECSCHHHHHHHHHTCT------------
T ss_pred ecCCHHHHHHHHHc-----CCeEEEEECHHHHH---HHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcC------------
Confidence 001233333443 46899998654433 3333222 23789998 99999999998874
Q ss_pred cccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHH
Q 023080 192 NINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLL 271 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~ 271 (287)
.++.+.+++|+..++....+. |.....++ |+++ ++++++++|.
T Consensus 149 --------------------------------~~~~~~i~~rl~~~~~~~~~~---~~~~~d~v-i~n~-~~e~~~~~i~ 191 (204)
T 2qor_A 149 --------------------------------TEKPEEINKRMQELTREMDEA---DKVGFNYF-IVND-DLARTYAELR 191 (204)
T ss_dssp --------------------------------TSCHHHHHHHHHHHHHHHHHH---HHHTCSEE-EECS-SHHHHHHHHH
T ss_pred --------------------------------CCCHHHHHHHHHHHHHHHHHh---hhccCcEE-EECc-CHHHHHHHHH
Confidence 234577888887765433221 33333344 4444 8999999999
Q ss_pred HHhccc
Q 023080 272 EALNLD 277 (287)
Q Consensus 272 ~~l~~~ 277 (287)
+.|...
T Consensus 192 ~~i~~~ 197 (204)
T 2qor_A 192 EYLLGS 197 (204)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 70
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.46 E-value=1.7e-13 Score=118.74 Aligned_cols=115 Identities=16% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC----------eeehhHHHHHHHHcCCchHHHHHHHHhcCCc-------cc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP----------HIATGDLVREELASSGSLSQQLSEIVNQGKL-------VS 114 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~----------~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~-------~~ 114 (287)
.++++|+|+|++||||||+|+.|++.+|++ ++++|++.+.. ....+.. ...|.. ..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~------~~~~~~~-~~~g~~~f~~~~~~d 92 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVL------TSEQKAK-ALKGQFNFDHPDAFD 92 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCC------CHHHHHH-HHTTCSCTTSGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccccc------Chhhhhh-hccCCCCCCCcchhh
Confidence 366889999999999999999999999987 79999987531 1111111 111211 11
Q ss_pred HHHHHHHHHHHHHhcc--------------------cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHH
Q 023080 115 DEIIFNLLSKRLEAGQ--------------------AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEK 174 (287)
Q Consensus 115 ~~~~~~~l~~~l~~~~--------------------~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~R 174 (287)
.+.+...+.... .+. ......+|+||.+..... .+.. .+|.+|||+++++++++|
T Consensus 93 ~~~l~~~L~~l~-~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~--~~d~vi~l~~~~e~~~~R 167 (252)
T 1uj2_A 93 NELILKTLKEIT-EGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD--LFQMKLFVDTDADTRLSR 167 (252)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH--HCSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH--hcCeeEEEeCCHHHHHHH
Confidence 222233333322 110 011357999996543111 1222 257999999999999999
Q ss_pred HhCC
Q 023080 175 CLGR 178 (287)
Q Consensus 175 l~~R 178 (287)
+..|
T Consensus 168 ~~~R 171 (252)
T 1uj2_A 168 RVLR 171 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 71
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.45 E-value=4.1e-14 Score=118.72 Aligned_cols=174 Identities=15% Similarity=0.095 Sum_probs=101.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHHcCCchHHHHHHHHhc-C--CcccHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELASSGSLSQQLSEIVNQ-G--KLVSDEIIFNLLSK 124 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~-g--~~~~~~~~~~~l~~ 124 (287)
+...++.+|+|+|++||||||+++.|++.+ ++.+++.|+++...-. . .... ..+.. . ..+....+...+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~-~~~~---~~~~~~~~~~~~~~~~l~~~i~~ 90 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-I-ETDK---NGFLQYDVLEALNMEKMMSAISC 90 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-S-CBCT---TSCBCCSSGGGBCHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-h-hccc---cCCChhHHHHHhHHHHHHHHHHH
Confidence 334467789999999999999999999988 8999999887653110 0 0000 00000 0 00112223333333
Q ss_pred HHHhc---cc-------CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 125 RLEAG---QA-------GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 125 ~l~~~---~~-------~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
.+... .. .....+|+||++.... +.+ ...+|.+||++++++++.+|+..|....
T Consensus 91 ~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~~--~~~--~~~~d~~i~l~~~~~~~~~R~~~R~~~~------------ 154 (207)
T 2qt1_A 91 WMESARHSVVSTDQESAEEIPILIIEGFLLFNY--KPL--DTIWNRSYFLTIPYEECKRRRSTRVYQP------------ 154 (207)
T ss_dssp HHHHHTTSSCCC-----CCCCEEEEECTTCTTC--GGG--TTTCSEEEEEECCHHHHHHHHHHSCCSS------------
T ss_pred HHhCCCCCCcCCCeeecCCCCEEEEeehHHcCc--HHH--HHhcCeeEEEECCHHHHHHHHHHcCCCc------------
Confidence 22221 00 0135789999654321 111 1347899999999999999997763211
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH-HHHHHHHhhchHHHHHHHhc-CcEEEEeCCCCcccHHHHHHH
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK-ERLRVYNEKSQPVEEFYRNR-GKLLEFDLPGGIPESWPKLLE 272 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~-~rl~~y~~~~~~~~~~y~~~-~~~~~id~~~~~eev~~~I~~ 272 (287)
++..+.+. .....| ....+.+... +.++.||+++++++++++|.+
T Consensus 155 -----------------------------e~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~ 201 (207)
T 2qt1_A 155 -----------------------------PDSPGYFDGHVWPMY----LKYRQEMQDITWEVVYLDGTKSEEDLFLQVYE 201 (207)
T ss_dssp -----------------------------CCCTTHHHHTHHHHH----HHHHHHGGGCSSCCEEEETTSCHHHHHHHHHH
T ss_pred -----------------------------cchHHHHHHHHhHHH----HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHH
Confidence 11111121 111222 2233344443 567889999999999999999
Q ss_pred Hhcc
Q 023080 273 ALNL 276 (287)
Q Consensus 273 ~l~~ 276 (287)
.|..
T Consensus 202 ~l~~ 205 (207)
T 2qt1_A 202 DLIQ 205 (207)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8864
No 72
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.45 E-value=5e-13 Score=114.52 Aligned_cols=42 Identities=29% Similarity=0.369 Sum_probs=38.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
+.++.+|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 456778999999999999999999999999999999999864
No 73
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.44 E-value=1.2e-13 Score=120.43 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCCee
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL-GVPHI 83 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i 83 (287)
+..++++|+|.|++||||||+++.|++.+ +..++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34578899999999999999999999998 55555
No 74
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.44 E-value=3e-13 Score=114.26 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=99.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH----HHcCCchHHHHHHH-------H-----------hcCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE----LASSGSLSQQLSEI-------V-----------NQGK 111 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~----~~~~~~~~~~i~~~-------l-----------~~g~ 111 (287)
|++|+|+|++||||||+++.|++.+|+++++.|++++.. ...+. +..+.++ + ..|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~ 80 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK--TEDFAKLVDQTTLDLTYKADKGQCVILDNE 80 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS--CSCHHHHHHTCCEEEEECTTCCEEEEETTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh--hHHHHHHHHhccccccccccccceEEeCCc
Confidence 568999999999999999999999999999999998864 22222 2233333 1 1232
Q ss_pred cccHH----HHH---------HHHHHHHHh---cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 112 LVSDE----IIF---------NLLSKRLEA---GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 112 ~~~~~----~~~---------~~l~~~l~~---~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
..... .+. ..+.+.+.. .... +.++|++|--... .....++++|||++|++++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~-~~~~vi~g~~~~~------~~~~~~~~vi~l~a~~e~~~~R~ 153 (219)
T 2h92_A 81 DVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAA-EKGIVMDGRDIGT------VVLPDADLKVYMIASVEERAERR 153 (219)
T ss_dssp ECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHT-TCCEEEEESSCCC------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred cchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhcc-CCcEEEEcCCccc------eecCCCCEEEEEECCHHHHHHHH
Confidence 21111 111 111111110 0111 3589999842110 01123679999999999999997
Q ss_pred hCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCC-CCcHHHHHHHHHHHH--hhchHHHHHHHhcC
Q 023080 176 LGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRA-DDTEEVVKERLRVYN--EKSQPVEEFYRNRG 252 (287)
Q Consensus 176 ~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~-~d~~~~i~~rl~~y~--~~~~~~~~~y~~~~ 252 (287)
..+.. .|+ .++.+.+.+++.... .....+..+|.. .
T Consensus 154 ~~~~~----------------------------------------~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~ 192 (219)
T 2h92_A 154 YKDNQ----------------------------------------LRGIESNFEDLKRDIEARDQYDMNREISPLRKA-D 192 (219)
T ss_dssp HHHHH----------------------------------------HTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCC-T
T ss_pred HHHHH----------------------------------------hcCcccCHHHHHHHHHHHHHhhhhhhccccccC-C
Confidence 53200 011 124555666654321 111111123332 2
Q ss_pred cEEEEeCCC-CcccHHHHHHHHhcc
Q 023080 253 KLLEFDLPG-GIPESWPKLLEALNL 276 (287)
Q Consensus 253 ~~~~id~~~-~~eev~~~I~~~l~~ 276 (287)
..+.||+++ ++++++++|.+.+..
T Consensus 193 d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 193 DAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp TCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhc
Confidence 346788774 999999999998863
No 75
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.41 E-value=7.7e-12 Score=106.41 Aligned_cols=174 Identities=15% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC---------------------
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG--------------------- 110 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g--------------------- 110 (287)
..+++|.|.|++||||||+++.||+++|+++++ .++++......+.....+...-+..
T Consensus 12 ~~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~ 90 (223)
T 3hdt_A 12 NKNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHSKPS 90 (223)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHCC-----------------------------------
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhcccccccccccc
Confidence 356789999999999999999999999999999 5777775544322111111111100
Q ss_pred ---CcccHHHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHH--HhcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080 111 ---KLVSDEIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILE--EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG 185 (287)
Q Consensus 111 ---~~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~--~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g 185 (287)
....++.+.....+.+..... ..++|++|.-.. -.+. .-..-.++|||++|.+++.+|+.++.
T Consensus 91 ~~~~~~~~~~~f~~~~~~i~~la~--~~~~Vi~Grggg----~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~~------ 158 (223)
T 3hdt_A 91 PNDKLTSPENLFKFQSEVMRELAE--SEPCIFVGRAAG----YVLDQDEDIERLIRIFVYTDKVKKVQRVMEVD------ 158 (223)
T ss_dssp -------HHHHHHHHHHHHHHHHH--HSCEEEESTTHH----HHHHHCTTCCEEEEEEEECCHHHHHHHHHHHH------
T ss_pred cccccccHHHHHHHHHHHHHHHHh--CCCEEEEeCCcc----hhcccccCCCCeEEEEEECCHHHHHHHHHHhc------
Confidence 000111122222222222211 146888875222 1121 11112478999999999999997652
Q ss_pred CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHH-------hcCcEEEEe
Q 023080 186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYR-------NRGKLLEFD 258 (287)
Q Consensus 186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~-------~~~~~~~id 258 (287)
.-+.+...+++....+...+...+|. .... +.||
T Consensus 159 --------------------------------------~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~d-l~Id 199 (223)
T 3hdt_A 159 --------------------------------------CIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYD-LPIN 199 (223)
T ss_dssp --------------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCS-EEEE
T ss_pred --------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCe-EEEE
Confidence 01123344444444444444333331 1123 4577
Q ss_pred CC-CCcccHHHHHHHHhccc
Q 023080 259 LP-GGIPESWPKLLEALNLD 277 (287)
Q Consensus 259 ~~-~~~eev~~~I~~~l~~~ 277 (287)
++ .+++++++.|...++..
T Consensus 200 T~~l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 200 TTKLTLEETAELIKAYIRLK 219 (223)
T ss_dssp CTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 65 59999999999988743
No 76
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.40 E-value=5.1e-12 Score=109.45 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
.++.+|+|.|++||||||+++.|+++||+.+++.|.+++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~ 65 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVL 65 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHh
Confidence 45678999999999999999999999999999999998664
No 77
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.40 E-value=1.1e-12 Score=109.18 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcC----CcccH-------------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQG----KLVSD------------- 115 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g----~~~~~------------- 115 (287)
..++|+|+|++||||||+++.|++.+|++++++|++.++.... ....+.+.+... ..+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~---~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE---VKEKLVELFGGSVLEDGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---THHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH---HHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHH
Confidence 4578999999999999999999999999999999999886653 222222222210 01111
Q ss_pred -----HHHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHH
Q 023080 116 -----EIIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 116 -----~~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl 175 (287)
.+....+...+.......+..+|+|+ |...+. .+. ..+|.+||+++|+++.++|+
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~-pll~e~--~~~--~~~d~vi~v~a~~e~r~~Rl 147 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINKTSGLIVIEA-ALLKRM--GLD--QLCDHVITVVASRETILKRN 147 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-TTTTTT--TGG--GGCSEEEEEECCHHHHHHHC
T ss_pred HHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE-eceeec--ChH--HhCCEEEEEECCHHHHHHHH
Confidence 12222222222211100024577775 432221 111 13689999999999999998
No 78
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.40 E-value=6.6e-12 Score=105.16 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-cc------------cHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGK-LV------------SDEIIFN 120 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-~~------------~~~~~~~ 120 (287)
.++|.|.|++||||||+++.||+++|+++++ +++++......+.....+...-+... +. ..+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI 84 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence 4589999999999999999999999999999 78876532221111111111111000 00 0001112
Q ss_pred HHHHHHHhccc-CCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 121 LLSKRLEAGQA-GGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 121 ~l~~~l~~~~~-~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
...+.+..... . ..++|++|.-.+ -.+.. ..-.+.|||++|.+++.+|+.++
T Consensus 85 ~~~~~i~~la~~~-~~~~Vi~Gr~g~----~vl~~-~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 85 RQFNFIRKKANEE-KESFVIVGRCAE----EILSD-NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHTS-CCCEEEESTTHH----HHTTT-CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEECCcc----hhcCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence 22222222210 1 257888874211 01111 01247899999999999999765
No 79
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.39 E-value=5.3e-13 Score=112.36 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=62.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehhHHHHHHHHcCCchH-HHHHHHHhcCCcccHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG------VPHIATGDLVREELASSGSLS-QQLSEIVNQGKLVSDEIIFNLLSK 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg------~~~i~~d~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~~~~~l~~ 124 (287)
.++++|+|+|++||||||+++.|++.++ +.+++.|. ++..+.....+. ..-...+ ..+...+..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~-~r~~l~~~~~~~~~~r~~~~--------~~~~~~~~~ 93 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGLNKDLGFSEADRNENI--------RRIAEVAKL 93 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTTTTTCCSSHHHHHHHH--------HHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH-HhhhhccccCCCHHHHHHHH--------HHHHHHHHH
Confidence 3578899999999999999999999886 66777543 333221110000 0000000 001111222
Q ss_pred HHHhcccCCCccEEEeCCCCC-HHHHHHHHHh----------cCccEEEEEecCHHHHHHHH
Q 023080 125 RLEAGQAGGESGFILDGFPRT-VKQAEILEEV----------MDIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~-~~~~~~l~~~----------~~~d~vi~L~~~~e~l~~Rl 175 (287)
.+.. +..+|+| +... ....+.+... ..|+++|||++|++++.+|+
T Consensus 94 ~l~~-----g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 94 FADS-----NSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHT-----TCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHC-----CCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 2322 3568888 4431 1223333321 24689999999999999885
No 80
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.36 E-value=9.9e-12 Score=101.25 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCee--ehhHHHHHHHHcCC--chHHHHHHHHhcCCcc-c---HHHH---HHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHI--ATGDLVREELASSG--SLSQQLSEIVNQGKLV-S---DEII---FNLL 122 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i--~~d~llr~~~~~~~--~~~~~i~~~l~~g~~~-~---~~~~---~~~l 122 (287)
++.|+|+|+|||||||+++.|+++++..++ ++|++......... ..+..+. ..+... . .... ...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEGV 79 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHHH
Confidence 468999999999999999999999987665 47665443111000 0000000 000000 0 0111 1112
Q ss_pred HHHHHhcccCCCccEEEeCCCC-CHHHH-HHHHHhcC-ccEEEEEecCHHHHHHHHhCCC
Q 023080 123 SKRLEAGQAGGESGFILDGFPR-TVKQA-EILEEVMD-IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~-~~~~~-~~l~~~~~-~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...+.. +..+|+|+... ..... ...+.+.. +..+|||+++.+++.+|+..|.
T Consensus 80 ~~~~~~-----g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 80 VAMARA-----GARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHT-----TCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHhc-----CCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 222221 35689998543 22212 22222222 3367899999999999998874
No 81
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.33 E-value=5.8e-12 Score=103.67 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHH--HHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNL--LSK 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~--l~~ 124 (287)
.++.+|+|+|+|||||||+++.|++.++ +.+++.|. ++..+.....+...-. ...+..+ +..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~r----------~~~~~~~~~~~~ 79 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGAGFTREER----------LRHLKRIAWIAR 79 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTCCCCHHHH----------HHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhccCCChhhH----------HHHHHHHHHHHH
Confidence 4678999999999999999999999885 34566644 3432221100000000 0011111 111
Q ss_pred HHHhcccCCCccEEEeCCCCCHHHHHHHH----HhcCccEEEEEecCHHHHHHHHh
Q 023080 125 RLEAGQAGGESGFILDGFPRTVKQAEILE----EVMDIDLVVNLKLCEDVLLEKCL 176 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~~~~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~ 176 (287)
.+... +..+|+|++.........+. ..+.++++|||++|++++.+|+.
T Consensus 80 ~~~~~----g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 80 LLARN----GVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHTT----TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred HHHhC----CCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 11111 23466677544333222222 22347899999999999999974
No 82
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.30 E-value=7.7e-11 Score=104.01 Aligned_cols=119 Identities=12% Similarity=0.109 Sum_probs=73.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCCeeehhHHHHHHHHcCCchHHHHHHHHhcCC-----cccHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL--GVPHIATGDLVREELASSGSLSQQLSEIVNQGK-----LVSDEIIFNLLS 123 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l--g~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~-----~~~~~~~~~~l~ 123 (287)
..+|..|+|+|||||||||+++.|++++ +..+|+.|. ++..... ....+.. +.... .....+....+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~-~R~~~~~---~~~~~~~-~~~~a~~~~~~~~~~~~~~~v~ 104 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT-FKQQHPN---FDELVKL-YEKDVVKHVTPYSNRMTEAIIS 104 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH-HHTTSTT---HHHHHHH-HGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH-hHHhchh---hHHHHHH-ccchhhhhhhHHHHHHHHHHHH
Confidence 3467899999999999999999999998 788899854 4431111 1111111 11100 011122223344
Q ss_pred HHHHhcccCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHH----HHHHhCCC
Q 023080 124 KRLEAGQAGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVL----LEKCLGRR 179 (287)
Q Consensus 124 ~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l----~~Rl~~R~ 179 (287)
..+.. +..+|+|+...+..+...+.. .+.+..++++.+|++++ .+|+..|.
T Consensus 105 ~~l~~-----g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 105 RLSDQ-----GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHHH-----TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHhc-----CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 44443 368999998888665444322 23344578999999999 88886653
No 83
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.26 E-value=5.8e-12 Score=107.51 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=37.7
Q ss_pred CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHH
Q 023080 157 DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRV 236 (287)
Q Consensus 157 ~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~ 236 (287)
.||++|||++|++++++|+.+|.... .+ ... ..+.+|+..
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~--------------------------------------e~-~~~-~~~~~rv~~ 185 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQRARSE--------------------------------------ES-CVP-LKYLQELHE 185 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGG--------------------------------------GT-TCC-HHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCcc--------------------------------------cc-cCc-HHHHHHHHH
Confidence 49999999999999999998663100 00 111 134445554
Q ss_pred HHhhchHHHHHH-HhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 237 YNEKSQPVEEFY-RNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 237 y~~~~~~~~~~y-~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
++.... ..|+ ...+.++.||+++++++++++|.+.+...
T Consensus 186 ~~~~~~--~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~~ 225 (230)
T 2vp4_A 186 LHEDWL--IHQRRPQSCKVLVLDADLNLENIGTEYQRSESSI 225 (230)
T ss_dssp HHHHHH--TSCCSSCCCEEEEEECCC----------------
T ss_pred HHHHHH--HHhcccCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 433221 1111 33456889999999999999999988643
No 84
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.24 E-value=1.9e-11 Score=105.80 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHHHHHHHc----CCchHHHHHHHHhcCCcccHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLVREELAS----SGSLSQQLSEIVNQGKLVSDEIIFNLLSK 124 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~llr~~~~~----~~~~~~~i~~~l~~g~~~~~~~~~~~l~~ 124 (287)
..+|..|+|+|+|||||||+++.|++.++ ..+++.|. ++..+.. ....+..+.++... .....+..++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~-~r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS-FRSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG-GGTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH-HHHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHH
Confidence 44678999999999999999999999986 45667654 3331110 00111111111110 001122222222
Q ss_pred HHHhcccCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCC
Q 023080 125 RLEAGQAGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.+.. +.+||+||++.+..+...+.. .+.+-.++++++|.+++.+|+..|.
T Consensus 105 ~~~~-----g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSSL-----GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHT-----TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhc-----CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 2222 358999999887665443332 2333346788999999999998774
No 85
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.24 E-value=2.1e-10 Score=97.98 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=36.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREE 92 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~ 92 (287)
+..|++|+|.||+||||||+++.|++++|+.+++.|.+.+..
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~ 47 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIA 47 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHH
Confidence 346789999999999999999999999999999999998774
No 86
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.23 E-value=5.4e-11 Score=97.19 Aligned_cols=111 Identities=19% Similarity=0.211 Sum_probs=62.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehh-HHHHHHHHcC-CchHHHHHHHHhcCCcccHHHHHHHH--HH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATG-DLVREELASS-GSLSQQLSEIVNQGKLVSDEIIFNLL--SK 124 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d-~llr~~~~~~-~~~~~~i~~~l~~g~~~~~~~~~~~l--~~ 124 (287)
.++.+|+|+|++||||||+++.|++.+ |++++.++ +.++..+... ...... ..+.+..+. ..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 71 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED-----------REENVRRIAEVAK 71 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHH-----------HHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhcccccccc-----------HHHHHHHHHHHHH
Confidence 357889999999999999999999998 98887553 3333211110 000000 011111111 11
Q ss_pred HHHhcccCCCccEEEeCCCCC----HHHHHHH-HHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 125 RLEAGQAGGESGFILDGFPRT----VKQAEIL-EEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 125 ~l~~~~~~~~~g~Ildg~p~~----~~~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
.+... ..+++.++... ......+ ...+.|+.+|||++|++++++|+.++
T Consensus 72 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 72 LFADA-----GLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHT-----TCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHC-----CCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 12121 13444444322 1221222 22345789999999999999998654
No 87
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.22 E-value=6.3e-11 Score=109.90 Aligned_cols=101 Identities=17% Similarity=0.079 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
...+.+|+|+|+|||||||+++.|++.+++.+++.|++ + . .......+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~-------~----------------~~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G-------S----------------WQRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C-------S----------------HHHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH-H-------H----------------HHHHHHHHHHHHhc--
Confidence 34677899999999999999999999999999999775 0 0 11122233333443
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCc
Q 023080 131 AGGESGFILDGFPRTVKQAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRM 180 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~ 180 (287)
+..+|+|+......+...+.. .+.+..+|+|+++.+++++|+..|..
T Consensus 309 ---g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 ---GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp ---TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred ---CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 368999998877766655433 23355789999999999999998853
No 88
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.21 E-value=2.3e-10 Score=98.14 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+|++|+|.|++||||||+++.|+++++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999993
No 89
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.13 E-value=6.3e-11 Score=98.58 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=87.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccH--------HH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSD--------EI 117 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~--------~~ 117 (287)
++.+|+|+||+||||||+++.|+..++...++..++.+.... .+. .....+......+.+... ..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 566899999999999999999998764333322111111000 000 000112222211111000 00
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG 197 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 197 (287)
....+...+.. +..+|+|+.+....+.. .....+..++.+..+.+++.+|+.+|.
T Consensus 86 ~~~~i~~~l~~-----g~~vi~d~~~~~~~~~~--~~~~~~~~v~~~~~~~e~l~~Rl~~R~------------------ 140 (205)
T 3tr0_A 86 EKDWVLRQLKA-----GRDVLLEIDWQGARQIR--ELFPPALSIFILPPSIEALRERLIKRR------------------ 140 (205)
T ss_dssp EHHHHHHHHHT-----TCEEEEECCHHHHHHHH--HHCTTCEEEEEECSCHHHHHHHHHTCT------------------
T ss_pred hHHHHHHHHHc-----CCeEEEEECHHHHHHHH--HhCCCcEEEEEECcCHHHHHHHHHHhC------------------
Confidence 01123333333 35788887544433322 222233334444456999999999884
Q ss_pred CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
.++.+.++.|+..+... .+++...+ ++.+ ++ ++++++++|.++|...
T Consensus 141 --------------------------~~~~~~i~~rl~~~~~~----~~~~~~~d-~vi~-n~-~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 141 --------------------------QDDTAIIEQRLALAREE----MAHYKEFD-YLVV-ND-NFDQAVQNLIHIISAE 187 (205)
T ss_dssp --------------------------TSCSSTHHHHHHHHHHH----HTTGGGCS-EEEE-CS-SHHHHHHHHHHHHHHH
T ss_pred --------------------------CCCHHHHHHHHHHHHHH----HhcccCCC-EEEE-CC-CHHHHHHHHHHHHHHH
Confidence 22334566777776443 23343333 3334 34 8999999999998753
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.13 E-value=4.6e-10 Score=108.41 Aligned_cols=113 Identities=21% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCCeeehh-HHHHHHHHcCCchH-HHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVPHIATG-DLVREELASSGSLS-QQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~~i~~d-~llr~~~~~~~~~~-~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
+.++++|+|+|+|||||||+++.|++++ |..++.+| +.++..+.....+. ..-.+.+. . +..++...
T Consensus 49 ~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r-------~-i~eva~~~ 120 (630)
T 1x6v_B 49 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVR-------R-IAEVAKLF 120 (630)
T ss_dssp SCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHH-------H-HHHHHHHH
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHH-------H-HHHHHHHH
Confidence 3478899999999999999999999999 98887774 45544222111111 00001110 0 11111111
Q ss_pred HHhcccCCCccEEEeCCCCC----HHHHHHH-HHhcCccEEEEEecCHHHHHHHHhC
Q 023080 126 LEAGQAGGESGFILDGFPRT----VKQAEIL-EEVMDIDLVVNLKLCEDVLLEKCLG 177 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~----~~~~~~l-~~~~~~d~vi~L~~~~e~l~~Rl~~ 177 (287)
+.. +..+|.+ +... ......+ ...+.++++|||++|.+++.+|+.+
T Consensus 121 l~~-----G~iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r 171 (630)
T 1x6v_B 121 ADA-----GLVCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 171 (630)
T ss_dssp HHT-----TCEEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HhC-----CCEEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhcc
Confidence 221 2334444 3222 1222222 2223468899999999999999864
No 91
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.13 E-value=2.9e-12 Score=107.51 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCch-HHHHHHHHhc--CCcccHHHHHHHHH--------
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSL-SQQLSEIVNQ--GKLVSDEIIFNLLS-------- 123 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~-~~~i~~~l~~--g~~~~~~~~~~~l~-------- 123 (287)
++|+|+|++||||||+++.|++.++...+++. ++++ ...++.. +..+...+.. +....+.....++.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-TLAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-EEES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-EEee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 47899999999999999999999864333221 0000 0000111 2223222211 10111111111110
Q ss_pred HHHHhcccCCCccEEEeCCCCCH--HH------------HHHHHHh-----c--CccEEEEEecCHHHHHHHHhCCC
Q 023080 124 KRLEAGQAGGESGFILDGFPRTV--KQ------------AEILEEV-----M--DIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 124 ~~l~~~~~~~~~g~Ildg~p~~~--~~------------~~~l~~~-----~--~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
..+...... +..+|+|+++.+. .+ ...+... . .||.+|+|++|++++++|+..|.
T Consensus 79 ~~i~~~l~~-g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 154 (214)
T 1gtv_A 79 HTIQGLCRG-YDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA 154 (214)
T ss_dssp HHHHHEEEE-EEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHhhC-CCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence 112221111 4578999987542 11 1122222 1 58999999999999999999875
No 92
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=9e-10 Score=92.36 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=87.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC----chHHHHHHHHhcCCcccHH------
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG----SLSQQLSEIVNQGKLVSDE------ 116 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~----~~~~~i~~~l~~g~~~~~~------ 116 (287)
+.++.+|+|+||+||||||+++.|++.++. .........+..... +. .....+...+..+.++...
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~ 84 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNY 84 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcccc
Confidence 346778999999999999999999998853 222221111110000 00 0112233333333322110
Q ss_pred --HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecC-HHHHHHHHhCCCccccCCCccccccc
Q 023080 117 --IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLC-EDVLLEKCLGRRMCSQCGGNFNVANI 193 (287)
Q Consensus 117 --~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~-~e~l~~Rl~~R~~~~~~g~~y~~~~~ 193 (287)
.....+...+.. +..+|+|..+.... .+........+||+..+ .+++.+|+.+|.
T Consensus 85 yg~~~~~i~~~l~~-----g~~vild~~~~g~~---~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~-------------- 142 (208)
T 3tau_A 85 YGTPLEYVEEKLAA-----GVDIFLEIEVQGAM---QVRKAMPEGIFIFLTPPDLSELKNRIIGRG-------------- 142 (208)
T ss_dssp EEEEHHHHHHHHHT-----TCCEEEECCHHHHH---HHHHHCTTSEEEEEECTTTTTSSCC-------------------
T ss_pred CCCcHHHHHHHHHc-----CCeEEEEeeHHHHH---HHHHhCCCeEEEEEeCCCHHHHHHHHHhcC--------------
Confidence 001223333333 36788886443332 23322222245555544 677777776653
Q ss_pred cccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHH
Q 023080 194 NVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEA 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~ 273 (287)
.++.+.+++|++.+.... .++...+ ++.+| + ++++++.+|..+
T Consensus 143 ------------------------------~~~~e~i~~Rl~~~~~e~----~~~~~~d-~vivN-~-~~~~~~~~l~~~ 185 (208)
T 3tau_A 143 ------------------------------TESMEVVEERMETAKKEI----EMMASYD-YAVVN-D-VVANAVQKIKGI 185 (208)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHH----HHGGGSS-EEEEC-S-SHHHHHHHHHHH
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHH----HhhccCC-EEEEC-c-CHHHHHHHHHHH
Confidence 455678888888876532 2333333 44454 3 699999999999
Q ss_pred hccch
Q 023080 274 LNLDE 278 (287)
Q Consensus 274 l~~~~ 278 (287)
|..+.
T Consensus 186 i~~~~ 190 (208)
T 3tau_A 186 VETEH 190 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97654
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.12 E-value=4.2e-10 Score=93.71 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=63.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHHHcCC-chHHHHHHHHhcCCcccHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREELASSG-SLSQQLSEIVNQGKLVSDEIIFNLLSKR 125 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~~~~~-~~~~~i~~~l~~g~~~~~~~~~~~l~~~ 125 (287)
.++.+|+|+|++||||||+++.|+..+ |.. +++.+++... +.... .........+. .+. .+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-~~~~~~~~~~~~~~~~~--------~~~-~~~~~ 92 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-LNRDLSFKAEDRAENIR--------RVG-EVAKL 92 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-TTTTCCSSHHHHHHHHH--------HHH-HHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-hhcccCcChHHHHHHHH--------HHH-HHHHH
Confidence 367789999999999999999999998 666 7887655321 11110 01111111000 001 11122
Q ss_pred HHhcccCCCccEEEeCCCCCHHHHHHHHHhcC--ccEEEEEecCHHHHHHHH
Q 023080 126 LEAGQAGGESGFILDGFPRTVKQAEILEEVMD--IDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 126 l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~--~d~vi~L~~~~e~l~~Rl 175 (287)
+... +..+|.++........+.+..... .-++|||+++.+++.+|+
T Consensus 93 ~~~~----~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 93 FADA----GIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHT----TCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHhC----CceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 2222 345666654344445555555433 235699999999999997
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.11 E-value=5.5e-11 Score=99.02 Aligned_cols=166 Identities=13% Similarity=0.178 Sum_probs=70.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeeehhHHHHHHHH---cCC----chHHHHHHHHhcCCcccHH--------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIATGDLVREELA---SSG----SLSQQLSEIVNQGKLVSDE-------- 116 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~~d~llr~~~~---~~~----~~~~~i~~~l~~g~~~~~~-------- 116 (287)
++.+|+|+|++||||||+++.|+..+ ....+..+...+.... .+. .....+......|..+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 84 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYG 84 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecC
Confidence 46789999999999999999999977 2222222111111000 000 0012233333333322110
Q ss_pred HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCcc-EEEEEe-cCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 117 IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDID-LVVNLK-LCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 117 ~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d-~vi~L~-~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
.....+...+.. +..+|+|+.+....+ +.... ++ ++|++. ++.+++.+|+..|.
T Consensus 85 ~~~~~i~~~l~~-----g~~vv~d~~~~~~~~---~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~--------------- 140 (207)
T 2j41_A 85 TPVQYVKDTMDE-----GHDVFLEIEVEGAKQ---VRKKF-PDALFIFLAPPSLEHLRERLVGRG--------------- 140 (207)
T ss_dssp EEHHHHHHHHHT-----TCEEEEECCGGGHHH---HHHHC-TTSEEEEEECCC---------------------------
T ss_pred CCHHHHHHHHHc-----CCeEEEEECHHHHHH---HHHhc-CCeEEEEEECCCHHHHHHHHHhcC---------------
Confidence 011223333333 357899986554332 22222 35 334443 56789999998763
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+++.+.+.+|+..+..... ++...+ ++ |+++ ++++++++|.+.|
T Consensus 141 -----------------------------~~~~~~~~~rl~~~~~~~~----~~~~~d-~v-I~n~-~~e~~~~~i~~~l 184 (207)
T 2j41_A 141 -----------------------------TESDEKIQSRINEARKEVE----MMNLYD-YV-VVND-EVELAKNRIQCIV 184 (207)
T ss_dssp --------------------------------------------CGGG----GGGGCS-EE-EECS-SHHHHHHHHHHHH
T ss_pred -----------------------------CCCHHHHHHHHHHHHHHHh----ccccCC-EE-EECC-CHHHHHHHHHHHH
Confidence 2334566667776654322 333333 44 4445 8999999999998
Q ss_pred ccch
Q 023080 275 NLDE 278 (287)
Q Consensus 275 ~~~~ 278 (287)
....
T Consensus 185 ~~~~ 188 (207)
T 2j41_A 185 EAEH 188 (207)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7543
No 95
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.11 E-value=1.6e-10 Score=95.46 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=100.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCc--------hHHHHHHHHhcCCcccHHH--------HH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGS--------LSQQLSEIVNQGKLVSDEI--------IF 119 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~--------~~~~i~~~l~~g~~~~~~~--------~~ 119 (287)
|+|+||+||||||+++.|.+.+.- ..+++....|.. ..+.. ....+...+.+|.++.... ..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~ 82 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV 82 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence 889999999999999999988742 334443343331 11111 2356777778887754321 12
Q ss_pred HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc--CccEEEEEecCHHHHHHHHhCCCccccCCCccccccccccC
Q 023080 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM--DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANINVKG 197 (287)
Q Consensus 120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~--~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~ 197 (287)
..+...+.. +..+|+|.-+... ..+.... .+..++.+..+.+++.+|+.+|+
T Consensus 83 ~~v~~~l~~-----g~~vil~id~~g~---~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg------------------ 136 (186)
T 1ex7_A 83 ASVKQVSKS-----GKTCILDIDMQGV---KSVKAIPELNARFLFIAPPSVEDLKKRLEGRG------------------ 136 (186)
T ss_dssp HHHHHHHHH-----TSEEEEECCHHHH---HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHC------------------
T ss_pred ceeeehhhC-----CCEEEecCCHHHH---HHHHHhcccCceEEEEeCCCHHHHHHHHHhcC------------------
Confidence 344455555 3678898654443 3344332 23344445556789999998874
Q ss_pred CCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccc
Q 023080 198 GNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLD 277 (287)
Q Consensus 198 ~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~ 277 (287)
.++.+.+++|+........ ..+......+.+| .+.++.+++|.++|..+
T Consensus 137 --------------------------~e~~e~i~~Rl~~a~~e~~---~~~~~~fD~vIvN--ddle~a~~~l~~iI~ae 185 (186)
T 1ex7_A 137 --------------------------TETEESINKRLSAAQAELA---YAETGAHDKVIVN--DDLDKAYKELKDFIFAE 185 (186)
T ss_dssp --------------------------CSCHHHHHHHHHHHHHHHH---HHTTTCSSEEEEC--SSHHHHHHHHHHHHTTC
T ss_pred --------------------------CCCHHHHHHHHHHHHHHHh---hccccCCcEEEEC--cCHHHHHHHHHHHHHhc
Confidence 5678899999988765432 1111112334444 37999999999988654
No 96
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.08 E-value=1.1e-10 Score=111.24 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCC-----eeehhHHHHHHHHcCCchHHHHHHHHhcCCc----ccHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVP-----HIATGDLVREELASSGSLSQQLSEIVNQGKL----VSDEIIFNL 121 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~-----~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~----~~~~~~~~~ 121 (287)
...+.+|+|+|+|||||||+|+.|++.+++. +++.|++.+. ........ +++..... ....+....
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~-~~~~~~~~----~~f~~~~~~~~~~re~~~~~~ 106 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE-AVKQYSSY----NFFRPDNEEAMKVRKQCALAA 106 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHSCCCCG----GGGCTTCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH-hccCCccc----cccCcccHHHHHHHHHHHHHH
Confidence 3467789999999999999999999998543 4677886555 33221110 11111000 001111112
Q ss_pred HH---HHHHhcccCCCccEEEeCCCCCHHHHHHHHHh----cCccEEEEEecC-HHHHHHHHhCCC
Q 023080 122 LS---KRLEAGQAGGESGFILDGFPRTVKQAEILEEV----MDIDLVVNLKLC-EDVLLEKCLGRR 179 (287)
Q Consensus 122 l~---~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~----~~~d~vi~L~~~-~e~l~~Rl~~R~ 179 (287)
+. ..+... . +..+|+|+...+..+...+... +..-++|++.++ ++.+.+|+..|.
T Consensus 107 l~~~~~~L~~~--~-g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 107 LRDVKSYLAKE--G-GQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHHHHS--C-CCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc--C-CceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 21 122111 1 4689999988887766555332 222345666676 677788886654
No 97
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.02 E-value=6.7e-10 Score=106.28 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRL 126 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l 126 (287)
..+++|+|+|++||||||+++.|+++++. .+++. |.++..+.....+...-.... + +.+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHH
Confidence 45788999999999999999999999863 67776 445554322211111000000 0 01111222222
Q ss_pred HhcccCCCccEEEeCCCCCHHHHHHHHHhc-Ccc-EEEEEecCHHHHHHHHh
Q 023080 127 EAGQAGGESGFILDGFPRTVKQAEILEEVM-DID-LVVNLKLCEDVLLEKCL 176 (287)
Q Consensus 127 ~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d-~vi~L~~~~e~l~~Rl~ 176 (287)
.. +.++|+|+..........+.... .++ ++|+|++|.+++.+|+.
T Consensus 442 ~~-----G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 KH-----NGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HT-----TCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred hC-----CCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 22 46899996443333333333332 357 78999999999999985
No 98
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.97 E-value=1.8e-09 Score=88.87 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC----CCeeehhHHHHHHHHcCC----chHHHHHHHHhcCCcccHH--------HH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG----VPHIATGDLVREELASSG----SLSQQLSEIVNQGKLVSDE--------II 118 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg----~~~i~~d~llr~~~~~~~----~~~~~i~~~l~~g~~~~~~--------~~ 118 (287)
.+++|+||+||||||++++|+..+. ..+..++..-+.....+. .....+..+...+.++... .-
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~~ 81 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccCc
Confidence 4588999999999999999998753 111111000000000000 0112223333333222100 00
Q ss_pred HHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHH-hcCccEEEEEecCH-HHHHHHHhCCCccccCCCcccccccccc
Q 023080 119 FNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEE-VMDIDLVVNLKLCE-DVLLEKCLGRRMCSQCGGNFNVANINVK 196 (287)
Q Consensus 119 ~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~-~~~~d~vi~L~~~~-e~l~~Rl~~R~~~~~~g~~y~~~~~~~~ 196 (287)
...+...+.. +..+|+|..+ .-+..+.. ......+||+..|. +++.+|+.+|.
T Consensus 82 ~~~i~~~l~~-----g~~~il~~~~---~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg----------------- 136 (186)
T 3a00_A 82 VASVKQVSKS-----GKTCILDIDM---QGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRG----------------- 136 (186)
T ss_dssp HHHHHHHHHT-----TCEEEEECCH---HHHHHHHTCGGGCCEEEEEECSCC----------------------------
T ss_pred HHHHHHHHHc-----CCeEEEEEcH---HHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcC-----------------
Confidence 1223333333 3567787432 33333444 23233567888865 88888888764
Q ss_pred CCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhcc
Q 023080 197 GGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNL 276 (287)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 276 (287)
.++++.+++|+......... .+.....++.++ + +.++...+|..+|..
T Consensus 137 ---------------------------~~~~~~i~~rl~~~~~~~~~---~~~~~~d~vi~n-d-~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 137 ---------------------------TETEESINKRLSAAQAELAY---AETGAHDKVIVN-D-DLDKAYKELKDFIFA 184 (186)
T ss_dssp ----------------------------------------------------CCCCSEEEEC-S-SHHHHHHHHHHHHTT
T ss_pred ---------------------------CCCHHHHHHHHHHHHHHHHh---hcccCCcEEEEC-c-CHHHHHHHHHHHHHh
Confidence 34566777787776544221 111222344444 3 799999999998865
Q ss_pred c
Q 023080 277 D 277 (287)
Q Consensus 277 ~ 277 (287)
+
T Consensus 185 ~ 185 (186)
T 3a00_A 185 E 185 (186)
T ss_dssp C
T ss_pred c
Confidence 4
No 99
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.92 E-value=2.7e-09 Score=102.60 Aligned_cols=112 Identities=14% Similarity=0.096 Sum_probs=60.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHhC----C--CeeehhHHHHHHHHcCCchHHHH-HHHHhcCCcccHHHHHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFLG----V--PHIATGDLVREELASSGSLSQQL-SEIVNQGKLVSDEIIFNLL 122 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~lg----~--~~i~~d~llr~~~~~~~~~~~~i-~~~l~~g~~~~~~~~~~~l 122 (287)
...++++|+|+|+|||||||+|+.|+++++ . .+++. |.++..+.........- ...+ ..+..++
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l~~~~~f~~~er~~~i--------~ri~~v~ 462 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHELSSELGFTREDRHTNI--------QRIAFVA 462 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHTCTTCCCSHHHHHHHH--------HHHHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHhccccCCChhHHHHHH--------HHHHHHH
Confidence 445778999999999999999999999986 3 45555 45555332111111000 0000 0011122
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHh-c--CccEEEEEecCHHHHHHHH
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-M--DIDLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~--~~d~vi~L~~~~e~l~~Rl 175 (287)
...+.. +..+|+|..-........+... . .+.++|||++|.+++.+|.
T Consensus 463 ~~~~~~-----g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 463 TELTRA-----GAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HHHHHT-----TCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred HHHHhC-----CCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh
Confidence 222222 2456665322112222222221 1 2458999999999999995
No 100
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.90 E-value=2.6e-09 Score=92.42 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHH-HHH--cCCchHHHHHH---H-H-----hcCCcccHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVRE-ELA--SSGSLSQQLSE---I-V-----NQGKLVSDEIIFNLL 122 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~-~~~--~~~~~~~~i~~---~-l-----~~g~~~~~~~~~~~l 122 (287)
..|+|+||+||||||+|+.|+++++..+++.|++... .+. ...+....... . + .++ .+....+....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 4689999999999999999999999999999886421 000 00010000000 0 0 000 12233344444
Q ss_pred HHHHHhcccCCCccEEEeCCCCCHHHHHH-HHHh---cCc-cEEEEEecCH-HHHHHHHhCCC
Q 023080 123 SKRLEAGQAGGESGFILDGFPRTVKQAEI-LEEV---MDI-DLVVNLKLCE-DVLLEKCLGRR 179 (287)
Q Consensus 123 ~~~l~~~~~~~~~g~Ildg~p~~~~~~~~-l~~~---~~~-d~vi~L~~~~-e~l~~Rl~~R~ 179 (287)
...+ ..... +..+|++|... ...+. +... ... -.+|||++|. +++.+|+.+|.
T Consensus 81 ~~~i-~~~~~-g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DWRKS-EEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHH-HTTTT-SSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHH-HHHhC-CCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 4444 32222 45678876332 22222 2220 112 2689999997 99999999874
No 101
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.89 E-value=1.6e-08 Score=82.88 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC--eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcc
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP--HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQ 130 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~--~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~ 130 (287)
++.+|+|+|++||||||+++.|+..++.. +++.+++... .......+ ++.+.. .+...+...+........
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~-~~~~~~~~-----~~~~~~-~~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY-IKHGRIDP-----WLPQSH-QQNRMIMQIAADVAGRYA 80 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT-CCSSCCCT-----TSSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh-hhcccccC-----Cccchh-hhhHHHHHHHHHHHHHHh
Confidence 56789999999999999999999876544 7777776432 11100000 000000 001111222211111000
Q ss_pred cCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 131 AGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 131 ~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
.. +..+++|++.... ....+.....+-.++++.++.++++.|+..|.
T Consensus 81 ~~-~~~~~~~~~~~~~-~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 81 KE-GYFVILDGVVRPD-WLPAFTALARPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HT-SCEEEECSCCCTT-TTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred cc-CCeEEEeccCcHH-HHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC
Confidence 11 2457888865432 22223222223357899999999999998873
No 102
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.87 E-value=2e-08 Score=82.45 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAGG 133 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~~ 133 (287)
.+|+|+||+||||||+++.|+..++. .+++.+++.+. . ......+.. ...+...+...+..........
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~-~-~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~- 72 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM-V-VGGYRPPWE-------SDELLALTWKNITDLTVNFLLA- 72 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT-C-CTTCCCGGG-------CHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh-h-ccccccCcc-------chhHHHHHHHHHHHHHHHHHhc-
Confidence 46899999999999999999998765 77887665432 1 000000000 0000111112221111111011
Q ss_pred CccEEEeCCCCCHHHHHHHHHh----c-C-ccEEEEEecCHHHHHHHHhCCC
Q 023080 134 ESGFILDGFPRTVKQAEILEEV----M-D-IDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 134 ~~g~Ildg~p~~~~~~~~l~~~----~-~-~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+..+|+|++. .....+.+... + . .-.+++|.++.+++.+|+..|.
T Consensus 73 ~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 73 QNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp TCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred CCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 3468999853 33322222222 2 1 2346889999999999998874
No 103
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.76 E-value=8.2e-08 Score=79.81 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=70.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHH-cCC-chHHHHHHHHhcCCcccHHHH--HHHH--
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELA-SSG-SLSQQLSEIVNQGKLVSDEII--FNLL-- 122 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~-~~~-~~~~~i~~~l~~g~~~~~~~~--~~~l-- 122 (287)
.++++|+|+|.|||||+|+++.|.+.+| +.+++++|.+++... ..+ .....+.+---. +.....+. ...+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~yk-E~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYK-EAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CC-SSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhH-HHHHHHHHHHHHHHHh
Confidence 3667899999999999999999999885 778999999996433 211 111110000000 00000000 0000
Q ss_pred ------HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCc-cEEEEEecCHHHHHHHH
Q 023080 123 ------SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDI-DLVVNLKLCEDVLLEKC 175 (287)
Q Consensus 123 ------~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~-d~vi~L~~~~e~l~~Rl 175 (287)
...... ... ...||+||. +.....+.+....+. -.+|.+.+++++..+|.
T Consensus 88 ~d~~~~~~~~~~-~~~-~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 88 ADPGFFCRKIVE-GIS-QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp HCTTTTHHHHSB-TCC-CSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred cCchHHHHHHHH-hcC-CCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 111111 111 346999987 666677777765333 34789999999999994
No 104
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.75 E-value=3.6e-08 Score=82.28 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeehhHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIATGDLV 89 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~d~ll 89 (287)
++.+|.|+|++||||||+++.|+..++ +.+++.|..+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 567899999999999999999999988 8888876654
No 105
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.72 E-value=4e-08 Score=83.35 Aligned_cols=26 Identities=35% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLS-KFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La-~~l 78 (287)
++.+|+|+||+||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45689999999999999999999 765
No 106
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.69 E-value=7e-09 Score=91.53 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGDLVR 90 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~llr 90 (287)
++++|+|+|++||||||+++.|++.+| +.++++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 567899999999999999999999887 78899988764
No 107
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.67 E-value=9.6e-08 Score=85.60 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
++++|+|.|+.||||||+++.|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5689999999999999999999999854
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.67 E-value=1.7e-07 Score=80.33 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
++.+|.|+||+||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 56789999999999999999999988865
No 109
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.62 E-value=6.4e-08 Score=90.97 Aligned_cols=119 Identities=14% Similarity=0.184 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----CeeehhHHHHHHHHcCCchHHHHHHHHhcCCc----ccHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-----PHIATGDLVREELASSGSLSQQLSEIVNQGKL----VSDEIIFNLL 122 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-----~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~----~~~~~~~~~l 122 (287)
..+..|+|+|.|||||||+++.|++.++. .+++.+++.+. ........ +++..+.. .........+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~-~~g~~~~~----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRD-MVKTYKSF----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHCSCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhh-hccCCCcc----cccCCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998753 45666554443 32221000 11111110 0001111222
Q ss_pred ---HHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-C-ccEEEEEe---cCHHHHHHHHhCC
Q 023080 123 ---SKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-D-IDLVVNLK---LCEDVLLEKCLGR 178 (287)
Q Consensus 123 ---~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~-~d~vi~L~---~~~e~l~~Rl~~R 178 (287)
...+... ++.++|+|+...+..+.+.+.... . -..+++|+ .+++.+.+|+..+
T Consensus 112 ~~~~~~l~~~---~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 112 NDVRKFLSEE---GGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHTT---CCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhC---CCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 2222211 145799999877776665553321 1 11356666 4578888888654
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.62 E-value=2.3e-08 Score=83.20 Aligned_cols=119 Identities=18% Similarity=0.130 Sum_probs=53.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHHHH---HcCCchHHHHHHHHhcCCcccHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVREEL---ASSGSLSQQLSEIVNQGKLVSDEIIFNLL 122 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~~~---~~~~~~~~~i~~~l~~g~~~~~~~~~~~l 122 (287)
..++.+|+|+|++||||||+++.|+..+ +.. +++.|.+.+... ..+...+. .++. + .+..+.+...+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~~-~-~~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYYY-L-QWDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHHH-T-SSCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCCc-c-ccCHHHHHHHH
Confidence 3467899999999999999999999876 443 344454432211 11111111 1110 1 11122222221
Q ss_pred HHHHHh--------------------cccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCCC
Q 023080 123 SKRLEA--------------------GQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 123 ~~~l~~--------------------~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
...+.. .....+..+|+||....... +. ..+|.+||+++|.++.++|+..|.
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~--~~~d~~i~v~~~~~~~~~R~~~R~ 165 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR--PFFDFVVYLDCPREIRFARENDQV 165 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG--GGCSEEEEECCC------------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH--hhcCEEEEEeCCHHHHHHHHhcCC
Confidence 111100 00111356889985432111 11 126899999999999999999884
No 111
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.60 E-value=3.2e-07 Score=80.77 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
..+++|+|.|..||||||+.++|.+.++-. ++.+. .+.+..+. .. .+...+..
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~~------~~--------yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETERG------QW--------YFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHHT------SC--------TTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHHh------ch--------HHHHHHHh
Confidence 468999999999999999999999998543 34331 12222211 11 11223333
Q ss_pred cccCCCccEEEeCCC------------CCHH-------HHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccccCC
Q 023080 129 GQAGGESGFILDGFP------------RTVK-------QAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCSQCG 185 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p------------~~~~-------~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g 185 (287)
.... +..+|+|.+- .+.. +...++ ..+.|++.|||+++.++..+|+..|..+|.
T Consensus 140 LP~~-G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R~~dp~-- 216 (304)
T 3czq_A 140 FPTA-GEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPL-- 216 (304)
T ss_dssp CCCT-TCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHHHHCTT--
T ss_pred cccC-CeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHhhcCcc--
Confidence 3333 5667787421 1221 122221 123588999999999999999987754331
Q ss_pred CccccccccccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHH--HHHHHHHhhchHHHHHHH-hcCcEEEEeCCCC
Q 023080 186 GNFNVANINVKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVK--ERLRVYNEKSQPVEEFYR-NRGKLLEFDLPGG 262 (287)
Q Consensus 186 ~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~--~rl~~y~~~~~~~~~~y~-~~~~~~~id~~~~ 262 (287)
..+.. +...++ +.+..|.+....+...-. ....+++||++..
T Consensus 217 k~Wk~-----------------------------------s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk 261 (304)
T 3czq_A 217 KIWKL-----------------------------------SPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK 261 (304)
T ss_dssp TGGGC-----------------------------------CHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred cccCC-----------------------------------CHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCc
Confidence 01111 112222 233445554444444322 2346999999863
Q ss_pred c---ccHHHHHHHHhccch
Q 023080 263 I---PESWPKLLEALNLDE 278 (287)
Q Consensus 263 ~---eev~~~I~~~l~~~~ 278 (287)
. -.+.+.|+..|....
T Consensus 262 ~~arl~v~~~Il~~l~~~~ 280 (304)
T 3czq_A 262 RRSRINVIRHMLTKLDYDG 280 (304)
T ss_dssp HHHHHHHHHHHHHHCCCTT
T ss_pred chHHHHHHHHHHHHHhhcc
Confidence 3 566677777776554
No 112
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.49 E-value=2.2e-07 Score=88.86 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CCeeehhHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG------VPHIATGDLV 89 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg------~~~i~~d~ll 89 (287)
.++.+|+|+|++||||||+++.|+..++ +.+++.|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 3678899999999999999999999984 3357776554
No 113
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.48 E-value=1.1e-07 Score=85.11 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
++..|+|+||+||||||++..||++++..+||+|..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 446899999999999999999999999999998776
No 114
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.47 E-value=2.3e-06 Score=76.53 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.+.++|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3568999999999999999999999875
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.46 E-value=5.1e-07 Score=75.30 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CCeeehhH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG-----VPHIATGD 87 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg-----~~~i~~d~ 87 (287)
.++.+|.|.||+||||||+++.|+..+. ...++.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4678999999999999999999999875 45566654
No 116
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.44 E-value=7.4e-06 Score=74.28 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+.++++|+|.|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44778999999999999999999999874
No 117
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.43 E-value=7.5e-07 Score=79.06 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDL 88 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~l 88 (287)
..++.+|.|+|++||||||+++.|+..++ +.++++|..
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 35778999999999999999999999876 456666654
No 118
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.42 E-value=1.4e-07 Score=84.14 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCeeehhHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHIATGDL 88 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i~~d~l 88 (287)
..+|.+|.|.||+||||||+++.|+..++ +.+++.|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 45788999999999999999999998875 345777664
No 119
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.42 E-value=1.9e-06 Score=77.33 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHHHhCCC
Q 023080 52 DRNVQWVFLGCPGVGKGTYA-SRLSKFLGVP 81 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla-~~La~~lg~~ 81 (287)
.++++|+|.|+.||||||++ +.|++.++..
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 36689999999999999999 9999988643
No 120
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.42 E-value=7.8e-07 Score=72.50 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++..++|+||+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998764
No 121
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.40 E-value=2.3e-06 Score=72.20 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+++.+++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4667899999999999999999998765
No 122
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.38 E-value=1.6e-06 Score=71.99 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++..|+|+||+||||||+++.|.+.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3666899999999999999999999875
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.27 E-value=1.1e-05 Score=66.69 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++..++|+||+||||||+.+.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345789999999999999999998763
No 124
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.22 E-value=3.2e-06 Score=79.56 Aligned_cols=106 Identities=15% Similarity=0.032 Sum_probs=59.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCC---eeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVP---HIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~---~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
..+++|+|.|..||||+|+.++|.+.++-. ++.+.. +...... .. .+.....+
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E~~------~~--------yl~R~~~~ 96 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEELE------RP--------PQWRFWRR 96 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHHHT------SC--------TTHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhcc------CC--------hhhhHHHh
Confidence 578999999999999999999999998543 333311 1111100 01 12223333
Q ss_pred cccCCCccEEEeCC------------CCCHH-------HHHHHHH----hcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 129 GQAGGESGFILDGF------------PRTVK-------QAEILEE----VMDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 129 ~~~~~~~g~Ildg~------------p~~~~-------~~~~l~~----~~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
.... +..+|+|.+ ..+.. +...++. .+.+++.|||+++.++..+|+..|..+|
T Consensus 97 lP~~-G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~p 172 (500)
T 3czp_A 97 LPPK-GRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDP 172 (500)
T ss_dssp CCCT-TCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-------
T ss_pred CCCC-CeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 4333 455666632 11211 2222222 2347899999999999999999986554
No 125
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.14 E-value=9.5e-07 Score=78.73 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
+..|+|+||+||||||++..|+++++..++++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45899999999999999999999999999998765
No 126
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.12 E-value=3.1e-06 Score=79.67 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=66.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG---VPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEA 128 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg---~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~ 128 (287)
..+++|+|.|..||||+|+.++|.+.++ +.++.+.. +..... +. ..+...+.+
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E~------~~--------~yl~R~~~~ 353 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEER------AQ--------PYLWRFWRH 353 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHHH------TS--------CTTHHHHTT
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhhh------cc--------hHHHHHHHh
Confidence 4889999999999999999999999884 44444311 111111 11 112234444
Q ss_pred cccCCCccEEEeCCC------------CCHH-------HHHHHH----HhcCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 129 GQAGGESGFILDGFP------------RTVK-------QAEILE----EVMDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p------------~~~~-------~~~~l~----~~~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
.... +..+|+|.+- .+.. +...++ ..+.+.+.|||+++.++..+|+..|..+|
T Consensus 354 lP~~-G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 354 IPAR-RQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTP 429 (500)
T ss_dssp CCCT-TCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSS
T ss_pred CCCC-CeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCC
Confidence 4444 5667888421 1222 112222 22348899999999999999999886554
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.03 E-value=0.0002 Score=57.57 Aligned_cols=107 Identities=20% Similarity=0.209 Sum_probs=59.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHH----HHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEI----IFNLLSKRLEA 128 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~----~~~~l~~~l~~ 128 (287)
++-+++|+|++||||||+++.+. .+...++. +.++..+.... +....... ........+..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~-d~~~g~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISS-DFCRGLMSDDE------------NDQTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEH-HHHHHHHCSST------------TCGGGHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEcc-HHHHHHhcCcc------------cchhhHHHHHHHHHHHHHHHHhC
Confidence 56689999999999999999865 35566666 44444333221 11111111 11111222222
Q ss_pred cccCCCccEEEeCCCCCHHH---HHHHHHhc-CccEEEEEecCHHHHHHHHhCCC
Q 023080 129 GQAGGESGFILDGFPRTVKQ---AEILEEVM-DIDLVVNLKLCEDVLLEKCLGRR 179 (287)
Q Consensus 129 ~~~~~~~g~Ildg~p~~~~~---~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~ 179 (287)
+...++|........ .-.+.... ..-.+++||-|...+-.|...|.
T Consensus 73 -----g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 -----GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -----TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -----CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 245777765444322 22222222 22347899999999988888773
No 128
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.92 E-value=5.4e-06 Score=74.30 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
.+|+|+||+||||||+|..|++.++..+|++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5799999999999999999999999999998876
No 129
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.90 E-value=7.1e-06 Score=72.50 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
.|..|+|+||+||||||++..|+++++..+|+.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45688999999999999999999999988888755
No 130
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.90 E-value=2.7e-05 Score=68.58 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHHc---CC----c-hHHHHHHHHhcCCcccHH-------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELAS---SG----S-LSQQLSEIVNQGKLVSDE------- 116 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~~---~~----~-~~~~i~~~l~~g~~~~~~------- 116 (287)
.+..|+|+|| ||+|+.+.|.+.+. ...+++..+.|..-.. +. . ....+...+.+|.++...
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 3445888998 79999999998764 2222222222221000 00 1 345666777777765321
Q ss_pred -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHh-cCccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEV-MDIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~-~~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
+-...+.+.+.. ++.+|+|.-+....+ +... ..| ++|||..|.-..++++.+|.
T Consensus 181 Gt~~~~V~~~~~~-----G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~L~~R~--------------- 236 (295)
T 1kjw_A 181 GTSVQSVREVAEQ-----GKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLEINKRI--------------- 236 (295)
T ss_dssp EEEHHHHHHHHHT-----TCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHHHCTTS---------------
T ss_pred eeeHHHHHHHHhc-----CCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHHHHhcC---------------
Confidence 112233444444 468999976554433 3222 224 78899877444445565552
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+++.+++|++...+. ...+......+ |.++ +.++.+++|..+|
T Consensus 237 -------------------------------t~~~i~~rl~~a~~~----e~~~~~~fd~v-ivNd-~le~a~~~l~~ii 279 (295)
T 1kjw_A 237 -------------------------------TEEQARKAFDRATKL----EQEFTECFSAI-VEGD-SFEEIYHKVKRVI 279 (295)
T ss_dssp -------------------------------CHHHHHHHHHHHHHH----HHHHGGGCSEE-ECCS-SHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHHHHHHHHHH----HHhccccCeEE-EECc-CHHHHHHHHHHHH
Confidence 235577788776431 11122222233 4444 8999999999998
Q ss_pred ccc
Q 023080 275 NLD 277 (287)
Q Consensus 275 ~~~ 277 (287)
...
T Consensus 280 ~~~ 282 (295)
T 1kjw_A 280 EDL 282 (295)
T ss_dssp HHH
T ss_pred Hhc
Confidence 754
No 131
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.88 E-value=1.1e-05 Score=69.11 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELA 94 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~ 94 (287)
++|.|+|++||||||+++.|++++|+++++.++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5799999999999999999999999999999988877554
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.85 E-value=1.3e-05 Score=70.54 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=29.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
...|..++|.||||+|||++|+.||+.+|.+++.+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34566788899999999999999999998876544
No 133
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.85 E-value=8.3e-06 Score=72.21 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDL 88 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~l 88 (287)
+..|+|+||+||||||++..|+++++..+|+.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45789999999999999999999999888887654
No 134
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.84 E-value=6e-05 Score=65.50 Aligned_cols=109 Identities=12% Similarity=0.058 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhccc
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQA 131 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~ 131 (287)
..+++|+|.|..||||+++.++|.+.++-.++.+-.+ ..+.. .+.....+...+.....
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~-------~~Pt~--------------eE~~~~ylwR~~~~lP~ 131 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF-------KAPTD--------------EEKSHDFLWRIEKQVPA 131 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC-------CSCCH--------------HHHTSCTTHHHHTTCCC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC-------CCCCh--------------hhhcCCHHHHHHHhCCC
Confidence 4789999999999999999999999985443332000 00111 11111112223344444
Q ss_pred CCCccEEEeCC------------CCCH-------HHHHHHHHh----cCccEEEEEecCHHHHHHHHhCCCccc
Q 023080 132 GGESGFILDGF------------PRTV-------KQAEILEEV----MDIDLVVNLKLCEDVLLEKCLGRRMCS 182 (287)
Q Consensus 132 ~~~~g~Ildg~------------p~~~-------~~~~~l~~~----~~~d~vi~L~~~~e~l~~Rl~~R~~~~ 182 (287)
. +...|+|+. ..+. .+...++.. +..-+-+||+++.++..+|+..|.-+|
T Consensus 132 ~-G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP 204 (289)
T 3rhf_A 132 A-GMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDP 204 (289)
T ss_dssp T-TCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCG
T ss_pred C-CeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCC
Confidence 4 566777741 0111 112222321 113355899999999999999986554
No 135
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.74 E-value=7.3e-06 Score=73.79 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
..+.|+|+|+|||||||+++.|++.+++.+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345789999999999999999999998877
No 136
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.71 E-value=1.9e-05 Score=72.26 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
+.+|+|+||+||||||++..|+++++..+|++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4578999999999999999999999988888765
No 137
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.67 E-value=1.7e-05 Score=74.98 Aligned_cols=36 Identities=8% Similarity=0.001 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------CeeehhH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGV-------PHIATGD 87 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~-------~~i~~d~ 87 (287)
..++.|+|+|.+||||||+++.|+++|+. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 36689999999999999999999999986 4677655
No 138
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=3.3e-05 Score=71.52 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+.|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3456799999999999999999999999887654
No 139
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=3.3e-05 Score=71.40 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3455699999999999999999999999987755
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=3.7e-05 Score=71.24 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|.-|+|.||||||||++|+.+|..+|++++.+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3556799999999999999999999999987654
No 141
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=3.5e-05 Score=70.55 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 445689999999999999999999999988754
No 142
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=5.2e-05 Score=64.90 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=27.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+.-++|.||||+||||+++.|+..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34588999999999999999999998776654
No 143
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.58 E-value=5.8e-05 Score=64.44 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..|+|.||||+||||+++.+++.++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 445688999999999999999999998877654
No 144
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.56 E-value=5.1e-05 Score=66.64 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CCee-ehhHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLG-------VPHI-ATGDLV 89 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg-------~~~i-~~d~ll 89 (287)
..++.+|.|.|++||||||+++.|+..++ ...+ +.|+++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 45788999999999999999999999875 3455 777654
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.53 E-value=9.1e-05 Score=59.78 Aligned_cols=39 Identities=33% Similarity=0.439 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CCeeehhHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL----G--VPHIATGDLVRE 91 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l----g--~~~i~~d~llr~ 91 (287)
++..++|.||+||||||+++.++..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 35678999999999999999998876 4 345666555543
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.52 E-value=6e-05 Score=66.34 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVRE 91 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~ 91 (287)
.+..|+|.||||+||||+++.|+..++..++.+ .++...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 455689999999999999999999998776654 355443
No 147
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=5.5e-05 Score=70.27 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 3556799999999999999999999999987654
No 148
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=6.2e-05 Score=69.30 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..|.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 3456799999999999999999999999987754
No 149
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.51 E-value=6.2e-05 Score=69.86 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATG 86 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d 86 (287)
.+..|+|+||||+||||+++.||+.++.+++.++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 4456999999999999999999999999887664
No 150
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=7.4e-05 Score=64.77 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..++|.||||+||||+++.++..++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 445689999999999999999999998877654
No 151
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.49 E-value=7.6e-05 Score=65.17 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..++|.||||+||||+++.++..++.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 355789999999999999999999998776543
No 152
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.49 E-value=7e-05 Score=67.62 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 345688999999999999999999999888765
No 153
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.48 E-value=0.0001 Score=63.68 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..+..++|.||||+|||++|+.+++.++.+++.+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3556789999999999999999999999887654
No 154
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.46 E-value=7e-05 Score=60.91 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
++++|+||+||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999988743
No 155
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.45 E-value=0.00019 Score=71.33 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+|.-|+|.||||+|||++++.+|..+|.+++.+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 4667799999999999999999999999887655
No 156
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.44 E-value=0.00072 Score=66.66 Aligned_cols=162 Identities=12% Similarity=0.036 Sum_probs=91.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CCeeehhHHHHHHHH---cCC----c-hHHHHHHHHhcCCcccHH-------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG-VPHIATGDLVREELA---SSG----S-LSQQLSEIVNQGKLVSDE------- 116 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg-~~~i~~d~llr~~~~---~~~----~-~~~~i~~~l~~g~~~~~~------- 116 (287)
.+..|+|+|| ||+|+.++|.+.+. ...+++....|..-. .+. . ....+...+.+|.++...
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 3456788999 49999999998874 233444344443110 010 0 345666777777765421
Q ss_pred -HHHHHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhc-CccEEEEEecCHHHHHHHHhCCCccccCCCcccccccc
Q 023080 117 -IIFNLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVM-DIDLVVNLKLCEDVLLEKCLGRRMCSQCGGNFNVANIN 194 (287)
Q Consensus 117 -~~~~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~-~~d~vi~L~~~~e~l~~Rl~~R~~~~~~g~~y~~~~~~ 194 (287)
+-...+.+.+.. ++.+|||.-+... ..+.... .| ++|||..|....++++.+|.
T Consensus 607 Gt~~~~v~~~~~~-----g~~~ildi~~~~~---~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~--------------- 662 (721)
T 2xkx_A 607 GTSVQSVREVAEQ-----GKHCILDVSANAV---RRLQAAHLHP-IAIFIRPRSLENVLEINKRI--------------- 662 (721)
T ss_pred eeeHHHHHHHHHC-----CCcEEEeCCHHHH---HHHHhcccCC-EEEEEeCCcHHHHHHHhccC---------------
Confidence 123334444544 4789999744332 2333211 24 78899877655555566553
Q ss_pred ccCCCCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHh
Q 023080 195 VKGGNGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEAL 274 (287)
Q Consensus 195 ~~~~~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l 274 (287)
+++.+++|++...+... .|.....++ |.++ +.++.+++|..+|
T Consensus 663 -------------------------------t~~~~~~rl~~a~~~e~----~~~~~fd~v-i~Nd-~l~~a~~~l~~~i 705 (721)
T 2xkx_A 663 -------------------------------TEEQARKAFDRATKLEQ----EFTECFSAI-VEGD-SFEEIYHKVKRVI 705 (721)
T ss_pred -------------------------------CHHHHHHHHHHHHHHHH----hccccCcEE-EECc-CHHHHHHHHHHHH
Confidence 12457777777643211 122212233 4444 8999999999999
Q ss_pred ccch
Q 023080 275 NLDE 278 (287)
Q Consensus 275 ~~~~ 278 (287)
....
T Consensus 706 ~~~~ 709 (721)
T 2xkx_A 706 EDLS 709 (721)
T ss_pred Hhcc
Confidence 7543
No 157
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.43 E-value=0.0001 Score=65.44 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..|+|.||||+|||++++.+++.++.+++.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 455799999999999999999999998877654
No 158
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.39 E-value=9.5e-05 Score=64.31 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=25.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++|.|||||||||+++.|+..++...+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 89999999999999999999988655543
No 159
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.00012 Score=63.95 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..++|.||||+|||++++.+++.++.+++.+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i 81 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 44688999999999999999999998776543
No 160
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.37 E-value=9.6e-05 Score=61.11 Aligned_cols=34 Identities=26% Similarity=0.197 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGD 87 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~ 87 (287)
.+..|+|+||+||||||+|..|+++.+ .+++.|.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 456799999999999999999999876 7777643
No 161
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.36 E-value=0.00013 Score=66.18 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..|+|.||||+||||+|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 44588999999999999999999998877654
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.33 E-value=0.00016 Score=64.38 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCeee
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHIA 84 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i~ 84 (287)
++.-|+|.||||+|||++++.++..+ +..++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 44578899999999999999999998 665543
No 163
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.32 E-value=0.00035 Score=69.42 Aligned_cols=118 Identities=17% Similarity=0.237 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh--hHHHHHHHHcCCchHHHHHHHHhcC---C----------------
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT--GDLVREELASSGSLSQQLSEIVNQG---K---------------- 111 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~--d~llr~~~~~~~~~~~~i~~~l~~g---~---------------- 111 (287)
++.-|+|.||||+|||.+|+.+|..++.+++++ .+++.. .-+...+.++++|..- .
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~---~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R 586 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM---WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT---TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc---ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhcc
Confidence 455689999999999999999999999988765 333322 1112233333333210 0
Q ss_pred --------cccHHHHHHHHHHHHHhcccCCCccEEEeC---CCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 112 --------LVSDEIIFNLLSKRLEAGQAGGESGFILDG---FPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 112 --------~~~~~~~~~~l~~~l~~~~~~~~~g~Ildg---~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
...+. +...+...+...... .++++=| .|...+.+ +-+.+.+|..|++..|.......+.+.
T Consensus 587 ~~~~~~~~~~~~r-v~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~A--llRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 587 GGNIGDGGGAADR-VINQILTEMDGMSTK--KNVFIIGATNRPDIIDPA--ILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp -----------CH-HHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHH--HHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred CCCCCCCchHHHH-HHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHh--HcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 00111 222233334333222 3444433 45555432 334456788999999987776666554
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.32 E-value=0.00018 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..++|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999986
No 165
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.29 E-value=0.00016 Score=65.17 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+.-|+|.||||+|||++|+.++..++.+++.+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 334588999999999999999999999877654
No 166
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.28 E-value=0.00015 Score=58.00 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999999987
No 167
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.28 E-value=0.00017 Score=63.20 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+..++|.||||+|||++++.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999987
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.28 E-value=0.00017 Score=61.55 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++|+|||||||||+++.|+..++...+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999887665544
No 169
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.27 E-value=7.5e-05 Score=64.20 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++|.||||+||||+++.|+..++.+++.+
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 78999999999999999999998776654
No 170
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.26 E-value=0.00021 Score=63.84 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
+..++|.||||+||||+++.|+..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34688999999999999999999997654
No 171
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.0017 Score=57.13 Aligned_cols=94 Identities=19% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHhCCCe-eehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhc
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFLGVPH-IATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAG 129 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~-i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~ 129 (287)
..+| |||+|| ||+|+.++|.+.+.-.+ +++. .... ..+|++++.+.+...+ ..
T Consensus 144 ~~RP--vVl~GP---~k~~l~~~L~~~~P~~F~~~v~------------~~r~----i~~~~fis~~~V~~vl----~~- 197 (308)
T 3kfv_A 144 FKRP--VVILGP---VADIAMQKLTAEMPDQFEIAET------------VSRT----DSPSKIIKLDTVRVIA----EK- 197 (308)
T ss_dssp SCCC--EEEEST---THHHHHHHHHHHCTTTEEECCC------------C------------CCCHHHHHHHH----HT-
T ss_pred CCCe--EEEeCc---cHHHHHHHHHHhCccccccccc------------cccc----ccCCCeecHHHHHHHH----HC-
Confidence 3455 788899 79999999988874332 2221 0011 3566777555444443 33
Q ss_pred ccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCH-HHHHHHHhCC
Q 023080 130 QAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCE-DVLLEKCLGR 178 (287)
Q Consensus 130 ~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~-e~l~~Rl~~R 178 (287)
++.+|||--+.... .+......-++|||..|. +++.+ +.+|
T Consensus 198 ----Gk~~ILDId~QGa~---~lk~~~~~pi~IFI~PPS~eeL~~-rr~R 239 (308)
T 3kfv_A 198 ----DKHALLDVTPSAIE---RLNYVQYYPIVVFFIPESRPALKA-LRQW 239 (308)
T ss_dssp ----TCEEEECCCHHHHH---HHHHTTCCCEEEEEEESCHHHHHH-HHHH
T ss_pred ----CCcEEEEECHHHHH---HHHhcCCCCEEEEEeCCCHHHHHH-HHhc
Confidence 57899985544433 333322222677777655 45554 4444
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.23 E-value=0.00023 Score=64.21 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..|+|.||||+||||+++.|++.++.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 455789999999999999999999998876543
No 173
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.21 E-value=0.00034 Score=57.35 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLVRE 91 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~llr~ 91 (287)
+..++|.|++|+||||+++.++..+ +.. +++..+++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 3578899999999999999999877 333 3566555443
No 174
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.21 E-value=0.00026 Score=62.84 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
+..++|.|+||+||||+++.+++.++.+++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34588999999999999999999998877654
No 175
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.20 E-value=0.00024 Score=66.23 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~ 85 (287)
++..++|.||||+|||++|+.+|+.++ ++++.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 445689999999999999999999998 666654
No 176
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.18 E-value=0.00027 Score=62.65 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..++.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4577899999999999999999999876
No 177
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.00022 Score=59.72 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+++|+||+||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45678999999999999999999876
No 178
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.14 E-value=0.00033 Score=63.74 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
+++..|+|.||+||||||+++.|+..++..++.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 355689999999999999999999988776655
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.14 E-value=0.00028 Score=61.14 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=25.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++|+|||||||||+++.|+..++...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 89999999999999999999887666544
No 180
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.12 E-value=0.0003 Score=58.22 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++-+++|+||+||||||+.+.|+..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3566899999999999999999998764
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.11 E-value=0.00038 Score=65.25 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.-|+|.||||+||||+++.++..++.+++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3488999999999999999999999887654
No 182
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.11 E-value=0.0012 Score=57.95 Aligned_cols=158 Identities=14% Similarity=0.035 Sum_probs=84.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-CeeehhHHHHHHHHc---CC-----chHHHHHHHHhcCCcccHHH--------HH
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGV-PHIATGDLVREELAS---SG-----SLSQQLSEIVNQGKLVSDEI--------IF 119 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~-~~i~~d~llr~~~~~---~~-----~~~~~i~~~l~~g~~~~~~~--------~~ 119 (287)
|||+|| ||+|+.++|.+.+.- ..+++....|..-.. +. .....+...+.+|.++.... ..
T Consensus 103 vVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~ 179 (292)
T 3tvt_A 103 VIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSV 179 (292)
T ss_dssp EEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred EEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEeh
Confidence 777888 599999999988753 223332222220000 00 02245666666666543211 12
Q ss_pred HHHHHHHHhcccCCCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCH-HHHHHHHhCCCccccCCCccccccccccCC
Q 023080 120 NLLSKRLEAGQAGGESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCE-DVLLEKCLGRRMCSQCGGNFNVANINVKGG 198 (287)
Q Consensus 120 ~~l~~~l~~~~~~~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~-e~l~~Rl~~R~~~~~~g~~y~~~~~~~~~~ 198 (287)
..+.+.+.. ++.+|||--+.... .+......-++|||..|. +++.+|+.+|
T Consensus 180 ~~V~~~~~~-----gk~viLdid~qg~~---~lk~~~~~pi~IFI~PpS~e~L~~r~~~r-------------------- 231 (292)
T 3tvt_A 180 ASVREVAEK-----GKHCILDVSGNAIK---RLQVAQLYPVAVFIKPKSVDSVMEMNRRM-------------------- 231 (292)
T ss_dssp HHHHHHHHH-----TCEEEECCCTHHHH---HHHHTTCCCEEEEECCSCHHHHHHTCTTS--------------------
T ss_pred HHHHHHHHc-----CCcEEEeccchhhh---hcccccccceEEEEECCCHHHHHHHHhCC--------------------
Confidence 344444554 46889986554433 333333333678887754 4554443332
Q ss_pred CCCCCccCCCCCCCcccccccccCCCCcHHHHHHHHHHHHhhchHHHHHHHhcCcEEEEeCCCCcccHHHHHHHHhccch
Q 023080 199 NGNPSISMAPLLPPAHCMSKLITRADDTEEVVKERLRVYNEKSQPVEEFYRNRGKLLEFDLPGGIPESWPKLLEALNLDE 278 (287)
Q Consensus 199 ~~~~~~~~~~~~~p~~~~~~L~~r~~d~~~~i~~rl~~y~~~~~~~~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~~~ 278 (287)
.++..+.+..|+..... .|.+....+.++ .+.++.+.+|..+|..+.
T Consensus 232 ------------------------~~e~~~~~~~r~~k~e~-------e~~~~fD~vIvN--ddle~a~~~l~~iI~~e~ 278 (292)
T 3tvt_A 232 ------------------------TEEQAKKTYERAIKMEQ-------EFGEYFTGVVQG--DTIEEIYSKVKSMIWSQS 278 (292)
T ss_dssp ------------------------CTTHHHHHHHHHHHHHH-------HHTTTCSEEECC--SSHHHHHHHHHHHHHHHT
T ss_pred ------------------------CchhHHHHHHHHHHHHH-------hhhhhCCEEEEC--cCHHHHHHHHHHHHHHhh
Confidence 24445555555443322 222222233333 479999999999998654
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.11 E-value=0.00036 Score=63.53 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..|+|.|+||+|||++++.++..++.+++.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 345789999999999999999999999887654
No 184
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.11 E-value=0.00028 Score=58.65 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
...++|.||||+||||+|..|++.++..+++
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3458999999999999999999988655443
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.10 E-value=0.00033 Score=58.51 Aligned_cols=27 Identities=7% Similarity=-0.073 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.+..++|.||||+||||+++.+++.++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999998764
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.06 E-value=0.00039 Score=56.04 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+|+|.|++||||||++..|+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999999875
No 187
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00039 Score=65.83 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..++|.||||+||||+++.|++.+|+.++.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 345789999999999999999999999887654
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.03 E-value=0.0004 Score=64.53 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCCee--ehhHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-GVPHI--ATGDLVR 90 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-g~~~i--~~d~llr 90 (287)
++.-|+|.||||+|||++++.|+..+ +.+++ +..+++.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 34568999999999999999999998 66554 4445443
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.01 E-value=0.00041 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.|+|.|+||+|||++|+.|+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 38899999999999999999865
No 190
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.98 E-value=0.00057 Score=60.32 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+|+|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.96 E-value=0.00059 Score=60.34 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehhHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATGDLV 89 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d~ll 89 (287)
.+..++|.||||+||||+++.++..+ +.. +++..++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 34458899999999999999999987 554 45555543
No 192
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.00063 Score=59.44 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
...++|.||||+||||+++.|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3478999999999999999999987
No 193
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.95 E-value=0.00042 Score=54.51 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+...++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999999876
No 194
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.91 E-value=0.00073 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.||.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 55689999999999999999999876
No 195
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.90 E-value=0.0007 Score=62.99 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..++|.||||+||||+++.|++.++..++.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4688999999999999999999998877654
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.89 E-value=0.00063 Score=56.36 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
+..++|.|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346889999999999999999998753
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.88 E-value=0.00068 Score=64.62 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..++|.||||+||||+++.|+..++.+++.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 566899999999999999999999997765443
No 198
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.86 E-value=0.00063 Score=59.84 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
..++|.|+||+||||+++.+++.++.+++.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~ 68 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRV 68 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHTCCEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 458899999999999999999999877653
No 199
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.85 E-value=0.00081 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
...++|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998764
No 200
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.84 E-value=0.00067 Score=55.52 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
++|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.83 E-value=0.00078 Score=63.38 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+.-++|.|+||+|||++++.|+..++.+++.+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 445689999999999999999999998877654
No 202
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.83 E-value=0.00084 Score=59.87 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 203
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.83 E-value=0.0005 Score=55.94 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=22.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
|+|+|++||||||+|..|+.. +.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 789999999999999999987 6543
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.82 E-value=0.00068 Score=57.13 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La 75 (287)
++-+++|+||+||||||+++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56689999999999999999988
No 205
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.82 E-value=0.00092 Score=59.92 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
+..++|.||||+|||++++.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 457899999999999999999999874
No 206
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.82 E-value=0.00053 Score=60.79 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
.++|.||||+|||++++.|++.++..++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 48899999999999999999999876543
No 207
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.80 E-value=0.00075 Score=56.10 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.-+++|+||+||||||+++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999998743
No 208
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.78 E-value=0.00096 Score=62.87 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
-++|.||||+||||+++.|+..++.+++.+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i 95 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITA 95 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 489999999999999999999988776544
No 209
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.78 E-value=0.00025 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.|+|.|+||+|||++|+.++...+ +++
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 388999999999999999988766 444
No 210
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.0006 Score=60.52 Aligned_cols=27 Identities=11% Similarity=0.035 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|..++|.||||+|||++++.+++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 366789999999999999999999988
No 211
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.77 E-value=0.001 Score=59.87 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..++|.||||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999999976
No 212
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.75 E-value=0.00081 Score=55.11 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 213
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.001 Score=58.67 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 466789999999999999999999876
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.74 E-value=0.00097 Score=58.84 Aligned_cols=27 Identities=33% Similarity=0.628 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++-+++|+||+||||||+++.|+.-+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 556899999999999999999998873
No 215
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0011 Score=57.08 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+.-+++|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 356689999999999999999998765
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.74 E-value=0.0011 Score=61.94 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----------CCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL----------GVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l----------g~~~i~~ 85 (287)
+..++|+|+||+|||++++.|+..+ +..++.+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3467899999999999999999997 6666655
No 217
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.00084 Score=60.17 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..++|.||||+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999999887
No 218
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.70 E-value=0.0012 Score=58.20 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-+++|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999999876
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.70 E-value=0.001 Score=59.49 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh------CCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL------GVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l------g~~~i~~ 85 (287)
.+..++|.|++|+||||+++.+++.+ +..++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 45578899999999999999999977 6655443
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.69 E-value=0.0012 Score=54.85 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|++||||||+++.|+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998653
No 221
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.68 E-value=0.00087 Score=66.90 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.++..|+|+|||||||||+++.|+..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3556799999999999999999999998876654
No 222
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.67 E-value=0.00091 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55689999999999999999997544
No 223
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.66 E-value=0.0011 Score=58.54 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
.+..+++.||||+||||+++.|++.++..++.+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344577788899999999999999998777654
No 224
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.66 E-value=0.0013 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.016 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.+++++|+|||||||++-.++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999997777665
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0011 Score=54.59 Aligned_cols=33 Identities=27% Similarity=0.200 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~ 85 (287)
++-+++|.|++||||||++..|+...+ +.+++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEEC
Confidence 556899999999999999999987433 334444
No 226
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.58 E-value=0.0017 Score=57.37 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC----CC--eeehhHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLG----VP--HIATGDLVRE 91 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg----~~--~i~~d~llr~ 91 (287)
+..++|.||||+|||+++..|+..+. .. +++..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 45788999999999999999997553 43 3566666554
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.58 E-value=0.0016 Score=60.27 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|+|++||||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999776
No 228
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.57 E-value=0.0014 Score=54.10 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
-+|+++|+|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999886433
No 229
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.55 E-value=0.0011 Score=55.67 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999997543
No 230
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.55 E-value=0.0017 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++|.||+|+||||+++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78899999999999999999988
No 231
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.54 E-value=0.0017 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998765
No 232
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.00072 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+.|+|++||||||+++.|...|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999876
No 233
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.53 E-value=0.0079 Score=56.03 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
.+..|||+||+|+| +.++|.+.+.-.+.+.. .| ...+...|. ...+.+. ..+.+.+..
T Consensus 223 ~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~--TR--pR~gE~dG~-------~Y~FTs~----~~V~~vl~~---- 280 (468)
T 3shw_A 223 FLRPVTIFGPIADV---AREKLAREEPDIYQIAK--SE--PRDAGTDQR-------SSGIIRL----HTIKQIIDQ---- 280 (468)
T ss_dssp SCCCEEEESTTHHH---HHHHHHHHCTTTEEECC--CB--C-----------------CBCCH----HHHHHHHTT----
T ss_pred CCCEEEEECCCHHH---HHHHHHHhCCCceeeec--CC--CCCcccccc-------cCCcccH----HHHHHHHHC----
Confidence 45568899999999 88888887754343331 12 111111111 1122222 333333443
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
++.+|||--+... +.+......-++|||..|.-..++++.+|
T Consensus 281 -Gk~~iLdId~qg~---~~l~~~~~~p~~IFI~PPS~e~L~~~~~r 322 (468)
T 3shw_A 281 -DKHALLDVTPNAV---DRLNYAQWYPIVVFLNPDSKQGVKTMRMR 322 (468)
T ss_dssp -TCEEEECCCHHHH---HHHHHTTCCCEEEEEECSCHHHHHHHHHH
T ss_pred -CCeEEEEeCHHHH---HHHHhcCCCCEEEEEeCcCHHHHHHHHhc
Confidence 5789999644433 34443322236788887655555444333
No 234
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.53 E-value=0.0013 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
-+++|+||.||||||+.+.|+--+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998654
No 235
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=55.80 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999997643
No 236
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.52 E-value=0.0018 Score=51.19 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.+...|+|+|.+|+||||+.++|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 346678999999999999999999764
No 237
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.52 E-value=0.0018 Score=58.42 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-+|+|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 367789999999999999999999876
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.49 E-value=0.0022 Score=59.37 Aligned_cols=27 Identities=22% Similarity=0.570 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|.|++||||||++..|+..+
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 239
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=53.02 Aligned_cols=25 Identities=32% Similarity=0.605 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+.+.|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999999853
No 240
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.48 E-value=0.0016 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
....|+|+|++||||||+.++|+..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 241
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.48 E-value=0.0016 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
..|+|.|+||+|||++++.|++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3488999999999999999998764
No 242
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.47 E-value=0.002 Score=63.84 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----------CCCeeehh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL----------GVPHIATG 86 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l----------g~~~i~~d 86 (287)
.+..++|.|+||+||||+++.|++.+ +..++.++
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 34468999999999999999999997 77777663
No 243
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.47 E-value=0.0014 Score=56.42 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0017 Score=54.48 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|.|++||||||++..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5568999999999999999999984
No 245
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0016 Score=57.82 Aligned_cols=23 Identities=39% Similarity=0.509 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++|.||||+||||+++.|++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998864
No 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.46 E-value=0.0016 Score=55.48 Aligned_cols=26 Identities=38% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0021 Score=51.41 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++..|+|+|++|+||||+.++|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999975
No 248
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.45 E-value=0.0016 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.++..|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999864
No 249
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0016 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++|.||||+||||+++.|++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999999999863
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.45 E-value=0.0014 Score=56.95 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998654
No 251
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.45 E-value=0.0013 Score=54.79 Aligned_cols=25 Identities=28% Similarity=0.126 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|+||.||||||+.+.|+-.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999853
No 252
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.43 E-value=0.002 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 5678999999999999999999753
No 253
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.43 E-value=0.0015 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998644
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.42 E-value=0.0016 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 55688999999999999999998654
No 255
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.42 E-value=0.0025 Score=63.05 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIA 84 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~ 84 (287)
..++|.||||+|||++|+.|++.++.+++.
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~ 518 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLR 518 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999999866553
No 256
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0022 Score=60.13 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 467899999999999999999999876
No 257
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.41 E-value=0.0015 Score=58.90 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVP 81 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~ 81 (287)
...++|+|++||||||+++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999987654
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.40 E-value=0.0016 Score=55.56 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+--+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45589999999999999999997654
No 259
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.40 E-value=0.0022 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|.|+|||||||+++.|+..+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55689999999999999999998764
No 260
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.39 E-value=0.002 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...|+|+|++||||||+.++|+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 261
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.39 E-value=0.0025 Score=51.30 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+...|+|+|.+|+||||+..+|..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 34668999999999999999988875
No 262
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.39 E-value=0.0017 Score=56.21 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 55688999999999999999998654
No 263
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.39 E-value=0.0021 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|+||.||||||+.+.|+--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5568999999999999999999864
No 264
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.39 E-value=0.0026 Score=52.57 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+...|+|+|.+||||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999875
No 265
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.38 E-value=0.0017 Score=55.81 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55689999999999999999997654
No 266
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.38 E-value=0.002 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-+++|+|+.||||||+.+.|+--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557999999999999999999863
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.38 E-value=0.0018 Score=55.77 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 55689999999999999999998654
No 268
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.37 E-value=0.0018 Score=55.66 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 55689999999999999999998654
No 269
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.37 E-value=0.0017 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999998654
No 270
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.37 E-value=0.0023 Score=59.38 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CCC--eeehhHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL-----GVP--HIATGDL 88 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l-----g~~--~i~~d~l 88 (287)
+..++|.||||+||||+++.++..+ +.. +++..++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4568899999999999999999876 444 4455444
No 271
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.37 E-value=0.0026 Score=51.25 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35578999999999999999999753
No 272
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.37 E-value=0.0018 Score=51.69 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=21.4
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++..+...|+|+|.+|+||||+.++|..
T Consensus 16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 16 PRGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 3344678999999999999999999975
No 273
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.37 E-value=0.0022 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4567999999999999999999875
No 274
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.37 E-value=0.0023 Score=49.74 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++..|+|+|++|+||||+...|...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3578999999999999999988753
No 275
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.37 E-value=0.0022 Score=51.74 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
..-|+|.|++|+||||+|..|.++ |...++-
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lvaD 46 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVCD 46 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEES
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEecC
Confidence 446899999999999999999884 7766654
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.35 E-value=0.0016 Score=54.50 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999997544
No 277
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.35 E-value=0.0011 Score=58.79 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Q 023080 57 WVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++|.|+||+|||++++.|++.++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 88999999999999999999876
No 278
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.35 E-value=0.0022 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
...|+|+|++|+||||+.++|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999974
No 279
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.0024 Score=55.85 Aligned_cols=24 Identities=46% Similarity=0.564 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++|.||||+||||+++.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999863
No 280
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.35 E-value=0.0024 Score=57.08 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
+..++|.|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346889999999999999999998865
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.35 E-value=0.0018 Score=54.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+-.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999998654
No 282
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.35 E-value=0.003 Score=49.90 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..++..|+|+|.+|+||||+.++|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34677899999999999999999964
No 283
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.34 E-value=0.0032 Score=49.31 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+..+|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4668899999999999999999965
No 284
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0023 Score=56.96 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
++|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 285
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.33 E-value=0.0029 Score=54.58 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
...|+|.||||+|||+++..|+..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 346999999999999999999997644
No 286
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.33 E-value=0.0024 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 35678999999999999999998754
No 287
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.0022 Score=57.84 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999998643
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.32 E-value=0.0029 Score=56.53 Aligned_cols=27 Identities=37% Similarity=0.587 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.++.|+|+|||||||+.+.|+..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 467789999999999999999998654
No 289
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.32 E-value=0.0021 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 557899999999999999999975
No 290
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.31 E-value=0.0011 Score=66.15 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
++..++|.||||+||||+++.|+..++..++.+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v 542 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 455688999999999999999999997766543
No 291
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.31 E-value=0.0024 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+..|+++|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999764
No 292
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.31 E-value=0.0023 Score=51.52 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 3567899999999999999999975
No 293
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.30 E-value=0.0031 Score=52.99 Aligned_cols=27 Identities=19% Similarity=-0.109 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..+++++|+||+||||.+-.++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356789999999999999999888877
No 294
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.0028 Score=51.52 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=21.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+...|+|+|.+|+||||+.++|...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3446789999999999999999999753
No 295
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0029 Score=50.86 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+.+.|+|+|++|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 46678999999999999999999764
No 296
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.29 E-value=0.0021 Score=55.42 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+--+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55689999999999999999998654
No 297
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0028 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++-.++|.|+|||||||++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999888764
No 298
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.27 E-value=0.0021 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+-.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45578999999999999999997644
No 299
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.26 E-value=0.0021 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.606 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+-.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55688999999999999999998654
No 300
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.26 E-value=0.003 Score=57.25 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-.++|+||+||||||+.+.|+..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 55689999999999999999998865
No 301
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.26 E-value=0.0017 Score=52.76 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=21.1
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.++.+...|+|+|.+|+||||+.+.|...
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhc
Confidence 44456789999999999999999877553
No 302
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.26 E-value=0.0029 Score=56.83 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..+|+|+|+||+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999876
No 303
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.25 E-value=0.0033 Score=52.07 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+...|+|+|.+||||||+..+|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999875
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.24 E-value=0.003 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999753
No 305
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.24 E-value=0.0029 Score=50.04 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|++|+||||+.+.|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998753
No 306
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.23 E-value=0.0027 Score=57.66 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45689999999999999999998654
No 307
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.23 E-value=0.0035 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999999853
No 308
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.23 E-value=0.0033 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
....+|+|+|+|||||||+.+.|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998754
No 309
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.22 E-value=0.0029 Score=50.34 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++..|+|+|.+|+||||+.++|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999753
No 310
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.22 E-value=0.0028 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 45689999999999999999998644
No 311
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.22 E-value=0.014 Score=53.23 Aligned_cols=100 Identities=13% Similarity=0.041 Sum_probs=51.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeehhHHHHHHHHcCCchHHHHHHHHhcCCcccHHHHHHHHHHHHHhcccC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIATGDLVREELASSGSLSQQLSEIVNQGKLVSDEIIFNLLSKRLEAGQAG 132 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d~llr~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~l~~~l~~~~~~ 132 (287)
.+..|||+||+| +|+.++|.+.+.-.+.++ .+. ...+...|. ...+++. ..+.+.+..
T Consensus 231 ~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~---tr~-pR~gE~dG~-------~Y~Fv~~----~~V~~~~~~---- 288 (391)
T 3tsz_A 231 FLRPVTIFGPIA---DVAREKLAREEPDIYQIA---KSE-PRDAGTDQR-------SSGIIRL----HTIKQIIDQ---- 288 (391)
T ss_dssp SCCCEEEESTTH---HHHHHHHHHHCTTTEEEC---CCC-CCCSSSCCC---------CCCCH----HHHHHHHTT----
T ss_pred CCCEEEEECCCH---HHHHHHHHhhCccccccc---cCC-CCCcccCCc-------cCCcCcH----HHHHHHHHc----
Confidence 445588999998 899999998875444443 121 111111110 0123332 233333333
Q ss_pred CCccEEEeCCCCCHHHHHHHHHhcCccEEEEEecCHHHHHHHHhCC
Q 023080 133 GESGFILDGFPRTVKQAEILEEVMDIDLVVNLKLCEDVLLEKCLGR 178 (287)
Q Consensus 133 ~~~g~Ildg~p~~~~~~~~l~~~~~~d~vi~L~~~~e~l~~Rl~~R 178 (287)
++.+|||--+... +.+......-++|||..|.-..++++.+|
T Consensus 289 -Gk~~iLdId~qg~---~~l~~~~~~p~~IFI~PPS~~~L~~~~~r 330 (391)
T 3tsz_A 289 -DKHALLDVTPNAV---DRLNYAQWYPIVVFLNPDSKQGVKTMRMR 330 (391)
T ss_dssp -TCEEEECCCHHHH---HHHHHTTCCCEEEEEECCCHHHHHHHHHH
T ss_pred -CCEEEEEeCHHHH---HHHHhCCCCCEEEEEeCcCHHHHHHHHhc
Confidence 5789999654433 34443322236778877654444444443
No 312
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.22 E-value=0.0032 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+.+.|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3567899999999999999999964
No 313
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.21 E-value=0.0031 Score=50.41 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999975
No 314
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.21 E-value=0.0033 Score=50.49 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
....|+|+|.+|+||||+.++|...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998753
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.20 E-value=0.0036 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3567899999999999999999875
No 316
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.20 E-value=0.0023 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+--+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998654
No 317
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.20 E-value=0.0032 Score=49.02 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.++|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 318
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.0023 Score=51.50 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=21.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+...|+|+|.+|+||||+.++|...
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3346789999999999999999988654
No 319
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.20 E-value=0.0033 Score=48.65 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.|+|+|.+|+||||+.++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 320
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.19 E-value=0.0029 Score=57.11 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45688999999999999999998654
No 321
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.19 E-value=0.0031 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..++|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999765
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.19 E-value=0.0036 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++|+||||++..||..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999876
No 323
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.19 E-value=0.0028 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=21.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+++.....|+|+|.+|+||||+..+|..
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3444667899999999999999998854
No 324
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.19 E-value=0.0032 Score=49.52 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.++|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 457899999999999999998864
No 325
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.18 E-value=0.0036 Score=51.52 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+...|+|+|++|+||||+..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998753
No 326
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.18 E-value=0.0041 Score=50.00 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
....|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999999865
No 327
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.16 E-value=0.0031 Score=54.94 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
++|.||||+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.16 E-value=0.003 Score=56.87 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45588999999999999999998643
No 329
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.16 E-value=0.0039 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.-.|+|+||+||||||+.+.|+..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33489999999999999999998765
No 330
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.15 E-value=0.0031 Score=57.12 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 55688999999999999999998644
No 331
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.14 E-value=0.0033 Score=49.51 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 5578999999999999999999764
No 332
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0036 Score=49.49 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
..+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhC
Confidence 346678999999999999999999753
No 333
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.13 E-value=0.0046 Score=49.48 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+.|+|+|.+|+||||+.++|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence 35568999999999999999998654
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.12 E-value=0.003 Score=49.26 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...|+|+|++|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998753
No 335
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.11 E-value=0.0032 Score=54.43 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+.-+++|.|++||||||++..|+...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56689999999999999999998643
No 336
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.11 E-value=0.0027 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..|+|+|++|+||||+.++|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.10 E-value=0.0032 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.+.|+|+|.+|+||||+.+.|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 4678999999999999999999753
No 338
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.10 E-value=0.0037 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 35678999999999999999999763
No 339
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.10 E-value=0.0039 Score=49.92 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+.++|..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4668899999999999999999864
No 340
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.09 E-value=0.0038 Score=54.98 Aligned_cols=32 Identities=19% Similarity=0.055 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCCeeehh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGVPHIATG 86 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~d 86 (287)
..++|.|++|+||||+++.+++..+..+++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 47889999999999999999998886666654
No 341
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.0028 Score=50.42 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
.++..|+|+|++|+||||+..+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999998885
No 342
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.09 E-value=0.0037 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
...|+|+|++|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999999975
No 343
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.07 E-value=0.0024 Score=57.60 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+...++|+|++||||||+.+.|+..+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445799999999999999999998764
No 344
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....+.|+|+|.+|+||||+.+.|..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcC
Confidence 34668999999999999999999874
No 345
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0038 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023080 57 WVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~l 78 (287)
++|.||+|+||||+++.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 8899999999999999999986
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.06 E-value=0.0028 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+-+++|+||.||||||+.+.|+-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999998643
No 347
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.06 E-value=0.0035 Score=56.80 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45578999999999999999998643
No 348
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.06 E-value=0.0058 Score=50.04 Aligned_cols=26 Identities=19% Similarity=-0.019 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+..+++++|++||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999998887
No 349
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.06 E-value=0.0024 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.++..|+|+|++||||||+.+.|+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4667899999999999999998853
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.06 E-value=0.0038 Score=56.41 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+||+||||||+.+.|+--+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 55689999999999999999998644
No 351
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0038 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.+.|..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 352
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.06 E-value=0.0035 Score=53.28 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.++++|+|+|.+|+||||+...|..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhC
Confidence 4678999999999999999999864
No 353
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.0049 Score=49.66 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4568899999999999999999976
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.05 E-value=0.0036 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999754
No 355
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.04 E-value=0.0053 Score=52.11 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+..++++.|.+|+||||++..|+..+
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999999765
No 356
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.04 E-value=0.0032 Score=49.60 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999974
No 357
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.03 E-value=0.0046 Score=50.10 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 35678999999999999999998753
No 358
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.03 E-value=0.004 Score=49.82 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 359
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.03 E-value=0.0035 Score=48.95 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4578999999999999999999754
No 360
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.03 E-value=0.0028 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+.++|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999975
No 361
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.03 E-value=0.0042 Score=49.27 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 5678999999999999999999853
No 362
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.01 E-value=0.005 Score=60.96 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=23.1
Q ss_pred CCe-EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNV-QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~-~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+|. .++|.||||+|||++|+.|++.+
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 443 68999999999999999999986
No 363
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.01 E-value=0.0031 Score=50.08 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 557899999999999999999974
No 364
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.01 E-value=0.0034 Score=54.95 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45688999999999999999997654
No 365
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.01 E-value=0.0026 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 45589999999999999999998643
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.00 E-value=0.0039 Score=56.86 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.-+++|+||+||||||+.+.|+--
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 5568999999999999999999853
No 367
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.00 E-value=0.0041 Score=48.46 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La 75 (287)
...|+|+|.+|+||||+.++|.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEEECCCCCCHHHHHHHHc
Confidence 3579999999999999999885
No 368
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.99 E-value=0.004 Score=49.28 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.+.|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3557899999999999999999875
No 369
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.98 E-value=0.0043 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 36688999999999999999999863
No 370
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.98 E-value=0.0041 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+.+...|+|+|.+|+||||+...|..
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHc
Confidence 34678999999999999999999863
No 371
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.98 E-value=0.0038 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3557899999999999999998853
No 372
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.97 E-value=0.0037 Score=56.12 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|.|++||||||++..|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 66789999999999999999999876
No 373
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.96 E-value=0.0047 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+.|+|+|.+|+||||+.++|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999753
No 374
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.96 E-value=0.0047 Score=48.27 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..|+|+|.+|+||||+.++|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999863
No 375
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.96 E-value=0.0062 Score=54.12 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCe
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPH 82 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~ 82 (287)
.+..++|.||+|+||||+++.+++.+.+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 345689999999999999999999987543
No 376
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.95 E-value=0.0044 Score=54.95 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC--CCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG--VPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg--~~~i~~ 85 (287)
++..++|.|+||+||||+|..++...| +.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 345678999999999999999997543 456666
No 377
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.005 Score=58.58 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=29.0
Q ss_pred cccccCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 44 NFARKAPKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 44 ~~~~~~~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
...+.+.+.++-++.|+||.||||||+.+.|+-.+
T Consensus 15 ~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 15 KLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33455777788899999999999999999998654
No 378
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.95 E-value=0.0033 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 379
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.0035 Score=58.43 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+++|+||.||||||+++.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56689999999999999999998754
No 380
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.93 E-value=0.0055 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 46688999999999999999999764
No 381
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.92 E-value=0.0025 Score=56.23 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+.-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45688999999999999999998765
No 382
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.91 E-value=0.0036 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
.....|+|+|.+|+||||+.++|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 355789999999999999999885
No 383
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.90 E-value=0.0053 Score=57.83 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++||||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999999766
No 384
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.90 E-value=0.0052 Score=49.98 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++.....|+|+|.+|+||||+...|...
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhC
Confidence 3446678999999999999999999763
No 385
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0042 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 35678999999999999999999753
No 386
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.90 E-value=0.0062 Score=56.07 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+.-.|+|+||+||||||+.+.|...++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456799999999999999999998774
No 387
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.88 E-value=0.0066 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
..+...|+|+|.+|+||||+..+|.
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred cCCccEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999999999999885
No 388
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.87 E-value=0.005 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999999986
No 389
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.87 E-value=0.0055 Score=48.78 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 35578999999999999999999753
No 390
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.86 E-value=0.0055 Score=49.60 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+...|+|+|.+|+||||+...|..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 44678899999999999999998864
No 391
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.86 E-value=0.0061 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.++|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999998753
No 392
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.86 E-value=0.0054 Score=52.21 Aligned_cols=27 Identities=15% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
..+...|+|+|.+|+||||+..+|...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence 346689999999999999999999743
No 393
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.85 E-value=0.0042 Score=49.80 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+...|+|+|.+|+||||+.+.|...+
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 355789999999999999998887654
No 394
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.85 E-value=0.0043 Score=54.85 Aligned_cols=24 Identities=21% Similarity=0.183 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
-.+++|+|+.||||||+.+.|...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 457889999999999999999864
No 395
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.85 E-value=0.0041 Score=62.43 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
+..++|+|+||+||||+++.|+..+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999987
No 396
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.84 E-value=0.0057 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4678899999999999999999874
No 397
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.84 E-value=0.0068 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.+...|+|+|.+||||||+++.+.-.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i~~~ 58 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRIIHG 58 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHS
T ss_pred cCccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4678999999999999999999965443
No 398
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.0061 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|.|||||||||++..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998764
No 399
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.83 E-value=0.0029 Score=59.62 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.|+|.||||+|||++|+.|+..++
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 588999999999999999999774
No 400
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0065 Score=48.63 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3568899999999999999999974
No 401
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.82 E-value=0.0027 Score=57.12 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||+||||||+.+.|+--+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 402
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.81 E-value=0.0074 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999999864
No 403
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.81 E-value=0.0058 Score=49.58 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 35678999999999999999999764
No 404
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.79 E-value=0.0057 Score=48.54 Aligned_cols=24 Identities=21% Similarity=0.312 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+..+|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 405
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.78 E-value=0.007 Score=54.06 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++.+|+|+|++|+||||+.+.|+..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467789999999999999999998765
No 406
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.76 E-value=0.0069 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 023080 56 QWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.|+|+|.+|+||||+.++|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 407
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.75 E-value=0.0051 Score=54.10 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+++.++-+|+|+|.||+||||+.+.|..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4455667899999999999999999974
No 408
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.75 E-value=0.006 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...|+|+|++||||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 409
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=95.75 E-value=0.064 Score=47.59 Aligned_cols=118 Identities=19% Similarity=0.117 Sum_probs=56.6
Q ss_pred CCCCeEEEEEcCCCCCHHH-------HHHHHHHHhCCCeeeh---hHHH---HHHHHcCCchHHHHHHHHhcCCcccHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGT-------YASRLSKFLGVPHIAT---GDLV---REELASSGSLSQQLSEIVNQGKLVSDEI 117 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTT-------la~~La~~lg~~~i~~---d~ll---r~~~~~~~~~~~~i~~~l~~g~~~~~~~ 117 (287)
..|| |+|+||.+.|--+ +-..|-++|+-.+.-+ .|+. +..+. ....+..+......+... +
T Consensus 141 ~~RP--vvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~tR~~~d~~~~~r~~~~-~~~~~~~~e~~~~~~~~~--e- 214 (337)
T 4dey_A 141 SMRP--VVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLN-NPSKHAIIERSNTRSSLA--E- 214 (337)
T ss_dssp SSCC--EEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGC--------------------CCCHH--H-
T ss_pred CCCc--eEEECCccccchhHHHHHHHHHHhhHHhcCCccceEeecchhhhcchhhhh-cccchhhhcccccccchH--H-
Confidence 3455 8899999999853 7777888887653211 0110 00000 001111222223333222 1
Q ss_pred HHHHHHHHHHhcccCCCccEEEeCCCC-CHHHHHHHHHhcCccEEEEEec-CHHHHHHHHhCCC
Q 023080 118 IFNLLSKRLEAGQAGGESGFILDGFPR-TVKQAEILEEVMDIDLVVNLKL-CEDVLLEKCLGRR 179 (287)
Q Consensus 118 ~~~~l~~~l~~~~~~~~~g~Ildg~p~-~~~~~~~l~~~~~~d~vi~L~~-~~e~l~~Rl~~R~ 179 (287)
+...+...+..... ++.+|||--+. ...+.. ....--++|||.. +.+++.+||.+|+
T Consensus 215 v~seVe~i~~v~~~--Gk~vILDIDvQnGa~qlk---~~~~~~i~IFI~PPS~eeLe~RL~~RG 273 (337)
T 4dey_A 215 VQSEIERIFELART--LQLVVLDADTINHPAQLS---KTSLAPIVVYVKISSPKVLQRLIKSRG 273 (337)
T ss_dssp HHHHHHHHHHHTTT--CCEEEEEETTCCSGGGTT---TSSCCCEEEEECCSCHHHHHHHHHTTC
T ss_pred HHhHHHHHHHHHhC--CCEEEEEeCcHHHHHHHH---hcCCCCEEEEEECcCHHHHHHHHHhCC
Confidence 22333333333221 47899997655 544432 2221124566655 5789999998885
No 410
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.74 E-value=0.0075 Score=52.80 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+|+|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 66788899999999999999999776
No 411
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.71 E-value=0.0059 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+.++|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 35678999999999999999998764
No 412
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.71 E-value=0.0069 Score=49.28 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.++..|+|+|++|+||||+.++|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998853
No 413
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.70 E-value=0.0055 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..|+|.|+||+|||++|+.++...
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEEEECCCCchHHHHHHHHHHhC
Confidence 348899999999999999999854
No 414
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.70 E-value=0.0066 Score=49.69 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+..+|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999999864
No 415
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0067 Score=50.33 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....|+|+|.+|+||||+..+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998863
No 416
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.70 E-value=0.006 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.++|...
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5578999999999999999999763
No 417
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.69 E-value=0.0075 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
...+.|+|+|.+|+||||+...|..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999999975
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.66 E-value=0.0077 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+.+|+|+.||||||+.+.|.--++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999987654
No 419
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.62 E-value=0.0088 Score=55.29 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+|.+|+|+|++|+||||++..||..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788899999999999999999765
No 420
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.62 E-value=0.0038 Score=55.62 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
+..++|+|++||||||+.+.|+..+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34789999999999999999987663
No 421
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.60 E-value=0.0083 Score=59.26 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..++|+|+||+||||+++.|+..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45568999999999999999999987
No 422
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.60 E-value=0.0081 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+...|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 34678999999999999999998875
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.59 E-value=0.0068 Score=48.32 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+.|+|+|.+|+||||+..+|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 424
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.59 E-value=0.0086 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+...|+|+|.+|+||||+..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 35688999999999999999999763
No 425
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0087 Score=48.09 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+.|+|+|.+|+||||+.++|...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 55789999999999999999998653
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.56 E-value=0.0078 Score=49.35 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.....|+|+|.+|+||||+.++|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999864
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.55 E-value=0.007 Score=55.35 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+.-++.|+|+|||||||++..|+-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 556899999999999999998864
No 428
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.55 E-value=0.0076 Score=55.33 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
.+.++.|+|++||||||+.+.|+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4558999999999999999999863
No 429
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.0071 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+..+|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999999753
No 430
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.54 E-value=0.0072 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+|++.|++|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37788999999999999999999776
No 431
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.0081 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
++-.++|.|+||+||||+|..++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 556889999999999999988764
No 432
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.53 E-value=0.0086 Score=53.76 Aligned_cols=33 Identities=21% Similarity=0.058 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~ 85 (287)
++-++.|.|+|||||||++..++... .+.++++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 56688999999999999999998654 2445655
No 433
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.52 E-value=0.0088 Score=60.00 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..++|.||||+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999987
No 434
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.51 E-value=0.0065 Score=58.57 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFLGV 80 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~lg~ 80 (287)
..++|+|||||||||+++.|+..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 36899999999999999999998753
No 435
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.51 E-value=0.0079 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.+++|+|++|+||||+.+.|+..
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCEEEEECCCCccHHHHHHHHhcc
Confidence 457899999999999999999743
No 436
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.51 E-value=0.011 Score=52.10 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC--Ceeeh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGV--PHIAT 85 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~--~~i~~ 85 (287)
.++|.|++|+||||+++.+++..+. .+++.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 7899999999999999999988753 34444
No 437
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.0083 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.++|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999998763
No 438
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.46 E-value=0.0098 Score=53.16 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+++-++.|.|+|||||||++..|+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999986
No 439
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.46 E-value=0.0074 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3567899999999999999999863
No 440
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.45 E-value=0.0084 Score=49.17 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.+...|+|+|.+|+||||+.++|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4567899999999999999999874
No 441
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.43 E-value=0.0087 Score=54.10 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.2
Q ss_pred CCeEEEE--EcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVF--LGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi--~G~pGSGKTTla~~La~~l 78 (287)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4556777 9999999999999998875
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.43 E-value=0.0092 Score=52.38 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
...++|+|++||||||+.+.|+ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578999999999999999998 54
No 443
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0069 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....|+|+|.+|+||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECcCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.41 E-value=0.0097 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999875
No 445
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.40 E-value=0.011 Score=54.47 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.+|+|+|+.||||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999876
No 446
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.39 E-value=0.0064 Score=57.44 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..|+|+||+||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568999999999999999998765
No 447
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.38 E-value=0.0091 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.....|+|+|.+|+||||+..+|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3457899999999999999999865
No 448
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.37 E-value=0.0084 Score=55.22 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q 023080 57 WVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 57 Ivi~G~pGSGKTTla~~La~~ 77 (287)
++|+|++||||||+.+.|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999753
No 449
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.36 E-value=0.015 Score=48.88 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCC--eeehh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL---GVP--HIATG 86 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l---g~~--~i~~d 86 (287)
.+.|++.|++|+||||++-.++..+ |.. ++++|
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 4679999999999999988888765 543 44553
No 450
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.35 E-value=0.011 Score=47.97 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999864
No 451
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.35 E-value=0.0077 Score=48.22 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
.+...|+|+|.+|+||||+..+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 366789999999999999999884
No 452
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.32 E-value=0.0087 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.||+||||+...|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 457899999999999999999975
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.31 E-value=0.017 Score=48.06 Aligned_cols=27 Identities=19% Similarity=-0.023 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.+..+.+++|++||||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356788999999999999999998877
No 454
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.25 E-value=0.0086 Score=52.48 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+++|+|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 34789999999999999999964
No 455
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.25 E-value=0.0061 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+.|+|+|.+|+||||+.+.|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998653
No 456
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.24 E-value=0.011 Score=53.14 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~ 85 (287)
++.+++|.|+|||||||+|..|+... .+.++++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 55688999999999999999998754 3456666
No 457
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.24 E-value=0.011 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.++.|.|+|||||||++..|+...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 55689999999999999999999764
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.23 E-value=0.012 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++|.|++||||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78899999999999999998876
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.20 E-value=0.014 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+..+|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999998753
No 460
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.0092 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+...|+|+|.+|+||||+.++|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999864
No 461
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.19 E-value=0.0093 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+..+|+|+|+||+||||+.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 455899999999999999999974
No 462
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.18 E-value=0.014 Score=48.10 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHH-HHHHh
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASR-LSKFL 78 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~-La~~l 78 (287)
+.+...|+|+|.+|+||||+.++ +...+
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34667899999999999999998 44443
No 463
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.13 E-value=0.014 Score=47.22 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
....|+|+|.+|+||||+..+|...
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999754
No 464
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.12 E-value=0.013 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...|+|+|.||+||||+.++|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999753
No 465
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.10 E-value=0.0065 Score=48.24 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=11.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
....|+|+|.+|+||||+..+|..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEEECCCCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998864
No 466
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.09 E-value=0.014 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
++-++.|+|++||||||+.+.|+....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 666899999999999999999998864
No 467
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.09 E-value=0.016 Score=51.05 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-.++|.|+||+||||++..++...
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456689999999999999999998664
No 468
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.09 E-value=0.012 Score=51.90 Aligned_cols=25 Identities=20% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
++.++.|.|+|||||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999865
No 469
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.08 E-value=0.011 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
-.+.|+|+|++|+||||+.+.|+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999863
No 470
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.016 Score=55.95 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 50 PKDRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 50 ~~~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
...++-++.|+||.||||||+.+.|+-.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44567799999999999999999998654
No 471
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.08 E-value=0.014 Score=55.87 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
..+++|.|+|||||||++..|...+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998765
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.05 E-value=0.013 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-+++|+|+.||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999998644
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.02 E-value=0.015 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFLG 79 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~lg 79 (287)
.++-++.|+|++||||||+.+.|+..+.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3566899999999999999999998774
No 474
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.00 E-value=0.013 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
-+++|+||+||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 578999999999999999998765
No 475
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.99 E-value=0.016 Score=51.36 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=21.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 51 KDRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 51 ~~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
..+++.|+|+|.+|+||||+..+|..
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC
Confidence 34667899999999999999998853
No 476
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.97 E-value=0.014 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-.++|.||+||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998765
No 477
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.93 E-value=0.016 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.+.|+|+|.+||||||+.+.|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999754
No 478
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.91 E-value=0.012 Score=56.32 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-.++|+||+||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 44578999999999999999998765
No 479
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.016 Score=47.92 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
....|+|+|.+|+||||+..+|...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.88 E-value=0.016 Score=51.10 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCeeeh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFLGVPHIAT 85 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~lg~~~i~~ 85 (287)
...-++|.|++|+||||++..|.++ |...++-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 3456899999999999999999875 7666644
No 481
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.87 E-value=0.0061 Score=58.70 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCee
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFLGVPHI 83 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~lg~~~i 83 (287)
.|+|.|+||+|||++|+.+++.++...+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~ 356 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVY 356 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCcee
Confidence 6899999999999999999998765443
No 482
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=94.87 E-value=0.023 Score=48.28 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCCCCCeEEEEEcCC---------CCCHHHHHHHHHH
Q 023080 49 APKDRNVQWVFLGCP---------GVGKGTYASRLSK 76 (287)
Q Consensus 49 ~~~~~~~~Ivi~G~p---------GSGKTTla~~La~ 76 (287)
+...+...|+|+|.+ |+||||+.++|..
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 334466899999999 9999999999985
No 483
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.83 E-value=0.02 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
.++-.++|.|+||+||||++..++...
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 355689999999999999999988753
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.81 E-value=0.015 Score=54.92 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHH--HH
Q 023080 53 RNVQWVFLGCPGVGKGTYASR--LS 75 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~--La 75 (287)
++-+++|+|++||||||+++. ++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~ 62 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYN 62 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.76 E-value=0.022 Score=44.45 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 54 NVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 54 ~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+-+.+|+||.||||||+...|.=.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999888643
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.75 E-value=0.017 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023080 55 VQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 55 ~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
+.|+|+|.|||||||+.+.|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999754
No 487
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.74 E-value=0.019 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
.++..|.|+|+||+||||+.++|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3567899999999999999999987
No 488
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.68 E-value=0.023 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
..+..|+|+|+||+||||+.++|...
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC
Confidence 35689999999999999999999754
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.65 E-value=0.016 Score=55.06 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+|+.||||||+.+.|+-.+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998654
No 490
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.60 E-value=0.022 Score=50.42 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023080 56 QWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 56 ~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++.|.|+|||||||+|-.++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999988876543
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.60 E-value=0.0042 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=20.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
.....|+|+|.+|+||||+.++|.
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSB
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999988774
No 492
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.59 E-value=0.017 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
-.+.|+|+|++||||||+.+.|+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCC
Confidence 4466899999999999999999753
No 493
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.58 E-value=0.0073 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+..+++|+|++|+||||+.+.|+.
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 456899999999999999999863
No 494
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.57 E-value=0.029 Score=48.42 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLSKF 77 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La~~ 77 (287)
...+.|+|+|.+|+||||+...|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 35568999999999999999999753
No 495
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.55 E-value=0.013 Score=56.25 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-.+.|.|++||||||+.+.|+.-+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 44578999999999999999998765
No 496
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.55 E-value=0.021 Score=54.31 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-++.|+|+.||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999998654
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.53 E-value=0.0088 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023080 52 DRNVQWVFLGCPGVGKGTYASRLS 75 (287)
Q Consensus 52 ~~~~~Ivi~G~pGSGKTTla~~La 75 (287)
.....|+|+|.+|+||||+.++|.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCT
T ss_pred cCccEEEEECCCCCCHHHHHHHHh
Confidence 356789999999999999999886
No 498
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.47 E-value=0.022 Score=51.36 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCCeeehh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL-----GVPHIATG 86 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l-----g~~~i~~d 86 (287)
++-.+.|.|+|||||||+|..++... .+.++++.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 55678889999999999999998754 34566653
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.47 E-value=0.022 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSKFL 78 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~~l 78 (287)
++-+++|+||.||||||+.+.|+-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999999999998643
No 500
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.45 E-value=0.0076 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=6.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023080 53 RNVQWVFLGCPGVGKGTYASRLSK 76 (287)
Q Consensus 53 ~~~~Ivi~G~pGSGKTTla~~La~ 76 (287)
+...|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEC----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998864
Done!