Query 023081
Match_columns 287
No_of_seqs 425 out of 2654
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023081.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023081hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 6.8E-27 1.5E-31 193.2 16.2 221 8-234 207-437 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 3.8E-25 8.1E-30 183.0 20.5 201 8-211 241-451 (966)
3 KOG1126 DNA-binding cell divis 99.9 1.8E-21 3.9E-26 162.5 16.5 205 10-217 412-626 (638)
4 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-20 5.1E-25 165.7 24.3 195 15-212 327-538 (615)
5 TIGR00990 3a0801s09 mitochondr 99.9 8.6E-20 1.9E-24 162.1 25.7 197 13-212 285-497 (615)
6 COG3063 PilF Tfp pilus assembl 99.9 1.7E-19 3.6E-24 132.9 20.5 168 19-212 35-203 (250)
7 PRK15174 Vi polysaccharide exp 99.9 5E-19 1.1E-23 157.2 27.1 197 11-211 102-313 (656)
8 PRK12370 invasion protein regu 99.8 2.9E-19 6.3E-24 156.2 22.5 177 6-210 282-469 (553)
9 PRK11189 lipoprotein NlpI; Pro 99.8 2.7E-18 5.8E-23 138.6 24.2 198 8-212 49-266 (296)
10 PRK15174 Vi polysaccharide exp 99.8 5.1E-18 1.1E-22 150.9 26.9 203 7-212 64-280 (656)
11 TIGR02521 type_IV_pilW type IV 99.8 5.2E-18 1.1E-22 132.5 23.7 169 17-211 29-198 (234)
12 TIGR02917 PEP_TPR_lipo putativ 99.8 9E-18 1.9E-22 155.6 27.4 200 10-212 456-665 (899)
13 PRK09782 bacteriophage N4 rece 99.8 1.2E-17 2.6E-22 152.4 27.1 200 9-213 500-708 (987)
14 KOG1126 DNA-binding cell divis 99.8 1.4E-18 2.9E-23 145.5 18.7 176 34-212 334-553 (638)
15 KOG1155 Anaphase-promoting com 99.8 2.6E-18 5.5E-23 138.3 19.1 166 19-212 330-496 (559)
16 KOG1125 TPR repeat-containing 99.8 1.3E-18 2.8E-23 143.5 17.3 190 18-212 285-494 (579)
17 PRK11447 cellulose synthase su 99.8 1.4E-17 3E-22 157.2 26.4 204 7-212 373-667 (1157)
18 PRK11788 tetratricopeptide rep 99.8 2.9E-17 6.3E-22 138.6 25.6 203 7-212 57-279 (389)
19 KOG0547 Translocase of outer m 99.8 3.5E-18 7.6E-23 138.4 18.3 206 4-212 345-567 (606)
20 KOG1173 Anaphase-promoting com 99.8 6E-18 1.3E-22 139.2 20.0 201 10-212 303-519 (611)
21 TIGR02917 PEP_TPR_lipo putativ 99.8 5.5E-17 1.2E-21 150.4 28.9 198 11-211 559-765 (899)
22 TIGR02521 type_IV_pilW type IV 99.8 1.6E-17 3.4E-22 129.7 21.5 178 8-211 54-232 (234)
23 KOG1155 Anaphase-promoting com 99.8 1E-17 2.3E-22 134.8 20.5 192 10-236 355-554 (559)
24 PRK11447 cellulose synthase su 99.8 1.6E-17 3.5E-22 156.8 25.0 204 7-212 291-525 (1157)
25 PRK12370 invasion protein regu 99.8 7.6E-18 1.6E-22 147.4 20.9 177 7-212 326-503 (553)
26 PRK11788 tetratricopeptide rep 99.8 2.3E-16 5E-21 133.1 24.8 192 20-212 108-312 (389)
27 PRK09782 bacteriophage N4 rece 99.8 1.4E-16 3E-21 145.5 24.6 196 13-212 536-741 (987)
28 PRK11189 lipoprotein NlpI; Pro 99.8 2.2E-17 4.7E-22 133.3 16.6 176 5-185 84-273 (296)
29 COG3063 PilF Tfp pilus assembl 99.8 1.4E-16 3.1E-21 117.6 17.0 183 2-211 52-236 (250)
30 TIGR03302 OM_YfiO outer membra 99.8 3.5E-16 7.7E-21 122.7 20.6 188 15-211 29-232 (235)
31 KOG1125 TPR repeat-containing 99.8 6.9E-17 1.5E-21 133.5 17.0 178 9-212 309-528 (579)
32 KOG0624 dsRNA-activated protei 99.7 6.4E-16 1.4E-20 120.5 19.6 199 15-219 34-257 (504)
33 KOG0547 Translocase of outer m 99.7 3.5E-16 7.6E-21 126.9 17.5 172 8-182 383-570 (606)
34 PRK15359 type III secretion sy 99.7 2E-16 4.2E-21 113.7 14.4 125 39-194 13-138 (144)
35 COG2956 Predicted N-acetylgluc 99.7 5.7E-15 1.2E-19 114.2 22.0 201 8-212 58-279 (389)
36 PF13429 TPR_15: Tetratricopep 99.7 1.6E-16 3.6E-21 127.8 13.9 198 9-211 68-277 (280)
37 PRK10747 putative protoheme IX 99.7 5.6E-15 1.2E-19 124.3 23.6 199 10-211 143-390 (398)
38 TIGR00540 hemY_coli hemY prote 99.7 4.2E-15 9E-20 125.7 21.3 201 10-211 143-399 (409)
39 KOG0624 dsRNA-activated protei 99.7 7.6E-15 1.6E-19 114.6 20.5 123 142-268 296-426 (504)
40 PF13429 TPR_15: Tetratricopep 99.7 3.5E-16 7.6E-21 125.9 13.7 213 15-235 40-264 (280)
41 KOG1174 Anaphase-promoting com 99.7 1.3E-14 2.7E-19 115.9 21.8 215 11-235 292-517 (564)
42 PLN02789 farnesyltranstransfer 99.7 1.1E-14 2.4E-19 117.6 21.2 173 11-211 63-250 (320)
43 KOG1840 Kinesin light chain [C 99.7 3.8E-15 8.2E-20 125.6 19.1 181 14-212 194-397 (508)
44 KOG2076 RNA polymerase III tra 99.7 3.8E-14 8.2E-19 122.8 24.7 224 6-234 160-498 (895)
45 PRK15359 type III secretion sy 99.7 1.5E-15 3.2E-20 109.2 13.3 107 10-121 18-124 (144)
46 PRK10049 pgaA outer membrane p 99.7 1.1E-14 2.4E-19 132.2 22.1 200 11-212 225-457 (765)
47 KOG1173 Anaphase-promoting com 99.7 1.8E-14 3.9E-19 119.0 20.9 208 11-225 270-495 (611)
48 KOG2002 TPR-containing nuclear 99.7 9.1E-15 2E-19 127.5 19.3 206 7-215 152-375 (1018)
49 COG5010 TadD Flp pilus assembl 99.7 1.2E-14 2.5E-19 109.7 17.3 172 9-209 57-229 (257)
50 KOG1129 TPR repeat-containing 99.7 8.5E-16 1.8E-20 119.1 11.3 201 9-212 247-459 (478)
51 PRK10370 formate-dependent nit 99.7 2.8E-14 6.1E-19 107.9 19.4 155 26-219 23-181 (198)
52 PRK14574 hmsH outer membrane p 99.7 4.3E-14 9.2E-19 127.0 23.8 246 12-265 27-282 (822)
53 PRK10370 formate-dependent nit 99.7 9.6E-15 2.1E-19 110.5 15.6 125 32-184 52-179 (198)
54 PRK15179 Vi polysaccharide bio 99.6 1.7E-14 3.7E-19 127.3 18.8 150 7-184 74-223 (694)
55 PLN02789 farnesyltranstransfer 99.6 5.7E-14 1.2E-18 113.5 19.2 173 19-219 37-220 (320)
56 KOG1129 TPR repeat-containing 99.6 9.1E-14 2E-18 108.0 19.1 190 23-219 227-429 (478)
57 PRK15179 Vi polysaccharide bio 99.6 2E-13 4.3E-18 120.6 22.1 160 25-212 55-218 (694)
58 TIGR02552 LcrH_SycD type III s 99.6 6E-14 1.3E-18 100.2 15.1 118 40-185 4-121 (135)
59 PRK10049 pgaA outer membrane p 99.6 1.8E-13 3.9E-18 124.4 21.2 168 14-210 10-178 (765)
60 TIGR03302 OM_YfiO outer membra 99.6 6.3E-14 1.4E-18 109.9 16.0 151 7-180 55-234 (235)
61 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 109.9 24.3 173 7-182 106-296 (409)
62 TIGR02552 LcrH_SycD type III s 99.6 1.4E-13 3E-18 98.3 15.0 127 74-228 4-131 (135)
63 KOG2003 TPR repeat-containing 99.6 2.7E-13 5.8E-18 109.8 17.9 198 11-212 482-690 (840)
64 PRK15363 pathogenicity island 99.6 2E-13 4.4E-18 96.5 15.2 127 80-234 27-155 (157)
65 KOG1840 Kinesin light chain [C 99.6 4E-13 8.6E-18 113.6 19.4 201 15-234 237-465 (508)
66 KOG2002 TPR-containing nuclear 99.6 9.9E-13 2.1E-17 115.1 22.0 200 12-212 263-526 (1018)
67 KOG0550 Molecular chaperone (D 99.6 1.9E-13 4E-18 109.2 15.4 225 19-270 169-407 (486)
68 COG2956 Predicted N-acetylgluc 99.5 4.9E-12 1.1E-16 98.2 21.2 192 19-212 35-244 (389)
69 KOG4162 Predicted calmodulin-b 99.5 5E-12 1.1E-16 108.3 23.1 77 10-86 469-546 (799)
70 KOG0553 TPR repeat-containing 99.5 1E-13 2.2E-18 106.7 11.6 127 55-209 83-213 (304)
71 KOG2076 RNA polymerase III tra 99.5 2.2E-12 4.7E-17 112.2 20.7 165 19-211 139-309 (895)
72 KOG0548 Molecular co-chaperone 99.5 2.7E-12 5.8E-17 105.8 20.1 193 18-212 223-456 (539)
73 PRK10747 putative protoheme IX 99.5 1E-11 2.3E-16 104.6 24.2 201 8-211 103-357 (398)
74 cd05804 StaR_like StaR_like; a 99.5 1.7E-12 3.7E-17 108.2 18.9 193 15-211 2-215 (355)
75 KOG0495 HAT repeat protein [RN 99.5 5.1E-12 1.1E-16 106.6 20.7 214 5-222 604-857 (913)
76 KOG0495 HAT repeat protein [RN 99.5 7.7E-12 1.7E-16 105.5 21.2 205 10-221 676-890 (913)
77 COG4783 Putative Zn-dependent 99.5 9.7E-12 2.1E-16 101.7 21.2 135 49-211 302-437 (484)
78 cd05804 StaR_like StaR_like; a 99.5 2.2E-12 4.7E-17 107.6 18.1 160 18-181 42-218 (355)
79 KOG0553 TPR repeat-containing 99.5 7E-13 1.5E-17 102.2 13.2 99 21-121 83-181 (304)
80 KOG3060 Uncharacterized conser 99.5 2E-11 4.3E-16 91.8 19.7 155 55-213 54-222 (289)
81 COG5010 TadD Flp pilus assembl 99.5 9.2E-12 2E-16 94.2 18.1 147 36-211 50-197 (257)
82 PRK15363 pathogenicity island 99.5 6.7E-13 1.5E-17 93.9 11.2 105 13-119 28-133 (157)
83 COG4783 Putative Zn-dependent 99.5 3.2E-11 6.9E-16 98.8 20.8 174 13-233 300-473 (484)
84 KOG2003 TPR repeat-containing 99.4 7.4E-12 1.6E-16 101.6 16.1 188 7-197 511-709 (840)
85 PRK14574 hmsH outer membrane p 99.4 1.2E-11 2.7E-16 111.4 19.3 168 4-174 53-228 (822)
86 PF13525 YfiO: Outer membrane 99.4 3.1E-11 6.8E-16 92.0 18.9 176 18-202 4-198 (203)
87 KOG1127 TPR repeat-containing 99.4 4.1E-12 8.8E-17 111.5 15.1 178 32-212 471-660 (1238)
88 KOG1174 Anaphase-promoting com 99.4 6.8E-11 1.5E-15 94.9 20.7 201 10-213 223-469 (564)
89 KOG3060 Uncharacterized conser 99.4 4.4E-11 9.6E-16 90.0 17.6 147 11-185 78-227 (289)
90 PRK10866 outer membrane biogen 99.4 1.2E-10 2.6E-15 90.9 21.0 183 18-209 31-239 (243)
91 KOG0550 Molecular chaperone (D 99.4 8.7E-12 1.9E-16 99.8 14.3 154 2-181 186-353 (486)
92 KOG1128 Uncharacterized conser 99.4 9.9E-12 2.1E-16 106.0 14.5 175 7-216 446-621 (777)
93 PLN03088 SGT1, suppressor of 99.4 1.6E-11 3.5E-16 101.6 15.1 98 22-121 5-102 (356)
94 PLN03218 maturation of RBCL 1; 99.4 1.1E-09 2.3E-14 101.7 26.8 155 55-211 581-748 (1060)
95 PLN03088 SGT1, suppressor of 99.4 3.1E-11 6.8E-16 99.8 14.9 112 56-195 5-117 (356)
96 KOG0548 Molecular co-chaperone 99.4 4.6E-11 9.9E-16 98.7 15.5 161 21-209 300-487 (539)
97 PRK14720 transcript cleavage f 99.4 1.1E-10 2.5E-15 104.5 18.9 189 10-212 56-284 (906)
98 COG3071 HemY Uncharacterized e 99.3 1.4E-09 3.1E-14 87.0 22.8 192 20-212 154-391 (400)
99 PRK10153 DNA-binding transcrip 99.3 9.6E-11 2.1E-15 100.9 17.1 145 12-185 330-489 (517)
100 KOG1156 N-terminal acetyltrans 99.3 3.4E-10 7.4E-15 95.6 19.7 202 10-213 32-250 (700)
101 PLN03218 maturation of RBCL 1; 99.3 3.1E-09 6.6E-14 98.8 27.5 188 20-210 473-677 (1060)
102 PRK02603 photosystem I assembl 99.3 1.1E-10 2.3E-15 86.9 14.5 84 20-105 36-122 (172)
103 PF12569 NARP1: NMDA receptor- 99.3 2E-09 4.2E-14 92.4 23.2 193 18-212 3-258 (517)
104 KOG1128 Uncharacterized conser 99.3 1.4E-10 3.1E-15 99.1 16.0 185 16-212 395-583 (777)
105 COG4235 Cytochrome c biogenesi 99.3 8.6E-11 1.9E-15 91.3 13.4 111 9-121 146-259 (287)
106 PF13414 TPR_11: TPR repeat; P 99.3 1.3E-11 2.9E-16 77.0 7.3 67 18-84 2-69 (69)
107 KOG1156 N-terminal acetyltrans 99.3 2.2E-10 4.8E-15 96.7 16.5 169 16-212 4-173 (700)
108 PF09976 TPR_21: Tetratricopep 99.3 5E-10 1.1E-14 80.8 16.3 129 21-176 13-145 (145)
109 CHL00033 ycf3 photosystem I as 99.3 2E-10 4.4E-15 85.1 14.4 107 11-119 25-143 (168)
110 cd00189 TPR Tetratricopeptide 99.3 8E-11 1.7E-15 78.1 11.0 98 21-120 2-99 (100)
111 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.6E-10 3.4E-15 80.5 12.5 103 19-121 2-108 (119)
112 PF04733 Coatomer_E: Coatomer 99.3 9.1E-11 2E-15 93.9 12.5 186 18-211 65-265 (290)
113 KOG4340 Uncharacterized conser 99.3 5.8E-10 1.3E-14 86.2 15.8 176 30-212 21-208 (459)
114 PRK14720 transcript cleavage f 99.3 6.9E-10 1.5E-14 99.6 18.7 136 14-178 26-178 (906)
115 PLN03081 pentatricopeptide (PP 99.3 8.5E-10 1.9E-14 100.0 19.8 185 17-211 257-455 (697)
116 TIGR02795 tol_pal_ybgF tol-pal 99.3 3.3E-10 7.3E-15 78.8 13.5 109 54-185 3-112 (119)
117 PF12895 Apc3: Anaphase-promot 99.2 6.2E-11 1.4E-15 77.0 8.5 81 32-115 2-84 (84)
118 PF13432 TPR_16: Tetratricopep 99.2 5.4E-11 1.2E-15 73.2 7.5 65 23-87 1-65 (65)
119 KOG4162 Predicted calmodulin-b 99.2 4E-10 8.7E-15 96.9 14.7 129 55-211 652-783 (799)
120 PF13525 YfiO: Outer membrane 99.2 2.1E-09 4.5E-14 82.1 17.1 159 52-233 4-192 (203)
121 PF13414 TPR_11: TPR repeat; P 99.2 1.1E-10 2.4E-15 72.7 8.5 67 52-120 2-69 (69)
122 PLN03077 Protein ECB2; Provisi 99.2 1.9E-09 4.1E-14 100.0 20.2 185 18-212 523-721 (857)
123 PLN03081 pentatricopeptide (PP 99.2 8.6E-10 1.9E-14 100.0 17.5 188 16-212 357-558 (697)
124 CHL00033 ycf3 photosystem I as 99.2 8.1E-10 1.8E-14 81.9 14.4 125 32-182 12-153 (168)
125 KOG1127 TPR repeat-containing 99.2 6.6E-10 1.4E-14 98.0 15.7 198 12-212 412-626 (1238)
126 cd00189 TPR Tetratricopeptide 99.2 3.9E-10 8.5E-15 74.6 11.1 98 55-180 2-99 (100)
127 PRK10866 outer membrane biogen 99.2 7.6E-09 1.7E-13 80.9 19.7 162 51-235 30-228 (243)
128 COG4235 Cytochrome c biogenesi 99.2 1.2E-09 2.7E-14 84.9 14.9 124 68-219 137-264 (287)
129 KOG2376 Signal recognition par 99.2 5.9E-09 1.3E-13 87.4 19.6 215 10-234 37-273 (652)
130 PF14938 SNAP: Soluble NSF att 99.2 5.2E-09 1.1E-13 84.1 18.4 173 19-212 35-226 (282)
131 PRK15331 chaperone protein Sic 99.2 2.6E-09 5.7E-14 76.1 14.1 116 90-235 38-154 (165)
132 COG4700 Uncharacterized protei 99.2 1E-08 2.2E-13 73.9 16.9 168 26-220 63-231 (251)
133 PRK11906 transcriptional regul 99.2 6.9E-09 1.5E-13 85.7 18.4 166 14-208 243-433 (458)
134 KOG1130 Predicted G-alpha GTPa 99.2 4.1E-10 8.9E-15 90.6 10.6 173 18-212 134-345 (639)
135 KOG1915 Cell cycle control pro 99.2 3.1E-08 6.6E-13 81.4 21.3 206 6-212 309-537 (677)
136 PF12895 Apc3: Anaphase-promot 99.1 5.7E-10 1.2E-14 72.4 9.4 84 65-175 1-84 (84)
137 PF09976 TPR_21: Tetratricopep 99.1 7.6E-09 1.6E-13 74.6 15.8 121 65-209 23-145 (145)
138 PRK10803 tol-pal system protei 99.1 2.4E-09 5.2E-14 84.3 13.3 103 19-121 142-249 (263)
139 PF13432 TPR_16: Tetratricopep 99.1 6.6E-10 1.4E-14 68.3 8.0 64 94-183 2-65 (65)
140 PRK02603 photosystem I assembl 99.1 1.1E-08 2.4E-13 76.1 15.8 97 52-174 34-131 (172)
141 PRK10803 tol-pal system protei 99.1 5E-09 1.1E-13 82.5 14.5 107 54-183 143-251 (263)
142 PF12688 TPR_5: Tetratrico pep 99.1 8.3E-09 1.8E-13 70.8 13.1 97 19-117 1-103 (120)
143 PLN03077 Protein ECB2; Provisi 99.1 7.2E-08 1.6E-12 89.6 22.8 89 146-235 551-641 (857)
144 PRK15331 chaperone protein Sic 99.0 2E-09 4.3E-14 76.8 9.2 102 15-118 33-134 (165)
145 PF12569 NARP1: NMDA receptor- 99.0 9.8E-08 2.1E-12 82.1 21.1 196 15-211 34-291 (517)
146 COG3071 HemY Uncharacterized e 99.0 7E-07 1.5E-11 71.9 23.8 213 16-235 115-377 (400)
147 KOG1915 Cell cycle control pro 99.0 4E-08 8.7E-13 80.7 17.0 207 3-213 57-275 (677)
148 COG4785 NlpI Lipoprotein NlpI, 99.0 6.2E-09 1.3E-13 76.9 11.1 104 4-110 84-187 (297)
149 PF14559 TPR_19: Tetratricopep 99.0 2.2E-09 4.8E-14 66.6 7.5 66 30-97 2-67 (68)
150 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.2E-08 4.7E-13 83.0 15.1 121 58-209 174-295 (395)
151 KOG0543 FKBP-type peptidyl-pro 99.0 1.3E-08 2.8E-13 82.2 13.3 97 90-212 258-356 (397)
152 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.4E-08 5.2E-13 82.7 15.2 118 27-175 177-294 (395)
153 KOG1130 Predicted G-alpha GTPa 99.0 1.5E-09 3.2E-14 87.5 7.6 186 26-212 24-265 (639)
154 KOG0543 FKBP-type peptidyl-pro 99.0 2.7E-08 5.8E-13 80.4 14.2 60 152-211 260-320 (397)
155 COG4105 ComL DNA uptake lipopr 99.0 3.4E-07 7.3E-12 70.1 19.3 190 18-217 33-238 (254)
156 PF14938 SNAP: Soluble NSF att 99.0 2E-08 4.3E-13 80.8 13.6 173 19-211 75-266 (282)
157 PRK10153 DNA-binding transcrip 99.0 9.1E-08 2E-12 82.7 17.9 139 48-213 332-484 (517)
158 KOG3081 Vesicle coat complex C 98.9 4.4E-07 9.4E-12 69.4 18.8 202 22-231 75-290 (299)
159 PF12688 TPR_5: Tetratrico pep 98.9 7.1E-08 1.5E-12 66.3 13.2 101 54-177 2-103 (120)
160 KOG3785 Uncharacterized conser 98.9 5.2E-08 1.1E-12 77.3 14.0 176 29-212 32-215 (557)
161 PF04733 Coatomer_E: Coatomer 98.9 2.8E-08 6.1E-13 79.7 12.7 159 22-186 105-273 (290)
162 COG1729 Uncharacterized protei 98.9 2.5E-08 5.5E-13 76.8 11.8 102 20-121 142-247 (262)
163 PF13371 TPR_9: Tetratricopept 98.9 1.1E-08 2.5E-13 64.4 8.1 63 25-87 1-63 (73)
164 KOG1070 rRNA processing protei 98.9 2.8E-07 6.1E-12 84.6 19.3 204 4-211 1443-1663(1710)
165 PRK11906 transcriptional regul 98.9 1.2E-07 2.7E-12 78.5 15.6 112 8-121 281-404 (458)
166 PF13512 TPR_18: Tetratricopep 98.9 1.1E-07 2.3E-12 66.5 12.2 104 18-121 9-131 (142)
167 COG1729 Uncharacterized protei 98.8 1.1E-07 2.4E-12 73.3 12.9 65 56-120 144-209 (262)
168 PF13424 TPR_12: Tetratricopep 98.8 2E-08 4.4E-13 64.1 6.6 69 90-178 6-75 (78)
169 KOG2376 Signal recognition par 98.8 5.9E-07 1.3E-11 75.8 16.5 160 21-212 14-205 (652)
170 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 3.5E-08 7.6E-13 81.5 9.2 70 14-83 70-142 (453)
171 COG4700 Uncharacterized protei 98.8 9.4E-07 2E-11 64.1 14.6 138 12-177 83-221 (251)
172 PF13512 TPR_18: Tetratricopep 98.8 5E-07 1.1E-11 63.2 13.0 108 52-182 9-132 (142)
173 KOG2047 mRNA splicing factor [ 98.8 5.5E-06 1.2E-10 70.9 21.3 190 11-212 341-541 (835)
174 PF14559 TPR_19: Tetratricopep 98.8 4.4E-08 9.5E-13 60.7 6.9 61 100-186 2-62 (68)
175 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.5E-08 1.4E-12 79.9 9.2 70 142-211 68-141 (453)
176 PF13424 TPR_12: Tetratricopep 98.7 5.8E-08 1.3E-12 62.0 7.2 69 51-119 3-76 (78)
177 KOG4234 TPR repeat-containing 98.7 3.9E-07 8.4E-12 66.7 12.0 104 55-184 97-203 (271)
178 PF13371 TPR_9: Tetratricopept 98.7 8.7E-08 1.9E-12 60.3 7.4 64 96-185 2-65 (73)
179 KOG4555 TPR repeat-containing 98.7 2E-06 4.4E-11 58.5 14.1 98 23-120 47-146 (175)
180 COG4105 ComL DNA uptake lipopr 98.7 1E-05 2.2E-10 62.1 19.1 161 52-235 33-220 (254)
181 PRK04841 transcriptional regul 98.7 5.1E-06 1.1E-10 78.1 21.1 173 21-211 454-641 (903)
182 COG0457 NrfG FOG: TPR repeat [ 98.6 1.7E-05 3.6E-10 61.4 20.3 199 11-212 49-266 (291)
183 KOG4234 TPR repeat-containing 98.6 2.2E-06 4.7E-11 62.9 12.8 99 21-121 97-200 (271)
184 PRK04841 transcriptional regul 98.6 6.7E-06 1.5E-10 77.3 19.3 174 19-212 409-603 (903)
185 COG4785 NlpI Lipoprotein NlpI, 98.6 5.8E-06 1.3E-10 61.5 14.5 186 19-211 65-266 (297)
186 KOG4340 Uncharacterized conser 98.6 2.4E-06 5.3E-11 66.6 13.1 164 12-178 37-207 (459)
187 KOG4648 Uncharacterized conser 98.6 2.2E-07 4.7E-12 73.6 7.1 186 22-211 100-296 (536)
188 KOG4555 TPR repeat-containing 98.6 2.4E-06 5.1E-11 58.2 11.0 104 56-183 46-149 (175)
189 KOG2796 Uncharacterized conser 98.5 2.1E-05 4.7E-10 60.3 17.0 137 54-212 178-316 (366)
190 PF04184 ST7: ST7 protein; In 98.5 1.1E-05 2.5E-10 67.2 16.4 186 10-230 193-426 (539)
191 KOG1941 Acetylcholine receptor 98.5 3.6E-06 7.8E-11 67.3 12.9 178 19-212 83-276 (518)
192 KOG3785 Uncharacterized conser 98.5 7.9E-06 1.7E-10 65.3 14.6 138 20-187 58-223 (557)
193 COG0457 NrfG FOG: TPR repeat [ 98.5 4.8E-05 1E-09 58.8 19.4 192 18-212 21-232 (291)
194 PF06552 TOM20_plant: Plant sp 98.5 1.9E-06 4.1E-11 62.4 10.1 97 69-186 7-117 (186)
195 KOG4648 Uncharacterized conser 98.5 4.8E-07 1E-11 71.7 7.2 96 93-214 101-197 (536)
196 KOG1586 Protein required for f 98.5 9.7E-05 2.1E-09 55.8 18.3 173 19-212 34-225 (288)
197 KOG2053 Mitochondrial inherita 98.4 0.00035 7.6E-09 62.4 23.8 210 7-224 31-265 (932)
198 KOG4642 Chaperone-dependent E3 98.4 1.6E-06 3.5E-11 65.3 7.8 96 22-119 13-108 (284)
199 KOG1941 Acetylcholine receptor 98.4 2E-05 4.3E-10 63.2 14.2 173 19-211 122-320 (518)
200 PF13428 TPR_14: Tetratricopep 98.4 1.1E-06 2.4E-11 49.0 5.2 42 20-61 2-43 (44)
201 PF05843 Suf: Suppressor of fo 98.4 4.4E-05 9.6E-10 61.3 16.3 139 21-184 3-142 (280)
202 PF13428 TPR_14: Tetratricopep 98.3 1.4E-06 3E-11 48.6 5.0 42 149-190 1-43 (44)
203 KOG1585 Protein required for f 98.3 0.00012 2.7E-09 55.6 16.2 183 19-221 31-230 (308)
204 PF06552 TOM20_plant: Plant sp 98.3 5.8E-06 1.3E-10 59.9 8.8 85 35-121 7-112 (186)
205 PF10300 DUF3808: Protein of u 98.3 9.9E-05 2.1E-09 63.7 18.0 156 32-212 201-377 (468)
206 KOG2796 Uncharacterized conser 98.3 2.1E-05 4.6E-10 60.3 12.2 136 21-182 179-319 (366)
207 KOG1070 rRNA processing protei 98.3 0.00014 3E-09 67.8 19.0 147 30-180 1508-1665(1710)
208 PF13431 TPR_17: Tetratricopep 98.3 9.9E-07 2.1E-11 46.0 3.1 32 42-73 2-33 (34)
209 KOG2047 mRNA splicing factor [ 98.3 0.00021 4.4E-09 61.7 18.2 193 18-211 386-615 (835)
210 COG3118 Thioredoxin domain-con 98.3 0.00016 3.4E-09 56.7 16.1 161 19-207 134-297 (304)
211 COG3898 Uncharacterized membra 98.2 0.0007 1.5E-08 55.2 19.8 180 31-212 166-393 (531)
212 PF00515 TPR_1: Tetratricopept 98.2 3.1E-06 6.8E-11 44.2 4.7 34 149-182 1-34 (34)
213 PF13281 DUF4071: Domain of un 98.2 0.00045 9.7E-09 56.9 19.0 169 20-220 142-340 (374)
214 KOG2610 Uncharacterized conser 98.2 8.2E-05 1.8E-09 59.2 13.9 153 31-209 115-274 (491)
215 PF07719 TPR_2: Tetratricopept 98.2 5.6E-06 1.2E-10 43.2 4.9 34 149-182 1-34 (34)
216 COG3898 Uncharacterized membra 98.2 0.0015 3.2E-08 53.4 20.3 160 19-182 120-296 (531)
217 PF04184 ST7: ST7 protein; In 98.2 0.00055 1.2E-08 57.5 18.3 170 17-212 166-376 (539)
218 PF03704 BTAD: Bacterial trans 98.1 0.00061 1.3E-08 49.1 15.5 108 96-211 13-125 (146)
219 PF00515 TPR_1: Tetratricopept 98.1 1.2E-05 2.6E-10 41.9 4.9 32 54-85 2-33 (34)
220 KOG2471 TPR repeat-containing 98.1 2.9E-05 6.2E-10 64.7 9.2 164 23-194 210-381 (696)
221 KOG4642 Chaperone-dependent E3 98.1 2E-05 4.4E-10 59.5 7.5 91 96-212 17-108 (284)
222 KOG3081 Vesicle coat complex C 98.1 0.0015 3.3E-08 50.5 17.2 192 27-225 16-247 (299)
223 PF05843 Suf: Suppressor of fo 98.0 0.00023 5.1E-09 57.2 13.9 131 54-212 2-137 (280)
224 KOG3617 WD40 and TPR repeat-co 98.0 0.00065 1.4E-08 60.4 17.1 171 22-210 803-995 (1416)
225 KOG1586 Protein required for f 98.0 0.0012 2.6E-08 50.1 16.0 148 18-185 73-231 (288)
226 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.3E-10 41.5 4.6 32 54-85 2-33 (34)
227 KOG3617 WD40 and TPR repeat-co 98.0 0.00062 1.3E-08 60.6 16.5 144 25-177 832-995 (1416)
228 COG2976 Uncharacterized protei 98.0 0.001 2.2E-08 49.0 15.1 116 71-211 70-188 (207)
229 PF03704 BTAD: Bacterial trans 98.0 0.00059 1.3E-08 49.1 13.3 94 24-119 11-126 (146)
230 PF13431 TPR_17: Tetratricopep 97.9 1.1E-05 2.4E-10 42.0 2.7 29 141-169 5-33 (34)
231 PF10300 DUF3808: Protein of u 97.9 0.00075 1.6E-08 58.3 15.5 122 32-178 246-376 (468)
232 KOG0545 Aryl-hydrocarbon recep 97.9 0.00021 4.5E-09 54.4 9.5 101 19-121 178-296 (329)
233 COG2976 Uncharacterized protei 97.8 0.0028 6E-08 46.8 14.9 101 56-183 92-193 (207)
234 KOG2610 Uncharacterized conser 97.8 0.00078 1.7E-08 53.8 12.8 63 148-210 174-237 (491)
235 KOG1585 Protein required for f 97.8 0.0019 4E-08 49.4 14.2 137 53-210 31-178 (308)
236 PF08424 NRDE-2: NRDE-2, neces 97.8 0.0056 1.2E-07 50.3 18.2 167 6-182 6-187 (321)
237 KOG2053 Mitochondrial inherita 97.8 0.00095 2.1E-08 59.7 14.2 90 30-121 20-109 (932)
238 KOG0551 Hsp90 co-chaperone CNS 97.8 0.0014 3.1E-08 52.3 13.3 98 21-120 83-184 (390)
239 PF04910 Tcf25: Transcriptiona 97.8 0.0017 3.7E-08 54.0 14.5 153 8-182 29-226 (360)
240 PF13181 TPR_8: Tetratricopept 97.8 6.7E-05 1.4E-09 39.0 4.1 32 150-181 2-33 (34)
241 KOG0545 Aryl-hydrocarbon recep 97.7 0.0037 8E-08 47.9 13.7 104 90-211 179-293 (329)
242 PF13181 TPR_8: Tetratricopept 97.7 0.00014 3.1E-09 37.7 4.6 31 54-84 2-32 (34)
243 KOG0376 Serine-threonine phosp 97.6 0.00013 2.9E-09 60.8 5.7 96 24-121 9-104 (476)
244 KOG0376 Serine-threonine phosp 97.5 0.00014 3E-09 60.6 5.0 106 58-191 9-115 (476)
245 KOG0551 Hsp90 co-chaperone CNS 97.5 0.00072 1.6E-08 53.9 7.8 99 90-211 82-182 (390)
246 KOG1308 Hsp70-interacting prot 97.5 0.00013 2.8E-09 58.2 3.7 93 26-120 121-213 (377)
247 KOG1308 Hsp70-interacting prot 97.4 0.00012 2.5E-09 58.5 3.3 120 63-210 124-243 (377)
248 PF13281 DUF4071: Domain of un 97.4 0.011 2.3E-07 49.0 14.6 148 17-182 177-338 (374)
249 KOG2300 Uncharacterized conser 97.4 0.025 5.4E-07 47.8 16.6 175 25-219 329-522 (629)
250 PF13174 TPR_6: Tetratricopept 97.4 0.00026 5.6E-09 36.4 3.5 31 55-85 2-32 (33)
251 PF12968 DUF3856: Domain of Un 97.4 0.016 3.6E-07 39.1 12.7 102 96-211 16-129 (144)
252 COG3118 Thioredoxin domain-con 97.4 0.029 6.3E-07 44.4 16.0 153 54-235 135-288 (304)
253 PF13176 TPR_7: Tetratricopept 97.4 0.0005 1.1E-08 36.2 4.5 27 56-82 2-28 (36)
254 KOG2471 TPR repeat-containing 97.4 0.002 4.3E-08 54.1 9.9 143 61-225 214-378 (696)
255 PF13174 TPR_6: Tetratricopept 97.4 0.00039 8.4E-09 35.7 3.9 32 151-182 2-33 (33)
256 PF14561 TPR_20: Tetratricopep 97.4 0.0024 5.3E-08 41.5 8.2 76 38-113 7-82 (90)
257 PF13176 TPR_7: Tetratricopept 97.3 0.00046 1E-08 36.3 3.9 28 151-178 1-28 (36)
258 PF09986 DUF2225: Uncharacteri 97.3 0.0075 1.6E-07 46.3 11.6 64 149-212 118-195 (214)
259 KOG1550 Extracellular protein 97.3 0.041 8.8E-07 48.9 17.8 161 17-211 242-426 (552)
260 PF12968 DUF3856: Domain of Un 97.3 0.027 5.9E-07 38.1 12.2 100 20-119 8-130 (144)
261 KOG2300 Uncharacterized conser 97.2 0.02 4.4E-07 48.3 14.0 165 18-205 366-550 (629)
262 COG0790 FOG: TPR repeat, SEL1 97.2 0.09 1.9E-06 42.6 19.9 171 30-211 52-266 (292)
263 PF08424 NRDE-2: NRDE-2, neces 97.1 0.12 2.7E-06 42.5 18.6 151 40-218 6-190 (321)
264 PF04910 Tcf25: Transcriptiona 97.1 0.14 3.1E-06 42.8 18.1 144 45-212 32-223 (360)
265 PF04781 DUF627: Protein of un 97.0 0.014 3.1E-07 39.0 9.2 92 25-118 2-107 (111)
266 KOG0985 Vesicle coat protein c 97.0 0.15 3.2E-06 47.4 18.0 78 148-228 1219-1322(1666)
267 smart00028 TPR Tetratricopepti 97.0 0.0017 3.6E-08 32.6 3.8 32 150-181 2-33 (34)
268 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0046 9.9E-08 35.6 5.5 38 150-187 2-39 (53)
269 PF09613 HrpB1_HrpK: Bacterial 96.9 0.03 6.5E-07 40.3 10.4 84 20-105 11-94 (160)
270 COG2909 MalT ATP-dependent tra 96.8 0.36 7.8E-06 44.2 19.0 170 23-212 462-648 (894)
271 PF02259 FAT: FAT domain; Int 96.8 0.075 1.6E-06 44.3 14.7 67 15-81 142-212 (352)
272 KOG4507 Uncharacterized conser 96.8 0.0084 1.8E-07 51.7 8.6 102 58-186 611-713 (886)
273 PRK10941 hypothetical protein; 96.8 0.021 4.5E-07 45.4 10.3 65 23-87 185-249 (269)
274 PF10602 RPN7: 26S proteasome 96.8 0.054 1.2E-06 40.3 11.9 99 20-118 37-142 (177)
275 PF14561 TPR_20: Tetratricopep 96.8 0.015 3.2E-07 37.8 7.6 62 7-68 10-73 (90)
276 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.012 2.5E-07 33.9 6.2 34 54-87 2-35 (53)
277 PRK10941 hypothetical protein; 96.7 0.038 8.3E-07 43.9 11.1 61 152-212 184-245 (269)
278 PF08631 SPO22: Meiosis protei 96.7 0.24 5.2E-06 39.9 18.5 189 19-210 35-274 (278)
279 PF09986 DUF2225: Uncharacteri 96.7 0.094 2E-06 40.3 12.7 101 65-182 89-198 (214)
280 KOG1914 mRNA cleavage and poly 96.7 0.38 8.2E-06 41.6 17.8 53 159-211 411-464 (656)
281 smart00028 TPR Tetratricopepti 96.6 0.0049 1.1E-07 30.7 4.1 30 21-50 3-32 (34)
282 PF15015 NYD-SP12_N: Spermatog 96.5 0.15 3.2E-06 42.6 13.0 117 88-212 175-292 (569)
283 KOG2041 WD40 repeat protein [G 96.4 0.23 5E-06 44.2 14.6 161 6-174 680-877 (1189)
284 KOG1550 Extracellular protein 96.4 0.64 1.4E-05 41.5 17.9 146 35-212 228-394 (552)
285 PF10602 RPN7: 26S proteasome 96.4 0.27 5.8E-06 36.6 13.4 107 53-179 36-143 (177)
286 PF13374 TPR_10: Tetratricopep 96.4 0.011 2.4E-07 31.9 4.5 29 150-178 3-31 (42)
287 KOG4507 Uncharacterized conser 96.3 0.0095 2.1E-07 51.4 5.8 97 24-122 612-709 (886)
288 PF12862 Apc5: Anaphase-promot 96.3 0.033 7E-07 36.7 7.1 67 100-183 9-75 (94)
289 KOG3824 Huntingtin interacting 96.3 0.014 3E-07 46.5 5.9 65 23-87 120-184 (472)
290 PF09613 HrpB1_HrpK: Bacterial 96.3 0.27 5.9E-06 35.5 14.2 50 148-197 43-93 (160)
291 COG4976 Predicted methyltransf 96.2 0.0086 1.9E-07 45.5 4.4 59 28-86 4-62 (287)
292 KOG0530 Protein farnesyltransf 96.2 0.43 9.4E-06 37.4 13.7 129 30-186 54-184 (318)
293 COG0790 FOG: TPR repeat, SEL1 96.2 0.53 1.1E-05 38.2 16.4 154 19-179 73-267 (292)
294 KOG0530 Protein farnesyltransf 96.2 0.45 9.7E-06 37.3 14.7 149 10-161 68-233 (318)
295 COG1747 Uncharacterized N-term 96.2 0.74 1.6E-05 39.7 20.6 169 13-186 60-242 (711)
296 KOG3783 Uncharacterized conser 96.1 0.78 1.7E-05 39.7 19.7 221 9-233 257-542 (546)
297 TIGR03504 FimV_Cterm FimV C-te 96.1 0.037 8E-07 30.4 5.4 40 187-231 4-43 (44)
298 PF13374 TPR_10: Tetratricopep 96.0 0.023 4.9E-07 30.6 4.7 29 54-82 3-31 (42)
299 PF10345 Cohesin_load: Cohesin 96.0 1.1 2.4E-05 40.6 17.9 152 35-210 37-207 (608)
300 KOG1839 Uncharacterized protei 96.0 0.27 5.9E-06 46.8 13.7 182 18-219 931-1138(1236)
301 PF02259 FAT: FAT domain; Int 96.0 0.62 1.3E-05 38.8 15.2 140 51-193 144-303 (352)
302 KOG3616 Selective LIM binding 96.0 0.43 9.3E-06 43.0 14.1 115 91-208 767-908 (1636)
303 PRK15180 Vi polysaccharide bio 95.8 0.081 1.7E-06 44.9 8.8 126 29-182 299-424 (831)
304 TIGR02561 HrpB1_HrpK type III 95.8 0.18 4E-06 35.8 9.3 82 21-104 12-93 (153)
305 KOG4814 Uncharacterized conser 95.7 0.15 3.2E-06 44.8 10.3 97 20-118 355-457 (872)
306 KOG0985 Vesicle coat protein c 95.7 1.1 2.3E-05 42.2 15.8 139 51-211 1102-1249(1666)
307 COG4976 Predicted methyltransf 95.7 0.024 5.1E-07 43.2 4.8 60 98-183 4-63 (287)
308 COG4649 Uncharacterized protei 95.6 0.59 1.3E-05 34.3 15.9 54 65-118 70-123 (221)
309 KOG2396 HAT (Half-A-TPR) repea 95.6 0.16 3.5E-06 43.3 9.7 88 71-186 89-177 (568)
310 PF08631 SPO22: Meiosis protei 95.5 1 2.2E-05 36.3 20.8 160 29-212 3-187 (278)
311 KOG3616 Selective LIM binding 95.5 0.5 1.1E-05 42.6 12.6 21 155-175 797-817 (1636)
312 PF04781 DUF627: Protein of un 95.5 0.46 1E-05 31.9 9.7 100 59-178 2-107 (111)
313 PF07079 DUF1347: Protein of u 95.4 1.4 3E-05 37.5 14.4 51 98-175 471-521 (549)
314 TIGR02561 HrpB1_HrpK type III 95.4 0.4 8.8E-06 34.1 9.8 65 54-120 11-75 (153)
315 PF10345 Cohesin_load: Cohesin 95.3 2.1 4.6E-05 38.8 19.8 167 19-207 59-250 (608)
316 KOG2396 HAT (Half-A-TPR) repea 95.3 0.37 7.9E-06 41.3 10.9 87 37-125 89-176 (568)
317 KOG3824 Huntingtin interacting 95.1 0.11 2.3E-06 41.6 7.0 67 94-186 121-187 (472)
318 KOG3807 Predicted membrane pro 95.1 1.2 2.7E-05 36.2 12.8 102 18-121 183-307 (556)
319 PF07720 TPR_3: Tetratricopept 95.0 0.12 2.6E-06 27.0 4.8 32 150-181 2-35 (36)
320 PF07079 DUF1347: Protein of u 95.0 1.9 4.2E-05 36.7 15.4 67 146-212 76-158 (549)
321 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.24 5.3E-06 30.9 6.8 59 153-211 10-72 (80)
322 PF07721 TPR_4: Tetratricopept 95.0 0.044 9.5E-07 26.2 3.0 23 151-173 3-25 (26)
323 KOG3364 Membrane protein invol 94.9 0.56 1.2E-05 32.8 9.0 68 53-121 32-103 (149)
324 KOG2422 Uncharacterized conser 94.9 1.8 3.9E-05 37.9 13.8 145 12-180 277-450 (665)
325 PF12862 Apc5: Anaphase-promot 94.8 0.24 5.3E-06 32.5 7.2 56 29-84 8-72 (94)
326 KOG1839 Uncharacterized protei 94.8 0.25 5.4E-06 47.0 9.4 146 14-177 968-1127(1236)
327 PF07721 TPR_4: Tetratricopept 94.8 0.058 1.3E-06 25.8 3.1 21 56-76 4-24 (26)
328 KOG1914 mRNA cleavage and poly 94.7 2.7 5.8E-05 36.7 19.6 148 9-179 10-167 (656)
329 PRK15180 Vi polysaccharide bio 94.7 0.15 3.2E-06 43.4 7.0 113 6-120 310-422 (831)
330 KOG3364 Membrane protein invol 94.6 0.39 8.4E-06 33.5 7.6 70 18-87 31-105 (149)
331 COG5159 RPN6 26S proteasome re 94.5 2 4.4E-05 34.3 16.4 177 23-219 7-243 (421)
332 KOG4814 Uncharacterized conser 94.4 0.79 1.7E-05 40.6 10.8 98 95-212 360-458 (872)
333 PF11207 DUF2989: Protein of u 94.4 0.75 1.6E-05 34.6 9.4 82 28-110 115-199 (203)
334 COG4649 Uncharacterized protei 94.4 1.5 3.2E-05 32.3 15.2 130 23-177 62-195 (221)
335 PF10516 SHNi-TPR: SHNi-TPR; 94.3 0.11 2.4E-06 27.5 3.7 30 150-179 2-31 (38)
336 KOG1310 WD40 repeat protein [G 94.1 0.29 6.3E-06 42.2 7.6 103 17-121 372-477 (758)
337 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.15 3.3E-06 27.0 3.8 28 21-48 3-30 (38)
338 COG2912 Uncharacterized conser 93.9 0.38 8.2E-06 38.0 7.4 62 26-87 188-249 (269)
339 PF07720 TPR_3: Tetratricopept 93.9 0.29 6.4E-06 25.5 4.8 21 55-75 3-23 (36)
340 TIGR03504 FimV_Cterm FimV C-te 93.9 0.31 6.7E-06 26.8 5.0 26 57-82 3-28 (44)
341 COG5191 Uncharacterized conser 93.6 0.21 4.5E-06 40.1 5.5 81 7-87 95-176 (435)
342 PF00244 14-3-3: 14-3-3 protei 93.5 2.9 6.3E-05 32.8 16.1 59 22-80 4-64 (236)
343 COG2909 MalT ATP-dependent tra 93.4 6.7 0.00014 36.5 16.2 170 18-211 346-526 (894)
344 COG3629 DnrI DNA-binding trans 93.4 0.6 1.3E-05 37.3 7.8 64 53-118 153-216 (280)
345 KOG2581 26S proteasome regulat 93.3 4.3 9.2E-05 34.2 12.5 141 20-182 125-280 (493)
346 PF11207 DUF2989: Protein of u 93.2 0.49 1.1E-05 35.6 6.8 61 12-73 132-198 (203)
347 PF04053 Coatomer_WDAD: Coatom 93.2 4.6 0.0001 35.0 13.5 49 27-76 269-318 (443)
348 PRK13184 pknD serine/threonine 93.2 2.3 5E-05 40.3 12.5 99 60-185 482-588 (932)
349 PF12854 PPR_1: PPR repeat 93.2 0.21 4.5E-06 25.6 3.5 25 90-114 8-32 (34)
350 PF15015 NYD-SP12_N: Spermatog 93.1 0.77 1.7E-05 38.6 8.2 84 27-112 184-285 (569)
351 PF10579 Rapsyn_N: Rapsyn N-te 93.1 1.4 3E-05 27.6 7.7 62 57-118 10-72 (80)
352 PF11817 Foie-gras_1: Foie gra 93.1 1.4 3.1E-05 34.8 9.7 83 34-116 153-245 (247)
353 COG3629 DnrI DNA-binding trans 92.9 0.98 2.1E-05 36.1 8.4 63 20-82 154-216 (280)
354 PF10373 EST1_DNA_bind: Est1 D 92.6 0.72 1.6E-05 37.0 7.6 62 38-101 1-62 (278)
355 KOG1464 COP9 signalosome, subu 92.6 4.4 9.6E-05 32.2 15.8 182 31-212 39-261 (440)
356 PF12854 PPR_1: PPR repeat 92.2 0.49 1.1E-05 24.2 4.1 27 148-174 6-32 (34)
357 COG3947 Response regulator con 92.2 1.3 2.8E-05 35.4 8.1 61 150-210 280-341 (361)
358 COG2912 Uncharacterized conser 91.8 5.5 0.00012 31.6 11.4 70 90-185 182-251 (269)
359 KOG1463 26S proteasome regulat 91.7 6.5 0.00014 32.3 12.5 158 23-180 132-318 (411)
360 KOG1258 mRNA processing protei 91.7 9 0.00019 33.9 17.1 165 20-186 298-478 (577)
361 PF13041 PPR_2: PPR repeat fam 91.6 1.1 2.4E-05 25.1 5.6 32 148-179 2-33 (50)
362 COG3914 Spy Predicted O-linked 91.6 9.3 0.0002 33.8 13.8 132 33-186 45-179 (620)
363 KOG1464 COP9 signalosome, subu 91.4 5.4 0.00012 31.7 10.6 54 67-120 41-96 (440)
364 COG5107 RNA14 Pre-mRNA 3'-end 91.4 8.6 0.00019 33.0 14.4 66 11-79 294-359 (660)
365 COG3914 Spy Predicted O-linked 91.2 8.2 0.00018 34.2 12.4 107 15-121 61-174 (620)
366 KOG2581 26S proteasome regulat 91.2 8.3 0.00018 32.6 13.5 103 19-121 169-279 (493)
367 COG5191 Uncharacterized conser 91.0 1.4 3.1E-05 35.6 7.2 84 142-225 100-185 (435)
368 COG4455 ImpE Protein of avirul 90.6 2.5 5.5E-05 32.4 7.9 70 28-97 10-80 (273)
369 KOG1310 WD40 repeat protein [G 90.3 1.8 4E-05 37.6 7.7 89 67-183 388-479 (758)
370 smart00299 CLH Clathrin heavy 90.1 5.1 0.00011 28.3 13.7 48 29-77 17-64 (140)
371 KOG1538 Uncharacterized conser 89.9 3.2 6.9E-05 37.1 9.0 27 149-175 804-830 (1081)
372 KOG3807 Predicted membrane pro 89.8 10 0.00022 31.2 14.4 132 58-201 189-330 (556)
373 KOG2041 WD40 repeat protein [G 89.7 6.4 0.00014 35.7 10.7 59 54-114 797-877 (1189)
374 COG5187 RPN7 26S proteasome re 89.7 9.5 0.00021 30.7 12.1 118 88-227 114-235 (412)
375 KOG0529 Protein geranylgeranyl 89.4 12 0.00026 31.6 13.4 78 10-87 54-145 (421)
376 PF01535 PPR: PPR repeat; Int 89.3 0.74 1.6E-05 22.5 3.2 26 92-117 3-28 (31)
377 PF13041 PPR_2: PPR repeat fam 89.2 2.2 4.9E-05 23.8 5.5 29 54-82 4-32 (50)
378 PF04053 Coatomer_WDAD: Coatom 88.8 15 0.00033 31.9 14.7 81 22-120 298-378 (443)
379 smart00386 HAT HAT (Half-A-TPR 88.5 1.5 3.3E-05 21.5 4.1 27 34-60 2-28 (33)
380 COG3947 Response regulator con 88.4 3.2 7E-05 33.3 7.3 63 54-118 280-342 (361)
381 KOG1258 mRNA processing protei 88.3 18 0.00039 32.2 17.5 124 53-203 297-421 (577)
382 PF01535 PPR: PPR repeat; Int 88.3 0.94 2E-05 22.0 3.2 26 152-177 3-28 (31)
383 PF10255 Paf67: RNA polymerase 88.0 1.2 2.5E-05 37.8 5.1 59 23-82 126-193 (404)
384 KOG1463 26S proteasome regulat 88.0 14 0.0003 30.5 15.0 26 92-117 131-156 (411)
385 PRK13184 pknD serine/threonine 87.7 4.4 9.6E-05 38.5 9.0 94 24-120 480-583 (932)
386 KOG2422 Uncharacterized conser 87.5 20 0.00043 31.9 18.5 156 32-212 251-449 (665)
387 TIGR00756 PPR pentatricopeptid 87.4 1.7 3.7E-05 21.6 3.9 28 91-118 2-29 (35)
388 COG4941 Predicted RNA polymera 87.2 16 0.00034 30.2 14.5 148 35-211 212-394 (415)
389 PF10373 EST1_DNA_bind: Est1 D 87.1 4.4 9.5E-05 32.4 8.0 60 134-194 2-62 (278)
390 KOG0687 26S proteasome regulat 87.0 16 0.00034 30.1 14.7 103 90-212 105-211 (393)
391 PF14863 Alkyl_sulf_dimr: Alky 86.6 2.5 5.3E-05 30.1 5.4 47 20-66 71-117 (141)
392 PF04190 DUF410: Protein of un 86.4 15 0.00033 29.3 15.7 65 147-211 88-170 (260)
393 PF10255 Paf67: RNA polymerase 85.9 2 4.3E-05 36.4 5.4 109 11-120 65-195 (404)
394 COG5107 RNA14 Pre-mRNA 3'-end 85.8 22 0.00049 30.7 15.1 76 41-118 30-105 (660)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 85.7 9.8 0.00021 26.5 9.4 43 167-209 81-126 (126)
396 TIGR00756 PPR pentatricopeptid 85.2 2.4 5.3E-05 21.0 3.8 26 152-177 3-28 (35)
397 KOG0890 Protein kinase of the 84.9 56 0.0012 34.5 15.7 146 51-211 1668-1833(2382)
398 PF11817 Foie-gras_1: Foie gra 84.3 5.7 0.00012 31.4 7.1 60 21-80 180-245 (247)
399 PF10952 DUF2753: Protein of u 83.6 7.5 0.00016 26.8 6.3 27 22-48 4-30 (140)
400 PF13812 PPR_3: Pentatricopept 83.6 3.7 8E-05 20.4 4.0 27 91-117 3-29 (34)
401 KOG1497 COP9 signalosome, subu 83.5 23 0.00051 29.0 10.6 97 20-117 104-212 (399)
402 KOG0128 RNA-binding protein SA 82.9 9.9 0.00021 35.1 8.5 106 15-120 75-181 (881)
403 PF13812 PPR_3: Pentatricopept 82.2 4.3 9.4E-05 20.1 4.0 27 151-177 3-29 (34)
404 PF09797 NatB_MDM20: N-acetylt 82.1 30 0.00064 29.2 11.4 46 34-79 198-243 (365)
405 smart00777 Mad3_BUB1_I Mad3/BU 81.9 8.9 0.00019 26.7 6.4 59 50-114 66-124 (125)
406 COG4455 ImpE Protein of avirul 81.8 6.6 0.00014 30.2 6.0 60 60-121 8-67 (273)
407 KOG2561 Adaptor protein NUB1, 81.7 14 0.00031 31.5 8.4 97 22-118 166-296 (568)
408 KOG0686 COP9 signalosome, subu 81.4 32 0.00069 29.3 10.3 106 54-177 151-257 (466)
409 KOG0890 Protein kinase of the 80.8 19 0.0004 37.6 10.2 103 16-120 1667-1786(2382)
410 PF11846 DUF3366: Domain of un 80.5 7.3 0.00016 29.4 6.2 42 42-84 134-175 (193)
411 COG5159 RPN6 26S proteasome re 80.2 30 0.00064 28.0 11.2 156 25-180 131-316 (421)
412 PF09670 Cas_Cas02710: CRISPR- 79.3 38 0.00083 28.8 14.9 60 23-82 135-198 (379)
413 KOG0687 26S proteasome regulat 78.4 36 0.00077 28.1 9.4 100 19-118 104-210 (393)
414 KOG4279 Serine/threonine prote 78.3 58 0.0013 30.3 12.4 53 153-219 348-400 (1226)
415 cd02680 MIT_calpain7_2 MIT: do 77.9 6.6 0.00014 24.5 4.3 17 66-82 19-35 (75)
416 KOG0276 Vesicle coat complex C 76.2 60 0.0013 29.3 11.9 26 92-117 669-694 (794)
417 cd02680 MIT_calpain7_2 MIT: do 75.6 8.6 0.00019 24.0 4.3 17 103-119 20-36 (75)
418 PF14863 Alkyl_sulf_dimr: Alky 74.3 17 0.00038 25.9 6.2 49 53-103 70-118 (141)
419 KOG1920 IkappaB kinase complex 74.3 93 0.002 30.6 12.4 60 152-211 955-1028(1265)
420 smart00671 SEL1 Sel1-like repe 74.0 9.6 0.00021 19.1 4.2 27 21-47 3-33 (36)
421 PF11846 DUF3366: Domain of un 73.7 16 0.00034 27.5 6.4 33 148-180 143-175 (193)
422 PHA02537 M terminase endonucle 72.9 43 0.00093 26.2 10.5 93 29-121 93-210 (230)
423 KOG1538 Uncharacterized conser 72.7 77 0.0017 29.0 15.5 83 23-111 636-725 (1081)
424 KOG4521 Nuclear pore complex, 71.8 60 0.0013 31.8 10.3 30 53-82 920-949 (1480)
425 KOG0546 HSP90 co-chaperone CPR 71.3 11 0.00024 31.2 5.1 68 20-87 276-343 (372)
426 PF04348 LppC: LppC putative l 71.1 1.3 2.9E-05 39.3 0.0 102 17-118 22-127 (536)
427 cd02682 MIT_AAA_Arch MIT: doma 71.0 11 0.00023 23.5 4.0 28 150-177 7-34 (75)
428 PF10952 DUF2753: Protein of u 70.9 32 0.0007 23.9 8.3 81 92-183 4-88 (140)
429 KOG0686 COP9 signalosome, subu 70.1 52 0.0011 28.1 8.7 97 21-117 152-257 (466)
430 KOG0276 Vesicle coat complex C 69.0 51 0.0011 29.7 8.8 30 148-177 665-694 (794)
431 PF07219 HemY_N: HemY protein 68.7 29 0.00062 23.4 6.1 27 56-82 62-88 (108)
432 COG3014 Uncharacterized protei 68.7 68 0.0015 26.7 11.7 34 148-181 212-245 (449)
433 KOG0546 HSP90 co-chaperone CPR 67.5 5.5 0.00012 32.9 2.7 69 54-124 276-344 (372)
434 KOG2062 26S proteasome regulat 67.3 1.1E+02 0.0024 28.5 14.7 52 158-210 580-634 (929)
435 cd02682 MIT_AAA_Arch MIT: doma 67.1 28 0.00061 21.7 6.9 24 64-87 17-47 (75)
436 PRK11619 lytic murein transgly 67.0 1.1E+02 0.0023 28.4 15.0 63 148-211 345-436 (644)
437 PF08238 Sel1: Sel1 repeat; I 66.9 16 0.00034 18.7 4.0 15 164-178 23-37 (39)
438 PF04212 MIT: MIT (microtubule 66.8 14 0.0003 22.4 3.9 16 66-81 18-33 (69)
439 KOG2114 Vacuolar assembly/sort 66.7 1.2E+02 0.0025 28.8 10.8 54 28-82 343-397 (933)
440 PF09670 Cas_Cas02710: CRISPR- 65.1 87 0.0019 26.7 13.8 61 58-118 136-198 (379)
441 COG4941 Predicted RNA polymera 64.5 60 0.0013 27.0 7.9 87 33-120 310-396 (415)
442 PF04212 MIT: MIT (microtubule 64.2 23 0.0005 21.4 4.6 26 152-177 8-33 (69)
443 smart00101 14_3_3 14-3-3 homol 64.2 71 0.0015 25.3 18.9 57 22-78 4-64 (244)
444 PF12739 TRAPPC-Trs85: ER-Golg 62.9 1E+02 0.0022 26.7 15.6 96 23-118 212-329 (414)
445 PF12753 Nro1: Nuclear pore co 62.4 14 0.00031 31.1 4.2 13 69-81 334-346 (404)
446 TIGR02996 rpt_mate_G_obs repea 61.7 19 0.00042 19.5 3.2 31 8-38 5-35 (42)
447 cd02681 MIT_calpain7_1 MIT: do 60.1 20 0.00043 22.4 3.7 17 66-82 19-35 (76)
448 smart00299 CLH Clathrin heavy 60.0 57 0.0012 22.8 10.3 51 60-113 14-64 (140)
449 KOG4014 Uncharacterized conser 59.3 75 0.0016 24.0 14.4 180 16-210 31-232 (248)
450 cd02681 MIT_calpain7_1 MIT: do 58.8 30 0.00065 21.6 4.3 26 152-177 9-34 (76)
451 PF02064 MAS20: MAS20 protein 58.2 36 0.00078 23.6 5.0 28 58-85 68-95 (121)
452 KOG4279 Serine/threonine prote 58.1 78 0.0017 29.5 8.2 54 14-68 273-335 (1226)
453 cd02677 MIT_SNX15 MIT: domain 58.1 19 0.00042 22.4 3.4 15 67-81 20-34 (75)
454 PF05053 Menin: Menin; InterP 57.3 1.1E+02 0.0024 27.5 8.7 85 148-232 276-371 (618)
455 cd02683 MIT_1 MIT: domain cont 56.6 24 0.00053 22.1 3.7 13 36-48 4-16 (77)
456 cd02683 MIT_1 MIT: domain cont 55.5 49 0.0011 20.7 7.4 17 102-118 19-35 (77)
457 KOG2114 Vacuolar assembly/sort 54.6 2E+02 0.0043 27.4 12.4 58 61-120 342-399 (933)
458 PF02064 MAS20: MAS20 protein 54.4 40 0.00086 23.3 4.7 30 23-52 67-96 (121)
459 COG4259 Uncharacterized protei 53.9 63 0.0014 21.5 6.1 39 148-186 71-109 (121)
460 KOG0529 Protein geranylgeranyl 53.7 1.4E+02 0.0031 25.6 13.2 92 141-235 101-199 (421)
461 KOG2561 Adaptor protein NUB1, 53.1 1.2E+02 0.0026 26.3 8.0 24 188-211 273-296 (568)
462 cd02679 MIT_spastin MIT: domai 52.7 36 0.00077 21.5 4.0 13 165-177 5-17 (79)
463 KOG1497 COP9 signalosome, subu 52.3 1.4E+02 0.003 24.8 17.1 104 89-211 103-213 (399)
464 PRK15490 Vi polysaccharide bio 51.6 1.2E+02 0.0026 27.5 8.3 45 31-77 54-98 (578)
465 KOG2066 Vacuolar assembly/sort 51.4 1.7E+02 0.0038 27.4 9.3 29 148-176 504-532 (846)
466 PF05053 Menin: Menin; InterP 50.2 2E+02 0.0042 26.0 10.4 86 54-177 258-346 (618)
467 KOG1920 IkappaB kinase complex 49.8 2.8E+02 0.006 27.7 11.4 25 153-177 1003-1027(1265)
468 COG5187 RPN7 26S proteasome re 49.6 1.4E+02 0.0031 24.4 13.5 104 15-118 69-184 (412)
469 PHA02537 M terminase endonucle 49.3 77 0.0017 24.8 6.1 18 102-119 96-113 (230)
470 PF14689 SPOB_a: Sensor_kinase 49.1 54 0.0012 19.4 4.2 24 187-210 28-51 (62)
471 KOG2062 26S proteasome regulat 46.8 2.5E+02 0.0055 26.4 10.7 28 183-210 211-238 (929)
472 COG4259 Uncharacterized protei 46.1 88 0.0019 20.9 5.3 36 52-87 71-106 (121)
473 cd00280 TRFH Telomeric Repeat 46.1 1.3E+02 0.0028 22.8 8.5 69 35-106 85-161 (200)
474 PF09797 NatB_MDM20: N-acetylt 45.8 1.8E+02 0.004 24.5 10.0 46 68-115 198-243 (365)
475 PF08771 Rapamycin_bind: Rapam 45.6 88 0.0019 20.7 6.6 53 26-81 21-76 (100)
476 smart00745 MIT Microtubule Int 45.3 63 0.0014 19.9 4.4 23 155-177 14-36 (77)
477 PF02184 HAT: HAT (Half-A-TPR) 44.0 45 0.00097 16.9 3.7 17 69-85 3-19 (32)
478 cd02678 MIT_VPS4 MIT: domain c 43.6 51 0.0011 20.4 3.7 16 66-81 19-34 (75)
479 KOG3783 Uncharacterized conser 43.2 2.5E+02 0.0053 25.2 12.0 85 36-120 250-334 (546)
480 PF15297 CKAP2_C: Cytoskeleton 43.0 2E+02 0.0044 24.1 8.1 49 70-118 120-169 (353)
481 PF08626 TRAPPC9-Trs120: Trans 42.8 3.7E+02 0.0081 27.2 13.2 132 25-176 248-472 (1185)
482 PRK11619 lytic murein transgly 42.7 2.8E+02 0.0061 25.7 16.7 134 65-208 324-465 (644)
483 TIGR02710 CRISPR-associated pr 40.5 2.3E+02 0.0051 24.2 13.8 54 25-78 136-196 (380)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 40.5 1.2E+02 0.0027 21.0 13.8 33 144-176 94-126 (126)
485 cd02656 MIT MIT: domain contai 40.1 87 0.0019 19.2 4.4 23 155-177 12-34 (75)
486 PF10037 MRP-S27: Mitochondria 39.5 2.6E+02 0.0056 24.4 9.2 59 56-117 106-166 (429)
487 COG5536 BET4 Protein prenyltra 38.6 2.2E+02 0.0047 23.2 7.8 52 35-86 90-143 (328)
488 PF10037 MRP-S27: Mitochondria 38.2 1.9E+02 0.0042 25.2 7.4 61 152-212 106-168 (429)
489 PF12753 Nro1: Nuclear pore co 36.8 72 0.0016 27.2 4.5 31 166-198 335-366 (404)
490 cd00280 TRFH Telomeric Repeat 36.8 1.2E+02 0.0025 23.0 5.1 44 25-69 117-160 (200)
491 KOG4563 Cell cycle-regulated h 36.8 76 0.0016 26.7 4.5 55 20-74 42-104 (400)
492 PF07840 FadR_C: FadR C-termin 36.6 1.3E+02 0.0029 22.1 5.3 18 148-165 90-107 (164)
493 PF12583 TPPII_N: Tripeptidyl 35.9 1.6E+02 0.0034 20.8 5.7 24 64-87 87-110 (139)
494 KOG2758 Translation initiation 35.9 2.6E+02 0.0056 23.3 14.4 170 41-211 117-317 (432)
495 PF14852 Fis1_TPR_N: Fis1 N-te 35.6 68 0.0015 16.5 3.2 27 54-80 2-31 (35)
496 cd02684 MIT_2 MIT: domain cont 35.6 1.1E+02 0.0023 19.1 4.2 22 156-177 13-34 (75)
497 KOG4056 Translocase of outer m 35.6 1.2E+02 0.0027 21.4 4.8 30 58-87 86-115 (143)
498 TIGR00985 3a0801s04tom mitocho 35.5 1.2E+02 0.0026 21.8 4.9 29 58-86 95-124 (148)
499 PF15469 Sec5: Exocyst complex 35.5 1.5E+02 0.0033 22.0 5.8 22 99-120 96-117 (182)
500 KOG4422 Uncharacterized conser 35.5 3.1E+02 0.0066 24.1 15.5 99 12-118 200-302 (625)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=6.8e-27 Score=193.20 Aligned_cols=221 Identities=19% Similarity=0.173 Sum_probs=172.5
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..++|+..|..+-+|-.+|-++..+|+...|+..|++|+.++|....++++||.+|...+.+++|+..|.+++.+.|+++
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 34678888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
.++..+|.+|.++|..+-|+..|++++++.|.- .++ ......++..++.+ ++...|+++.+.++||.+
T Consensus 287 --~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk-aL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 287 --VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK-ALRLCPNHADAMNNLGNI 363 (966)
T ss_pred --hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH-HHHhCCccHHHHHHHHHH
Confidence 677788888888888888888888888887742 222 12245667777776 788888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
|.++|.+++|...|+++++..|+...+. +||.+|..+|+.++|+.+|++++.+ .+....++......+++++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhcchHHHHhhh
Confidence 8888888888888888888888887776 7888888888888888888888887 44444444444444444443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-25 Score=183.00 Aligned_cols=201 Identities=20% Similarity=0.201 Sum_probs=114.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
++++++.+|+..++|+++|.++...+.++.|+.+|.+|+...|+.+.++-++|.+|+.+|..+-|+..|++++++.|+.+
T Consensus 241 y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 241 YEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred HHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 44567777777777777777777777777777776666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
.+++.++..+...|+..+|..+|.+++.+.|. ++++ .....+.|...+++ ++...|+.+.++.+||.+
T Consensus 321 --~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~-al~v~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 321 --DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLK-ALEVFPEFAAAHNNLASI 397 (966)
T ss_pred --HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHH-HHhhChhhhhhhhhHHHH
Confidence 55555555555556666666666665555541 2222 11123334444443 455555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++|++++|+.+|++++.+.|...+++ ++|..|..+|+.+.|++.|.+++..
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 5555555555555555555555554444 4555555555555555555555544
No 3
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.8e-21 Score=162.49 Aligned_cols=205 Identities=13% Similarity=0.074 Sum_probs=184.2
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.++..+|+.++.|-.+|.++-.+++++.|+++|++|+.++|+...++..+|.=+....+++.|..+|+.++..+|.+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY-- 489 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY-- 489 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--
Confidence 478889999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
++|+-+|.+|.++++++.|.-.|++|++++|...+. .-+..+.|...+++ ++.++|.++-..+..|.++.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~-A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK-AIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH-HHhcCCCCchhHHHHHHHHH
Confidence 899999999999999999999999999999954332 12356777888887 88999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCC
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGST 217 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 217 (287)
..+++++|+..+++.-++.|+...++ .+|.+|..+|+.+.|+..|.-|.+..+.+..
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999987665 8999999999999999999988888544433
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=2.3e-20 Score=165.67 Aligned_cols=195 Identities=11% Similarity=0.045 Sum_probs=154.6
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|+...++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|+++++.+|+++ .++..
T Consensus 327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~ 404 (615)
T TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYH 404 (615)
T ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 4677788888888888888888899888888888888888888888888888888888888888888888877 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
+|.++...|++++|+..|+++++++|.. .++ ....++.+...++. ++...|+++.++..+|.++...|++
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~-al~~~P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRR-CKKNFPEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHccCH
Confidence 8888888888888988888888888842 222 23356777777776 6778888888888888888888888
Q ss_pred HHHHHHHHHHHhhCCCchHH-------HHHHHH-HHhccCHHHHHHHHHHHHhcc
Q 023081 166 TSAEVVYRKAQLIDPDANKA-------CNLSHC-LIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~-------~~l~~~-~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++|+..|++++.+.|+.... ++.+.+ +...|++++|...+++++...
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88888888888888764221 122323 344688888888888888763
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=8.6e-20 Score=162.08 Aligned_cols=197 Identities=14% Similarity=0.095 Sum_probs=115.2
Q ss_pred hcCCCCchHHHHhHHhHHh---hCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 13 HKLPPGDSPYVRAKHVQLV---EKDPEAAIVLFWKAINAG---DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.+|.....+..+|..... .+++++|+..|++++..+ |....++..+|.++...|++++|+..|++++..+|+.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3455555555555544332 355666666666666542 4445556666666666666666666666666666655
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
. ..+..+|.++...|++++|+..|+++++.+|.. ..+ ....++.|...+++ ++..+|++..++..+|.
T Consensus 365 ~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k-al~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 T--QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK-SIDLDPDFIFSHIQLGV 441 (615)
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCccCHHHHHHHHH
Confidence 4 455566666666666666666666666665521 111 12244555555555 55666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++...|+++..+ .+|.++..+|++++|+..|++++...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666665554 56666666666666666666666553
No 6
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.86 E-value=1.7e-19 Score=132.93 Aligned_cols=168 Identities=21% Similarity=0.158 Sum_probs=155.8
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++. .+.++.|..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence 357889999999999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
++.+|++++|...|++++..- .-+..+.+|-++|.|..+.|+++.|..+|+++++.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADP------------------------AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCC------------------------CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 999999999999999998641 12335788999999999999999999999999999
Q ss_pred CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+.+... .++..++..|++-.|..+++......
T Consensus 169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 99997775 89999999999999999999988763
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5e-19 Score=157.23 Aligned_cols=197 Identities=16% Similarity=0.118 Sum_probs=88.3
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++..+|+++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++ .
T Consensus 102 ~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~--~ 179 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG--D 179 (656)
T ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH--H
Confidence 44455555555555555555555555555555555555555555555555555555555555555555544444332 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch---------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.+..++ .+...|++++|+..+++++...|. +..+ .......+...++. ++...|+++.++..+|.++.
T Consensus 180 a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~-al~~~p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES-ALARGLDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHH
Confidence 111111 122333333333333333332210 0000 01122233333333 33444444555555555555
Q ss_pred HcCCHHH----HHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTS----AEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~----A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|++++ |+..|++++..+|++...+ .+|.++..+|++++|+..+++++..
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5555443 4455555555555444433 4455555555555555555554444
No 8
>PRK12370 invasion protein regulator; Provisional
Probab=99.85 E-value=2.9e-19 Score=156.21 Aligned_cols=177 Identities=13% Similarity=0.013 Sum_probs=136.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVE---------KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
+-+.+++..+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++++|+..|
T Consensus 282 ~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~ 361 (553)
T PRK12370 282 KLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLF 361 (553)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 345568999999999999999887643 44899999999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 77 KSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 77 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
+++++++|+++ ..+..+|.++...|++++|+..++++++++|. ++..+..++
T Consensus 362 ~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--------------------------~~~~~~~~~ 413 (553)
T PRK12370 362 KQANLLSPISA--DIKYYYGWNLFMAGQLEEALQTINECLKLDPT--------------------------RAAAGITKL 413 (553)
T ss_pred HHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------------------ChhhHHHHH
Confidence 99999999988 78889999999999999999999999999884 333333344
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLID-PDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.+++..|++++|+..+++++... |+++..+ ++|.++..+|++++|...+.++..
T Consensus 414 ~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 414 WITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 44555555666666666555543 4444433 555555556666666666555443
No 9
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=2.7e-18 Score=138.61 Aligned_cols=198 Identities=13% Similarity=0.012 Sum_probs=155.8
Q ss_pred hhhHhhcCC----CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 8 PYHVVHKLP----PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 8 ~~~~l~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.++|...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++
T Consensus 49 ~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 49 LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345665444 2356799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh---h-----cCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA---F-----NGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|++. .++..+|.++...|++++|++.|+++++.+|.... + .......+...+.......+|+ .|. .
T Consensus 129 P~~~--~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~---~~~-~ 202 (296)
T PRK11189 129 PTYN--YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE---QWG-W 202 (296)
T ss_pred CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc---ccH-H
Confidence 9987 78899999999999999999999999999985431 1 1234666777665422222222 232 4
Q ss_pred HHHHHHcCCHHHHHHHHHHHH-------hhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQ-------LIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++...|++.++ ..+..+. ++.|....+| ++|.++..+|++++|+.+|+++++..
T Consensus 203 ~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 203 NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5666677776554 2333333 4445555565 89999999999999999999999884
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.1e-18 Score=150.85 Aligned_cols=203 Identities=13% Similarity=0.038 Sum_probs=177.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+..++...|+++.+++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|++
T Consensus 64 l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 64 LLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------h-cCCChhHHHHHHHHHhhhcCC-CcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------F-NGKPTKTARSHGKKFQVTVKQ-ETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~lg~ 157 (287)
. .++..++.++...|++++|+..+++++...|.... + ....+..|...++. .+...| ........++.
T Consensus 144 ~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~-~l~~~~~~~~~~~~~l~~ 220 (656)
T PRK15174 144 S--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA-LLPFFALERQESAGLAVD 220 (656)
T ss_pred H--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCcchhHHHHHHH
Confidence 8 78889999999999999999999999888774221 1 23456777777776 355554 34445566788
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH----HHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE----ARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~----A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++..+|+++..+ ++|.++...|++++ |...|+++++..
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998776 89999999999986 899999999984
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.83 E-value=5.2e-18 Score=132.49 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=153.1
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
..+..++.+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+. ..+..++
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999877 6888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
.++...|++++|+..+++++...+ .+.....+..+|.++...|++++|...+.+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPL------------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccc------------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999987532 12256678889999999999999999999999
Q ss_pred hhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 177 LIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 177 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|++...+ .+|.++...|++++|..++++++..
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999887665 8999999999999999999999987
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=9e-18 Score=155.60 Aligned_cols=200 Identities=19% Similarity=0.172 Sum_probs=177.2
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.++...|+++..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..+++++...|++.
T Consensus 456 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 533 (899)
T TIGR02917 456 KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL-- 533 (899)
T ss_pred HHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--
Confidence 455678889999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++.++...|++++|+..+++++...|... .+ .......+...++. .+...|.++.+|..+|.++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE-AADAAPDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHH
Confidence 7888899999999999999999999998887321 22 24457777777777 57778889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|++++|+..|+++++..|+++..+ .+|.++...|++++|...|+++++..
T Consensus 613 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999987776 89999999999999999999999874
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.2e-17 Score=152.36 Aligned_cols=200 Identities=12% Similarity=0.028 Sum_probs=160.6
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+.+...|++. ....+|.++...|++++|+..|++++...|.. ..+..+|.++...|++++|+.++++++...|+..
T Consensus 500 ~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~- 576 (987)
T PRK09782 500 LQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN- 576 (987)
T ss_pred HHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-
Confidence 34566667543 35556666677888888888888876665554 5577888888888888888888888888887665
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++......|++++|+..|+++++.+|....+. ....+.+...+++ ++..+|+++.++.++|.++.
T Consensus 577 -~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~-AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 -ALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRA-ALELEPNNSNYQAALGYALW 654 (987)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHH
Confidence 4555556666667999999999999999988643331 3357778888887 79999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++..+
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998886 999999999999999999999998853
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.4e-18 Score=145.52 Aligned_cols=176 Identities=17% Similarity=0.151 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------------
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-------------------------------- 81 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-------------------------------- 81 (287)
+..+|+..|++.-...++...++..+|.+|+.+++|++|..+|+.+.+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 444555555553333344445555555555555555555555555444
Q ss_pred --hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhhh--cCC------ChhHHHHHHHHHhhhcCCCcHH
Q 023081 82 --LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEAF--NGK------PTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 82 --~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~--~~~------~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.+|+.+ +.|..+|++|..+++++.|+++|+++++++| ..-+| .|. .++.|...++. ++..+|.+..
T Consensus 414 i~~~~~sP--esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~-Al~~~~rhYn 490 (638)
T KOG1126|consen 414 IDTDPNSP--ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK-ALGVDPRHYN 490 (638)
T ss_pred HhhCCCCc--HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh-hhcCCchhhH
Confidence 344445 6788889999999999999999999999888 23333 232 35667777776 7888899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+.+|.+|.++++++.|+-.|++|++++|.+... ..+|.++.++|+.++|+.+|++|+...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998666 489999999999999999999999875
No 15
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-18 Score=138.29 Aligned_cols=166 Identities=16% Similarity=0.121 Sum_probs=149.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
++..-.+|..|..+++.++|+.+|+++++++|....+|..+|.-|..+.+...|++.|+++++++|.+- .+|+.+|+.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHH
Confidence 445556788888899999999999999999999999999999999999999999999999999999887 889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
|.-++...=|+-+|+++++.-| +++.+|..+|.||.+.++.++|+++|++++..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kP--------------------------nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKP--------------------------NDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCC--------------------------CchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999998776655 49999999999999999999999999999998
Q ss_pred CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.....+ +.||.+|.++++..+|..+|++.++..
T Consensus 462 ~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7776555 599999999999999999999999854
No 16
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.3e-18 Score=143.53 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=132.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+++ |..|..++..|+..+|+-.|+.++..+|.++++|..||.+....++-..|+..++++++++|++. .+...|+.
T Consensus 285 ~pdP-f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl--eaLmaLAV 361 (579)
T KOG1125|consen 285 HPDP-FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL--EALMALAV 361 (579)
T ss_pred CCCh-HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH--HHHHHHHH
Confidence 3444 57799999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhh-----cC------C-C----hhHH-HHHHHHHhhhcCC--CcHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAF-----NG------K-P----TKTA-RSHGKKFQVTVKQ--ETSRILGNLGWA 158 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~------~-~----~~~a-~~~~~~~~~~~~~--~~~~~~~~lg~~ 158 (287)
.|...|.-.+|..++.+.+...|.-.-. .+ . . .... ..+++ +....| .++++...||.+
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLe--aa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLE--AARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHH--HHHhCCCCCChhHHhhhHHH
Confidence 9999999999999999998866510000 00 0 0 0001 11111 222223 355555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|...|+|++|+.+|+.||...|++...| .||..+..-.+..+|+..|++|+++.
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 5555555555555555555555555555 45555555555555555555555553
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=1.4e-17 Score=157.20 Aligned_cols=204 Identities=17% Similarity=0.159 Sum_probs=168.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-------------------------
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAV------------------------- 61 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~------------------------- 61 (287)
-+.+++...|++..+++.+|.++...|++++|++.|+++++.+|.+..++..++.
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 3446888899999999999999999999999999999999999998776655544
Q ss_pred -----------------HHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh
Q 023081 62 -----------------VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124 (287)
Q Consensus 62 -----------------~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 124 (287)
++...|++++|+..|+++++.+|+++ .++..++.+|...|++++|+..++++++..|....
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 44567999999999999999999988 67889999999999999999999999998873221
Q ss_pred -h-------c-CCChhHHHHHHHHH---------------------------------------hhhcCCCcHHHHHHHH
Q 023081 125 -F-------N-GKPTKTARSHGKKF---------------------------------------QVTVKQETSRILGNLG 156 (287)
Q Consensus 125 -~-------~-~~~~~~a~~~~~~~---------------------------------------~~~~~~~~~~~~~~lg 156 (287)
+ . ......+..+++.. .+...|.++.++..+|
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La 610 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHH
Confidence 0 0 11122222211110 1345788889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.++...|++++|+..|+++++.+|+++.++ +++.++...|++++|+..++++++..
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999998886 89999999999999999999988764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=2.9e-17 Score=138.55 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=165.7
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.+.+++..+|++..+++.+|.++...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|+++++.
T Consensus 57 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 136 (389)
T PRK11788 57 LFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE 136 (389)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC
Confidence 3446778889888899999999999999999999998888754332 256788899999999999999999999988
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------h-------h-cCCChhHHHHHHHHHhhhcCCCc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------A-------F-NGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~-------~-~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
.|.+. ..+..++.++...|++++|++.++++++..|... . + .......+...+++ .+...|++
T Consensus 137 ~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~ 213 (389)
T PRK11788 137 GDFAE--GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK-ALAADPQC 213 (389)
T ss_pred CcchH--HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHhHCcCC
Confidence 77665 6788889999999999999999999888765311 1 1 23456777777777 67778888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++..+|.++...|++++|+..+++++..+|.+. ..+ .++.++...|++++|...++++++..
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999998888763 334 78899999999999999999988874
No 19
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=3.5e-18 Score=138.36 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=170.0
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.+++-.+|...|.+.+.|+.+|..|....+.++-...|.+|..++|.++.+|+..|.+++-++++++|+.-|++++.++
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 45566678889998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-h-------h-cCCChhHHHHHHHHHhhhcCCC------c
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-A-------F-NGKPTKTARSHGKKFQVTVKQE------T 148 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~-~~~~~~~a~~~~~~~~~~~~~~------~ 148 (287)
|++. -.+..++.+.++++.++++...|+.+.+..|... + + ..+.++.|...+.+ ++.+.|. +
T Consensus 425 pe~~--~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~-ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 425 PENA--YAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK-AIELEPREHLIIVN 501 (606)
T ss_pred hhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH-HHhhcccccccccc
Confidence 9887 5677778888888899999999999999888422 1 1 13356777777776 6777776 5
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYM-QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+..+...|.+.. -.+++..|+..+.++++++|....++ .||.+..++|+.++|+++|++++...
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 555555554433 34899999999999999999998887 89999999999999999999998763
No 20
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6e-18 Score=139.21 Aligned_cols=201 Identities=18% Similarity=0.107 Sum_probs=175.0
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
++++..|+.+-.|+..|..|...|.+++|.++|.++..++|....+|...|..|...|+.++|+..|..+-++.|...
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-- 380 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-- 380 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc--
Confidence 578899999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------cCCChhHHHHHHHHHhh---hcCC---CcHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---------NGKPTKTARSHGKKFQV---TVKQ---ETSRILGN 154 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~a~~~~~~~~~---~~~~---~~~~~~~~ 154 (287)
--...+|.-|...++++-|...|.+++.+.|..+.. ....+..|..+++.... ...+ .....+.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 345567778888999999999999999999954332 23356677777776311 1112 23566999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++.+.+.+++|+.+|++++.+.|.+...+ .+|.+|..+|+++.|+.+|.+++.+.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998887 89999999999999999999999884
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=5.5e-17 Score=150.38 Aligned_cols=198 Identities=20% Similarity=0.194 Sum_probs=124.8
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++...|++...++.++..+...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|+++ .
T Consensus 559 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 636 (899)
T TIGR02917 559 AAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA--L 636 (899)
T ss_pred HHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--H
Confidence 44455666666666666666666666666666666666666666666666666666666666666666666666555 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+..++.++...|++++|+..|+++++..|... .+ .......+...++. .....|.++.++..+|.++..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS-LQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCChHHHHHHHHHHHH
Confidence 556666666666666666666666666665311 11 12234455555554 344456666666777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..|++++...|++.....++.++...|++++|...++++++.
T Consensus 716 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777777777776666644446677777777777777777776665
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.81 E-value=1.6e-17 Score=129.75 Aligned_cols=178 Identities=13% Similarity=0.032 Sum_probs=156.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|++..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...+...
T Consensus 54 ~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 54 LDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999998643221
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
....+..+|.++...|++++|...+.+++...|. ++.++..+|.++...|++++
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--------------------------RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------------------ChHHHHHHHHHHHHcCCHHH
Confidence 1256778899999999999999999998877663 67788999999999999999
Q ss_pred HHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|..++++++...|.++..+ .++.++...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999988776664 7889999999999999988776543
No 23
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1e-17 Score=134.81 Aligned_cols=192 Identities=21% Similarity=0.171 Sum_probs=169.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
++++.+|....+|-.+|+-|...++...|+..|++|++.+|.+-.+|++||.+|.-++-+.=|+-+|+++....|+++
T Consensus 355 RALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-- 432 (559)
T KOG1155|consen 355 RALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS-- 432 (559)
T ss_pred HHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+|..+|.+|.+.++.++|+++|.+++..... +..++..+|.+|.+.++.++|.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------------------------e~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------------------------EGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------------------------chHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999987652 5688999999999999999999
Q ss_pred HHHHHHHhhC-------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccccc
Q 023081 170 VVYRKAQLID-------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQ 236 (287)
Q Consensus 170 ~~~~~al~~~-------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 236 (287)
.+|.+.++.. |....+. .|+.-+.+.+++++|-.+...++.. ....+.+..++.++...+
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-------~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-------ETECEEAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHhc
Confidence 9999998833 3333333 7999999999999999999888864 122256666777666554
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=1.6e-17 Score=156.75 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=155.8
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHcCCHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS--------------ALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~la~~~~~~g~~~~A 72 (287)
.+-+++..+|+++.+++.+|.++...|++++|+..|+++++.+|+... ....+|.++...|++++|
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 344577788888888888888888888888888888888888876532 123457778888888888
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hhcCCChhHHHHHHHHHhhh-
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AFNGKPTKTARSHGKKFQVT- 143 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~a~~~~~~~~~~- 143 (287)
+..|+++++.+|++. .++..+|.++...|++++|++.|+++++..|... .+.....+.+..+++.+...
T Consensus 371 ~~~~~~Al~~~P~~~--~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 371 ERLYQQARQVDNTDS--YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH
Confidence 888888888888776 6777788888888999999999999888887422 12222344455444432000
Q ss_pred -------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 -------VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 -------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...-....+..+|.++...|++++|+..|+++++.+|+++..+ .+|.++..+|++++|+..++++++..
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0001133566788889999999999999999999999998775 89999999999999999999999874
No 25
>PRK12370 invasion protein regulator; Provisional
Probab=99.80 E-value=7.6e-18 Score=147.37 Aligned_cols=177 Identities=12% Similarity=0.012 Sum_probs=153.9
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+-++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.+
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ .....++.++...|++++|+..+++++...+ |+++..+..+|.++...|+++
T Consensus 406 ~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-------------------------p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 406 A--AAGITKLWITYYHTGIDDAIRLGDELRSQHL-------------------------QDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred h--hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-------------------------ccCHHHHHHHHHHHHhCCCHH
Confidence 6 3444556567778999999999999876642 346888999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+.+.....|...... .++..+...|+ +|...++..++..
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~ 503 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESE 503 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHh
Confidence 99999999888888776665 78888888884 7888888877654
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=2.3e-16 Score=133.12 Aligned_cols=192 Identities=19% Similarity=0.145 Sum_probs=165.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~~l~ 96 (287)
..+..+|.++...|++++|+..|+++++.+|....++..++.++...|++++|+..+++++...|.+. ....+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 56788999999999999999999999999998889999999999999999999999999999877542 123566789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHHcCCHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET-SRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~lg~~~~~~g~~~ 166 (287)
.++...|++++|+..|+++++..|.. ..+ .....+.|...+++ .+..+|.+ ..++..++.+|...|+++
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER-VEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999988742 222 24467778888887 56666664 567889999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+++++...|+......++.++...|++++|...++++++..
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999988666789999999999999999999999873
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=1.4e-16 Score=145.45 Aligned_cols=196 Identities=7% Similarity=-0.017 Sum_probs=174.3
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|.....++.+|.++...|++++|+.+|++++..+|........++......|++++|+..++++++.+|+ + ..+
T Consensus 536 ~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~--~a~ 612 (987)
T PRK09782 536 SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A--NAY 612 (987)
T ss_pred hccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H--HHH
Confidence 3345556778899999999999999999999999999998888878888788889999999999999999996 5 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
..+|.++.+.|++++|+..|++++.+.|... ++ .....+.+...+++ ++..+|+++.+++++|.++...|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~-AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER-AHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999533 22 23357888888888 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++++|+..|++++++.|+..... ..|.+.....+++.|.+.+.+.....
T Consensus 692 d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 692 DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999997775 89999999999999999999998874
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=2.2e-17 Score=133.35 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=139.0
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
...+.++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++.++|.++...|++++|+..++++++.+|
T Consensus 84 ~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 84 RNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hh----hh--hcCCChhHHHHHHHHH------hhhcCCCcHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HG----EA--FNGKPTKTARSHGKKF------QVTVKQETSRI 151 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~----~~--~~~~~~~~a~~~~~~~------~~~~~~~~~~~ 151 (287)
+++...++. .+....+++++|+..|.+.+...+ .. .. +.+.... . ..+..+ .....|+.+.+
T Consensus 164 ~~~~~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~-~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 164 NDPYRALWL---YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISE-E-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred CCHHHHHHH---HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCH-H-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 876322222 234456889999999987765432 21 11 1233221 1 122221 23455667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKA 185 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 185 (287)
|+.+|.++...|++++|+.+|+++++.+|.+ ...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999999999999999999999744 444
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=1.4e-16 Score=117.56 Aligned_cols=183 Identities=15% Similarity=0.064 Sum_probs=157.3
Q ss_pred CccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 2 SQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 2 ~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.++++.+.++|+.+|++..+|..++.+|...|+.+.|-+.|++|+.++|++.+++++.|..+..+|++++|...|++++.
T Consensus 52 ~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 52 AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 82 LCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 82 ~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
. |... ....+.++|.|..++|+.+.|...|+++++.+|+ .+.....++..++
T Consensus 132 ~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--------------------------~~~~~l~~a~~~~ 184 (250)
T COG3063 132 D-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--------------------------FPPALLELARLHY 184 (250)
T ss_pred C-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--------------------------CChHHHHHHHHHH
Confidence 4 4221 1267888999999999999999999998888764 7888899999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|+|..|..++++.....+-..... ....+-...|+-+.+..+=.+....
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred hcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999888777555554 4446667788877776665555554
No 30
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.76 E-value=3.5e-16 Score=122.69 Aligned_cols=188 Identities=15% Similarity=0.048 Sum_probs=150.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ES 90 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~ 90 (287)
.+..+..++.+|..+...|+++.|+..|++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++. ..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456778899999999999999999999999999998875 67899999999999999999999999999997651 12
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 91 LDNVLIDLYKKC--------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 91 ~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.++.+|.++... |++++|+..|++++..+|...... .+...... ...........+|.+|...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~-----~a~~~~~~----~~~~~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP-----DAKKRMDY----LRNRLAGKELYVARFYLKR 179 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH-----HHHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 577888888876 889999999999999988532110 01100000 0000123345789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 163 GNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|++.+|+..+++++...|+.+ .++ .+|.++..+|++++|..+++.....
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999987753 444 8999999999999999998877654
No 31
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=6.9e-17 Score=133.46 Aligned_cols=178 Identities=18% Similarity=0.222 Sum_probs=154.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
..+++.+|.+.++|..||.+....++-..||..++++++++|++..++..||..|...|.-.+|+.++.+.+...|...+
T Consensus 309 EAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~ 388 (579)
T KOG1125|consen 309 EAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH 388 (579)
T ss_pred HHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999877653211
Q ss_pred -----------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 89 -----------------------------------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 89 -----------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
..+...||.+|...|+|++|+++|+.+|
T Consensus 389 l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL----------- 457 (579)
T KOG1125|consen 389 LVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL----------- 457 (579)
T ss_pred ccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH-----------
Confidence 1234455666666666666666666655
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~ 206 (287)
..+|++...|+.||-.+....+.++|+..|.+|+++.|.+..+ ++||.+++.+|.|++|..+|-
T Consensus 458 ---------------~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 458 ---------------QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred ---------------hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 4555699999999999999999999999999999999999877 499999999999999999999
Q ss_pred HHHhcc
Q 023081 207 DVLLGK 212 (287)
Q Consensus 207 ~~l~~~ 212 (287)
.++...
T Consensus 523 ~AL~mq 528 (579)
T KOG1125|consen 523 EALSMQ 528 (579)
T ss_pred HHHHhh
Confidence 999876
No 32
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.74 E-value=6.4e-16 Score=120.48 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=176.1
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|.+..-++.+|..++..|++..|+..|..|++.+|++-.+++..|.+|...|+-.-|+.-+.+++++.|+.. .+...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~--~ARiQ 111 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM--AARIQ 111 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH--HHHHH
Confidence 4556677899999999999999999999999999999999999999999999999999999999999999987 67778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchhhh-----------------------h-cCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEA-----------------------F-NGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------~-~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.|.++.++|.++.|..-|+.++...|.... + .+.....++.+... .+++.|-++.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~-llEi~~Wda~ 190 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH-LLEIQPWDAS 190 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH-HHhcCcchhH
Confidence 899999999999999999999998872111 1 12245566677666 6889999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
.+...+.||...|++..|+..++.+-++..++... +.++.++...|+.+.++...+++++. +++|.
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK 257 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHK 257 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---Ccchh
Confidence 99999999999999999999999999999998766 58999999999999999999999998 55664
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=3.5e-16 Score=126.94 Aligned_cols=172 Identities=13% Similarity=0.187 Sum_probs=155.4
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-.+...+|.+++.|+..|++.+..+++++|+.-|++++.++|.++-++..++.+.+++++++++...|+.+....|+-+
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch------hh-hh---------cCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH------GE-AF---------NGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~-~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+.+...+.++..++++++|++.|+.++.+.|. +. .+ +......+...+++ +++++|..-.+
T Consensus 463 --Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~K-A~e~Dpkce~A 539 (606)
T KOG0547|consen 463 --EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRK-AIELDPKCEQA 539 (606)
T ss_pred --hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHH-HHccCchHHHH
Confidence 89999999999999999999999999999884 11 11 12245667778877 89999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+..+|.+..++|+.++|+++|+++..+....
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999998876554
No 34
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.73 E-value=2e-16 Score=113.72 Aligned_cols=125 Identities=9% Similarity=-0.040 Sum_probs=103.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 39 IVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 39 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..+|+++++.+|+. +..+|.++...|++++|+..|++++..+|.+. .++..+|.++...|++++|+..|++++++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45788888888864 56788888899999999999999998888877 78888888888899999999998887776
Q ss_pred cchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 119 IYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 119 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
+|. ++.+++++|.++...|++++|+..|++++...|+++..+ +.+.+...
T Consensus 88 ~p~--------------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DAS--------------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCC--------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 654 788889999999999999999999999999999888776 66665543
No 35
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=5.7e-15 Score=114.25 Aligned_cols=201 Identities=13% Similarity=0.140 Sum_probs=164.6
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+..+++.+|...++.+.+|..+..+|..+.||+.-+..+. .|+. .-+...||.-|...|-++.|...|....+.
T Consensus 58 F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 58 FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 3457788888888889999999999999999988765554 4443 456778888888899999999888887764
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------------h-cCCChhHHHHHHHHHhhhcCCCc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------------F-NGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~-~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
..-.. .+...+..+|-...+|++|++.-++..++.+.... . .....+.+...+++ ++..+|+.
T Consensus 137 ~efa~--~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k-Alqa~~~c 213 (389)
T COG2956 137 GEFAE--GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK-ALQADKKC 213 (389)
T ss_pred hhhhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHhhCccc
Confidence 33222 46777888999999999999999998888763211 1 13356778888888 89999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+-..+|.++...|+|.+|++.++.+++.+|+. +.+. .|..||..+|+..+...++.++.+..
T Consensus 214 vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 214 VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999998 4454 89999999999999999999999875
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.6e-16 Score=127.79 Aligned_cols=198 Identities=21% Similarity=0.205 Sum_probs=98.9
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--SKQ 86 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~ 86 (287)
-+++...|.++..+..++.+ ...+++++|+..++++.+..+ ++..+..+..++...|+++++...++++.... |.+
T Consensus 68 ~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 68 EKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp ----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC
Confidence 35777788888888888888 789999999999999887664 45777788888999999999999999987654 344
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--------c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------N-GKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+ .++..+|.++.+.|++++|+..|+++++..|..... . ......+...++.+ ....|.++..|..+|.
T Consensus 146 ~--~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~-~~~~~~~~~~~~~la~ 222 (280)
T PF13429_consen 146 A--RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL-LKAAPDDPDLWDALAA 222 (280)
T ss_dssp H--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH-HHH-HTSCCHCHHHHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-HHHCcCHHHHHHHHHH
Confidence 5 688899999999999999999999999999953221 1 22344455566553 3333778888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++...|++++|+.+|++++..+|+++... .+|.++...|+.++|..++++++..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred Hhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998876 8999999999999999999988764
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=5.6e-15 Score=124.32 Aligned_cols=199 Identities=17% Similarity=0.205 Sum_probs=162.4
Q ss_pred hHhhcCCCCchH-HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch----
Q 023081 10 HVVHKLPPGDSP-YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---- 84 (287)
Q Consensus 10 ~~l~~~p~~~~~-~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---- 84 (287)
++.+..|++..+ ....+.++...|+++.|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+
T Consensus 143 ~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 143 RAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 456667766433 345588999999999999999999999999999999999999999999999977766654321
Q ss_pred --------------------------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh--
Q 023081 85 --------------------------------------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-- 124 (287)
Q Consensus 85 --------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 124 (287)
+++ .+...++..+...|+.++|...++++++..++...
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~--~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~ 300 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV--ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVL 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 111 24556688888999999999999999996664432
Q ss_pred -h---cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHH
Q 023081 125 -F---NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTE 200 (287)
Q Consensus 125 -~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~ 200 (287)
+ .......+....+. .+...|+++..+..+|.++...|++++|..+|+++++..|++.....++.++..+|+.++
T Consensus 301 l~~~l~~~~~~~al~~~e~-~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQ-QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HHhhccCCChHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 2 12345556666666 578899999999999999999999999999999999999999887799999999999999
Q ss_pred HHHHHHHHHhc
Q 023081 201 ARSVLEDVLLG 211 (287)
Q Consensus 201 A~~~~~~~l~~ 211 (287)
|..+|++++..
T Consensus 380 A~~~~~~~l~~ 390 (398)
T PRK10747 380 AAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=4.2e-15 Score=125.70 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=163.8
Q ss_pred hHhhcCCCCc-hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---chh
Q 023081 10 HVVHKLPPGD-SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---CSK 85 (287)
Q Consensus 10 ~~l~~~p~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~ 85 (287)
++.+..|++. ......+.++...|+++.|...+++..+..|+++.++..++.++...|++++|.+.+.+..+. +|.
T Consensus 143 ~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 143 EAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 3556677765 455567999999999999999999999999999999999999999999999888888777643 111
Q ss_pred hh-------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-----
Q 023081 86 QA-------------------------------------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----- 123 (287)
Q Consensus 86 ~~-------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 123 (287)
.. ...+...++..+...|++++|.+.++++++..|+..
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 10 013456678889999999999999999999988655
Q ss_pred hhc------CCChhHHHHHHHHHhhhcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCchHHHHHHHHHH
Q 023081 124 AFN------GKPTKTARSHGKKFQVTVKQETS--RILGNLGWAYMQKGNYTSAEVVYR--KAQLIDPDANKACNLSHCLI 193 (287)
Q Consensus 124 ~~~------~~~~~~a~~~~~~~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~l~~~~~ 193 (287)
.+. ......+...+++ .+...|+++ .....+|+++.+.|++++|.++|+ .+++..|++.....+|.++.
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~-~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEK-QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHH-HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 221 2234556666665 688999999 899999999999999999999999 68888898877779999999
Q ss_pred hccCHHHHHHHHHHHHhc
Q 023081 194 KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~ 211 (287)
.+|+.++|..+|++++..
T Consensus 382 ~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999998765
No 39
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.70 E-value=7.6e-15 Score=114.57 Aligned_cols=123 Identities=16% Similarity=0.215 Sum_probs=90.5
Q ss_pred hhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC
Q 023081 142 VTVKQETS----RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS 216 (287)
Q Consensus 142 ~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 216 (287)
+..+|..+ ..+-.+..|+..-|++.+|+....+++..+|++..++ ..+.+|.....|+.|+.-|+.+.+....+.
T Consensus 296 lk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 296 LKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 45556532 3344567788899999999999999999999998775 899999999999999999999999854444
Q ss_pred CchhHHHHHHHHHHhcccc---ccCCCccccccccchHHHHhhhHhhhhcccccc
Q 023081 217 TETKTINRVKELLQELEPW---QSIPPSLTTKKSSLEDAFLEGLDDLMNQWTPYR 268 (287)
Q Consensus 217 ~~~~~~~~~~~~l~~l~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (287)
.......++..+....+.. ...+...++.. .++.+.+.++...|+|..
T Consensus 376 ~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK----qEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 376 RAREGLERAKRLKKQSGKRDYYKILGVKRNASK----QEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhhhcccccH----HHHHHHHHHHHHhcCCcc
Confidence 4445556666666555543 21222233333 778888899999999863
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=3.5e-16 Score=125.89 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=100.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.|+++..|..+|.+....++++.|+..|++++..++..+..+..++.+ ...+++++|+.+++++.+..++. ..+..
T Consensus 40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~---~~l~~ 115 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP---RYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc---chhhH
Confidence 378888888999999999999999999999999999888888888888 79999999999999998876543 45666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccc--h--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIY--H--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~--~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.+.++...++++++...++++....+ . +..+ .....+.|...+++ ++..+|+++.++..+++++...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~-al~~~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK-ALELDPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH-HHHH-TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHCC
Confidence 77788999999999999999776442 1 1112 23456788888888 89999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+++++...++......|+++..+ .+|.++..+|++++|+.+|++++.. .+.++.........+...+..
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~---~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL---NPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH---STT-HHHHHHHHHHHT-----
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc---ccccccccccccccccccccc
Confidence 99999999988888888887776 8999999999999999999999986 556666656666666666654
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-14 Score=115.85 Aligned_cols=215 Identities=19% Similarity=0.161 Sum_probs=186.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++.........|+.-|...+..+++..|+.+-+++|..+|++..++...|.++...|+.++|+-.|+.+..+.|..- .
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~ 369 (564)
T KOG1174|consen 292 LFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--E 369 (564)
T ss_pred HHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--H
Confidence 44455567788899999999999999999999999999999999999999999999999999999999999999876 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh--cC--------CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF--NG--------KPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~--~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.|..+..+|...|.+.+|...-+.++...|.. .++ .| ...+.|..++++ .+.++|....+-..++.++
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek-~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK-SLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh-hhccCCccHHHHHHHHHHH
Confidence 89999999999999999999999998877632 121 22 246778888888 8999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
...|.+.+++..+++.+...|+......||.++...+.+++|...|..++.. ++.+. ++.+.+..++..
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~~----~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKSK----RTLRGLRLLEKS 517 (564)
T ss_pred HhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---Cccch----HHHHHHHHHHhc
Confidence 9999999999999999999999887789999999999999999999999998 44443 344455555544
No 42
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.1e-14 Score=117.62 Aligned_cols=173 Identities=13% Similarity=0.052 Sum_probs=111.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhchhhh
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEK-DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV--DEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~p~~~ 87 (287)
+|..+|++..+|...|.++...| ++++++..+.+++..+|++..+|...+.++...|+. ++++.++.++++.+|++.
T Consensus 63 aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy 142 (320)
T PLN02789 63 VIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY 142 (320)
T ss_pred HHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH
Confidence 44555555555555555555554 345555555555555555555555555555555542 445555555555555554
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---CC
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK---GN 164 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g~ 164 (287)
.+|...+.++...|+++++++.+.++++ .+|.+..+|+..|.+.... |.
T Consensus 143 --~AW~~R~w~l~~l~~~~eeL~~~~~~I~--------------------------~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 143 --HAWSHRQWVLRTLGGWEDELEYCHQLLE--------------------------EDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------------------HCCCchhHHHHHHHHHHhcccccc
Confidence 4555555555555555555555555544 4555889999999988776 33
Q ss_pred H----HHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 165 Y----TSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~----~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+ ++++.+..+++..+|++..+| .++.++.. +++..+|...+.+++..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 3 478888899999999998888 68888876 45667788888887764
No 43
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=3.8e-15 Score=125.64 Aligned_cols=181 Identities=22% Similarity=0.198 Sum_probs=147.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS- 84 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 84 (287)
..|.-..+...+|..|..+|+++.|+..++.+++. .|........+|.+|...+++.+|+..|++++.+..
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35666677788999999999999999999999987 344445556699999999999999999999998733
Q ss_pred ----hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 85 ----KQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 85 ----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
+++ ...+...|+.+|...|++++|..++++++++... .-....|+-...+.+++.++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~------------------~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK------------------LLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH------------------hhccChHHHHHHHHHHHHHH
Confidence 222 3367889999999999999999999999998542 01122233466788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-----CCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 160 MQKGNYTSAEVVYRKAQLID-----PDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~-----~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++++++|..++++++++- ++++ ... +||.+|..+|++++|..+|++++...
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999998743 3332 222 89999999999999999999999875
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.8e-14 Score=122.83 Aligned_cols=224 Identities=18% Similarity=0.164 Sum_probs=173.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+-+..+|+.+|.++.+|+.+|.+|..+|+.+++...+-.|--++|.+...|..++....++|++++|.-+|.++++.+|.
T Consensus 160 ~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~ 239 (895)
T KOG2076|consen 160 EILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS 239 (895)
T ss_pred HHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-------h------hc--C----------------CC-----
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-------A------FN--G----------------KP----- 129 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~------~~--~----------------~~----- 129 (287)
+. .+....+.+|.+.|++..|...|.+++...|..+ + +. + ..
T Consensus 240 n~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e 317 (895)
T KOG2076|consen 240 NW--ELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE 317 (895)
T ss_pred ch--HHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 75 6788889999999999999999999998876100 0 00 0 00
Q ss_pred --------------h------------------------------------------------------------hHHHH
Q 023081 130 --------------T------------------------------------------------------------KTARS 135 (287)
Q Consensus 130 --------------~------------------------------------------------------------~~a~~ 135 (287)
+ ....+
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e 397 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLE 397 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence 0 00001
Q ss_pred HHHHHhhhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 136 HGKKFQVTVK--Q-ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 136 ~~~~~~~~~~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.+..+....+ | +++..+..++..+...|++.+|+.+|..+....+... .+| .+|.||..+|.+++|+++|++++.
T Consensus 398 ~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 398 ALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 1111111111 2 2577888899999999999999999999988766654 344 899999999999999999999998
Q ss_pred cccCCCCchhHHHHHHHHHHhccc
Q 023081 211 GKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
.. +++....-...+++..++.
T Consensus 478 ~~---p~~~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 478 LA---PDNLDARITLASLYQQLGN 498 (895)
T ss_pred cC---CCchhhhhhHHHHHHhcCC
Confidence 73 4444333444555555443
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.68 E-value=1.5e-15 Score=109.15 Aligned_cols=107 Identities=14% Similarity=-0.009 Sum_probs=100.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++..+|++ ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+++
T Consensus 18 ~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~-- 92 (144)
T PRK15359 18 QLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP-- 92 (144)
T ss_pred HHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--
Confidence 467778764 677899999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+..+|.++...|++++|+..|+++++..|.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999998888764
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.1e-14 Score=132.16 Aligned_cols=200 Identities=10% Similarity=0.075 Sum_probs=157.5
Q ss_pred HhhcCCCCchHH----HH-hHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 11 VVHKLPPGDSPY----VR-AKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 11 ~l~~~p~~~~~~----~~-lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
....+|+....+ +. +| .+...|++++|+..|+++++..|.. ..+...+|.+|...|++++|+..|++++...|
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred hcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 335566554322 22 33 3467789999999999998876442 23445578899999999999999999988877
Q ss_pred hhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-----------------------hhhh-cCCChhHHHHHHH
Q 023081 85 KQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-----------------------GEAF-NGKPTKTARSHGK 138 (287)
Q Consensus 85 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----------------------~~~~-~~~~~~~a~~~~~ 138 (287)
.+. .......++.++...|++++|+..++++....|. +..+ .....+.|...++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 541 1134566677788999999999999999887651 0011 2345677888888
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 139 KFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 139 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
. .+...|+++.++..+|.++...|++++|+..+++++..+|++.... .+|.++..+|++++|...++++++..
T Consensus 384 ~-al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 384 E-LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred H-HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7 6888999999999999999999999999999999999999998875 89999999999999999999999984
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.8e-14 Score=119.02 Aligned_cols=208 Identities=15% Similarity=0.093 Sum_probs=167.6
Q ss_pred HhhcCCCCchHH-HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 11 VVHKLPPGDSPY-VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 11 ~l~~~p~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++.+|-+.+.+ +.+| ++...|+..+-.-+-.+.+...|..+-.|+..|.-|...|++++|..+|.++..++|...
T Consensus 270 lle~dpfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg-- 346 (611)
T KOG1173|consen 270 LLEKDPFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG-- 346 (611)
T ss_pred HHhhCCCCcchHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc--
Confidence 556667665554 4455 555566666555555666777888888999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhhc-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAFN-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..|...|..|.-.|+.+.|+.+|..|-++.|. |..|. -...+.|..++.. ++.+.|.+|.++..+|.+.+
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~-A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ-ALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH-HHhcCCCcchhhhhhhheee
Confidence 78999999999999999999999999998872 33342 4467888888887 89999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC----ch----HHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPD----AN----KACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~----~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
..+.|.+|..+|+.++..-++ .. ...+||.++.+++++++|+..|++++... +.++..+..+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~---~k~~~~~asi 495 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS---PKDASTHASI 495 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC---CCchhHHHHH
Confidence 999999999999999953222 21 12289999999999999999999999984 4444443333
No 48
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=9.1e-15 Score=127.47 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=166.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+--++...|++.-+++..|.+.+.+++|..|+.+|++++..+|.. +.....+|.|++.+|+.+.|+..|.++++++|.
T Consensus 152 ~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~ 231 (1018)
T KOG2002|consen 152 QFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT 231 (1018)
T ss_pred HHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh
Confidence 3445889999999999999999999999999999999999999876 567889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhh---------hcCCChhHHHHHHHHHhhhc---CCCcHH
Q 023081 86 QAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEA---------FNGKPTKTARSHGKKFQVTV---KQETSR 150 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~---~~~~~~ 150 (287)
.+ .+...||.+-.... .+..++..+.++...++..+. |....+..+...... ++.. .+--+.
T Consensus 232 ~v--~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~-ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 232 CV--SALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH-AIKNTENKSIKAE 308 (1018)
T ss_pred hH--HHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 76 66666666655443 477888899999988774322 123344444444433 2222 222466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HH-HHHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KA-CNLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
.++.+|.+|..+|+|++|..+|.+++..++++. -. +.||..+...|+.+.|..+|++++...+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 799999999999999999999999999999983 33 389999999999999999999999986443
No 49
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.67 E-value=1.2e-14 Score=109.73 Aligned_cols=172 Identities=20% Similarity=0.212 Sum_probs=147.8
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+....+|++.+. +.++..+...|+-+.+.....++....|.+...+..+|......|++.+|+..++++....|++.
T Consensus 57 ~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~- 134 (257)
T COG5010 57 GAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW- 134 (257)
T ss_pred HHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-
Confidence 4566778888888 88888899999988888888888888888888888899999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+++.+|.+|.+.|++++|...|.+++++.|. ++.+..++|..+.-.|+++.|
T Consensus 135 -~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--------------------------~p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 135 -EAWNLLGAALDQLGRFDEARRAYRQALELAPN--------------------------EPSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred -hhhhHHHHHHHHccChhHHHHHHHHHHHhccC--------------------------CchhhhhHHHHHHHcCCHHHH
Confidence 88999999999999999999999998877664 788899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
..++..+....+.+..+. +++.+....|++++|..+..+-+
T Consensus 188 ~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999888777676664 89999999999998887665444
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.5e-16 Score=119.06 Aligned_cols=201 Identities=15% Similarity=0.149 Sum_probs=166.0
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
...++..| .++.+..+.++|....++..|+..|.+.+...|.++..+..+|.++..+++.++|+++|+.+++.+|.+.
T Consensus 247 qssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv- 324 (478)
T KOG1129|consen 247 QSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV- 324 (478)
T ss_pred HHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc-
Confidence 34555555 7889999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh--------cCCChhHHHHHHHHH-hhhcCCC-cHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF--------NGKPTKTARSHGKKF-QVTVKQE-TSRILGNLGW 157 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~--------~~~~~~~a~~~~~~~-~~~~~~~-~~~~~~~lg~ 157 (287)
+..-.++.-|+-.++.+-|+.+|++.+++.-.. ..| .+..++-+...+.+. ....+|+ -.++|+++|.
T Consensus 325 -EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~ 403 (478)
T KOG1129|consen 325 -EAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGF 403 (478)
T ss_pred -eeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccce
Confidence 666667778888899999999999999976422 222 233444455555442 2333343 4789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+....|++..|..+|+-++..++++..++ |||.+-.+.|+.++|..++..+.+..
T Consensus 404 vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 404 VAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred eEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999998876 89999999999999999999888764
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=2.8e-14 Score=107.94 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=120.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 105 (287)
+-.|+..|+++......+... +|.. -+...++.++++..++++++.+|++. ..|..+|.+|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCH
Confidence 345677788777544432221 1111 11126778899999999999999888 7899999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCc
Q 023081 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY-MQKGN--YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 106 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~ 182 (287)
++|+..|++++++.|. ++.++..+|.++ ...|+ +++|...++++++.+|++
T Consensus 90 ~~A~~a~~~Al~l~P~--------------------------~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~ 143 (198)
T PRK10370 90 DNALLAYRQALQLRGE--------------------------NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE 143 (198)
T ss_pred HHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999988777664 888999999874 67777 589999999999999999
Q ss_pred hHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 183 NKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 183 ~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
..++ ++|.++..+|++++|+.+|+++++..+.+.+..
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 8776 899999999999999999999998865544443
No 52
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=4.3e-14 Score=127.01 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=160.9
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
.-..|+.+...+..+.+....|+++.|+..|+++++.+|..+.+...++.++...|+.++|+.++++++ .|.+.....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~ 104 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRG 104 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHH
Confidence 345788999999999999999999999999999999999996444488899999999999999999999 554442245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
...+|.+|...|++++|++.|+++++.+|..... . ......+...+++ ....+|..... ..++.++...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~-l~~~dp~~~~~-l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATE-LAERDPTVQNY-MTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH-hcccCcchHHH-HHHHHHHHhc
Confidence 5556889999999999999999999998853211 1 1223344444443 34444543332 3344444445
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccccccCCCc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPWQSIPPS 241 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 241 (287)
++..+|+..+++++..+|++..++ .+..++...|-...|.+...+--... .+.+... -........++.. ..+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f--~~~~~~~-l~~~~~a~~vr~a-~~~~~ 258 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV--SAEHYRQ-LERDAAAEQVRMA-VLPTR 258 (822)
T ss_pred chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc--CHHHHHH-HHHHHHHHHHhhc-ccccc
Confidence 556557777777777777666554 56666666666666665554433221 1111111 1111111111111 01122
Q ss_pred cccccccchHHHHhhhHhhhhccc
Q 023081 242 LTTKKSSLEDAFLEGLDDLMNQWT 265 (287)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~ 265 (287)
...+++...+..+..++.++..|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcc
Confidence 345566677889999999888777
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.65 E-value=9.6e-15 Score=110.48 Aligned_cols=125 Identities=17% Similarity=0.200 Sum_probs=114.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH-HHHcCC--HHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL-YKKCGR--LDEQ 108 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~g~--~~~A 108 (287)
.++.++++..+++++..+|+++..|..+|.+|...|++++|+..|++++++.|+++ .++..+|.+ +...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCCCcHHH
Confidence 56778999999999999999999999999999999999999999999999999988 888999986 467787 5999
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
...++++++.+|. ++.+++.+|..+...|++++|+.+++++++..|.+..
T Consensus 130 ~~~l~~al~~dP~--------------------------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 130 REMIDKALALDAN--------------------------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHhCCC--------------------------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 9999998887764 8999999999999999999999999999999887643
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.65 E-value=1.7e-14 Score=127.25 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=133.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+........|+++++++.+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++...|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ ...+.+|.++.+.|++++|+.+|++++...| +++.++..+|.++...|+.+
T Consensus 154 ~--~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p--------------------------~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 154 A--REILLEAKSWDEIGQSEQADACFERLSRQHP--------------------------EFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred H--HHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--------------------------CcHHHHHHHHHHHHHcCCHH
Confidence 8 7888899999999999999999999887544 37889999999999999999
Q ss_pred HHHHHHHHHHhhCCCchH
Q 023081 167 SAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~ 184 (287)
+|...|++++....+-..
T Consensus 206 ~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 206 RARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHHHHHhhCcchH
Confidence 999999999987655443
No 55
>PLN02789 farnesyltranstransferase
Probab=99.64 E-value=5.7e-14 Score=113.51 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=145.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
..++-.+-.++...+.+++|+..+.++|..+|.+..+|...+.++...| ++++++..+.+++..+|++. .+|+..+.
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHH
Confidence 3444455556677889999999999999999999999999999999998 68999999999999999987 67888888
Q ss_pred HHHHcCCH--HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRL--DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...|+. ++++.+++++++.+| ++..+|...|+++...|++++|++++.++
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dp--------------------------kNy~AW~~R~w~l~~l~~~~eeL~~~~~~ 168 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDA--------------------------KNYHAWSHRQWVLRTLGGWEDELEYCHQL 168 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCc--------------------------ccHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88777763 667777777666654 48999999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHhc---cCH----HHHHHHHHHHHhcccCCCCch
Q 023081 176 QLIDPDANKAC-NLSHCLIKQ---ARY----TEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~---g~~----~~A~~~~~~~l~~~~~~~~~~ 219 (287)
++.+|.+..+| +.+.++..+ |.+ ++++.+..+++...+.+...|
T Consensus 169 I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 169 LEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHH
Confidence 99999999888 778777665 333 478888889999876665555
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=9.1e-14 Score=107.98 Aligned_cols=190 Identities=9% Similarity=0.073 Sum_probs=167.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..+|++|+..|-+.+|.+.++.++...|-. +.+..|+.+|.+..+...|+..+.+.++..|.++ .+...++.++..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V--T~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV--TYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh--hhhhhhHHHHHHH
Confidence 569999999999999999999999988754 8899999999999999999999999999999988 7788889999999
Q ss_pred CCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 103 GRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+++++|.++|+.+++..|... .| .+...+-+..++++ .+.....+++.++++|.|....++++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR-iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR-ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH-HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999999999988422 12 35567778888888 577888899999999999999999999999999
Q ss_pred HHHhhCCCc---hHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 174 KAQLIDPDA---NKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 174 ~al~~~~~~---~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
+++....+. .++| |||.+....|++.-|...|+-++.. +.++.
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ 429 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHG 429 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchH
Confidence 999876533 4556 9999999999999999999999975 45553
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.61 E-value=2e-13 Score=120.62 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=138.7
Q ss_pred hHHhHHhhCCHHHHHHH---HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVL---FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~---~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+-.+....+....+... ........|.++.++..||.+....|.+++|...++.+++..|++. .+...++.++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~ 132 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKR 132 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHH
Confidence 33344444443333333 3333455688899999999999999999999999999999999998 789999999999
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.+++++|+..+++++...|+ ++..++.+|.++...|++++|...|++++..+|+
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~--------------------------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSS--------------------------SAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred hccHHHHHHHHHHHhhcCCC--------------------------CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 99999999999998877665 8999999999999999999999999999999999
Q ss_pred chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.++ .+|.++..+|+.++|...|+++++..
T Consensus 187 ~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 187 FENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 88887 99999999999999999999999985
No 58
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.61 E-value=6e-14 Score=100.23 Aligned_cols=118 Identities=14% Similarity=0.010 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 40 VLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 40 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
..|++++..+|++..+...+|.++...|++++|+..+++++..+|.++ .++..+|.++...|++++|...++++++..
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356777777887777778888888888888888888888888777766 677777888888888888888887766665
Q ss_pred chhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 120 YHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 120 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
|. ++..++.+|.++...|++++|+..|+++++.+|++...
T Consensus 82 p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PD--------------------------DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CC--------------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 43 67777788888888888888888888888887777554
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=1.8e-13 Score=124.38 Aligned_cols=168 Identities=14% Similarity=0.099 Sum_probs=151.5
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|-++....-...+....|+.++|+..+.++....|....++..+|.++...|++++|+..++++++..|+++ .+..
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 45666666777778889999999999999999988899988999999999999999999999999999999887 6788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.++.++...|++++|+..++++++..|. ++. +..+|.++...|++++|+..++
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~--------------------------~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGAPD--------------------------KAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC--------------------------CHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999998877664 777 9999999999999999999999
Q ss_pred HHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 174 KAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 174 ~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
++++..|+++..+ .++.++...|..++|+..++++..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 9999999998875 889999999999999988886554
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.60 E-value=6.3e-14 Score=109.94 Aligned_cols=151 Identities=15% Similarity=0.034 Sum_probs=127.2
Q ss_pred chhhHhhcCCCCc---hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHc--------CCHHHH
Q 023081 7 QPYHVVHKLPPGD---SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS---ALKDMAVVLKQQ--------DRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~--------g~~~~A 72 (287)
.+.+++...|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++... |++++|
T Consensus 55 ~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 55 YFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 4445778888876 57899999999999999999999999999998765 789999999876 889999
Q ss_pred HHHHHHHHHhchhhhHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 73 VEAIKSFRHLCSKQAQES---------------LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
+..+++++..+|++.... ....+|.+|...|++.+|+..+++++...|.
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------- 198 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD---------------- 198 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC----------------
Confidence 999999999999763111 1235788899999999999999999988763
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.|..+.+++.+|.++...|++++|..+++......|
T Consensus 199 -------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 199 -------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 244578999999999999999999999988766554
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.7e-12 Score=109.90 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=124.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..-+..+..|+....+...|.+....|+++.|..++.++.+..|+.. .+....+.++...|+++.|...++++++..|+
T Consensus 106 ~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~ 185 (409)
T TIGR00540 106 LIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR 185 (409)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 33445566676677788889999999999999999999999888874 46666799999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhh--------hcCCC----hhHHHHHHHHHhhhcCC----Cc
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEA--------FNGKP----TKTARSHGKKFQVTVKQ----ET 148 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~--------~~~~~----~~~a~~~~~~~~~~~~~----~~ 148 (287)
++ .+...++.++...|++++|.+.+.+..+.... ... +.+.. .......+.. .....| ++
T Consensus 186 ~~--~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~-~~~~~p~~~~~~ 262 (409)
T TIGR00540 186 HK--EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN-WWKNQPRHRRHN 262 (409)
T ss_pred CH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHCCHHHhCC
Confidence 98 78899999999999999999999999876321 110 10000 0000112222 122223 35
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.++..+|..+...|++++|.+.++++++..|++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 6666666666666676666666666666654444
No 62
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=1.4e-13 Score=98.34 Aligned_cols=127 Identities=20% Similarity=0.160 Sum_probs=108.6
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
+.+++++..+|++. .....++..+...|++++|...+++++..+|. ++.++.
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~ 55 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY--------------------------NSRYWL 55 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--------------------------cHHHHH
Confidence 46889999999887 67888999999999999999999988777654 789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHH
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKEL 228 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (287)
.+|.++...|++++|..++++++..+|+++..+ .+|.++...|++++|+..|+++++..+.+........++...
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 131 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM 131 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 999999999999999999999999999997776 899999999999999999999999865444433343344433
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2.7e-13 Score=109.84 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=165.0
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++..+..++.+..+.|.+.+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-++..+--+++ .
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--E 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--H
Confidence 55666778888999999999999999999999999999988899999999999999999999999999988777777 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc----------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN----------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
+...++.+|....+...|++++.++..+.|...... |...+...-++. .-...|-+.++.-.+|..|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~yd--syryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYD--SYRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhh--cccccCcchHHHHHHHHHHH
Confidence 889999999999999999999999999888544321 222222233333 34556778888888999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...-+++|+.+|+++--+.|+...+. .++.|+.+.|+|+.|...|+..-...
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999999999988888776553 78999999999999999998776553
No 64
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.58 E-value=2e-13 Score=96.51 Aligned_cols=127 Identities=15% Similarity=0.032 Sum_probs=102.2
Q ss_pred HHhc-hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 80 RHLC-SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 80 ~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
..+. ++.. +..+.+|..+...|++++|...|+....++|. +...|++||.+
T Consensus 27 ~~~~~~~~l--~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--------------------------~~~y~~gLG~~ 78 (157)
T PRK15363 27 LDDDVTQPL--NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--------------------------SFDYWFRLGEC 78 (157)
T ss_pred HCCChHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHH
Confidence 3444 4444 56777888889999999999999987777664 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
+..+|+|.+|+..|..++.++|+++... ++|.|+...|+.+.|...|+.++...-..+.+.....++...|..+..
T Consensus 79 ~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 79 CQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998875 999999999999999999999998754344555566667777766543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.58 E-value=4e-13 Score=113.57 Aligned_cols=201 Identities=20% Similarity=0.216 Sum_probs=152.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK- 85 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 85 (287)
.|.-......+|.+|...+++.+|+..|++|+.+. |..+.++.+||.+|...|++++|..++++++++...
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~ 316 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL 316 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence 34334445569999999999999999999999643 445778999999999999999999999999887432
Q ss_pred ----hh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh-cCCCcHHHHHHHHHHH
Q 023081 86 ----QA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT-VKQETSRILGNLGWAY 159 (287)
Q Consensus 86 ----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~lg~~~ 159 (287)
.+ .......++.++..++++++|..++++++++... +.. .++..+....++|.+|
T Consensus 317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~-------------------~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD-------------------APGEDNVNLAKIYANLAELY 377 (508)
T ss_pred hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh-------------------hccccchHHHHHHHHHHHHH
Confidence 11 1245778899999999999999999999988531 111 1223577899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-----c---h-HHHHHHHHHHhccCHHHHHHHHHHHHhcc-cCCCCc---hhHHHHHH
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPD-----A---N-KACNLSHCLIKQARYTEARSVLEDVLLGK-LSGSTE---TKTINRVK 226 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~-----~---~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~---~~~~~~~~ 226 (287)
..+|++++|.+.|++++.+... + . ..|+||..+.+.+++.+|...|.+++.+. ..++++ ...+....
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 9999999999999999986421 1 2 23589999999999999999999988765 223333 33444444
Q ss_pred HHHHhccc
Q 023081 227 ELLQELEP 234 (287)
Q Consensus 227 ~~l~~l~~ 234 (287)
.....++.
T Consensus 458 ~~Y~~~g~ 465 (508)
T KOG1840|consen 458 ALYRAQGN 465 (508)
T ss_pred HHHHHccc
Confidence 44455554
No 66
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=9.9e-13 Score=115.06 Aligned_cols=200 Identities=15% Similarity=0.069 Sum_probs=124.0
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD---RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
-..+|++|.+...++.-++-.|+|..+..+...++.... -.++.++.+|.+|..+|++++|..+|.+++..+|++..
T Consensus 263 y~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 263 YKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 345666666666666666666666666666666665442 22445666666666666666666666666666665521
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhhc----------------------------------
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAFN---------------------------------- 126 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~---------------------------------- 126 (287)
-...-+|++|+..|+++.|+.+|+++++..|+ |..|.
T Consensus 343 -l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la 421 (1018)
T KOG2002|consen 343 -LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA 421 (1018)
T ss_pred -ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 23445666666666666666666666666552 11111
Q ss_pred ----CCChhHHHHHHHHH----hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCch------HHHH
Q 023081 127 ----GKPTKTARSHGKKF----QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI-----DPDAN------KACN 187 (287)
Q Consensus 127 ----~~~~~~a~~~~~~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~~~~~------~~~~ 187 (287)
.........++... .....+-.+++++++|..++..|++.+|...|+.++.. +++.. .-+|
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 11111112222221 11122345778888888888888999999888888875 22221 1248
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 188 LSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 188 l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++..+++++.|.+.|..+++.+
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 8888888888888888888888764
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-13 Score=109.21 Aligned_cols=225 Identities=14% Similarity=0.104 Sum_probs=177.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----------
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ---------- 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------- 88 (287)
..+-+.-+.++...|++++|...--..+++++.+..+++-.|.+++..++.+.|+.+|++++.++|++.-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3455667788888999999999999999999999999999999999999999999999999999997621
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
...+..-|+-.++.|+|.+|.++|..+|.++|... ..++..+.+.+.+..+.|+..+|
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~----------------------~~naklY~nra~v~~rLgrl~ea 306 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK----------------------KTNAKLYGNRALVNIRLGRLREA 306 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc----------------------chhHHHHHHhHhhhcccCCchhh
Confidence 12355668888999999999999999999998411 11577899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc---ccCCCcccc
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW---QSIPPSLTT 244 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~~~ 244 (287)
+.....++.+++....++ ..|.|+..++++++|++.|+++++.... ....+...++...|+.-... ...+....+
T Consensus 307 isdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 307 ISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 999999999999998776 7899999999999999999999998532 44556667777666644332 111111111
Q ss_pred ccccchHHHHhhhHhhhhcccccccc
Q 023081 245 KKSSLEDAFLEGLDDLMNQWTPYRSR 270 (287)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 270 (287)
. .+++.+....+...|+|....
T Consensus 386 s----~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 386 S----DDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred c----cchhhhHHHHHHHHhCCCcCc
Confidence 1 144556666666677776543
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.9e-12 Score=98.23 Aligned_cols=192 Identities=16% Similarity=0.158 Sum_probs=158.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---hHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---AQESLDNVL 95 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~l 95 (287)
.+.-|..|.-++..++.++|++.|...++.+|...+++..||.+|...|+.+.|+.+-+..+.. |+- ....+...+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL 113 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQL 113 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444677888999999999999999999999999999999999999999999999998887764 422 222467789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccc--------hhhhh-cCCChhHHHHHHHHHhhhcCCC-----cHHHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIY--------HGEAF-NGKPTKTARSHGKKFQVTVKQE-----TSRILGNLGWAYMQ 161 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~-~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~lg~~~~~ 161 (287)
|.-|...|-++.|...|....+... ....| ..+.++.|++..+++ ....+. -+..++.++..+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L-~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL-VKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHcCCccchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999887433 22333 244567777776653 333333 25678899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+++.|...++++++.+|....+. .+|.++...|++..|++.++.+++.+
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 9999999999999999999998774 89999999999999999999999873
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.54 E-value=5e-12 Score=108.26 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=70.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
..+..+|+|+.+.++++..|..+++.+.|.+..+++++.+ .+++.+|..+|.++...+++.+|+.+...+++-.|+|
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 4677899999999999999999999999999999999994 5668999999999999999999999999998887763
No 70
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1e-13 Score=106.66 Aligned_cols=127 Identities=25% Similarity=0.282 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
-+..-|.-+...++|.+|+..|.+++.++|.++ .++...+.+|.+.|.++.|++.++.++.++|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~------------- 147 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH------------- 147 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-------------
Confidence 344566777778888999999999999988887 67888888888889999999888888777764
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHH---HHHHHHHHHH
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYT---EARSVLEDVL 209 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~---~A~~~~~~~l 209 (287)
+..+|.+||.+|..+|++++|++.|+++|.++|++..++ +|..+-.+++... .+...++.+.
T Consensus 148 -------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~ 213 (304)
T KOG0553|consen 148 -------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAG 213 (304)
T ss_pred -------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhh
Confidence 678888899999999999999999999999999888776 7777766666555 3444444333
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=2.2e-12 Score=112.16 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=148.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
....+..|...+..|++++|...+.++|+.+|.++.+|+.||.+|.+.|+.+++...+-.+..++|++. ..|..++..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladl 216 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHH
Confidence 456778888899999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..++|++..|.-+|.++++..|. +....+..+.+|.++|+...|...|.+++..
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~--------------------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPS--------------------------NWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCc--------------------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 99999999999999999888774 6777888999999999999999999999999
Q ss_pred CCCch------HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 179 DPDAN------KACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 179 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|... .++..+..+...++-+.|++.++.++..
T Consensus 271 ~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 271 DPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 98321 2235677788888889999999999984
No 72
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.7e-12 Score=105.84 Aligned_cols=193 Identities=19% Similarity=0.187 Sum_probs=162.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-----hHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~ 92 (287)
.....-.+|.......++..|++.|..++.++ .+...+.+.+.+|...|.+.+.+....++++..-.. ......
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999 888889999999999999999999999988765432 112234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch----------------------------------hhh-hcCCChhHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH----------------------------------GEA-FNGKPTKTARSHG 137 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------------------------------~~~-~~~~~~~~a~~~~ 137 (287)
..+|..|...++++.|+.+|.+++..... |.. |....+..|..++
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 44777899999999999999998874221 111 1233467777777
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.. ++..+|+++..+.+.|.||...|.+..|+...+.+++++|++...| .-|.++..+.+|+.|...|+++++..
T Consensus 382 te-AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 382 TE-AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HH-HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77 8999999999999999999999999999999999999999998887 78999999999999999999999874
No 73
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1e-11 Score=104.62 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=136.4
Q ss_pred hhhHhhcCCCC---chHHHHh-HHhHHhhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 8 PYHVVHKLPPG---DSPYVRA-KHVQLVEKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 8 ~~~~l~~~p~~---~~~~~~l-g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..+.+...|+. +..++.+ +.+....|+++.|..+|.++.+..|+... .....+.++...|++++|+..++++.+.
T Consensus 103 A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~ 182 (398)
T PRK10747 103 VEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV 182 (398)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 34555555553 4555554 66669999999999999999999998743 3345589999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh---------hhhc--------CCChhHHHHHHHHHhhhcC
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---------EAFN--------GKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~--------~~~~~~a~~~~~~~~~~~~ 145 (287)
.|+++ .+...++.+|...|++++|++.+.+..+..... .++. ....+......+. .....
T Consensus 183 ~P~~~--~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~-lp~~~ 259 (398)
T PRK10747 183 APRHP--EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN-QSRKT 259 (398)
T ss_pred CCCCH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh-CCHHH
Confidence 99998 789999999999999999998888887654321 0110 0000111111111 01112
Q ss_pred CCcHHHHHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH
Q 023081 146 QETSRILGNLGWAYMQK-------------------------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~-------------------------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
|+++.+...++..+... ++++++++..++.++..|+++... .+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 33444444444444444 445555555555555666666654 7888888
Q ss_pred hccCHHHHHHHHHHHHhc
Q 023081 194 KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~ 211 (287)
..+++++|..+|+++++.
T Consensus 340 ~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 888888888888888876
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.52 E-value=1.7e-12 Score=108.21 Aligned_cols=193 Identities=8% Similarity=-0.014 Sum_probs=147.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
+|+.+.++..+|..+...|+++.+...+.++....|.. .+.....+.++...|++++|...++++++.+|++. ..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a 79 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LA 79 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HH
Confidence 68999999999999999999999988888888776644 45677778899999999999999999999999876 33
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----hccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKL----RMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+.. +..+...|++..+.....+++ ...|. +..+ ....+..+...+++ .+..+|+++.++..+|.+
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~-al~~~p~~~~~~~~la~i 157 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARR-ALELNPDDAWAVHAVAHV 157 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCcHHHHHHHHH
Confidence 332 334444444433333333333 23331 1112 23356778887777 788899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchH-----HHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANK-----ACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+...|++++|+.++++++...|..+. .+.++.++..+|++++|+..|++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 99999999999999999998774422 237999999999999999999999765
No 75
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=5.1e-12 Score=106.56 Aligned_cols=214 Identities=14% Similarity=0.066 Sum_probs=165.3
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
|.-+..++..+|++.+.|+..-++.....+++.|..+|.++....|.- .+|+.-+.....+++.++|+..++++++..|
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe-Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE-RVWMKSANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc-hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 334445566666666666666666666667777777776666655544 6777778888888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
+.. .+|..+|+++.++++.+.|.+.|...++..|....++ ....-.|...+.+ +...+|++...|...
T Consensus 683 ~f~--Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr-arlkNPk~~~lwle~ 759 (913)
T KOG0495|consen 683 DFH--KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR-ARLKNPKNALLWLES 759 (913)
T ss_pred chH--HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH-HHhcCCCcchhHHHH
Confidence 877 8999999999999999999999999999988655542 1134556666766 778899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCch------------------------------HH-HHHHHHHHhccCHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDAN------------------------------KA-CNLSHCLIKQARYTEARSV 204 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------------------~~-~~l~~~~~~~g~~~~A~~~ 204 (287)
..+-.+.|..+.|.....+|++..|.+. .. ..+|..+....+++.|..+
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~W 839 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREW 839 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998666543 11 2567778888899999999
Q ss_pred HHHHHhcccCCCCchhHH
Q 023081 205 LEDVLLGKLSGSTETKTI 222 (287)
Q Consensus 205 ~~~~l~~~~~~~~~~~~~ 222 (287)
|.++++..+...+.|-.+
T Consensus 840 f~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 840 FERAVKKDPDNGDAWAWF 857 (913)
T ss_pred HHHHHccCCccchHHHHH
Confidence 999999865555555443
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=7.7e-12 Score=105.52 Aligned_cols=205 Identities=11% Similarity=0.073 Sum_probs=160.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
..++..|+....|+.+|+++...++.+.|...|...++.-|..+..|..++.+--..|...+|...++++.-.+|++.
T Consensus 676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~-- 753 (913)
T KOG0495|consen 676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA-- 753 (913)
T ss_pred HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc--
Confidence 356677888888888888888888888888888888888888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.+|.....+-.+.|+.+.|.....++++-.|..-.++ ++......+ ++....+++.++...|.+++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D-----ALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID-----ALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH-----HHHhccCCchhHHHHHHHHH
Confidence 6777777777788888888888888888777422211 111122222 34444668999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKT 221 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 221 (287)
...++++|.++|.+++..+|++.++| .+-..+...|.-++-.+.+.++....+.....|.+
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~a 890 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQA 890 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHH
Confidence 99999999999999999999999998 77788889999999999999999875544455544
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.51 E-value=9.7e-12 Score=101.75 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
.|....+++..|..++..|++++|+..++..+...|+|+ .++...++++...++..+|.+.+++++..+|.
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~------- 372 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDPN------- 372 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------
Confidence 367778888888888888888888888888888888887 57777888888888888888888888888774
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
.+.++.++|.++.+.|++.+|+..++..+..+|+++..| .|+.+|..+|+..+|...+.+
T Consensus 373 -------------------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 373 -------------------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -------------------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 577788888888888888888888888888888888887 788888888888888877777
Q ss_pred HHhc
Q 023081 208 VLLG 211 (287)
Q Consensus 208 ~l~~ 211 (287)
....
T Consensus 434 ~~~~ 437 (484)
T COG4783 434 GYAL 437 (484)
T ss_pred HHHh
Confidence 6654
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=2.2e-12 Score=107.60 Aligned_cols=160 Identities=13% Similarity=0.037 Sum_probs=110.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhchhhhHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFR----HLCSKQAQESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~~ 93 (287)
..+..+..|.++...|++++|+..+++++..+|++..++.. +..+...|+...+.....+++ ...|... ....
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 118 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLG 118 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHH
Confidence 34456777888899999999999999999999988766664 445544444333333333333 2334333 3555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc----HHHHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET----SRILGNLGWAYM 160 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~lg~~~~ 160 (287)
.++.++..+|++++|...+++++++.|.. .++ .....+.+..++++ .+...|.+ ...+..+|.++.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~-~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMES-WRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHh-hhhccCCCcchhHHHHHHHHHHHH
Confidence 67778888888888888888888887742 122 23356677777766 45554432 345678999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 023081 161 QKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~ 181 (287)
..|++++|+..|++++...|.
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HCCCHHHHHHHHHHHhccccC
Confidence 999999999999999877664
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=7e-13 Score=102.15 Aligned_cols=99 Identities=17% Similarity=0.123 Sum_probs=93.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+-.-|.-....++|.+|+..|.+||+++|+++..|.+.|.+|.++|.++.|++-++.++.++|... ..|..+|.+|.
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~A~~ 160 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHHHHH
Confidence 3455677888999999999999999999999999999999999999999999999999999999887 89999999999
Q ss_pred HcCCHHHHHHHHHHHHhccch
Q 023081 101 KCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|++++|++.|+++++++|+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCC
Confidence 999999999999999988886
No 80
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2e-11 Score=91.84 Aligned_cols=155 Identities=18% Similarity=0.171 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---------
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------- 125 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------- 125 (287)
.+-....+....|+.+-|..++++.....|+.. .+...-|..+...|++++|+++|+..++-+|...+.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 333444444555555555555555555555444 444444555555555555555555555555532221
Q ss_pred -cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc---CHHH
Q 023081 126 -NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA---RYTE 200 (287)
Q Consensus 126 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g---~~~~ 200 (287)
.|+.. .++..+.. -+...+.+.++|..++.+|...|+|++|.-++++.+-+.|.++..+ .+|.++.-+| +..-
T Consensus 132 a~GK~l-~aIk~ln~-YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNL-EAIKELNE-YLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcH-HHHHHHHH-HHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 12222 22222222 2444566999999999999999999999999999999999999887 8998887666 5678
Q ss_pred HHHHHHHHHhccc
Q 023081 201 ARSVLEDVLLGKL 213 (287)
Q Consensus 201 A~~~~~~~l~~~~ 213 (287)
|.++|.++++..+
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 9999999999854
No 81
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.49 E-value=9.2e-12 Score=94.24 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
..+...+-.....+|++..+ .+++..+...|+-+.+..+..++...+|.+. .+...+|...+..|++..|+..++++
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33555555777788999888 9999999999999999999999988888876 56666899999999999999999998
Q ss_pred HhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 116 LRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 116 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
....|. +..+|+.+|.+|.+.|++++|...|.+++++.|..+.+. |+|..+.-
T Consensus 127 ~~l~p~--------------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 127 ARLAPT--------------------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred hccCCC--------------------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 877664 899999999999999999999999999999999998886 99999999
Q ss_pred ccCHHHHHHHHHHHHhc
Q 023081 195 QARYTEARSVLEDVLLG 211 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~ 211 (287)
.|+++.|..++..+...
T Consensus 181 ~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 181 RGDLEDAETLLLPAYLS 197 (257)
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 99999999999999876
No 82
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=6.7e-13 Score=93.88 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=99.5
Q ss_pred hcC-CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 13 HKL-PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 13 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
... ++.-+..|.+|..+...|++++|...|+-+...+|.+...|++||.++...|++.+|+..|.+++.++|+++ ..
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~ 105 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QA 105 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hH
Confidence 344 677788999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
....|.++...|+.+.|.+.|+.++...
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=3.2e-11 Score=98.80 Aligned_cols=174 Identities=18% Similarity=0.110 Sum_probs=151.3
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|....+.|..+..++..|++++|...++..+...|+++..+...+.++...++..+|.+.+++++.++|+.. .+.
T Consensus 300 ~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~ 377 (484)
T COG4783 300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQ 377 (484)
T ss_pred HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHH
Confidence 344788899999999999999999999999999999999999999999999999999999999999999999887 689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|++|.+.|++.+|+..++..+..+|. ++..|..||..|..+|+-.+|...+
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~--------------------------dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPE--------------------------DPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC--------------------------CchHHHHHHHHHHHhCchHHHHHHH
Confidence 99999999999999999999987766554 8999999999999999999887654
Q ss_pred HHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 173 ~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+..+...|++++|+..+..+.+....+..+| .++...+..+.
T Consensus 432 ----------------AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~---aR~dari~~~~ 473 (484)
T COG4783 432 ----------------AEGYALAGRLEQAIIFLMRASQQVKLGFPDW---ARADARIDQLR 473 (484)
T ss_pred ----------------HHHHHhCCCHHHHHHHHHHHHHhccCCcHHH---HHHHHHHHHHH
Confidence 4566778999999999999998865555555 44554444444
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=7.4e-12 Score=101.61 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=162.4
Q ss_pred chhh-HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYH-VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~-~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
++|+ ++..+.....+++++|..+...|+.++|+++|-+...+--++++++..++.+|..+.+..+|++++.++..+-|+
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 4454 677777888999999999999999999999999988777788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh---hhh------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---EAF------NGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++ .+...++.+|-+.|+-..|..++-......|-. ..| ..+.++.++.++++ +.-+.|+.......++
T Consensus 591 dp--~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~kwqlmia 667 (840)
T KOG2003|consen 591 DP--AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSKWQLMIA 667 (840)
T ss_pred CH--HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHHHHHHHH
Confidence 98 889999999999999999999988888888732 112 23356778888888 6778898888889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
.|+.+.|+|.+|...|+..-...|.+.... .|.++...+|-
T Consensus 668 sc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 668 SCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999987665 66677666663
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=1.2e-11 Score=111.39 Aligned_cols=168 Identities=11% Similarity=-0.009 Sum_probs=138.1
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+.+.+.++++.+|+++.+...+..++...|+.++|+.++++++...|........+|.++...|++++|++.|+++++.+
T Consensus 53 Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d 132 (822)
T PRK14574 53 VLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD 132 (822)
T ss_pred HHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 44556678999999865555888888889999999999999994444455556666889999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-----c--C-CChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-----N--G-KPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~--~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|+++ .++..++.+|...++.++|++.++++...+|....+ . + .....+...+++ .+..+|++..++..+
T Consensus 133 P~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek-ll~~~P~n~e~~~~~ 209 (822)
T PRK14574 133 PTNP--DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE-AVRLAPTSEEVLKNH 209 (822)
T ss_pred CCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH-HHHhCCCCHHHHHHH
Confidence 9987 677788999999999999999999999999853322 1 1 123236666666 788999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~ 174 (287)
..++...|-...|++..++
T Consensus 210 ~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHcCCcHHHHHHHHh
Confidence 9999999999999977665
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.45 E-value=3.1e-11 Score=92.05 Aligned_cols=176 Identities=19% Similarity=0.163 Sum_probs=128.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~ 93 (287)
++..++..|...+..|++.+|+..|++++...|.. ..+.+.+|.++...|+++.|+..+++.++..|+++ ...+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999988765 67899999999999999999999999999999764 224566
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 94 VLIDLYKKC-----------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 94 ~l~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.+|.++... +...+|+..|+..+...|++. ....+...+..+ ...-..--+.+|..|.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-----y~~~A~~~l~~l----~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-----YAEEAKKRLAEL----RNRLAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-----THHHHHHHHHHH----HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHc
Confidence 677766543 334588999999999988522 111222211110 000133345689999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchHH---H-HHHHHHHhccCHHHHH
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKA---C-NLSHCLIKQARYTEAR 202 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~---~-~l~~~~~~~g~~~~A~ 202 (287)
|.+..|+..++.+++..|+.+.. . .++.++..+|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999999999998544 2 7999999999988554
No 87
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=4.1e-12 Score=111.50 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=141.4
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
+++...|...|-+++++++..+.++..||..|+..-+...|..+|+++.+++|.+. ..+-..++.|.+..+++.|...
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda--eaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA--EAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh--hhHHHHHHHhhccccHHHHHHH
Confidence 34577788888888888888888888888888887788888888888888888776 6777778888888888888887
Q ss_pred HHHHHhccchhhh----------h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 112 LKQKLRMIYHGEA----------F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 112 ~~~al~~~~~~~~----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.-.+-+..|.... + .......+...++. ++..+|++...|..+|.+|...|++.-|++.|.++..++|
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQs-ALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQS-ALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHH-HhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 6666665552211 1 12234556666665 7888888999999999999999999999999999999999
Q ss_pred CchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 181 DANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 181 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+.-. +..+.+...+|++.+|+..+...+...
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 98554 588889999999999999999888653
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=6.8e-11 Score=94.89 Aligned_cols=201 Identities=14% Similarity=0.058 Sum_probs=151.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------------------
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVL-------------------------- 63 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-------------------------- 63 (287)
......|++......+|.++...|++.+|+..|+++...+|....+.-..|.++
T Consensus 223 e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~ 302 (564)
T KOG1174|consen 223 HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASH 302 (564)
T ss_pred HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhh
Confidence 345667999999999999999999999999999999999988655544433333
Q ss_pred --------HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhh-------h-c
Q 023081 64 --------KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEA-------F-N 126 (287)
Q Consensus 64 --------~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~-------~-~ 126 (287)
+..+++..|+.+-+++++.+|++. ..+...|.++...|+.++|+-.|+.++.+.|. -.. | .
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 344557778888888888888776 67778888888888888888888888888762 122 2 1
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHH
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLG-WAYMQ-KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 203 (287)
.+..++|.-.... ....-|.++.++..+| .++.. ----++|.+++++++.+.|+...+ ..++.++...|++++++.
T Consensus 381 ~~~~kEA~~~An~-~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 381 QKRFKEANALANW-TIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hchHHHHHHHHHH-HHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 2334444444443 4555566777777665 33332 233478999999999999999665 489999999999999999
Q ss_pred HHHHHHhccc
Q 023081 204 VLEDVLLGKL 213 (287)
Q Consensus 204 ~~~~~l~~~~ 213 (287)
.+++.+...+
T Consensus 460 LLe~~L~~~~ 469 (564)
T KOG1174|consen 460 LLEKHLIIFP 469 (564)
T ss_pred HHHHHHhhcc
Confidence 9999998753
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=4.4e-11 Score=90.00 Aligned_cols=147 Identities=15% Similarity=0.158 Sum_probs=129.9
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+-...|.+...--.-|..+...|++++|+++|+..++.+|.+...+...-.+...+|+..+|++.+...++..+.+. +
T Consensus 78 L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--E 155 (289)
T KOG3060|consen 78 LRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--E 155 (289)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--H
Confidence 34567988888888899999999999999999999999999988888888888999999999999999999999888 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---CHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---NYTS 167 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~ 167 (287)
+|..++.+|...|+|++|.-++++++-+.|. ++-.+..+|.+++-+| ++.-
T Consensus 156 AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~--------------------------n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 156 AWHELAEIYLSEGDFEKAAFCLEELLLIQPF--------------------------NPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC--------------------------cHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999998877774 6777777888877666 5778
Q ss_pred HHHHHHHHHhhCCCchHH
Q 023081 168 AEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~ 185 (287)
|.++|.++++++|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 999999999999966444
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.42 E-value=1.2e-10 Score=90.94 Aligned_cols=183 Identities=12% Similarity=0.003 Sum_probs=138.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSA---LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
++..++..|......|++++|+..|++++...|..+.+ .+.+|.++.+.+++++|+..+++.++.+|+++. ..+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56678899999999999999999999999999987544 589999999999999999999999999997642 13566
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 94 VLIDLYKKCG---------------R---LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 94 ~l~~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+|.++...+ + ..+|+..|+..++..|+..-. ..+...+.. +...-..--+.+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya-----~~A~~rl~~----l~~~la~~e~~i 181 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT-----TDATKRLVF----LKDRLAKYELSV 181 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH-----HHHHHHHHH----HHHHHHHHHHHH
Confidence 6776643332 1 357889999999999953211 111111110 000012234468
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchH---HH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANK---AC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|..|.+.|.|..|+.-++.+++..|+.+. +. .++.+|..+|..++|..+.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 99999999999999999999999888743 33 78999999999999988776543
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.7e-12 Score=99.82 Aligned_cols=154 Identities=13% Similarity=0.077 Sum_probs=136.3
Q ss_pred CccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCH
Q 023081 2 SQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------------DSALKDMAVVLKQQDRV 69 (287)
Q Consensus 2 ~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~~~~~~g~~ 69 (287)
+.+..+..++++.++.+.++.+..|.++...++.+.|+.+|++++.++|+. ...+..-|.-.++.|++
T Consensus 186 ~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y 265 (486)
T KOG0550|consen 186 DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNY 265 (486)
T ss_pred hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccch
Confidence 345566778899999999999999999999999999999999999999886 33455678889999999
Q ss_pred HHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 70 DEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 70 ~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
..|.+.|..++.++|++. ...++...+.+....|+..+|+...+.++++++.
T Consensus 266 ~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-------------------------- 319 (486)
T KOG0550|consen 266 RKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-------------------------- 319 (486)
T ss_pred hHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH--------------------------
Confidence 999999999999999763 3356888899999999999999999999988774
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
...++...|.++...++|++|.+.|+++++...+
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5777899999999999999999999999998776
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=9.9e-12 Score=105.98 Aligned_cols=175 Identities=12% Similarity=-0.001 Sum_probs=134.1
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-.++.++ .|+++..|-.+|.+.....-|++|.++.+. ....+...+|......++++++...++..++++|-.
T Consensus 446 i~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 446 INRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred HHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc
Confidence 3344555 455677777777665555444444444432 223456666766677788888888888888888865
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
. ..|+.+|-+..+.++++.|.+.|..++.+.| ++..+|++++..|...|+-.
T Consensus 519 ~--~~wf~~G~~ALqlek~q~av~aF~rcvtL~P--------------------------d~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 519 L--GTWFGLGCAALQLEKEQAAVKAFHRCVTLEP--------------------------DNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred h--hHHHhccHHHHHHhhhHHHHHHHHHHhhcCC--------------------------CchhhhhhhhHHHHHHhhhH
Confidence 5 6777788888888888888888887666555 48999999999999999999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS 216 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 216 (287)
+|...++++++.+-++...| |...+..+.|.+++|+..+.+.+.......
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999999999997778888 899999999999999999999998864444
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.39 E-value=1.6e-11 Score=101.57 Aligned_cols=98 Identities=15% Similarity=0.018 Sum_probs=93.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+...|...+..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++ .++..+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~ 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999999999887 789999999999
Q ss_pred cCCHHHHHHHHHHHHhccch
Q 023081 102 CGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~ 121 (287)
.|++++|+..|+++++++|.
T Consensus 83 lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999988875
No 94
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.37 E-value=1.1e-09 Score=101.70 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cchhhhh------
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM--IYHGEAF------ 125 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~------ 125 (287)
.+..+...|.+.|++++|.+.|+++.+.+. .+. ..++.+...|.+.|++++|..+|+.+.+. .|+...|
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~--~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a 658 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP--EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV 658 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333344444444444444444444433321 111 23444444555555555555555554443 2222221
Q ss_pred --cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHH
Q 023081 126 --NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEA 201 (287)
Q Consensus 126 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A 201 (287)
.....+.+...++.+.....+.+..++..+...|.+.|++++|...|+++... .|+...+..|...|.+.|++++|
T Consensus 659 ~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 659 AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 12234445544444222222335566777777777777777777777766543 23322222567777777777777
Q ss_pred HHHHHHHHhc
Q 023081 202 RSVLEDVLLG 211 (287)
Q Consensus 202 ~~~~~~~l~~ 211 (287)
.++|+++...
T Consensus 739 lelf~eM~~~ 748 (1060)
T PLN03218 739 LEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHc
Confidence 7777776654
No 95
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.36 E-value=3.1e-11 Score=99.83 Aligned_cols=112 Identities=19% Similarity=0.156 Sum_probs=100.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 135 (287)
+...|..++..|++++|+..|.++++.+|++. .++..+|.+|...|++++|+..+++++.++|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------- 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDPS-------------- 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------------
Confidence 55678889999999999999999999999988 78999999999999999999999998887664
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhc
Q 023081 136 HGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQ 195 (287)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~ 195 (287)
++.+++.+|.++...|++++|+..|++++.++|++.... .++.|...+
T Consensus 69 ------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 69 ------------LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999998775 666665544
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.6e-11 Score=98.73 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=129.4
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAG--------------------------DRVDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
+...+|..+...++++.|+.+|++++... |.....-..-|..++..|+|..|+.
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 34457778888899999999999988543 2222333346888889999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|.+++..+|+++ .++.+.+.+|.+.|.+..|+...+.+++++|. ....|..
T Consensus 380 ~YteAIkr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~--------------------------~~kgy~R 431 (539)
T KOG0548|consen 380 HYTEAIKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPN--------------------------FIKAYLR 431 (539)
T ss_pred HHHHHHhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch--------------------------HHHHHHH
Confidence 9999999999888 78899999999999999999998888877664 6888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.|.++..+.+|++|++.|+++++.+|++..+. .+..|...+.......+..+++.
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~ 487 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM 487 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence 99999999999999999999999999997776 77888776544444445555533
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=1.1e-10 Score=104.53 Aligned_cols=189 Identities=16% Similarity=0.130 Sum_probs=133.8
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-------------------HHHHHHHHHHHHcCCHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-------------------SALKDMAVVLKQQDRVD 70 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------~~~~~la~~~~~~g~~~ 70 (287)
..+...|+....|+.+|.++...+++.++.-. .++...+... .+++.+|.||-.+|+.+
T Consensus 56 ~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ 133 (906)
T PRK14720 56 EHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENK 133 (906)
T ss_pred HHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChH
Confidence 35667788888888888888887777776655 5555444443 78888888888888889
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE--- 147 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 147 (287)
+|...++++++.+|+++ .+.+.+|..|... +.++|+.++.+++...-+ .+.+..+.+...+ -+..+|+
T Consensus 134 ka~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~-----~kq~~~~~e~W~k-~~~~~~~d~d 204 (906)
T PRK14720 134 KLKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITYLKKAIYRFIK-----KKQYVGIEEIWSK-LVHYNSDDFD 204 (906)
T ss_pred HHHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh-----hhcchHHHHHHHH-HHhcCcccch
Confidence 99999999988888887 7888888888888 888888888888876431 1112222222222 1222222
Q ss_pred -----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 148 -----------------TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 148 -----------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
-...+.-+=..|...++|++++.+++.+++.+|.+..+. .++.||. +.|.. ...++..+
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l 281 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYL 281 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHH
Confidence 233444455788888999999999999999999986664 8888887 44544 66666666
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
+..
T Consensus 282 ~~s 284 (906)
T PRK14720 282 KMS 284 (906)
T ss_pred HHh
Confidence 653
No 98
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.4e-09 Score=87.05 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=151.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----------------
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC---------------- 83 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------- 83 (287)
......+++...+|+++.|..-..++++..|.++.+......+|...|++.+...++.+..+..
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 4556677888889999999999999999999999999999999999999988888776654321
Q ss_pred --------hhh------hH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--c----CCChhHH
Q 023081 84 --------SKQ------AQ----------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--N----GKPTKTA 133 (287)
Q Consensus 84 --------p~~------~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~----~~~~~~a 133 (287)
++. -| ..+...++.-+..+|+.++|.+....+++...+.... . ......-
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l 313 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPL 313 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHH
Confidence 000 00 1344556777788899999999999999976554432 1 1222233
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
....++ .+...|+++..+..+|.++.+.+.|.+|..+|+.+++..|+......+|.++.++|+..+|.+.+++++...
T Consensus 314 ~k~~e~-~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 314 IKAAEK-WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHH-HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 333333 577889999999999999999999999999999999999988888899999999999999999999999553
No 99
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.34 E-value=9.6e-11 Score=100.88 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=113.2
Q ss_pred hhcCCCCchHH--HHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 023081 12 VHKLPPGDSPY--VRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--------RVDEAVEAIKS 78 (287)
Q Consensus 12 l~~~p~~~~~~--~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~ 78 (287)
....|.+.++| +..|..+...++ ...|+.+|+++++.+|+++.++..++.++.... +...+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34456666665 566777765544 789999999999999999999998888775542 23455555666
Q ss_pred HHHh--chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 79 FRHL--CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 79 ~~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++.. .|..+ .++..+|..+...|++++|...+++++.++| +..++..+|
T Consensus 410 a~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p---------------------------s~~a~~~lG 460 (517)
T PRK10153 410 IVALPELNVLP--RIYEILAVQALVKGKTDEAYQAINKAIDLEM---------------------------SWLNYVLLG 460 (517)
T ss_pred hhhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------------------CHHHHHHHH
Confidence 5554 44444 5777788888888999999999999888876 577889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.++...|++++|.+.|++|+.++|.++..
T Consensus 461 ~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 461 KVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 99999999999999999999999998764
No 100
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.34 E-value=3.4e-10 Score=95.58 Aligned_cols=202 Identities=14% Similarity=0.061 Sum_probs=132.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.+++..|++++.....|......|+-++|..+.+.++..++.....|.-+|.++....+|++|+.+|+.++...|+|.
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-- 109 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-- 109 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--
Confidence 356677777787777777777778888888887777777777777777788888777888888888888888777776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc---------CCChhHHHHHHHHHhhhc--CCC-----cHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---------GKPTKTARSHGKKFQVTV--KQE-----TSRILG 153 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~--~~~-----~~~~~~ 153 (287)
.++..++.+..++++++.....-.+.++..|...+++ ......+...++.+.-.. .|. ......
T Consensus 110 qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~L 189 (700)
T KOG1156|consen 110 QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLL 189 (700)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 6777777777777777777777777777776433321 112233333333331111 122 233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
....++.+.|.+++|++.+..--..--+..... ..+.++.++++.++|...|...+..++
T Consensus 190 y~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 190 YQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 555666677777777666544211111111111 578888999999999999999998743
No 101
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.33 E-value=3.1e-09 Score=98.75 Aligned_cols=188 Identities=16% Similarity=0.119 Sum_probs=80.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGD-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~ 96 (287)
..|..+-..+...|+.+.|...|+++.+.+. -+...|..+...|.+.|++++|+..|.++... .|+. ..++.+.
T Consensus 473 ~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---vTYnsLI 549 (1060)
T PLN03218 473 KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---VVFNALI 549 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHH
Confidence 3344444444444555555555544444321 12344444555555555555555555444332 2222 2444444
Q ss_pred HHHHHcCCHHHHHHHHHHHHh----ccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 97 DLYKKCGRLDEQIELLKQKLR----MIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~----~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
..|.+.|++++|.++|..+.. +.|+...| .....+.|...++.+.-..-+.++.+|..+...|.+.|+
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Confidence 455555555555555554433 12222111 112233344444432111112234445555555555555
Q ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 165 YTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 165 ~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
+++|...|+++... .|+...+..+...+.+.|+.++|.++++.+.+
T Consensus 630 ~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 630 WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 55555555554443 22211112344444555555555555554444
No 102
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.32 E-value=1.1e-10 Score=86.88 Aligned_cols=84 Identities=20% Similarity=0.210 Sum_probs=38.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|++. ..+..+|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP--SALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHH
Confidence 334444444444455555555555444443321 23444444444445555555555554444444433 3333444
Q ss_pred HHHHHcCCH
Q 023081 97 DLYKKCGRL 105 (287)
Q Consensus 97 ~~~~~~g~~ 105 (287)
.++...|+.
T Consensus 114 ~~~~~~g~~ 122 (172)
T PRK02603 114 VIYHKRGEK 122 (172)
T ss_pred HHHHHcCCh
Confidence 444444443
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2e-09 Score=92.40 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=146.2
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
..+..++...++...|++++|++++++....-.+...+.-..|.++..+|++++|...|...+..+|++. ..+..+..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~--~Yy~~L~~ 80 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY--DYYRGLEE 80 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHH
Confidence 4567788889999999999999999998888888889999999999999999999999999999999886 55665655
Q ss_pred HHHHc-----CCHHHHHHHHHHHHhccchhhh-------------hc-------------CCC---------------hh
Q 023081 98 LYKKC-----GRLDEQIELLKQKLRMIYHGEA-------------FN-------------GKP---------------TK 131 (287)
Q Consensus 98 ~~~~~-----g~~~~A~~~~~~al~~~~~~~~-------------~~-------------~~~---------------~~ 131 (287)
+..-. .+.+.-...|++....+|.+.+ |. |.. ..
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 54222 2456667778877776652111 10 100 01
Q ss_pred HHHHHHHHHh--hh------------cCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 132 TARSHGKKFQ--VT------------VKQETS--RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 132 ~a~~~~~~~~--~~------------~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
.....+..+. +. ..|... .+++.++..|...|++++|+.+.++++...|..+..+ ..|.++..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 1112222211 10 112222 3558889999999999999999999999999998887 89999999
Q ss_pred ccCHHHHHHHHHHHHhcc
Q 023081 195 QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~ 212 (287)
.|++.+|...++.+-...
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELD 258 (517)
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 999999999999999874
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=1.4e-10 Score=99.06 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=155.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.....-..++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++..| ++ ..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek~~-d~--~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEKDP-DP--RLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC-cc--hhHHHh
Confidence 445566678899999999999999999764 6788889999999999999999999999444 45 688889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccc--hhh-hhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIY--HGE-AFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~--~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
|++.....-|++|.++.+..-.... .+. .+....+..+..+++. .+.++|-...+|+.+|.+..+.+++..|.++|
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~-sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLER-SLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHH-HhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 8887777778888887776554421 111 1234567778888887 89999999999999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++.++|++...| |++.+|...|+..+|...+.++++.+
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999998 89999999999999999999999875
No 105
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.6e-11 Score=91.27 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=103.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~ 85 (287)
...+..+|++.+.|..||.+|+..|+++.|...|.+++++.|++++.+..+|.++.... ...++...+++++..+|.
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~ 225 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA 225 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc
Confidence 34677899999999999999999999999999999999999999999999999987764 367999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+. .....++..++.+|+|.+|+..++.+++..|.
T Consensus 226 ~i--ral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 226 NI--RALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cH--HHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 98 88999999999999999999999999999874
No 106
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.30 E-value=1.3e-11 Score=76.97 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=47.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhch
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 84 (287)
++..|..+|.++...|++++|+..|.++++.+|+++.+++++|.++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566777777777777777777777777777777777777777777777 57777777777777665
No 107
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.30 E-value=2.2e-10 Score=96.69 Aligned_cols=169 Identities=16% Similarity=0.125 Sum_probs=143.8
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|....+++..+.-.+..++|.+.+...+..++..|.+++.+...|..+...|+.++|......++..++... ..|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHHH
Confidence 445567777777888899999999999999999999999999999999999999999999999999988876 689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|.++...++|++|+++|+.|+.+.|+ +..+|..++.+..++++++.....-.+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d--------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD--------------------------NLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC--------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999998888765 6777777777777888888777777777
Q ss_pred HhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++..|.....| ..+.++...|++..|...++...+..
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777776666 67777777788887777777666553
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.29 E-value=5e-10 Score=80.79 Aligned_cols=129 Identities=20% Similarity=0.142 Sum_probs=104.6
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLI 96 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~ 96 (287)
..|.........++...+...++..+...|+. ..+.+.+|.++...|++++|...|+.++...|+..+ ..+...++
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33444555557899999999999999999888 567888999999999999999999999998765432 23577789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
.++...|++++|+..++..-.. +-.+.++..+|.++...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~---------------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE---------------------------AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc---------------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652111 1146678889999999999999999999875
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.29 E-value=2e-10 Score=85.12 Aligned_cols=107 Identities=10% Similarity=0.037 Sum_probs=86.8
Q ss_pred HhhcCCCC--chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 11 VVHKLPPG--DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 11 ~l~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
++...+.+ ...++.+|..+...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 25 ILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred hccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 33444544 5677999999999999999999999999887653 458999999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHH-------HcCCHHHHHHHHHHHHhcc
Q 023081 86 QAQESLDNVLIDLYK-------KCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~al~~~ 119 (287)
.. ..+..++.++. ..|++++|+..+.+++...
T Consensus 105 ~~--~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 143 (168)
T CHL00033 105 LP--QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYW 143 (168)
T ss_pred cH--HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHH
Confidence 65 45555566665 8889888887777776553
No 110
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.28 E-value=8e-11 Score=78.07 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=91.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++.+|..+...|++++|+..++++++..|....++..+|.++...|++++|+..+++++...|.+. ..+..++.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHH
Confidence 5788999999999999999999999999999989999999999999999999999999999999876 68889999999
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
..|++++|...+.++++..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999988765
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.28 E-value=1.6e-10 Score=80.45 Aligned_cols=103 Identities=16% Similarity=0.063 Sum_probs=92.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNV 94 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~ 94 (287)
++.++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+..|++++...|++. ...++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999988876 57899999999999999999999999999988753 1257888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|.++...|++++|...++++++..|.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999885
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.27 E-value=9.1e-11 Score=93.86 Aligned_cols=186 Identities=17% Similarity=0.136 Sum_probs=115.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
...+...++..+...++-+.++..++..+.... .++......|.++...|++++|+..+.+. .+. +.....
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~l--E~~al~ 137 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSL--ELLALA 137 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCH--HHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Ccc--cHHHHH
Confidence 344444455544444455566665554443221 22334455556666677777777766553 122 344455
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhh------hh----c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----N-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
..+|...++++.|.+.++.+.+.+.+.. +| . +..++.+.-.++.+ ....+.++.+++.++.++..+|+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El-~~~~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL-SDKFGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH-HCCS--SHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhccCCCHHHHHHHHHHHHHhCC
Confidence 6677777777777777777766655322 22 1 22455566655542 23335688999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH-HHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY-TEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~-~~A~~~~~~~l~~ 211 (287)
|++|...+++++..+|.++... |++.+...+|+. +.+.+++.+....
T Consensus 217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999999998886 999999999998 4455566665544
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.8e-10 Score=86.16 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=141.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
....+|.+||+++..-.+.+|.+...+..+|.||+...++..|..+|++.-...|... ......++.+.+.+.+..|+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~--qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE--QYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--HHHHHHHHHHHHhcccHHHH
Confidence 5677899999999999999999989999999999999999999999999999999877 45556678888999999999
Q ss_pred HHHHHHHhccch---------hhhhcCCChhHHHHHHHHHhhhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYH---------GEAFNGKPTKTARSHGKKFQVTVKQ--ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~---------~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
............ ...|....+..+...++ ..| +++.+..+.|.+.++.|+++.|++-|+.+++.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve-----Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE-----QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH-----hccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 887766553211 11111222222333322 234 57888999999999999999999999999998
Q ss_pred CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..-.+.. ++++.++...|++..|+++..+.++..
T Consensus 174 sGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 7766544 799999999999999999999888776
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.26 E-value=6.9e-10 Score=99.61 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=113.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh------
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA------ 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------ 87 (287)
-.|++..++..+...+...+++++|+..++.++...|+...+++.+|.++.+.++++++... .++...+.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 46888999999999999999999999999999999999999999999999999998887766 5555544221
Q ss_pred -----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 88 -----------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 88 -----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
...++..+|.+|-+.|++++|...|+++++.+|. ++.+++++|
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--------------------------n~~aLNn~A 157 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--------------------------NPEIVKKLA 157 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--------------------------cHHHHHHHH
Confidence 0136777888999999999999999988877654 788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..|... ++++|++++.+|+..
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH
Confidence 888888 888888888888764
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.26 E-value=8.5e-10 Score=99.99 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=122.9
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNV 94 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 94 (287)
.+...+..+...|...|++++|.+.|++.. +.+..+|..+...|.+.|++++|+..|++.... .|+. ..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~---~t~~~ 330 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ---FTFSI 330 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHH
Confidence 355666677777888888888888887652 345577888888888888888888888877653 3443 35666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccc--h-------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIY--H-------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~--~-------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
+...+.+.|++++|.+.+..+++... + ...| .....+.|...++.. ...+..+|+.+...|.+.|+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m----~~~d~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM----PRKNLISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC----CCCCeeeHHHHHHHHHHcCC
Confidence 77777777888888877777776542 1 1112 123455555555532 11255677777778888888
Q ss_pred HHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.++|++.|+++... .|+......+..++...|..++|..+|+...+.
T Consensus 407 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 88888888877653 344333346667777777777777777777653
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.26 E-value=3.3e-10 Score=78.78 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
..++.+|..+...|++++|+..|.+++..+|++.. ......+|.++...|++++|+..|+.++...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----------- 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-----------
Confidence 56777888888888888888888888887775421 145667788888888888888888887776552
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.+..+.++..+|.++...|++++|+..+++++...|++...
T Consensus 72 ------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 72 ------------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred ------------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 11135667778888888888888888888888887776543
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.25 E-value=6.2e-11 Score=76.97 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=70.2
Q ss_pred hCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
+|+++.|+..|++++...|. +...++.+|.++++.|++++|+.++++ ...+|.+. .....+|.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCCHHHHH
Confidence 68999999999999999985 456788899999999999999999999 77777665 56777899999999999999
Q ss_pred HHHHHH
Q 023081 110 ELLKQK 115 (287)
Q Consensus 110 ~~~~~a 115 (287)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 118
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.24 E-value=5.4e-11 Score=73.20 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=56.6
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999988763
No 119
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.23 E-value=4e-10 Score=96.88 Aligned_cols=129 Identities=19% Similarity=0.091 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
.|...+..+...++.++|.-++.++-.++|-.+ ..++..|.++...|.+++|.+.|..++.++|+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~--~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------------- 716 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSA--SVYYLRGLLLEVKGQLEEAKEAFLVALALDPD------------- 716 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH--HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-------------
Confidence 344455555555555555555555555555444 44555555555555555555555555555443
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV--VYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++.+...+|.++.+.|+..-|.. .+..+++.+|.++.+| .+|.++..+|+.++|..+|..+++.
T Consensus 717 -------------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 717 -------------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred -------------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 44455555555555555544444 5555555555555554 4555555555555555555555554
No 120
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=2.1e-09 Score=82.06 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++..|..+...|++.+|+..|++++...|... ...+...+|.++...|++++|+..+++.++..|..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-------- 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-------- 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--------
Confidence 467899999999999999999999999999999653 22568889999999999999999999999998841
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCchH---------------
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-----------NYTSAEVVYRKAQLIDPDANK--------------- 184 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~--------------- 184 (287)
|.-+.+++.+|.++.... ...+|+..|+..+...|+.+-
T Consensus 76 ---------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 76 ---------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred ---------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 234667788888766543 346899999999999998641
Q ss_pred ---HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 185 ---ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 185 ---~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
-+.+|..|.+.|.+..|+..++.+++.++.............+....++
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence 0157899999999999999999999986444333344444444444444
No 121
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=1.1e-10 Score=72.74 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccc
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIY 120 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~ 120 (287)
++.+|..+|.++...|++++|+..|.++++.+|+++ .++..+|.+|..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 468899999999999999999999999999999988 89999999999999 79999999999999876
No 122
>PLN03077 Protein ECB2; Provisional
Probab=99.22 E-value=1.9e-09 Score=100.00 Aligned_cols=185 Identities=10% Similarity=0.016 Sum_probs=146.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l 95 (287)
+...+..+-..|...|+.++|...|... +.+..+|..+...|...|+.++|++.|++..+. .|+.. .+..+
T Consensus 523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~---T~~~l 595 (857)
T PLN03077 523 DGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV---TFISL 595 (857)
T ss_pred cceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc---cHHHH
Confidence 3444455667788899999999999775 455688999999999999999999999988764 45543 56666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---cchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRM---IYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...+.+.|.+++|..+|+.+.+. .|+...| .....++|...++. ....| ++.+|..+-..+...|+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~--m~~~p-d~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK--MPITP-DPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHcCC
Confidence 77788899999999999998843 3433332 23457778877775 34455 46778888888899999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+.+....++++++.|++...+ .|+.+|...|++++|.+..+...+..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 9999999999999999998776 78999999999999999999888765
No 123
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.22 E-value=8.6e-10 Score=99.96 Aligned_cols=188 Identities=13% Similarity=0.023 Sum_probs=155.7
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDN 93 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~ 93 (287)
+.+...+..+...|...|++++|...|++..+ | +..+|..+...|.+.|+.++|++.|+++.+. .|+. ..+.
T Consensus 357 ~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~ 430 (697)
T PLN03081 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH---VTFL 430 (697)
T ss_pred CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH---HHHH
Confidence 56778888999999999999999999988754 3 4478999999999999999999999998765 4554 4678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc---cchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRM---IYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
.+...+...|..++|.++|+.+.+. .|....| .....++|.+.++. ....| +..+|..+...+...
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~--~~~~p-~~~~~~~Ll~a~~~~ 507 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR--APFKP-TVNMWAALLTACRIH 507 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH--CCCCC-CHHHHHHHHHHHHHc
Confidence 8888999999999999999999863 3433222 23356777777664 23334 567799999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+++.|...+++.+...|++...+ .|+.+|...|++++|.+.++...+..
T Consensus 508 g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 508 KNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred CCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999886665 79999999999999999999988765
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=8.1e-10 Score=81.86 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=91.9
Q ss_pred hCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A 108 (287)
..++..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.|+.. ...++..+|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344666666665555555444 66789999999999999999999999998876532 124788999999999999999
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHH
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM-------QKGNYT-------SAEVVYRK 174 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~ 174 (287)
+..+++++.+.|. ....+.++|.++. ..|+++ +|+.+|++
T Consensus 92 ~~~~~~Al~~~~~--------------------------~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 92 LEYYFQALERNPF--------------------------LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHHHHHHHhCcC--------------------------cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 9999999888663 4455566666666 777776 44444455
Q ss_pred HHhhCCCc
Q 023081 175 AQLIDPDA 182 (287)
Q Consensus 175 al~~~~~~ 182 (287)
++..+|.+
T Consensus 146 a~~~~p~~ 153 (168)
T CHL00033 146 AIALAPGN 153 (168)
T ss_pred HHHhCccc
Confidence 55566654
No 125
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.21 E-value=6.6e-10 Score=98.04 Aligned_cols=198 Identities=12% Similarity=0.067 Sum_probs=147.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhchhh
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ-----QDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+..|+-...+-...........+.++.-++.+++...-+.....+..+..++. ..+...|+..|-++++++|..
T Consensus 412 ~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~ 491 (1238)
T KOG1127|consen 412 ANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSL 491 (1238)
T ss_pred HhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccch
Confidence 445566666666666666666667777777776666665554444444433322 245889999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhhc-CCChhHHHHHHHHHhhhcCCC--cHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAFN-GKPTKTARSHGKKFQVTVKQE--TSRILGNL 155 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~-~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 155 (287)
+ ..+..+|.+|...-+...|..+|+++.++++.. ..|. ...++.+....-. .-+..|. -...|..+
T Consensus 492 a--paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~-~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 492 A--PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR-AAQKAPAFACKENWVQR 568 (1238)
T ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH-HhhhchHHHHHhhhhhc
Confidence 7 789999999999999999999999999999831 2221 2233444333222 2222222 24457779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|..|.+.+++.+|+..|+.++..+|.+...| .+|.+|...|++..|++.|.++....
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 9999999999999999999999999998888 89999999999999999999999873
No 126
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.20 E-value=3.9e-10 Score=74.65 Aligned_cols=98 Identities=29% Similarity=0.355 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
+++.+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|++.+++++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPD------------- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------------
Confidence 355666666666777777777777666666554 45566666666666666666666666555442
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
+..++..+|.++...|++++|...+.+++...|
T Consensus 67 -------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 67 -------------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred -------------chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 345566666666666666666666666665554
No 127
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.20 E-value=7.6e-09 Score=80.88 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=128.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
..+..++..|..+...|++++|+..|++++...|...+. .....+|.+|.+.+++++|+..+++.++..|.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~-------- 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-------- 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC--------
Confidence 356778899999999999999999999999999976422 34678999999999999999999999999884
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCchH-------
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---------------N---YTSAEVVYRKAQLIDPDANK------- 184 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~------- 184 (287)
+|+.+.+++.+|.++...+ + ..+|+..|++.+...|+..-
T Consensus 102 ---------------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 102 ---------------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred ---------------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 3446788888998865543 1 25788999999999998641
Q ss_pred -----------HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 185 -----------ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 185 -----------~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
-+.+|..|.+.|.+..|+.-++.+++.++..+.....+....+....++..
T Consensus 167 l~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~ 228 (243)
T PRK10866 167 LVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLN 228 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCCh
Confidence 015788899999999999999999998766655555555555555555543
No 128
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-09 Score=84.94 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
..+.-+.-++.-+..+|+++ +-|..+|.+|...|++..|...|.+++++.|+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-------------------------- 188 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRLAGD-------------------------- 188 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--------------------------
Confidence 34555556666667777766 66777777777777777777777777777654
Q ss_pred cHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 148 TSRILGNLGWAYMQKG---NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
++..+..+|.++.... .-.++...+++++..+|.+.... .||..++..|++.+|...++..++..+.+.+..
T Consensus 189 n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 189 NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 5666666666655443 34567777777777777776664 677777777777777777777777654444443
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.9e-09 Score=87.43 Aligned_cols=215 Identities=17% Similarity=0.152 Sum_probs=141.8
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++...|++.++...--.+....+.|++|+...+.-....... ...+..|.|.++.+..++|+..++ ..++.+.
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~-- 110 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD-- 110 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccch--
Confidence 4566678888888887777888888888885443322211111 222678888899999999988888 2233333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhhcCCChhH--HHHHH--HHHhhhcCCC-cHHHHHHHHHHHHHcC
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAFNGKPTKT--ARSHG--KKFQVTVKQE-TSRILGNLGWAYMQKG 163 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~--a~~~~--~~~~~~~~~~-~~~~~~~lg~~~~~~g 163 (287)
.+....++++++.|+|++|.+.|+..++..... +.-.....-. +.... .. .+...|. +.+.+++.+.++...|
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q-~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ-SVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH-hccCCCcchHHHHHHHHHHHHhcc
Confidence 477778999999999999999999988765421 1110000000 00111 11 3344454 6778999999999999
Q ss_pred CHHHHHHHHHHHHhh--------CCCch------HH--HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 164 NYTSAEVVYRKAQLI--------DPDAN------KA--CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 164 ~~~~A~~~~~~al~~--------~~~~~------~~--~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
+|.+|++.+++++.+ +.+.. .. ..|+.++..+|+..+|...|...++..+ .+.....-+..
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~---~D~~~~Av~~N 266 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP---ADEPSLAVAVN 266 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC---CCchHHHHHhc
Confidence 999999999999442 11111 11 1789999999999999999999998743 33333344445
Q ss_pred HHHhccc
Q 023081 228 LLQELEP 234 (287)
Q Consensus 228 ~l~~l~~ 234 (287)
.|-.+..
T Consensus 267 NLva~~~ 273 (652)
T KOG2376|consen 267 NLVALSK 273 (652)
T ss_pred chhhhcc
Confidence 5544443
No 130
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.18 E-value=5.2e-09 Score=84.15 Aligned_cols=173 Identities=19% Similarity=0.222 Sum_probs=128.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--R----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~ 88 (287)
.+.|...|..|...+++++|...|.++..... + ....+...+.+|... ++++|+.++++++.+.-.. ..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46678899999999999999999999975431 1 145566777777666 9999999999999874321 22
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 89 ESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 89 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
......+|.+|... |++++|+++|+++++..... ........++..+|.++...|+|++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--------------------~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--------------------GSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--------------------CChhhHHHHHHHHHHHHHHhCCHHH
Confidence 35788899999999 99999999999999986420 0000025567789999999999999
Q ss_pred HHHHHHHHHhhCCCch-------HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDAN-------KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~-------~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|++.|++.....-+.+ ..+ ..+.|+...|+...|...+++.....
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999887543321 122 56788899999999999999998774
No 131
>PRK15331 chaperone protein SicA; Provisional
Probab=99.17 E-value=2.6e-09 Score=76.14 Aligned_cols=116 Identities=15% Similarity=0.080 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
...+..|.-++.+|++++|...|+-..-.++. ++..|+.||.++..+++|++|+
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--------------------------n~~Y~~GLaa~~Q~~k~y~~Ai 91 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY--------------------------NPDYTMGLAAVCQLKKQFQKAC 91 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--------------------------cHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999876665543 7888999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
..|..+..++++++... +.|.|+..+|+...|...|..++.. +.+.....++...|..+...
T Consensus 92 ~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~----~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 92 DLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER----TEDESLRAKALVYLEALKTA 154 (165)
T ss_pred HHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHHcc
Confidence 99999999999987774 9999999999999999999999974 45666677888888877654
No 132
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=99.16 E-value=1e-08 Score=73.95 Aligned_cols=168 Identities=15% Similarity=0.065 Sum_probs=138.3
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHcCC
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-CSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
+......=|++...+-..+.+...|.. .-.+.||..+...|++.+|...|++++.- ..+++ .+...+++..+..++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~ 139 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhcc
Confidence 344455567777777777888888876 77889999999999999999999999763 33445 577788889999999
Q ss_pred HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 105 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
+..|...+++..+..|... ++.....+|.++...|++.+|...|+.++...|+...
T Consensus 140 ~A~a~~tLe~l~e~~pa~r------------------------~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFR------------------------SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHHHHHHHHHHhhcCCccC------------------------CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHH
Confidence 9999999999988877422 5777888999999999999999999999999999888
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchh
Q 023081 185 ACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETK 220 (287)
Q Consensus 185 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 220 (287)
....+..+.++|+.++|..-+..+.+....+..++.
T Consensus 196 r~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 196 RIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH
Confidence 888999999999999998888777766544555543
No 133
>PRK11906 transcriptional regulator; Provisional
Probab=99.16 E-value=6.9e-09 Score=85.69 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=133.6
Q ss_pred cCCCCc---hHH----HHhHHhHHhhC---CHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CCHHH
Q 023081 14 KLPPGD---SPY----VRAKHVQLVEK---DPEAAIVLFWKAI---NAGDRVDSALKDMAVVLKQQ---------DRVDE 71 (287)
Q Consensus 14 ~~p~~~---~~~----~~lg~~~~~~~---~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~---------g~~~~ 71 (287)
..|.+. ++| +..|...+..+ ....|+.+|.+++ ..+|+.+.++..+|.|++.. ....+
T Consensus 243 ~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~ 322 (458)
T PRK11906 243 LAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQK 322 (458)
T ss_pred CCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 335555 444 77777776654 4567899999999 99999999999999998765 24678
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 72 AVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 72 A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
|....+++++++|.++ .+...+|.+....++++.|...|++++.++|+ .+.+
T Consensus 323 a~~~A~rAveld~~Da--~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn--------------------------~A~~ 374 (458)
T PRK11906 323 ALELLDYVSDITTVDG--KILAIMGLITGLSGQAKVSHILFEQAKIHSTD--------------------------IASL 374 (458)
T ss_pred HHHHHHHHHhcCCCCH--HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc--------------------------cHHH
Confidence 8999999999999998 67778888888889999999999998777664 8999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHH-HHHhccCHHHHHHHHHHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSH-CLIKQARYTEARSVLEDV 208 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~-~~~~~g~~~~A~~~~~~~ 208 (287)
|+..|++....|+.++|.+.++++++++|....+. .+-. .|. ....++|+..|-+-
T Consensus 375 ~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 375 YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 99999999999999999999999999999875543 3333 343 44567788777543
No 134
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.15 E-value=4.1e-10 Score=90.60 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=134.2
Q ss_pred CchHHHHhHHhHHhhCC--------------------HHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHH
Q 023081 18 GDSPYVRAKHVQLVEKD--------------------PEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDE 71 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~ 71 (287)
...++|++|.+|..+|. ++.|.++|+.-+++... ...++-+||..|+-+|+|+.
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 46789999999988765 45566777666554322 23567789999999999999
Q ss_pred HHHHHHHHHHhchhh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC
Q 023081 72 AVEAIKSFRHLCSKQ----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 72 A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
|+..-+.-+.+.... +.-.++..+|+++...|+++.|++.|...+.+ ++++...
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L----------------------Aielg~r 271 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL----------------------AIELGNR 271 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH----------------------HHHhcch
Confidence 999988877764422 23357888999999999999999999998877 3333222
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-------HHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 148 --TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-------KACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 148 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+...+.+|+.|.-..++++|+.++.+-+.+...-. ..|.||.++-.+|..++|+.+.+..++..
T Consensus 272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999887654321 23589999999999999999998888765
No 135
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=3.1e-08 Score=81.38 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=168.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHH-HHHHcCCHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------DSALKDMAV-VLKQQDRVDEAVEA 75 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~la~-~~~~~g~~~~A~~~ 75 (287)
-+..+.+..+|.+.++|+..-+.....|+.+.-.+.|++|+..-|-. ...|.+.+. .-....+.+.+.++
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35567899999999999998888888999999999999999877653 222333332 12456899999999
Q ss_pred HHHHHHhchhh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC--------ChhHHHHHHHHHhhhcC
Q 023081 76 IKSFRHLCSKQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK--------PTKTARSHGKKFQVTVK 145 (287)
Q Consensus 76 ~~~~~~~~p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~ 145 (287)
|+.++++-|.. ....+|...+..-.++.+...|.+.+-.++...|....+.+. ..+.....+++| +...
T Consensus 389 yq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf-le~~ 467 (677)
T KOG1915|consen 389 YQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF-LEFS 467 (677)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH-HhcC
Confidence 99999999843 344789999999999999999999999999999977666443 356667777774 8899
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-hHH-H-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-NKA-C-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.+..+|...|.+-..+|+.+.|...|.-|++...-+ +.. | .....-...|.++.|..+|++.++..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999876544 555 4 56667788999999999999999875
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=5.7e-10 Score=72.43 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV 144 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 144 (287)
..|+++.|+.+++++++..|.+.....+..+|.+|+..|+|++|+..+++ .+..+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~----------------------- 56 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS----------------------- 56 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-----------------------
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-----------------------
Confidence 36899999999999999999532225677799999999999999999998 555442
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 145 KQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...+.+|.++..+|++++|+..|+++
T Consensus 57 ---~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 57 ---NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp ---HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 5677778899999999999999999875
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=7.6e-09 Score=74.63 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=96.9
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~ 143 (287)
..++...+...++..+..+|+.++. .....++.++...|++++|...|+.++...++..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-------------------- 82 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-------------------- 82 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--------------------
Confidence 5788999989999999999977322 4577799999999999999999999998754200
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
-.+.+.+.+|.++...|++++|+..++.. ...+-.+..+ .+|.++...|++++|+..|++++
T Consensus 83 ---l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 ---LKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 02557888999999999999999999763 2222223444 79999999999999999999875
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.11 E-value=2.4e-09 Score=84.31 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=91.6
Q ss_pred chHHHHhHHhH-HhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHH
Q 023081 19 DSPYVRAKHVQ-LVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDN 93 (287)
Q Consensus 19 ~~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~ 93 (287)
....|..|..+ +..|+|++|+..|+..+...|+. +.+++.+|.+|+..|++++|+..|++++...|+++ ...++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46778888776 55799999999999999999987 57999999999999999999999999999999753 225788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|.++...|++++|...|+++++.+|.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999999985
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.11 E-value=6.6e-10 Score=68.32 Aligned_cols=64 Identities=28% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.+|..+...|++++|+..|+++++..|. ++.+++.+|.++..+|++++|+.+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--------------------------NPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--------------------------HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666777777777777776665543 56677777777777777777777777
Q ss_pred HHHhhCCCch
Q 023081 174 KAQLIDPDAN 183 (287)
Q Consensus 174 ~al~~~~~~~ 183 (287)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 7777777653
No 140
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.10 E-value=1.1e-08 Score=76.07 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
...+++.+|..+...|++++|+.+|+++++..|+.. ...++..+|.++...|++++|+..+++++...|.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------- 104 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--------- 104 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---------
Confidence 355567777777777777777777777776655422 1146667777777777777777777776655443
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
++..+..+|.++...|+...+...+..
T Consensus 105 -----------------~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 105 -----------------QPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred -----------------cHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 566667777777777665554444433
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.10 E-value=5e-09 Score=82.52 Aligned_cols=107 Identities=17% Similarity=0.237 Sum_probs=60.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 54 SALKDMAVVL-KQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 54 ~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
...+..|..+ ...|++++|+..|+..+..+|+..+ ..+++.+|.+|...|++++|+..|+++++.+|.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------- 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------- 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence 3444555544 3456666666666666666665421 135556666666666666666666666655542
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
+|..+.+++.+|.++...|++++|...|+++++..|+..
T Consensus 213 -------------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 213 -------------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred -------------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 122455566666666666666666666666666655543
No 142
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.08 E-value=8.3e-09 Score=70.83 Aligned_cols=97 Identities=25% Similarity=0.229 Sum_probs=84.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh---hhHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK---QAQESLD 92 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 92 (287)
+.+.|.+|..+-..|+.++|+.+|++++...... ..++..+|.++...|++++|+..+++.+...|+ +. .+.
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALR 78 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHH
Confidence 3578999999999999999999999999976443 578999999999999999999999999999887 34 456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
..++.++...|++++|+..+-.++.
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6678899999999999999887764
No 143
>PLN03077 Protein ECB2; Provisional
Probab=99.06 E-value=7.2e-08 Score=89.64 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHH
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--DPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTIN 223 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 223 (287)
+.+..+|+.+...|...|+.++|+..|+++.+. .|+......+..++.+.|..++|..+|+...+... ...+...|.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g-i~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC-CCCchHHHH
Confidence 445667777778888888888888888877663 34444444566677778888888888887774421 223445666
Q ss_pred HHHHHHHhcccc
Q 023081 224 RVKELLQELEPW 235 (287)
Q Consensus 224 ~~~~~l~~l~~~ 235 (287)
-....+.+.+..
T Consensus 630 ~lv~~l~r~G~~ 641 (857)
T PLN03077 630 CVVDLLGRAGKL 641 (857)
T ss_pred HHHHHHHhCCCH
Confidence 677777776664
No 144
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=2e-09 Score=76.76 Aligned_cols=102 Identities=6% Similarity=-0.176 Sum_probs=94.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.++.-+..|..|.-++..|++++|...|+-....+|.++..+..||.++...++|++|+..|..+..+.++++ ...+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--Cccch
Confidence 4445677889999999999999999999999999999999999999999999999999999999999999888 67888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.|.+|...|+.+.|..+|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999985
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.04 E-value=9.8e-08 Score=82.11 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=136.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhchhhhH-
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-----RVDEAVEAIKSFRHLCSKQAQ- 88 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~- 88 (287)
-++.....-..|.++...|++++|...|+..|..+|++...+..+..+..... +.+.-...|++.....|....
T Consensus 34 I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~ 113 (517)
T PF12569_consen 34 ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAP 113 (517)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccch
Confidence 45666778889999999999999999999999999999888888888873333 456667777777666553210
Q ss_pred -----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------cchhh
Q 023081 89 -----------------------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRM----------------IYHGE 123 (287)
Q Consensus 89 -----------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~ 123 (287)
..+...+-.+|.......-...++...... .|...
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 011222222222111111111122221111 01110
Q ss_pred hh----------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 124 AF----------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 124 ~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.| .-..+..|..++++ ++...|..++.++..|.++-..|++.+|..+++.+-.+++.+--.. ..+..+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~-aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDK-AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 11 12246677777777 7888888999999999999999999999999999999999887665 678888
Q ss_pred HhccCHHHHHHHHHHHHhc
Q 023081 193 IKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 193 ~~~g~~~~A~~~~~~~l~~ 211 (287)
.+.|++++|...+......
T Consensus 273 LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHCCCHHHHHHHHHhhcCC
Confidence 9999999999998877654
No 146
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=7e-07 Score=71.93 Aligned_cols=213 Identities=13% Similarity=0.131 Sum_probs=152.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
+...-.|...+......||++.|=.++.++-+..++ ...+....+......|+++.|.....++++..|.++ .+...
T Consensus 115 e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~--~vlrL 192 (400)
T COG3071 115 EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP--EVLRL 192 (400)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh--HHHHH
Confidence 334456677778888999999999999999887433 356777888999999999999999999999999888 78888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchh---------hhhcCC-----ChhHH---HHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHG---------EAFNGK-----PTKTA---RSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~-----~~~~a---~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
...+|...|+|.+....+.+.-+..-.+ .++.+- ....+ ..+.+. ....-.+++.+-..++.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~-~pr~lr~~p~l~~~~a~ 271 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN-QPRKLRNDPELVVAYAE 271 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh-ccHHhhcChhHHHHHHH
Confidence 8999999999999999888777643211 111110 00011 112221 11112235777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHh-------------------------------hCCCchHHH-HHHHHHHhccCHHHHHHHH
Q 023081 158 AYMQKGNYTSAEVVYRKAQL-------------------------------IDPDANKAC-NLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~-------------------------------~~~~~~~~~-~l~~~~~~~g~~~~A~~~~ 205 (287)
-+...|+.++|.+..+++++ ..|+++..+ .||..+.+.+.+.+|..+|
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888888888888877765 345555555 7999999999999999999
Q ss_pred HHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 206 EDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+.+++..+ ....+......+..++..
T Consensus 352 eaAl~~~~----s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 352 EAALKLRP----SASDYAELADALDQLGEP 377 (400)
T ss_pred HHHHhcCC----ChhhHHHHHHHHHHcCCh
Confidence 99998742 222235556666666654
No 147
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=4e-08 Score=80.70 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=175.2
Q ss_pred ccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 3 QTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 3 ~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.|.++.+.|..+.-+...|+.-|+-...++++..|...|++|+..+..+...|...+.+-++......|...+.+++..
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 45778888899998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC--------CChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG--------KPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
-|.-. .+|+....+-...|+...|.+.|++-++..|...+++. +..+.+.+.+++|.+.. | ....|..
T Consensus 137 lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P-~v~~wik 212 (677)
T KOG1915|consen 137 LPRVD--QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-P-KVSNWIK 212 (677)
T ss_pred cchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-c-cHHHHHH
Confidence 99654 57777766667789999999999999999998777632 24567888888764333 4 5778899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+..-.+.|...-|...|.+|+..-.++... . ..+..-..+..++.|..+|.-+++.-+
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999876665332 2 456666788899999999999998753
No 148
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.02 E-value=6.2e-09 Score=76.92 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=69.2
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
+|-|+-+.+...|+-++++.++|..+...|+++.|.+.|...++++|..-.++.+.|..++.-|++.-|.+-+.+..+.+
T Consensus 84 AR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 84 ARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 35566666777777777777777777777777777777777777777776777777777777777777777777777777
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
|+++.-.+|..+.. ..-++.+|..
T Consensus 164 ~~DPfR~LWLYl~E---~k~dP~~A~t 187 (297)
T COG4785 164 PNDPFRSLWLYLNE---QKLDPKQAKT 187 (297)
T ss_pred CCChHHHHHHHHHH---hhCCHHHHHH
Confidence 76664444443322 2334555544
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.01 E-value=2.2e-09 Score=66.60 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=58.6
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++ .++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP--EYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH--HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH--HHHHHHhc
Confidence 5689999999999999999999999999999999999999999999999999999876 55555543
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.00 E-value=2.2e-08 Score=82.96 Aligned_cols=121 Identities=22% Similarity=0.283 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.+-..+...++++.|+..+++..+.+|+ ....++.++...++..+|+..+++++...|.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~---------------- 232 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQ---------------- 232 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC----------------
Confidence 3455666778999999999999998876 3445788888899999999999998866553
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
+...+...+..+...++++.|+...++++...|++...| .|+.+|..+|++++|+..++.+-
T Consensus 233 ----------d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 233 ----------DSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 788899999999999999999999999999999998888 89999999999999998887554
No 151
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.3e-08 Score=82.18 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+.+++.+|.+.++|.+|+....++|...|. ++.+++..|.++...|+|+.|+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--------------------------N~KALyRrG~A~l~~~e~~~A~ 311 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN--------------------------NVKALYRRGQALLALGEYDLAR 311 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--------------------------chhHHHHHHHHHHhhccHHHHH
Confidence 46778899999999999999999999988765 8899999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHH-HHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYT-EARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~-~A~~~~~~~l~~~ 212 (287)
..|++++++.|++-.+. .|..+-.+..++. ...++|..++...
T Consensus 312 ~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 312 DDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999996664 6777766655544 4478888888764
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.00 E-value=2.4e-08 Score=82.71 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=105.3
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD 106 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 106 (287)
.+....+.++.|+..|++..+.+|+ +...++.++...++..+|+..+.+++...|.+. .+....+..+...++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCCHH
Confidence 4455678999999999999888874 567799999999999999999999999999887 78889999999999999
Q ss_pred HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 107 EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 107 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.|+...+++....|. +...|..|+.+|...|+++.|+..+..+
T Consensus 252 lAL~iAk~av~lsP~--------------------------~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPS--------------------------EFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCch--------------------------hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999998888775 7889999999999999999999887754
No 153
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-09 Score=87.50 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=126.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--hh--hHHHHHHHHHH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--KQ--AQESLDNVLID 97 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~--~~~~~~~~l~~ 97 (287)
|.-....|+....+.+|+.|++...++ ..+|..||.+|+.+++|++|+++-..=+.+.. .+ ......-.+|+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 445677899999999999999888665 45677899999999999999987654433321 11 11134556788
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc--------------hhhhhc--CCC-------------------hhHHHHHHHHHhh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIY--------------HGEAFN--GKP-------------------TKTARSHGKKFQV 142 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~--~~~-------------------~~~a~~~~~~~~~ 142 (287)
++.-.|.|++|+.+..+-+.+.. .+.+|. |+. +..|..++.. .+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e-NL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME-NL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH-HH
Confidence 88888999999988777666432 233342 110 2223333322 22
Q ss_pred hcCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 143 TVKQ--E----TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 143 ~~~~--~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.+.. . ...++-++|+.|+-.|+|++|+..-+.-+.+...+.+ ++ +||.++.-+|+++.|+++|...+
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 2211 1 3456788999999999999999998888876655421 22 89999999999999999998866
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
...
T Consensus 263 ~LA 265 (639)
T KOG1130|consen 263 NLA 265 (639)
T ss_pred HHH
Confidence 543
No 154
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-08 Score=80.38 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+++.++.++++|.+|+....++|..+|++..+. .-|.++..+|+++.|+..|+++++.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555554442 5555555555555555555555554
No 155
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.97 E-value=3.4e-07 Score=70.05 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=137.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
.++.+|.-|...+..|++++|++.|+.+....|.. ..+...++.++++.+++++|+..+++.+.+.|.++- .-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788999999999999999999999998877654 678899999999999999999999999999997641 12455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 94 VLIDLYKKC--------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 94 ~l~~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
..|.+++.. .-..+|+..|+..+...|+.. ...++..-+..+ +..-..--..+|..|.+.|.+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-----Ya~dA~~~i~~~----~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-----YAPDAKARIVKL----NDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc-----chhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcCh
Confidence 566665532 224567778888888888421 111111111111 000123345689999999999
Q ss_pred HHHHHHHHHHHhhCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcccCCCC
Q 023081 166 TSAEVVYRKAQLIDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGKLSGST 217 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 217 (287)
..|...++.+++.-|+.... + .+..+|..+|-.++|...- +++..+.+++.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 99999999999987776433 3 7899999999999887654 46665444443
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=2e-08 Score=80.77 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=119.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhh----h
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--DR----VDSALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQ----A 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~----~ 87 (287)
...+...+.++.. .++++|+.+|++++... .+ -...+..+|.+|... |++++|+++|+++++..... .
T Consensus 75 a~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 75 AKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence 3455666666544 49999999999998753 11 256788999999999 99999999999999885422 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
.......++.++...|+|++|++.|++......... .........+...+.+++..|++..
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-------------------l~~~~~~~~~l~a~l~~L~~~D~v~ 214 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-------------------LLKYSAKEYFLKAILCHLAMGDYVA 214 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-------------------TTGHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-------------------ccchhHHHHHHHHHHHHHHcCCHHH
Confidence 235678899999999999999999999887532100 0001123456678889999999999
Q ss_pred HHHHHHHHHhhCCCchHH--H----HHHHHHH--hccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKA--C----NLSHCLI--KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~--~----~l~~~~~--~~g~~~~A~~~~~~~l~~ 211 (287)
|...+++....+|..... . .|..++. ....+.+++.-|...-.+
T Consensus 215 A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 215 ARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 999999999998876432 1 4555553 344566777776665554
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.96 E-value=9.1e-08 Score=82.74 Aligned_cols=139 Identities=11% Similarity=-0.070 Sum_probs=100.7
Q ss_pred cCCCCHHHH--HHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH--------HHHHHHHH
Q 023081 48 AGDRVDSAL--KDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD--------EQIELLKQ 114 (287)
Q Consensus 48 ~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~ 114 (287)
..|.+..+| +..|.-+...++ ...|+.+|+++++++|+++ .++..++.+|.....+. .+....++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--YAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345665554 455666665544 8899999999999999987 44444455544332222 12222222
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHH
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
++ .+...|.++.++..+|..+...|++++|...+++++.++|+ ...+ .+|.++.
T Consensus 410 a~------------------------al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~ 464 (517)
T PRK10153 410 IV------------------------ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYE 464 (517)
T ss_pred hh------------------------hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 11 22345667888999999999999999999999999999995 4454 8999999
Q ss_pred hccCHHHHHHHHHHHHhccc
Q 023081 194 KQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 194 ~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|++++|+..|++++...+
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999853
No 158
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=4.4e-07 Score=69.39 Aligned_cols=202 Identities=15% Similarity=0.117 Sum_probs=127.4
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
...++.+....++-++-+....+.+... ..+...+..-|.+|...|++++|+........+ ++.-.-..++
T Consensus 75 vr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------E~~Al~VqI~ 147 (299)
T KOG3081|consen 75 VRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-------EAAALNVQIL 147 (299)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-------HHHHHHHHHH
Confidence 3344444444555555554444443322 222234455567777888888888777663222 2222233456
Q ss_pred HHcCCHHHHHHHHHHHHhccch------hhhh-----cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 100 KKCGRLDEQIELLKQKLRMIYH------GEAF-----NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~------~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+..+.+-|...++++.+++.+ +.+| .+....++--.++.+ ....|.++...+.++.++..+|+|++|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~-s~k~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEEL-SEKTPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHH-hcccCCChHHHccHHHHHHHhcCHHHH
Confidence 6667778888888888777652 2333 122344444444432 223455788899999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
...++.++..+++++... |+..+-..+|...++..-+-.-+....+.....+.+.....-+.+
T Consensus 227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ekeaeFDr 290 (299)
T KOG3081|consen 227 ESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEKEAEFDR 290 (299)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999998886 888888899998888877766665543344444554444444443
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.93 E-value=7.1e-08 Score=66.27 Aligned_cols=101 Identities=20% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+++.+|.++-..|+.++|+.+|++++....... ....+..+|..+...|++++|+..+++++...|.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~----------- 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD----------- 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----------
Confidence 4566677777777777777777777766543221 1245666666666667777777666666554442
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
++.+..+...++.++...|++++|+..+-.++.
T Consensus 71 ------------~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 ------------DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ------------ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011344455566666666666666666655543
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=5.2e-08 Score=77.31 Aligned_cols=176 Identities=18% Similarity=0.086 Sum_probs=126.5
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
++...||..|+.+++-....+... ......+|.|+++.|+|++|+..|.-+...+..+. .++..++-+++-.|.|.+
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHHH
Confidence 567789999999998887665333 36677899999999999999999998877543334 789999999999999999
Q ss_pred HHHHHHHHHhccchhh--hhc----CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 108 QIELLKQKLRMIYHGE--AFN----GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 108 A~~~~~~al~~~~~~~--~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
|...-.++-+. |... .++ -...+....+-.. + .+..+-...++.+++..-.|.+|++.|++.+..+|+
T Consensus 110 A~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~--L---qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 110 AKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSS--L---QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHH--H---hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 99876665432 1100 000 0011111111111 0 112344566788888888999999999999998888
Q ss_pred chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 ~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..... +++.||.++.-++-+.+.+.--++..
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF 215 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC
Confidence 76664 89999999999998888887777663
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=2.8e-08 Score=79.67 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
....|.++...|++++|++.+.+. ...+.......++...++++.|.+.++.+.+.+.+.....+...+..++..
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhC
Confidence 344555555566666666655432 344555555666666666666666666665555554322222222222222
Q ss_pred cCCHHHHHHHHHHHHhccchh------h--hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHH
Q 023081 102 CGRLDEQIELLKQKLRMIYHG------E--AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-TSAEVV 171 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~------~--~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~ 171 (287)
.+.+.+|...|+......+.. . +. ....++.|...+.. ++..+|+++.++.+++.+....|+. +.+.++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~-al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE-ALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH-HCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 234666666666655544311 1 11 13345555555555 5667777999999999999999998 556678
Q ss_pred HHHHHhhCCCchHHH
Q 023081 172 YRKAQLIDPDANKAC 186 (287)
Q Consensus 172 ~~~al~~~~~~~~~~ 186 (287)
+.+....+|+++..-
T Consensus 259 l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 259 LSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHCHHHTTTSHHHH
T ss_pred HHHHHHhCCCChHHH
Confidence 888777889887553
No 162
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.92 E-value=2.5e-08 Score=76.79 Aligned_cols=102 Identities=16% Similarity=-0.006 Sum_probs=93.8
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVL 95 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l 95 (287)
.-.|..|.-++..|+|..|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+++.. .....+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 347999999999999999999999999998876 7899999999999999999999999999999876432 678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|.+....|+.++|...|+++++.+|.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999995
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.91 E-value=1.1e-08 Score=64.36 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=58.8
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+..++...+++++|+..+++++..+|+++..+..+|.++...|++.+|+..++++++..|+++
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 357889999999999999999999999999999999999999999999999999999999776
No 164
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=2.8e-07 Score=84.58 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=140.6
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDR----VDSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
+.+|+.+++...|++.-.|+.--..++..++.++|.+.+++|+. +++. ....|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 34577789999999999999888888899999999999999996 3333 245566666666666777788889999
Q ss_pred HHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch-hhhh-------cCC-ChhHHHHHHHHHhhhcCCC--
Q 023081 79 FRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH-GEAF-------NGK-PTKTARSHGKKFQVTVKQE-- 147 (287)
Q Consensus 79 ~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~-------~~~-~~~~a~~~~~~~~~~~~~~-- 147 (287)
+.+.+... .++..|..+|...+.+++|.++++.+++.... -..| ... ..+++...+.+ ++..-|.
T Consensus 1523 Acqycd~~---~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~r-AL~~lPk~e 1598 (1710)
T KOG1070|consen 1523 ACQYCDAY---TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKR-ALKSLPKQE 1598 (1710)
T ss_pred HHHhcchH---HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHH-HHhhcchhh
Confidence 98876543 47888999999999999999999999987652 1111 111 12334444444 4444444
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.......|.+-++.|+.+.+...|+..+...|...+.| -+...-.+.|+.+.....|++++..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 455555566666666666666666666666666665555 3555556666666666666666655
No 165
>PRK11906 transcriptional regulator; Provisional
Probab=98.90 E-value=1.2e-07 Score=78.49 Aligned_cols=112 Identities=9% Similarity=-0.035 Sum_probs=101.4
Q ss_pred hhhHh---hcCCCCchHHHHhHHhHHhh---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 8 PYHVV---HKLPPGDSPYVRAKHVQLVE---------KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 8 ~~~~l---~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 75 (287)
+.+++ ..+|+.+.+|-.++.+++.. .+..+|.+..+++++++|.++.++..+|.+....|+++.|...
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~ 360 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL 360 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHH
Confidence 34577 88899999999999888764 3466789999999999999999999999999999999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 76 IKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 76 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|++++.++|+.+ ..++..|.+....|+.++|.+.++++++++|.
T Consensus 361 f~rA~~L~Pn~A--~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 361 FEQAKIHSTDIA--SLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHhhcCCccH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 999999999998 78888999999999999999999999999984
No 166
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.87 E-value=1.1e-07 Score=66.52 Aligned_cols=104 Identities=15% Similarity=0.040 Sum_probs=87.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~ 93 (287)
.+..++..|...+..|+|.+|++.|+......|.. ..+...++.+|+..|++++|+..+++.++++|.++.. -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45778999999999999999999999988876654 6889999999999999999999999999999977411 3567
Q ss_pred HHHHHHHHcCC---------------HHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGR---------------LDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~---------------~~~A~~~~~~al~~~~~ 121 (287)
..|.++..+.. ...|...|++.+...|+
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 77777777765 67778888888877774
No 167
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.85 E-value=1.1e-07 Score=73.31 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++.|.-++..|+|..|...|...++..|+.. ..+++++||.+++.+|+|++|...|..+.+..|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 34444444444555555555555555444331 113344444444444444444444444444433
No 168
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.80 E-value=2e-08 Score=64.08 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh-cCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT-VKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.++..+|.+|...|++++|+.+|++++++... .. ..|....++.++|.++...|++++|
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~a~~~~~lg~~~~~~g~~~~A 65 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------LGDDHPDTANTLNNLGECYYRLGDYEEA 65 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------TTTHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------HCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 67888999999999999999999999987221 11 1122477899999999999999999
Q ss_pred HHHHHHHHhh
Q 023081 169 EVVYRKAQLI 178 (287)
Q Consensus 169 ~~~~~~al~~ 178 (287)
++++++++++
T Consensus 66 ~~~~~~al~i 75 (78)
T PF13424_consen 66 LEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 169
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.9e-07 Score=75.79 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=120.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.++.--..+...++|++|+....+.+...|++..+...-..++.+.+.|++|+...+.-......+ ...+..+.|.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHH
Confidence 444445566788999999999999999999999999999999999999999995554432222222 23367788999
Q ss_pred HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID- 179 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 179 (287)
+.+..++|+..++. + ++ .+..+....|.++++.|+|++|+..|+..++.+
T Consensus 91 rlnk~Dealk~~~~-~--~~--------------------------~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-L--DR--------------------------LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HcccHHHHHHHHhc-c--cc--------------------------cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 99999999999882 2 11 144566667888888888888888888765422
Q ss_pred -----------------------------CCc--hHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 180 -----------------------------PDA--NKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 180 -----------------------------~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.+ ...+|.+.++...|++.+|++.++.++.+.
T Consensus 142 dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 142 DDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 211 123489999999999999999999995543
No 170
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.79 E-value=3.5e-08 Score=81.52 Aligned_cols=70 Identities=11% Similarity=0.037 Sum_probs=66.2
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS---ALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
.+|+++.+++++|.++...|++++|+..|+++++++|++.. +|+++|.+|..+|++++|+..++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999975 49999999999999999999999999973
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.77 E-value=9.4e-07 Score=64.05 Aligned_cols=138 Identities=8% Similarity=-0.008 Sum_probs=115.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+...|+. .-.+.+|......|++.+|...|++++. ....++..+..++.+.+..+++..|...+++..+.+|......
T Consensus 83 ~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 4445543 3457899999999999999999999986 4467788999999999999999999999999999988432224
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
....++..+...|.+..|...|+.++...| .+......+..+.++|+.++|..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~yp---------------------------g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYP---------------------------GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCC---------------------------CHHHHHHHHHHHHHhcchhHHHH
Confidence 566788899999999999999999999988 47777788999999999998887
Q ss_pred HHHHHHh
Q 023081 171 VYRKAQL 177 (287)
Q Consensus 171 ~~~~al~ 177 (287)
.+....+
T Consensus 215 q~~~v~d 221 (251)
T COG4700 215 QYVAVVD 221 (251)
T ss_pred HHHHHHH
Confidence 7766654
No 172
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.77 E-value=5e-07 Score=63.17 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++.-|......|+|++|++.|+.+....|...+ ..+...++.+|+..+++++|+..+++-+++.|.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~--------- 79 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT--------- 79 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Confidence 3577899999999999999999999999999985431 246888999999999999999999999999884
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCc
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN---------------YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~~~~ 182 (287)
+|+-..+++..|.++..+.. ..+|...|++.+...|++
T Consensus 80 --------------hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 80 --------------HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred --------------CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 34457888999998888766 555666666666655554
No 173
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.76 E-value=5.5e-06 Score=70.89 Aligned_cols=190 Identities=12% Similarity=0.160 Sum_probs=135.9
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHh-cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN-AGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
++..+|++...|.. ++-+..|+..+-+..|.+|+. .+|.. ...|..+|..|...|+.+.|...|+++....-
T Consensus 341 lLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 56778988888866 455667899999999999985 45543 45788999999999999999999999988743
Q ss_pred hh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-h-hcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 85 KQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE-A-FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 85 ~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
.. ....+|...|.+-....+++.|..+.+.+...-.... . |.+...-++. ..+ +..+|..++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r-lhr---------SlkiWs~y~DleE 488 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR-LHR---------SLKIWSMYADLEE 488 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH-HHH---------hHHHHHHHHHHHH
Confidence 21 2336888899999999999999999999887532211 1 1111111111 111 4566777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|-++.....|.+.+.+.--.|... |.|..+....-++++.+.|++.+.+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 77777777777777777666555553 77777777777777777777777764
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.76 E-value=4.4e-08 Score=60.70 Aligned_cols=61 Identities=30% Similarity=0.362 Sum_probs=44.0
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..|++++..+|. +..++..+|.+|...|++++|...+++++..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------------------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------------------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567777777777776666554 67777778888888888888888888877777
Q ss_pred CCchHHH
Q 023081 180 PDANKAC 186 (287)
Q Consensus 180 ~~~~~~~ 186 (287)
|+++.++
T Consensus 56 ~~~~~~~ 62 (68)
T PF14559_consen 56 PDNPEYQ 62 (68)
T ss_dssp TTHHHHH
T ss_pred cCHHHHH
Confidence 7765554
No 175
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.74 E-value=6.5e-08 Score=79.95 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=64.9
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH----HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
-..+|+++..|+++|.+|...|+|++|+..|+++++++|++..+ +++|.+|..+|+.++|+..++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999753 49999999999999999999999986
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=5.8e-08 Score=61.97 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----hhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC----SKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
+...++.++|.+|...|++++|+.+|++++++. ++++ ....+..+|.++...|++++|++++++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 345677888888888888888888888887652 1222 23567788888888888888888888887763
No 177
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.9e-07 Score=66.73 Aligned_cols=104 Identities=18% Similarity=0.158 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+..-|.-++..|+|++|..-|..++.+.|.. ....++...|.++.+++.++.|+....+++++.|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt---------- 166 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT---------- 166 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch----------
Confidence 34456777888889999999999999888843 23346777788888888899999888888888774
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 184 (287)
+..++...+.+|.++.+|++|++.|++.++.+|....
T Consensus 167 ----------------y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 167 ----------------YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred ----------------hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 4556667888888888899999999999888887643
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.72 E-value=8.7e-08 Score=60.26 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=42.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
..+|...+++++|++++++++..+|. ++..|...|.++...|++.+|...|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD--------------------------DPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc--------------------------cchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 34566667777777777766655543 5666777777777777777777777777
Q ss_pred HhhCCCchHH
Q 023081 176 QLIDPDANKA 185 (287)
Q Consensus 176 l~~~~~~~~~ 185 (287)
++..|+++..
T Consensus 56 l~~~p~~~~~ 65 (73)
T PF13371_consen 56 LELSPDDPDA 65 (73)
T ss_pred HHHCCCcHHH
Confidence 7777766544
No 179
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.72 E-value=2e-06 Score=58.55 Aligned_cols=98 Identities=18% Similarity=0.089 Sum_probs=84.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHHHHHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQESLDNVLIDLYK 100 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~l~~~~~ 100 (287)
-..|......|+.+.|++.|.+++.+.|..+.++.+.+.++.-+|+.++|++-+++++++..+. .....+...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456666778999999999999999999999999999999999999999999999999986532 12245777899999
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
..|+-+.|..-|+.+-++..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 99999999999999988754
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.70 E-value=1e-05 Score=62.13 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE-SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.+..++.-|....+.|++++|+..|+.+...+|..++. .+...++..+.+.++++.|+...++-+.+.|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~--------- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT--------- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---------
Confidence 46789999999999999999999999999999965432 46778899999999999999999999999884
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCch---------------HH--
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG--------NYTSAEVVYRKAQLIDPDAN---------------KA-- 185 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~---------------~~-- 185 (287)
+|+-..+++..|.++...= -..+|...|++.+...|+.. .+
T Consensus 104 --------------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 104 --------------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred --------------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 3445667777887765432 23678888889999888753 01
Q ss_pred -HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 186 -CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 186 -~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
..+|..|.+.|.+-.|+..++.+++.++..+.....+.+..+....++-.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~ 220 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLT 220 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCCh
Confidence 15789999999999999999999998755555566667777777666643
No 181
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=5.1e-06 Score=78.09 Aligned_cols=173 Identities=13% Similarity=0.023 Sum_probs=130.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQESL 91 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~ 91 (287)
....+|.++...|++++|...+++++...+.. ..+...+|.++...|++++|...+++++...... .....
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34556788889999999999999998854432 2356778999999999999999999998764421 12235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
...++.++...|++++|...+++++...... .....+....++..+|.++...|++++|...
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQ------------------HLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh------------------ccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6778999999999999999999998864310 0000011233456789999999999999999
Q ss_pred HHHHHhhCCCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+++...... ...+ .++.++...|++++|...+.++...
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99998753321 1222 6899999999999999999998765
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.65 E-value=1.7e-05 Score=61.41 Aligned_cols=199 Identities=25% Similarity=0.280 Sum_probs=144.8
Q ss_pred HhhcCCC--CchHHHHhHHhHHhhCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 11 VVHKLPP--GDSPYVRAKHVQLVEKDPEAAIVLFWKAIN--AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 11 ~l~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+...+. ........+..+...+++..+...+...+. ..+.....+...+..+...+++..++..+..++...+..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (291)
T COG0457 49 ALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP 128 (291)
T ss_pred HHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc
Confidence 3444444 367778888888888999999999888886 667777888888999999999999999999988876654
Q ss_pred hHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccch----hhhh--c------CCChhHHHHHHHHHhhhcCCC-cHHHH
Q 023081 87 AQESLDNVLID-LYKKCGRLDEQIELLKQKLRMIYH----GEAF--N------GKPTKTARSHGKKFQVTVKQE-TSRIL 152 (287)
Q Consensus 87 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~----~~~~--~------~~~~~~a~~~~~~~~~~~~~~-~~~~~ 152 (287)
. ......+. ++...|+++.|...+.+++...+. .... . ......+...+.. .+...+. ....+
T Consensus 129 ~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~ 205 (291)
T COG0457 129 D--LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK-ALKLNPDDDAEAL 205 (291)
T ss_pred c--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH-HHhhCcccchHHH
Confidence 3 23333333 788889999999999998775541 1111 0 1134445555444 4556666 57888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++..+...+++.+|...+..++...|..... ..++..+...+..+++...+.+++...
T Consensus 206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888988889999999999998888874333 366666667777888888888888764
No 183
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.2e-06 Score=62.92 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=87.7
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+-.-|.-++..|+|++|..-|..|+..-|.. .-.+.+.|.++.+++.++.|+.-+.++++++|.+. .+....
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RR 174 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERR 174 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHH
Confidence 34456788899999999999999999998875 33567889999999999999999999999999876 677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+.+|.+...|++|+.-|.+.++.+|.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999994
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.59 E-value=6.7e-06 Score=77.27 Aligned_cols=174 Identities=14% Similarity=-0.031 Sum_probs=125.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-- 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-- 87 (287)
+......+.++...|++++|...+..+....+. .......++.++...|++++|...+++++...|...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 445566778888889999999988887653221 123445577888889999999999999887544221
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 88 -QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 88 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.......++.++...|++++|...+++++..... .........++..+|.++...|+++
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~--------------------~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ--------------------HDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--------------------hcchHHHHHHHHHHHHHHHHCCCHH
Confidence 1234567788888899999999999988876331 0000002346678999999999999
Q ss_pred HHHHHHHHHHhhCCCc-----h-H--H-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDA-----N-K--A-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~-----~-~--~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...+.+++...... . . . ..+|.++...|++++|...+++++...
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 9999999998753221 1 1 1 267889999999999999999988763
No 185
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=5.8e-06 Score=61.53 Aligned_cols=186 Identities=13% Similarity=0.016 Sum_probs=127.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
+..++..|..|-..|-+.-|.--|.+++.+.|+.+.++..+|.-+...|+++.|.+.|...++++|... -+..+.|..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lNRgi~ 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNRGIA 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhcccee
Confidence 456788899999999999999999999999999999999999999999999999999999999999775 344455556
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhh---h---c--CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEA---F---N--GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~---~---~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
+.--|++.-|.+-+.+-.+.+|..+- | + ....+.|...+..-+...+. .-..|+..+ +-.|+..+ ..
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~-e~WG~~iV~---~yLgkiS~-e~ 217 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDK-EQWGWNIVE---FYLGKISE-ET 217 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccH-hhhhHHHHH---HHHhhccH-HH
Confidence 66669999999999988888775331 1 1 11233333322211111111 111122211 12233221 23
Q ss_pred HHHHHHhhCCCch-------HH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 171 VYRKAQLIDPDAN-------KA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 171 ~~~~al~~~~~~~-------~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.++++.....++. .. +.||.-+...|+.++|...|+-++..
T Consensus 218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3444444333332 12 27899999999999999999999875
No 186
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=2.4e-06 Score=66.58 Aligned_cols=164 Identities=11% Similarity=-0.026 Sum_probs=107.8
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
.+..|.+-..+-.+|.+|+...++..|.++|++.-...|.........|..+++.+.+..|+.+....... |. .....
T Consensus 37 ~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-~~-L~~~~ 114 (459)
T KOG4340|consen 37 LERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-PA-LHSRV 114 (459)
T ss_pred HhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-HH-HHHHH
Confidence 35678888889999999999999999999999999999998888888899999999999998877665442 21 11122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhh------hcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEA------FNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...-+.+....+++..+..+.++.-.-+. .+.. |.....+.+..-+.. +++..--.+-+-++++.++++.|+
T Consensus 115 lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa-AlqvsGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 115 LQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA-ALQVSGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred HHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH-HHhhcCCCchhHHHHHHHHHhhhh
Confidence 22333344444555554444443321111 0000 001112222222221 333333467888999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 023081 165 YTSAEVVYRKAQLI 178 (287)
Q Consensus 165 ~~~A~~~~~~al~~ 178 (287)
++.|+++..+.++.
T Consensus 194 yasALk~iSEIieR 207 (459)
T KOG4340|consen 194 YASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888763
No 187
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.56 E-value=2.2e-07 Score=73.57 Aligned_cols=186 Identities=11% Similarity=-0.038 Sum_probs=127.8
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
.-..|.-|+.+|.|++||++|.+++..+|.++..+.+.|.+|++...+..|..-+..++.++.... .+|...+..-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999887665 788888888889
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHH-HhhhcCCCcHHH---------HHHHHHHHHHcCCHHHHHHH
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKK-FQVTVKQETSRI---------LGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~---------~~~lg~~~~~~g~~~~A~~~ 171 (287)
.|...+|.+-++.++++.|....+... +....+..++ ......|....+ .-.-|..+...|.++.++..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~-~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~ 256 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKS-LARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVD 256 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHH-HHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeE
Confidence 999999999999999999853322100 0000000000 011111111111 12346666777777777777
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+-+-+....++...- + +..+.+.-++++|+.--.+++..
T Consensus 257 ~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~ 296 (536)
T KOG4648|consen 257 VVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNP 296 (536)
T ss_pred eeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCC
Confidence 766555443333322 3 55666666666766555555443
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.56 E-value=2.4e-06 Score=58.21 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARS 135 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~ 135 (287)
+-.-|..+...|+.+.|++.|.+++.+.|..+ .++++.++.+.-+|+.++|++-+++++++... ....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~----------~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGD----------QTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCc----------cchH
Confidence 34567778888999999999999999999888 78999999999999999999999999887542 0000
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 136 HGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
-..++...|.+|...|+-+.|...|..+-++...+.
T Consensus 114 ------------acqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 114 ------------ACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred ------------HHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 244577788999999999999999998888776653
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=2.1e-05 Score=60.32 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+.+.++.++.-.|+|.-++..+.+.++.+| ..+ .+...++.+..+.|+.+.|..+|+.+-+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~------------ 243 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ------------ 243 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHh------------
Confidence 4566788888899999999999999999985 445 6788899999999999999999997765433
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+..-.....+..+.+.+|.-.+++..|...|.+++..+|.++.+. +-+.|+.-+|+..+|++.++.++..
T Consensus 244 --------kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 244 --------KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred --------hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222233566778889999999999999999999999999998886 8899999999999999999999987
Q ss_pred c
Q 023081 212 K 212 (287)
Q Consensus 212 ~ 212 (287)
.
T Consensus 316 ~ 316 (366)
T KOG2796|consen 316 D 316 (366)
T ss_pred C
Confidence 4
No 190
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.53 E-value=1.1e-05 Score=67.25 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=109.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------------------------CHHHHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------------------------VDSALKDMAVVLK 64 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------------------------~~~~~~~la~~~~ 64 (287)
++++.+|+.+++|..++.-. .....+|.++|+++++.+.. .+.+...+|.|..
T Consensus 193 eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCar 270 (539)
T PF04184_consen 193 EALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCAR 270 (539)
T ss_pred HHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHH
Confidence 46777777777777766532 22355666666666543211 0233446777777
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV 144 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 144 (287)
+.|+.++|++.++..++..|......+...+..++...+.|.++...+.+--++.
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~------------------------- 325 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS------------------------- 325 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-------------------------
Confidence 7777777777777777776643323567777777777777777777766632221
Q ss_pred CCCcHHHHHHHHHHHHH-------------cCC---HHHHHHHHHHHHhhCCCchHHH----HHH---HHHHhccCHHHH
Q 023081 145 KQETSRILGNLGWAYMQ-------------KGN---YTSAEVVYRKAQLIDPDANKAC----NLS---HCLIKQARYTEA 201 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~-------------~g~---~~~A~~~~~~al~~~~~~~~~~----~l~---~~~~~~g~~~~A 201 (287)
-|+++.+.+.-+.+-.+ .|- -..|.+.+.+|++.+|.-+.+. .|. .-..+.|+ .||
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 12233444433333222 110 1347789999999999887664 221 22345665 788
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHH
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKELLQ 230 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 230 (287)
+.+---.+ .+|+...-|.++|.
T Consensus 405 iaYAf~hL-------~hWk~veGAL~lL~ 426 (539)
T PF04184_consen 405 IAYAFFHL-------QHWKRVEGALNLLH 426 (539)
T ss_pred HHHHHHHH-------HHHhcCHhHHHHHH
Confidence 87766666 35555455555554
No 191
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.52 E-value=3.6e-06 Score=67.32 Aligned_cols=178 Identities=9% Similarity=-0.026 Sum_probs=128.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--h--HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--A--QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~--~~ 89 (287)
.+++.++++.+...-++.+++.+-...+..-.. ..++...+|.++.-.+.++++++.|++++....++ + ..
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 356777888877777888888777666554321 23567778899999999999999999998875432 2 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|....++++|.-+..++.++...- ..++....+ ..-+++.++..+..+|+.-.|.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~------~l~d~~~ky----------r~~~lyhmaValR~~G~LgdA~ 226 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY------GLKDWSLKY----------RAMSLYHMAVALRLLGRLGDAM 226 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc------CcCchhHHH----------HHHHHHHHHHHHHHhcccccHH
Confidence 457788899999999999999988888774310 000000000 2456788999999999999999
Q ss_pred HHHHHHHhhCCC--c-hHH----HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPD--A-NKA----CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~--~-~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.+++.++.-. + +.. ..+|.+|...|+.+.|..-|+++....
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 999998775432 2 211 168999999999999999999988753
No 192
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=7.9e-06 Score=65.28 Aligned_cols=138 Identities=17% Similarity=0.067 Sum_probs=99.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh------------
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA------------ 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------------ 87 (287)
+.-.-+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+||.+++..|.|.+|.....++ |+++
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHH
Confidence 455678999999999999999998888766666789999999999999999998877664 2221
Q ss_pred ------HH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 88 ------QE----------SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 88 ------~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+. +-...++.+.+..-.|++|++.|.+++.- +|+....
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--------------------------n~ey~al 187 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--------------------------NPEYIAL 187 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--------------------------Chhhhhh
Confidence 00 11223344444444555555555555444 4445566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 187 (287)
...++.||+++.-|+-+-+.++-.++..|+.+.+.+
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 677888888888888888888888888888876653
No 193
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.51 E-value=4.8e-05 Score=58.79 Aligned_cols=192 Identities=23% Similarity=0.200 Sum_probs=146.5
Q ss_pred CchHHHHhHHhHHh-hCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hchhhhHHHHH
Q 023081 18 GDSPYVRAKHVQLV-EKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRH--LCSKQAQESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~ 92 (287)
........+..... .+.+..+...+...+...+. ........+..+...+.+..+...+..... ..+... ..+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 98 (291)
T COG0457 21 EALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA--EAL 98 (291)
T ss_pred hHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH--HHH
Confidence 33333444444343 57888999999999988876 378899999999999999999999999987 455544 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchh--------h-hh-cCCChhHHHHHHHHHhhhcCC---CcHHHHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------E-AF-NGKPTKTARSHGKKFQVTVKQ---ETSRILGNLGWAY 159 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~-~~-~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~lg~~~ 159 (287)
...+..+...+++..++..+..++...+.. . .+ .......+...+.+ ++...| .........+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 177 (291)
T COG0457 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK-ALELDPELNELAEALLALGALL 177 (291)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCccchHHHHHHhhhHH
Confidence 888889999999999999999999866532 1 12 33455666666665 345555 3556666677778
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPD-ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...+++..|+..+.+++...+. ....+ .++.++...+++..|...+..++...
T Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888999999999999998888 45554 88888988999999999999988874
No 194
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.51 E-value=1.9e-06 Score=62.35 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcC
Q 023081 69 VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC---GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 69 ~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (287)
++.|.+.++.....+|.++ ..+...|..+... ....++.++++.++..... ++.++
T Consensus 7 FE~ark~aea~y~~nP~Da--dnL~~WG~ALLELAqfk~g~es~~miedAisK~ee-------------------AL~I~ 65 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA--DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEE-------------------ALKIN 65 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH-------------------HHHH-
T ss_pred HHHHHHHHHHHHHhCcHhH--HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH-------------------HHhcC
Confidence 4566677777777777665 4444444444443 3334566666666554432 67777
Q ss_pred CCcHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCchHHH
Q 023081 146 QETSRILGNLGWAYMQKGN-----------YTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|+...+++.+|.+|...+. |++|..+|+++...+|++..+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 7789999999999987654 6788888999999999987665
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.49 E-value=4.8e-07 Score=71.67 Aligned_cols=96 Identities=21% Similarity=0.151 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
-..|+-|+++|.|++|+++|.+++..+|. ++..+.+.+.+|++...|..|...+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~--------------------------NpV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH--------------------------NPVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC--------------------------CccchhhHHHHHHHHHHHHHHHHhH
Confidence 45688999999999999999999888775 7888889999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccC
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 214 (287)
..++.++.....++ ..+.+-..+|...+|.+-++.++++.+.
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 99999988887777 7788888999999999999999988544
No 196
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=9.7e-05 Score=55.78 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=118.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG----DR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ---- 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 88 (287)
.+.+...|..|-..++|+.|=..|.++-... .. ....+...+.+|.+ ++.++|+.++++++++..+-..
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4566777888888888888888887775432 21 23445555555544 4999999999999998775431
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 89 ESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 89 ~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
......+|.+|... .++++|+.+|+++-+.+.... ... ..-..+...+..-...++|.+
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~s-----------sANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVS-----------SANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhh-----------hHHHHHHHHHHHHHHHHHHHH
Confidence 12355788888765 889999999998877654200 000 012335556677778899999
Q ss_pred HHHHHHHHHhhCCCchHH-H-------HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKA-C-------NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-~-------~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..|++.....-+++.. | .-|.|+.-..+.-.+...+++-.+..
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 999999988766665432 2 45777777777777777777777764
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=0.00035 Score=62.38 Aligned_cols=210 Identities=15% Similarity=0.045 Sum_probs=142.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.-+++++.|+...+...-|....+.|..++|..+++..-...+++...+..+-.+|...|++++|...|++++..+|..
T Consensus 31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcH
Confidence 44568899999999999999999999999999988877666677777888899999999999999999999999999983
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c------------------CCChhHHHHHHHHHhhhcC-C
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N------------------GKPTKTARSHGKKFQVTVK-Q 146 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~------------------~~~~~~a~~~~~~~~~~~~-~ 146 (287)
.....+-.+|.+.+.|.+-.+.--+..+..|...-| + +....-|....+. .+... +
T Consensus 111 ---ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~-~l~~~gk 186 (932)
T KOG2053|consen 111 ---ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK-LLEKKGK 186 (932)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH-HhccCCc
Confidence 455555556677777766555544455555521111 0 1112233344443 22222 2
Q ss_pred Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhH
Q 023081 147 ET--SRILGNLGWAYMQKGNYTSAEVVYRKA-QLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKT 221 (287)
Q Consensus 147 ~~--~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 221 (287)
-. .++. ..-.++..+|++++|+..+..- .+..+..+... .-...+..++++.+-.+...+++.. ++++++.
T Consensus 187 ~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k---~~Ddy~~ 262 (932)
T KOG2053|consen 187 IESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK---GNDDYKI 262 (932)
T ss_pred cchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh---CCcchHH
Confidence 11 2222 2234567889999999999433 33333333332 4567778899999999999999987 4454544
Q ss_pred HHH
Q 023081 222 INR 224 (287)
Q Consensus 222 ~~~ 224 (287)
+..
T Consensus 263 ~~~ 265 (932)
T KOG2053|consen 263 YTD 265 (932)
T ss_pred HHH
Confidence 333
No 198
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.6e-06 Score=65.29 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=87.9
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
+-.-|..++....|..|+..|.++|..+|..+..+.+.+.++.+..+++.+..-..+++++.|+.+ ...+.+|.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHHHHHh
Confidence 344567778888999999999999999999999999999999999999999999999999999987 778889999999
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 023081 102 CGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (287)
...|++|+..+.++..+.
T Consensus 91 s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hccccHHHHHHHHHHHHH
Confidence 999999999999997764
No 199
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.40 E-value=2e-05 Score=63.19 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=124.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh------
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ------ 86 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------ 86 (287)
......+|.++...+.++++++.|+.|++...++ .++...||..|.+..++++|+-+..++.++....
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 3556678999999999999999999999875332 4678899999999999999999999998774311
Q ss_pred --hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 87 --AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 87 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
...-..+.++..+..+|+...|.++.+++.++.- . ....+-......-+|.+|...|+
T Consensus 202 ~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal--------------~------~Gdra~~arc~~~~aDIyR~~gd 261 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL--------------Q------HGDRALQARCLLCFADIYRSRGD 261 (518)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH--------------H------hCChHHHHHHHHHHHHHHHhccc
Confidence 0113466788889999999999999999988732 0 00112245667789999999999
Q ss_pred HHHHHHHHHHHHhhCCCch----HH--H-HHHHHHHhccCHH-----HHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDAN----KA--C-NLSHCLIKQARYT-----EARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~----~~--~-~l~~~~~~~g~~~-----~A~~~~~~~l~~ 211 (287)
.+.|..-|+++......-. .. . ..+.++....-.. .|+++-.++++.
T Consensus 262 ~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~lev 320 (518)
T KOG1941|consen 262 LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEV 320 (518)
T ss_pred HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 9999999999987543321 11 1 4555554333222 266655555544
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.39 E-value=1.1e-06 Score=49.00 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=27.1
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAV 61 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~ 61 (287)
.+++.+|..+...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455666666666666666666666666666666666666553
No 201
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.38 E-value=4.4e-05 Score=61.33 Aligned_cols=139 Identities=12% Similarity=0.086 Sum_probs=109.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ-QDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
+|....+.....+..+.|...|.++.+..+-...+|...|.+-+. .++.+.|..+|+.+++..|.+. .++....+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHH
Confidence 456666777777779999999999997666667899999999777 5666779999999999999887 7888888899
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...++.+.|..+|++++...+... ....+|......-...|+.+......+++.+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~-----------------------~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEK-----------------------QSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHH-----------------------HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchh-----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998755200 024567777888888999999999999999988
Q ss_pred CCchH
Q 023081 180 PDANK 184 (287)
Q Consensus 180 ~~~~~ 184 (287)
|+...
T Consensus 138 ~~~~~ 142 (280)
T PF05843_consen 138 PEDNS 142 (280)
T ss_dssp TTS-H
T ss_pred hhhhH
Confidence 87543
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.35 E-value=1.4e-06 Score=48.57 Aligned_cols=42 Identities=31% Similarity=0.389 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
|.++..+|.+|...|++++|+..|+++++.+|+++.++ .+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 45788999999999999999999999999999999887 6664
No 203
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00012 Score=55.64 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=115.6
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~ 89 (287)
.+.|...+..|...+++++|-.++.++++-..++ +.++-..|.+......+.++..+++++..+.-.+. ..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4667788888889999999999999998655444 23445566777777888999999999877643221 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
......+--..+.-++++|+.+|++++.+...+. ..+. -.+.+...+.++.+..+|++|-
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~d-----r~~m---------------a~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDD-----RDQM---------------AFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-----hHHH---------------HHHHHHHhhhHhhhhHHhhHHH
Confidence 1222223334566788889999888887644211 0111 1334555778888888888888
Q ss_pred HHHHHHHhhCCC---chHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc-cCCCCchhH
Q 023081 170 VVYRKAQLIDPD---ANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK-LSGSTETKT 221 (287)
Q Consensus 170 ~~~~~al~~~~~---~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~ 221 (287)
..+.+-...... .+.. + ....++.-..++..|...++..-+.. ..++.+..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 777764332111 1111 1 33444555668888888888877664 333444433
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.32 E-value=5.8e-06 Score=59.89 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
++.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++++.++|+.. .++..+|..|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHh
Confidence 4566666766677777777777776666655532 4556666666677777654 455555555554332
Q ss_pred -----------HHHHHHHHHHHHhccch
Q 023081 105 -----------LDEQIELLKQKLRMIYH 121 (287)
Q Consensus 105 -----------~~~A~~~~~~al~~~~~ 121 (287)
|++|..+|+++...+|.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44444455555555543
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.32 E-value=9.9e-05 Score=63.65 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=116.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHH--------HHHH----HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMA--------VVLK----QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la--------~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.||-+.+++.+.++.+. ++.-.....+. ..+. .....+.|.+.+.......|+.+ -.....|.++
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~gR~~ 277 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFEGRLE 277 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 68999999999998773 33211111111 1111 24567889999999999999987 4566778899
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|+.++|++.|++++..... .+.+ ..-.++.+|+++..+++|++|..+|.+..+.+
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~---------------~~Ql-------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSE---------------WKQL-------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhh---------------HHhH-------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 9999999999999998854221 1111 35668899999999999999999999999876
Q ss_pred CCchHHH--HHHHHHHhccCH-------HHHHHHHHHHHhcc
Q 023081 180 PDANKAC--NLSHCLIKQARY-------TEARSVLEDVLLGK 212 (287)
Q Consensus 180 ~~~~~~~--~l~~~~~~~g~~-------~~A~~~~~~~l~~~ 212 (287)
.-....+ ..|.|+...|+. ++|..+|.++-...
T Consensus 336 ~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 336 KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6655544 688999999999 88888888877654
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.1e-05 Score=60.35 Aligned_cols=136 Identities=13% Similarity=0.049 Sum_probs=113.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESLDNVL 95 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~~l 95 (287)
..+.+..++...|.|.-.++.+.+.++.+ |..+.....||.+-++.|+.+.|..+|++.-+.... ..-.-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667778888899999999999999988 667888999999999999999999999976543221 1111356677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.+|.-++++.+|...|.+.+..++. ++.+.++.|.|..-.|+..+|++....+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~--------------------------~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR--------------------------NAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC--------------------------chhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999988877664 7888899999999999999999999999
Q ss_pred HhhCCCc
Q 023081 176 QLIDPDA 182 (287)
Q Consensus 176 l~~~~~~ 182 (287)
+...|..
T Consensus 313 ~~~~P~~ 319 (366)
T KOG2796|consen 313 VQQDPRH 319 (366)
T ss_pred hccCCcc
Confidence 9999986
No 207
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=0.00014 Score=67.76 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=93.0
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
..-|.-+...+.|++|.+..... .++..|..+|...+.+++|.++++..++...+.. ..|..++..++.+.+-++|.
T Consensus 1508 n~yG~eesl~kVFeRAcqycd~~-~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1508 NAYGTEESLKKVFERACQYCDAY-TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HhhCcHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHH
Confidence 33445555556666665544322 4566666666666666666666666666555333 46666666666666666666
Q ss_pred HHHHHHHhccchhh-----------hhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYHGE-----------AFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~~~-----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
..+.+|++.-|... .|.....+.....++. .+...|.-.++|.-+...-.+.|+.+.+...|++++.+
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg-ll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG-LLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH-HHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 66666666655200 0111123334444444 45556668899999999999999999999999999886
Q ss_pred CC
Q 023081 179 DP 180 (287)
Q Consensus 179 ~~ 180 (287)
.-
T Consensus 1664 ~l 1665 (1710)
T KOG1070|consen 1664 KL 1665 (1710)
T ss_pred CC
Confidence 53
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.28 E-value=9.9e-07 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 73 (287)
|+++|+.+|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777877777777777775
No 209
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.27 E-value=0.00021 Score=61.68 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=118.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-------h
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-DR---VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK-------Q 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~ 86 (287)
....|...|..|...|+.+.|...|+++.... +. -..+|..-|..-....+++.|+.+.+++...-.+ +
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 34678899999999999999999999999876 22 2678999999999999999999999998754211 0
Q ss_pred ---h------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--h------h-cCCChhHHHHHHHHHhhh--cCC
Q 023081 87 ---A------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--A------F-NGKPTKTARSHGKKFQVT--VKQ 146 (287)
Q Consensus 87 ---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~------~-~~~~~~~a~~~~~~~~~~--~~~ 146 (287)
+ ...+|..++++-...|-++.....|++.+.+.-..+ + + ....+..+-..+++ .+. ..|
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr-gI~LFk~p 544 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER-GISLFKWP 544 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc-CCccCCCc
Confidence 0 124677788888888999999999999988643100 0 0 11122222222222 222 223
Q ss_pred CcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhhCCCc-hHHH--HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWA---YMQKGNYTSAEVVYRKAQLIDPDA-NKAC--NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~~~~-~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+-.++|+..-.. -+..-..+.|...|+++++..|.. .... ..+..-..-|--..|+.+|+++-..
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 334444332211 222335566666666666655422 1111 3344444455566666666665543
No 210
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.00016 Score=56.73 Aligned_cols=161 Identities=15% Similarity=0.043 Sum_probs=101.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
.+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...=....+.. +..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~----~~~---- 205 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA----AHG---- 205 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH----HHH----
Confidence 344556666677778888888888888888888888888888888888888887776655322222211 110
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
....++.+.++-...+ .....+ .+..+|++..+-+.+|..+...|+.+.|++.+-..+..
T Consensus 206 ------l~a~i~ll~qaa~~~~------------~~~l~~--~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 206 ------LQAQIELLEQAAATPE------------IQDLQR--RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred ------HHHHHHHHHHHhcCCC------------HHHHHH--HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111333333333221 111111 46677889999999999999999999999999888887
Q ss_pred CCCch--HHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 179 DPDAN--KAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 179 ~~~~~--~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
+.... ... .+-.++...|..+.+...+++
T Consensus 266 d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 266 DRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred cccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 65542 222 566666666644444444444
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.25 E-value=0.0007 Score=55.18 Aligned_cols=180 Identities=14% Similarity=0.061 Sum_probs=129.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---------------------------- 82 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---------------------------- 82 (287)
..|+.+.|+.+-+.+-...|.-..++...-......|+++.|++..+.....
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 3466666666666666666666666666666667778888888877554321
Q ss_pred -------------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh----cCCChhHHHHHHHHH--hhh
Q 023081 83 -------------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF----NGKPTKTARSHGKKF--QVT 143 (287)
Q Consensus 83 -------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~a~~~~~~~--~~~ 143 (287)
.|+.. .....-+..+++.|+..++-.+++.+.+..|+.... ..+.-+.+..-+++. ...
T Consensus 246 ~~Ar~~A~~a~KL~pdlv--Paav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 246 ASARDDALEANKLAPDLV--PAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHHHHHHHhhcCCccc--hHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 11111 234445677888888888888999999988865443 122222333333322 356
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH-hccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLI-KQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 212 (287)
+.|++.+.....+..-+..|+|..|..--+.+....|....+..|+.+-. ..|+-.+...++.++++..
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999999888777778888875 4599999999999999873
No 212
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.25 E-value=3.1e-06 Score=44.21 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578999999999999999999999999999974
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.24 E-value=0.00045 Score=56.92 Aligned_cols=169 Identities=14% Similarity=0.016 Sum_probs=108.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhc-hhhhHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINA----GDRVDSALKDMAVVLKQ---QDRVDEAVEAIKSFRHLC-SKQAQESL 91 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~-p~~~~~~~ 91 (287)
+....+=..|....+|+.-+.+.+..-.. -++...+.+.+|.++.+ .|+.++|+..+..++... +.++ ..
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--d~ 219 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--DT 219 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--HH
Confidence 34445555677778898888888666554 34456778899999999 899999999999965543 3444 56
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 92 DNVLIDLYKKC---------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 92 ~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
+..+|.+|... ...++|+..|.++.++.++ ...-.|++.++...
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~---------------------------~Y~GIN~AtLL~~~ 272 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD---------------------------YYSGINAATLLMLA 272 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc---------------------------ccchHHHHHHHHHc
Confidence 77777766432 2477888888888888752 22223344444444
Q ss_pred CCHHHHHHHHHHHH--------hh--CCCchHHH---HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchh
Q 023081 163 GNYTSAEVVYRKAQ--------LI--DPDANKAC---NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETK 220 (287)
Q Consensus 163 g~~~~A~~~~~~al--------~~--~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 220 (287)
|.-.+...-.++.. +. -.....+| .++.+..-.|++++|.++++++++. .++.|.
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l---~~~~W~ 340 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL---KPPAWE 340 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCcchh
Confidence 43222221111111 00 11223455 6888889999999999999999987 456653
No 214
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=8.2e-05 Score=59.23 Aligned_cols=153 Identities=10% Similarity=-0.012 Sum_probs=90.6
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhhh-HHHHHHHHHHHHHHcCCHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-CSKQA-QESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~-~~~~~~~l~~~~~~~g~~~~A 108 (287)
.+|++.+|....++.+...|.+.-++..--.+++.+|+...-...+++.+.. +|+.+ ...+.-.++..+.+.|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444555555555555555555444444445555555555555555555443 33322 011222334444455555555
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----- 183 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----- 183 (287)
.+.-++++ ++++.+.-+...++.++...|++.++.++..+.-..-.+..
T Consensus 195 Ek~A~ral--------------------------qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 195 EKQADRAL--------------------------QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred HHHHHhhc--------------------------cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 55555544 44555778888889999999999999998877543322211
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH
Q 023081 184 KACNLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 184 ~~~~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
..|+.+.++..-++++.|..+|.+-+
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHH
Confidence 23467888888899999999997655
No 215
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.18 E-value=5.6e-06 Score=43.19 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4578999999999999999999999999999975
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.18 E-value=0.0015 Score=53.35 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=112.5
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+-.++.-++..+..|+++.|.+-|+.++. +|.. .-.+..|-.--...|..+-|..+-+++....|.-.| .+...-.
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~W--A~~AtLe 196 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPW--AARATLE 196 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCch--HHHHHHH
Confidence 34455667888899999999999976653 4443 112333333445789999999999999999998763 4444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchh----------------hhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHG----------------EAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
..+..|+|+.|+++.+......... ..........+.+.-.. ++++.|+-...-..-+..+++
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~-a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE-ANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-HhhcCCccchHHHHHHHHHHh
Confidence 6678899999999988776632210 00111122333333333 678888888888888999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~ 182 (287)
.|+..++-..++.+.+..|..
T Consensus 276 d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred ccchhhhhhHHHHHHhcCCCh
Confidence 999999999999998877754
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.17 E-value=0.00055 Score=57.55 Aligned_cols=170 Identities=17% Similarity=0.137 Sum_probs=117.5
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----------
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---------- 86 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------- 86 (287)
+....-..+-+-.....++..-++.-.+|++.+|+.+.++..||.-. .....+|..+++++++.....
T Consensus 166 D~~r~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 166 DALRPAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred CccCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 33444455566678889999999999999999999999998887622 234677777777776543211
Q ss_pred -------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 87 -------------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 87 -------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
+...+-..++.+..+.|+.++|++.++..++..|.. +...+..
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~------------------------~~l~Ire 299 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL------------------------DNLNIRE 299 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc------------------------chhhHHH
Confidence 112345568889999999999999999998876631 1456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHH-HHHHHHHh-ccC---------------HHHHHHHHHHHHhcc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLID-PDANKAC-NLSHCLIK-QAR---------------YTEARSVLEDVLLGK 212 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~-~l~~~~~~-~g~---------------~~~A~~~~~~~l~~~ 212 (287)
++..++...+.|.++...+.+.-++. |.....+ .-+.+..+ .++ ...|.+.+.+|++.+
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999999999988864332 3333332 22222111 111 134677888888865
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.09 E-value=0.00061 Score=49.05 Aligned_cols=108 Identities=24% Similarity=0.279 Sum_probs=76.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhc---C-CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFN---G-KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~-~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
+......++.+.++..+++++.+... ..+. . .........++.. ...+...++..+...|++++|+..
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G-~~l~~~~~~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRG-DFLPDLDDEEWVEPERERLREL-------YLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--S-STTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCC-CCCCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccCHHHHHHH
Confidence 44445567888888888888887642 1111 1 1122222222221 356777889999999999999999
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++++..+|.+...+ .+..++...|+..+|+..|++....
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 999999999998887 8999999999999999999988764
No 219
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=1.2e-05 Score=41.95 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+|+++|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666665554
No 220
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=2.9e-05 Score=64.65 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=119.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhch------hhhHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF-RHLCS------KQAQESLDNVL 95 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p------~~~~~~~~~~l 95 (287)
.+.-+.++...+...+..-...++....+.+.+....+..++..|++.+|.+.+... +...| .-....+++.+
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 334455566677777777777788777888899999999999999999999988765 22222 21222457899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|-++++.|.|.-+..+|.+++...-. ..-+|-..... ..-.......+.++.|..|...|++-.|.++|.++
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~-qL~~g~~~~~~-------~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCS-QLRNGLKPAKT-------FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHH-HHhccCCCCcc-------eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 99999999999999999999972210 00011000000 00011225788999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHh
Q 023081 176 QLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~ 194 (287)
......+|..| .|+.|++.
T Consensus 362 v~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 362 VHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHhcCcHHHHHHHHHHHH
Confidence 99999999998 89999864
No 221
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2e-05 Score=59.52 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=73.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|..++...+|+.|+.+|.+++.++|. .+..|.+.+.+|++..+++.+....+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~--------------------------~~~Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPT--------------------------VASYYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCC--------------------------cchhhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 44455556778888888877777664 5677888899999999999999999999
Q ss_pred HhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+++.|+.... +.+|.+......+++|+..+.++.+..
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 9999888766 488999988899999999999886654
No 222
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0015 Score=50.55 Aligned_cols=192 Identities=15% Similarity=0.114 Sum_probs=111.6
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHh----------
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD--------------EAVEAIKSFRHL---------- 82 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------------~A~~~~~~~~~~---------- 82 (287)
+-++..|+|..++..-++.-... ....-...+...|..+|.+. .|+..+...++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHH
Confidence 44455677877777665543332 45556666666776666532 222222221111
Q ss_pred -------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch---hhhh-cCCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 83 -------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---GEAF-NGKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 83 -------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
............-+.+|...|++++|.+.......+.-. ..++ .....+.++..+++ ...++. -.+
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~-mq~ide--d~t 171 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKK-MQQIDE--DAT 171 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccch--HHH
Confidence 100010023334567888999999999988875443221 1111 12234455555554 233332 233
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 152 LGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 152 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
+..||..+.. .+++.+|.-+|++.-...|..+... .++.|+..+|++++|...++.++.. ++.++..+...
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k---d~~dpetL~Nl 247 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK---DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc---cCCCHHHHHHH
Confidence 4444444432 3578999999999887555555554 8999999999999999999999987 44444443333
No 223
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.05 E-value=0.00023 Score=57.19 Aligned_cols=131 Identities=8% Similarity=-0.016 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK-CGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
-+|..+.....+.+..+.|..+|.+++...+... .+|...|.+-.. .++.+.|..+|+.+++..+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~----------- 68 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPS----------- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----------
Confidence 3677777888888889999999999985544333 678888888666 56666699999999988775
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
+...|......+...|+.+.|...|++++..-+... ..| .....-...|+.+....+.+++
T Consensus 69 ---------------~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 69 ---------------DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp ----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788899999999999999999999999998766655 345 5677778889999999988888
Q ss_pred Hhcc
Q 023081 209 LLGK 212 (287)
Q Consensus 209 l~~~ 212 (287)
.+..
T Consensus 134 ~~~~ 137 (280)
T PF05843_consen 134 EELF 137 (280)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 224
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00065 Score=60.44 Aligned_cols=171 Identities=10% Similarity=0.071 Sum_probs=104.7
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
-...+......|-.++|..+|++.-+ +-.|-..|...|.+++|.+..+.--++.-. +.++..+.-+..
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr----~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR----NTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh----hhHHHHHHHHHh
Confidence 33445555666667777777765532 223445666677777776655432222222 356667777788
Q ss_pred cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Q 023081 102 CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI--- 178 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 178 (287)
.++.+.|+++|+++-.......-......+..+.++++ ..++..|...|..+...|+.+.|+.+|..+-..
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~ 944 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSM 944 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhh
Confidence 88999999998876332111000011122233333332 235677777888888899999999888876541
Q ss_pred ------------------CCCchHH-HHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 179 ------------------DPDANKA-CNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 179 ------------------~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+..+ +.||+.|...|+..+|+.+|.++-.
T Consensus 945 VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 1122233 4899999999999999999987654
No 225
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.0012 Score=50.09 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=103.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhh----
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQ---- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~---- 86 (287)
.++.|...+.+|- +.++.+|+.++++++++..+.. ..+..+|.+|-.. .++++|+.+|+++-+.....
T Consensus 73 aat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 73 AATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3456666666654 5589999999999998765432 3355788888665 89999999999998765422
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.-.......+..-...++|.+|+..|++.....-+.. .++. .--..++.-|.|+.-..+.-
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~------------LLKy-------s~KdyflkAgLChl~~~D~v 212 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN------------LLKY-------SAKDYFLKAGLCHLCKADEV 212 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HHHh-------HHHHHHHHHHHHhHhcccHH
Confidence 1113455566666777999999999998876532110 0000 01233566788888889998
Q ss_pred HHHHHHHHHHhhCCCchHH
Q 023081 167 SAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~ 185 (287)
.+...+++..+++|.+...
T Consensus 213 ~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 213 NAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHhcCCccccc
Confidence 8999999999999988554
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.03 E-value=1.5e-05 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555553
No 227
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00062 Score=60.56 Aligned_cols=144 Identities=16% Similarity=0.128 Sum_probs=100.2
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhchhhh-------
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF----------RHLCSKQA------- 87 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------~~~~p~~~------- 87 (287)
+-+.|...|.|++|.+.-+.-=++ .--..+++.|.-+...++.+.|+++|+++ +.-+|...
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 445556667777666654322111 11357889999999999999999999987 22344321
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 88 -QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 88 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
-..++...|......|+.+.|+.+|..+-.......+. .|+..+.+.- .....+..+.+.+|..|...|+
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i-------A~esgd~AAcYhlaR~YEn~g~ 982 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI-------AEESGDKAACYHLARMYENDGD 982 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH-------HHhcccHHHHHHHHHHhhhhHH
Confidence 11467888998899999999999999988766543332 4444333322 2224467888999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023081 165 YTSAEVVYRKAQL 177 (287)
Q Consensus 165 ~~~A~~~~~~al~ 177 (287)
+.+|+.+|.++-.
T Consensus 983 v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 983 VVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 228
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=0.001 Score=49.04 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcH
Q 023081 71 EAVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (287)
+.....++....+|...+.. ....++..+...|++++|...++.++....+ +.+ ..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D-------------e~l----------k~ 126 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD-------------ENL----------KA 126 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh-------------HHH----------HH
Confidence 45556666666665543222 3566788889999999999999998876432 111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH--HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA--CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+-.++|.+...+|.+++|+..+.... ++..... -..|.++...|+.++|+..|++++..
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 456779999999999999998887653 2233332 26899999999999999999999987
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.95 E-value=0.00059 Score=49.15 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=73.2
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDR----------------------VDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
..|......++.+.++..+++++.+... ...+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 3455666778999999999999976421 123444678888999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
.+|-+- .++..+..+|...|+..+|+..|++.....
T Consensus 91 ~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 91 LDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999876 789999999999999999999999887653
No 230
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1.1e-05 Score=41.97 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=17.3
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
+++.+|+++.+|+++|.+|...|++++|+
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45556666666666666666666665554
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.92 E-value=0.00075 Score=58.33 Aligned_cols=122 Identities=14% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
..+.+.|.+.+.......|+.+-..+..|.++...|+.++|++.|++++....... ..-.+..++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 55778899999999999999999999999999999999999999999885433221 1135777888999999999999
Q ss_pred HHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhh
Q 023081 110 ELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-------TSAEVVYRKAQLI 178 (287)
Q Consensus 110 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 178 (287)
..|....+.+.- ......+..|.++...|+. ++|...|+++-..
T Consensus 326 ~~f~~L~~~s~W-------------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKW-------------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhcccc-------------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999998876441 0245567789999999999 8888888887654
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00021 Score=54.45 Aligned_cols=101 Identities=10% Similarity=-0.075 Sum_probs=86.7
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHh--------cCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAIN--------AGDRVD----------SALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
..+...-|+-++..|+|.+|...|+.|+. ..|..+ ..+.+++.|+...|+|-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566788889999999999999999873 235442 346688999999999999999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...|.+. .+++..|......-+.++|..-|.++++++|.
T Consensus 258 ~~~~~nv--KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHHPGNV--KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcCCchH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 9999998 78888999999889999999999999999884
No 233
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.85 E-value=0.0028 Score=46.84 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
...+|..+...|++++|+..++.++....+... .-+-..++.+...+|.+++|+..+...-.-.-
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-------------- 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-------------- 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--------------
Confidence 446888999999999999999999976555432 23467789999999999999998876443321
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
.+......|.++...|+-++|...|++++...++.+
T Consensus 158 -------------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 -------------AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred -------------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 244566789999999999999999999999875543
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00078 Score=53.85 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+...++..+.+.|-|++|.+..++++++++.+..+. ..+.++...|+++++.++..+--.
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 366677788899999999999999999999999997765 799999999999999998876443
No 235
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0019 Score=49.45 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QE---SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
...+..-+.+|....++++|...+.++.+-..++. ++ ..+...+.+......+.++..+|+++..++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~-------- 102 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV-------- 102 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------
Confidence 34566678889999999999999999987655442 11 2355667777788899999999999987753
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH----HHHHHHHhccCHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC----NLSHCLIKQARYTEA 201 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~----~l~~~~~~~g~~~~A 201 (287)
-...|+....-...+--..+.-++++|++.|++++.+-.... ..+ ..++++.+..++.+|
T Consensus 103 -------------E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 103 -------------ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred -------------HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 223344444444445555678899999999999988544332 222 578889999999999
Q ss_pred HHHHHHHHh
Q 023081 202 RSVLEDVLL 210 (287)
Q Consensus 202 ~~~~~~~l~ 210 (287)
...+.+-..
T Consensus 170 a~a~lKe~~ 178 (308)
T KOG1585|consen 170 ATAFLKEGV 178 (308)
T ss_pred HHHHHHhhh
Confidence 887766443
No 236
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.81 E-value=0.0056 Score=50.32 Aligned_cols=167 Identities=8% Similarity=-0.019 Sum_probs=117.9
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKD------------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~------------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 73 (287)
.++-+.+..+|++.++|..+.......-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45667899999999999988766544322 456678899999999999888888888888888999999
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYK---KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.-+++++..+|++. .+|....+... ..-.+......|.+++........-............. .-..
T Consensus 86 ~~we~~l~~~~~~~--~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~--------~~l~ 155 (321)
T PF08424_consen 86 KKWEELLFKNPGSP--ELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE--------FMLY 155 (321)
T ss_pred HHHHHHHHHCCCCh--HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH--------HHHH
Confidence 99999999999876 55554433222 23468888999999888644211000000000000000 0356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++..+.......|..+.|+..++..++.+-..
T Consensus 156 v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~ 187 (321)
T PF08424_consen 156 VFLRLCRFLRQAGYTERAVALWQALLEFNFFR 187 (321)
T ss_pred HHHHHHHHHHHCCchHHHHHHHHHHHHHHcCC
Confidence 67788888899999999999999999976433
No 237
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.81 E-value=0.00095 Score=59.74 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=79.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
...+++.+|+....+.++..|+...+...-|..+.++|+.++|..+++..-...+++. .....+-.+|..++++++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhhhhHHH
Confidence 5578999999999999999999999999999999999999999987777666666554 56777888999999999999
Q ss_pred HHHHHHHhccch
Q 023081 110 ELLKQKLRMIYH 121 (287)
Q Consensus 110 ~~~~~al~~~~~ 121 (287)
.+|++++..+|.
T Consensus 98 ~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 98 HLYERANQKYPS 109 (932)
T ss_pred HHHHHHHhhCCc
Confidence 999999999984
No 238
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.0014 Score=52.26 Aligned_cols=98 Identities=10% Similarity=-0.000 Sum_probs=85.8
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
-|-.-|.-|+...+|..|+..|.+.|+..-.+ +..|.+.|.+....|+|..|+.-..+++..+|.+. ..+..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhhh
Confidence 34557888999999999999999999875332 55688999999999999999999999999999987 6777788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccc
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++....++.+|..+++..+.++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 899999999999999999988765
No 239
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.76 E-value=0.0017 Score=54.03 Aligned_cols=153 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------------C------------CCC---HHHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------------G------------DRV---DSALKD 58 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------------~------------~~~---~~~~~~ 58 (287)
+..++..+|.+.+++..++.++..+|+.+.|.++.++|+-. + +.+ --+.+.
T Consensus 29 l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 29 LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 44567788888888888888888888888888888877611 1 111 123444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 59 MAVVLKQQDRVDEAVEAIKSFRHLCSK-QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 59 la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
....+.+.|-+.-|+++.+-.+.++|. ++. .+...+-....+.++|+--++.++........ .
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~-g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~-------------~-- 172 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPL-GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR-------------N-- 172 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc-hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh-------------h--
Confidence 556667777777777777777777776 542 23333334444566666666655543331000 0
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCc
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNY---------------TSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 182 (287)
.+.. -|..-+..+.++...++- ++|...+++|+...|.-
T Consensus 173 ---~~~~---lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 173 ---WLSL---LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ---hhhh---CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 0001 345666777788888877 89999999998866653
No 240
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.75 E-value=6.7e-05 Score=39.01 Aligned_cols=32 Identities=38% Similarity=0.515 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.+|+.+|.+|...|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46888999999999999999999999998884
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0037 Score=47.91 Aligned_cols=104 Identities=17% Similarity=0.099 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC----------cHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE----------TSRILGNLGWAY 159 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~lg~~~ 159 (287)
.+...-|+-++..|+|.+|...|+.++..-.+ +.+...|. ....+.+.+.|+
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~------------------L~lkEkP~e~eW~eLdk~~tpLllNy~QC~ 240 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRN------------------LQLKEKPGEPEWLELDKMITPLLLNYCQCL 240 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH------------------HHhccCCCChHHHHHHHhhhHHHHhHHHHH
Confidence 45667788899999999999999998875331 12222222 455788899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 160 MQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|+|-++++.....+...|++..++ ..|.+....-+..+|..-|..+++.
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999999999999999999999998876 8899998888999999999999987
No 242
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.67 E-value=0.00014 Score=37.70 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.+++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455566666666666666666666666555
No 243
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.61 E-value=0.00013 Score=60.77 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=86.8
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 103 (287)
.-+...+..++++.|+..|.++|+++|+.+..+.+.+.++.+.+++..|+.-+.++++.+|... ..+...|......+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVMALG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHHhHH
Confidence 4466678889999999999999999999988899999999999999999999999999999877 67888888888899
Q ss_pred CHHHHHHHHHHHHhccch
Q 023081 104 RLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~ 121 (287)
.+.+|...|+......|+
T Consensus 87 ~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHHHHHHhhhcCcC
Confidence 999999999998888775
No 244
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.54 E-value=0.00014 Score=60.64 Aligned_cols=106 Identities=15% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.-+.-....+.++.|+..|.++++++|+.+ .++...+..+.+.+++..|+.-+.++++.+|.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~---------------- 70 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDPT---------------- 70 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCch----------------
Confidence 445566677889999999999999999887 56666778888999999999999998888764
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC 191 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~ 191 (287)
...+++..|.+....+++.+|+..|+......|+++.+. .+..|
T Consensus 71 ----------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 71 ----------YIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred ----------hhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 567788889999999999999999999999999998775 44444
No 245
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00072 Score=53.87 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A 168 (287)
.-+-.-|+-|++.++|..|+..|.++++..- .+|+ +...|.+.+-+....|+|..|
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-----------------------~D~dlnavLY~NRAAa~~~l~NyRs~ 138 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKC-----------------------ADPDLNAVLYTNRAAAQLYLGNYRSA 138 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-----------------------CCccHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455678889999999999999999998632 1222 577889999999999999999
Q ss_pred HHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 169 EVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+....+++..+|.+..++ .=+.|+..+.++.+|..+.+..+..
T Consensus 139 l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 139 LNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999997775 7889999999999999999888765
No 246
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.46 E-value=0.00013 Score=58.22 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~ 105 (287)
+.-.+..|.++.|++.|..+|.++|.....+...+.++..+++...|+.-+..++.++|+.. .-+-..+......|+|
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHhhch
Confidence 34456678899999999999999998888888899999999999999999999999988775 3444455566677999
Q ss_pred HHHHHHHHHHHhccc
Q 023081 106 DEQIELLKQKLRMIY 120 (287)
Q Consensus 106 ~~A~~~~~~al~~~~ 120 (287)
++|...+..+.+++-
T Consensus 199 e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998888764
No 247
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.45 E-value=0.00012 Score=58.48 Aligned_cols=120 Identities=18% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh
Q 023081 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142 (287)
Q Consensus 63 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~ 142 (287)
.+..|.++.|++.|..++.++|... .++...+.++.+.+....|+.-+..+++++|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~D--------------------- 180 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPD--------------------- 180 (377)
T ss_pred HhcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcc---------------------
Confidence 3456778888888888888888766 56667777788888888888887777766653
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
+...+-..|.....+|++.+|...+..+.+++-+...--.+-.+.-..+..++-...+++..+
T Consensus 181 -----sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 181 -----SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred -----cccccchhhHHHHHhhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 555566678888888889999888888888765543333444444444444444444444443
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.44 E-value=0.011 Score=49.03 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=99.0
Q ss_pred CCchHHHHhHHhHHh---hCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc
Q 023081 17 PGDSPYVRAKHVQLV---EKDPEAAIVLFWKAI-NAGDRVDSALKDMAVVLKQQ---------DRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~ 83 (287)
+.....+..|.+... .|+.++|+..+..++ ...+.+++.+..+|.+|... ...++|+..|.++.+..
T Consensus 177 ~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 177 NQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred cchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 445666778888888 899999999999954 45567788999999888543 24899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL-RMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
|+. ..+.+++.++.-.|.-.+.....++.. .+... ..++ ....+-.+....-.++.+..-.
T Consensus 257 ~~~---Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l--------------lg~k-g~~~~~~dYWd~ATl~Ea~vL~ 318 (374)
T PF13281_consen 257 PDY---YSGINAATLLMLAGHDFETSEELRKIGVKLSSL--------------LGRK-GSLEKMQDYWDVATLLEASVLA 318 (374)
T ss_pred ccc---cchHHHHHHHHHcCCcccchHHHHHHHHHHHHH--------------HHhh-ccccccccHHHHHHHHHHHHHc
Confidence 754 245566666666676444443333322 22110 0000 0011111333445677888889
Q ss_pred CCHHHHHHHHHHHHhhCCCc
Q 023081 163 GNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~ 182 (287)
|++++|.+++++++...|..
T Consensus 319 ~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 319 GDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred CCHHHHHHHHHHHhhcCCcc
Confidence 99999999999999887654
No 249
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.025 Score=47.80 Aligned_cols=175 Identities=14% Similarity=0.081 Sum_probs=121.5
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhc---CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINA---GDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDN 93 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~---~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~ 93 (287)
+.-+-...|++.+|++....+.+. .|. .+..+..+|......|.++.|...|..+.+... .+.+.-...
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444556789999999988777653 354 245677788888888999999999999988754 334445677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch-hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH-GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
.++..|...|+-+.-.+.++. +.|. ...+.+. .....+++..|...+.++++.+|...+
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq-----------------~l~a~~~~v~glfaf~qn~lnEaK~~l 468 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ-----------------RLEASILYVYGLFAFKQNDLNEAKRFL 468 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 788899988876554444432 2221 0000000 002556778888999999999999999
Q ss_pred HHHHhhCCCc--hH--HH---HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 173 RKAQLIDPDA--NK--AC---NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 173 ~~al~~~~~~--~~--~~---~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
.+.++..... .. .+ -||.+....|+..++....+-++......++.+
T Consensus 469 ~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 469 RETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 9999876321 11 11 578899999999999999998887764445543
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.43 E-value=0.00026 Score=36.37 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555553
No 251
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.42 E-value=0.016 Score=39.11 Aligned_cols=102 Identities=16% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.-....|-|++|...++++++....-+ ...+-++-- | +...+-.|+..+...|+|++++..-..+
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP------~eEaFDh~G-F-------DA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIP------AEEAFDHDG-F-------DAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHH-H-------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCC------hHhhccccc-H-------HHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4445566899999999999988643100 001111100 1 4667778899999999999887777777
Q ss_pred Hh-------hCCCchHHH-----HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 176 QL-------IDPDANKAC-----NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 176 l~-------~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+. ++.+....| +.+.++..+|+.++|+..|+.+-+.
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 64 556655555 6888999999999999999988764
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.029 Score=44.42 Aligned_cols=153 Identities=16% Similarity=0.103 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..-..-+.-....|++.+|...|..++...|++. .+...++.+|...|+.+.|...+...-..... +
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---------~-- 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQAQD---------K-- 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCcccchh---------h--
Confidence 4455667778899999999999999999999887 78889999999999999999887753222110 0
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...........+.+.....+. ..+++.+..+|++... +.++..+...|+.++|.+.+-..+...
T Consensus 202 --------------~~~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 202 --------------AAHGLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred --------------HHHHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 000100111222333333322 2345556779988665 699999999999999999999888774
Q ss_pred cCCCCchhHHHHHHHHHHhcccc
Q 023081 213 LSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
.+..+.....+..+++..++..
T Consensus 267 -~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 267 -RGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred -ccccCcHHHHHHHHHHHhcCCC
Confidence 2334444555666666666643
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.40 E-value=0.0005 Score=36.20 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.+||.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666666666666666666665443
No 254
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.002 Score=54.12 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=95.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hccchhhhhcCCChhHHHHHHHH
Q 023081 61 VVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL-RMIYHGEAFNGKPTKTARSHGKK 139 (287)
Q Consensus 61 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~a~~~~~~ 139 (287)
..+.+..+..-+..-.+.++....+.+ .......+.++-.|++.+|.+.+...= ...+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~--~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~------------------- 272 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSS--MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEA------------------- 272 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCc--HHHHHHHHHHHHhcchHHHHHHHHhccccccc-------------------
Confidence 344444555555554454444444444 466677888888999999998765421 1111
Q ss_pred HhhhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----h----CC----------CchHHHHHHHHHHhccCH
Q 023081 140 FQVTVKQE--TSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----I----DP----------DANKACNLSHCLIKQARY 198 (287)
Q Consensus 140 ~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~----~~----------~~~~~~~l~~~~~~~g~~ 198 (287)
.-.+.|. ....|+++|.++++.|.|.-+..+|++++. + .| .....++.|..|...|++
T Consensus 273 -g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP 351 (696)
T KOG2471|consen 273 -GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP 351 (696)
T ss_pred -CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc
Confidence 0111122 244578999999999999999999999995 1 11 112335899999999999
Q ss_pred HHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 199 TEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 199 ~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
-.|.++|.+++..+..++.-|..+.++
T Consensus 352 l~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 352 LLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999876666666544333
No 255
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.39 E-value=0.00039 Score=35.66 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
+++.+|.++...|++++|...|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56778888888888888888888888888763
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.36 E-value=0.0024 Score=41.52 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 113 (287)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++.-......+..++...|.-+.-...++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4556777888888888888888888888888888888888888877654211344445555555565444444343
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.34 E-value=0.00046 Score=36.34 Aligned_cols=28 Identities=39% Similarity=0.611 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
++.++|.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888888888888886543
No 258
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.31 E-value=0.0075 Score=46.28 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhCCC--c----hHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYT-------SAEVVYRKAQLIDPD--A----NKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~~~--~----~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++..+||+|...|+-+ .|+..|.+++..... . ... +.+|.+..++|++++|..+|.+++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 677889999999999954 555666666553322 1 122 379999999999999999999999874
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.30 E-value=0.041 Score=48.91 Aligned_cols=161 Identities=16% Similarity=0.050 Sum_probs=111.3
Q ss_pred CCchHHHHhHHhHHhh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVE-----KDPEAAIVLFWKAINA-----GDRVDSALKDMAVVLKQQD-----RVDEAVEAIKSFRH 81 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~~~ 81 (287)
.+..+.+.+|.++..- .|.+.|+.+|+.+... ....+.+.+.+|.+|.+.. +...|+.++.++..
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 4567778888887653 6899999999988761 1114567888999998854 67889999999887
Q ss_pred hchhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
....+ ....+|.+|..-. ++..|.++|..+.... +..+.+.+|.+
T Consensus 322 ~g~~~----a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----------------------------~~~A~~~la~~ 369 (552)
T KOG1550|consen 322 LGNPD----AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----------------------------HILAIYRLALC 369 (552)
T ss_pred cCCch----HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----------------------------ChHHHHHHHHH
Confidence 75543 5556677766544 5678888888877654 56778888888
Q ss_pred HHHc----CCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHh-ccCHHHHHHHHHHHHhc
Q 023081 159 YMQK----GNYTSAEVVYRKAQLIDPDANK-ACNLSHCLIK-QARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~----g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~-~g~~~~A~~~~~~~l~~ 211 (287)
|..- -+...|..+++++.+.+ .+. .+.++..+.. .++++.+...+....+.
T Consensus 370 y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 370 YELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 7643 47789999999998876 322 3344433321 16666666665555544
No 260
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.26 E-value=0.027 Score=38.10 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=73.5
Q ss_pred hHHHHhH--HhHHhhCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-
Q 023081 20 SPYVRAK--HVQLVEKDPEAAIVLFWKAINAGDR------------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS- 84 (287)
Q Consensus 20 ~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p- 84 (287)
.+|+.|+ .-.+..|-|++|...+++++...-. +.-.+..|+.++..+|+|++++....+++....
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3444444 4456779999999999999876422 244577899999999999999988888876532
Q ss_pred ------h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 85 ------K--QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 85 ------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
+ ..|..+....+..+...|+.++|+..|+.+-++.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2 2465667778888899999999999999987763
No 261
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.02 Score=48.27 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=116.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-V--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 86 (287)
.+..++.+|.....-+.++.|...|..+.+.... + +..-.++|.+|...|+-+.--+.++. +.|.+
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQR 442 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHH
Confidence 3456678888888999999999999999876533 2 33455789999998876654444443 34432
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
-...+.+..|...+.++++.||...+++.++... +++..+- ..-.+..+|.+....|+..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman------------aed~~rL--------~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN------------AEDLNRL--------TACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc------------hhhHHHH--------HHHHHHHHHHHHHHhcchH
Confidence 1224677778888899999999999999998853 2222222 4667788999999999999
Q ss_pred HHHHHHHHHHhhC---CCchH-HH---HHHHHHHhccC--HHHHHHHH
Q 023081 167 SAEVVYRKAQLID---PDANK-AC---NLSHCLIKQAR--YTEARSVL 205 (287)
Q Consensus 167 ~A~~~~~~al~~~---~~~~~-~~---~l~~~~~~~g~--~~~A~~~~ 205 (287)
++.....-++... ||.+. .| -+-.++...|+ .....+.+
T Consensus 503 es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999888887654 45533 35 35566777777 44444444
No 262
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.18 E-value=0.09 Score=42.65 Aligned_cols=171 Identities=16% Similarity=0.044 Sum_probs=88.4
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK---- 101 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~---- 101 (287)
...+++..|...+..+-... ++.....++.+|... .+..+|..+|+.+.... ++ .....+|.+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~--~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LA--EALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cH--HHHHhHHHHHhcCCCc
Confidence 34455555555555554421 224455555555433 23555555555333321 11 233344555444
Q ss_pred cCCHHHHHHHHHHHHhccch-h--------hhh-cCC-------ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH---
Q 023081 102 CGRLDEQIELLKQKLRMIYH-G--------EAF-NGK-------PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ--- 161 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~~-~--------~~~-~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~--- 161 (287)
..++.+|..+|+++.+.... + ..+ .+. ....+...+.+. ....++.+...+|.+|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a---a~~~~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA---AELGNPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH---HHhcCHHHHHHHHHHHHcCCC
Confidence 23556666666655554221 1 111 120 011222222221 111267888889988865
Q ss_pred -cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc---------------CHHHHHHHHHHHHhc
Q 023081 162 -KGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQA---------------RYTEARSVLEDVLLG 211 (287)
Q Consensus 162 -~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~l~~ 211 (287)
..++.+|..+|+++-+... ....+.++ ++...| +...|..++..+...
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 3488999999999988776 33334677 666555 556666666666654
No 263
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.08 E-value=0.12 Score=42.49 Aligned_cols=151 Identities=9% Similarity=-0.052 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 40 VLFWKAINAGDRVDSALKDMAVVLKQQDR------------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 40 ~~~~~al~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
..|++.++.+|.++.+|..+....-..-. .+.-+.+|++|++.+|++. .+...+-.+..+..+.++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHH
Confidence 45778899999999999998865544322 4677789999999999876 666666666677777778
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCC----
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ---KGNYTSAEVVYRKAQLIDP---- 180 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~---- 180 (287)
..+.+++++..+|. ++.+|...-..... .-.++.....|.+++..-.
T Consensus 84 l~~~we~~l~~~~~--------------------------~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~ 137 (321)
T PF08424_consen 84 LAKKWEELLFKNPG--------------------------SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRS 137 (321)
T ss_pred HHHHHHHHHHHCCC--------------------------ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhc
Confidence 78888887777654 45555443332222 2345666666666665210
Q ss_pred -------Cch----H---H-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCc
Q 023081 181 -------DAN----K---A-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTE 218 (287)
Q Consensus 181 -------~~~----~---~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 218 (287)
..+ . . +.+...+...|..+.|+..++..++.+...+..
T Consensus 138 ~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 138 GRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 000 1 1 156777789999999999999999988544444
No 264
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.06 E-value=0.14 Score=42.78 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=98.3
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hh---------------------h-hHHHHHHHHHH
Q 023081 45 AINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SK---------------------Q-AQESLDNVLID 97 (287)
Q Consensus 45 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~---------------------~-~~~~~~~~l~~ 97 (287)
.+..+|.++.++..++.++..+|+.+.|.+.+++++-.. |. | ....+......
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 357789999999999999999999999999999885321 10 0 11223445566
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...+.|.+..|.++.+-.+.++|..+ ...+.+.+-....+.++|+--+..++....
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~D------------------------P~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDED------------------------PLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCC------------------------cchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 77788999999999998888877421 123344444445566777766666665544
Q ss_pred hCC-C----c-hHHHHHHHHHHhccCH---------------HHHHHHHHHHHhcc
Q 023081 178 IDP-D----A-NKACNLSHCLIKQARY---------------TEARSVLEDVLLGK 212 (287)
Q Consensus 178 ~~~-~----~-~~~~~l~~~~~~~g~~---------------~~A~~~~~~~l~~~ 212 (287)
... + . .-.+..+.++..+++. +.|...+.+|+...
T Consensus 168 ~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 168 KCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 211 1 1 1234677777778877 89999999988764
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.03 E-value=0.014 Score=39.00 Aligned_cols=92 Identities=10% Similarity=0.027 Sum_probs=68.8
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhchhhhHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDR-----------VDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
.+..++.+|++-+|++..+..+...++.. ..+..-|.++..+.. .-.|++.+.++..+.|..+ .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A--~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA--H 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH--H
Confidence 46778899999999999999998877664 445556777755532 5678888888888888876 5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..+.+|.-+.....|+++..-.++++.+
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 6666666655567788888877777765
No 266
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.15 Score=47.40 Aligned_cols=78 Identities=18% Similarity=0.134 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------------Cc--h-----------HHH-HHHHHHHhccCHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP------------DA--N-----------KAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------~~--~-----------~~~-~l~~~~~~~g~~~~A 201 (287)
+..-|..++..+...|+|..|....++|-.... .. . +-. .+...|...|-+++-
T Consensus 1219 ~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1219 NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 466688899999999999999888877643210 00 0 111 466778888999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHH
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKEL 228 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 228 (287)
+..++.++.. ...|...+....-+
T Consensus 1299 Isl~Ea~LGL---ERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1299 ISLLEAGLGL---ERAHMGMFTELAIL 1322 (1666)
T ss_pred HHHHHhhhch---hHHHHHHHHHHHHH
Confidence 9999888865 33444444444333
No 267
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.97 E-value=0.0017 Score=32.58 Aligned_cols=32 Identities=44% Similarity=0.656 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
.++..+|.++...|++++|...++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777888888888888888888888887764
No 268
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.93 E-value=0.0046 Score=35.59 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHH
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACN 187 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 187 (287)
+.++.+|..+.+.|+|++|..+.+.+++..|++..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 35678999999999999999999999999999977653
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.86 E-value=0.03 Score=40.35 Aligned_cols=84 Identities=12% Similarity=-0.010 Sum_probs=66.1
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..++.+..+....++.+++...+.-.--+.|..+.....-|.++...|++.+|+..++.+.+..|..+ ..--.++.++
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p--~~kALlA~CL 88 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP--YAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh--HHHHHHHHHH
Confidence 55666777778888999999988777778899999999999999999999999999999887777665 3344455666
Q ss_pred HHcCCH
Q 023081 100 KKCGRL 105 (287)
Q Consensus 100 ~~~g~~ 105 (287)
...|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 666654
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.85 E-value=0.36 Score=44.18 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=96.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHH--HHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQES--LDN 93 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~--~~~ 93 (287)
...|.+....|+++.|+++.+.++..-|.. ..+...+|.+..-.|++++|..+...+.+..... .+.. ...
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~ 541 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLL 541 (894)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 445677777888888888888888765543 3456677788888888888888888777664322 1111 233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
..+.+...+|+. +...-.++...... . -+...|-+.......+.++...-+++.+..-..
T Consensus 542 ~~s~il~~qGq~--~~a~~~~~~~~~~~-------------q-----~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear 601 (894)
T COG2909 542 QQSEILEAQGQV--ARAEQEKAFNLIRE-------------Q-----HLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEAR 601 (894)
T ss_pred HHHHHHHHhhHH--HHHHHHHHHHHHHH-------------H-----HhhhcccchhHHHHHHHHHHHHHHHhhhhHHhh
Confidence 345566677722 22222221111000 0 122223333344444444444444666665555
Q ss_pred HHHhhC----CCchH--H--HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 174 KAQLID----PDANK--A--CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 174 ~al~~~----~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++.. |.... . +.|+.+....|+.++|...+.+.....
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 602 LGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred hcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 555432 22211 1 267888888888888888888877765
No 271
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.85 E-value=0.075 Score=44.26 Aligned_cols=67 Identities=9% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD----RVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.......+...+.+....|.++.|...+.++...++ ..+.+....+..++..|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999887652 2467888899999999999999999988887
No 272
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.83 E-value=0.0084 Score=51.67 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=81.1
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHH
Q 023081 58 DMAVVL-KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSH 136 (287)
Q Consensus 58 ~la~~~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 136 (287)
++|.+| ...|+...|+.++..++...|.... .....++++....|-.-.|-..+.+++.+...
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s--------------- 674 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSS--------------- 674 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhccc---------------
Confidence 455555 4568999999999999988886532 24566788888888888888888888776532
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.|-.++.+|..+....+.+.|++.|++++..+|+++..-
T Consensus 675 -----------epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 675 -----------EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred -----------CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhH
Confidence 577788899999999999999999999999999987653
No 273
>PRK10941 hypothetical protein; Provisional
Probab=96.81 E-value=0.021 Score=45.41 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
-++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|..-++..++.+|+++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 34556677778888888888888888888887788888888888888888888888888888765
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.80 E-value=0.054 Score=40.29 Aligned_cols=99 Identities=13% Similarity=-0.038 Sum_probs=73.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESLD 92 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~ 92 (287)
.++..+|..|...|+.+.|++.|.++....... .+.+..+..+....|++.....++.++-..... .....+-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 567789999999999999999999977654322 566778888888999999999998888655321 1122344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..-|..+...++|.+|...|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 45566677789999999888776543
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.76 E-value=0.015 Score=37.84 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=47.0
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCC
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDR 68 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~ 68 (287)
.+...+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3456788999999999999999999999999999999999988665 4555555555555554
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.75 E-value=0.012 Score=33.93 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.++.+|..+.+.|+|++|..+.+.+++..|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3567778888888888888888888888888765
No 277
>PRK10941 hypothetical protein; Provisional
Probab=96.72 E-value=0.038 Score=43.95 Aligned_cols=61 Identities=16% Similarity=-0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++-.+|.+.++++.|+.+.+..+.+.|+++.-+ ..|.+|.++|.+..|..-++..++..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 44455666666666666666666666666665544 56666666666666666666666653
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.70 E-value=0.24 Score=39.94 Aligned_cols=189 Identities=16% Similarity=0.085 Sum_probs=108.9
Q ss_pred chHHHHhHHhHHhhC-CHHHHHHHHHHHHhc----CC------CC----HHHHHHHHHHHHHcCCHH---HHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEK-DPEAAIVLFWKAINA----GD------RV----DSALKDMAVVLKQQDRVD---EAVEAIKSFR 80 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~----~~------~~----~~~~~~la~~~~~~g~~~---~A~~~~~~~~ 80 (287)
...+|..|.....++ +++.|+.+++++.+. .+ +. ..++..++.+|...+..+ +|..+++.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 356788999999999 999999999999876 21 11 345778899999888754 4555555555
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hhh----------cCCChhHHHHHHHHH-hhhcCCCc
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EAF----------NGKPTKTARSHGKKF-QVTVKQET 148 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~----------~~~~~~~a~~~~~~~-~~~~~~~~ 148 (287)
...|+.+ .++.....+..+.++.+++.+.+.+++...+.. ..+ .......+...+..+ .....|..
T Consensus 115 ~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 115 SEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 5566655 444444445555788999999999998865411 110 122222333333221 22223322
Q ss_pred HHHHHHHHHH---HHHc--CC------HHHHHHHHHHHHh--hCCCch--------HHHHHHHHHHhccCHHHHHHHHHH
Q 023081 149 SRILGNLGWA---YMQK--GN------YTSAEVVYRKAQL--IDPDAN--------KACNLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 149 ~~~~~~lg~~---~~~~--g~------~~~A~~~~~~al~--~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~ 207 (287)
.. |.....+ +... ++ .+.....+..... ..|-.. ..|+.|...++.++|++|..+|+-
T Consensus 193 ~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 193 DQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 11 2222221 2221 22 2222233332111 111111 235789999999999999999997
Q ss_pred HHh
Q 023081 208 VLL 210 (287)
Q Consensus 208 ~l~ 210 (287)
++.
T Consensus 272 al~ 274 (278)
T PF08631_consen 272 ALH 274 (278)
T ss_pred HHH
Confidence 763
No 279
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.68 E-value=0.094 Score=40.31 Aligned_cols=101 Identities=17% Similarity=0.173 Sum_probs=70.0
Q ss_pred HcCCHHHHHHHHHHHHHhc-----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHH
Q 023081 65 QQDRVDEAVEAIKSFRHLC-----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKK 139 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~ 139 (287)
....+++|++.|.-++-.. +......++..++-+|...|+.+.....+++|+......-
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~---------------- 152 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAY---------------- 152 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH----------------
Confidence 3456788888777775331 1222336788889999999998877777777777654210
Q ss_pred HhhhcCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 140 FQVTVKQ----ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 140 ~~~~~~~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
.....| +...+.+.+|.+..+.|++++|..+|.+++......
T Consensus 153 -~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 153 -ENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred -HhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 011111 236688899999999999999999999999865444
No 280
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.65 E-value=0.38 Score=41.59 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|...++..-|...|+-.+...++.+... .....+..+|+-..+...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4567888888888988888888887764 6667778888888888888888876
No 281
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.65 E-value=0.0049 Score=30.71 Aligned_cols=30 Identities=17% Similarity=0.126 Sum_probs=14.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD 50 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 50 (287)
+++.+|.++...++++.|+..|+++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555544443
No 282
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.48 E-value=0.15 Score=42.60 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
|..+...=+...+++++|.-|..-|..++++...|.+...-....+.+...- ...+--.+..||.++++.+-
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~v--------aSfIetklv~CYL~~rkpdl 246 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSV--------ASFIETKLVTCYLRMRKPDL 246 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHH--------HHHHHHHHHHhhhhcCCCch
Confidence 3344455567788899999999999999998765544322111111111111 13344568999999999999
Q ss_pred HHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..-.+.+.++|.+..- ...+.|+..+.+|.+|...+--+.=.+
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988655 478999999999999988766555444
No 283
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.42 E-value=0.23 Score=44.23 Aligned_cols=161 Identities=11% Similarity=0.040 Sum_probs=96.1
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCCHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSAL----------KDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~la~~~~~~g~~~~A~~~ 75 (287)
+|..+.++.+| ++..|-.++...+.+-+++.|...|-+.-. .+.. ..- ...|.+-..-|++++|...
T Consensus 680 edA~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d-Y~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 680 EDAIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD-YAGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred HHHHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc-ccch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 45666777888 778999999999988888888887755422 1211 111 1223333334666666665
Q ss_pred HHHHHH-------------------h-------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCC
Q 023081 76 IKSFRH-------------------L-------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGK 128 (287)
Q Consensus 76 ~~~~~~-------------------~-------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~ 128 (287)
|-.+-+ + ..+.....++..+|..+.....|++|.++|.+.-......+.+ ...
T Consensus 757 yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le 836 (1189)
T KOG2041|consen 757 YLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLE 836 (1189)
T ss_pred hhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 533311 1 0111233567888888888899999999988765543332222 222
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
.++..+...+ .-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 837 ~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 837 LFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 2222222222 2366666777778888788877777776644
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.41 E-value=0.64 Score=41.50 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHcC---
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-----DRVDEAVEAIKSFRHL---CSKQAQESLDNVLIDLYKKCG--- 103 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~---~p~~~~~~~~~~l~~~~~~~g--- 103 (287)
...|..+++.+... .+..+...+|.+|..- .+.+.|+.+++.+... .-...+....+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 56788888877654 4567888888888654 5899999999999772 111111145667788887743
Q ss_pred --CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhh
Q 023081 104 --RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG---NYTSAEVVYRKAQLI 178 (287)
Q Consensus 104 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~ 178 (287)
++..|+.+|.++-... ++.+.+.+|.++.... ++..|.++|..|...
T Consensus 306 ~~d~~~A~~~~~~aA~~g----------------------------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG----------------------------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred cccHHHHHHHHHHHHhcC----------------------------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 6778888888887764 4777888999988766 678999999998653
Q ss_pred CCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhcc
Q 023081 179 DPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 179 ~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 212 (287)
.+..+ ++++.||.. .-+...|..++.++.+..
T Consensus 358 --G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 358 --GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred --CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44444 478888753 347789999999999873
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.37 E-value=0.27 Score=36.61 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..++..+|..|.+.|+.++|++.|.++....... ....++..+..+....+++........++-.....+..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d------- 108 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD------- 108 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch-------
Confidence 4678899999999999999999999988775422 23367888888999999999999999888766432110
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.-. ....-..-|..+...++|.+|...|-.+....
T Consensus 109 ----~~~---------~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 ----WER---------RNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred ----HHH---------HHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 000 12233446777778899999999988776544
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.35 E-value=0.011 Score=31.93 Aligned_cols=29 Identities=34% Similarity=0.413 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777777777777777777763
No 287
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.33 E-value=0.0095 Score=51.37 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=83.1
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVD-SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..|......|+...|+.++..|+...|... ....+||.+....|-...|...+.+++.+....+ -..+.+|.+|...
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep--l~~~~~g~~~l~l 689 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP--LTFLSLGNAYLAL 689 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc--hHHHhcchhHHHH
Confidence 345555568999999999999999888653 4578999999999999999999999999986556 4677899999999
Q ss_pred CCHHHHHHHHHHHHhccchh
Q 023081 103 GRLDEQIELLKQKLRMIYHG 122 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~~~~ 122 (287)
.+.+.|++.|+.+++..|..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKC 709 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCC
Confidence 99999999999999998853
No 288
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.27 E-value=0.033 Score=36.66 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=47.3
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.+.|+|.+|++.+.+.+........- ........++.++|.++...|++++|+..+++++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~-----------------~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNS-----------------SSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccc-----------------hhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 46699999999998888764320000 0000135567889999999999999999999999876
Q ss_pred CCch
Q 023081 180 PDAN 183 (287)
Q Consensus 180 ~~~~ 183 (287)
....
T Consensus 72 re~~ 75 (94)
T PF12862_consen 72 RENG 75 (94)
T ss_pred HHHC
Confidence 5543
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.26 E-value=0.014 Score=46.45 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=57.9
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
...+.-....|+.++|...|+.|+.++|++++++..+|......++.-+|-.+|-+++.+.|.+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 44555567789999999999999999999999999999999999999999999999999999664
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.26 E-value=0.27 Score=35.53 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
.+.+-..-|+++...|+|.+|+..|+.+....|..+..- .++.|+..+|+
T Consensus 43 ~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 43 FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 444455555555555555555555555555444444443 45555555554
No 291
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.21 E-value=0.0086 Score=45.46 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=53.8
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.....+|.+.|.+.|.+++.+.|+....|+.+|....+.|+++.|...|++.++++|++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567899999999999999999999999999999999999999999999999999965
No 292
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.43 Score=37.38 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=91.7
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH-H
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD-E 107 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~-~ 107 (287)
.....-..|+.+-+.+|.++|.+-.+|...-.++..++ +..+-++++.+.++-+|++- .+|...-.+....|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCcccc
Confidence 44456677888888888888888777776666665554 57788888888888888876 56665555555556665 4
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
-++....++.. +.++-.+|...-++...-+.++.=+.+..+.++.+-.+..+|
T Consensus 132 ELef~~~~l~~--------------------------DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 132 ELEFTKLMLDD--------------------------DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred hHHHHHHHHhc--------------------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 45555555543 333677888888888888888888888888888776665555
No 293
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.19 E-value=0.53 Score=38.16 Aligned_cols=154 Identities=16% Similarity=0.075 Sum_probs=92.9
Q ss_pred chHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 19 DSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
..+.+.++..+.. ..+...|+.+|+.+. ....+.+.+.||..|.. ..+..+|..+|+++....-... ..
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~ 149 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-AL 149 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HH
Confidence 3566777777665 356788888888544 34556788888888876 4488888888888887743321 12
Q ss_pred HHHHHHHHHHHc-----C--CHHHHHHHHHHHHhccc------hhhhh-cCC----ChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 91 LDNVLIDLYKKC-----G--RLDEQIELLKQKLRMIY------HGEAF-NGK----PTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 91 ~~~~l~~~~~~~-----g--~~~~A~~~~~~al~~~~------~~~~~-~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
....++.+|..- - +...|...|.++..... .+..| .|. ....+...+.+ +... .+...+
T Consensus 150 ~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~-Aa~~--g~~~a~ 226 (292)
T COG0790 150 AMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKK-AAEQ--GDGAAC 226 (292)
T ss_pred HHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH-HHHC--CCHHHH
Confidence 355555555543 1 33478888888776543 23333 221 34455555554 2222 237788
Q ss_pred HHHHHHHHHcC---------------CHHHHHHHHHHHHhhC
Q 023081 153 GNLGWAYMQKG---------------NYTSAEVVYRKAQLID 179 (287)
Q Consensus 153 ~~lg~~~~~~g---------------~~~~A~~~~~~al~~~ 179 (287)
+.++ ++...| +...|..++..+....
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 8888 666666 5555555555554433
No 294
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.45 Score=37.31 Aligned_cols=149 Identities=8% Similarity=0.011 Sum_probs=110.3
Q ss_pred hHhhcCCCCchHHHHhHHhHH-hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhchhhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQL-VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD-EAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~~ 87 (287)
.+|..+|-+...|.+.-.+.. ...+..+-++++.+.+..+|.+-++|...-.+....|++. .-++....++..+.++-
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY 147 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY 147 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch
Confidence 467889999998877666654 3467888999999999999999999999988888889888 88899999999887765
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhhhhcCCC--------------hhHHHHHHHHHhhhcCCCcHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGEAFNGKP--------------TKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
.+|...--+...-+.++.-+.+....++.+. +..+++.+. .+.-..+... .+...|++..+|
T Consensus 148 --HaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~-~I~~vP~NeSaW 224 (318)
T KOG0530|consen 148 --HAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD-KILLVPNNESAW 224 (318)
T ss_pred --hhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH-HHHhCCCCccHH
Confidence 4555544455556889999999999998765 333443221 1112222232 577888888888
Q ss_pred HHHHHHHHH
Q 023081 153 GNLGWAYMQ 161 (287)
Q Consensus 153 ~~lg~~~~~ 161 (287)
+.|.-++..
T Consensus 225 nYL~G~l~~ 233 (318)
T KOG0530|consen 225 NYLKGLLEL 233 (318)
T ss_pred HHHHHHHHh
Confidence 888777765
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.17 E-value=0.74 Score=39.70 Aligned_cols=169 Identities=16% Similarity=0.098 Sum_probs=111.0
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.+.|-+...+..+-.++-....+.-....+.+++...... .++..++.+|... ..++-...+++.++.+-++. ...
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~k-mal~el~q~y~en-~n~~l~~lWer~ve~dfnDv--v~~ 135 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESK-MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV--VIG 135 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH--HHH
Confidence 3455555555555555555555555666677777776554 7899999999998 56677888999999988877 678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch-------hhhh------cCCChhHHHHHHHHHhhhcCCCcHHHHHHH-HHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH-------GEAF------NGKPTKTARSHGKKFQVTVKQETSRILGNL-GWA 158 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-g~~ 158 (287)
..++..|.+ ++..++...|.+++...-. ...| .+...+.......+........-..+.+.- -.-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 888887766 9999999999999875421 0111 133333333333332222222233333333 244
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|....++++|+..++..++.+..+..+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar 242 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWAR 242 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhHH
Confidence 5677899999999999999887775543
No 296
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.78 Score=39.69 Aligned_cols=221 Identities=13% Similarity=0.076 Sum_probs=133.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
....+..|+++...+.-+......|+.+.|+..++..+. +.. .-.++.+|.++.-..+|..|...+........
T Consensus 257 l~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 257 KKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 345677899999999999999999999999999988876 332 23466788999999999999999988877643
Q ss_pred hhhHHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHhc-------cc-----------------------hhh--
Q 023081 85 KQAQESLDNVLI-DLYK--------KCGRLDEQIELLKQKLRM-------IY-----------------------HGE-- 123 (287)
Q Consensus 85 ~~~~~~~~~~l~-~~~~--------~~g~~~~A~~~~~~al~~-------~~-----------------------~~~-- 123 (287)
-.. ..|..++ -++. ..|+-++|...++...++ .| .+.
T Consensus 335 WS~--a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~ 412 (546)
T KOG3783|consen 335 WSH--AFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPY 412 (546)
T ss_pred hhH--HHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchH
Confidence 211 1222222 2222 123444444444333221 11 000
Q ss_pred ---hh--cCC---ChhHHHHHHHHH-hhhc-CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCc----hHH
Q 023081 124 ---AF--NGK---PTKTARSHGKKF-QVTV-KQET-SRILGNLGWAYMQKGNYTSAEVVYRKAQLI---DPDA----NKA 185 (287)
Q Consensus 124 ---~~--~~~---~~~~a~~~~~~~-~~~~-~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~----~~~ 185 (287)
+| +|. ...........+ .-.. ++++ .-.+..+|.++...|+...|..+|+..++. ...+ |.+
T Consensus 413 ~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA 492 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFA 492 (546)
T ss_pred HHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 01 111 111111111100 0111 2222 334667899999999999999999988842 2222 223
Q ss_pred -HHHHHHHHhccC-HHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 186 -CNLSHCLIKQAR-YTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 186 -~~l~~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+-+|..+..+|. ..++..++.+|-+.....+-..+..-++...+..++
T Consensus 493 ~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~~~r 542 (546)
T KOG3783|consen 493 LYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQAALHTVR 542 (546)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHh
Confidence 379999999988 999999999999864222222344455555555554
No 297
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=96.07 E-value=0.037 Score=30.42 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=27.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
+|+.+|..+|+.+.|...+++++.. .+......+..++..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~-----~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE-----GDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc-----CCHHHHHHHHHHHhc
Confidence 6788888888888888888888853 223333566666654
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.04 E-value=0.023 Score=30.63 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.++.++|.+|...|++++|+.++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666554
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.03 E-value=1.1 Score=40.55 Aligned_cols=152 Identities=11% Similarity=0.053 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHHHHcCCH
Q 023081 35 PEAAIVLFWKAINAG-DR---VDSALKDMAVVLK-QQDRVDEAVEAIKSFRHLCSKQ----AQESLDNVLIDLYKKCGRL 105 (287)
Q Consensus 35 ~~~A~~~~~~al~~~-~~---~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~----~~~~~~~~l~~~~~~~g~~ 105 (287)
...|+.+++-+++.. +. .+.++..+|.++. ...++++|..++++++.+...+ ........++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 566888888777422 11 1567888999887 7889999999999998876432 1234566778888888877
Q ss_pred HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCc-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhC--C
Q 023081 106 DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET-SRILGNL--GWAYMQKGNYTSAEVVYRKAQLID--P 180 (287)
Q Consensus 106 ~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~--~ 180 (287)
. |...+++.++.... .+.. ....+.+ ...+...+++..|++.++...... +
T Consensus 117 ~-a~~~l~~~I~~~~~-----------------------~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSET-----------------------YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred H-HHHHHHHHHHHHhc-----------------------cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 7 99999998876431 0001 1111222 222333389999999999988766 3
Q ss_pred CchHHH-----HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 181 DANKAC-----NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 181 ~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.++... ..+.+....+..+++++..+++..
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 444332 345666777878888888887754
No 300
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.98 E-value=0.27 Score=46.77 Aligned_cols=182 Identities=12% Similarity=0.019 Sum_probs=127.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHH------HHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIV------LFWKAI-NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC------- 83 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~------~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------- 83 (287)
...-....|+.....|.+.+|.+ ++.... ...|.....+..++.++.+.|++++|+.+-.++.-+.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 34455778888888889988888 444322 2347778889999999999999999999887775432
Q ss_pred -hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 84 -SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 84 -p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
|+.. ..+..++...+..+....|...+.++..+.... --...|....+..+++.++...
T Consensus 1011 s~~t~--~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls------------------~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1011 SPNTK--LAYGNLALYEFAVKNLSGALKSLNRALKLKLLS------------------SGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred CHHHH--HHhhHHHHHHHhccCccchhhhHHHHHHhhccc------------------cCCCCCchhhhhhHHHHHHhhH
Confidence 2223 346666767777778888888888777653210 0123455667778899999999
Q ss_pred CCHHHHHHHHHHHHhhCCC-----c-hHH--H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCch
Q 023081 163 GNYTSAEVVYRKAQLIDPD-----A-NKA--C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTET 219 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~-----~-~~~--~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~ 219 (287)
++++.|+.+.+.|++.... . ... + .+++....++++..|....+.....+ ..++++.
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hs 1138 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHS 1138 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcc
Confidence 9999999999999985432 2 111 1 57777888888888877777666655 2344443
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.98 E-value=0.62 Score=38.78 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh-----
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----- 123 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----- 123 (287)
.....+...+.+....|+++.|...+.++....+... ...+....+.+.-..|+..+|+..++..+.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 3456788899999999999999999999988653110 115666778888999999999999998888322111
Q ss_pred -h-hcCCC-h--hHH-HHHHHHHhhhcCCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 124 -A-FNGKP-T--KTA-RSHGKKFQVTVKQETSRILGNLGWAYMQK------GNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 124 -~-~~~~~-~--~~a-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
. ..... . ... ..... .........++..+|...... +..+++...|+++++.+|.....| .+|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLD---KESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhccccccccccccchh---hhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 00000 0 000 00000 000011356778888888888 899999999999999999987776 5666
Q ss_pred HHH
Q 023081 191 CLI 193 (287)
Q Consensus 191 ~~~ 193 (287)
.+.
T Consensus 301 ~~~ 303 (352)
T PF02259_consen 301 FND 303 (352)
T ss_pred HHH
Confidence 554
No 302
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.98 E-value=0.43 Score=42.97 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A 168 (287)
.+-.+++-|...|+++.|.++|.++=.....-+.| ....+.++-.....+ ..|+ ....+...+.-+-+.|+|.+|
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhh
Confidence 46667888888999999999887764433322333 122333333332221 2233 234455555555566666554
Q ss_pred -------------HHHHHHH------Hh----hCCCc-hHH-HHHHHHHHhccCHHHHHHHHHHH
Q 023081 169 -------------EVVYRKA------QL----IDPDA-NKA-CNLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 169 -------------~~~~~~a------l~----~~~~~-~~~-~~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
++.|++. +. ..|+. ... ..+|.-+...|+.++|...|-++
T Consensus 844 eqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 844 EQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 4444432 11 12222 111 15677777778887777666543
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.83 E-value=0.081 Score=44.90 Aligned_cols=126 Identities=13% Similarity=0.135 Sum_probs=85.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 108 (287)
.+..||.-.|-+....++...|..+......+.++...|+|+.|...+..+-..-.... .....+-......|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHHH
Confidence 35578888888888888888888888888888999999999998887765543322111 1222333344566888888
Q ss_pred HHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 109 IELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 109 ~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
.......+...-. ++++...-+......|-+++|..++++.+.++|..
T Consensus 377 ~s~a~~~l~~eie--------------------------~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIE--------------------------DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccC--------------------------ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8877766553221 34444444455556677788888888888777654
No 304
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.82 E-value=0.18 Score=35.79 Aligned_cols=82 Identities=12% Similarity=0.010 Sum_probs=56.1
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
............++++++...+...--+.|+.+.....-|.++...|++.+|+.+++...+..+..+ ..--.++.++.
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p--~~kAL~A~CL~ 89 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP--YGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch--HHHHHHHHHHH
Confidence 3444455556677888888888776677788888888888888888888888888888777665544 22233444555
Q ss_pred HcCC
Q 023081 101 KCGR 104 (287)
Q Consensus 101 ~~g~ 104 (287)
..|+
T Consensus 90 al~D 93 (153)
T TIGR02561 90 AKGD 93 (153)
T ss_pred hcCC
Confidence 4454
No 305
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.15 Score=44.84 Aligned_cols=97 Identities=8% Similarity=0.071 Sum_probs=76.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
+.+.+-|.-.+...+|..++++|...+..-|.+ ......++.||....+.+.|.++++++-+.+|.++.. ..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~--q~ 432 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC--QL 432 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH--HH
Confidence 345666777788899999999999999876654 4556789999999999999999999999999987733 33
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.+-.+....|.-++|+.+..+....
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3344555668889999888776654
No 306
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.72 E-value=1.1 Score=42.17 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch----hh-h-
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH----GE-A- 124 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~-~- 124 (287)
+.+.+|..+|.+..+.|...+|++.|-++ +++ ..+....+...+.|.|++-+.++..+.+.... +. .
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp--s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~ 1174 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP--SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF 1174 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc--HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH
Confidence 34688999999999999999999998764 233 35556667778889999999998887765331 11 0
Q ss_pred -h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHH
Q 023081 125 -F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 125 -~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A 201 (287)
| ......+.+++ -..|+.+. ....|.-.+..|.|+.|.-.|... .-| .|+..+..+|+|+.|
T Consensus 1175 AyAkt~rl~elE~f------i~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEF------IAGPNVAN-IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHhchHHHHHHH------hcCCCchh-HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHH
Confidence 1 01111111211 12343333 445788888889998887777543 123 788999999999999
Q ss_pred HHHHHHHHhc
Q 023081 202 RSVLEDVLLG 211 (287)
Q Consensus 202 ~~~~~~~l~~ 211 (287)
...-+++-+.
T Consensus 1240 VD~aRKAns~ 1249 (1666)
T KOG0985|consen 1240 VDAARKANST 1249 (1666)
T ss_pred HHHhhhccch
Confidence 9988887655
No 307
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.70 E-value=0.024 Score=43.18 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=51.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...+.++.+.|.+.|.+++++.|. ....|+.+|....+.|+++.|...|.+.++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~--------------------------w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPE--------------------------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCch--------------------------hhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 345668888888888888877664 788899999999999999999999999999
Q ss_pred hCCCch
Q 023081 178 IDPDAN 183 (287)
Q Consensus 178 ~~~~~~ 183 (287)
++|.+.
T Consensus 58 ldp~D~ 63 (287)
T COG4976 58 LDPEDH 63 (287)
T ss_pred CCcccc
Confidence 999874
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.59 Score=34.30 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=26.4
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+.+..++|+..|..+-+-.-.....-.....+.+..+.|+...|+..|..+-.-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344555566555554433222111123344455555666666666666655443
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.58 E-value=0.16 Score=43.30 Aligned_cols=88 Identities=14% Similarity=0.041 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHH
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSR 150 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (287)
.-...|+.+....+.+. .+|........+.+.+.+-...|.+++...| +++.
T Consensus 89 rIv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp--------------------------~~~d 140 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP--------------------------NNPD 140 (568)
T ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhCC--------------------------CCch
Confidence 34456666666666555 5666655555555556666666766555544 4788
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCchHHH
Q 023081 151 ILGNLGWAYMQKGN-YTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 151 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+|..-|...+..+. .+.|...|.+++..+|+.+..|
T Consensus 141 LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 141 LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 88777777666665 7888888888888888887665
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.52 E-value=1 Score=36.30 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=98.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchh------------hh
Q 023081 29 QLVEKDPEAAIVLFWKAINAG----DRV----DSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSK------------QA 87 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~------------~~ 87 (287)
.+.+|+.+.|..++.++-... |+. ....++.|......+ +++.|..+++++.+..+. ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999886543 332 456778888888889 999999999999887311 12
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...+...++.+|...+.++...++. .+++. .....|+.+.++...-.+....++.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~-~~l~~----------------------l~~e~~~~~~~~~L~l~il~~~~~~~~ 139 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKAL-NALRL----------------------LESEYGNKPEVFLLKLEILLKSFDEEE 139 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHH-HHHHH----------------------HHHhCCCCcHHHHHHHHHHhccCChhH
Confidence 2346778888888888765443322 22221 112234455555444444445788888
Q ss_pred HHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.+.+.+++..-+-....+ +...-+.. .....|...+...+...
T Consensus 140 ~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r 187 (278)
T PF08631_consen 140 YEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNR 187 (278)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHH
Confidence 8888888887543221112 11111222 23456666666666554
No 311
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.46 E-value=0.5 Score=42.60 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=11.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~a 175 (287)
-...|.+.|+|.+|...-.+.
T Consensus 797 ai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 797 AIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHHHhccccHHHHHHHHHHh
Confidence 344555666666665554443
No 312
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.46 E-value=0.46 Score=31.94 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=55.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 59 MAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDLYKKCG----RLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 59 la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+|.-++..|++-+|+++.+.++..++++. | -+....|.++.... +.+-=..++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~s----------------- 63 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGS----------------- 63 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHh-----------------
Confidence 46778899999999999999999887653 2 24455555543322 111111111111
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 178 (287)
.+.+.+ +..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 64 -ve~~s~-a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 64 -VECFSR-AVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -HHHHHH-HhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 111111 33444445556666666555555566666666665543
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.44 E-value=1.4 Score=37.55 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.++.+|+|.++.-+-.=..++.| ++.++..+|.++....+|.+|..++...
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP---------------------------S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP---------------------------SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC---------------------------cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34556666666665555444544 7999999999999999999999999864
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.40 E-value=0.4 Score=34.12 Aligned_cols=65 Identities=18% Similarity=0.137 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..+..+...-...++.+++...+..+.-+.|+.+ .+...-|.++...|+|.+|+..|+...+..+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3445555555668999999999999999999887 6777778899999999999999998776654
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.33 E-value=2.1 Score=38.79 Aligned_cols=167 Identities=14% Similarity=0.067 Sum_probs=107.4
Q ss_pred chHHHHhHHhHH-hhCCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh---hhH
Q 023081 19 DSPYVRAKHVQL-VEKDPEAAIVLFWKAINAGDR--V----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK---QAQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~ 88 (287)
...++.+|.+++ ...+++.|..++++++.+... . ..+...++.++.+.+... |...+++.++.... ..|
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 456788999987 678999999999999876633 2 234556788888888777 99999999887543 334
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHH
Q 023081 89 ESLDNVL-IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 89 ~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~ 166 (287)
......+ ...+...+++..|++.++........ ..+|. ...+....+.++...+..+
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~---------------------~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQ---------------------RGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhh---------------------cCCHHHHHHHHHHHHHHHhcCCCch
Confidence 3343333 44444448999999999988776320 00000 1223344567777888888
Q ss_pred HHHHHHHHHHhhCC------Cc--h--HHH-HH--HHHHHhccCHHHHHHHHHH
Q 023081 167 SAEVVYRKAQLIDP------DA--N--KAC-NL--SHCLIKQARYTEARSVLED 207 (287)
Q Consensus 167 ~A~~~~~~al~~~~------~~--~--~~~-~l--~~~~~~~g~~~~A~~~~~~ 207 (287)
++++..+++..... +. + .++ .+ -.+....|+++.+...+++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~ 250 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQ 250 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888754221 11 1 122 22 2244667777666665544
No 316
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.31 E-value=0.37 Score=41.25 Aligned_cols=87 Identities=10% Similarity=0.032 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 023081 37 AAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQK 115 (287)
Q Consensus 37 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a 115 (287)
.-...|+.+....+.++..|........+.+.+.+-..+|.+++..+|+++ .+|..-+.-.+.-+. .+.|...|.++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 345678888888888888898888888888889999999999999999888 777777766666565 88889999999
Q ss_pred Hhccchhhhh
Q 023081 116 LRMIYHGEAF 125 (287)
Q Consensus 116 l~~~~~~~~~ 125 (287)
+..+|+.+..
T Consensus 167 LR~npdsp~L 176 (568)
T KOG2396|consen 167 LRFNPDSPKL 176 (568)
T ss_pred hhcCCCChHH
Confidence 9998865544
No 317
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.14 E-value=0.11 Score=41.57 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
..+.-..+.|+.++|..+|+.++++.|. ++.++..+|......++.-+|-.+|-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~--------------------------~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPT--------------------------NPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCC--------------------------CHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 3444456678888888888887777654 89999999999999999999999999
Q ss_pred HHHhhCCCchHHH
Q 023081 174 KAQLIDPDANKAC 186 (287)
Q Consensus 174 ~al~~~~~~~~~~ 186 (287)
+++.++|.+..+.
T Consensus 175 ~ALtisP~nseAL 187 (472)
T KOG3824|consen 175 KALTISPGNSEAL 187 (472)
T ss_pred eeeeeCCCchHHH
Confidence 9999999886553
No 318
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.12 E-value=1.2 Score=36.19 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-------------
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS------------- 84 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p------------- 84 (287)
...+-+.+-+..+...+...-++.-..+++++|..+.++..+|.-- .--..+|...++++++...
T Consensus 183 ~~r~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~ 260 (556)
T KOG3807|consen 183 FLRPEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQS 260 (556)
T ss_pred ccChHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 3344445555556666666666666667777776666666655422 1223444444444433211
Q ss_pred ----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 85 ----------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 85 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+....+-..++.+..++|+..+|++.++...+-.|.
T Consensus 261 ~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 261 PQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred cchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 0011223455666777777777777777776666553
No 319
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.04 E-value=0.12 Score=27.03 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVV--YRKAQLIDPD 181 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~~~ 181 (287)
+.++.+|..+..+|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4577788889999999999999 4466666654
No 320
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.04 E-value=1.9 Score=36.68 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-------------hHHH---HHHHHHHhccCHHHHHHHHHHHH
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA-------------NKAC---NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------------~~~~---~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|..+.+....|...++.+++++|++.+......-.+. ...+ ..+.++..+|++.+++.++++.+
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 3455666666777777777777777665544321110 1111 35677777777777777777776
Q ss_pred hcc
Q 023081 210 LGK 212 (287)
Q Consensus 210 ~~~ 212 (287)
..-
T Consensus 156 ~~l 158 (549)
T PF07079_consen 156 ERL 158 (549)
T ss_pred HHH
Confidence 654
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.99 E-value=0.24 Score=30.90 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..-|.-++...+..+|+..++++++..++.+..+ .+..++...|++.+.+.+--.-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667799999999999999999988877665 6788899999999999887666554
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.99 E-value=0.044 Score=26.22 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+...+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777776654
No 323
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.89 E-value=0.56 Score=32.77 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 53 DSALKDMAVVLKQQD---RVDEAVEAIKSFRH-LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 53 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+..+++|+++.... +..+.+.+++..+. -.|... -+..+.++..+.+.++|++++.+.+..++..|+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r-Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR-RECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc-hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 467778888887664 45677788888876 344322 145666777778888888888888888887764
No 324
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=1.8 Score=37.93 Aligned_cols=145 Identities=18% Similarity=0.081 Sum_probs=77.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc-----CC----------------CCHHH---HHHHHHHHHHcC
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA-----GD----------------RVDSA---LKDMAVVLKQQD 67 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~~----------------~~~~~---~~~la~~~~~~g 67 (287)
+...|.+.+.++.++.+...+||.+.|..+.++++=. .| .+-.. ++..-..+.+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4455777777788888888888877777777666511 11 11111 111222334557
Q ss_pred CHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcC
Q 023081 68 RVDEAVEAIKSFRHLCSK-QAQESLDNVLIDLY-KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVK 145 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~~p~-~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (287)
-+.-|.++.+-.+.++|. ++. ....+.++| .+..+|+=-++.++..-..+ .+..-
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl--~~l~~ID~~ALrareYqwiI~~~~~~e~~n---------------------~l~~~ 413 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPL--GILYLIDIYALRAREYQWIIELSNEPENMN---------------------KLSQL 413 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCch--hHHHHHHHHHHHHHhHHHHHHHHHHHHhhc---------------------cHhhc
Confidence 777777777777777775 552 222233333 34445554444444332221 12233
Q ss_pred CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Q 023081 146 QETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDP 180 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 180 (287)
|+-+. -..++..|..... -..|+..+.+|+...|
T Consensus 414 PN~~y-S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 414 PNFGY-SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CCchH-HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 33222 2335555665555 5677778888877666
No 325
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.83 E-value=0.24 Score=32.48 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDR---------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.+..||+..|++.+.+.+..... ...+..++|.++...|++++|+..+++++++..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45567777777776666543211 134556677777777777777777777776644
No 326
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.77 E-value=0.25 Score=47.02 Aligned_cols=146 Identities=14% Similarity=0.014 Sum_probs=107.0
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--- 82 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 82 (287)
..|+....|..++.++...+++++|+..-.++.-.. |+....+.+++...+..++...|+..+.++...
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 467788889999999999999999999987775332 556778889999999999999999999988765
Q ss_pred --chhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 83 --CSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 83 --~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.|+++. ......+..++...++++.|+++.+.|.+.... + .....-.....+..++.++
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~---v---------------~g~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK---V---------------LGPKELETALSYHALARLF 1109 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh---h---------------cCccchhhhhHHHHHHHHH
Confidence 222221 134566777777889999999999999885431 0 0001111455667778888
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 023081 160 MQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 160 ~~~g~~~~A~~~~~~al~ 177 (287)
...+++..|+...+....
T Consensus 1110 ~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhHHHHHHHHHHhhHHH
Confidence 888888888777776654
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.77 E-value=0.058 Score=25.79 Aligned_cols=21 Identities=29% Similarity=0.191 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 023081 56 LKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~ 76 (287)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444444444444443
No 328
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.69 E-value=2.7 Score=36.68 Aligned_cols=148 Identities=9% Similarity=-0.001 Sum_probs=98.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
-+-|+.+|.+.++|+.+-+.+..+ -+++....|++.+...|..+.+|...........+++.-...|.+++..--+-
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnl-- 86 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNL-- 86 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH--
Confidence 457889999999999998887776 89999999999999999999999999999999999999999999987653332
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH--------
Q 023081 89 ESLDNVL-IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY-------- 159 (287)
Q Consensus 89 ~~~~~~l-~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~-------- 159 (287)
.+|... ..+-...|+...+....-++....-. .+..++.+..+|...+..+
T Consensus 87 -DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~-------------------kig~di~s~siW~eYi~FL~~vea~gk 146 (656)
T KOG1914|consen 87 -DLWKLYLSYVRETKGKLFGYREKMVQAYDFALE-------------------KIGMDIKSYSIWDEYINFLEGVEAVGK 146 (656)
T ss_pred -hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHH-------------------HhccCcccchhHHHHHHHHHccccccc
Confidence 233222 11223344444444444444333111 2223344444555444433
Q ss_pred -HHcCCHHHHHHHHHHHHhhC
Q 023081 160 -MQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 160 -~~~g~~~~A~~~~~~al~~~ 179 (287)
..+.+.+.-...|++++...
T Consensus 147 ~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 147 YEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCc
Confidence 23346667778888888643
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.69 E-value=0.15 Score=43.40 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=83.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+.+.++.+.|.++......+.++...|+|+.+...+..+-..-.....+...+-......|++++|.....-.+.-.-+
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 35678899999999999999999999999999999886654433333355566666777889999998888777654333
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++ ++...-+......|-++++.-.+++.+.++|
T Consensus 390 ~~--ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 390 DE--EVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred Ch--hheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 33 2333333333455788999999999999877
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.57 E-value=0.39 Score=33.54 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=57.0
Q ss_pred CchHHHHhHHhHHhhC---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 18 GDSPYVRAKHVQLVEK---DPEAAIVLFWKAIN-AGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.....++++.+..... +..+.+..++..++ ..|. .-+..+.||..+++.++|++|+.+.+..++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3456678888877654 56778999999986 4443 356788999999999999999999999999999886
No 331
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=2 Score=34.26 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHH------------------
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDR--------VDSALKDMAVVLKQQDRVDEAVEAI------------------ 76 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~------------------ 76 (287)
..+++-....+++++|+..|.+.+..+-. .-.+...++.+|...|++..--+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56778888899999999999999876311 2356778899999988754333222
Q ss_pred -HHHHHhchh---h---h---------H----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 77 -KSFRHLCSK---Q---A---------Q----------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 77 -~~~~~~~p~---~---~---------~----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
+..++..|. + . | ..+-..++.++.+.|.|.+|+......+.-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElK---------- 156 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELK---------- 156 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH----------
Confidence 222222221 0 0 0 01222345566666677666666554443211
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHH-H--HHHHHHHhccCHHHHH
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID-----PDANKA-C--NLSHCLIKQARYTEAR 202 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~-~--~l~~~~~~~g~~~~A~ 202 (287)
...-.|+-..++..-..+|....+..++...+..|-... |....+ . .-|.....-.+|.-|.
T Consensus 157 ----------k~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~ 226 (421)
T COG5159 157 ----------KYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTAS 226 (421)
T ss_pred ----------hhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHH
Confidence 122233345555555666666666666555554443221 111111 1 1244445566677777
Q ss_pred HHHHHHHhcccCCCCch
Q 023081 203 SVLEDVLLGKLSGSTET 219 (287)
Q Consensus 203 ~~~~~~l~~~~~~~~~~ 219 (287)
.+|-++++.......+.
T Consensus 227 SYF~Ea~Egft~l~~d~ 243 (421)
T COG5159 227 SYFIEALEGFTLLKMDV 243 (421)
T ss_pred HHHHHHHhccccccchH
Confidence 77777777654444444
No 332
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.37 E-value=0.79 Score=40.59 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
-+.-.++..+|..++++|...+...+... .+.........++.||....+.+.|.+++++
T Consensus 360 ~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~--------------------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~E 419 (872)
T KOG4814|consen 360 TAKKLFKMEKYVVSIRFYKLSLKDIISDN--------------------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQE 419 (872)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccchh--------------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455777889999999998888776311 0111255677899999999999999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|-+.+|.++-.- .+..+....|.-++|+..........
T Consensus 420 AE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 420 AEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999886553 56667777888999999888776653
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.35 E-value=0.75 Score=34.65 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred hHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh--hHHHHHHHHHHHHHHcCC
Q 023081 28 VQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--AQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~~~l~~~~~~~g~ 104 (287)
.++.+-.-+.|...|-++-... -++++..+.||..|. ..+.++++..+.+++++.+.+ .-..+...++.+|...|+
T Consensus 115 y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 115 YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3466645677888886654332 245778888888776 678999999999999986533 222788899999999999
Q ss_pred HHHHHH
Q 023081 105 LDEQIE 110 (287)
Q Consensus 105 ~~~A~~ 110 (287)
++.|.-
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 998853
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.35 E-value=1.5 Score=32.28 Aligned_cols=130 Identities=16% Similarity=0.077 Sum_probs=71.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVLIDL 98 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l~~~ 98 (287)
|..+.-.-..+..++|+..|...-+.+-. ..-+....|.+..+.|+...|+..|..+-.-.|--. .-.....-+.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 33444445567777777777665554422 244566777788888888888888887765544211 11122233444
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+...|-|+.-....+.. +...+|--..+.-.||..-++.|++.+|..+|.+...
T Consensus 142 LvD~gsy~dV~srvepL-------------------------a~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPL-------------------------AGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhc-------------------------cCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 44555554443322211 2222333445555566666666666666666666554
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.28 E-value=0.11 Score=27.47 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
.++..||.+-...++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 456778888888889999988888888753
No 336
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.14 E-value=0.29 Score=42.17 Aligned_cols=103 Identities=14% Similarity=-0.025 Sum_probs=82.0
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ---DRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
...+-+..-|.-.+..+....|+..|.+++...|.....+.+.|.++.+. |+.-.|+.-.-.+++++|... .++.
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--kah~ 449 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--KAHF 449 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--HHHH
Confidence 33444455555556667788999999999999999988888988888776 466667777777788888765 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.++.++...+++.+|+++...+....|.
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Pt 477 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPT 477 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence 8999999999999999998888877773
No 337
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.97 E-value=0.15 Score=27.00 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=16.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhc
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINA 48 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 48 (287)
.+..+|.+.+..++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555566666666666666666655543
No 338
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.91 E-value=0.38 Score=37.95 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
-..+...++++.|....++.+..+|.++.-+.-.|.+|.+.|.+.-|++-++..++..|+.+
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34455666777777777777777777766677777777777777777777777777776654
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.90 E-value=0.29 Score=25.53 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~ 75 (287)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.86 E-value=0.31 Score=26.79 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.+|.+|...|+.+.|.+.+++++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 45677777777777777777777643
No 341
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.58 E-value=0.21 Score=40.06 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=70.5
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKD-MAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+++.....|+++..|..-+......+-+.+--..|.+++...|.+++.|.. -+.-+...++++.+...|.++++.+|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3455667789999999888888888899999999999999999999998886 566778889999999999999999998
Q ss_pred hh
Q 023081 86 QA 87 (287)
Q Consensus 86 ~~ 87 (287)
.+
T Consensus 175 ~p 176 (435)
T COG5191 175 SP 176 (435)
T ss_pred Cc
Confidence 76
No 342
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.54 E-value=2.9 Score=32.77 Aligned_cols=59 Identities=7% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQ-QDRVDEAVEAIKSFR 80 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~ 80 (287)
+..++++....++|++.+.+..+++..++.. .+-...++.+|.. .|....+...+....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 5678888888999999999999988887654 3445556666632 344444444444433
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.39 E-value=6.7 Score=36.46 Aligned_cols=170 Identities=14% Similarity=0.038 Sum_probs=98.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh---HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~~ 93 (287)
-.+.+...+..+...|..++|+.+.-.| .+|.. .....+.+.-+...++..- +...+..-|... ...+..
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvl 419 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVL 419 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHH
Confidence 3566777777778888888888765332 22322 2223334444555555443 333333334321 003444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+-......++.+|..+..++...-+..+.. .+.. .....-..|.+....|++++|++..
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l------------------~ae~~aL~a~val~~~~~e~a~~la 481 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDL------------------LAEFQALRAQVALNRGDPEEAEDLA 481 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhH------------------HHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 45556667789999999888876654421100 0000 1233334566677778888888888
Q ss_pred HHHHhhCCCchHH------HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLIDPDANKA------CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.++..-|..... ..+|.+..-.|++++|..+..++.+.
T Consensus 482 r~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 482 RLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 8887766654211 16777777788888888777776665
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.37 E-value=0.6 Score=37.32 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..++..++..+...|+++.++..+++.+..+|-+- ..+..+...|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 45677789999999999999999999999999765 68888899999999999999999987664
No 345
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=4.3 Score=34.17 Aligned_cols=141 Identities=16% Similarity=0.138 Sum_probs=90.9
Q ss_pred hHHHH-hHHhHH-hhCCHHHHHHHHHHHHhcC----CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch----
Q 023081 20 SPYVR-AKHVQL-VEKDPEAAIVLFWKAINAG----DR-----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---- 84 (287)
Q Consensus 20 ~~~~~-lg~~~~-~~~~~~~A~~~~~~al~~~----~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---- 84 (287)
++|.+ ++.+++ .++++.+|...-...+..- -. .+..|+.+..+|...|+...-...+...+....
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 44433 333333 3578888887766654321 11 144577778888888886666555555544321
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
......+.+.+-..|...+.|+.|-....+.. .|. ...+.+.+..++.+|.+..-+++
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe--------------------~~snne~ARY~yY~GrIkaiqld 262 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPE--------------------AASNNEWARYLYYLGRIKAIQLD 262 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--Ccc--------------------ccccHHHHHHHHHHhhHHHhhcc
Confidence 12233467777778888888888877665543 121 01111246678889999999999
Q ss_pred HHHHHHHHHHHHhhCCCc
Q 023081 165 YTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~ 182 (287)
|..|.++|-+|+...|.+
T Consensus 263 YssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 263 YSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHHHhCcch
Confidence 999999999999999975
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.25 E-value=0.49 Score=35.61 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=48.0
Q ss_pred hhcCC--CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 023081 12 VHKLP--PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR----VDSALKDMAVVLKQQDRVDEAV 73 (287)
Q Consensus 12 l~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~ 73 (287)
++..| ++++..+.+|-.|. +.|.++++.++-+++++.+. +++++..|+.++...|+++.|-
T Consensus 132 ~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 132 LEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44455 35566666766655 67999999999999987633 4899999999999999999874
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.23 E-value=4.6 Score=34.98 Aligned_cols=49 Identities=12% Similarity=0.160 Sum_probs=23.8
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
+....+++++++....+.. ++-|.. ..-...++..+.+.|..+.|+...
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc
Confidence 4456678888877766421 222322 234556677777778777777643
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.23 E-value=2.3 Score=40.28 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=65.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHH----HcCC---HHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYK----KCGR---LDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~----~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..++.....|++|+..|++.....|.... .++....|.... ..|+ +++|+..|+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 543 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFS------------------ 543 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHH------------------
Confidence 35666677788888888888887774320 022333333322 2222 333333333
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.+...|.-|--|...|.+|.+.|++++=++.|.-+++..|++|..
T Consensus 544 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 544 ---------YLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred ---------HhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 344445556668888999999999999999999999999988755
No 349
>PF12854 PPR_1: PPR repeat
Probab=93.15 E-value=0.21 Score=25.65 Aligned_cols=25 Identities=48% Similarity=0.663 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
..+..+...|.+.|+.++|.+.|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677777788888888888887765
No 350
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.08 E-value=0.77 Score=38.55 Aligned_cols=84 Identities=11% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcC--------CC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAG--------DR-----V-----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~--------~~-----~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
..++.+++|..|..-|..++++- |. + ..+-..|..||...++.+-|+...-+.+.++|...
T Consensus 184 s~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f- 262 (569)
T PF15015_consen 184 SSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF- 262 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-
Confidence 34455566666666666555432 11 1 12234689999999999999999999999999765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELL 112 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~ 112 (287)
.-....+.++....+|.+|...+
T Consensus 263 -rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 -RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333455666777777776643
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.06 E-value=1.4 Score=27.64 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..-|.-++...+.++|+..++++++..++.. .+.+...+..+|...|+|.+++++-.+-+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677778888888888887755432 2245566677778888888887765554443
No 352
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.05 E-value=1.4 Score=34.77 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHHHHcC
Q 023081 34 DPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ----ESLDNVLIDLYKKCG 103 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~g 103 (287)
.....++++.+|+...... ......+|..|...|++++|+.+|+.+........| ..+...+..++...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445667777776543221 344557899999999999999999999665543322 245666778888889
Q ss_pred CHHHHHHHHHHHH
Q 023081 104 RLDEQIELLKQKL 116 (287)
Q Consensus 104 ~~~~A~~~~~~al 116 (287)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 8888877655443
No 353
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.90 E-value=0.98 Score=36.13 Aligned_cols=63 Identities=11% Similarity=0.113 Sum_probs=56.9
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|+++-..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345567788888999999999999999999999999999999999999999999999998664
No 354
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.58 E-value=0.72 Score=37.00 Aligned_cols=62 Identities=21% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
|..+|.+|+.+.|.....+..+|.++...|+.-.|+-+|-+++......+ .+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~--~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFP--SARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--H--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888888875432222 344555555444
No 355
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.56 E-value=4.4 Score=32.20 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=102.8
Q ss_pred hhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHHHHc
Q 023081 31 VEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDNVLIDLYKKC 102 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~ 102 (287)
...++++|+..|++++++.+.. ..++..+..+++++|++++-.+.|.+.+..-...+ .....+.+-+.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3458999999999999988765 34567788899999999999999988876532110 000111111111122
Q ss_pred CCHHHHHHHHHHHHhcc---chhhhhc------CCC------hhHHHHHHHHHh----hhc-------CCCcHHHHHHHH
Q 023081 103 GRLDEQIELLKQKLRMI---YHGEAFN------GKP------TKTARSHGKKFQ----VTV-------KQETSRILGNLG 156 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~---~~~~~~~------~~~------~~~a~~~~~~~~----~~~-------~~~~~~~~~~lg 156 (287)
.+.+--...|+..+..- .+...|. |+. +......++.+. ... ...-.+++..-.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 33333333343333321 1111111 111 111111111110 000 011234555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-------HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-------NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|..+.+-.+-...|.+++.+...-|... .=|..+.+.|++++|..-|-++.+.+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 678888888888888999988765543332 12455678899999998888888876
No 356
>PF12854 PPR_1: PPR repeat
Probab=92.23 E-value=0.49 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
+..+|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 567788888888888888888888875
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.20 E-value=1.3 Score=35.40 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
..+...+..|...|.+.+|.++.++++..+|-+...+ .+..++..+|+.-.+...|++..+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667788999999999999999999999998887 788999999999999888876553
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=5.5 Score=31.64 Aligned_cols=70 Identities=17% Similarity=0.055 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+..++=..+...++++.|..+.++.+.++|. ++.-+.-.|.+|.+.|.+.-|+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~--------------------------dp~eirDrGliY~ql~c~~vAl 235 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPE--------------------------DPYEIRDRGLIYAQLGCYHVAL 235 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC--------------------------ChhhccCcHHHHHhcCCchhhH
Confidence 44445555666677777777777766655543 5666666777788888888888
Q ss_pred HHHHHHHhhCCCchHH
Q 023081 170 VVYRKAQLIDPDANKA 185 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~ 185 (287)
+.+...+...|+.+..
T Consensus 236 ~dl~~~~~~~P~~~~a 251 (269)
T COG2912 236 EDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHhCCCchHH
Confidence 8777777777777654
No 359
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=6.5 Score=32.33 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=93.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHh----cC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAIN----AG--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESL 91 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~----~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 91 (287)
..+...|...++|.+|+......+. .+ +.-++++..-..+|+...+..+|...+..+... .|......+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 3566778888999999888776653 22 223566667778888889999988888777543 343332334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhh----hh-----------cCCChhHHHHHHH-HHhhhcCCCcHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----AF-----------NGKPTKTARSHGK-KFQVTVKQETSRILGNL 155 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-----------~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l 155 (287)
-..-|-++....+|..|..+|-++++-+.... +. .-...++....+. +.++.....+..++-..
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 44456677777899999999999988654211 00 0011111111111 11334444455566666
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHhhCC
Q 023081 156 GWAYMQ--KGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 156 g~~~~~--~g~~~~A~~~~~~al~~~~ 180 (287)
+..+.+ ..+|+.|+..|+.-+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 665543 3466666666666554443
No 360
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.72 E-value=9 Score=33.92 Aligned_cols=165 Identities=11% Similarity=0.058 Sum_probs=105.9
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-hhhHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-KQAQESLDNVLIDL 98 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~l~~~ 98 (287)
..|..-.......|+++...-.|++++---......|...+......|+.+-|-..+.++.+..- ..+ .+...-+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHH
Confidence 44555556667889999999999998876667779999999999999999999988888877643 334 344455556
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhh---------hcCCChhHHHHHHHHH-hhhcCCC----cHHHHHHHHHHH-HHcC
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEA---------FNGKPTKTARSHGKKF-QVTVKQE----TSRILGNLGWAY-MQKG 163 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~a~~~~~~~-~~~~~~~----~~~~~~~lg~~~-~~~g 163 (287)
-...|++..|...+++...-.|.-.. +.......+..+...+ ....... ....+...++.. .-.+
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 66778999999999999887763111 1011122222111111 1111111 133334444433 3456
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+.+.|...+.+++...|++-..+
T Consensus 456 d~~~a~~~l~~~~~~~~~~k~~~ 478 (577)
T KOG1258|consen 456 DADLARIILLEANDILPDCKVLY 478 (577)
T ss_pred CHHHHHHHHHHhhhcCCccHHHH
Confidence 77788888888888877775554
No 361
>PF13041 PPR_2: PPR repeat family
Probab=91.64 E-value=1.1 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
+..+|+.+-..+.+.|++++|.+.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 45667778888888888888888888887643
No 362
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=9.3 Score=33.84 Aligned_cols=132 Identities=13% Similarity=-0.007 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 33 KDPEAAIVLFWKAINAGDRVDSALKD--MAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~~~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
+...-++..+...+..+|..+..+.. +...+...+....+.-.+...+..+|++. .....++......|....+..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~ 122 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALA 122 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHH
Confidence 44444666666666777777665333 47777788888888889999999999887 667777766666666655555
Q ss_pred HHHH-HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 111 LLKQ-KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 111 ~~~~-al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.+.. +....|.... .+. +...++.+|......|+..++.....++....|.++...
T Consensus 123 ~~~~~a~~~~~~~~~-----------~~~---------~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 123 DISEIAEWLSPDNAE-----------FLG---------HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred HHHHHHHhcCcchHH-----------HHh---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 4444 4444442100 000 122233368888888888888888888888888875543
No 363
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.39 E-value=5.4 Score=31.72 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhchhhh-H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 67 DRVDEAVEAIKSFRHLCSKQA-Q-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.+.++|+..|++++++.+... | +.+.-.+..+++..|+|++.++.|.+.+....
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk 96 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK 96 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 479999999999999987432 1 23566778899999999999999999887654
No 364
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.36 E-value=8.6 Score=33.02 Aligned_cols=66 Identities=5% Similarity=0.003 Sum_probs=37.0
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
.+.-.|-.+..|+.-.......+|-+.|+...++++...|. ....++.+|....+-+....+|+++
T Consensus 294 ~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~ 359 (660)
T COG5107 294 ILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKC 359 (660)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHH
Confidence 33444555556655555555566666666666555554443 4556666666555555555555444
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=8.2 Score=34.17 Aligned_cols=107 Identities=14% Similarity=0.028 Sum_probs=77.1
Q ss_pred CCCCchHHHH--hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhchhhhH---
Q 023081 15 LPPGDSPYVR--AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKS-FRHLCSKQAQ--- 88 (287)
Q Consensus 15 ~p~~~~~~~~--lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~p~~~~--- 88 (287)
+|.+++.+.. +.......++...+.-.+...+..+|....+..+|+.+....|....+...+.. +....|++..
T Consensus 61 ~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 61 NDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred CCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 4444444322 344455567777888888899999999999999999999888877777766665 6677776641
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 89 -ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 89 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...++.++......|+..++....+++....|.
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~ 174 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPK 174 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence 011222677888888899999888888888774
No 366
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=8.3 Score=32.56 Aligned_cols=103 Identities=10% Similarity=-0.034 Sum_probs=75.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hchhhhHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-----DR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRH--LCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 90 (287)
+..|+++..++...|+...-...+...+... .. .......|-..|...+.|+.|-....++.- ...++-|..
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 4567888888888888666555555444321 22 234455677888889999999888877642 122345668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+.+|.+..-+++|..|.++|.+++...|.
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8889999999999999999999999999985
No 367
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.00 E-value=1.4 Score=35.57 Aligned_cols=84 Identities=11% Similarity=0.025 Sum_probs=67.9
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
....|+++..|...+..-...|-+.+--..|.+++..+|.+.+.| .-+.=+...++++.+..+|.+++..++..+.-|
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 445577899999888888888899999999999999999998888 355666788999999999999999876666666
Q ss_pred hHHHHH
Q 023081 220 KTINRV 225 (287)
Q Consensus 220 ~~~~~~ 225 (287)
-.|-+.
T Consensus 180 ~eyfr~ 185 (435)
T COG5191 180 IEYFRM 185 (435)
T ss_pred HHHHHH
Confidence 444443
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.55 E-value=2.5 Score=32.38 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=54.3
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHH
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLID 97 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~ 97 (287)
..+..+..++|+...+.-++..|.+......+-.++.-.|++++|...++-+-++.|+.. ...+|..+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 346677888999999888899999888888888888899999999999988888888653 2234444433
No 369
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.26 E-value=1.8 Score=37.56 Aligned_cols=89 Identities=12% Similarity=-0.043 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhh
Q 023081 67 DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG---RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~ 143 (287)
+....|+..|.+++...|... .++...+.++.+.+ +.-.|+.-...++ .
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~--~~l~nraa~lmkRkW~~d~~~AlrDch~Al--------------------------r 439 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAI--YLLENRAAALMKRKWRGDSYLALRDCHVAL--------------------------R 439 (758)
T ss_pred HHHHHHHHHHHHHhhhccchh--HHHHhHHHHHHhhhccccHHHHHHhHHhhc--------------------------c
Confidence 456778888888888888765 45555555555443 3333444444444 4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++|-...+|+.|+.++...+++.+|+.....+....|.+.
T Consensus 440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 4444778899999999999999999999988877777553
No 370
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=90.08 E-value=5.1 Score=28.27 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=37.1
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
+...+.+...+.+++..+..++.++..+..+..+|... +..+.++++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34457899999999999988887777888888888765 4556666666
No 371
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.94 E-value=3.2 Score=37.13 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.+++-.|..+.+..+|++|-+.|.+|
T Consensus 804 ~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 455666677777777777777666654
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.75 E-value=10 Score=31.20 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=78.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh----hhh--cCCChh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG----EAF--NGKPTK 131 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----~~~--~~~~~~ 131 (287)
.+-..-++..+..+-++....+++++|+-+ .++..++.- ...-..+|.++|+++++..... ... .+...+
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 333444556667777788888899999866 566666542 3345678888899888864310 000 000000
Q ss_pred HHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH---HHHHHHHhccCHHHH
Q 023081 132 TARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC---NLSHCLIKQARYTEA 201 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~l~~~~~~~g~~~~A 201 (287)
.. ...+.+ -..+-..++.|..++|+..+|.+.++...+..|-..... ||..++..+.-|.+.
T Consensus 265 ---a~-----~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADv 330 (556)
T KOG3807|consen 265 ---AQ-----LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADV 330 (556)
T ss_pred ---hh-----hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111 133456789999999999999999999877666332221 566665555444433
No 373
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.70 E-value=6.4 Score=35.72 Aligned_cols=59 Identities=15% Similarity=0.258 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------------------HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSF----------------------RHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~----------------------~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
.++.++|..+.....+++|.++|... ...-|++. .+.-.+|+++...|.-++|.+.
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s--~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDS--ELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCccc--chHHHHHHHHHhhchHHHHHHH
Confidence 44555555555555555555555433 22234443 4566778888888888888876
Q ss_pred HHH
Q 023081 112 LKQ 114 (287)
Q Consensus 112 ~~~ 114 (287)
|-+
T Consensus 875 ~Lr 877 (1189)
T KOG2041|consen 875 YLR 877 (1189)
T ss_pred HHh
Confidence 654
No 374
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=9.5 Score=30.73 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...++..+|..|.+.++.+.+.++..+.+...-. ....-+-...-..+|.+|..+.-.++
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--------------------tg~KiDv~l~kiRlg~~y~d~~vV~e 173 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--------------------TGLKIDVFLCKIRLGLIYGDRKVVEE 173 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--------------------cccchhhHHHHHHHHHhhccHHHHHH
Confidence 3468999999999999999999999888765321 11111112234567777777777788
Q ss_pred HHHHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 168 AEVVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
.++..+..++...+-... + ..|.-.....++.+|...+...+... .+...-+|.++..
T Consensus 174 ~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF--~S~El~sY~~~vr 235 (412)
T COG5187 174 SLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF--ESSELISYSRAVR 235 (412)
T ss_pred HHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc--cccccccHHHHHH
Confidence 888888888776665332 2 56777777888999999998888763 4444444555443
No 375
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=12 Score=31.61 Aligned_cols=78 Identities=8% Similarity=0.019 Sum_probs=58.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHh------------hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLV------------EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--VDEAVEA 75 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~------------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~ 75 (287)
.+++.+|+....|...-.++.. ..-.++-+.+...++..+|+.-.+|+....++.+.+. +..=+..
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~l 133 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQL 133 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3667788777777554433322 2245666778888899999999999999999988774 6788889
Q ss_pred HHHHHHhchhhh
Q 023081 76 IKSFRHLCSKQA 87 (287)
Q Consensus 76 ~~~~~~~~p~~~ 87 (287)
.+++++.+|.+.
T Consensus 134 cek~L~~D~RNf 145 (421)
T KOG0529|consen 134 CEKALKQDPRNF 145 (421)
T ss_pred HHHHHhcCcccc
Confidence 999999999764
No 376
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=89.33 E-value=0.74 Score=22.46 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
++.+...|.+.|++++|.+.|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45566666777777777777766554
No 377
>PF13041 PPR_2: PPR repeat family
Probab=89.19 E-value=2.2 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 45555666666666666666666666544
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.78 E-value=15 Score=31.90 Aligned_cols=81 Identities=16% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
...++..+..+|-++.|+..- .++...+.||. +.|+++.|.+..++. ++. ..|..+|.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLAl---~lg~L~~A~~~a~~~-----~~~--~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELAL---QLGNLDIALEIAKEL-----DDP--EKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHHH---HCT-HHHHHHHCCCC-----STH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHHH---hcCCHHHHHHHHHhc-----CcH--HHHHHHHHHHHH
Confidence 445566667777777776653 33456666654 678888887755432 233 578888888888
Q ss_pred cCCHHHHHHHHHHHHhccc
Q 023081 102 CGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~~ 120 (287)
+|+++-|.++|+++-....
T Consensus 360 ~g~~~lAe~c~~k~~d~~~ 378 (443)
T PF04053_consen 360 QGNIELAEECYQKAKDFSG 378 (443)
T ss_dssp TTBHHHHHHHHHHCT-HHH
T ss_pred cCCHHHHHHHHHhhcCccc
Confidence 8999988888887765543
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.50 E-value=1.5 Score=21.47 Aligned_cols=27 Identities=19% Similarity=0.091 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMA 60 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la 60 (287)
+++.|...|++++...|..+..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555554443
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.42 E-value=3.2 Score=33.29 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
......+..|...|.+.+|+++.++++.++|-+. ..+..+..++...|+--.+++.|++.-+.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e--~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE--QDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 3455667888999999999999999999999654 46666777778889988888877766543
No 381
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.33 E-value=18 Score=32.18 Aligned_cols=124 Identities=9% Similarity=0.009 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
...|..........|+++...-.|++++--..... .+|...+......|+.+-|...+..+.++.-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------ 362 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWMESSGDVSLANNVLARACKIHV------------ 362 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------
Confidence 44566677777888999999999999976555444 6777777777777988888888887776532
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARS 203 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~ 203 (287)
|..+.+...-+..-...|++..|...+++..+.-|+...+ ..-......+|+.+.+..
T Consensus 363 -------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 363 -------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 3356666777777778889999999999888877776554 345556667777777763
No 382
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=88.33 E-value=0.94 Score=22.04 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=17.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566667777777777777766544
No 383
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.03 E-value=1.2 Score=37.76 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=42.2
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAG---------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..+.+++...|||..|++.++. +..+ +-....++.+|.+|..+++|.+|+..|...+-.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788999999888743 2332 223566788888888888888888888877543
No 384
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=87.95 E-value=14 Score=30.51 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
-..++.+|...++|.+|+......+.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33567778888888888887666554
No 385
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.66 E-value=4.4 Score=38.48 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=66.7
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQ----D---RVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
....+++..+.|+.|+..|++.-...|.. -++.+.+|.++... | .+++|+..|++... .|..+ --+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~ 556 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAP--LEYL 556 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCc--hHHH
Confidence 34466777888999999999988888765 46777777776543 2 36666666666533 23323 1244
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
-.+.+|...|++++-++++.-+++.+|
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYS 583 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 556688899999999999999999877
No 386
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.55 E-value=20 Score=31.87 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=97.1
Q ss_pred hCCHHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----ch----------
Q 023081 32 EKDPEAAIVLFWKAINA------------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CS---------- 84 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p---------- 84 (287)
...|++|...|.-+... .|.++..+..++.++..+|+.+-|....++++=. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45577788877776643 3667889999999999999988888888777522 12
Q ss_pred ------hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 85 ------KQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 85 ------~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
.+- ..-+.......+.+.|.+..|.++.+-.+.++|.. +|.+...+..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e-------------------------DPl~~l~~ID 385 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSE-------------------------DPLGILYLID 385 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcC-------------------------CchhHHHHHH
Confidence 111 01112223344567799999999999888887731 3333333333
Q ss_pred HH-HHcCCHHHHHHHHHHH-----HhhCCCchHHHHHHHHHHhccC---HHHHHHHHHHHHhcc
Q 023081 158 AY-MQKGNYTSAEVVYRKA-----QLIDPDANKACNLSHCLIKQAR---YTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~-~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~ 212 (287)
.| .+..+|.=-+..++.. +..-|+..-...++..|..... ...|...+.+|+...
T Consensus 386 ~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 386 IYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 32 3445555555555544 3344555444467777766665 466777777777654
No 387
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=87.36 E-value=1.7 Score=21.63 Aligned_cols=28 Identities=43% Similarity=0.557 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.++.+...|.+.|++++|.+.|.++.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 3566777888889999999988887653
No 388
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=87.19 E-value=16 Score=30.22 Aligned_cols=148 Identities=15% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------------------------HHHHHHHHHHHHHhchhhhH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--------------------------VDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--------------------------~~~A~~~~~~~~~~~p~~~~ 88 (287)
-++|+.+-+-...+-|..++++-.++....+..+ .+++...+.+++......++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 3567777777777888888888877777665432 45566666666544321111
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 89 ESLDNVLIDLYKK-----CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 89 ~~~~~~l~~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.+.-.++.++.. .-+|..-..+|+....+.| +|.+-.|.+.......
T Consensus 292 -qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap---------------------------SPvV~LNRAVAla~~~ 343 (415)
T COG4941 292 -QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP---------------------------SPVVTLNRAVALAMRE 343 (415)
T ss_pred -HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC---------------------------CCeEeehHHHHHHHhh
Confidence 122223333222 2244444455554444444 4555666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCc---hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 164 NYTSAEVVYRKAQLIDPDA---NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~---~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
-...++...+..... |.- ..++ --|..+.++|+.++|...|++++..
T Consensus 344 Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 344 GPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 666666666554432 221 1122 4677788888888888888888876
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.14 E-value=4.4 Score=32.43 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
..++.. +..+.|.+...++.+|.++...|+.-.|+-+|-+++......+.+. +|...+.+
T Consensus 2 ~~~Y~~-A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 2 ERYYRK-AIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHH-HHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 445555 7778888888888888888888888888888888876544445444 77766665
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=16 Score=30.05 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++...+..|++.|+-+.|.+.+++..+..- .+...-+-......+|..|....-..+.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktv--------------------s~g~kiDVvf~~iRlglfy~D~~lV~~~i 164 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTV--------------------SLGHKIDVVFYKIRLGLFYLDHDLVTESI 164 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh--------------------hcccchhhHHHHHHHHHhhccHHHHHHHH
Confidence 6788899999999999999999988776532 12222223445567788887776667777
Q ss_pred HHHHHHHhhCCCchHH--H--HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKA--C--NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~--~--~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+-.+..++...+-..- + .-|.-.....++.+|...|-..+...
T Consensus 165 ekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 165 EKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 7777777666554322 2 56777778889999999999888764
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.59 E-value=2.5 Score=30.13 Aligned_cols=47 Identities=19% Similarity=0.060 Sum_probs=22.0
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ 66 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 66 (287)
+..+..++..+..|++.-|..+...++..+|++..+....+.++.+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l 117 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL 117 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555555444443
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=86.45 E-value=15 Score=29.32 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hhCCCchHHH--HHHHHHHhccCHHHHHHHHHHH
Q 023081 147 ETSRILGNLGWAYMQKGNYTSAEVVYRKAQ----------------LIDPDANKAC--NLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
.++..+..+|..+++.|++.+|..+|-..- .-.|.....+ ....-|..+++...|...+...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 379999999999999999999988873211 1223333333 3344456678888888777665
Q ss_pred Hhc
Q 023081 209 LLG 211 (287)
Q Consensus 209 l~~ 211 (287)
.+.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 393
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.87 E-value=2 Score=36.41 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=67.7
Q ss_pred HhhcCCCCchHHHHhHHhH--HhhCCHHHHHHHHHHHH-------hcCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQ--LVEKDPEAAIVLFWKAI-------NAGDRV------DSALKDMAVVLKQQDRVDEAVEA 75 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al-------~~~~~~------~~~~~~la~~~~~~g~~~~A~~~ 75 (287)
+.+.+|+..+.+-.+...+ ..+.+..+-++..+... ..++.. --+...|..++.-.|+|..|++.
T Consensus 65 l~~~~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~ 144 (404)
T PF10255_consen 65 LKENNPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKV 144 (404)
T ss_pred HHhhccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHH
Confidence 3344476666665554443 33445555444444321 011111 12344677888999999999998
Q ss_pred HHHHHHhchh-------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 76 IKSFRHLCSK-------QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 76 ~~~~~~~~p~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++.. +++.. .....+++.+|-+|...++|.+|++.|...+-...
T Consensus 145 l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~ 195 (404)
T PF10255_consen 145 LENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ 195 (404)
T ss_pred hhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 11111 12336788999999999999999999999887544
No 394
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.77 E-value=22 Score=30.68 Aligned_cols=76 Identities=9% Similarity=-0.002 Sum_probs=47.2
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 41 LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 41 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
-++.-|+.+|++...|+.|..-+..+|.+++-.+.+++...-.|--+ .+|.....--....++.....+|-+++..
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~--~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME--HAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc--HHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45566777787777788887777777777777777777776666333 23332222222235666666666666654
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=85.73 E-value=9.8 Score=26.50 Aligned_cols=43 Identities=7% Similarity=0.086 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhC--CCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 167 SAEVVYRKAQLID--PDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 167 ~A~~~~~~al~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
.+.+.|+.+.... ...+..+ ..|..+...|++++|..+|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 5555555554432 2233333 55666666666666666665543
No 396
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=85.23 E-value=2.4 Score=21.01 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
|+.+-..|.+.|++++|...|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666666777777776666554
No 397
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.90 E-value=56 Score=34.51 Aligned_cols=146 Identities=14% Similarity=0.123 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-hh-hcCC
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-EA-FNGK 128 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~-~~~~ 128 (287)
...+.|...|.+.+..|+++.|..++-.+.+..+. .+....|...-..|+-..|+..+++.++.+..+ .. +...
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~ 1743 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDT 1743 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcccc
Confidence 34788999999999999999999999999887754 577788889999999999999999999765321 00 0000
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCchH-HHHHHHHH------------H
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY--TSAEVVYRKAQLIDPDANK-ACNLSHCL------------I 193 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~-~~~l~~~~------------~ 193 (287)
....-... ...+...++......|++ .+-+++|+.+.+..|.... .+.+|.-| .
T Consensus 1744 p~~~n~~i-----------~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1744 PQSVNLLI-----------FKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred chhhhhhh-----------hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc
Confidence 00000000 123344455555555554 4567888999998885433 23444322 2
Q ss_pred hccCHHH---HHHHHHHHHhc
Q 023081 194 KQARYTE---ARSVLEDVLLG 211 (287)
Q Consensus 194 ~~g~~~~---A~~~~~~~l~~ 211 (287)
+.|++.. ++..|.+++..
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~y 1833 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYY 1833 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHh
Confidence 3455555 55556667654
No 398
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=84.28 E-value=5.7 Score=31.39 Aligned_cols=60 Identities=12% Similarity=0.032 Sum_probs=46.6
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD--R----VDSALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
....+|..|+..|++++|+++|+.+....- . ...+...+..|+...|+.+..+.+.-+++
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 346799999999999999999999865432 1 14566678889999999998887765554
No 399
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.62 E-value=7.5 Score=26.80 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhc
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINA 48 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~ 48 (287)
+..+|...+..+++-.++-.|++|+..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 455677777777777777777777653
No 400
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=83.60 E-value=3.7 Score=20.36 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
.+..+...+.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466677778888888888888887665
No 401
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.48 E-value=23 Score=29.00 Aligned_cols=97 Identities=13% Similarity=-0.022 Sum_probs=64.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhh--
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR--------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQA-- 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~-- 87 (287)
.....+|.+|...++|..|...+ .++..+.. ....+..+|.+|...++..+|..+..++-=. +..+.
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L-~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVL-VGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH-hccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 34577999999999999999887 44444421 1345778999999999999999998887322 22222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
....-...+.+.-..+++-+|...|.+...
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333345555566777777666655443
No 402
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.88 E-value=9.9 Score=35.11 Aligned_cols=106 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
.+.+.+..+..+.--...+.-+.-+.-++.-+.+++.....+..|-.+++..|++++-...-..+.++.|..++...-..
T Consensus 75 ~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl 154 (881)
T KOG0128|consen 75 LESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWL 154 (881)
T ss_pred CCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34455555555544445555666677777777888888888889999999999988877777777777776552222111
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHhccc
Q 023081 95 LIDLY-KKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 95 l~~~~-~~~g~~~~A~~~~~~al~~~~ 120 (287)
...++ ...++..++...|++++.-+.
T Consensus 155 ~d~~~mt~s~~~~~v~~~~ekal~dy~ 181 (881)
T KOG0128|consen 155 KDELSMTQSEERKEVEELFEKALGDYN 181 (881)
T ss_pred HHHHhhccCcchhHHHHHHHHHhcccc
Confidence 11222 233778888889999887654
No 403
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=82.22 E-value=4.3 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 151 ILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 151 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|..+..++.+.|+++.|...|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666666666666666544
No 404
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=82.13 E-value=30 Score=29.22 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
..-+|+..++.++...|.+......+..+|...|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3445666666666666666666666666666666666666666544
No 405
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=81.90 E-value=8.9 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.038 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
|.....|...+... ++..++|.-+....-......++...|..+...|++.+|.++|+.
T Consensus 66 ~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 66 PRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 44455666666543 335666776665544333336788889999999999999998874
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.75 E-value=6.6 Score=30.23 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..-+.+.+...+|+...+.-++..|.+. .....+-++++-.|+|++|...++-+-.+.|.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda--~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA--GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc--cchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3456778899999999999999999876 56777788899999999999999998888774
No 407
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.69 E-value=14 Score=31.55 Aligned_cols=97 Identities=12% Similarity=0.013 Sum_probs=63.2
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG-----------DRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFR 80 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~ 80 (287)
++..|++.+....|++|+.++-.|-+.. .+.+-.-..+.+||+...+ ...|...|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 4556778888889999988876654332 2333344456788888765 344444444442
Q ss_pred Hh------------chhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 81 HL------------CSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 81 ~~------------~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.. .|..+ +..+....|.+.+.+|+-++|.++++.+...
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 21 22222 3345667789999999999999999988764
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.37 E-value=32 Score=29.26 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.++..+|.-|...|+++.|+..|-++...+.... ..+++..+..+-...|+|..-..+..++...- .+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~-~~---------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP-DA---------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc-hh----------
Confidence 3455677777777777777777777665544221 11345555555556677766666655554431 00
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.... +... .+.+...-|.+....++|..|..+|-.+..
T Consensus 220 ~~~~----~q~v---~~kl~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 220 NENL----AQEV---PAKLKCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred hhhH----HHhc---CcchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0000 0001 244556667777778899999998876643
No 409
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.82 E-value=19 Score=37.63 Aligned_cols=103 Identities=7% Similarity=0.074 Sum_probs=75.1
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-hh---------
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-SK--------- 85 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~--------- 85 (287)
...++.|...|++....|.++.|-..+-.|.+.. -+.+....|..++..|+...|+..+++.++.+ |+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccc
Confidence 3457889999999999999999999998888766 56789999999999999999999999999663 22
Q ss_pred -hh----HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhccc
Q 023081 86 -QA----QESLDNVLIDLYKKCGRL--DEQIELLKQKLRMIY 120 (287)
Q Consensus 86 -~~----~~~~~~~l~~~~~~~g~~--~~A~~~~~~al~~~~ 120 (287)
.. ...+...++......++. ..-+..|+.+.++.|
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 10 001122233333344442 345567888888777
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.51 E-value=7.3 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=20.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
.++.+...|+. ..+..++.++...|+.++|.....++....|
T Consensus 134 a~~~l~~~P~~-~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 134 AERLLRRRPDP-NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33333334422 4455555555555555555555555555555
No 411
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=30 Score=28.02 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=92.7
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINA----G--DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESLDN 93 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~----~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~ 93 (287)
+...++..|.|.+|+......+.. + +.-..++..-..+|....+..++...+..+... +|......+-.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 455677889999998887665532 2 444667777788888888888888877766543 45443334444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhh----hh-------cCC----ChhHHHHHHHH-Hhhh-cCCCcHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGE----AF-------NGK----PTKTARSHGKK-FQVT-VKQETSRILGNLG 156 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-------~~~----~~~~a~~~~~~-~~~~-~~~~~~~~~~~lg 156 (287)
.-|-+++...+|..|..+|-++++-+..+. +. ..+ ..++....++. ..+. .+.....++...+
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~ava 290 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVA 290 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHH
Confidence 456677788899999999999988654211 10 000 01111111110 0111 2223455566666
Q ss_pred HHHHH--cCCHHHHHHHHHHHHhhCC
Q 023081 157 WAYMQ--KGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 157 ~~~~~--~g~~~~A~~~~~~al~~~~ 180 (287)
..+.. ..+|..|+..|..-+..+|
T Consensus 291 ea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 291 EAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 66543 4577888888877665444
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.34 E-value=38 Score=28.79 Aligned_cols=60 Identities=17% Similarity=0.060 Sum_probs=40.7
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhc-CCCC-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINA-GDRV-DSALKDM--AVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~-~~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
...+...+..++|..|.+.+...... .++. ...+..+ |..++..-++.+|.+.++.....
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777888899998888887764 3322 1234444 44456778888888888887654
No 413
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.44 E-value=36 Score=28.10 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=59.0
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG----D--RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESL 91 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~ 91 (287)
.+++...|..|.+-||-+.|.+.+.+..+.. - +..-....+|..|....-..+.++.....++...++-. ..+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 4667778888888888888888877665432 1 22334456676666655555555555555555444321 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
-...|.......++.+|..+|-.++.-
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 223343444557777777777766654
No 414
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.25 E-value=58 Score=30.28 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCch
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTET 219 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 219 (287)
..++.++.+.|..++-..++.-+.- -.+-.-.+++.+|++.-+...+. .+..|
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~y-----------~~asVLAnd~~kaiqAae~mfKL---k~P~W 400 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVATY-----------FEASVLANDYQKAIQAAEMMFKL---KPPVW 400 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHHh-----------hhhhhhccCHHHHHHHHHHHhcc---CCcee
Confidence 3455556666666655555443321 12223457788888888888776 44555
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.87 E-value=6.6 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=9.8
Q ss_pred cCCHHHHHHHHHHHHHh
Q 023081 66 QDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 66 ~g~~~~A~~~~~~~~~~ 82 (287)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35666666666665544
No 416
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.22 E-value=60 Score=29.35 Aligned_cols=26 Identities=19% Similarity=-0.010 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
|..||++....+++..|.++|.++..
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcc
Confidence 44444444444444444444444433
No 417
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.57 E-value=8.6 Score=23.97 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHHHhcc
Q 023081 103 GRLDEQIELLKQKLRMI 119 (287)
Q Consensus 103 g~~~~A~~~~~~al~~~ 119 (287)
|+|++|+.+|..+++..
T Consensus 20 gny~eA~~lY~~ale~~ 36 (75)
T cd02680 20 GNAEEAIELYTEAVELC 36 (75)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 88999999999998874
No 418
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.29 E-value=17 Score=25.86 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 103 (287)
.+.....+......|++.-|.+....++..+|++. .+....++++...|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~--~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE--EARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHH
Confidence 35566778888899999999999999999999887 66666777666554
No 419
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=74.28 E-value=93 Score=30.60 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh----------hCCCchHH----HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL----------IDPDANKA----CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~----------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+..-|..|...|+.++|+..|+.+.. +.+.-... ..|+.-+..++++-+|.++....++.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 34467778888999999988876542 22222222 25666677788888887777666643
No 420
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=73.96 E-value=9.6 Score=19.10 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=14.0
Q ss_pred HHHHhHHhHHhh----CCHHHHHHHHHHHHh
Q 023081 21 PYVRAKHVQLVE----KDPEAAIVLFWKAIN 47 (287)
Q Consensus 21 ~~~~lg~~~~~~----~~~~~A~~~~~~al~ 47 (287)
+.+.+|..+..- .|..+|+.+|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555554432 255666666655543
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.68 E-value=16 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
++.++.+++.++...|+.++|.....++....|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 566666777777777777777777777776666
No 422
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=72.93 E-value=43 Score=26.17 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHhhCCHHHHHHHHHHHHhcC---CCC---------HHHHHHHHHHHHHcCCH-HHH-HHHHHHHHHh--chhhhHHHHH
Q 023081 29 QLVEKDPEAAIVLFWKAINAG---DRV---------DSALKDMAVVLKQQDRV-DEA-VEAIKSFRHL--CSKQAQESLD 92 (287)
Q Consensus 29 ~~~~~~~~~A~~~~~~al~~~---~~~---------~~~~~~la~~~~~~g~~-~~A-~~~~~~~~~~--~p~~~~~~~~ 92 (287)
.+..|+++.|++....+|+.+ |+. ++-...-+......|+. +-+ ...+..+... -|+.....++
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 356799999999999999877 332 12222334444555552 111 1122222111 2344444567
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhccch
Q 023081 93 NVLIDLYK---------KCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 93 ~~l~~~~~---------~~g~~~~A~~~~~~al~~~~~ 121 (287)
...|..+. ..++...|+.+++++++++|.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 77777763 456788999999999999873
No 423
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=72.73 E-value=77 Score=29.01 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=42.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVL 95 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l 95 (287)
..++.++...|.+.+|.+.|.+.=..+ ... --.+.++.-+...|.-++-....++-.+- +-+.+ ...
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~en-RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaA 709 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHEN-RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAA 709 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchh-hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHH
Confidence 456677777788888888775421110 000 11234455555555555544444332211 11111 123
Q ss_pred HHHHHHcCCHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIEL 111 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~ 111 (287)
+.++...|+.++|+..
T Consensus 710 AEmLiSaGe~~KAi~i 725 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEI 725 (1081)
T ss_pred HHHhhcccchhhhhhh
Confidence 4556667888888773
No 424
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.79 E-value=60 Score=31.80 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+...+.+|.+|...|+..+|+.+|.++..-
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 355667777777888888888877777654
No 425
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=11 Score=31.22 Aligned_cols=68 Identities=19% Similarity=0.066 Sum_probs=55.9
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+..++.+-+..+.+..|+..-..++..++....+++..+..+....++++|++.+..+....|++.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 34445777778888888888888788887777788899999999999999999999999988888765
No 426
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=71.07 E-value=1.3 Score=39.30 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=0.0
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHH--hcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhchhhhHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAI--NAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSF-RHLCSKQAQESLD 92 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~~ 92 (287)
.-....+..++.++..|++..|...+.+.- .+.+. ........|.+....|++++|+..+... ...-|.......+
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 344556778899999999999999997765 22332 2445566788889999999999999742 1222333333567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
...+.++...|++-+|...+-..-..
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp --------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 77889999999998888865544443
No 427
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.01 E-value=11 Score=23.53 Aligned_cols=28 Identities=25% Similarity=0.131 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
..+...|.-+-..|++.+|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3345566666677777777777766654
No 428
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=70.90 E-value=32 Score=23.85 Aligned_cols=81 Identities=14% Similarity=-0.033 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
...+|+...+.+++-.++-.|++|+.+...-..- ......+.+.- ......++|..+..+|+.+-.+++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~---~~~el~dll~i--------~VisCHNLA~FWR~~gd~~yELkY 72 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES---NEIELEDLLTI--------SVISCHNLADFWRSQGDSDYELKY 72 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc---ccccHHHHHHH--------HHHHHhhHHHHHHHcCChHHHHHH
Confidence 3456777777788888888888887764421000 00000111110 355678899999999999999999
Q ss_pred HHHHHh----hCCCch
Q 023081 172 YRKAQL----IDPDAN 183 (287)
Q Consensus 172 ~~~al~----~~~~~~ 183 (287)
++-|-+ +-|+.+
T Consensus 73 LqlASE~VltLiPQCp 88 (140)
T PF10952_consen 73 LQLASEKVLTLIPQCP 88 (140)
T ss_pred HHHHHHHHHHhccCCC
Confidence 986644 455543
No 429
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.13 E-value=52 Score=28.08 Aligned_cols=97 Identities=7% Similarity=-0.093 Sum_probs=67.0
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--hh----hHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAG---DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--KQ----AQESL 91 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~ 91 (287)
++-.+|.-|..-|+.+.|++.|-++-..- ...+..+.++-.+-...|+|..-..+..++...-. .+ ....+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45668888999999999999998854432 22356677777888888998888888777765410 11 11134
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
...-|......++|..|..+|-.+..
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEF 257 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666677899999988766543
No 430
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.96 E-value=51 Score=29.73 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+..=|..||.+....|++..|.++|.++-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 455588899999999999999999998755
No 431
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.71 E-value=29 Score=23.36 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
...-|..-...|++..|.+.+.++.+.
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334455555666666666666666544
No 432
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.67 E-value=68 Score=26.74 Aligned_cols=34 Identities=18% Similarity=0.093 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
+|.+-+..|..+.-.|++.++...+.+++-+.|+
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd 245 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQD 245 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCch
Confidence 4555556666666666666666666666655554
No 433
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.49 E-value=5.5 Score=32.86 Aligned_cols=69 Identities=17% Similarity=0.021 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA 124 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 124 (287)
....+++.+-...+.+..|+..-..+++.++... ..++..+..+....++++|.+.+..+....|....
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t--ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKT--KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhC--cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 4445566677777777777766666666555544 56666777777777777777777777777764433
No 434
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.26 E-value=1.1e+02 Score=28.55 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=29.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDA---NKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
-+.-..+++.......-..+...-+ ..+..||.++...|. .+|+..++....
T Consensus 580 GFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 580 GFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred eeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 3334455655555444333322222 122368888888886 678888887775
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.15 E-value=28 Score=21.71 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=11.2
Q ss_pred HHcCCHHHHHHHHHHH-------HHhchhhh
Q 023081 64 KQQDRVDEAVEAIKSF-------RHLCSKQA 87 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~-------~~~~p~~~ 87 (287)
-..|++.+|+.+|+++ +...|+++
T Consensus 17 D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 17 EKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 3444444444444444 44456554
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.97 E-value=1.1e+02 Score=28.36 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc----------------------h-------HHHHHHHHHHhccCH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA----------------------N-------KACNLSHCLIKQARY 198 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------------------~-------~~~~l~~~~~~~g~~ 198 (287)
.....+-+|..+...|+.++|..+|+++... .++ . .....+..+..+|+.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~ 423 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMYWNMD 423 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHHCCCH
Confidence 5677888999988899999999999887541 110 0 011345667778888
Q ss_pred HHHHHHHHHHHhc
Q 023081 199 TEARSVLEDVLLG 211 (287)
Q Consensus 199 ~~A~~~~~~~l~~ 211 (287)
..|...+..++..
T Consensus 424 ~~a~~ew~~~~~~ 436 (644)
T PRK11619 424 NTARSEWANLVAS 436 (644)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888877764
No 437
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=66.85 E-value=16 Score=18.72 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=9.3
Q ss_pred CHHHHHHHHHHHHhh
Q 023081 164 NYTSAEVVYRKAQLI 178 (287)
Q Consensus 164 ~~~~A~~~~~~al~~ 178 (287)
++++|..+|+++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356677777766543
No 438
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=66.82 E-value=14 Score=22.41 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHHHHHH
Q 023081 66 QDRVDEAVEAIKSFRH 81 (287)
Q Consensus 66 ~g~~~~A~~~~~~~~~ 81 (287)
.|++++|+.+|.+++.
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555555543
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.73 E-value=1.2e+02 Score=28.76 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=33.9
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+...+.-|.-|+...+. ...+++. ...+...|.-++..|++++|...|-+.+..
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 34556667777776533 2233322 455666777777888888888877777543
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.11 E-value=87 Score=26.68 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL--YKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~ 118 (287)
..+..++..++|..|...+..+...-|.......+..+... +-..-++.+|.+.++..+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46677788999999999999998863332212334444333 34678899999999987765
No 441
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=64.47 E-value=60 Score=26.99 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 33 KDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELL 112 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 112 (287)
-+|..-..+|.-.....|.. .+-.|.+.+.....-...++...+-+.....-+.+..++...+.++.+.|+.++|...|
T Consensus 310 tDW~~I~aLYdaL~~~apSP-vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay 388 (415)
T COG4941 310 TDWPAIDALYDALEQAAPSP-VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY 388 (415)
T ss_pred CChHHHHHHHHHHHHhCCCC-eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence 45666666666555556554 44555555555555566666666655443111112235556677777778888888888
Q ss_pred HHHHhccc
Q 023081 113 KQKLRMIY 120 (287)
Q Consensus 113 ~~al~~~~ 120 (287)
++++.+..
T Consensus 389 drAi~La~ 396 (415)
T COG4941 389 DRAIALAR 396 (415)
T ss_pred HHHHHhcC
Confidence 88877655
No 442
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=64.25 E-value=23 Score=21.42 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+...|.-.-+.|++++|+.+|.+++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33455556666777777776666654
No 443
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=64.18 E-value=71 Score=25.29 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=41.7
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhc-CC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINA-GD--RVDSALKDMAVVLKQ-QDRVDEAVEAIKS 78 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~-~~--~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 78 (287)
...++++..+.++|++.+.+..+++.. +| -+.+-...+..+|.. .|....+...+..
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 466888888899999999999988876 43 345667777777753 4666666666655
No 444
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=62.91 E-value=1e+02 Score=26.66 Aligned_cols=96 Identities=18% Similarity=0.035 Sum_probs=56.6
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhchh----
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRV-------DEAVEAIKSFRHLCSK---- 85 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~-------~~A~~~~~~~~~~~p~---- 85 (287)
-.+|..++..+||+.|...|+.+.+....+ +.+.-..|.+....+.. +....+++.++...-.
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~ 291 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALP 291 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhcc
Confidence 459999999999999999998887755433 12222344444444422 2444444444332111
Q ss_pred -----hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 86 -----QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 86 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..........+.++...|.+.+|...+-++...
T Consensus 292 ~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 292 RCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 011234556667777788887777766555543
No 445
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.38 E-value=14 Score=31.13 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 023081 69 VDEAVEAIKSFRH 81 (287)
Q Consensus 69 ~~~A~~~~~~~~~ 81 (287)
+..|+.+++++..
T Consensus 334 ~~~Al~yL~kA~d 346 (404)
T PF12753_consen 334 IKKALEYLKKAQD 346 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 4556666666654
No 446
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=61.72 E-value=19 Score=19.47 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=19.5
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAA 38 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A 38 (287)
++.+|...|++..++...+..+...|+...|
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 4556666676666666666666666666433
No 447
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=60.10 E-value=20 Score=22.42 Aligned_cols=17 Identities=35% Similarity=0.280 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHHHHh
Q 023081 66 QDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 66 ~g~~~~A~~~~~~~~~~ 82 (287)
.|++++|+.+|..+++.
T Consensus 19 ~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 19 EGRYSEAVFYYKEAAQL 35 (76)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 35555555555555443
No 448
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.00 E-value=57 Score=22.82 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=36.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 113 (287)
...+...+.....+.+++..+..++.++ .+...++.+|.+. +..+.++.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~--~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENP--ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccch--hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3444566789999999999998876555 6788888888754 3445555555
No 449
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=59.28 E-value=75 Score=23.98 Aligned_cols=180 Identities=13% Similarity=-0.001 Sum_probs=97.3
Q ss_pred CCCchHHHHhHHhHH-hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 16 PPGDSPYVRAKHVQL-VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK-----QQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 16 p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
...+++...||.... .+.++++|...|..--..+. .+.+-+.+|.-+. ..++...|++.+..+-..+...
T Consensus 31 EK~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~--- 106 (248)
T KOG4014|consen 31 EKRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQ--- 106 (248)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHH---
Confidence 346788888887765 56789999999877655443 3456666665443 2357899999999887754332
Q ss_pred HHHHHHHHHHHH-----cC--CHHHHHHHHHHHHhccchhhhhc--CCChhHHHHHHHHHhhhcCCC--cHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKK-----CG--RLDEQIELLKQKLRMIYHGEAFN--GKPTKTARSHGKKFQVTVKQE--TSRILGNLGWA 158 (287)
Q Consensus 90 ~~~~~l~~~~~~-----~g--~~~~A~~~~~~al~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~--~~~~~~~lg~~ 158 (287)
....++.++.. .+ +.++|.+++.++-.+......|. +....- .+++ ....|. .+.. .+..
T Consensus 107 -aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g----~~k~-~t~ap~~g~p~~---~~~~ 177 (248)
T KOG4014|consen 107 -ACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGG----KEKF-KTNAPGEGKPLD---RAEL 177 (248)
T ss_pred -HHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhcc----chhh-cccCCCCCCCcc---hhhh
Confidence 33334444332 22 36789999999888765322221 000000 0000 011111 1111 2333
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhc----cCHHHHHHHHHHHHh
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQ----ARYTEARSVLEDVLL 210 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~----g~~~~A~~~~~~~l~ 210 (287)
+.-..+.++|.++--++.++ +++.++ |+.+.|..- .+.++|..+-.++.+
T Consensus 178 ~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 44456777888877777665 334444 566555321 133444444444443
No 450
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.80 E-value=30 Score=21.63 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+...|.-.-..|+|++|+.+|+.+++
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455556667777777777776665
No 451
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=58.20 E-value=36 Score=23.55 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+|..+...|++++|..+|-+++..+|+
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4677777777777777777777777664
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.15 E-value=78 Score=29.54 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.0
Q ss_pred cCCCCchHHHHhHHhHHh---------hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 023081 14 KLPPGDSPYVRAKHVQLV---------EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR 68 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 68 (287)
..|-.++.|-..|++|-. .+..+.|+.+|+++++..|.- .+-.+++.++...|+
T Consensus 273 eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 273 EGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGE 335 (1226)
T ss_pred cCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhh
Confidence 345566667667777633 344566788888888877765 555566776666664
No 453
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=58.07 E-value=19 Score=22.41 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHH
Q 023081 67 DRVDEAVEAIKSFRH 81 (287)
Q Consensus 67 g~~~~A~~~~~~~~~ 81 (287)
|++++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455555555544443
No 454
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=57.33 E-value=1.1e+02 Score=27.48 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC----Cc-hHHH-HHHHHHHhccCHHHHHHHHHHH---HhcccCCC
Q 023081 148 TSRILGNLGWAYMQ--KGNYTSAEVVYRKAQLIDP----DA-NKAC-NLSHCLIKQARYTEARSVLEDV---LLGKLSGS 216 (287)
Q Consensus 148 ~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~----~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~---l~~~~~~~ 216 (287)
.|-++.+||.+-.- ...-..++..|.+++.... +. .-.+ .+|-.+.+.+++.+|+..+..+ +..+....
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~r 355 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSR 355 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--G
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCc
Confidence 34455555554432 1223456777777776322 11 2223 7899999999999999999765 44555566
Q ss_pred CchhHHHHHHHHHHhc
Q 023081 217 TETKTINRVKELLQEL 232 (287)
Q Consensus 217 ~~~~~~~~~~~~l~~l 232 (287)
++...|....+....+
T Consensus 356 eDeEiYKEfleIAneL 371 (618)
T PF05053_consen 356 EDEEIYKEFLEIANEL 371 (618)
T ss_dssp GGHHHHHHHHHHHHTH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7776666665554443
No 455
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=56.60 E-value=24 Score=22.08 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhc
Q 023081 36 EAAIVLFWKAINA 48 (287)
Q Consensus 36 ~~A~~~~~~al~~ 48 (287)
..|+.+..+|++.
T Consensus 4 ~~a~~l~~~Ave~ 16 (77)
T cd02683 4 LAAKEVLKRAVEL 16 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555443
No 456
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=55.50 E-value=49 Score=20.70 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=10.6
Q ss_pred cCCHHHHHHHHHHHHhc
Q 023081 102 CGRLDEQIELLKQKLRM 118 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~ 118 (287)
.|++++|+.+|.++++.
T Consensus 19 ~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 19 EGRFQEALVCYQEGIDL 35 (77)
T ss_pred hccHHHHHHHHHHHHHH
Confidence 36666666666666654
No 457
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.59 E-value=2e+02 Score=27.37 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=40.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 61 VVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 61 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..+.+..-|+-|+...+.- ..+++ ....+....|+-++..|++++|...|-+.+....
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~-~~d~d-~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQ-HLDED-TLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHhhhHHHHHHHHHhc-CCCHH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 3445556677776654432 22333 3346788889999999999999999999988654
No 458
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.44 E-value=40 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV 52 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 52 (287)
+.+|..+...|++++|..+|-+|+...|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 558888888899999999998998887765
No 459
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.91 E-value=63 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.|..+-.||.+|.+.|+-+.|...|+.--.+.|......
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fm 109 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFM 109 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHH
Confidence 466778899999999999999999988877888775543
No 460
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.72 E-value=1.4e+02 Score=25.55 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=63.2
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCchHHHH-----HHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGN--YTSAEVVYRKAQLIDPDANKACN-----LSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
++..+|++..+|+...+++.+.+. +..=+....++++.+|.+...|+ .+.+-...+...+-+++..+++..+.
T Consensus 101 ~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nf 180 (421)
T KOG0529|consen 101 ALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNF 180 (421)
T ss_pred HHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccc
Confidence 677888899999999999998774 68888999999999999876662 23333333446677788888887754
Q ss_pred CCCCchhHHHHHHHHHHhcccc
Q 023081 214 SGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 214 ~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
.+-..| ....-+|..+-..
T Consensus 181 SNYsaW---hyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 181 SNYSAW---HYRSLLLSTLHPK 199 (421)
T ss_pred hhhhHH---HHHHHHHHHhccc
Confidence 443444 2333344444433
No 461
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.11 E-value=1.2e+02 Score=26.34 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=16.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhc
Q 023081 188 LSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 188 l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
-|.+.+.+|+.++|.++++.+...
T Consensus 273 QGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 273 QGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH
Confidence 466777777777777777766543
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=52.67 E-value=36 Score=21.50 Aligned_cols=13 Identities=31% Similarity=0.097 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 023081 165 YTSAEVVYRKAQL 177 (287)
Q Consensus 165 ~~~A~~~~~~al~ 177 (287)
|+.|..+..+++.
T Consensus 5 ~~~A~~~I~kaL~ 17 (79)
T cd02679 5 YKQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444444443
No 463
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.30 E-value=1.4e+02 Score=24.84 Aligned_cols=104 Identities=13% Similarity=0.159 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
..+...++.+|.+.++|..|-..+... ..+. |. .+.+.-. -...+..+|.+|...++..+|
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~t------g~---~~~d~~~---------kl~l~iriarlyLe~~d~vea 163 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGI-PLDT------GQ---KAYDVEQ---------KLLLCIRIARLYLEDDDKVEA 163 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcc-Cccc------ch---hhhhhHH---------HHHHHHHHHHHHHhcCcHHHH
Confidence 356888999999999999988766421 1111 00 0000000 245577899999999999999
Q ss_pred HHHHHHHHh--hCCCchHHH-----HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 169 EVVYRKAQL--IDPDANKAC-----NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 169 ~~~~~~al~--~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..+..++-- .+..++... ..++++-..+++-+|.+.|-+....
T Consensus 164 e~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 164 EAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887632 233344332 4677888888888888877766554
No 464
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=51.56 E-value=1.2e+02 Score=27.52 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=21.3
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
.-+..+.|-.+|++.+..+|+ ..++..|.-+.+.|-...|...++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 54 DVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 334444555555555544444 344444444444444444444444
No 465
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.38 E-value=1.7e+02 Score=27.41 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
+..+.-.|+..|...++|.+|+..|-++.
T Consensus 504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 504 STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 44455558999999999999998886653
No 466
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.17 E-value=2e+02 Score=26.02 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 54 SALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 54 ~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
.....|-++++..| .|.-|+..+-.+-+..|.. .-..++.+|.+++....
T Consensus 258 ~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~-----------------~r~~~~~l~~~AI~sa~---------- 310 (618)
T PF05053_consen 258 QLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTP-----------------GRPTPLELFNEAISSAR---------- 310 (618)
T ss_dssp HHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T-----------------TS--HHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCC-----------------CCCCHHHHHHHHHHHHH----------
Confidence 34445666666665 4677777777766666542 12234455555554321
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.+ .+..+...|..+|-.+++.+++.+|+..+-.+-.
T Consensus 311 ----~~-------Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 311 ----TY-------YNNHHVYPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp ----HH-------CTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ----HH-------hcCCccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112456677778888888888888877766543
No 467
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.76 E-value=2.8e+02 Score=27.65 Aligned_cols=25 Identities=8% Similarity=-0.071 Sum_probs=14.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
..|+.-+...+++-+|-+.....+.
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 3445555566666666666555543
No 468
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.57 E-value=1.4e+02 Score=24.36 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=59.9
Q ss_pred CCCCchHHH--HhHHhHHhhCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 15 LPPGDSPYV--RAKHVQLVEKDPEAAIVLFWKAINAG------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 15 ~p~~~~~~~--~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+|.....+. ..+..-......++-++-+.+.++.. ....+++.++|..|.+.++.+.+.+++.+.++..-..
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 565554432 23333223334455566665555422 1236899999999999999999999999887754321
Q ss_pred h-HHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 87 A-QES---LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 87 ~-~~~---~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
. -.. .-..+|.+|..+.-.++.++..+..++.
T Consensus 149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk 184 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK 184 (412)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 1 001 1233455555555555555555555554
No 469
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.31 E-value=77 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 023081 102 CGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (287)
.|+++.|+++.+-+++.+
T Consensus 96 ~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 96 IGDFDGALEIAEYALEHG 113 (230)
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 366666666666666654
No 470
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.07 E-value=54 Score=19.44 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=13.3
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.....+..+|++++|.+++.+..+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455666666666666665553
No 471
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=46.77 E-value=2.5e+02 Score=26.36 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 183 NKACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 183 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
|.+.++..|+..+.+.+.+...+++.++
T Consensus 211 PDy~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 211 PDYFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred CCeeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 3444566666666666666666666655
No 472
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.15 E-value=88 Score=20.85 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+..+..||.+|...|+-+.|..-|+.--.+.|+..
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 356777888888888888888888888877888654
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.12 E-value=1.3e+02 Score=22.75 Aligned_cols=69 Identities=12% Similarity=0.039 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcCCCC--H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH
Q 023081 35 PEAAIVLFWKAINAGDRV--D------SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD 106 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~--~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~ 106 (287)
.+.|+..++..-+..|.. . -.-.....++.+.|.+++|.+.+++... +|+.. .....|..+-.....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~--~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQ--KLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCch--hHHHHHHHHHHcccccc
Confidence 456777775554443321 0 1122345678899999999999999988 66654 33444444433333333
No 474
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=45.79 E-value=1.8e+02 Score=24.48 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 68 RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
..-+|+..++.++...|.+. .+...+..+|...|-...|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~--~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNY--QLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 46788899999999999888 67788889999999999999998643
No 475
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=45.60 E-value=88 Score=20.75 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=24.2
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINA---GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
...++..++.+.-+..++...+. .|.. ....+.+...-.+..+|...+++...
T Consensus 21 s~~y~~~~n~~~m~~~L~pLh~~l~k~PeT---~~E~~F~~~fg~~L~~A~~~~~~y~~ 76 (100)
T PF08771_consen 21 SRLYFGENNVEKMFKILEPLHEMLEKGPET---LREVSFAQAFGRDLQEAREWLKRYER 76 (100)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHS-SS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566666666665554432 2333 22222222333345556666555544
No 476
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=45.25 E-value=63 Score=19.91 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=11.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|.-+-..|++++|+.+|..+++
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455555555555555443
No 477
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=44.00 E-value=45 Score=16.88 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhchh
Q 023081 69 VDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 69 ~~~A~~~~~~~~~~~p~ 85 (287)
++.|..+|++.+...|+
T Consensus 3 ~dRAR~IyeR~v~~hp~ 19 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE 19 (32)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44555555555555543
No 478
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=43.61 E-value=51 Score=20.36 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=8.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 023081 66 QDRVDEAVEAIKSFRH 81 (287)
Q Consensus 66 ~g~~~~A~~~~~~~~~ 81 (287)
.|++++|+.+|.++++
T Consensus 19 ~g~y~eA~~~Y~~aie 34 (75)
T cd02678 19 AGNYEEALRLYQHALE 34 (75)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555555555544
No 479
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.15 E-value=2.5e+02 Score=25.18 Aligned_cols=85 Identities=11% Similarity=-0.131 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
....+.+.......|..+-....-+..+...|+.+.|+..++..+...-.....-.+..++.++..+.+|..|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444555667888788888888888888888888888888772222222234556677777778888888888877
Q ss_pred Hhccc
Q 023081 116 LRMIY 120 (287)
Q Consensus 116 l~~~~ 120 (287)
.+...
T Consensus 330 ~desd 334 (546)
T KOG3783|consen 330 RDESD 334 (546)
T ss_pred Hhhhh
Confidence 76644
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=42.98 E-value=2e+02 Score=24.13 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 70 DEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 70 ~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
++.+..+..++..-|+-- ...+|..++.+....|.+++.+.+|++|+..
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 345555555555555321 2245555566666666666666666666554
No 481
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=42.82 E-value=3.7e+02 Score=27.18 Aligned_cols=132 Identities=16% Similarity=0.088 Sum_probs=0.0
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC------------------------------
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDR------------------------------ 68 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~------------------------------ 68 (287)
+|..++..|.+.+|+..|..++...... +.++-+++.+..-.+.
T Consensus 248 ~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~~~s~~~~~ 327 (1185)
T PF08626_consen 248 LGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTSSSSPRNSS 327 (1185)
T ss_pred hhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccCccCcccCC
Q ss_pred ---------------------------------HHHHHHHHHHHH----HhchhhhHHHHHHHHHHHHHHcC--------
Q 023081 69 ---------------------------------VDEAVEAIKSFR----HLCSKQAQESLDNVLIDLYKKCG-------- 103 (287)
Q Consensus 69 ---------------------------------~~~A~~~~~~~~----~~~p~~~~~~~~~~l~~~~~~~g-------- 103 (287)
+++++.+|.++. +..|.-.+.+.....+.++..+.
T Consensus 328 ~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~i 407 (1185)
T PF08626_consen 328 SSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHI 407 (1185)
T ss_pred ccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhh
Q ss_pred ------------CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 104 ------------RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 104 ------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
.-.++.+...+++.... ..---.+....+..+|.+|...|-..++.=+
T Consensus 408 V~~~~~~~~~~~~~~eI~~~l~~~~~~~l--------------------~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFv 467 (1185)
T PF08626_consen 408 VKRPLTPTPNISSRSEIAEFLFKAFPLQL--------------------KDLSVEDQIRIYSGLASVYGSLGFHRKKAFV 467 (1185)
T ss_pred hccccccccCCCCHHHHHHHHHHhhhhhh--------------------hhCCHHHHHHHHHHHHHHHHhcchhHHHHHH
Q ss_pred HHHHH
Q 023081 172 YRKAQ 176 (287)
Q Consensus 172 ~~~al 176 (287)
++.++
T Consensus 468 lR~l~ 472 (1185)
T PF08626_consen 468 LRELA 472 (1185)
T ss_pred HHHHH
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=42.68 E-value=2.8e+02 Score=25.74 Aligned_cols=134 Identities=11% Similarity=-0.035 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-hhh---hhcCCChhH----HHHH
Q 023081 65 QQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY-HGE---AFNGKPTKT----ARSH 136 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~---~~~~~~~~~----a~~~ 136 (287)
..++++.+...+..+-....... .-.+.+|..+...|+.++|...|+++..... -|. ...|....- ....
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~--rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~ 401 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKD--EWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKP 401 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCH--hhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCch
Confidence 45556555555444311111112 4566778888889999999999999855211 000 000111000 0000
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHH
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDV 208 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 208 (287)
.. .+ ........+..+...|+...|...+..++.. .+......++......|.++-++.....+
T Consensus 402 ~~--~~-----~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 402 DS--AL-----TQGPEMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hh--hh-----ccChHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00 00 0112345677788899999999999887764 33344447777777888888877665443
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.55 E-value=2.3e+02 Score=24.19 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=39.6
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCC-----CHHHHHHHH--HHHHHcCCHHHHHHHHHH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDR-----VDSALKDMA--VVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~la--~~~~~~g~~~~A~~~~~~ 78 (287)
.+...+..++|..|...|..+....+. ....+..++ ..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 455678899999999999999876432 123344444 445778899999999986
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.46 E-value=1.2e+02 Score=20.98 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=26.2
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
+....+..|...|..+...|++.+|.+.|+.++
T Consensus 94 IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 94 IGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 334467888889999999999999999998764
No 485
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.10 E-value=87 Score=19.21 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=12.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|.-.-..|++++|+.+|..+++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444455666666666655544
No 486
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=39.50 E-value=2.6e+02 Score=24.41 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
...+...|...|..++++..+..=+.. .|++. .++.+-+.+.+.|+|..|.+....+..
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~---s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNF---SFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh---hHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 346677788888889988888765543 56653 677778888888999998887666554
No 487
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.64 E-value=2.2e+02 Score=23.24 Aligned_cols=52 Identities=8% Similarity=-0.009 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhchhh
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ--DRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.-+++...+++.+|.+-+.|...-.++... .++..-+...+++++.++.+
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrN 143 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRN 143 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccc
Confidence 34455566666677777666666665555444 45666666666667666655
No 488
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=38.24 E-value=1.9e+02 Score=25.16 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL--IDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...+...+...|..++++..++.=+. +.|++..+..|-..+.+.|++..|.++...+....
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe 168 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 34667778899999999999887555 45777777788899999999999999988877654
No 489
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=36.80 E-value=72 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 166 TSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
..|+.++++|.. .+.|..| ++|.+++.+|+.
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 567777777754 5567777 788888777754
No 490
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.77 E-value=1.2e+02 Score=22.95 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=31.4
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV 69 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 69 (287)
.--++..+|.+++|.+.+++.+. +|+.......|..+-.....+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 34567889999999999999888 776655555666555544433
No 491
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.76 E-value=76 Score=26.68 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=42.5
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAG--------DRVDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
.-.+..|+-++..++++.|...|..|..+. -.+..+++..|..++..++.+..+-
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346788999999999999999999988654 2235677888888888777666543
No 492
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=36.62 E-value=1.3e+02 Score=22.10 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=9.1
Q ss_pred cHHHHHHHHHHHHHcCCH
Q 023081 148 TSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~ 165 (287)
.+-+++.+-.+|.+.|.+
T Consensus 90 Y~LilNgfk~lY~rvg~~ 107 (164)
T PF07840_consen 90 YGLILNGFKGLYSRVGRY 107 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHcccHHHHHHHHHH
Confidence 344455555555555543
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=35.91 E-value=1.6e+02 Score=20.81 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=13.3
Q ss_pred HHcCCHHHHHHHHHHHHHhchhhh
Q 023081 64 KQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+..-+.+.|..+|+++++.+|++.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HL 110 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHL 110 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-T
T ss_pred HHhhCHHHHHHHHHHHHHHCcchH
Confidence 334455666777777777777664
No 494
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=35.87 E-value=2.6e+02 Score=23.35 Aligned_cols=170 Identities=14% Similarity=0.046 Sum_probs=93.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--hhh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 41 LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--SKQ-AQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 41 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
++++-....|+..++++..|...+..|+|..|-.++-...... |+. ....+|..++.- .-..+|+.|++-+.+.-+
T Consensus 117 ~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASE-IL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 117 HLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASE-ILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 3333334557778899999999999999999988766555443 322 223345544432 334789999998777665
Q ss_pred ccch-----------hhhh----------c-CCChhHHHHHHHH---HhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHH
Q 023081 118 MIYH-----------GEAF----------N-GKPTKTARSHGKK---FQVTVKQETSRILGNLGWAYMQK-GNYTSAEVV 171 (287)
Q Consensus 118 ~~~~-----------~~~~----------~-~~~~~~a~~~~~~---~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~ 171 (287)
.... ...| + .+..+...+.+-. +...+....|..+..++.+..-. .+...+++.
T Consensus 196 ~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkd 275 (432)
T KOG2758|consen 196 YIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKD 275 (432)
T ss_pred HHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHH
Confidence 4321 0000 1 1111111111110 01112222455555666655444 566777777
Q ss_pred HHHHHhhCCCc-hHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 172 YRKAQLIDPDA-NKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 172 ~~~al~~~~~~-~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+-+.++...-. .+. ...-.|+.-.=+++.|...++++-+.
T Consensus 276 lvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 276 LVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEV 317 (432)
T ss_pred HHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 77777654322 111 23344555566788888887776554
No 495
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=35.62 E-value=68 Score=16.54 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 023081 54 SALKDMAVVLKQQDR---VDEAVEAIKSFR 80 (287)
Q Consensus 54 ~~~~~la~~~~~~g~---~~~A~~~~~~~~ 80 (287)
++.+++|.++.+... ..+++..++..+
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~ 31 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELY 31 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHC
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345556666665543 334444444443
No 496
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.60 E-value=1.1e+02 Score=19.07 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=10.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~ 177 (287)
|.-.-..|++++|+.+|..+++
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 3344445555555555555443
No 497
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.59 E-value=1.2e+02 Score=21.43 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+|..+...|+++++..++-.++...|...
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 578888888888888888888888777543
No 498
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.53 E-value=1.2e+02 Score=21.85 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhchhh
Q 023081 58 DMAVVLKQQD-RVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 58 ~la~~~~~~g-~~~~A~~~~~~~~~~~p~~ 86 (287)
.+|..+...| +.++|..+|-+++..+|+-
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 5788888888 8888888888888887753
No 499
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.47 E-value=1.5e+02 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=17.8
Q ss_pred HHHcCCHHHHHHHHHHHHhccc
Q 023081 99 YKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+...|+|+.++..|.++..+..
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHH
Confidence 3567999999999998887754
No 500
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.45 E-value=3.1e+02 Score=24.05 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=52.0
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHH--Hhchhhh
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAV-VLKQQDRVDEAVEAIKSFR--HLCSKQA 87 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~-~~~~~g~~~~A~~~~~~~~--~~~p~~~ 87 (287)
.+..|..+..+-.+-.-...-...+.|.++|++.-... .-+..+...+.. .-+..| .+...+.+ ++.|+-
T Consensus 200 ~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~-----K~Lv~EMisqkm~Pnl- 273 (625)
T KOG4422|consen 200 FETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG-----KKLVAEMISQKMTPNL- 273 (625)
T ss_pred HhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc-----HHHHHHHHHhhcCCch-
Confidence 34556666555443333333355677777776654322 112233333322 222222 33444443 334553
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
...+.+-.+..+-|+++.|...+.+++.-
T Consensus 274 --~TfNalL~c~akfg~F~~ar~aalqil~E 302 (625)
T KOG4422|consen 274 --FTFNALLSCAAKFGKFEDARKAALQILGE 302 (625)
T ss_pred --HhHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 35566666777779888888887777654
Done!