BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023081
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 29/156 (18%)
Query: 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114
A ++ +Q DEA+E + L + A+ + L + Y K G DE IE ++
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYYQK 60
Query: 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174
L + P ++ NLG AY ++G+Y A Y+K
Sbjct: 61 ALEL---------DPR-----------------SAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
A +DP + +A NL + KQ Y EA + L
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 28/147 (19%)
Query: 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93
D + AI + KA+ R A ++ +Q DEA+E + L + A+ +
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN- 74
Query: 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153
L + Y K G DE IE ++ L + P ++
Sbjct: 75 -LGNAYYKQGDYDEAIEYYQKALEL---------DPR-----------------SAEAWY 107
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDP 180
NLG AY ++G+Y A Y+KA +DP
Sbjct: 108 NLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 27/116 (23%)
Query: 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154
L + Y K G DE IE ++ L + P + N
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALEL---------DPN-----------------NAEAWYN 48
Query: 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
LG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA + L
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 45 AINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104
A++ G+ + A ++ +Q DEA+E + L A+ + L + Y K G
Sbjct: 2 AMDPGNSAE-AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN--LGNAYYKQGD 58
Query: 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164
DE IE ++ L + P + NLG AY ++G+
Sbjct: 59 YDEAIEYYQKALEL---------DPN-----------------NAEAWYNLGNAYYKQGD 92
Query: 165 YTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQA 196
Y A Y+KA +DP+ +A NL + KQ
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 45/166 (27%)
Query: 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAV----EAIKSFRHLCSKQAQESL 91
E A+ L+ KA+ +A ++A VL+QQ ++ EA+ EAI+ +
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-------------I 72
Query: 92 DNVLIDLYKKCGRLDEQIELLKQKL----RMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147
D Y G ++++ ++ L R I AF A +H
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHS---------- 115
Query: 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCL 192
NL + GN A YR A + PD A CNL+HCL
Sbjct: 116 ------NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
NLG AY ++G+Y A Y+KA +DP + +A NL + KQ Y EA + L
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.4 bits (80), Expect = 0.040, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP+ +A NL + KQ Y EA
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Score = 28.9 bits (63), Expect = 3.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQA 196
NLG AY ++G+Y A Y+KA +DP +A NL + KQ
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDP-DANKACNLSHCLIKQARYTEARSVLEDVL 209
NLG AY ++G+Y A Y+KA +DP +A+ NL + KQ Y +A + L
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201
NLG AY ++G+Y A Y+KA +DP+ KA + KQ Y +A
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKA 96
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 27/116 (23%)
Query: 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154
L + Y K G DE IE ++ L + P + N
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELY---------PN-----------------NAEAWYN 48
Query: 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
LG AY ++G+Y A Y+KA + P+ +A NL + KQ Y EA + L
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209
NLG AY ++G+Y A Y+KA + P+ +A NL + KQ Y EA + L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------AQESLDNVLIDLYKKCGR 104
V + L +A+V + Q++ EA + + K +L+N+ + LY K G+
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV-LYGKRGK 100
Query: 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164
E L K+ L + E GK F V ++ L NL +G
Sbjct: 101 YKEAEPLCKRALEIR---EKVLGK-----------FHPDVAKQ----LSNLALLCQNQGK 142
Query: 165 YTSAEVVYRKAQLI--------DPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
E YR+A I DP+ K NL+ C +KQ +Y +A ++ +++L
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 35/174 (20%)
Query: 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------AQESLDNVLIDLYKKCGR 104
V + L +A+V + Q++ EA + + K +L+N+ + LY K G+
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV-LYGKRGK 100
Query: 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164
E L K+ L + E GK F V ++ L NL +G
Sbjct: 101 YKEAEPLCKRALEIR---EKVLGK-----------FHPDVAKQ----LNNLALLCQNQGK 142
Query: 165 YTSAEVVYRKAQLI--------DPDANKA-CNLSHCLIKQARYTEARSVLEDVL 209
E YR+A I DP+ K NL+ C +KQ +Y +A ++ +++L
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97
AI + +AI A ++A LK++ V EA + + LC A +SL+N L +
Sbjct: 256 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-DSLNN-LAN 313
Query: 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVK-QETSRILGNLG 156
+ ++ G ++E + L ++ L + A + + GK + + +E RI
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373
Query: 157 WAYMQKGN 164
AY GN
Sbjct: 374 DAYSNMGN 381
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--------DPDANKA-CNLSHCLIKQAR 197
+ ++ L NL +G Y E Y++A I DP+ K NL+ C +KQ +
Sbjct: 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK 210
Query: 198 YTEARSVLEDVL 209
+ +A ++ +++L
Sbjct: 211 FKQAETLYKEIL 222
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK-- 212
LG Y+Q+GN A+V RKA IDP + A H + TE L D K
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADA----HAALAVVFQTEXEPKLADEEYRKAL 98
Query: 213 LSGSTETKTINRVKELLQELEPWQSIPPSLTTKKSSLEDAFLEGLDDLMNQWTPYRSRRL 272
S S + +N L E + + E+A+ L+ + P RSR
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRY--------------EEAYQRLLEASQDTLYPERSR-- 142
Query: 273 PIFEEIS 279
+FE +
Sbjct: 143 -VFENLG 148
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185
LG Y+Q+GN A+V RKA IDP + A
Sbjct: 56 LGLGYLQRGNTEQAKVPLRKALEIDPSSADA 86
>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|D Chain D, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
Length = 153
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 66 QDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL-LKQKLRMIYHGE 123
+D V EA+ + + CS A ++L ++D ++K G++D+ EL L+++L + GE
Sbjct: 85 RDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDKIKELGLEKELEKMEKGE 143
>pdb|3NW0|A Chain A, Crystal Structure Of Mageg1 And Nse1 Complex
Length = 238
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 106 DEQIELLKQKLRMIYHGEAFNGKPTKTA----RSHGKKFQVTVKQETSRILGNL---GWA 158
+ +++L ++ L +I E T + GKK + K+E ++L W
Sbjct: 95 ENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMR---KKEAEQVLQKFVQNKWL 151
Query: 159 YMQKGNYT-SAEVVYRKAQLID---PDANKACNLSHCLIKQARYTEARSV 204
++G +T + Q I PDA K CN+ H L+ Q + E +
Sbjct: 152 IEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGI 201
>pdb|1Z0J|B Chain B, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 59
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 89 ESLDNVLIDLY--KKCGRLDEQIELLKQKLRMIYH 121
+ +DN+ ++ K+CGRLDE +E+L + LR + H
Sbjct: 16 QQIDNIKAYIFDAKQCGRLDE-VEVLTENLRELKH 49
>pdb|4IQD|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQD|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQE|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
pdb|4IQE|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
Length = 305
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 163 GNYTSAEVVYRKAQL-----------IDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211
G TS EV R L ID N++ ++ A +ED L
Sbjct: 70 GIVTSTEVAERARDLVRATDLPVLVDIDTGFGGVLNVARTAVEXVEAKVAAVQIEDQQLP 129
Query: 212 KLSGSTETKTINRVKELLQELEPWQSIPPSLTTKKSSLEDA-FLEGLDDLMNQWTPY 267
K G K + +EL+Q+++ + + PSL + DA +EGLD+ + + Y
Sbjct: 130 KKCGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVART--DARGVEGLDEAIERANAY 184
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD------ANKACNLSHCLIKQ 195
+++K +++ I N GW + N + + Y L DP AN N C KQ
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN--LNKGICSAKQ 126
Query: 196 ARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232
++ A + L+ L + K + R K L +L
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163
>pdb|3LS4|L Chain L, Crystal Structure Of Anti-Tetrahydrocannabinol Fab
Fragment With Thc
pdb|3LS5|L Chain L, Anti-Tetrahydrocannabinol Fab Fragment, Free Form
Length = 215
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177
PT A S G+K +T +S L W Y QK ++ ++YR + L
Sbjct: 8 PTTMAASPGEKITITCSASSSISSNYLHW-YQQKPGFSPKLLIYRTSNL 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,140,761
Number of Sequences: 62578
Number of extensions: 310033
Number of successful extensions: 999
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 59
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)