Query 023081
Match_columns 287
No_of_seqs 425 out of 2654
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 16:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 100.0 5.5E-26 1.9E-30 175.1 23.0 185 16-232 2-198 (217)
2 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-25 3.8E-30 168.8 22.6 169 16-212 2-171 (184)
3 2pl2_A Hypothetical conserved 99.9 6.4E-26 2.2E-30 174.8 17.8 174 7-209 27-212 (217)
4 4gyw_A UDP-N-acetylglucosamine 99.9 2E-25 6.8E-30 198.9 20.0 172 13-212 3-175 (723)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4.6E-24 1.6E-28 178.4 25.2 223 6-234 122-354 (388)
6 4eqf_A PEX5-related protein; a 99.9 8.4E-24 2.9E-28 175.3 25.8 211 17-233 63-295 (365)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-23 4.6E-28 175.6 26.8 203 7-212 89-301 (388)
8 4eqf_A PEX5-related protein; a 99.9 3.5E-24 1.2E-28 177.6 21.4 206 7-213 87-312 (365)
9 4i17_A Hypothetical protein; T 99.9 1.9E-23 6.6E-28 161.9 22.3 177 15-212 3-210 (228)
10 2h6f_A Protein farnesyltransfe 99.9 8E-24 2.7E-28 175.8 20.6 196 10-208 88-302 (382)
11 3hym_B Cell division cycle pro 99.9 9.1E-23 3.1E-27 166.2 26.3 201 9-212 46-266 (330)
12 3uq3_A Heat shock protein STI1 99.9 3.9E-23 1.3E-27 162.5 22.9 212 18-234 4-222 (258)
13 2h6f_A Protein farnesyltransfe 99.9 4.7E-24 1.6E-28 177.2 17.9 166 44-212 88-270 (382)
14 1fch_A Peroxisomal targeting s 99.9 2.1E-22 7.3E-27 166.8 27.6 199 11-212 52-281 (368)
15 3hym_B Cell division cycle pro 99.9 2.9E-22 1E-26 163.2 26.2 197 12-211 15-222 (330)
16 2y4t_A DNAJ homolog subfamily 99.9 1.6E-22 5.5E-27 172.0 24.5 204 6-212 13-241 (450)
17 2q7f_A YRRB protein; TPR, prot 99.9 2.9E-22 1E-26 156.3 23.7 191 19-212 23-223 (243)
18 3ieg_A DNAJ homolog subfamily 99.9 3.1E-22 1.1E-26 164.7 25.0 203 8-213 94-337 (359)
19 1fch_A Peroxisomal targeting s 99.9 2.1E-22 7.2E-27 166.8 23.6 226 8-235 87-346 (368)
20 2y4t_A DNAJ homolog subfamily 99.9 5.1E-22 1.7E-26 168.9 24.5 203 8-213 117-360 (450)
21 3qky_A Outer membrane assembly 99.9 3.6E-22 1.2E-26 158.0 21.9 213 13-234 9-247 (261)
22 3ieg_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 161.6 25.5 193 18-213 2-219 (359)
23 4abn_A Tetratricopeptide repea 99.9 9.8E-23 3.4E-27 174.7 18.9 190 11-204 94-314 (474)
24 3u4t_A TPR repeat-containing p 99.9 3.1E-22 1.1E-26 159.0 19.9 203 7-212 25-251 (272)
25 3cv0_A Peroxisome targeting si 99.9 6.6E-22 2.2E-26 160.9 21.3 196 14-212 15-236 (327)
26 2vq2_A PILW, putative fimbrial 99.9 3.6E-21 1.2E-25 148.2 23.6 195 14-211 3-211 (225)
27 3uq3_A Heat shock protein STI1 99.9 7.7E-22 2.6E-26 155.1 20.1 192 9-212 29-237 (258)
28 2ho1_A Type 4 fimbrial biogene 99.9 2.9E-21 9.8E-26 151.7 23.1 197 13-212 30-239 (252)
29 3cv0_A Peroxisome targeting si 99.9 4.2E-21 1.4E-25 156.1 24.5 202 8-212 44-270 (327)
30 2xpi_A Anaphase-promoting comp 99.9 4E-21 1.4E-25 169.2 25.5 199 10-211 330-545 (597)
31 3urz_A Uncharacterized protein 99.9 4.4E-22 1.5E-26 152.2 16.6 167 18-212 3-187 (208)
32 2ho1_A Type 4 fimbrial biogene 99.9 4E-21 1.4E-25 150.9 21.8 178 48-231 31-221 (252)
33 3as5_A MAMA; tetratricopeptide 99.9 2.7E-21 9.3E-26 144.2 19.2 168 18-213 7-175 (186)
34 4ga2_A E3 SUMO-protein ligase 99.9 1.1E-22 3.9E-27 147.2 10.7 146 24-197 2-149 (150)
35 2xpi_A Anaphase-promoting comp 99.9 2.5E-20 8.5E-25 164.1 27.2 194 16-212 302-505 (597)
36 4abn_A Tetratricopeptide repea 99.9 6.7E-22 2.3E-26 169.5 16.1 164 7-174 125-317 (474)
37 3vtx_A MAMA; tetratricopeptide 99.9 3.6E-21 1.2E-25 144.0 17.8 151 6-184 26-176 (184)
38 3mkr_A Coatomer subunit epsilo 99.9 1.2E-20 4E-25 151.7 21.8 190 15-212 61-265 (291)
39 3fp2_A TPR repeat-containing p 99.9 5.4E-20 1.8E-24 159.8 27.5 208 4-213 44-375 (537)
40 2q7f_A YRRB protein; TPR, prot 99.9 9E-21 3.1E-25 147.8 19.8 176 52-233 22-207 (243)
41 3u4t_A TPR repeat-containing p 99.9 1.9E-20 6.3E-25 148.7 20.8 193 18-212 2-209 (272)
42 2ond_A Cleavage stimulation fa 99.9 2.6E-20 8.9E-25 151.0 21.7 209 7-218 38-277 (308)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.1E-20 3.8E-25 150.1 18.7 193 16-212 40-245 (275)
44 2yhc_A BAMD, UPF0169 lipoprote 99.9 5.2E-20 1.8E-24 142.4 21.0 189 18-215 3-217 (225)
45 2r5s_A Uncharacterized protein 99.9 4.6E-21 1.6E-25 142.6 13.5 168 15-211 2-173 (176)
46 2pzi_A Probable serine/threoni 99.9 1.6E-20 5.5E-25 167.7 18.0 167 13-211 388-563 (681)
47 3fp2_A TPR repeat-containing p 99.9 6.9E-20 2.3E-24 159.1 20.6 202 7-212 265-492 (537)
48 2gw1_A Mitochondrial precursor 99.9 6.1E-20 2.1E-24 158.4 19.7 201 8-212 260-479 (514)
49 3qou_A Protein YBBN; thioredox 99.9 3.8E-20 1.3E-24 148.5 17.1 171 13-211 111-284 (287)
50 4gyw_A UDP-N-acetylglucosamine 99.9 5.6E-20 1.9E-24 164.0 19.9 155 48-233 4-159 (723)
51 2pzi_A Probable serine/threoni 99.8 1.8E-20 6.1E-25 167.4 15.0 156 13-197 427-583 (681)
52 4i17_A Hypothetical protein; T 99.8 1.4E-19 4.7E-24 140.2 17.6 162 7-192 29-224 (228)
53 2gw1_A Mitochondrial precursor 99.8 8.9E-20 3.1E-24 157.4 18.3 211 16-233 234-463 (514)
54 3nf1_A KLC 1, kinesin light ch 99.8 1.8E-19 6E-24 145.5 18.8 196 14-212 22-308 (311)
55 4ga2_A E3 SUMO-protein ligase 99.8 3.5E-20 1.2E-24 134.1 11.7 144 58-232 2-147 (150)
56 1ouv_A Conserved hypothetical 99.8 1.8E-17 6.1E-22 131.7 27.9 186 15-211 2-215 (273)
57 4gco_A Protein STI-1; structur 99.8 1.3E-19 4.5E-24 126.9 13.6 116 48-191 8-124 (126)
58 4gco_A Protein STI-1; structur 99.8 1.4E-19 4.8E-24 126.8 13.0 109 11-121 5-113 (126)
59 1xnf_A Lipoprotein NLPI; TPR, 99.8 7.3E-19 2.5E-23 139.5 18.5 193 7-205 65-269 (275)
60 3edt_B KLC 2, kinesin light ch 99.8 4.8E-19 1.6E-23 140.8 16.7 177 15-211 39-281 (283)
61 3qky_A Outer membrane assembly 99.8 3E-19 1E-23 141.2 15.3 173 7-202 37-252 (261)
62 3ulq_A Response regulator aspa 99.8 3.8E-19 1.3E-23 148.4 16.6 186 7-212 85-294 (383)
63 1qqe_A Vesicular transport pro 99.8 8.6E-19 2.9E-23 140.9 17.7 173 21-213 39-230 (292)
64 1ouv_A Conserved hypothetical 99.8 1.6E-17 5.5E-22 132.0 24.8 185 16-211 35-251 (273)
65 3urz_A Uncharacterized protein 99.8 2.1E-19 7.3E-24 137.2 12.1 156 7-191 26-199 (208)
66 3mkr_A Coatomer subunit epsilo 99.8 7.1E-18 2.4E-22 135.4 21.2 209 14-233 28-248 (291)
67 4g1t_A Interferon-induced prot 99.8 2E-17 7E-22 141.5 25.1 196 17-213 49-278 (472)
68 2vsy_A XCC0866; transferase, g 99.8 2.1E-18 7.3E-23 151.2 18.6 152 7-186 11-165 (568)
69 3gyz_A Chaperone protein IPGC; 99.8 1.4E-19 4.8E-24 130.5 8.8 113 42-182 25-137 (151)
70 3as5_A MAMA; tetratricopeptide 99.8 3.7E-18 1.3E-22 127.0 16.2 148 9-184 32-179 (186)
71 4a1s_A PINS, partner of inscut 99.8 2.5E-18 8.5E-23 144.5 16.4 199 10-211 73-332 (411)
72 2c2l_A CHIP, carboxy terminus 99.8 2.2E-18 7.4E-23 137.8 15.2 191 16-211 1-199 (281)
73 2vq2_A PILW, putative fimbrial 99.8 3E-17 1E-21 126.1 20.9 176 8-186 31-219 (225)
74 4g1t_A Interferon-induced prot 99.8 5.6E-18 1.9E-22 144.9 18.4 204 8-214 161-404 (472)
75 3gyz_A Chaperone protein IPGC; 99.8 1.1E-18 3.7E-23 125.9 11.5 112 8-121 25-136 (151)
76 1qqe_A Vesicular transport pro 99.8 6.2E-18 2.1E-22 135.9 16.7 174 19-211 77-269 (292)
77 3q15_A PSP28, response regulat 99.8 1.1E-17 3.6E-22 139.5 18.2 172 21-212 103-291 (378)
78 3sf4_A G-protein-signaling mod 99.8 2.5E-17 8.5E-22 137.8 19.8 194 18-212 8-257 (406)
79 2fo7_A Synthetic consensus TPR 99.8 4.1E-17 1.4E-21 114.8 18.0 134 20-181 2-135 (136)
80 2vsy_A XCC0866; transferase, g 99.8 1.7E-17 5.9E-22 145.5 18.8 154 32-213 2-159 (568)
81 3sf4_A G-protein-signaling mod 99.8 1.1E-17 3.9E-22 139.9 16.5 203 9-212 33-297 (406)
82 2vgx_A Chaperone SYCD; alterna 99.8 9E-18 3.1E-22 121.0 13.7 76 41-118 9-84 (148)
83 4a1s_A PINS, partner of inscut 99.8 1.6E-17 5.4E-22 139.6 17.0 192 18-212 47-293 (411)
84 1p5q_A FKBP52, FK506-binding p 99.8 4E-19 1.4E-23 145.6 6.9 155 31-211 125-294 (336)
85 2vgx_A Chaperone SYCD; alterna 99.8 2.6E-18 9E-23 123.8 10.3 131 75-233 9-140 (148)
86 2ond_A Cleavage stimulation fa 99.8 1.5E-16 5E-21 128.9 21.5 173 36-211 33-232 (308)
87 3ro2_A PINS homolog, G-protein 99.8 2E-17 6.9E-22 134.4 15.8 85 20-104 44-138 (338)
88 3ro2_A PINS homolog, G-protein 99.8 9.6E-17 3.3E-21 130.4 19.4 192 20-212 6-253 (338)
89 3rjv_A Putative SEL1 repeat pr 99.8 4.1E-16 1.4E-20 119.3 21.2 164 16-211 15-197 (212)
90 3ulq_A Response regulator aspa 99.7 4.9E-17 1.7E-21 135.6 16.9 192 18-211 142-368 (383)
91 2ooe_A Cleavage stimulation fa 99.7 3.7E-16 1.3E-20 135.9 21.6 202 8-211 261-492 (530)
92 2xcb_A PCRH, regulatory protei 99.7 1.9E-17 6.6E-22 118.4 10.9 114 42-183 7-120 (142)
93 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1E-16 3.5E-21 122.4 15.7 148 20-182 7-154 (213)
94 3upv_A Heat shock protein STI1 99.7 1.3E-16 4.5E-21 111.5 14.7 124 16-161 1-124 (126)
95 2qfc_A PLCR protein; TPR, HTH, 99.7 1.6E-16 5.4E-21 127.8 17.1 177 16-212 72-267 (293)
96 2xcb_A PCRH, regulatory protei 99.7 5.7E-17 2E-21 116.0 12.9 133 74-234 5-138 (142)
97 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.3E-16 4.6E-21 123.2 15.9 155 6-183 25-218 (225)
98 1p5q_A FKBP52, FK506-binding p 99.7 4.6E-17 1.6E-21 133.4 14.0 140 10-177 138-293 (336)
99 3dra_A Protein farnesyltransfe 99.7 9.7E-16 3.3E-20 122.8 21.2 199 10-211 58-287 (306)
100 3edt_B KLC 2, kinesin light ch 99.7 9.2E-17 3.1E-21 127.5 15.1 161 30-211 12-198 (283)
101 2ifu_A Gamma-SNAP; membrane fu 99.7 1.7E-16 6E-21 128.4 16.9 171 21-213 38-225 (307)
102 2fo7_A Synthetic consensus TPR 99.7 8.4E-16 2.9E-20 108.0 17.6 131 54-212 2-133 (136)
103 3u3w_A Transcriptional activat 99.7 4.3E-16 1.5E-20 125.2 16.9 170 23-212 79-267 (293)
104 2e2e_A Formate-dependent nitri 99.7 2.6E-16 8.9E-21 116.7 13.7 132 27-186 18-152 (177)
105 1a17_A Serine/threonine protei 99.7 9.7E-16 3.3E-20 112.0 16.5 133 18-178 12-146 (166)
106 3q15_A PSP28, response regulat 99.7 1.2E-15 4.2E-20 126.9 18.8 141 18-179 140-291 (378)
107 3upv_A Heat shock protein STI1 99.7 7.7E-16 2.6E-20 107.6 14.5 116 51-194 2-124 (126)
108 2lni_A Stress-induced-phosphop 99.7 7.7E-16 2.6E-20 108.2 14.4 123 14-164 11-133 (133)
109 4gcn_A Protein STI-1; structur 99.7 7.6E-16 2.6E-20 107.9 14.1 105 17-121 6-115 (127)
110 1a17_A Serine/threonine protei 99.7 2.5E-15 8.6E-20 109.8 17.4 131 53-211 13-146 (166)
111 4gcn_A Protein STI-1; structur 99.7 7.2E-16 2.4E-20 108.0 13.6 111 52-183 7-117 (127)
112 3gw4_A Uncharacterized protein 99.7 2.6E-15 8.7E-20 113.6 17.4 161 30-212 3-177 (203)
113 2vyi_A SGTA protein; chaperone 99.7 6.6E-16 2.3E-20 108.0 13.0 124 14-165 7-130 (131)
114 2fbn_A 70 kDa peptidylprolyl i 99.7 7.6E-17 2.6E-21 122.0 8.5 161 24-210 9-185 (198)
115 3sz7_A HSC70 cochaperone (SGT) 99.7 9.5E-16 3.2E-20 112.3 13.3 106 14-121 6-111 (164)
116 2r5s_A Uncharacterized protein 99.7 2.2E-16 7.4E-21 117.2 9.8 143 8-177 29-172 (176)
117 3dss_A Geranylgeranyl transfer 99.7 3.3E-14 1.1E-18 114.6 23.2 175 10-212 55-268 (331)
118 3qou_A Protein YBBN; thioredox 99.7 6.4E-15 2.2E-19 118.0 18.0 158 49-235 113-271 (287)
119 3sz7_A HSC70 cochaperone (SGT) 99.7 1.9E-15 6.7E-20 110.6 13.5 109 50-186 8-116 (164)
120 2lni_A Stress-induced-phosphop 99.7 2.6E-15 8.7E-20 105.5 13.5 120 50-197 13-133 (133)
121 2vyi_A SGTA protein; chaperone 99.7 2.6E-15 8.7E-20 105.0 13.2 122 49-198 8-130 (131)
122 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 1.4E-16 4.7E-21 135.9 7.8 154 31-210 246-414 (457)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1.4E-14 4.9E-19 110.4 18.4 128 54-212 7-151 (213)
124 3gw4_A Uncharacterized protein 99.7 2.8E-15 9.4E-20 113.4 14.1 162 11-192 17-190 (203)
125 2fbn_A 70 kDa peptidylprolyl i 99.7 1.4E-15 4.8E-20 115.0 12.4 136 13-176 32-184 (198)
126 1na0_A Designed protein CTPR3; 99.6 1.4E-14 4.9E-19 100.2 15.9 121 15-163 4-125 (125)
127 3nf1_A KLC 1, kinesin light ch 99.6 3.5E-15 1.2E-19 120.1 14.7 164 15-181 65-310 (311)
128 2e2e_A Formate-dependent nitri 99.6 5.4E-15 1.9E-19 109.6 14.2 125 63-215 20-148 (177)
129 4f3v_A ESX-1 secretion system 99.6 4E-16 1.4E-20 122.5 7.9 180 5-212 26-238 (282)
130 2hr2_A Hypothetical protein; a 99.6 2.5E-15 8.7E-20 107.3 11.3 114 54-186 12-139 (159)
131 1hz4_A MALT regulatory protein 99.6 5.7E-14 1.9E-18 116.5 21.1 174 19-212 14-204 (373)
132 3q49_B STIP1 homology and U bo 99.6 7.6E-15 2.6E-19 103.9 13.5 107 13-121 3-109 (137)
133 1hxi_A PEX5, peroxisome target 99.6 4.3E-15 1.5E-19 103.1 11.8 101 19-121 17-117 (121)
134 1na0_A Designed protein CTPR3; 99.6 3.2E-14 1.1E-18 98.4 16.4 120 49-196 4-125 (125)
135 3dra_A Protein farnesyltransfe 99.6 1.9E-13 6.4E-18 109.6 22.9 167 29-198 42-236 (306)
136 3q49_B STIP1 homology and U bo 99.6 9E-15 3.1E-19 103.5 13.7 106 48-181 4-109 (137)
137 2hr2_A Hypothetical protein; a 99.6 6.2E-15 2.1E-19 105.3 12.6 101 19-121 11-134 (159)
138 3mv2_B Coatomer subunit epsilo 99.6 1.5E-13 5.1E-18 109.2 21.5 190 9-231 90-301 (310)
139 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 2.3E-15 7.9E-20 128.3 12.0 134 10-171 259-407 (457)
140 2ooe_A Cleavage stimulation fa 99.6 5.5E-14 1.9E-18 122.2 20.6 175 36-213 255-456 (530)
141 3rkv_A Putative peptidylprolyl 99.6 1.5E-14 5.1E-19 105.6 14.3 115 53-195 11-145 (162)
142 1dce_A Protein (RAB geranylger 99.6 8E-15 2.7E-19 127.8 15.0 163 10-200 54-244 (567)
143 1wao_1 Serine/threonine protei 99.6 2.6E-16 8.8E-21 134.8 5.2 137 18-182 5-154 (477)
144 2xm6_A Protein corresponding t 99.6 1.2E-12 4.1E-17 112.7 28.1 186 15-211 35-252 (490)
145 3e4b_A ALGK; tetratricopeptide 99.6 1.8E-13 6.3E-18 116.5 22.5 185 16-211 173-387 (452)
146 2xm6_A Protein corresponding t 99.6 4.2E-13 1.4E-17 115.5 24.9 182 19-211 219-432 (490)
147 1hxi_A PEX5, peroxisome target 99.6 9.8E-15 3.4E-19 101.2 11.7 101 55-183 19-119 (121)
148 1elw_A TPR1-domain of HOP; HOP 99.6 4E-14 1.4E-18 97.0 14.7 102 18-121 3-104 (118)
149 2ifu_A Gamma-SNAP; membrane fu 99.6 1.8E-14 6.2E-19 116.5 15.0 162 19-203 76-253 (307)
150 3ro3_A PINS homolog, G-protein 99.6 1.7E-14 5.9E-19 104.5 13.2 139 20-178 10-158 (164)
151 3rkv_A Putative peptidylprolyl 99.6 1.2E-14 4E-19 106.2 12.1 102 18-121 10-129 (162)
152 2kck_A TPR repeat; tetratricop 99.6 1.5E-14 5.1E-19 98.2 11.5 105 15-121 2-109 (112)
153 1elw_A TPR1-domain of HOP; HOP 99.6 1E-13 3.5E-18 94.9 15.8 112 53-192 4-116 (118)
154 2dba_A Smooth muscle cell asso 99.6 4.1E-14 1.4E-18 101.2 14.2 108 12-121 21-131 (148)
155 1elr_A TPR2A-domain of HOP; HO 99.6 3E-14 1E-18 99.5 12.8 102 17-120 2-110 (131)
156 2qfc_A PLCR protein; TPR, HTH, 99.6 2E-13 6.7E-18 109.6 18.8 148 11-178 101-266 (293)
157 3u3w_A Transcriptional activat 99.6 1.1E-13 3.8E-18 111.0 17.4 137 23-179 119-267 (293)
158 2xev_A YBGF; tetratricopeptide 99.6 1.3E-13 4.6E-18 96.3 15.3 103 19-121 2-108 (129)
159 2dba_A Smooth muscle cell asso 99.6 1.1E-13 3.8E-18 98.9 15.0 119 48-192 23-143 (148)
160 3q7a_A Farnesyltransferase alp 99.6 3.5E-13 1.2E-17 109.1 18.6 170 21-218 56-244 (349)
161 1dce_A Protein (RAB geranylger 99.6 1.8E-13 6.3E-18 119.2 18.1 173 31-234 40-241 (567)
162 1elr_A TPR2A-domain of HOP; HO 99.6 9.4E-14 3.2E-18 96.9 13.4 124 52-196 3-126 (131)
163 2if4_A ATFKBP42; FKBP-like, al 99.6 2.2E-15 7.4E-20 123.5 5.4 150 18-212 178-329 (338)
164 3dss_A Geranylgeranyl transfer 99.6 1.1E-12 3.8E-17 105.7 21.0 174 10-211 99-304 (331)
165 3q7a_A Farnesyltransferase alp 99.6 2.3E-13 8E-18 110.2 17.0 162 9-198 78-258 (349)
166 3ro3_A PINS homolog, G-protein 99.6 1.3E-13 4.4E-18 99.8 14.1 140 53-212 9-159 (164)
167 2c2l_A CHIP, carboxy terminus 99.6 3.5E-14 1.2E-18 113.3 11.8 105 50-182 1-105 (281)
168 1ihg_A Cyclophilin 40; ppiase 99.6 2.2E-13 7.4E-18 112.8 16.9 122 54-203 224-362 (370)
169 3rjv_A Putative SEL1 repeat pr 99.6 1.3E-13 4.6E-18 105.3 14.4 141 36-211 3-158 (212)
170 1hz4_A MALT regulatory protein 99.5 3.4E-13 1.2E-17 111.8 17.5 111 10-120 39-166 (373)
171 1wao_1 Serine/threonine protei 99.5 6.4E-15 2.2E-19 126.1 5.1 125 54-206 7-134 (477)
172 4b4t_Q 26S proteasome regulato 99.5 1.7E-12 5.8E-17 109.7 19.7 174 19-212 4-205 (434)
173 2kck_A TPR repeat; tetratricop 99.5 1.5E-13 5.3E-18 93.1 10.9 108 49-182 2-110 (112)
174 1ihg_A Cyclophilin 40; ppiase 99.5 1.5E-13 5.1E-18 113.8 12.7 125 19-171 223-363 (370)
175 2xev_A YBGF; tetratricopeptide 99.5 6.4E-13 2.2E-17 92.7 14.0 109 55-186 4-113 (129)
176 2if4_A ATFKBP42; FKBP-like, al 99.5 5.5E-14 1.9E-18 115.1 9.6 120 52-216 178-298 (338)
177 4f3v_A ESX-1 secretion system 99.5 1.3E-13 4.6E-18 108.1 11.1 163 21-211 9-200 (282)
178 3e4b_A ALGK; tetratricopeptide 99.5 4E-12 1.4E-16 108.3 20.5 184 16-211 138-351 (452)
179 3k9i_A BH0479 protein; putativ 99.5 9.3E-14 3.2E-18 95.6 7.6 89 31-121 2-93 (117)
180 3k9i_A BH0479 protein; putativ 99.5 2.2E-13 7.7E-18 93.7 9.1 94 65-186 2-98 (117)
181 1zu2_A Mitochondrial import re 99.4 2.4E-13 8.2E-18 96.9 8.0 90 30-121 13-123 (158)
182 1zu2_A Mitochondrial import re 99.4 4.5E-13 1.5E-17 95.4 8.5 95 64-186 13-128 (158)
183 4b4t_Q 26S proteasome regulato 99.4 2.7E-12 9.3E-17 108.4 13.6 172 21-212 57-246 (434)
184 1xi4_A Clathrin heavy chain; a 99.4 3.7E-11 1.3E-15 111.2 20.8 189 16-225 1102-1320(1630)
185 2kat_A Uncharacterized protein 99.4 3.5E-12 1.2E-16 87.3 10.8 86 1-86 1-86 (115)
186 3ma5_A Tetratricopeptide repea 99.4 3.7E-12 1.3E-16 84.9 10.2 74 14-87 2-75 (100)
187 4e6h_A MRNA 3'-END-processing 99.3 1.8E-10 6E-15 102.1 21.3 204 9-213 333-572 (679)
188 2l6j_A TPR repeat-containing p 99.3 6E-13 2.1E-17 90.2 4.3 96 18-113 3-102 (111)
189 1na3_A Designed protein CTPR2; 99.3 1.4E-11 4.7E-16 80.2 10.1 86 16-103 6-91 (91)
190 2kat_A Uncharacterized protein 99.3 3.2E-11 1.1E-15 82.4 12.3 83 37-121 3-85 (115)
191 3n71_A Histone lysine methyltr 99.3 1.2E-10 4.3E-15 99.3 17.9 133 58-211 314-464 (490)
192 1xi4_A Clathrin heavy chain; a 99.3 1.9E-10 6.5E-15 106.6 20.0 166 25-211 1055-1250(1630)
193 3mv2_B Coatomer subunit epsilo 99.3 2.8E-10 9.6E-15 90.5 18.4 152 38-212 85-241 (310)
194 1b89_A Protein (clathrin heavy 99.3 7.8E-13 2.7E-17 109.7 2.3 173 7-207 21-202 (449)
195 3ly7_A Transcriptional activat 99.3 1.7E-10 5.8E-15 93.4 15.6 147 10-185 185-346 (372)
196 3n71_A Histone lysine methyltr 99.3 9.2E-11 3.1E-15 100.1 13.7 133 26-179 316-465 (490)
197 2l6j_A TPR repeat-containing p 99.3 6.2E-12 2.1E-16 85.2 5.2 66 53-120 4-69 (111)
198 1b89_A Protein (clathrin heavy 99.3 2.2E-11 7.6E-16 101.1 9.4 195 17-232 59-254 (449)
199 3ma5_A Tetratricopeptide repea 99.2 7.7E-11 2.6E-15 78.4 9.3 69 144-212 2-71 (100)
200 1na3_A Designed protein CTPR2; 99.2 1.9E-10 6.3E-15 74.7 10.6 85 51-163 7-91 (91)
201 1klx_A Cysteine rich protein B 99.2 8.2E-10 2.8E-14 78.0 13.6 112 32-179 8-127 (138)
202 2kc7_A BFR218_protein; tetratr 99.2 8.4E-11 2.9E-15 77.9 7.5 89 22-120 3-92 (99)
203 4e6h_A MRNA 3'-END-processing 99.1 5.3E-09 1.8E-13 92.7 18.0 181 6-188 365-580 (679)
204 2kc7_A BFR218_protein; tetratr 99.1 3.2E-10 1.1E-14 75.0 6.5 61 58-120 5-66 (99)
205 1klx_A Cysteine rich protein B 99.1 3.6E-09 1.2E-13 74.7 12.2 109 67-211 9-126 (138)
206 3bee_A Putative YFRE protein; 99.0 3E-09 1E-13 69.3 9.5 74 14-87 1-77 (93)
207 3qww_A SET and MYND domain-con 98.9 8.3E-09 2.9E-13 86.7 11.4 107 101-229 310-430 (433)
208 3ly7_A Transcriptional activat 98.9 7.6E-08 2.6E-12 78.0 15.9 147 44-212 185-340 (372)
209 4g26_A Pentatricopeptide repea 98.9 5.7E-07 2E-11 77.2 22.1 163 22-212 29-205 (501)
210 3qwp_A SET and MYND domain-con 98.9 9.5E-08 3.3E-12 80.4 16.2 116 60-194 294-425 (429)
211 3bee_A Putative YFRE protein; 98.9 5.6E-08 1.9E-12 63.3 11.6 70 145-214 2-75 (93)
212 3qww_A SET and MYND domain-con 98.8 3.9E-08 1.3E-12 82.6 12.7 90 30-119 309-412 (433)
213 3u64_A Protein TP_0956; tetrat 98.8 1.4E-07 4.6E-12 73.6 14.1 86 105-214 179-272 (301)
214 3u64_A Protein TP_0956; tetrat 98.8 6.4E-07 2.2E-11 69.8 17.4 55 127-182 217-273 (301)
215 3qwp_A SET and MYND domain-con 98.8 8.4E-08 2.9E-12 80.7 13.1 106 97-221 295-412 (429)
216 2v5f_A Prolyl 4-hydroxylase su 98.8 7.7E-08 2.6E-12 64.2 10.1 76 18-95 4-86 (104)
217 1pc2_A Mitochondria fission pr 98.7 3E-07 1E-11 64.8 11.4 86 34-121 13-103 (152)
218 2v5f_A Prolyl 4-hydroxylase su 98.7 2.1E-07 7.3E-12 62.0 10.1 80 91-189 7-87 (104)
219 1pc2_A Mitochondria fission pr 98.7 8.8E-08 3E-12 67.4 8.2 83 5-87 18-105 (152)
220 2uy1_A Cleavage stimulation fa 98.6 6E-06 2E-10 70.8 19.0 97 10-115 204-312 (493)
221 2uy1_A Cleavage stimulation fa 98.4 1.3E-05 4.5E-10 68.8 17.1 166 35-209 195-381 (493)
222 4h7y_A Dual specificity protei 98.2 8.7E-05 3E-09 51.5 13.8 79 149-231 61-140 (161)
223 4g26_A Pentatricopeptide repea 98.2 0.00013 4.6E-09 62.6 17.8 119 33-179 84-205 (501)
224 1nzn_A CGI-135 protein, fissio 98.1 1.2E-05 4.3E-10 54.4 8.0 86 34-120 16-105 (126)
225 3ffl_A Anaphase-promoting comp 98.1 4.8E-05 1.7E-09 53.9 11.0 95 20-114 21-147 (167)
226 4h7y_A Dual specificity protei 98.1 0.00012 4.2E-09 50.8 12.0 106 12-120 6-125 (161)
227 1nzn_A CGI-135 protein, fissio 98.0 8.1E-05 2.8E-09 50.4 10.4 81 7-87 23-108 (126)
228 3ffl_A Anaphase-promoting comp 98.0 0.00018 6.3E-09 51.0 11.4 118 55-175 22-148 (167)
229 4gns_B Protein CSD3, chitin bi 97.5 0.0043 1.5E-07 55.5 15.7 136 64-209 259-398 (754)
230 3o48_A Mitochondria fission 1 97.4 0.0013 4.4E-08 44.7 8.9 67 53-120 40-109 (134)
231 1y8m_A FIS1; mitochondria, unk 97.4 0.0018 6.3E-08 44.6 9.7 69 18-86 38-110 (144)
232 3txn_A 26S proteasome regulato 97.4 0.022 7.4E-07 47.0 17.7 174 19-212 19-211 (394)
233 3spa_A Mtrpol, DNA-directed RN 97.0 0.012 4E-07 54.2 13.2 101 90-212 128-231 (1134)
234 3o48_A Mitochondria fission 1 97.0 0.011 3.8E-07 40.2 10.1 70 18-87 39-112 (134)
235 4gns_B Protein CSD3, chitin bi 97.0 0.037 1.3E-06 49.6 15.6 114 35-175 265-397 (754)
236 3spa_A Mtrpol, DNA-directed RN 96.9 0.018 6.3E-07 52.9 13.1 98 54-179 128-231 (1134)
237 2ff4_A Probable regulatory pro 96.8 0.094 3.2E-06 43.3 15.9 105 99-211 125-234 (388)
238 1zbp_A Hypothetical protein VP 96.6 0.1 3.6E-06 40.2 13.8 60 28-87 6-65 (273)
239 1y8m_A FIS1; mitochondria, unk 96.5 0.1 3.5E-06 36.0 13.8 66 146-211 36-106 (144)
240 3kae_A CDC27, possible protein 96.5 0.12 4.2E-06 36.7 19.0 182 15-211 29-237 (242)
241 3txn_A 26S proteasome regulato 96.5 0.047 1.6E-06 45.0 12.0 102 57-178 103-210 (394)
242 3mkq_B Coatomer subunit alpha; 96.3 0.17 6E-06 36.4 13.6 54 18-79 7-60 (177)
243 2ff4_A Probable regulatory pro 96.3 0.079 2.7E-06 43.8 12.7 91 26-118 122-234 (388)
244 4b4t_P 26S proteasome regulato 96.3 0.28 9.5E-06 41.3 16.1 103 90-212 138-248 (445)
245 1ya0_A SMG-7 transcript varian 96.3 0.029 9.9E-07 47.8 9.8 78 21-100 154-231 (497)
246 3mkq_A Coatomer beta'-subunit; 96.2 0.34 1.2E-05 43.8 17.4 75 23-115 633-707 (814)
247 3mkq_B Coatomer subunit alpha; 96.1 0.18 6.1E-06 36.3 11.9 57 52-118 7-63 (177)
248 1zbp_A Hypothetical protein VP 95.9 0.33 1.1E-05 37.4 13.1 58 62-121 6-63 (273)
249 3mkq_A Coatomer beta'-subunit; 95.6 0.88 3E-05 41.1 17.5 70 26-113 606-676 (814)
250 4b4t_R RPN7, 26S proteasome re 95.3 0.077 2.6E-06 44.5 8.6 101 19-119 131-238 (429)
251 4b4t_R RPN7, 26S proteasome re 95.3 0.04 1.4E-06 46.2 6.7 108 52-180 130-239 (429)
252 4b4t_P 26S proteasome regulato 95.2 0.46 1.6E-05 40.0 13.0 97 22-118 140-247 (445)
253 1ya0_A SMG-7 transcript varian 95.1 0.2 6.7E-06 42.8 10.6 77 91-193 154-231 (497)
254 3kae_A CDC27, possible protein 94.6 0.8 2.7E-05 32.7 14.7 132 31-185 14-150 (242)
255 4fhn_B Nucleoporin NUP120; pro 94.4 1.7 6E-05 41.3 16.0 102 12-113 835-962 (1139)
256 2wpv_A GET4, UPF0363 protein Y 94.0 1.8 6.3E-05 34.3 17.4 135 35-173 13-158 (312)
257 4fhn_B Nucleoporin NUP120; pro 93.9 1.4 4.7E-05 42.0 14.3 126 24-175 817-964 (1139)
258 4b4t_S RPN3, 26S proteasome re 93.6 0.17 5.8E-06 43.0 6.8 131 30-182 147-303 (523)
259 4b4t_S RPN3, 26S proteasome re 92.9 0.89 3E-05 38.7 10.1 145 62-217 145-305 (523)
260 3lpz_A GET4 (YOR164C homolog); 92.6 3.3 0.00011 33.1 17.4 139 33-172 10-159 (336)
261 1qsa_A Protein (soluble lytic 91.5 4.7 0.00016 35.5 13.3 159 24-211 219-410 (618)
262 1qsa_A Protein (soluble lytic 90.5 4.6 0.00016 35.5 12.4 53 158-210 294-347 (618)
263 3esl_A Checkpoint serine/threo 89.3 3.1 0.0001 30.6 8.6 79 40-119 58-145 (202)
264 4ady_A RPN2, 26S proteasome re 86.2 21 0.00071 33.1 13.8 205 20-235 456-677 (963)
265 4gq2_M Nucleoporin NUP120; bet 82.2 21 0.00071 33.3 12.4 92 23-118 814-926 (950)
266 3t5x_A PCI domain-containing p 81.1 3.8 0.00013 30.2 5.9 33 20-52 15-47 (203)
267 2ynq_A ESSB; membrane protein, 78.2 9.5 0.00033 26.7 6.7 84 23-114 12-98 (161)
268 3ax2_A Mitochondrial import re 77.7 8.5 0.00029 23.0 5.5 28 58-85 22-49 (73)
269 4gq2_M Nucleoporin NUP120; bet 77.3 13 0.00046 34.5 9.5 72 11-82 832-926 (950)
270 3ax2_A Mitochondrial import re 74.1 8.3 0.00029 23.0 4.8 28 25-52 23-50 (73)
271 1wy6_A Hypothetical protein ST 73.0 20 0.00068 24.7 8.0 54 63-118 101-154 (172)
272 2rpa_A Katanin P60 ATPase-cont 72.5 4.5 0.00015 24.6 3.4 25 23-47 16-40 (78)
273 2wvi_A Mitotic checkpoint seri 72.5 4.8 0.00016 28.5 4.1 61 53-119 66-126 (164)
274 2ijq_A Hypothetical protein; s 71.5 24 0.00081 24.8 7.7 63 56-118 35-104 (161)
275 4ady_A RPN2, 26S proteasome re 70.5 69 0.0024 29.8 16.9 55 155-210 530-588 (963)
276 2crb_A Nuclear receptor bindin 70.5 11 0.00038 23.5 4.9 27 55-81 17-43 (97)
277 1om2_A Protein (mitochondrial 67.3 13 0.00044 23.5 4.8 28 58-85 25-52 (95)
278 3t5v_B Nuclear mRNA export pro 66.8 14 0.00047 31.1 6.4 88 34-121 141-253 (455)
279 4a5x_A MITD1, MIT domain-conta 66.5 14 0.00049 22.8 5.0 27 93-119 20-46 (86)
280 2crb_A Nuclear receptor bindin 63.9 16 0.00054 22.9 4.6 29 149-177 15-43 (97)
281 1om2_A Protein (mitochondrial 62.7 12 0.00039 23.7 4.0 30 23-52 24-53 (95)
282 2ijq_A Hypothetical protein; s 62.5 37 0.0013 23.8 8.3 62 21-82 34-104 (161)
283 3t5x_A PCI domain-containing p 61.5 26 0.00088 25.7 6.4 34 53-86 14-47 (203)
284 3re2_A Predicted protein; meni 60.8 25 0.00087 28.4 6.4 42 38-79 276-322 (472)
285 4a1g_A Mitotic checkpoint seri 59.9 41 0.0014 23.4 8.2 61 53-119 71-131 (152)
286 3esl_A Checkpoint serine/threo 58.9 50 0.0017 24.2 16.5 66 146-212 77-145 (202)
287 2wvi_A Mitotic checkpoint seri 58.3 46 0.0016 23.5 9.6 58 148-211 65-125 (164)
288 3re2_A Predicted protein; meni 56.8 78 0.0027 25.7 9.7 65 168-232 276-349 (472)
289 4aez_C MAD3, mitotic spindle c 55.7 35 0.0012 25.5 6.2 61 53-119 120-180 (223)
290 2rpa_A Katanin P60 ATPase-cont 55.7 14 0.00049 22.3 3.4 26 152-177 15-40 (78)
291 2w2u_A Hypothetical P60 katani 54.7 19 0.00066 22.0 4.0 33 35-82 16-48 (83)
292 2cfu_A SDSA1; SDS-hydrolase, l 54.3 22 0.00074 31.6 5.8 44 23-66 453-496 (658)
293 2w2u_A Hypothetical P60 katani 53.5 28 0.00097 21.2 4.6 25 153-177 23-47 (83)
294 2dl1_A Spartin; SPG20, MIT, st 53.0 46 0.0016 21.9 5.9 14 69-82 19-32 (116)
295 3u84_A Menin; MLL, JUND, ledgf 52.3 1E+02 0.0035 25.6 9.6 65 167-231 297-370 (550)
296 2v6y_A AAA family ATPase, P60 51.8 22 0.00077 21.7 4.0 32 36-82 9-40 (83)
297 3u84_A Menin; MLL, JUND, ledgf 50.1 45 0.0015 27.6 6.3 27 53-79 318-344 (550)
298 4b4t_O 26S proteasome regulato 50.1 1E+02 0.0036 25.1 11.9 91 27-117 84-197 (393)
299 2dl1_A Spartin; SPG20, MIT, st 49.4 33 0.0011 22.5 4.6 35 200-234 47-82 (116)
300 2v6y_A AAA family ATPase, P60 49.4 36 0.0012 20.8 4.6 22 155-176 17-38 (83)
301 4a5x_A MITD1, MIT domain-conta 46.9 41 0.0014 20.7 4.6 26 152-177 19-44 (86)
302 4gq4_A Menin; tumor suppressor 46.1 1.3E+02 0.0044 25.0 10.7 87 148-234 261-358 (489)
303 3t5v_B Nuclear mRNA export pro 46.0 36 0.0012 28.6 5.6 62 25-86 182-254 (455)
304 4b4t_O 26S proteasome regulato 45.6 1.2E+02 0.0042 24.7 10.1 59 60-118 83-156 (393)
305 2cwy_A Hypothetical protein TT 44.9 55 0.0019 20.5 7.6 59 58-118 6-68 (94)
306 4a1g_A Mitotic checkpoint seri 44.6 76 0.0026 22.0 6.7 48 37-84 83-132 (152)
307 3uzd_A 14-3-3 protein gamma; s 41.9 1.1E+02 0.0038 23.2 18.6 45 20-64 5-50 (248)
308 4gq4_A Menin; tumor suppressor 41.3 65 0.0022 26.7 6.0 27 91-117 305-331 (489)
309 1wfd_A Hypothetical protein 15 41.0 40 0.0014 21.1 4.0 32 35-81 12-43 (93)
310 2v6x_A Vacuolar protein sortin 40.5 57 0.002 19.8 4.6 23 155-177 19-41 (85)
311 3ubw_A 14-3-3E, 14-3-3 protein 38.4 1.3E+02 0.0045 23.0 16.9 58 19-76 31-90 (261)
312 2npu_A FKBP12-rapamycin comple 38.2 88 0.003 20.9 6.1 19 27-45 48-66 (126)
313 2br9_A 14-3-3E, 14-3-3 protein 37.2 1.3E+02 0.0045 22.6 19.5 45 20-64 6-51 (234)
314 2cpt_A SKD1 protein, vacuolar 37.0 42 0.0015 22.1 3.8 33 35-82 15-47 (117)
315 2cwy_A Hypothetical protein TT 36.8 77 0.0026 19.8 5.8 58 23-82 5-68 (94)
316 3fap_B FRAP, FKBP12-rapamycin 35.3 83 0.0028 19.7 6.2 54 26-82 17-73 (94)
317 2cpt_A SKD1 protein, vacuolar 34.3 67 0.0023 21.1 4.4 23 155-177 24-46 (117)
318 3iqu_A 14-3-3 protein sigma; s 33.4 1.5E+02 0.0052 22.2 14.7 57 20-76 9-67 (236)
319 2cfu_A SDSA1; SDS-hydrolase, l 33.4 83 0.0028 27.9 6.1 49 54-104 450-498 (658)
320 3myv_A SUSD superfamily protei 32.9 1.4E+02 0.0049 24.8 7.3 25 187-211 340-366 (454)
321 1wy6_A Hypothetical protein ST 31.1 1.3E+02 0.0045 20.7 15.6 55 157-211 99-154 (172)
322 2npm_A 14-3-3 domain containin 30.2 1.8E+02 0.0063 22.2 19.4 46 20-65 29-78 (260)
323 3bu8_A Telomeric repeat-bindin 28.9 1.8E+02 0.0061 21.6 8.4 65 35-101 88-160 (235)
324 3kez_A Putative sugar binding 28.4 1.6E+02 0.0056 24.5 7.0 25 187-211 343-367 (461)
325 3mcx_A SUSD superfamily protei 27.7 1.8E+02 0.006 24.4 7.1 24 187-210 362-386 (477)
326 3bqo_A Telomeric repeat-bindin 27.1 64 0.0022 23.6 3.5 28 59-86 123-150 (211)
327 3lew_A SUSD-like carbohydrate 25.9 2.1E+02 0.0072 24.1 7.2 30 53-82 203-232 (495)
328 2uwj_G Type III export protein 25.4 1.4E+02 0.0047 19.2 6.8 57 149-210 39-96 (115)
329 2yhe_A SEC-alkyl sulfatase; hy 30.8 15 0.00052 32.6 0.0 47 22-68 464-510 (668)
330 2p58_C Putative type III secre 24.7 1.4E+02 0.0049 19.1 7.8 56 150-210 41-97 (116)
331 1o9d_A 14-3-3-like protein C; 23.9 2.4E+02 0.0084 21.5 19.2 45 20-64 9-56 (260)
332 2ynq_A ESSB; membrane protein, 23.5 1.9E+02 0.0066 20.2 6.9 84 60-175 15-99 (161)
333 3bu8_A Telomeric repeat-bindin 21.9 87 0.003 23.2 3.4 41 27-67 122-162 (235)
334 2wpv_A GET4, UPF0363 protein Y 21.6 3E+02 0.01 21.7 14.4 26 181-206 132-158 (312)
335 3lvg_A Clathrin heavy chain 1; 21.0 1 3.4E-05 38.3 -7.6 60 17-81 52-111 (624)
336 2e2a_A Protein (enzyme IIA); h 20.8 1.5E+02 0.0051 19.0 4.1 30 148-177 19-48 (105)
337 2vkj_A TM1634; membrane protei 20.7 1.6E+02 0.0055 18.2 6.7 32 53-84 53-84 (106)
338 1wcr_A PTS system, N, N'-diace 20.6 1.5E+02 0.0053 18.9 4.1 29 148-176 17-45 (103)
339 3lpz_A GET4 (YOR164C homolog); 20.3 3.3E+02 0.011 21.7 15.1 25 181-205 134-159 (336)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=5.5e-26 Score=175.11 Aligned_cols=185 Identities=19% Similarity=0.153 Sum_probs=160.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++ ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL--GGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999999988 789999
Q ss_pred HHHHHHc-----------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 96 IDLYKKC-----------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 96 ~~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
|.++... |++++|+..|+++++++|. ++.++..+|.++...|+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--------------------------YAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcCC
Confidence 9999999 9999999999998887764 78888889999999999
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
+++|+..|+++++++ +++..+ ++|.++..+|++++|+..|+++++. .+++...+......+...
T Consensus 134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-
T ss_pred hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHc
Confidence 999999999999888 776665 8899999999999999999999887 444544433433333333
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.95 E-value=1.1e-25 Score=168.76 Aligned_cols=169 Identities=17% Similarity=0.154 Sum_probs=159.1
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+++..|+.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..+.+++...|+.. ..+..+
T Consensus 2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 79 (184)
T 3vtx_A 2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA--EAYYIL 79 (184)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH--HHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999999887 788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
|.++...++++.|...+.+++...|. ++.++..+|.++...|++++|+..|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~--------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTV--------------------------YADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc--------------------------chHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999998877664 7899999999999999999999999999
Q ss_pred HhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 176 QLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 176 l~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.+|+++.++ ++|.++..+|++++|+..|+++++..
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 99999998887 89999999999999999999999873
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.94 E-value=6.4e-26 Score=174.75 Aligned_cols=174 Identities=17% Similarity=0.085 Sum_probs=151.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----------CCHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-----------DRVDEAVEA 75 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~ 75 (287)
.+.+++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |++++|+..
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~ 106 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV 106 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence 344688999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 76 IKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 76 ~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
|+++++.+|+++ .++..+|.++...|++++|+..|+++++++ . ++.++..+
T Consensus 107 ~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------------------------~~~~~~~l 157 (217)
T 2pl2_A 107 LKDAERVNPRYA--PLHLQRGLVYALLGERDKAEASLKQALALE-D--------------------------TPEIRSAL 157 (217)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--------------------------CHHHHHHH
T ss_pred HHHHHHhCcccH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--------------------------chHHHHHH
Confidence 999999999988 789999999999999999999999998875 3 78999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
|.++...|++++|+..|+++++.+|+++..+ ++|.++..+|++++|+..|+++-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999998886 89999999999999999998764
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.94 E-value=2e-25 Score=198.89 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=162.6
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|++++++..+|.++...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++. .++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~--~a~ 80 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA--DAY 80 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999988 899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|.+|...|++++|++.|+++++++|. ++.+++++|.+|...|++++|+..|
T Consensus 81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--------------------------~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 81 SNMGNTLKEMQDVQGALQCYTRAIQINPA--------------------------FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999998887664 8999999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+++++++|++..++ ++|.++..+|++++|.+.++++++..
T Consensus 135 ~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 99999999998886 99999999999999999999998764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4.6e-24 Score=178.39 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=187.6
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..+.+++...|++..++..+|.++...|++++|+..|++++..+|+.+.++..+|.++...|++++|+..|+++++.+|+
T Consensus 122 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 201 (388)
T 1w3b_A 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201 (388)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34456788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
+. ..+..+|.++...|++++|+..|++++...|.. ..+ ....++.+...+++ ++..+|+++.++..+|
T Consensus 202 ~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~ 278 (388)
T 1w3b_A 202 FL--DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR-AIELQPHFPDAYCNLA 278 (388)
T ss_dssp CH--HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHTCSSCHHHHHHHH
T ss_pred cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Confidence 77 788889999999999999999999999988842 222 24467778888887 7888999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
.++...|++++|+..|+++++..|++...+ ++|.++...|++++|+..++++++.. ++....+......+...+.
T Consensus 279 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999987776 89999999999999999999999873 3444444444444444443
No 6
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=8.4e-24 Score=175.34 Aligned_cols=211 Identities=13% Similarity=0.077 Sum_probs=182.4
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
.+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|++++..+|++. .++..+|
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL--KALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999887 7899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhh------------------h-cCCChhHHHHHHHHHhhhcCCC--cHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEA------------------F-NGKPTKTARSHGKKFQVTVKQE--TSRILGNL 155 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~-~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 155 (287)
.+|...|++++|+..|+++++..|.... + ....+..+...+++ ++...|+ ++.++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE-AAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHH-HHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHH-HHHhCcCccCHHHHHHH
Confidence 9999999999999999999999885221 1 11236778888877 7888998 89999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
|.++...|++++|+..|++++...|+++..+ ++|.++...|++++|+..|+++++.. +.....+......+...+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999999998887 89999999999999999999999974 344444344444443333
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.4e-23 Score=175.55 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=187.1
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.+++...|++..++..+|.++...|++++|+..|++++..+|+...++..+|.++...|++++|+..|++++..+|++
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 168 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 34468889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
. ..+..+|.++...|++++|+..|+++++.+|.. ..+ ....++.+...+++ ++..+|+++.++..+|.
T Consensus 169 ~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 169 A--VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR-ALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp H--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH-HHHHCTTCHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCcCCHHHHHHHHH
Confidence 7 789999999999999999999999999998842 233 24467788888887 78999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++...|++++|+..|++++..+|+++..+ ++|.++...|++++|+..|+++++..
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998886 89999999999999999999999874
No 8
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=3.5e-24 Score=177.64 Aligned_cols=206 Identities=19% Similarity=0.129 Sum_probs=176.7
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+.+++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.+|...|++++|+..+++++...|++
T Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 166 (365)
T 4eqf_A 87 FMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKY 166 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccc
Confidence 34457888999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch---hhh-------h-cCCChhHHHHHHHHHhhhcCCC
Q 023081 87 AQ--------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH---GEA-------F-NGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 87 ~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~-------~-~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
.. ..+...++.++...|++++|+..|+++++..|. ... + ....+..|...+++ ++...|+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~p~ 245 (365)
T 4eqf_A 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA-ALTVRPE 245 (365)
T ss_dssp HCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCTT
T ss_pred hHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhCCC
Confidence 51 112334589999999999999999999999885 122 2 23457788888887 7889999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
++.+|..+|.++...|++++|+..|++++..+|++...+ ++|.++..+|++++|+..|+++++..+
T Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 246 DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999998876 899999999999999999999998863
No 9
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=1.9e-23 Score=161.94 Aligned_cols=177 Identities=13% Similarity=0.068 Sum_probs=157.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
.|.++..++.+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..+++++..+|++. .++.
T Consensus 3 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~ 80 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA--NAYI 80 (228)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--HHHH
T ss_pred cccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--HHHH
Confidence 356779999999999999999999999999999998 8889999999999999999999999999999999987 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
.+|.+|...|++++|+..|+++++..|.... .. .....++..+|.++...|++++|+..|+
T Consensus 81 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 81 GKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-----------IE--------KLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------HH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-----------HH--------HHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999998874110 00 0013679999999999999999999999
Q ss_pred HHHhhCCC--chHHH-HHHHHHHhccCH---------------------------HHHHHHHHHHHhcc
Q 023081 174 KAQLIDPD--ANKAC-NLSHCLIKQARY---------------------------TEARSVLEDVLLGK 212 (287)
Q Consensus 174 ~al~~~~~--~~~~~-~l~~~~~~~g~~---------------------------~~A~~~~~~~l~~~ 212 (287)
++++.+|+ +...+ ++|.++...|+. ++|+.+|+++++..
T Consensus 142 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 142 HATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999 87776 899999999888 88999999999873
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=8e-24 Score=175.84 Aligned_cols=196 Identities=13% Similarity=0.030 Sum_probs=145.3
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhhhH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-VDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 88 (287)
..|...|++..++..+|.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|++++.++|++.
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~- 166 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY- 166 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-
Confidence 34566777777888888888778888888888888888888888888888888888885 8888888888888888776
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAY 159 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~ 159 (287)
.+++.+|.++...|++++|+..|+++++++|.. .++ ....++.+...+++ ++..+|++..+|+++|.++
T Consensus 167 -~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~-al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 -QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ-LLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp -HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHhCCCCHHHHHHHHHHH
Confidence 677777888888888888888888888877732 112 12245566666666 6777888888888888888
Q ss_pred HH-cCCHHHH-----HHHHHHHHhhCCCchHHH-HHHHHHHhcc--CHHHHHHHHHHH
Q 023081 160 MQ-KGNYTSA-----EVVYRKAQLIDPDANKAC-NLSHCLIKQA--RYTEARSVLEDV 208 (287)
Q Consensus 160 ~~-~g~~~~A-----~~~~~~al~~~~~~~~~~-~l~~~~~~~g--~~~~A~~~~~~~ 208 (287)
.. .|.+++| +.+|++++.++|++..+| ++|.++...| ++++|+..++++
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 77 4554666 477888888888877776 6777777766 577777777766
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=9.1e-23 Score=166.24 Aligned_cols=201 Identities=13% Similarity=0.052 Sum_probs=155.2
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+++...|.+...+..++.++...|++++|+..+++++..+|.++.++..+|.++...| ++++|+.++++++..+|+++
T Consensus 46 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 125 (330)
T 3hym_B 46 SVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125 (330)
T ss_dssp HHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT
T ss_pred HHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH
Confidence 34677788888888888888888888888888888888888888888888888888888 88888888888888888766
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
..+..+|.++...|++++|+..|+++++..|. +..+ .....+.+...+++ ++...|+++.++..+|.+
T Consensus 126 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 126 --PAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ-ALSIAPEDPFVMHEVGVV 202 (330)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHTTCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhCCCChHHHHHHHHH
Confidence 67778888888888888888888888887763 2222 24456777777776 677778888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhC---------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 159 YMQKGNYTSAEVVYRKAQLID---------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~---------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+...|++++|+..+++++... |.....+ .+|.++...|++++|+..++++++..
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 888888888888888888765 3344444 78888888888888888888888763
No 12
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.9e-23 Score=162.53 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=182.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-----HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-----QESLD 92 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~ 92 (287)
.+..++.+|.++...|++++|+..|++++..+ .++.++..+|.++...|++++|+..++++++..|+.. ...++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 8889999999999999999999999999999998751 12688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
..+|.++...|++++|+..|++++.+.|.+..+ .....+.+...++. .+..+|.++.++..+|.++...|++++|+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA-EAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999877666 33356667777776 6778898999999999999999999999999
Q ss_pred HHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 172 YRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 172 ~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
|++++..+|.++..+ .+|.++...|++++|+..++++++. .+.....+......+...+.
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHhh
Confidence 999999999998776 8999999999999999999999987 34444444444555544443
No 13
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.92 E-value=4.7e-24 Score=177.22 Aligned_cols=166 Identities=9% Similarity=0.026 Sum_probs=148.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccchh
Q 023081 44 KAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQKLRMIYHG 122 (287)
Q Consensus 44 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~ 122 (287)
.++..+|++..++..+|.++...|++++|+..+++++.++|++. .+++.+|.++...|+ +++|+..|+++++++|..
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~--~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY--TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH--HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 35677888999999999999999999999999999999999988 899999999999997 999999999999999942
Q ss_pred --------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 123 --------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 123 --------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.++ ....+..+...+++ ++.++|++..+|+++|.++...|++++|+.+|++++.++|++..+| ++|.++
T Consensus 166 ~~a~~~~g~~~~~~g~~~eAl~~~~k-al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 166 YQVWHHRRVLVEWLRDPSQELEFIAD-ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222 22356778888887 8999999999999999999999999999999999999999999887 899999
Q ss_pred Hh-ccCHHHH-----HHHHHHHHhcc
Q 023081 193 IK-QARYTEA-----RSVLEDVLLGK 212 (287)
Q Consensus 193 ~~-~g~~~~A-----~~~~~~~l~~~ 212 (287)
.. .|..++| +.+|++++...
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 99 5555788 58999999984
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=2.1e-22 Score=166.76 Aligned_cols=199 Identities=15% Similarity=0.093 Sum_probs=177.1
Q ss_pred HhhcCCCC----chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 11 VVHKLPPG----DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 11 ~l~~~p~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
++...|++ ...++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 52 a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 131 (368)
T 1fch_A 52 GYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131 (368)
T ss_dssp CCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC
Confidence 44455554 56799999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC------------------------CChhHHHHHHHHHhh
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG------------------------KPTKTARSHGKKFQV 142 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~~a~~~~~~~~~ 142 (287)
. .++..+|.+|...|++++|+..|++++...|....... ..+..+...+++ ++
T Consensus 132 ~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~ 208 (368)
T 1fch_A 132 Q--TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA-AV 208 (368)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH-HH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHH-HH
Confidence 7 78999999999999999999999999999885333211 124566666666 68
Q ss_pred hcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 143 TVKQE--TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 143 ~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
...|. ++.++..+|.++...|++++|+..|++++..+|+++..+ ++|.++...|++++|+..|+++++..
T Consensus 209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88898 899999999999999999999999999999999998776 89999999999999999999999873
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=2.9e-22 Score=163.21 Aligned_cols=197 Identities=13% Similarity=0.049 Sum_probs=92.1
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
+...|+++..++.+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..++++++.+|+++ .+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~ 92 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP--VS 92 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HH
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HH
Confidence 3344444445555555555555555555555555555555444444455555555555555555555555554444 34
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCG-RLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 92 ~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
+..+|.++...| ++++|+..|+++++..|.. ..+ ....+..+...+++ ++...|++..++..+|.++..
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT-AAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhccccHHHHHHHHHHHHH
Confidence 444455555555 4555555555555444421 111 11233444444444 344444444444445555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..+++++...|+++..+ .+|.++...|++++|+..++++++.
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 5555555555555555555444443 4555555555555555555554443
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.6e-22 Score=172.00 Aligned_cols=204 Identities=14% Similarity=0.043 Sum_probs=179.5
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
..+..++..+|+++..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++.+|+
T Consensus 13 ~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 13 LGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh----h-------------------h-cCCChhHHHHHHHHHh
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE----A-------------------F-NGKPTKTARSHGKKFQ 141 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~-------------------~-~~~~~~~a~~~~~~~~ 141 (287)
+. .++..+|.+|...|++++|+..|+++++..|... . + ....+..+...++. .
T Consensus 93 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~ 169 (450)
T 2y4t_A 93 FT--AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK-I 169 (450)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-H
T ss_pred cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-H
Confidence 87 7899999999999999999999999999988543 1 1 23356777777777 6
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+...|.++.++..+|.+|...|++++|+..|++++..+|+++..+ .+|.++...|++++|+..|++++...
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888999999999999999999999999999999999999998886 89999999999999999999999874
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=2.9e-22 Score=156.30 Aligned_cols=191 Identities=16% Similarity=0.092 Sum_probs=117.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++. .++..+|.+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA--TAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch--HHHHHHHHH
Confidence 344555555555555555555555555555555555555555555555555555555555555555444 445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
+...|++++|+..++++++..|. +..+ ....++.+...+++ ++...|+++.++..+|.++...|++++|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR-AVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555555555442 1111 12234444444444 45555668899999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+++++...|++...+ .+|.++..+|++++|...++++++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999988776 89999999999999999999999873
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3.1e-22 Score=164.74 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=180.4
Q ss_pred hhhHhhcCC---CCchHHHHh------------HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLP---PGDSPYVRA------------KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p---~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...| ++..++..+ |.++...|++++|+..|++++...|.++.++..+|.++...|++++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHH
Confidence 345777788 888888777 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------------------hh-cCCChh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------------------AF-NGKPTK 131 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------~~-~~~~~~ 131 (287)
+..+++++...|+++ ..+..+|.++...|++++|+..|+++++..|... .+ ....+.
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 174 ISDLKAASKLKSDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp HHHHHHHHTTCSCCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999887 7899999999999999999999999999888422 12 345677
Q ss_pred HHHHHHHHHhhhcCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 132 TARSHGKKFQVTVKQETSR----ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
.+...++. .+...|+++. ++..+|.++...|++++|+..|++++..+|+++..+ .+|.++...|++++|...|+
T Consensus 252 ~A~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 330 (359)
T 3ieg_A 252 DATSKYES-VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330 (359)
T ss_dssp HHHHHHHH-HHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887 6778888764 466799999999999999999999999999998876 89999999999999999999
Q ss_pred HHHhccc
Q 023081 207 DVLLGKL 213 (287)
Q Consensus 207 ~~l~~~~ 213 (287)
++++..+
T Consensus 331 ~a~~~~p 337 (359)
T 3ieg_A 331 AAQEHNE 337 (359)
T ss_dssp HHHTTCT
T ss_pred HHHhcCC
Confidence 9999843
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=2.1e-22 Score=166.82 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=189.2
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++.
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHhccch---hhh-------h-cCCChhHHHHHHHHHhh
Q 023081 88 QESLDN--------------VLIDLYKKCGRLDEQIELLKQKLRMIYH---GEA-------F-NGKPTKTARSHGKKFQV 142 (287)
Q Consensus 88 ~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~-------~-~~~~~~~a~~~~~~~~~ 142 (287)
...... .++.++ ..|++++|+..|+++++..|. ... + ....++.+...+++ ++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al 244 (368)
T 1fch_A 167 HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-AL 244 (368)
T ss_dssp GGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Confidence 211111 456666 889999999999999999886 222 2 24467888888887 78
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCC-----
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGS----- 216 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~----- 216 (287)
...|+++.++..+|.++...|++++|+..|++++..+|++...+ ++|.++..+|++++|+..|+++++..+...
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 88999999999999999999999999999999999999998776 899999999999999999999998754331
Q ss_pred ---CchhHHHHHHHHHHhcccc
Q 023081 217 ---TETKTINRVKELLQELEPW 235 (287)
Q Consensus 217 ---~~~~~~~~~~~~l~~l~~~ 235 (287)
.....+......+..++..
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCG
T ss_pred ccchhhHHHHHHHHHHHHhCCh
Confidence 1134444445555555543
No 20
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.1e-22 Score=168.92 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=178.8
Q ss_pred hhhHhhcCCCCc---hHHHHh------------HHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLPPGD---SPYVRA------------KHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p~~~---~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...|++. .++..+ |..+...|++++|+..|++++...|.++.++..+|.+|...|++++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHH
Confidence 345777888877 665555 66799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------------------hh-cCCChh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------------------AF-NGKPTK 131 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------~~-~~~~~~ 131 (287)
+..|++++..+|+++ ..+..+|.+|...|++++|+..|++++...|... .+ ....+.
T Consensus 197 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (450)
T 2y4t_A 197 ISDLKAASKLKNDNT--EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 274 (450)
T ss_dssp HHHHHHHHHHHCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999887 7899999999999999999999999999888422 22 234567
Q ss_pred HHHHHHHHHhhhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 132 TARSHGKKFQVTVKQETS----RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
.+...++. ++...|+++ .++..+|.++...|++++|+..+++++..+|+++..+ .+|.++...|++++|+..|+
T Consensus 275 ~A~~~~~~-~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 275 DATSKYES-VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp HHHHHHHH-HHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 78888777 677888874 4789999999999999999999999999999998886 89999999999999999999
Q ss_pred HHHhccc
Q 023081 207 DVLLGKL 213 (287)
Q Consensus 207 ~~l~~~~ 213 (287)
++++..+
T Consensus 354 ~al~~~p 360 (450)
T 2y4t_A 354 TAQEHNE 360 (450)
T ss_dssp HHHTTSS
T ss_pred HHHHhCc
Confidence 9999843
No 21
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.91 E-value=3.6e-22 Score=158.03 Aligned_cols=213 Identities=15% Similarity=0.056 Sum_probs=167.9
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-H
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-Q 88 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~ 88 (287)
...|+++..++.+|..++..|++++|+..|++++...|++ +.+++.+|.++...|++++|+..|+++++..|+++ .
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 4578889999999999999999999999999999999998 89999999999999999999999999999988543 2
Q ss_pred HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 89 ESLDNVLIDLYKK--------CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 89 ~~~~~~l~~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..++..+|.++.. .|++++|+..|+++++.+|..... ..+...+ ....+.....++.+|.+|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-----~~a~~~~----~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV-----DDATQKI----RELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH-----HHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH-----HHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 2578899999999 999999999999999998852210 0111100 1111123455789999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhc----------cCHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQ----------ARYTEARSVLEDVLLGKLSGSTETKTINRVK 226 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~----------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 226 (287)
..|++++|+..|++++...|+++ ..+ .+|.++..+ |++++|+..|+++++..+.++..........
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999853 344 899999877 9999999999999998644333333333344
Q ss_pred HHHHhccc
Q 023081 227 ELLQELEP 234 (287)
Q Consensus 227 ~~l~~l~~ 234 (287)
.....++.
T Consensus 240 ~~~~~~~~ 247 (261)
T 3qky_A 240 RARQRLTE 247 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1e-21 Score=161.64 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=173.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
+++.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|++. .++..+|.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT--AARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc--hHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999877 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccc---hh--------------------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIY---HG--------------------EAF-NGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~---~~--------------------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
++...|++++|+..|+++++..| .. ..+ ....++.+...++. .+...|+++.++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK-ILEVCVWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCchHHHH
Confidence 99999999999999999999888 31 222 24457778888777 6888999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+|.++...|++++|+..+++++...|+++..+ .+|.++...|++++|+..++++++..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999998886 899999999999999999999998743
No 23
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.90 E-value=9.8e-23 Score=174.73 Aligned_cols=190 Identities=16% Similarity=0.082 Sum_probs=137.2
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDP-EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
.....|+++..++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.+|...|++++|+.+|+++++.+|+ .
T Consensus 94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-- 170 (474)
T 4abn_A 94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-- 170 (474)
T ss_dssp HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--
T ss_pred HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--
Confidence 4556788999999999999999999 99999999999999999999999999999999999999999999999998 4
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccchh--------hhh-cC--------CChhHHHHHHHHHhhh
Q 023081 90 SLDNVLIDLYKKC---------GRLDEQIELLKQKLRMIYHG--------EAF-NG--------KPTKTARSHGKKFQVT 143 (287)
Q Consensus 90 ~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~~~~--------~~~-~~--------~~~~~a~~~~~~~~~~ 143 (287)
.++..+|.++... |++++|+..|+++++++|.. .++ .. ..++.|...+++ ++.
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~-al~ 249 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ-AEK 249 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH-HHH
Confidence 6899999999999 99999999999999887741 111 00 123333333333 344
Q ss_pred cCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHH
Q 023081 144 VKQ---ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSV 204 (287)
Q Consensus 144 ~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~ 204 (287)
.+| +++.+|+++|.+|...|++++|+..|+++++++|++...+ .++.++..+|++++|+..
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4455555555555555555555555555555555544443 455555555544444443
No 24
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=3.1e-22 Score=158.97 Aligned_cols=203 Identities=11% Similarity=-0.002 Sum_probs=174.4
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG--DRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
-+.++++..|++..+++.+|.++...|++++|+..|++++... +.. ..++..+|.++...|++++|+.+|+++++.+
T Consensus 25 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~ 104 (272)
T 3u4t_A 25 VFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD 104 (272)
T ss_dssp HHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 3445788899999999999999999999999999999999833 222 4568999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------h-hhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------G-EAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
|++. .++..+|.+|...|++++|+..|+++++..|. + ..+....++.|...+++ ++...|+++.++..
T Consensus 105 ~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~ 181 (272)
T 3u4t_A 105 TTRL--DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK-VLELKPNIYIGYLW 181 (272)
T ss_dssp TTCT--HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHH
T ss_pred cccH--HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCccchHHHHH
Confidence 9887 78999999999999999999999999998873 3 33444577888888887 78899999999999
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHhhC---CCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGN---YTSAEVVYRKAQLID---PDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 155 lg~~~~~~g~---~~~A~~~~~~al~~~---~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|.++...|+ +++|+..|++++... |+. ...+ .+|.++...|++++|+.+|+++++..
T Consensus 182 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 182 RARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999876 432 1233 79999999999999999999999983
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=6.6e-22 Score=160.92 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=166.7
Q ss_pred cCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 14 KLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 14 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.+| .+...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++. ..+
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~ 92 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVH 92 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH--HHH
Confidence 344 35677899999999999999999999999999999999999999999999999999999999999999877 788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---c--------------C-------CChhHHHHHHHHHhhhcCCCc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF---N--------------G-------KPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~--------------~-------~~~~~a~~~~~~~~~~~~~~~ 148 (287)
..+|.++...|++++|+..++++++..|..... . + ...+.+...++. .+...|++
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA-ALEMNPND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHH-HHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH-HHhhCCCC
Confidence 889999999999999999999999988742211 0 1 124566666666 67788888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.++..+|.++...|++++|+..+++++..+|++...+ .+|.++...|++++|+..++++++..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999988887776 88999999999999999999988874
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.90 E-value=3.6e-21 Score=148.18 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=145.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|+++..++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|++. ..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 80 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINN 80 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh--HHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999877 7888
Q ss_pred HHHHHHHHc-CCHHHHHHHHHHHHh--ccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 94 VLIDLYKKC-GRLDEQIELLKQKLR--MIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 94 ~l~~~~~~~-g~~~~A~~~~~~al~--~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+|.++... |++++|+..++++++ ..|. +..+ .....+.+...++. .+...|.++.++..+|.++..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKR-SLAAQPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHH
Confidence 999999999 999999999999998 3331 1111 12334455555554 455555556666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCC-CchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 162 KGNYTSAEVVYRKAQLIDP-DANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~-~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.|++++|+..+++++...| ++...+ .++.++...|+.++|..+++.+.+.
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 6666666666666666655 554443 4555555566666666665555544
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7.7e-22 Score=155.10 Aligned_cols=192 Identities=13% Similarity=0.092 Sum_probs=154.8
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-------DSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.+++... +++.+++.+|.++...|++++|+..|++++...|.. +.++..+|.++...|++++|+.++++++.
T Consensus 29 ~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 29 NKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 3566777 889999999999999999999999999999988776 78999999999999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
..|.. .++...|++++|+..+++++...|. +..+ ....++.+...+++ ++...|.++.++
T Consensus 108 ~~~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~ 176 (258)
T 3uq3_A 108 EHRTA----------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE-MIKRAPEDARGY 176 (258)
T ss_dssp HCCCH----------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred cCchh----------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCcccHHHH
Confidence 66542 1233335555555555555555542 1111 12334455555554 455566689999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|.++...|++++|+..|++++..+|+++..+ .+|.++..+|++++|+..|+++++..
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998876 89999999999999999999999874
No 28
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=2.9e-21 Score=151.69 Aligned_cols=197 Identities=15% Similarity=0.028 Sum_probs=171.0
Q ss_pred hcCCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHH
Q 023081 13 HKLPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 13 ~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
..+|+. +..++.+|.++...|++++|+..|++++..+|..+.++..+|.++...|++++|+..++++++..|.+. .+
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~ 107 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA--RV 107 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HH
Confidence 345655 788999999999999999999999999999999999999999999999999999999999999999877 78
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--ccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLR--MIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
+..+|.++...|++++|+..|++++. ..|. +..+ .....+.+...+++ ++...|.++.++..+|.++.
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK-SLRLNRNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCcccHHHHHHHHHHHH
Confidence 89999999999999999999999999 5552 1222 24456777777777 67788888999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 161 QKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|++++|+..+++++...|++...+ .++.++...|++++|..+++++++..
T Consensus 187 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999888887765 78899999999999999999998873
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.2e-21 Score=156.13 Aligned_cols=202 Identities=15% Similarity=0.170 Sum_probs=177.7
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-+++...|++..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 123 (327)
T 3cv0_A 44 FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 123 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred HHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhh
Q 023081 88 QESLDNVL--------------ID-LYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVT 143 (287)
Q Consensus 88 ~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~ 143 (287)
..+..+ +. ++...|++++|+..++++++..|. +..+ .....+.+...+++ ++.
T Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~ 200 (327)
T 3cv0_A 124 --QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR-AVE 200 (327)
T ss_dssp --TC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH-HHH
T ss_pred --HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH-HHH
Confidence 344433 44 577889999999999999999874 2222 34567888888887 788
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|+++.++..+|.++...|++++|+..|++++...|++...+ .+|.++..+|++++|+..++++++..
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999999999999999998776 89999999999999999999999874
No 30
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=4e-21 Score=169.16 Aligned_cols=199 Identities=13% Similarity=0.073 Sum_probs=123.3
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQE 89 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 89 (287)
+++...|++..++..++.++...|++++|+..+++++...|+++.++..+|.+|...|++++|+.+|+++++..|++.
T Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 407 (597)
T 2xpi_A 330 KILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG-- 407 (597)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred HHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH--
Confidence 355556666666666666666666666666666666666666666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
..+..++.+|...|++++|++.|+++++..|.. ..+ .....+.+...++. .+...|.++.+|..+|.++.
T Consensus 408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS-SYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCChHHHHHHHHHHH
Confidence 456666666666666666666666666665521 111 12245555555555 45556666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCc-hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 161 QKGNYTSAEVVYRKAQLI------DPDA-NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 161 ~~g~~~~A~~~~~~al~~------~~~~-~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|++++|+..|+++++. +|+. ...+ .+|.++...|++++|+..|+++++.
T Consensus 487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 666666666666666665 3332 2333 5666666666666666666666655
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.89 E-value=4.4e-22 Score=152.22 Aligned_cols=167 Identities=14% Similarity=0.099 Sum_probs=146.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKD----------------MAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
+.+.++..|..+...|++++|+..|++++..+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 82 LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 82 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
.+|+++ .++..+|.++...|++++|+..|+++++++|. ++.+++++|.+|..
T Consensus 83 ~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 83 KAPNNV--DCLEACAEMQVCRGQEKDALRMYEKILQLEAD--------------------------NLAANIFLGNYYYL 134 (208)
T ss_dssp HCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHH
T ss_pred HCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------------CHHHHHHHHHHHHH
Confidence 999988 88999999999999999999999998888764 89999999999987
Q ss_pred cCC--HHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 162 KGN--YTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~--~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.|+ ...+...+++++...|.....+++|.++..+|++++|+..|+++++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 764 456677888776433322233488999999999999999999999985
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.89 E-value=4e-21 Score=150.85 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=149.7
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh----
Q 023081 48 AGDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG---- 122 (287)
Q Consensus 48 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---- 122 (287)
.+|.. +.++..+|.++...|++++|+..+++++...|++. .++..+|.++...|++++|+..|+++++..|..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 108 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA--DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVL 108 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHH
Confidence 45554 78899999999999999999999999999999887 789999999999999999999999999998732
Q ss_pred ----hhh-cCCChhHHHHHHHHHhhh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh
Q 023081 123 ----EAF-NGKPTKTARSHGKKFQVT--VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK 194 (287)
Q Consensus 123 ----~~~-~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~ 194 (287)
..+ ....++.+...+++ .+. ..|.++.++..+|.++...|++++|+.+|++++...|.+...+ .+|.++..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLE-ASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 222 34467888888887 566 6788899999999999999999999999999999999987776 89999999
Q ss_pred ccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHh
Q 023081 195 QARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
+|++++|...++++++.. +.....+.........
T Consensus 188 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG---GQNARSLLLGIRLAKV 221 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS---CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHH
Confidence 999999999999999873 3444333333333333
No 33
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.89 E-value=2.7e-21 Score=144.18 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=156.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
....++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+.++++++...|++. .++..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~ 84 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV--KVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999999877 78889999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
++...|++++|+..+++++...|. ++.++..+|.++...|++++|+.++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPI--------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcH--------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 999999999999999998877654 788899999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|+++..+ .+|.++...|++++|..+++++++..+
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999997776 899999999999999999999998753
No 34
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.88 E-value=1.1e-22 Score=147.24 Aligned_cols=146 Identities=10% Similarity=0.028 Sum_probs=129.8
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g 103 (287)
.||.++..+|++++|+..+++++..+|+.+..++.+|.+|...|++++|+.+|+++++++|+++ .++..+|.+|...|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP--KAHRFLGLLYELEE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcC
Confidence 4788889999999999999999999999989999999999999999999999999999999988 89999999999999
Q ss_pred CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCc
Q 023081 104 RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV-YRKAQLIDPDA 182 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~ 182 (287)
++++|+..|+++++++|. ++.+++.+|.++...|++++|... ++++++++|++
T Consensus 80 ~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT--------------------------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred chHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 999999999998887664 899999999999999999887765 59999999999
Q ss_pred hHHH-HHHHHHHhccC
Q 023081 183 NKAC-NLSHCLIKQAR 197 (287)
Q Consensus 183 ~~~~-~l~~~~~~~g~ 197 (287)
+.++ ..+.++...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9887 67888887775
No 35
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=2.5e-20 Score=164.08 Aligned_cols=194 Identities=12% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.+...+..+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++...|++. ..+..+
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l 379 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA--VTWLAV 379 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSH--HHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccH--HHHHHH
Confidence 667888888888888888888888888888888888888888888888888888888888888888888776 677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhh-h-------h-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGE-A-------F-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~-~-------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+.+|...|++++|+..|+++++..|... . + .....+.|...+++ .+...|+++.++..+|.+|...|+++
T Consensus 380 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT-AARLFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHTTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCccchHHHHHHHHHHHHcCCHH
Confidence 8888888888888888888888776422 2 2 23356677777776 56778888888888888888888888
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|+..|++++...|+++..+ .+|.++...|++++|+..|+++++..
T Consensus 459 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 88888888888888887776 78888888888888888888888763
No 36
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.88 E-value=6.7e-22 Score=169.54 Aligned_cols=164 Identities=13% Similarity=-0.003 Sum_probs=148.6
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ---------DRVDEAVEAIK 77 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~ 77 (287)
.+.++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+ ..++..+|.++... |++++|+..|+
T Consensus 125 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~ 203 (474)
T 4abn_A 125 LLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHH
Confidence 344688999999999999999999999999999999999999999 69999999999999 99999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhccc---hh--------hhh-cCCChhHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKC--------GRLDEQIELLKQKLRMIY---HG--------EAF-NGKPTKTARSHG 137 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~~---~~--------~~~-~~~~~~~a~~~~ 137 (287)
++++.+|++. .++..+|.+|... |++++|+..|+++++++| .. ..+ ....++.|...+
T Consensus 204 ~al~~~p~~~--~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 281 (474)
T 4abn_A 204 LAVQMDVLDG--RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281 (474)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988 7899999999999 999999999999999988 32 222 244678888888
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
++ ++..+|+++.++..++.++...|++++|+..+.+
T Consensus 282 ~~-al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 282 SQ-AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HH-HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88 7999999999999999999999999999886654
No 37
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.88 E-value=3.6e-21 Score=144.04 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=142.0
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
+.+.++++.+|+++.+++.+|.++...|++++|+..+.+++...|+.+.++..+|.++...++++.|...+.+++...|+
T Consensus 26 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 105 (184)
T 3vtx_A 26 RAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV 105 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 86 QAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
+. .++..+|.+|...|++++|+..|+++++++|. ++.+++++|.+|...|++
T Consensus 106 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 106 YA--DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--------------------------FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCH
T ss_pred ch--HHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--------------------------hhhHHHHHHHHHHHCCCH
Confidence 87 78999999999999999999999998887664 899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCchH
Q 023081 166 TSAEVVYRKAQLIDPDANK 184 (287)
Q Consensus 166 ~~A~~~~~~al~~~~~~~~ 184 (287)
++|+..|+++++++|+++.
T Consensus 158 ~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCCccCHH
Confidence 9999999999999997653
No 38
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.88 E-value=1.2e-20 Score=151.67 Aligned_cols=190 Identities=15% Similarity=0.069 Sum_probs=166.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
.|....++..++..+...+++++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |++. .++
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~--~~~ 133 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL--ECM 133 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH--HHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH--HHH
Confidence 4555677788899999999999999999999876 599999999999999999999999999988 6666 688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhh------hh----c-CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----N-GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
..+|.++...|++++|+..|+++++..|... .+ . ...++.|...+++ .+...|+++.+++.+|.++..
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~-~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE-MADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH-HHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHH
Confidence 8899999999999999999999999988532 22 1 2457778888887 678899999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH-HHHHHHHHHhcc
Q 023081 162 KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE-ARSVLEDVLLGK 212 (287)
Q Consensus 162 ~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~-A~~~~~~~l~~~ 212 (287)
.|++++|+..|++++..+|+++..+ ++|.++..+|+..+ +..+++++++..
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998887 99999999999976 568999999883
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.4e-20 Score=159.80 Aligned_cols=208 Identities=15% Similarity=0.101 Sum_probs=177.3
Q ss_pred cccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 023081 4 TRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH-- 81 (287)
Q Consensus 4 ~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-- 81 (287)
+...+-+++..+|+++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+ ++.
T Consensus 44 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~ 122 (537)
T 3fp2_A 44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLN 122 (537)
T ss_dssp CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC
Confidence 33445568899999999999999999999999999999999999999999999999999999999999988763 332
Q ss_pred --------------------------------------------------------------------------------
Q 023081 82 -------------------------------------------------------------------------------- 81 (287)
Q Consensus 82 -------------------------------------------------------------------------------- 81 (287)
T Consensus 123 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (537)
T 3fp2_A 123 GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------hchhhh-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh---
Q 023081 82 ----------------------------LCSKQA-----QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--- 125 (287)
Q Consensus 82 ----------------------------~~p~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 125 (287)
..|++. ...++..+|.++...|++++|+..|+++++..|....+
T Consensus 203 ~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 282 (537)
T 3fp2_A 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282 (537)
T ss_dssp HHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHH
Confidence 222221 12346778889999999999999999999998863332
Q ss_pred -----cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHH
Q 023081 126 -----NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYT 199 (287)
Q Consensus 126 -----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~ 199 (287)
....+..+...+++ .+...|+++.++..+|.++...|++++|+..|++++..+|++...+ .+|.++...|+++
T Consensus 283 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 283 ALTLADKENSQEFFKFFQK-AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHTCCSSCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 23357888888887 7888999999999999999999999999999999999999998776 8999999999999
Q ss_pred HHHHHHHHHHhccc
Q 023081 200 EARSVLEDVLLGKL 213 (287)
Q Consensus 200 ~A~~~~~~~l~~~~ 213 (287)
+|+..++++++..+
T Consensus 362 ~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 362 ESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998843
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=9e-21 Score=147.81 Aligned_cols=176 Identities=14% Similarity=0.089 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GE 123 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~ 123 (287)
.+.+++.+|.++...|++++|+..|++++...|++. ..+..+|.++...|++++|+..|+++++..|. +.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 357789999999999999999999999999999887 78899999999999999999999999999873 22
Q ss_pred hh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHH
Q 023081 124 AF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 124 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A 201 (287)
.+ ....++.+...+++ .+...|.++.++..+|.++...|++++|+..+++++...|++...+ .+|.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEK-ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHH-HHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 22 34567888888887 6888999999999999999999999999999999999999998776 899999999999999
Q ss_pred HHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 202 RSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+..++++++.. +.+...+..........+
T Consensus 179 ~~~~~~~~~~~---~~~~~~~~~la~~~~~~~ 207 (243)
T 2q7f_A 179 LSQFAAVTEQD---PGHADAFYNAGVTYAYKE 207 (243)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHHcc
Confidence 99999999873 344444444444444433
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=1.9e-20 Score=148.67 Aligned_cols=193 Identities=16% Similarity=0.099 Sum_probs=166.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--HHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--QESLDNVL 95 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~~~l 95 (287)
+++.++..|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++. .|+++ ....+..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999 44332 12458899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
|.++...|++++|+..|+++++..|. +..+ ....++.|...+++ ++..+|.++.++..+|...+..++++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK-QIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG-GCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH-HhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999884 2233 34567888888887 78889999999999995555566999
Q ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHhccC---HHHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR---YTEARSVLEDVLLGK 212 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~---~~~A~~~~~~~l~~~ 212 (287)
+|+..|+++++..|++...+ .+|.++..+|+ +++|+..|+++++..
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999997775 89999999998 888999999999875
No 42
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=2.6e-20 Score=150.98 Aligned_cols=209 Identities=7% Similarity=-0.040 Sum_probs=178.3
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHh-------hCCH-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLV-------EKDP-------EAAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDE 71 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~ 71 (287)
.+-+++..+|+++.+|+.+|..+.. .|++ ++|+..|++++. .+|++..+|..+|.++...|++++
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~ 117 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 117 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 3446888899999999999999874 4886 999999999999 799999999999999999999999
Q ss_pred HHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------hh----cCCChhHHHHHHHHH
Q 023081 72 AVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------AF----NGKPTKTARSHGKKF 140 (287)
Q Consensus 72 A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~~----~~~~~~~a~~~~~~~ 140 (287)
|...|+++++..|.++ . ++..++.++...|++++|+..|+++++..|... +. .....+.+...+++
T Consensus 118 A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~- 194 (308)
T 2ond_A 118 VHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL- 194 (308)
T ss_dssp HHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH-
T ss_pred HHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 9999999999999876 4 788999999999999999999999999877321 11 13466778888877
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-chHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLI---DPD-ANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
++...|+++.+|..+|.++...|++++|...|++++.. .|+ ....| .++..+...|+.++|...++++++..+.+
T Consensus 195 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 78888999999999999999999999999999999985 444 45566 78888899999999999999999886544
Q ss_pred CCc
Q 023081 216 STE 218 (287)
Q Consensus 216 ~~~ 218 (287)
...
T Consensus 275 ~~~ 277 (308)
T 2ond_A 275 YEG 277 (308)
T ss_dssp TSS
T ss_pred ccc
Confidence 333
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.87 E-value=1.1e-20 Score=150.07 Aligned_cols=193 Identities=10% Similarity=-0.056 Sum_probs=166.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|++. .++..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l 117 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT--HHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc--HHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999999999887 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
|.+|...|++++|+..|+++++..|..... .......+...++. .+...|.+...+. ++.++...++.++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ-HFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999999999999999998853321 12245667777765 5666676655554 7778889999999
Q ss_pred HHHHHHHHHhhCCCc----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDA----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|+..+++++...|.. ...+ .+|.++..+|++++|+..|+++++..
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999877653 3444 89999999999999999999999874
No 44
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.87 E-value=5.2e-20 Score=142.40 Aligned_cols=189 Identities=11% Similarity=-0.005 Sum_probs=152.8
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~ 93 (287)
++..++.+|..+...|++++|+..|++++...|.. ..+++.+|.++...|++++|+..|+++++.+|++.. ..++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46788999999999999999999999999998876 478999999999999999999999999999998752 13577
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 94 VLIDLYKK------------------CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 94 ~l~~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+|.++.. .|++++|+..|+++++.+|..... ..+..... ............+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a-----~~a~~~l~----~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT-----TDATKRLV----FLKDRLAKYEYSV 153 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH-----HHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH-----HHHHHHHH----HHHHHHHHHHHHH
Confidence 78888776 579999999999999999853211 01111100 0011123445789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCch---HHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 156 GWAYMQKGNYTSAEVVYRKAQLIDPDAN---KAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 156 g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
|.+|...|++++|+..|+++++..|+++ .++ .+|.++..+|++++|+..++.+....+.+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 9999999999999999999999999985 334 89999999999999999999988875433
No 45
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.86 E-value=4.6e-21 Score=142.59 Aligned_cols=168 Identities=13% Similarity=0.067 Sum_probs=140.9
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNV 94 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~ 94 (287)
+|...+.++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...| ++ .....
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~~ 78 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKSL 78 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHHH
Confidence 5677788999999999999999999999999999999999999999999999999999999999999998 55 33333
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 95 LIDLY-KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 95 l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
++.+. ...+...+|+..++++++.+| +++.+++.+|.++...|++++|+..|+
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANP--------------------------DNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHST--------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44332 222344456777777666655 489999999999999999999999999
Q ss_pred HHHhhCCCc--hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 174 KAQLIDPDA--NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 174 ~al~~~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++..+|+. +..+ ++|.++..+|+.++|+..|++++..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999986 3455 8999999999999999999999864
No 46
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=1.6e-20 Score=167.68 Aligned_cols=167 Identities=13% Similarity=-0.031 Sum_probs=128.9
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAI--------NAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
..+|+++.+++..| ...|++++|++.|++++ ..+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888888777 77899999999999999 88899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
++. .++..+|.++...|++++|+..|+++++++|. ++.+++++|.++...|+
T Consensus 465 ~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 465 WRW--RLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--------------------------ELAPKLALAATAELAGN 516 (681)
T ss_dssp CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------------CSHHHHHHHHHHHHHTC
T ss_pred chH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHcCC
Confidence 887 78999999999999999999999999888774 45555555555555555
Q ss_pred HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 165 YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+++ +..|+++++++|++..++ ++|.++..+|++++|+..|+++++.
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 555 555555555555554443 5555555555555555555555544
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=6.9e-20 Score=159.14 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=175.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.+++...|+ ..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++...|++
T Consensus 265 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 343 (537)
T 3fp2_A 265 LLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343 (537)
T ss_dssp HHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 34457788888 89999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCc------HHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQET------SRI 151 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~ 151 (287)
. ..+..+|.++...|++++|+..++++++..|.. ..+ ....++.+...+++ ++...|++ ...
T Consensus 344 ~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 344 V--YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI-AKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp S--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHCSSCSSTTHH
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH-HHHcCCcchhhHHHHHH
Confidence 7 788899999999999999999999999988742 222 24467777777776 45554443 344
Q ss_pred HHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 152 LGNLGWAYMQK----------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 152 ~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+..+|.++... |++++|+..|++++..+|++...+ .+|.++..+|++++|+..|+++++..
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 67778999999 999999999999999999998876 89999999999999999999999984
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.1e-20 Score=158.44 Aligned_cols=201 Identities=15% Similarity=0.109 Sum_probs=170.2
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+.+++...|+ ..+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|++.
T Consensus 260 ~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 338 (514)
T 2gw1_A 260 IKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338 (514)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH
Confidence 3356777888 888888899988889999999999998888888888888899999999999999999999988888776
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------hhhh-cCCChhHHHHHHHHHhhhcCCCcHH------HH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------GEAF-NGKPTKTARSHGKKFQVTVKQETSR------IL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 152 (287)
..+..+|.++...|++++|+..++++++..|. +..+ ....++.+...++. ++...|+++. ++
T Consensus 339 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-a~~~~~~~~~~~~~~~~~ 415 (514)
T 2gw1_A 339 --FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL-AIELENKLDGIYVGIAPL 415 (514)
T ss_dssp --HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHTSSSCSSCSHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHhhhccchHHHHHHHH
Confidence 67888888888889999999999988888773 2222 23456777777776 5666666544 99
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 153 GNLGWAYMQ---KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 153 ~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|.++.. .|++++|+..|++++..+|+++..+ .+|.++...|++++|...|+++++..
T Consensus 416 ~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999 9999999999999999999998876 89999999999999999999999984
No 49
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.85 E-value=3.8e-20 Score=148.47 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=154.4
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|++...++.+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+.. ...
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~--~~~ 188 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR--YQG 188 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH--HHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH--HHH
Confidence 345888999999999999999999999999999999999999999999999999999999999999999999655 345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
...+..+...++.++|+..++++++..|. ++.+++.+|.++...|++++|+..|
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~--------------------------~~~~~~~la~~l~~~g~~~~A~~~l 242 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPE--------------------------DAALATQLALQLHQVGRNEEALELL 242 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 55566677888999999999987777664 8999999999999999999999999
Q ss_pred HHHHhhCCCc--hHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLIDPDA--NKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+++..+|++ ..++ +++.++..+|+.++|...|++++..
T Consensus 243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 9999999998 5665 8999999999999999999998864
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.85 E-value=5.6e-20 Score=163.98 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=136.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
..|+++.++.+||.++..+|++++|+..|+++++++|++. .++..+|.+|..+|++++|+..|+++++++|.
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEALMHYKEAIRISPT------ 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Confidence 4688899999999999999999999999999999999988 88999999999999999999999998887664
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
++.+++++|.++..+|++++|++.|+++++++|++..++ ++|.++..+|++++|+..|+
T Consensus 76 --------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 76 --------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999999999999999999999999998887 99999999999999999999
Q ss_pred HHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 207 DVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
++++.. +++...+......+..++
T Consensus 136 ~Al~l~---P~~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 136 TALKLK---PDFPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHC---SCCHHHHHHHHHHHHHTT
T ss_pred HHHHhC---CCChHHHhhhhhHHHhcc
Confidence 999984 444444444443443333
No 51
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.8e-20 Score=167.43 Aligned_cols=156 Identities=11% Similarity=-0.068 Sum_probs=144.6
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
..+|++..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++. .++
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~ 504 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--APK 504 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--HHH
T ss_pred cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHH
Confidence 778999999999999999999999999999999999999999999999999999999999999999999999988 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
..+|.++...|++++ +..|+++++++|. ++.+++++|.++...|++++|+..|
T Consensus 505 ~~lg~~~~~~g~~~~-~~~~~~al~~~P~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 505 LALAATAELAGNTDE-HKFYQTVWSTNDG--------------------------VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHHHHTCCCT-TCHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHH-HHHHHHHHHhCCc--------------------------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 9999998887764 8899999999999999999999999
Q ss_pred HHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 173 RKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 173 ~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
+++++++|++..++ ++|.++...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999998876 89999877665
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.4e-19 Score=140.16 Aligned_cols=162 Identities=11% Similarity=0.019 Sum_probs=137.2
Q ss_pred chhhHhhcCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 7 QPYHVVHKLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 7 ~~~~~l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+.+++...| .+..+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++..|+
T Consensus 29 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 108 (228)
T 4i17_A 29 KYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG 108 (228)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 3445788888 888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHH
Q 023081 86 QAQE-----SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYM 160 (287)
Q Consensus 86 ~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~ 160 (287)
++.. .++..+|.++...|++++|+..|++++++.|... ++.++..+|.++.
T Consensus 109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------------------~~~~~~~l~~~~~ 164 (228)
T 4i17_A 109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW------------------------KTDALYSLGVLFY 164 (228)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH------------------------HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc------------------------cHHHHHHHHHHHH
Confidence 6522 4688999999999999999999999988877400 2344555555555
Q ss_pred HcCCH---------------------------HHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 161 QKGNY---------------------------TSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 161 ~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
..|+. ++|+.+|+++++++|+++... .++.+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 55544 999999999999999998775 566554
No 53
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=8.9e-20 Score=157.41 Aligned_cols=211 Identities=12% Similarity=0.029 Sum_probs=182.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.+..+++.+|.++...|++++|+..|++++..+|. ..++..+|.++...|++++|+..+++++...|++. .++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNS--SVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCT--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCH--HHHHHH
Confidence 455778999999999999999999999999999999 99999999999999999999999999999999887 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchh--------hhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHG--------EAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
|.++...|++++|+..|+++++..|.. ..+ ....++.+...++. .+...|+++.++..+|.++...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE-AKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHH-HHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999998842 222 23467888888887 68889999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCchH------HH-HHHHHHHh---ccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 167 SAEVVYRKAQLIDPDANK------AC-NLSHCLIK---QARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~------~~-~l~~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+|+..|++++...|+++. .+ .+|.++.. .|++++|+..++++++.. +.....+......+...+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhc
Confidence 999999999999888753 44 89999999 999999999999999873 344444444444444444
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-19 Score=145.49 Aligned_cols=196 Identities=18% Similarity=0.244 Sum_probs=158.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-- 83 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 83 (287)
..|....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45666788999999999999999999999999984 56667889999999999999999999999999874
Q ss_pred ------hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------ch--------hhhh-cCCChhHHHHHHHHH
Q 023081 84 ------SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI--------YH--------GEAF-NGKPTKTARSHGKKF 140 (287)
Q Consensus 84 ------p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~--------~~~~-~~~~~~~a~~~~~~~ 140 (287)
|... .++..+|.+|...|++++|+..|+++++.. +. +..+ ....++.+...+++
T Consensus 102 ~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~- 178 (311)
T 3nf1_A 102 TLGKDHPAVA--ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR- 178 (311)
T ss_dssp HHCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH-
T ss_pred HhCCCChHHH--HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 3334 678899999999999999999999999874 21 2222 23456777777776
Q ss_pred hhhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------------------------
Q 023081 141 QVTV--------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID--------------------------------- 179 (287)
Q Consensus 141 ~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------- 179 (287)
++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 179 a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (311)
T 3nf1_A 179 ALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258 (311)
T ss_dssp HHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------C
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHH
Confidence 3443 55567788899999999999999999999988742
Q ss_pred ----------------CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 180 ----------------PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 180 ----------------~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|.....+ .+|.++..+|++++|..+|+++++..
T Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 259 SFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2233334 78999999999999999999988763
No 55
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=3.5e-20 Score=134.11 Aligned_cols=144 Identities=12% Similarity=0.114 Sum_probs=121.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
.||.++...|++++|+..+++++...|+++ ..+..+|.+|...|++++|+..|+++++++|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---------------- 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKYICTYINVQER---------------- 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Confidence 478888999999999999999999999887 67889999999999999999999998887664
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHH-HHHHHhcccCC
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSV-LEDVLLGKLSG 215 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~-~~~~l~~~~~~ 215 (287)
++.+|..+|.+|...|++++|+..|+++++++|+++.++ ++|.++..+|++++|... ++++++. +
T Consensus 64 ----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l---~ 130 (150)
T 4ga2_A 64 ----------DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL---F 130 (150)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH---S
T ss_pred ----------CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh---C
Confidence 899999999999999999999999999999999998886 899999999999887765 5899998 4
Q ss_pred CCchhHHHHHHHHHHhc
Q 023081 216 STETKTINRVKELLQEL 232 (287)
Q Consensus 216 ~~~~~~~~~~~~~l~~l 232 (287)
+.++..+.-...++...
T Consensus 131 P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 131 PGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp TTCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55655544444444433
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.8e-17 Score=131.75 Aligned_cols=186 Identities=17% Similarity=0.139 Sum_probs=156.7
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
.|+++.+++.+|.++...|++++|+.+|+++++ |+++.++..+|.++.. .+++++|+.+|+++++.. ++ .
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~--~ 75 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--N 75 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--H
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH--H
Confidence 478889999999999999999999999999998 7778999999999999 999999999999999875 34 5
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhccc------hhhhh-c----CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 91 LDNVLIDLYKK----CGRLDEQIELLKQKLRMIY------HGEAF-N----GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 91 ~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~------~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
.+..+|.+|.. .+++++|+.+|+++++... .+..+ . ....+.+...+++ ++... ++.++..+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTT--CHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHH-HHhcC--cHHHHHHH
Confidence 78889999999 9999999999999998753 23334 3 3467778877776 44443 68889999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|.. .+++++|+.+|+++++.+ ++..+ ++|.++.. .+++++|+.+|+++++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 999998 999999999999999873 44454 89999999 99999999999999987
No 57
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.3e-19 Score=126.95 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=62.2
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
++|+.+.++..+|..++..|++++|+..|+++++.+|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------ 79 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDDCDTCIRLDSK------ 79 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh------
Confidence 4455555555555555555555555555555555555544 45555555555555555555555554444332
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC 191 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~ 191 (287)
++.+|+.+|.++...|++++|+..|+++++++|++..+. .|+.+
T Consensus 80 --------------------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 80 --------------------FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 455555555555555555555555555555555555443 44443
No 58
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.83 E-value=1.4e-19 Score=126.81 Aligned_cols=109 Identities=10% Similarity=-0.035 Sum_probs=102.6
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+...+|+.+.++..+|..++..|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|+++++++|+++ .
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 82 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI--K 82 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh--H
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
++..+|.+|...|++++|+..|+++++++|.
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 8999999999999999999999998888775
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=7.3e-19 Score=139.51 Aligned_cols=193 Identities=15% Similarity=0.036 Sum_probs=155.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
-+.+++...|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++..|++
T Consensus 65 ~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 65 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhh-------hc-CCChhHHHHHHHHHhhhcCC----CcHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEA-------FN-GKPTKTARSHGKKFQVTVKQ----ETSRILGN 154 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------~~-~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 154 (287)
. ...... .+....|++++|+..+++++...|.... +. ......+...++. .+...| .++.++..
T Consensus 145 ~--~~~~~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (275)
T 1xnf_A 145 P--FRSLWL-YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA-DATDNTSLAEHLSETNFY 220 (275)
T ss_dssp H--HHHHHH-HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH-HCCSHHHHHHHHHHHHHH
T ss_pred h--HHHHHH-HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHH-HhcccccccccccHHHHH
Confidence 6 222222 3446679999999999999998773211 11 2234556666555 344433 34789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 205 (287)
+|.++...|++++|+..|++++..+|++.. ..+.++..+|++++|+..+
T Consensus 221 la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 221 LGKYYLSLGDLDSATALFKLAVANNVHNFV--EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCTTCH--HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCchhHH--HHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999997743 3467888899999998877
No 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.82 E-value=4.8e-19 Score=140.78 Aligned_cols=177 Identities=18% Similarity=0.186 Sum_probs=148.2
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--- 83 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 83 (287)
.|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 118 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 118 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3667788999999999999999999999999977 35557889999999999999999999999999883
Q ss_pred -----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 84 -----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 84 -----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
|... .++..+|.+|...|++++|+.+|+++++..... .....|....++..+|.+
T Consensus 119 ~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------------~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 119 LGKFHPDVA--KQLNNLALLCQNQGKAEEVEYYYRRALEIYATR------------------LGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp HCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH------------------SCTTCHHHHHHHHHHHHH
T ss_pred cCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------------cCCCCHHHHHHHHHHHHH
Confidence 5444 688999999999999999999999999873210 001123357789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-------------------------------------------------CCchHHH-HH
Q 023081 159 YMQKGNYTSAEVVYRKAQLID-------------------------------------------------PDANKAC-NL 188 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~-------------------------------------------------~~~~~~~-~l 188 (287)
+...|++++|+.++++++... |.....+ .+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999862 1122333 79
Q ss_pred HHHHHhccCHHHHHHHHHHHHhc
Q 023081 189 SHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 189 ~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++..+|++++|..+|+++++.
T Consensus 259 a~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 259 GALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999975
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=3e-19 Score=141.22 Aligned_cols=173 Identities=13% Similarity=0.017 Sum_probs=147.0
Q ss_pred chhhHhhcCCCC---chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHH--------cCCHHHH
Q 023081 7 QPYHVVHKLPPG---DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQ--------QDRVDEA 72 (287)
Q Consensus 7 ~~~~~l~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~--------~g~~~~A 72 (287)
.+.+++...|++ +.+++.+|.++...|++++|+..|++++...|++ +.+++.+|.++.. .|++++|
T Consensus 37 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A 116 (261)
T 3qky_A 37 YFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKA 116 (261)
T ss_dssp HHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 445688889998 8899999999999999999999999999998754 6789999999999 9999999
Q ss_pred HHHHHHHHHhchhhhHH-HHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHH
Q 023081 73 VEAIKSFRHLCSKQAQE-SLD--------------NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHG 137 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~-~~~--------------~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~ 137 (287)
+..|++++...|++... ... ..+|.+|...|++++|+..|+++++..|.
T Consensus 117 ~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------------- 180 (261)
T 3qky_A 117 IEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---------------- 180 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------------
T ss_pred HHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----------------
Confidence 99999999999976411 122 78899999999999999999999988773
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHH
Q 023081 138 KKFQVTVKQETSRILGNLGWAYMQK----------GNYTSAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEAR 202 (287)
Q Consensus 138 ~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~ 202 (287)
.+..+.+++.+|.+|... |++++|+..|++++...|+++... .++.++..+++++++.
T Consensus 181 -------~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 181 -------TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp -------STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 122467899999999977 999999999999999999986542 6777877777765543
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=3.8e-19 Score=148.40 Aligned_cols=186 Identities=12% Similarity=0.083 Sum_probs=152.2
Q ss_pred chhhHhhcCCCCchHHHH------hHHhHHhhCCHHHHHHHHHHHHhcC---CC---CHHHHHHHHHHHHHcCCHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVR------AKHVQLVEKDPEAAIVLFWKAINAG---DR---VDSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~------lg~~~~~~~~~~~A~~~~~~al~~~---~~---~~~~~~~la~~~~~~g~~~~A~~ 74 (287)
+.++.++..|...+.+.. .|..+...|++++|+..|++++... ++ .+.++..+|.+|...|++++|+.
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 164 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666655554444 9999999999999999999999872 32 46789999999999999999999
Q ss_pred HHHHHHHhchhh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcH
Q 023081 75 AIKSFRHLCSKQ-----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETS 149 (287)
Q Consensus 75 ~~~~~~~~~p~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (287)
+++++++..+.. ....++..+|.+|...|++++|+..|++++++.+. ....+...
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~ 224 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA--------------------EKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH--------------------cCChHHHH
Confidence 999999985522 12357889999999999999999999999998652 11112245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLI-----D-PDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~-~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.++.++|.+|...|++++|+.+|++++.+ + |.....+ ++|.++..+|++++|..+++++++..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999983 4 4444554 89999999999999999999999874
No 63
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.82 E-value=8.6e-19 Score=140.95 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=144.9
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~ 90 (287)
.+...|.++...|++++|+..|++++...+. .+.++.++|.+|...|++++|+.+|++++.+.|... ...
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677888999999999999999999987422 257899999999999999999999999999987531 125
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 91 LDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 91 ~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+..+|.+|... |++++|+.+|++++++.|.. ...+....++.++|.++...|++++|+
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQD--------------------QSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--------------------CChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 788999999996 99999999999999987631 000012567889999999999999999
Q ss_pred HHHHHHHhhCCCchH-------H-HHHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 170 VVYRKAQLIDPDANK-------A-CNLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 170 ~~~~~al~~~~~~~~-------~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
.+|++++...|++.. . .++|.++..+|++++|+..|+++++..+
T Consensus 179 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999887643 2 3799999999999999999999998753
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=1.6e-17 Score=132.02 Aligned_cols=185 Identities=16% Similarity=0.098 Sum_probs=162.0
Q ss_pred CCCchHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhh
Q 023081 16 PPGDSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
|+++.+++.+|.++.. .+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.. ++
T Consensus 35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~ 110 (273)
T 1ouv_A 35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA 110 (273)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence 7889999999999999 999999999999999885 78999999999999 999999999999999874 34
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccch------hhhh-c----CCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 88 QESLDNVLIDLYKK----CGRLDEQIELLKQKLRMIYH------GEAF-N----GKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 88 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~------~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
..+..+|.+|.. .+++++|+.+|+++++..+. +..+ . ....+.+...+++ ++.. +++.++
T Consensus 111 --~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~-a~~~--~~~~a~ 185 (273)
T 1ouv_A 111 --EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDK-ACDL--KDSPGC 185 (273)
T ss_dssp --HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHHT--TCHHHH
T ss_pred --cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHC--CCHHHH
Confidence 678899999999 99999999999999998752 3333 2 3467778887776 4443 568999
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+.+|.+|.. .+++++|+.+|+++++.+| +.. +++|.++.. .+++++|+.+|+++++.
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 999999999 9999999999999999865 444 489999999 99999999999999987
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.81 E-value=2.1e-19 Score=137.25 Aligned_cols=156 Identities=10% Similarity=0.012 Sum_probs=131.5
Q ss_pred chhhHhhcCCCCchHHHH----------------hHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 023081 7 QPYHVVHKLPPGDSPYVR----------------AKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVD 70 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~----------------lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~ 70 (287)
.+.+++..+|+++.+++. +|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 26 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 105 (208)
T 3urz_A 26 YFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105 (208)
T ss_dssp HHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 344688899999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCc
Q 023081 71 EAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR--LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQET 148 (287)
Q Consensus 71 ~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (287)
+|+..|+++++++|+++ .++..+|.+|...|+ ...+...+.+++...| .
T Consensus 106 ~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~ 156 (208)
T 3urz_A 106 DALRMYEKILQLEADNL--AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---------------------------M 156 (208)
T ss_dssp HHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---------------------------H
T ss_pred HHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---------------------------h
Confidence 99999999999999988 789999999887764 3455666666554333 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHC 191 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~ 191 (287)
..+++.+|.++...|++++|+.+|+++++++|+......+..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i 199 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467889999999999999999999999999986544344443
No 66
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=7.1e-18 Score=135.43 Aligned_cols=209 Identities=14% Similarity=0.052 Sum_probs=164.6
Q ss_pred cCCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHH
Q 023081 14 KLPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQES 90 (287)
Q Consensus 14 ~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 90 (287)
..|++ .+..+.+++.++..|+++.|+..++. .+|....++..++..+...|+.++|++.+++++.. +|+++ .
T Consensus 28 ~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~--~ 102 (291)
T 3mkr_A 28 SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT--T 102 (291)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH--H
T ss_pred CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH--H
Confidence 34544 35678899999999999999998865 25556788889999999999999999999999876 58887 7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----hhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHH--HHHHHc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIY-----HGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLG--WAYMQK 162 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg--~~~~~~ 162 (287)
++..+|.++...|++++|+..+++ ..++ .+..+ .....+.|...+++ .+..+|++.......+ .++...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~-~~~~~p~~~~~~l~~a~~~l~~~~ 179 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKK-MQDQDEDATLTQLATAWVSLAAGG 179 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHhhCcCcHHHHHHHHHHHHHhCc
Confidence 899999999999999999999998 1111 12233 34567888888887 6777888765544444 334456
Q ss_pred CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 163 GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 163 g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
|++++|+..|++++...|+++..+ ++|.++..+|++++|...|+++++. ++++...+......+..++
T Consensus 180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---~p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---DSGHPETLINLVVLSQHLG 248 (291)
T ss_dssp THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 899999999999999999998886 8999999999999999999999998 4555555444444444444
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=2e-17 Score=141.46 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=158.0
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA---------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+..|..+|.++...|++++|++.|++++++ +|....++.++|.+|...|++++|+.++++++.+.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34677888999999999999999999999875 567788899999999999999999999999998866321
Q ss_pred ------HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccchhhhh------------cCCChhHHHHHHHHHhhhcCCC
Q 023081 88 ------QESLDNVLIDLYKKC--GRLDEQIELLKQKLRMIYHGEAF------------NGKPTKTARSHGKKFQVTVKQE 147 (287)
Q Consensus 88 ------~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~~a~~~~~~~~~~~~~~ 147 (287)
...++..+|..+... ++|++|+.+|+++++++|..... .......+...+++ ++.++|+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~-al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ-AIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH-HHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH-HhhcCCc
Confidence 124566666666554 57999999999999999853221 11223456666666 7899999
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 148 TSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 148 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
++.++..+|..+.. .|++++|...+++++..+|+....+ ++|.++...|++++|+..++++++..+
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 99999999887665 4678999999999999999998886 899999999999999999999998843
No 68
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.80 E-value=2.1e-18 Score=151.21 Aligned_cols=152 Identities=13% Similarity=0.043 Sum_probs=104.8
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++
T Consensus 11 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 90 (568)
T 2vsy_A 11 QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH 90 (568)
T ss_dssp ----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 33456667777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc---C
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK---G 163 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~---g 163 (287)
. ..+..+|.+|...|++++|++.|+++++..|. ++.++..+|.++... |
T Consensus 91 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 91 P--GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--------------------------EPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCCT
T ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhhccc
Confidence 5 56777777777777777777777776666543 566777777777777 7
Q ss_pred CHHHHHHHHHHHHhhCCCchHHH
Q 023081 164 NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++++|...++++++.+|+....+
T Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp THHHHHHHHHHHHHHTCCCSCHH
T ss_pred cHHHHHHHHHHHHhcCCcccChH
Confidence 77777777777777777765444
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.80 E-value=1.4e-19 Score=130.54 Aligned_cols=113 Identities=10% Similarity=0.010 Sum_probs=58.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+++++..+|+++.+++.+|.++...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 3444444555555555555555555555555555555555555544 44555555555555555555555554444332
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++.+|+++|.+|...|++++|+..|++++++.|+.
T Consensus 103 --------------------------~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 --------------------------DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp --------------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred --------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 44555555555555555555555555555555544
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.80 E-value=3.7e-18 Score=127.04 Aligned_cols=148 Identities=15% Similarity=0.109 Sum_probs=137.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
.+++...|++..+++.+|.++...|++++|+..+++++...|....++..+|.++...|++++|+.++++++...|++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 110 (186)
T 3as5_A 32 EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF- 110 (186)
T ss_dssp TTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-
T ss_pred HHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-
Confidence 3466778999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
.++..+|.++...|++++|+..++++++..|. ++.++..+|.++...|++++|
T Consensus 111 -~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 111 -NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--------------------------EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHH
T ss_pred -HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHcCCHHHH
Confidence 78899999999999999999999998877653 788999999999999999999
Q ss_pred HHHHHHHHhhCCCchH
Q 023081 169 EVVYRKAQLIDPDANK 184 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~ 184 (287)
..++++++...|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999999887754
No 71
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=2.5e-18 Score=144.51 Aligned_cols=199 Identities=16% Similarity=0.198 Sum_probs=111.3
Q ss_pred hHhhcCCCCc----hHHHHhHHhHHhhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 10 HVVHKLPPGD----SPYVRAKHVQLVEKDPEAAIVLFWKAINA------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 10 ~~l~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+++...|++. .+++.+|.++...|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+++++
T Consensus 73 ~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 73 AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455555554 35566666666666666666666666654 2344555666666666666666666666666
Q ss_pred HHhch------hhhHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhccc--------------hh
Q 023081 80 RHLCS------KQAQESLDNVLIDLYKKCGR-----------------LDEQIELLKQKLRMIY--------------HG 122 (287)
Q Consensus 80 ~~~~p------~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~al~~~~--------------~~ 122 (287)
+...+ ... .++..+|.+|...|+ +++|+.++++++++.+ .+
T Consensus 153 l~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 230 (411)
T 4a1s_A 153 LTLARQLGDRLSEG--RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHHTCHHHHH--HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhhchHHHH--HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65522 222 455566666666666 6666666666655432 11
Q ss_pred hhh-cCCChhHHHHHHHHHhhhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hHHH-HH
Q 023081 123 EAF-NGKPTKTARSHGKKFQVTVKQET------SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA------NKAC-NL 188 (287)
Q Consensus 123 ~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~-~l 188 (287)
..+ ....++.+..++++ ++...+.. ..++..+|.++...|++++|+.+|++++...+.. ...+ .+
T Consensus 231 ~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQE-RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHTTCHHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 12334455555544 23322221 2356666666666666666666666666654432 1222 56
Q ss_pred HHHHHhccCHHHHHHHHHHHHhc
Q 023081 189 SHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 189 ~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
|.++..+|++++|+.++++++..
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666666655
No 72
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.79 E-value=2.2e-18 Score=137.78 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=158.2
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|+++..++.+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++. .++..+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH--HHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHH
Confidence 667889999999999999999999999999999999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh------HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK------TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
|.+|...|++++|+..|++++++.|......+.... ....... ......|.++.+...++.++ .|++++|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 999999999999999999999999854222111111 1111111 13445667777777777765 79999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhc-cCHHHHHHHHHHHHhc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQ-ARYTEARSVLEDVLLG 211 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~-g~~~~A~~~~~~~l~~ 211 (287)
+.++++++.+|++.... .++.++... +.+++|...|.++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999887664 677777665 7789999999988864
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=3e-17 Score=126.08 Aligned_cols=176 Identities=13% Similarity=-0.080 Sum_probs=156.0
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hch
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-DRVDEAVEAIKSFRH--LCS 84 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~--~~p 84 (287)
+.+++...|++..+++.+|.++...|++++|+..|++++...|....++..+|.++... |++++|+..+++++. ..|
T Consensus 31 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 31 IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 44578889999999999999999999999999999999999999999999999999999 999999999999999 555
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hh-cCCChhHHHHHHHHHhhhcCC-CcHHHHHH
Q 023081 85 KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AF-NGKPTKTARSHGKKFQVTVKQ-ETSRILGN 154 (287)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~-~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 154 (287)
... .++..+|.++...|++++|+..++++++..|... .+ ....++.+...++. .+...| .++.++..
T Consensus 111 ~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~ 187 (225)
T 2vq2_A 111 TPY--IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK-YQSRVEVLQADDLLL 187 (225)
T ss_dssp CHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH-HHHHHCSCCHHHHHH
T ss_pred chH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCCHHHHHH
Confidence 555 6888999999999999999999999999988421 22 23456778888877 678888 89999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.++...|++++|..+++.+....|+++...
T Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 188 GWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999987664
No 74
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.6e-18 Score=144.94 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=163.3
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHh---hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLV---EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFR 80 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~ 80 (287)
+.++++.+|+++.++..+|.++.. .++.++|+..|+++++.+|+++.++..+|..+... |++++|+.++++++
T Consensus 161 ~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al 240 (472)
T 4g1t_A 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240 (472)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345788899999999888887554 46778899999999999999988888888776554 57789999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh--------hhcC--------------------CChhH
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE--------AFNG--------------------KPTKT 132 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~--------------------~~~~~ 132 (287)
..+|+.. .++..+|.+|...|++++|+..|+++++..|... .+.. ...+.
T Consensus 241 ~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (472)
T 4g1t_A 241 EKAPGVT--DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGH 318 (472)
T ss_dssp HHCSSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHH
T ss_pred HhCccHH--HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Confidence 9999887 7888999999999999999999999999988421 1100 01234
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH----HHHHHH-HHhccCHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----CNLSHC-LIKQARYTEARSVLED 207 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~-~~~~g~~~~A~~~~~~ 207 (287)
+...+++ ++..+|.++.++..+|.++...|++++|+.+|++++...|++... ..+|.+ +...|++++|+..|++
T Consensus 319 A~~~~~~-a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 319 AVAHLKK-ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHHHH-HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHH-HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555555 678899999999999999999999999999999999998887433 256654 4678999999999999
Q ss_pred HHhcccC
Q 023081 208 VLLGKLS 214 (287)
Q Consensus 208 ~l~~~~~ 214 (287)
+++..+.
T Consensus 398 al~i~~~ 404 (472)
T 4g1t_A 398 GVKINQK 404 (472)
T ss_dssp HHHSCCC
T ss_pred HHhcCcc
Confidence 9998543
No 75
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=1.1e-18 Score=125.86 Aligned_cols=112 Identities=7% Similarity=-0.154 Sum_probs=107.5
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
+-+++..+|++..+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|++++|+..|+++++++|+++
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 44578889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+++.+|.+|...|++++|+..|++++++.|+
T Consensus 105 --~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 105 --TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999885
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=6.2e-18 Score=135.94 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=138.6
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhchhhh----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQ-DRVDEAVEAIKSFRHLCSKQA---- 87 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~p~~~---- 87 (287)
+.++..+|.++...|++++|+.+|++++.+.+.. ..++.++|.+|... |++++|+.+|++++++.|...
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 5788999999999999999999999999887543 46889999999996 999999999999999988541
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
...++..+|.++...|++++|+..|++++++.|... ........++.++|.++...|++++
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-------------------LSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-------------------TTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-------------------cccHHHHHHHHHHHHHHHHcCCHHH
Confidence 125688899999999999999999999999876310 0000123478899999999999999
Q ss_pred HHHHHHHHHhhCCCchHH-----H-HHHHHHH--hccCHHHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDPDANKA-----C-NLSHCLI--KQARYTEARSVLEDVLLG 211 (287)
Q Consensus 168 A~~~~~~al~~~~~~~~~-----~-~l~~~~~--~~g~~~~A~~~~~~~l~~ 211 (287)
|+.+|++++.++|+.... + .++.++. ..+++++|+..|++++..
T Consensus 218 A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 218 AARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 999999999999987543 1 4666664 567899999999888765
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=1.1e-17 Score=139.45 Aligned_cols=172 Identities=15% Similarity=0.075 Sum_probs=145.4
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-----hHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGD------RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQE 89 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~ 89 (287)
.++..|..+...|++++|+..|++++...+ ..+.++..+|.+|...|++++|+.+++++++..+.. ...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 467789999999999999999999997642 236789999999999999999999999999886531 223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+..+|.+|...|++++|+..|++++++.+. ....+....++.++|.+|...|++++|+
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~lg~~y~~~~~~~~A~ 242 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMD--------------------IQNDRFIAISLLNIANSYDRSGDDQMAV 242 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 57889999999999999999999999987541 1111124678999999999999999999
Q ss_pred HHHHHHHh-----hCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQL-----IDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~-----~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|++++. .+|.....+ ++|.++..+|++++|..+++++++..
T Consensus 243 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999 566664454 89999999999999999999999875
No 78
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.78 E-value=2.5e-17 Score=137.79 Aligned_cols=194 Identities=17% Similarity=0.170 Sum_probs=124.1
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQE 89 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~ 89 (287)
....++.+|..+...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.++++++...+. ....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 44556777777777777777777777777777766 346677777777777777777777777666321 1112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------------hhh-cCCC--------------------hhHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------------EAF-NGKP--------------------TKTAR 134 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~-~~~~--------------------~~~a~ 134 (287)
.++..+|.+|...|++++|+..+++++++.+.. ..+ .... +..+.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 566777777777777777777777777765421 111 0111 34444
Q ss_pred HHHHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHH
Q 023081 135 SHGKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 135 ~~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A 201 (287)
..++. ++.. .|....++..+|.++...|++++|+.++++++...+.... .+ ++|.++..+|++++|
T Consensus 168 ~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 168 DFYEE-NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHH-HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 44443 2221 2234556777777777777777777777777765443321 22 677777777777777
Q ss_pred HHHHHHHHhcc
Q 023081 202 RSVLEDVLLGK 212 (287)
Q Consensus 202 ~~~~~~~l~~~ 212 (287)
+.+++++++..
T Consensus 247 ~~~~~~al~~~ 257 (406)
T 3sf4_A 247 SEYYKKTLLLA 257 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.78 E-value=4.1e-17 Score=114.76 Aligned_cols=134 Identities=27% Similarity=0.318 Sum_probs=109.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.+++.+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++...|.+. ..+..++.++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch--HHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888888766 5677788888
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..+++++...|. ++.++..+|.++...|++++|...+++++..+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPR--------------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887766543 56777888888888888888888888888877
Q ss_pred CC
Q 023081 180 PD 181 (287)
Q Consensus 180 ~~ 181 (287)
|+
T Consensus 134 ~~ 135 (136)
T 2fo7_A 134 PR 135 (136)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 80
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.77 E-value=1.7e-17 Score=145.48 Aligned_cols=154 Identities=14% Similarity=0.031 Sum_probs=128.6
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIEL 111 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 111 (287)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++. .++..+|.+|...|++++|+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP--EAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH--HHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999987 7899999999999999999999
Q ss_pred HHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHH
Q 023081 112 LKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSH 190 (287)
Q Consensus 112 ~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~ 190 (287)
|+++++..|. ++.++..+|.++...|++++|+..|+++++.+|++...+ ++|.
T Consensus 80 ~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 133 (568)
T 2vsy_A 80 LQQASDAAPE--------------------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568)
T ss_dssp HHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhcCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998775 788999999999999999999999999999999998776 8999
Q ss_pred HHHhc---cCHHHHHHHHHHHHhccc
Q 023081 191 CLIKQ---ARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 191 ~~~~~---g~~~~A~~~~~~~l~~~~ 213 (287)
++..+ |++++|...++++++..+
T Consensus 134 ~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 134 WRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHhhccccHHHHHHHHHHHHhcCC
Confidence 99999 999999999999998853
No 81
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.77 E-value=1.1e-17 Score=139.87 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=159.3
Q ss_pred hhHhhcCCCCc----hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 9 YHVVHKLPPGD----SPYVRAKHVQLVEKDPEAAIVLFWKAINAG------DRVDSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 9 ~~~l~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
-+++...|+++ .+++.+|.++...|++++|+.+|++++... |..+.++..+|.++...|++++|+.++++
T Consensus 33 ~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 112 (406)
T 3sf4_A 33 EAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112 (406)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35677788874 678899999999999999999999998763 34467899999999999999999999999
Q ss_pred HHHhchhhh----HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhccch-------------
Q 023081 79 FRHLCSKQA----QESLDNVLIDLYKKCGR--------------------LDEQIELLKQKLRMIYH------------- 121 (287)
Q Consensus 79 ~~~~~p~~~----~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~------------- 121 (287)
++...|... ...++..+|.+|...|+ +++|+..+++++.+.+.
T Consensus 113 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 192 (406)
T 3sf4_A 113 HLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGN 192 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 999877531 23578889999999999 99999999999886331
Q ss_pred -hhhh-cCCChhHHHHHHHHHhhhcCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------hHHH-
Q 023081 122 -GEAF-NGKPTKTARSHGKKFQVTVKQE------TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA------NKAC- 186 (287)
Q Consensus 122 -~~~~-~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~- 186 (287)
+..+ ....++.+...+++ ++...+. ...++..+|.++...|++++|+.++++++...+.. ...+
T Consensus 193 la~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 271 (406)
T 3sf4_A 193 LGNTHYLLGNFRDAVIAHEQ-RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 271 (406)
T ss_dssp HHHHHHHHTBHHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHH-HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence 1222 23346667666666 3333322 24488999999999999999999999998865543 2233
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|.++...|++++|+.+++++++..
T Consensus 272 ~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 272 SLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 79999999999999999999998764
No 82
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=9e-18 Score=121.02 Aligned_cols=76 Identities=13% Similarity=-0.012 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 41 LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 41 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
.|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++.+
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444444444455555555555555555555444444444 34444444444444444444444444433
No 83
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.77 E-value=1.6e-17 Score=139.59 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=156.6
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------chhhh
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD----SALKDMAVVLKQQDRVDEAVEAIKSFRHL------CSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~ 87 (287)
....++.+|..+...|++++|+..|++++...|++. .++..+|.++...|++++|+.++++++.. .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 345677899999999999999999999999999885 57899999999999999999999999988 34444
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch--------------hhhh-cCCC-----------------hhHHHH
Q 023081 88 QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH--------------GEAF-NGKP-----------------TKTARS 135 (287)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------------~~~~-~~~~-----------------~~~a~~ 135 (287)
.++..+|.+|...|++++|+..|+++++..+. +..+ .... ++.+..
T Consensus 127 --~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 127 --KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 68899999999999999999999999998431 1122 1112 455555
Q ss_pred HHHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHH
Q 023081 136 HGKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEAR 202 (287)
Q Consensus 136 ~~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~ 202 (287)
++++ ++.. .+....++..+|.++...|++++|+.++++++...+.... .+ ++|.++..+|++++|+
T Consensus 205 ~~~~-al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 205 FYQE-NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 5554 2222 2335678999999999999999999999999997765432 33 8999999999999999
Q ss_pred HHHHHHHhcc
Q 023081 203 SVLEDVLLGK 212 (287)
Q Consensus 203 ~~~~~~l~~~ 212 (287)
.+++++++..
T Consensus 284 ~~~~~al~~~ 293 (411)
T 4a1s_A 284 EHYKRTLALA 293 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
No 84
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.77 E-value=4e-19 Score=145.61 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=138.6
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------------HHHHHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------------QESLDNVLID 97 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~~~~l~~ 97 (287)
..+++++|+..|++++...|..+.++..+|.++...|++++|+..|++++...|++. ...++..+|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 456778888889888888898899999999999999999999999999999999761 0268999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|+++++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSN--------------------------NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998888664 789999999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHH-HHHHHHHHhc
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEA-RSVLEDVLLG 211 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A-~~~~~~~l~~ 211 (287)
++|++..++ .++.++..+|++++| ...|++++..
T Consensus 259 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998876 899999999999998 5577777754
No 85
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.77 E-value=2.6e-18 Score=123.82 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|++++..+|++. ..+..+|.++...|++++|+..|++++..+|. ++.+|+.
T Consensus 9 ~~~~al~~~p~~~--~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~~ 60 (148)
T 2vgx_A 9 TIAMLNEISSDTL--EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------------------------DSRFFLG 60 (148)
T ss_dssp SHHHHTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHH
T ss_pred hHHHHHcCCHhhH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------------------------cHHHHHH
Confidence 4455555555554 45555555555555555555555555555443 4555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELE 233 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 233 (287)
+|.++...|++++|+..|++++.++|+++..+ ++|.++..+|++++|+..|+++++..+.++.......++...+..+.
T Consensus 61 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555443 55555555555555555555555554333333333444444444444
No 86
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.5e-16 Score=128.86 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hchhhhHHHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQ-------QDRV-------DEAVEAIKSFRH-LCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~ 100 (287)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ..|++. .++..+|.++.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 789999999999999999999999999874 5885 999999999999 699887 78999999999
Q ss_pred HcCCHHHHHHHHHHHHhccchhh--hhc--------CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH-cCCHHHHH
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGE--AFN--------GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ-KGNYTSAE 169 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~--~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~ 169 (287)
..|++++|...|++++++.|... ++. ....+.+...+++ ++...|.+..+|...+.+... .|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH-HHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999988533 332 1245677777777 788889888888877766543 79999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|+++++..|+++..| .++.++..+|++++|+..|++++..
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999998887 8999999999999999999999986
No 87
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=2e-17 Score=134.43 Aligned_cols=85 Identities=14% Similarity=0.124 Sum_probs=41.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINA------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QE 89 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 89 (287)
..+..+|.++...|++++|+..+++++.. .|..+.++..+|.++...|++++|+.++++++...|... ..
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 34445555555555555555555555443 122234455555555555555555555555555443211 11
Q ss_pred HHHHHHHHHHHHcCC
Q 023081 90 SLDNVLIDLYKKCGR 104 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~ 104 (287)
.++..+|.++...|+
T Consensus 124 ~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 124 RALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc
Confidence 244455555555555
No 88
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=9.6e-17 Score=130.42 Aligned_cols=192 Identities=17% Similarity=0.174 Sum_probs=153.4
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----hhHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----QAQESL 91 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~ 91 (287)
..++..|..+...|++++|+..|++++...|.+ ..++..+|.++...|++++|+.++++++...+. .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 457788999999999999999999999999988 467889999999999999999999999887431 112267
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchh--------------hhh-cCCC--------------------hhHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHG--------------EAF-NGKP--------------------TKTARSH 136 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~-~~~~--------------------~~~a~~~ 136 (287)
+..+|.++...|++++|+..++++++..+.. ..+ .... ++.+...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 8899999999999999999999999976521 111 0112 4555555
Q ss_pred HHHHhhhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HH-HHHHHHHhccCHHHHHH
Q 023081 137 GKKFQVTV------KQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK------AC-NLSHCLIKQARYTEARS 203 (287)
Q Consensus 137 ~~~~~~~~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~-~l~~~~~~~g~~~~A~~ 203 (287)
++. ++.. .+....++..+|.++...|++++|+.++++++...+.... .+ ++|.++...|++++|..
T Consensus 166 ~~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEE-NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 554 2221 2334678999999999999999999999999987554321 33 89999999999999999
Q ss_pred HHHHHHhcc
Q 023081 204 VLEDVLLGK 212 (287)
Q Consensus 204 ~~~~~l~~~ 212 (287)
+++++++..
T Consensus 245 ~~~~al~~~ 253 (338)
T 3ro2_A 245 YYKKTLLLA 253 (338)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.75 E-value=4.1e-16 Score=119.30 Aligned_cols=164 Identities=14% Similarity=0.025 Sum_probs=142.4
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhchhhhHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD----RVDEAVEAIKSFRHLCSKQAQESL 91 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~~~~~~p~~~~~~~ 91 (287)
..++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.+. .++ ..
T Consensus 15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~--~a 87 (212)
T 3rjv_A 15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK--SG 87 (212)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH--HH
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH--HH
Confidence 368999999999999999999999999999875 578999999999998 7 899999999999664 444 67
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cC
Q 023081 92 DNVLIDLYKK----CGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KG 163 (287)
Q Consensus 92 ~~~l~~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g 163 (287)
...+|.+|.. .+++++|+.+|+++++..+.. +++.+++++|.+|.. .+
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~------------------------~~~~a~~~Lg~~y~~g~g~~~ 143 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESD------------------------AAVDAQMLLGLIYASGVHGPE 143 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH------------------------HHHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc------------------------chHHHHHHHHHHHHcCCCCCC
Confidence 8889999987 899999999999998876510 137899999999999 89
Q ss_pred CHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhc-c-----CHHHHHHHHHHHHhc
Q 023081 164 NYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQ-A-----RYTEARSVLEDVLLG 211 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~-g-----~~~~A~~~~~~~l~~ 211 (287)
++++|+.+|++++.. +.++.. ++||.+|... | ++++|+.+|+++.+.
T Consensus 144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 999999999999998 555445 5999999764 3 899999999999987
No 90
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=4.9e-17 Score=135.60 Aligned_cols=192 Identities=7% Similarity=-0.002 Sum_probs=128.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ---- 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---- 86 (287)
.+.+++.+|.++...|++++|+.++++++...+. ...++..+|.+|...|++++|+.++++++...|..
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 4578999999999999999999999999987433 35689999999999999999999999999886632
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc------h--------hhhh-cCCChhHHHHHHHHHhhhc-----CC
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY------H--------GEAF-NGKPTKTARSHGKKFQVTV-----KQ 146 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------~--------~~~~-~~~~~~~a~~~~~~~~~~~-----~~ 146 (287)
....++..+|.+|...|++++|+.+|++++++.+ . +..+ ....++.|..++++ ++.. +|
T Consensus 222 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-al~~~~~~~~~ 300 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK-GMAYSQKAGDV 300 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHcCCH
Confidence 1235788999999999999999999999999532 1 1111 12234444444443 2222 12
Q ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.....+..+|.++...|+ +.+|+..+++. ...|.....+ .+|.++..+|++++|..+|+++++.
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222223445555555555 44444444443 1111111222 5677777777777777777766654
No 91
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=3.7e-16 Score=135.91 Aligned_cols=202 Identities=6% Similarity=-0.055 Sum_probs=149.0
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHh-------hCCHH-------HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHH
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLV-------EKDPE-------AAIVLFWKAIN-AGDRVDSALKDMAVVLKQQDRVDEA 72 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A 72 (287)
+.+++...|+++..|+..|..+.. .|+++ +|+..|++++. ..|+...+|..+|.++...|++++|
T Consensus 261 y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 261 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 335888899999999999999886 69987 99999999997 7999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh------h---h-cCCChhHHHHHHHHHhh
Q 023081 73 VEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE------A---F-NGKPTKTARSHGKKFQV 142 (287)
Q Consensus 73 ~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------~---~-~~~~~~~a~~~~~~~~~ 142 (287)
...|+++++..|.++. .++..++.++...|++++|...|+++++..|... + + .....+.+...++. ++
T Consensus 341 ~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~-al 418 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL-GL 418 (530)
T ss_dssp HHHHHHHHHSSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHH-HH
T ss_pred HHHHHHHhCccccCch-HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Confidence 9999999999887631 4788889999999999999999999998766310 0 0 12234455555554 45
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH----HH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 143 TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANK----AC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...|+++.+|..+|.++...|++++|...|++++...|.++. .| ..+......|+.+.+..++.++++.
T Consensus 419 ~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666665444332 33 3444555556666666666666655
No 92
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.74 E-value=1.9e-17 Score=118.43 Aligned_cols=114 Identities=13% Similarity=0.036 Sum_probs=55.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 42 FWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 42 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|++++..+|++..+++.+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|++++.++|.
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA--RYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3444444444444455555555555555555555555555555444 44444455555555555555555544444332
Q ss_pred hhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 122 GEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++.+++.+|.++...|++++|+..|++++.++|+++
T Consensus 85 --------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 85 --------------------------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp --------------------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred --------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 444455555555555555555555555555544443
No 93
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.74 E-value=1e-16 Score=122.44 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=126.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..++.+|..+...|++++|+..|++++ .| .+.++..+|.++...|++++|+..|++++..+|+++ .++..+|.+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA--VAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch--HHHHHHHHHH
Confidence 457899999999999999999999985 33 678999999999999999999999999999999887 7899999999
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|++++|+..|+++++..|...... .....+...|..+.+++++|.++...|++++|+..|++++...
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLID----------YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEE----------CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHH----------HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999877311000 0000122456677899999999999999999999999999999
Q ss_pred CCc
Q 023081 180 PDA 182 (287)
Q Consensus 180 ~~~ 182 (287)
|++
T Consensus 152 p~~ 154 (213)
T 1hh8_A 152 SEP 154 (213)
T ss_dssp CSG
T ss_pred ccc
Confidence 986
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.3e-16 Score=111.54 Aligned_cols=124 Identities=10% Similarity=-0.078 Sum_probs=109.7
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|..+..++.+|..+...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|+++ ..+..+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV--RAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999999999999987 789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ 161 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 161 (287)
|.++...|++++|+..|++++++.| .....|++..++..++.+...
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDA--------------------EVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH--------------------HHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCc--------------------ccCCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999985 223335566667666665543
No 95
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.73 E-value=1.6e-16 Score=127.76 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=141.9
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh---
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ--- 86 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--- 86 (287)
|+....+...+..+...|++++|+..+.+++...+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44445667788889999999999999999999877653 346678999999999999999999999865422
Q ss_pred -hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCC
Q 023081 87 -AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGN 164 (287)
Q Consensus 87 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~ 164 (287)
....++..+|.+|...|++++|+.+|++++++... ...++. .+.+++++|.+|...|+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--------------------~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--------------------LHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------cCccccchHHHHHhHHHHHHHHhh
Confidence 12357889999999999999999999999966321 000000 23689999999999999
Q ss_pred HHHHHHHHHHHHhhCCCc------hHHH-HHHHHHHhccCHHHH-HHHHHHHHhcc
Q 023081 165 YTSAEVVYRKAQLIDPDA------NKAC-NLSHCLIKQARYTEA-RSVLEDVLLGK 212 (287)
Q Consensus 165 ~~~A~~~~~~al~~~~~~------~~~~-~l~~~~~~~g~~~~A-~~~~~~~l~~~ 212 (287)
+++|+.++++++.+.++. ...+ ++|.++..+|++++| ..++++++...
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 999999999999875431 2333 899999999999999 88899998764
No 96
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.73 E-value=5.7e-17 Score=115.95 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=113.2
Q ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 74 EAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
..|++++..+|++. ..+..+|..+...|++++|+..|++++..+|. ++.+|+
T Consensus 5 ~~l~~al~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~~~~ 56 (142)
T 2xcb_A 5 GTLAMLRGLSEDTL--EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--------------------------DARYFL 56 (142)
T ss_dssp ----CCTTCCHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHH
T ss_pred hhHHHHHcCCHHHH--HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--------------------------cHHHHH
Confidence 46778888899887 78889999999999999999999998877664 899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 154 NLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
.+|.++...|++++|+..|++++.++|+++..+ ++|.++..+|++++|+..|+++++..+.++.......++...+..+
T Consensus 57 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876 9999999999999999999999998765555555556666666655
Q ss_pred cc
Q 023081 233 EP 234 (287)
Q Consensus 233 ~~ 234 (287)
..
T Consensus 137 ~~ 138 (142)
T 2xcb_A 137 TA 138 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.73 E-value=1.3e-16 Score=123.17 Aligned_cols=155 Identities=13% Similarity=0.034 Sum_probs=130.9
Q ss_pred cchhhHhhcCCCCc---hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHH--------------
Q 023081 6 DQPYHVVHKLPPGD---SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQ-------------- 65 (287)
Q Consensus 6 ~~~~~~l~~~p~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~-------------- 65 (287)
..+.+++...|+++ .+++.+|.++...|++++|+..|+++++..|++. .+++.+|.++..
T Consensus 25 ~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 104 (225)
T 2yhc_A 25 TQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDR 104 (225)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccch
Confidence 34456788888775 6899999999999999999999999999999875 478999999876
Q ss_pred ----cCCHHHHHHHHHHHHHhchhhhHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc
Q 023081 66 ----QDRVDEAVEAIKSFRHLCSKQAQES---------------LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN 126 (287)
Q Consensus 66 ----~g~~~~A~~~~~~~~~~~p~~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 126 (287)
.|++++|+..|+++++..|++.... ....+|.+|...|++++|+..|+++++..|..
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---- 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT---- 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS----
T ss_pred hhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC----
Confidence 5789999999999999999764211 12567889999999999999999999988741
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
|..+.++..+|.++...|++++|+..++.+....|++.
T Consensus 181 -------------------~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 181 -------------------QATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------------------CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 11247899999999999999999999999998888764
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=4.6e-17 Score=133.37 Aligned_cols=140 Identities=9% Similarity=-0.034 Sum_probs=128.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~ 74 (287)
..+...|+.+.+++.+|.++...|++++|+..|++++...|.. ..++.++|.++...|++++|+.
T Consensus 138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566678889999999999999999999999999999999998 6899999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|+++++++|+++ .++..+|.+|...|++++|+..|+++++++|. +..++..
T Consensus 218 ~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~a~~~ 269 (336)
T 1p5q_A 218 SCNKALELDSNNE--KGLSRRGEAHLAVNDFELARADFQKVLQLYPN--------------------------NKAAKTQ 269 (336)
T ss_dssp HHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHHH
T ss_pred HHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------CHHHHHH
Confidence 9999999999988 78999999999999999999999998888664 7889999
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSA-EVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A-~~~~~~al~ 177 (287)
+|.++...|++++| ...|++++.
T Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 270 LAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 456777664
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.73 E-value=9.7e-16 Score=122.79 Aligned_cols=199 Identities=7% Similarity=-0.008 Sum_probs=169.9
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEK--DPEAAIVLFWKAINAGDRVDSALKDMAVVL----KQQ---DRVDEAVEAIKSFR 80 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~~ 80 (287)
++|..+|++..+|...|.+....+ ++++++.++..++..+|.+..+|...+.++ ... +++++++..+.+++
T Consensus 58 ~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l 137 (306)
T 3dra_A 58 LGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAML 137 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHH
Confidence 588999999999999999999988 999999999999999999999999999999 777 78999999999999
Q ss_pred HhchhhhHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhccchhh-hhc---------CC-----ChhHHHHHHHHHhhh
Q 023081 81 HLCSKQAQESLDNVLIDLYKKCGRLD--EQIELLKQKLRMIYHGE-AFN---------GK-----PTKTARSHGKKFQVT 143 (287)
Q Consensus 81 ~~~p~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~al~~~~~~~-~~~---------~~-----~~~~a~~~~~~~~~~ 143 (287)
+.+|++. .+|...+.+....|.++ ++++.++++++.+|... +++ +. .+....+++.. ++.
T Consensus 138 ~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~-aI~ 214 (306)
T 3dra_A 138 SSDPKNH--HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD-KIV 214 (306)
T ss_dssp HHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH-HHH
T ss_pred HhCCCCH--HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH-HHH
Confidence 9999988 78888888999999998 99999999999988422 221 11 14556666666 789
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhC---CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTS-AEVVYRKAQLID---PDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
.+|++..+|+.++.++...|+..+ ...++.+++..+ |.++.++ .++.++.+.|+.++|+++|+.+.+.
T Consensus 215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 999999999999999999998655 556777777765 6666665 8999999999999999999999863
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.73 E-value=9.2e-17 Score=127.52 Aligned_cols=161 Identities=25% Similarity=0.355 Sum_probs=133.3
Q ss_pred HhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--------hhhhHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--------SKQAQESLDN 93 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~~ 93 (287)
...|++++|+.+|++++.. .|..+.++..+|.++...|++++|+.++++++... |... .++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA--ATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH--HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH--HHHH
Confidence 3467777888888877763 25567889999999999999999999999999874 4444 6889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
.+|.+|...|++++|+..|++++..... .. ..+|....++..+|.++...|++++|+.++
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREK-------------------VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHH-------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHH-------------------HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999987431 00 112446788999999999999999999999
Q ss_pred HHHHhh--------CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 173 RKAQLI--------DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 173 ~~al~~--------~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++++.. .|.....+ ++|.++..+|++++|+.+++++++.
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999997 44444444 8999999999999999999999986
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.73 E-value=1.7e-16 Score=128.37 Aligned_cols=171 Identities=15% Similarity=0.202 Sum_probs=140.5
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~ 90 (287)
.+...|.++...|++++|+..|.+++...+.. ..++.++|.+|...|++++|+.+|++++.+.+.. ....
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46667889999999999999999999876432 5678899999999999999999999999886521 1235
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
.+..+|.+|.. |++++|+.+|++++++.+.. ...+....++.++|.+|...|++++|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--------------------ERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--------------------CChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999998 99999999999999986620 0001135778999999999999999999
Q ss_pred HHHHHHhhCCCch------HHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 171 VYRKAQLIDPDAN------KAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 171 ~~~~al~~~~~~~------~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
+|++++.+.|+.. ..+ ++|.++..+|++++|+..|++++ ..+
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 9999999765432 122 78999999999999999999999 643
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.72 E-value=8.4e-16 Score=107.95 Aligned_cols=131 Identities=30% Similarity=0.343 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.++..+|.++...|++++|+..+++++...|++. ..+..++.++...|++++|+..+++++...|.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR------------ 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch--hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC------------
Confidence 5788999999999999999999999999999876 67888999999999999999999998877653
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++.++..+|.++...|++++|+..+++++...|.+...+ .+|.++...|++++|...+++++...
T Consensus 68 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 68 --------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp --------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred --------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 678899999999999999999999999999999987775 89999999999999999999998763
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.71 E-value=4.3e-16 Score=125.17 Aligned_cols=170 Identities=13% Similarity=0.106 Sum_probs=137.4
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS------ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQESLD 92 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~ 92 (287)
...+..+...|++++|+..+++++...+..+. .+..+|.++...|++++|+.++++++...+.. ....++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34567788999999999999999987776544 34468999999999999999999999865422 112468
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
..+|.+|...|++++|+.+|+++++.... . ...+....+++++|.+|...|++++|+.+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEA--------------------LHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------------------cccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999976431 1 11122467899999999999999999999
Q ss_pred HHHHHhhCCCc------hHHH-HHHHHHHhccC-HHHHHHHHHHHHhcc
Q 023081 172 YRKAQLIDPDA------NKAC-NLSHCLIKQAR-YTEARSVLEDVLLGK 212 (287)
Q Consensus 172 ~~~al~~~~~~------~~~~-~l~~~~~~~g~-~~~A~~~~~~~l~~~ 212 (287)
+++++.+.+.. ...+ ++|.++..+|+ +++|+.+|++++...
T Consensus 219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999875432 3344 89999999995 699999999999764
No 104
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=2.6e-16 Score=116.74 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=114.3
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH-HHHcCCH
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL-YKKCGRL 105 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~-~~~~g~~ 105 (287)
..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++ .++..+|.+ +...|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQH 95 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCc
Confidence 3345678999999999999999999999999999999999999999999999999999887 788889999 8899998
Q ss_pred --HHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 106 --DEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 106 --~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++|+..|+++++..|. ++.++..+|.++...|++++|+..|++++..+|++.
T Consensus 96 ~~~~A~~~~~~al~~~p~--------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSN--------------------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred chHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 9999999998877664 788999999999999999999999999999999875
Q ss_pred HHH
Q 023081 184 KAC 186 (287)
Q Consensus 184 ~~~ 186 (287)
...
T Consensus 150 ~~~ 152 (177)
T 2e2e_A 150 NRT 152 (177)
T ss_dssp CHH
T ss_pred cHH
Confidence 443
No 105
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.70 E-value=9.7e-16 Score=112.02 Aligned_cols=133 Identities=10% Similarity=-0.015 Sum_probs=117.3
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+..++.+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++ ..+..+|.
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~ 89 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999887 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL--GNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
++...|++++|+..|+++++..|. +..++ ..++..+...|++++|+..+.++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~--------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPH--------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999998888764 55555 44455588889999999998877
Q ss_pred Hhh
Q 023081 176 QLI 178 (287)
Q Consensus 176 l~~ 178 (287)
...
T Consensus 144 ~~~ 146 (166)
T 1a17_A 144 RSV 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 106
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.70 E-value=1.2e-15 Score=126.93 Aligned_cols=141 Identities=11% Similarity=0.079 Sum_probs=110.9
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh----h
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK----Q 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~ 86 (287)
.+.+++.+|.++...|+++.|+.++++++...+. .+.++..+|.+|...|++++|+.++++++...+. .
T Consensus 140 ~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4578899999999999999999999999976432 2567889999999999999999999999987542 1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
....++..+|.+|...|++++|+.+|++++++... ..+|..+.++..+|.++...|+++
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE---------------------KVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------------HCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh---------------------hCChhHHHHHHHHHHHHHHCCCHH
Confidence 23357889999999999999999999999985321 122334566666777777777777
Q ss_pred HHHHHHHHHHhhC
Q 023081 167 SAEVVYRKAQLID 179 (287)
Q Consensus 167 ~A~~~~~~al~~~ 179 (287)
+|+.++++++.+.
T Consensus 279 ~A~~~~~~al~~~ 291 (378)
T 3q15_A 279 KAFQFIEEGLDHI 291 (378)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766653
No 107
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=7.7e-16 Score=107.59 Aligned_cols=116 Identities=13% Similarity=-0.048 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
..+..+..+|..+...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..|+++++++|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------- 70 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--------- 70 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------
Confidence 3457788999999999999999999999999999887 78889999999999999999999998877664
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCchHHH-HHHHHHHh
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID------PDANKAC-NLSHCLIK 194 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~-~l~~~~~~ 194 (287)
++.+++.+|.++...|++++|+..|++++.++ |++...+ .++.+...
T Consensus 71 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 71 -----------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred -----------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999998 7776665 56665543
No 108
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-16 Score=108.18 Aligned_cols=123 Identities=9% Similarity=-0.014 Sum_probs=113.7
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|.+..+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++...|++. .++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~ 88 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI--KGYT 88 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch--HHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999887 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGN 164 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 164 (287)
.+|.++...|++++|+..|+++++..|. +..++..++.++...|+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS--------------------------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG--------------------------GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC--------------------------chHHHHHHHHHHHHhcC
Confidence 9999999999999999999999888764 67888889999887764
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=7.6e-16 Score=107.85 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=95.8
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-----HHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-----QESL 91 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~ 91 (287)
+.+.++..+|..++..|++++|+.+|+++++++|+++.++.++|.+|...|++++|+..++++++++|++. ...+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999998652 2346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+..+|.++...|++++|++.|++++...|+
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 888999999999999999999999988773
No 110
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.69 E-value=2.5e-15 Score=109.78 Aligned_cols=131 Identities=13% Similarity=0.023 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+..+..+|.++...|++++|+..|++++...|.+. .++..+|.++...|++++|+..++++++..|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 46789999999999999999999999999999887 78999999999999999999999998887664
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH---HHHHHHHhccCHHHHHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC---NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
++.+++.+|.++...|++++|+.+|++++..+|++...+ .++..+...|++++|+..+.++.
T Consensus 80 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 80 ---------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 788999999999999999999999999999999997765 45555888999999999998876
Q ss_pred hc
Q 023081 210 LG 211 (287)
Q Consensus 210 ~~ 211 (287)
..
T Consensus 145 ~~ 146 (166)
T 1a17_A 145 SV 146 (166)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.69 E-value=7.2e-16 Score=107.99 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+.++.++|.+++..|++++|+.+|+++++++|+++ .++..+|.+|...|++++|+..|++++++.|...
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-------- 76 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-------- 76 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--------
Confidence 356788999999999999999999999999999988 7899999999999999999999999999987410
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
...+....++.++|.++...|++++|+.+|++++...|+..
T Consensus 77 -----------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 77 -----------ADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred -----------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 00111256789999999999999999999999999888653
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=2.6e-15 Score=113.57 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=126.8
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc------hhhhHHHHHHHHHHHHHHcC
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC------SKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~~~l~~~~~~~g 103 (287)
+..|++++|.+.++......+....++..+|.++...|++++|+.++++++... |... .++..+|.++...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH--RALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH--HHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHcC
Confidence 567999999996655544333567899999999999999999999999999853 3333 67889999999999
Q ss_pred CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 023081 104 RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ-ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD- 181 (287)
Q Consensus 104 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~- 181 (287)
++++|+..+++++.+... ...++ ....++.++|.++...|++++|+.++++++...+.
T Consensus 81 ~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 81 NWDAARRCFLEERELLAS--------------------LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------------SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHH--------------------cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999987331 11011 13667899999999999999999999999975322
Q ss_pred -chH----H-HHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 182 -ANK----A-CNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 182 -~~~----~-~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+.. . .++|.++..+|++++|...++++++..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 221 1 289999999999999999999999875
No 113
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.68 E-value=6.6e-16 Score=108.00 Aligned_cols=124 Identities=13% Similarity=0.025 Sum_probs=114.9
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..|++...++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|++. ..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 84 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS--KAYG 84 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH--HHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999887 7889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY 165 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 165 (287)
.+|.++...|++++|+..|+++++..|. ++.++..+|.++...|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPD--------------------------NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCcc--------------------------chHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998887664 788899999999988875
No 114
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.68 E-value=7.6e-17 Score=121.99 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=118.0
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh--------------HH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA--------------QE 89 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--------------~~ 89 (287)
..+......|++++|.+.+.......+..+..+..+|..+...|++++|+..|++++...|.++ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455567777777777655555555677888899999999999999999999998877543 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.++..+|.+|...|++++|+..++++++..|. ++.+++.+|.++...|++++|+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN--------------------------NVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--------------------------cHHHHHHHHHHHHHcccHHHHH
Confidence 57888999999999999999999998877664 7889999999999999999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHH-HHHHHHHh
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEAR-SVLEDVLL 210 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~l~ 210 (287)
.+|++++.++|++..++ .++.++..+++..++. ..+...+.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998876 8999999988888777 44444443
No 115
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.68 E-value=9.5e-16 Score=112.31 Aligned_cols=106 Identities=12% Similarity=0.030 Sum_probs=100.2
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
..+.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.+|...|++++|+..|++++.++|++. .++.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~ 83 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS--KAWS 83 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999987 7899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.+|.+|...|++++|+..|++++++.|.
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999988774
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.67 E-value=2.2e-16 Score=117.19 Aligned_cols=143 Identities=16% Similarity=0.066 Sum_probs=123.4
Q ss_pred hhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhh
Q 023081 8 PYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLK-QQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 8 ~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+-+++..+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+.. ..+...+|+..++++++.+|++
T Consensus 29 ~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~ 107 (176)
T 2r5s_A 29 IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDN 107 (176)
T ss_dssp HHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC
Confidence 3457788999999999999999999999999999999999999 7776666665433 3334456899999999999998
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
+ .++..+|.++...|++++|+..|+++++..|. +.++.++..+|.++...|+.+
T Consensus 108 ~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------------------------~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 108 F--ELACELAVQYNQVGRDEEALELLWNILKVNLG------------------------AQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------------------------TTTTHHHHHHHHHHHHHCSSC
T ss_pred H--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc------------------------cChHHHHHHHHHHHHHhCCCC
Confidence 8 78999999999999999999999999988773 114678999999999999999
Q ss_pred HHHHHHHHHHh
Q 023081 167 SAEVVYRKAQL 177 (287)
Q Consensus 167 ~A~~~~~~al~ 177 (287)
+|+..|++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999999875
No 117
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.67 E-value=3.3e-14 Score=114.58 Aligned_cols=175 Identities=7% Similarity=-0.023 Sum_probs=149.1
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR--VDEAVEAIK 77 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~ 77 (287)
.++..+|++..+|...+.+....+. +++++.++..++..+|.+..+|...+.++...|. +++++.++.
T Consensus 55 ~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 134 (331)
T 3dss_A 55 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 134 (331)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHH
Confidence 4888999999999999999877665 6899999999999999999999999999999994 999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCGR-LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++.+|.+. .+|...+.+....|. ++++++++.++++.+|. +..+|+.++
T Consensus 135 k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--------------------------N~SAW~~R~ 186 (331)
T 3dss_A 135 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------------------------NYSSWHYRS 186 (331)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC--------------------------CHHHHHHHH
T ss_pred HHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC--------------------------CHHHHHHHH
Confidence 9999999887 788888888888898 68999999988777664 788888888
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhc-----------cCHHHHHHHHHHHHh
Q 023081 157 WAYMQK--------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQ-----------ARYTEARSVLEDVLL 210 (287)
Q Consensus 157 ~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~-----------g~~~~A~~~~~~~l~ 210 (287)
.++... +.++++++++.+++..+|++..+| .+..++... +..+++++.+.++++
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 888776 457888999999999999988887 344444433 457888888888888
Q ss_pred cc
Q 023081 211 GK 212 (287)
Q Consensus 211 ~~ 212 (287)
..
T Consensus 267 ~~ 268 (331)
T 3dss_A 267 LE 268 (331)
T ss_dssp HC
T ss_pred hC
Confidence 74
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.66 E-value=6.4e-15 Score=117.96 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=135.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
.|.....+..+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..+++++...|.
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~------- 183 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAETLIALNRSEDAEAVLXTIPLQDQD------- 183 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-------
Confidence 488889999999999999999999999999999999988 88999999999999999999999998777663
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
....+...+..+...++.++|+..|++++..+|++...+ ++|.++...|++++|+..|++
T Consensus 184 -------------------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 184 -------------------TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp -------------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455566777778899999999999999999999998886 999999999999999999999
Q ss_pred HHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 208 VLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
+++..+ +..+..........+..++..
T Consensus 245 ~l~~~p-~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 245 HLRXDL-TAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHCT-TGGGGHHHHHHHHHHHHHCTT
T ss_pred HHhccc-ccccchHHHHHHHHHHHcCCC
Confidence 999842 222245555666666666643
No 119
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.66 E-value=1.9e-15 Score=110.62 Aligned_cols=109 Identities=13% Similarity=0.126 Sum_probs=89.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
+..+..+..+|.++...|++++|+..|++++..+|++. .++..+|.+|...|++++|+..|+++++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------- 77 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAAEDAELATVVDPK-------- 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Confidence 34567788888888888888888888888888888877 67888888888888888888888887777654
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.+|+.+|.++...|++++|+.+|++++.++|++...+
T Consensus 78 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 78 ------------------YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred ------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 678888888888888888888888888888888886654
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-15 Score=105.46 Aligned_cols=120 Identities=17% Similarity=0.122 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
|..+.++..+|.++...|++++|+..|++++...|++. .++..+|.++...|++++|+..++++++..|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------
Confidence 55688999999999999999999999999999999887 78999999999999999999999998877664
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccC
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQAR 197 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~ 197 (287)
++.+++.+|.++...|++++|+.+|++++..+|.+...+ .++.++..+|+
T Consensus 83 ------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 83 ------------------FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------------------chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999999987776 89999887764
No 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.66 E-value=2.6e-15 Score=104.96 Aligned_cols=122 Identities=19% Similarity=0.143 Sum_probs=110.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
+|..+.++..+|.++...|++++|+..+++++...|++. .++..+|.++...|++++|+..+++++...|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 78 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-------
Confidence 345578899999999999999999999999999999877 78899999999999999999999998877654
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++.++..+|.++...|++++|+.+|++++..+|++...+ .++.++..+|++
T Consensus 79 -------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 79 -------------------YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred -------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999999999999998776 899999988875
No 122
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.66 E-value=1.4e-16 Score=135.89 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=130.1
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------------HHHHHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------------QESLDNVLID 97 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~~~~l~~ 97 (287)
..+++++|+..|+.++...|..+.++..+|.++...|++++|+..|++++...|.+. ...++..+|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888889999999999999999999999999999988761 1268899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|+++++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA--------------------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc--------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999998888764 789999999999999999999999999999
Q ss_pred hCCCchHHH-HHHHHHHhccCHHHHHH-HHHHHHh
Q 023081 178 IDPDANKAC-NLSHCLIKQARYTEARS-VLEDVLL 210 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~~~~g~~~~A~~-~~~~~l~ 210 (287)
++|++..++ .++.++..++++++|.. .+.+++.
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998776 89999999999988764 4454443
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=1.4e-14 Score=110.43 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..++.+|.++...|++++|+..|++++ .| ++ .++..+|.+|...|++++|+..|++++..+|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------ 69 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKH------------ 69 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------
Confidence 457889999999999999999999986 33 34 68899999999999999999999998887664
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch----------------HHH-HHHHHHHhcc
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN----------------KAC-NLSHCLIKQA 196 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------------~~~-~l~~~~~~~g 196 (287)
++.+++.+|.++...|++++|+..|++++...|++. ..+ ++|.++..+|
T Consensus 70 --------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 135 (213)
T 1hh8_A 70 --------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135 (213)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred --------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHcc
Confidence 788999999999999999999999999999888765 555 8999999999
Q ss_pred CHHHHHHHHHHHHhcc
Q 023081 197 RYTEARSVLEDVLLGK 212 (287)
Q Consensus 197 ~~~~A~~~~~~~l~~~ 212 (287)
++++|+..|+++++..
T Consensus 136 ~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 136 EWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999985
No 124
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.65 E-value=2.8e-15 Score=113.38 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=127.0
Q ss_pred HhhcCC-CCchHHHHhHHhHHhhCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 11 VVHKLP-PGDSPYVRAKHVQLVEKDPEAAIVLFWKAIN------AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 11 ~l~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
.+..+| ....++..+|.++...|++++|+..|++++. ..+....++..+|.++...|++++|+.++++++...
T Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 96 (203)
T 3gw4_A 17 ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96 (203)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445555 5678899999999999999999999999998 334457789999999999999999999999999882
Q ss_pred ---hhh--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 84 ---SKQ--AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 84 ---p~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+++ .....+..+|.++...|++++|+..+++++...+. .........++..+|.+
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ--------------------ADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--------------------ccchHHHHHHHHHHHHH
Confidence 211 22357889999999999999999999999987431 00001124567899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCL 192 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~ 192 (287)
+...|++++|..++++++.+.......+..+.+.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 190 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELEDSEAVNELM 190 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999998755443333333333
No 125
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.65 E-value=1.4e-15 Score=114.95 Aligned_cols=136 Identities=10% Similarity=0.017 Sum_probs=115.8
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD----------------SALKDMAVVLKQQDRVDEAVEAI 76 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~ 76 (287)
...+.....+..+|..+...|++++|+..|++++...|..+ .++.++|.++...|++++|+.++
T Consensus 32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 111 (198)
T 2fbn_A 32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33445567889999999999999999999999999998886 89999999999999999999999
Q ss_pred HHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 77 KSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 77 ~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++..+|++. .++..+|.+|...|++++|+..|++++++.|. ++.++..++
T Consensus 112 ~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~ 163 (198)
T 2fbn_A 112 SKVLKIDKNNV--KALYKLGVANMYFGFLEEAKENLYKAASLNPN--------------------------NLDIRNSYE 163 (198)
T ss_dssp HHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--------------------------CHHHHHHHH
T ss_pred HHHHHhCcccH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--------------------------cHHHHHHHH
Confidence 99999999887 78999999999999999999999998887664 788899999
Q ss_pred HHHHHcCCHHHHH-HHHHHHH
Q 023081 157 WAYMQKGNYTSAE-VVYRKAQ 176 (287)
Q Consensus 157 ~~~~~~g~~~~A~-~~~~~al 176 (287)
.++...++..++. ..|+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 164 LCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 9999988888877 4444444
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.65 E-value=1.4e-14 Score=100.21 Aligned_cols=121 Identities=23% Similarity=0.224 Sum_probs=108.2
Q ss_pred CCCC-chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHH
Q 023081 15 LPPG-DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDN 93 (287)
Q Consensus 15 ~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 93 (287)
+|.. ...++.+|.++...|++++|+..|++++...|....++..+|.++...|++++|+..+++++...|++. ..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHH
Confidence 4555 678999999999999999999999999999999999999999999999999999999999999999877 7888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 94 VLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
.++.++...|++++|+..|+++++..|. ++.++..+|.++...|
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPN--------------------------NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------------------------cHHHHHHHHHHHHhcc
Confidence 9999999999999999999998877664 7788888888887654
No 127
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.5e-15 Score=120.12 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=118.4
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA--------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC--- 83 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 83 (287)
.|....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 4555677788888888888888888888888765 24446677788888888888888888888887764
Q ss_pred -----hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------cch--------hhhh-cCCChhHHHHHHHHHh
Q 023081 84 -----SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM--------IYH--------GEAF-NGKPTKTARSHGKKFQ 141 (287)
Q Consensus 84 -----p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~--------~~~~-~~~~~~~a~~~~~~~~ 141 (287)
|... .++..+|.++...|++++|+.+|+++++. .|. +..+ ....++.|...++..
T Consensus 145 ~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a- 221 (311)
T 3nf1_A 145 LGKDHPDVA--KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI- 221 (311)
T ss_dssp HCTTCHHHH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-
T ss_pred cCCCChHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 3333 56777888888888888888888888776 331 1112 122345555555442
Q ss_pred hh-------------------------------------------------cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 142 VT-------------------------------------------------VKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 142 ~~-------------------------------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
+. ..|..+.++..+|.+|...|++++|+.+|
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 301 (311)
T 3nf1_A 222 LTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301 (311)
T ss_dssp HHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 21 34667889999999999999999999999
Q ss_pred HHHHhhCCC
Q 023081 173 RKAQLIDPD 181 (287)
Q Consensus 173 ~~al~~~~~ 181 (287)
++++++.|+
T Consensus 302 ~~al~l~~~ 310 (311)
T 3nf1_A 302 EAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999998764
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=5.4e-15 Score=109.56 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=110.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh
Q 023081 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV 142 (287)
Q Consensus 63 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~ 142 (287)
+...|++++|+..+++++..+|+++ .++..+|.+|...|++++|+..|+++++..|.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------------------- 76 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--------------------- 76 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---------------------
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------
Confidence 3467899999999999999999887 78999999999999999999999998887664
Q ss_pred hcCCCcHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCC
Q 023081 143 TVKQETSRILGNLGWA-YMQKGNY--TSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSG 215 (287)
Q Consensus 143 ~~~~~~~~~~~~lg~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 215 (287)
++.++..+|.+ +...|++ ++|+..|++++..+|++...+ .+|.++..+|++++|+..|+++++..+.+
T Consensus 77 -----~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 77 -----NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp -----CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred -----CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 78899999999 8899999 999999999999999998776 89999999999999999999999986443
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.64 E-value=4e-16 Score=122.46 Aligned_cols=180 Identities=13% Similarity=0.003 Sum_probs=151.2
Q ss_pred ccchhhHhhcCCCCchHHHHh-------HHhHHhhCCHHHHHHHHHHHHhcCCCCHH---------------------HH
Q 023081 5 RDQPYHVVHKLPPGDSPYVRA-------KHVQLVEKDPEAAIVLFWKAINAGDRVDS---------------------AL 56 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------------~~ 56 (287)
++-+-+++..+|+..++|..+ +.+....+.+.+++..+++.+.+.|.... +.
T Consensus 26 ~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~ 105 (282)
T 4f3v_A 26 LDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAIT 105 (282)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHH
T ss_pred HHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHH
Confidence 334556899999999999999 89999999999999999999997776433 44
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSH 136 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~ 136 (287)
..+|.++...|++++|.+.|..++...|++. ..+.++.++.+.++|++|+..|+.+....+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~--------------- 167 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK--------------- 167 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH---------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc---------------
Confidence 4588999999999999999999998888765 6788899999999999999999866554210
Q ss_pred HHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-chHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 137 GKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLID--PD-ANKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
. ...+++.+|.++...|++++|+.+|++++... |. .... +++|.++..+|+.++|...|++++..
T Consensus 168 ----------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 ----------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0 14578999999999999999999999998644 44 3444 49999999999999999999999997
Q ss_pred c
Q 023081 212 K 212 (287)
Q Consensus 212 ~ 212 (287)
.
T Consensus 238 ~ 238 (282)
T 4f3v_A 238 H 238 (282)
T ss_dssp S
T ss_pred C
Confidence 4
No 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.64 E-value=2.5e-15 Score=107.28 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-------hh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK-------QA---QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGE 123 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 123 (287)
..+..+|..+...|++++|+..|+++++++|+ +. ...+|..+|.++...|++++|+..|++++++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~-- 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR-- 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc--
Confidence 34555666666666666666666666666665 21 1148899999999999999999999999887322
Q ss_pred hhcCCChhHHHHHHHHHhhhcCCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 124 AFNGKPTKTARSHGKKFQVTVKQETSRIL----GNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
.++++|+++.+| +++|.++..+|++++|+..|+++++++|++....
T Consensus 90 -----------------~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 90 -----------------RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp -----------------HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred -----------------cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 556677789999 9999999999999999999999999999886543
No 131
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=5.7e-14 Score=116.50 Aligned_cols=174 Identities=12% Similarity=0.028 Sum_probs=144.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD-----SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QE 89 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~ 89 (287)
......+|.++...|++++|+..+++++...|... .++..+|.++...|++++|...+++++...|... ..
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 35667889999999999999999999999876552 2678899999999999999999999999877432 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc--CCCcHHHHHHHHHHHHHcCCHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV--KQETSRILGNLGWAYMQKGNYTS 167 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~ 167 (287)
.....+|.++...|++++|+..++++++..+. ... .|....++.++|.++...|++++
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINE--------------------QHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--------------------hccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 34678999999999999999999999987541 111 13346678889999999999999
Q ss_pred HHHHHHHHHhhCCCc-----hHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 168 AEVVYRKAQLIDPDA-----NKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 168 A~~~~~~al~~~~~~-----~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|..++++++...+.. ...+ .+|.++...|++++|...+++++...
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 204 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL 204 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999987753 1223 79999999999999999999998763
No 132
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=7.6e-15 Score=103.85 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=100.4
Q ss_pred hcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHH
Q 023081 13 HKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLD 92 (287)
Q Consensus 13 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 92 (287)
...|.++..++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++ .++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV--KAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH--HHH
Confidence 346788999999999999999999999999999999999999999999999999999999999999999999987 789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
..+|.++...|++++|+..|++++++.|.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999999999874
No 133
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.63 E-value=4.3e-15 Score=103.05 Aligned_cols=101 Identities=12% Similarity=0.060 Sum_probs=93.3
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDL 98 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~ 98 (287)
...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++++|++. .++..+|.+
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--~~~~~la~~ 94 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI--AVHAALAVS 94 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999999999999988 789999999
Q ss_pred HHHcCCHHHHHHHHHHHHhccch
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
|...|++++|+..|+++++.+|.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC
Confidence 99999999999999999998874
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.63 E-value=3.2e-14 Score=98.44 Aligned_cols=120 Identities=29% Similarity=0.319 Sum_probs=105.4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 49 GDRV-DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 49 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
+|.. ..++..+|.++...|++++|+..+++++...|++. ..+..++.++...|++++|+..+++++...|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------ 75 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------ 75 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------
Confidence 4444 67899999999999999999999999999999877 68889999999999999999999998877653
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA 196 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g 196 (287)
++.++..+|.++...|++++|+.++++++..+|+++..+ .++.++...|
T Consensus 76 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 76 --------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 688899999999999999999999999999999998775 8888877654
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.63 E-value=1.9e-13 Score=109.55 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=117.1
Q ss_pred HHhhCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH----HH
Q 023081 29 QLVEKDP-EAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY----KK 101 (287)
Q Consensus 29 ~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~----~~ 101 (287)
....|.+ ++|+..+.++|..+|++..+|+..+.++...| ++++++..+..++..+|++. .+|+..+.++ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y--~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY--QIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC--HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH--HHHHHHHHHHHHHHHh
Confidence 3445555 68999999999999999999999999999999 99999999999999999987 6777777777 66
Q ss_pred c---CCHHHHHHHHHHHHhccchhh-hhc--------CCChh--HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCC---
Q 023081 102 C---GRLDEQIELLKQKLRMIYHGE-AFN--------GKPTK--TARSHGKKFQVTVKQETSRILGNLGWAYMQKGN--- 164 (287)
Q Consensus 102 ~---g~~~~A~~~~~~al~~~~~~~-~~~--------~~~~~--~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 164 (287)
. +++++++..+.++++.+|... ++. -.... .....+.+ .+..+|.+..+|...+.+....|.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~-~i~~d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDK-VIDTDLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHhccccch
Confidence 6 789999999999998887411 110 01122 34444444 455555555555555555555554
Q ss_pred ---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 165 ---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 165 ---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++++++++++++..+|++..+| .++.++...|+.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCC
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCC
Confidence 5555555555555555555555 455555555553
No 136
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.63 E-value=9e-15 Score=103.45 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=94.4
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcC
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNG 127 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 127 (287)
.+|..+..+..+|.++...|++++|+..|++++..+|+++ .++..+|.++...|++++|+..+++++++.|.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 75 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQ------ 75 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------
Confidence 4567788999999999999999999999999999999887 78899999999999999999999998877664
Q ss_pred CChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 023081 128 KPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD 181 (287)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 181 (287)
++.+++.+|.++...|++++|+..|++++..+|+
T Consensus 76 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 --------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 7889999999999999999999999999998877
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=6.2e-15 Score=105.27 Aligned_cols=101 Identities=18% Similarity=0.118 Sum_probs=94.5
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR-------VDS-----ALKDMAVVLKQQDRVDEAVEAIKSFRHL---- 82 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 82 (287)
...+...|..++..|++++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..+++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 466789999999999999999999999999998 443 9999999999999999999999999999
Q ss_pred ---chhhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 83 ---CSKQAQESLD----NVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 83 ---~p~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|++. ..| +..|.++...|++++|+..|++++++.|.
T Consensus 91 ~e~~pd~~--~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELNQDEG--KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTTSTHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchH--HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99887 677 99999999999999999999999999885
No 138
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.62 E-value=1.5e-13 Score=109.24 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=140.0
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh-
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGD--RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK- 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 85 (287)
-+++...+.+...++.+|.++...|++++|++.+.+.+..+| ...+++..++.++...|+.+.|.+.++++.+.+|+
T Consensus 90 ~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 90 ENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 345555555667778899999999999999999999988886 77888889999999999999999999999888883
Q ss_pred ----hhHHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 86 ----QAQESLDNVL--IDLYKKCG--RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 86 ----~~~~~~~~~l--~~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+. +...+ +.+....| ++.+|...|+++.+..|.. .++..+++
T Consensus 170 ~~~~d~---~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~------------------------~~~~lLln--- 219 (310)
T 3mv2_B 170 VSGDNE---MILNLAESYIKFATNKETATSNFYYYEELSQTFPTW------------------------KTQLGLLN--- 219 (310)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH------------------------HHHHHHHH---
T ss_pred cccchH---HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc------------------------ccHHHHHH---
Confidence 32 22333 33344445 8999999999877765510 01333444
Q ss_pred HHHHcCCHHHHHHHHHHHHhh----------CCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHH
Q 023081 158 AYMQKGNYTSAEVVYRKAQLI----------DPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVK 226 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 226 (287)
++..+|++++|...++.+++. +|+++... +++.+...+|+ +|.++++++.+.. ++......+....
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp~i~d~~~k~ 296 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHAFIKHHQEID 296 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 899999999999999988876 47888887 89888888998 8999999999873 2223334444444
Q ss_pred HHHHh
Q 023081 227 ELLQE 231 (287)
Q Consensus 227 ~~l~~ 231 (287)
..+.+
T Consensus 297 ~~Fd~ 301 (310)
T 3mv2_B 297 AKFDE 301 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=2.3e-15 Score=128.33 Aligned_cols=134 Identities=8% Similarity=-0.073 Sum_probs=120.5
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---------------DSALKDMAVVLKQQDRVDEAVE 74 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~ 74 (287)
..+...|+....+..+|..++..|++++|+..|++++..+|.+ ..++.++|.+|...|++++|+.
T Consensus 259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3456667788899999999999999999999999999999988 6899999999999999999999
Q ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 75 AIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.|++++.++|++. .+++.+|.+|...|++++|+..|+++++++|. +..++..
T Consensus 339 ~~~~al~~~p~~~--~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--------------------------~~~a~~~ 390 (457)
T 1kt0_A 339 CCDKALGLDSANE--KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--------------------------NKAARLQ 390 (457)
T ss_dssp HHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------------------------CHHHH
T ss_pred HHHHHHhcCCccH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------CHHHHHH
Confidence 9999999999987 78999999999999999999999998888764 6788999
Q ss_pred HHHHHHHcCCHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~ 171 (287)
++.++...+++++|...
T Consensus 391 l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999888754
No 140
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=5.5e-14 Score=122.19 Aligned_cols=175 Identities=13% Similarity=0.054 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hchhhhHHHHHHHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQ-------QDRVD-------EAVEAIKSFRH-LCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~p~~~~~~~~~~l~~~~~ 100 (287)
..++..|++++...|.++.+|..+|..+.. .|+++ +|+..|+++++ ..|++. .++..++.++.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHH
Confidence 478899999999999999999999999986 79987 99999999997 789877 78999999999
Q ss_pred HcCCHHHHHHHHHHHHhccchh--hhhcC--------CChhHHHHHHHHHhhhcCCCcHHHHHHHHHH-HHHcCCHHHHH
Q 023081 101 KCGRLDEQIELLKQKLRMIYHG--EAFNG--------KPTKTARSHGKKFQVTVKQETSRILGNLGWA-YMQKGNYTSAE 169 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~--~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~ 169 (287)
..|++++|...|+++++..|.. .++.. ...+.+...+++ ++...|.+...+...+.+ +...|++++|.
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK-AREDARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCTTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH-HHhccCCchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999999998854 23421 135567777776 677778777777776666 44699999999
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhccc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKL 213 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~ 213 (287)
..|+++++..|+++..| .++.++...|+.++|..+|++++...+
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999998887 899999999999999999999998743
No 141
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.62 E-value=1.5e-14 Score=105.65 Aligned_cols=115 Identities=18% Similarity=0.088 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHL------------------CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
+..+..+|..++..|++++|+..|.+++.. +|... .++..+|.+|...|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNI--PLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHH--HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH--HHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 355666777777777777777777777766 45444 5778888888888888888888888
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-HHH-HHHHHH
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN-KAC-NLSHCL 192 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~l~~~~ 192 (287)
+++++|. ++.+++.+|.++...|++++|+..|++++.++|+++ .+. .++.+.
T Consensus 89 al~~~p~--------------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 89 VLKREET--------------------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHSTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHhcCCc--------------------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 7776554 778888888888888888888888888888888876 433 555555
Q ss_pred Hhc
Q 023081 193 IKQ 195 (287)
Q Consensus 193 ~~~ 195 (287)
...
T Consensus 143 ~~~ 145 (162)
T 3rkv_A 143 ERR 145 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=8e-15 Score=127.76 Aligned_cols=163 Identities=8% Similarity=-0.008 Sum_probs=148.7
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHH
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKD----------PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD--RVDEAVEAIK 77 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~ 77 (287)
+++..+|++..+|+..+.+....|+ +++++..+.+++..+|++..+|...+.++...| +++++++.+.
T Consensus 54 ~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~ 133 (567)
T 1dce_A 54 QILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCA 133 (567)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred HHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 5889999999999999999999888 999999999999999999999999999999999 7799999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHH
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLG 156 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg 156 (287)
++++.+|.+. .+|...+.+....| .++++++++.++++.+| .+..+|+.+|
T Consensus 134 k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p--------------------------~n~saW~~r~ 185 (567)
T 1dce_A 134 RFLEADERNF--HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--------------------------SNYSSWHYRS 185 (567)
T ss_dssp HHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--------------------------CCHHHHHHHH
T ss_pred HHHhhccccc--cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC--------------------------CCccHHHHHH
Confidence 9999999987 78888899999999 89999999988776655 4899999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHH
Q 023081 157 WAYMQK--------------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTE 200 (287)
Q Consensus 157 ~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~ 200 (287)
.++... +.++++++++.+++..+|++..+| .++.++...+++++
T Consensus 186 ~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 186 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 998885 568999999999999999999998 78888888887555
No 143
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.61 E-value=2.6e-16 Score=134.80 Aligned_cols=137 Identities=10% Similarity=0.005 Sum_probs=120.2
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+.+++.+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..++++++.+|+++ .++..+|.
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg~ 82 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI--KGYYRRAA 82 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999999999999999999887 78999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH--
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWA--YMQKGNYTSAEVVYR-- 173 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~-- 173 (287)
+|...|++++|+..|++++++.|. +..++..++.+ +...|++++|+..++
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPH--------------------------DKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT--------------------------CTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999998888664 66778888888 889999999999999
Q ss_pred ---------HHHhhCCCc
Q 023081 174 ---------KAQLIDPDA 182 (287)
Q Consensus 174 ---------~al~~~~~~ 182 (287)
+++...|+.
T Consensus 137 ~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 137 RSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp CSTTTCCTTSSCCCCTTC
T ss_pred chhHhhhhhhhccccccc
Confidence 777777664
No 144
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=1.2e-12 Score=112.65 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=138.8
Q ss_pred CCCCchHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhh
Q 023081 15 LPPGDSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~ 86 (287)
.+.++.+++.+|..+.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. +
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~ 110 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L 110 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C
Confidence 45678888899988888 88999999999988875 567888899999988 888999999999887754 3
Q ss_pred hHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccc------hhhhh-c----CCChhHHHHHHHHHhhhcCCCcHHH
Q 023081 87 AQESLDNVLIDLYKK----CGRLDEQIELLKQKLRMIY------HGEAF-N----GKPTKTARSHGKKFQVTVKQETSRI 151 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~~------~~~~~-~----~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (287)
+ .....+|.+|.. .+++++|+.+|+++.+... .+..+ . ......+...+++ +.. .+++.+
T Consensus 111 ~--~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~-a~~--~~~~~a 185 (490)
T 2xm6_A 111 P--QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSK-AAE--QGNVWS 185 (490)
T ss_dssp H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH-HHH--TTCHHH
T ss_pred H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHH--CCCHHH
Confidence 3 466778888888 7888888888888887643 23333 2 2345666666665 333 256788
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 152 LGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 152 ~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
++.+|.+|.. .+++++|+.+|+++... .++..+ .+|.++.. .+++++|+.+|+++++.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 8888888887 78888888888888764 334443 77777775 67788888888877764
No 145
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.8e-13 Score=116.49 Aligned_cols=185 Identities=16% Similarity=0.110 Sum_probs=153.1
Q ss_pred CCCchHHHHhHHhHHhhC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhchhhhH
Q 023081 16 PPGDSPYVRAKHVQLVEK---DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ----DRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+.++.+++.+|.++...| ++++|+.+|+++...+|.....++.+|.+|... +++++|+.+|+++. |+++
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~- 248 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYP- 248 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST-
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH-
Confidence 345669999999999999 999999999999999999988889999999765 79999999999988 7776
Q ss_pred HHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhccc------hhhhh-cC----CChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 89 ESLDNVLIDL-Y--KKCGRLDEQIELLKQKLRMIY------HGEAF-NG----KPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 89 ~~~~~~l~~~-~--~~~g~~~~A~~~~~~al~~~~------~~~~~-~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
.....+|.+ + ...+++++|+.+|+++.+... .+..+ .| .....+...+++ +. ++++.++++
T Consensus 249 -~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~-Aa---~g~~~A~~~ 323 (452)
T 3e4b_A 249 -ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEK-AV---GREVAADYY 323 (452)
T ss_dssp -HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHT-TT---TTCHHHHHH
T ss_pred -HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH-Hh---CCCHHHHHH
Confidence 788889988 4 468999999999999998653 23444 23 256777777775 33 889999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+|.+|.. ..++++|..+|+++.+. .++.+ ++||.+|.. ..++.+|..+|+++.+.
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9999987 44999999999999874 45555 489999874 46899999999999976
No 146
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=4.2e-13 Score=115.50 Aligned_cols=182 Identities=18% Similarity=0.127 Sum_probs=97.1
Q ss_pred chHHHHhHHhHHh----hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 19 DSPYVRAKHVQLV----EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQ----QDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
+.+++.+|.++.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+... + .
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~--~ 292 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--S--D 292 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--H--H
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--H--H
Confidence 3344444444443 34444444444444432 233444455555544 4555555555555544321 1 3
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHhccch------hhhh-cCC---ChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 91 LDNVLIDLYKKC-----GRLDEQIELLKQKLRMIYH------GEAF-NGK---PTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 91 ~~~~l~~~~~~~-----g~~~~A~~~~~~al~~~~~------~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
....+|.+|... +++++|+.+|+++++..+. +..+ .+. ..+.+...+++ +.. .+++.+++.+
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~-a~~--~~~~~a~~~L 369 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRK-AAA--KGEKAAQFNL 369 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH-HHH--TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHH-HHH--CCCHHHHHHH
Confidence 444555555555 5666666666666554331 1122 111 23334444443 222 2567777777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|.. .+++++|+.+|+++++.. ++.++ +||.+|.. .+++++|..+|+++++.
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 777777 677777777777776643 34443 67777776 67777777777777766
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.61 E-value=9.8e-15 Score=101.22 Aligned_cols=101 Identities=12% Similarity=-0.014 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTAR 134 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~ 134 (287)
.++.+|..+...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|+++++++|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------- 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIALNHARMLDPK------------- 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 356677777777777777777777777777766 66777777777777777777777776666553
Q ss_pred HHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch
Q 023081 135 SHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDAN 183 (287)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 183 (287)
++.++..+|.++...|++++|+..|+++++.+|++.
T Consensus 84 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 84 -------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 667777777777777777777777777777777653
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=4e-14 Score=96.96 Aligned_cols=102 Identities=10% Similarity=-0.002 Sum_probs=96.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+..++.+|..+...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++ ..+..+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999877 78899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccch
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
++...|++++|+..++++++..|.
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC
Confidence 999999999999999998888764
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=1.8e-14 Score=116.47 Aligned_cols=162 Identities=12% Similarity=0.048 Sum_probs=129.0
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDR------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQ 88 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~ 88 (287)
...+..+|.++...|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+.+|++++.+.|.. ..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 457889999999999999999999999987532 24678899999999 99999999999999998753 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
..++..+|.+|...|++++|+..|++++.+.+.. ...+....++..+|.++...|++++|
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM--------------------ENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--------------------CChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 3578899999999999999999999999986631 11111245788899999999999999
Q ss_pred HHHHHHHHhhCCCchHH-----H-HHHHHHHhccCHHHHHH
Q 023081 169 EVVYRKAQLIDPDANKA-----C-NLSHCLIKQARYTEARS 203 (287)
Q Consensus 169 ~~~~~~al~~~~~~~~~-----~-~l~~~~~~~g~~~~A~~ 203 (287)
+.+|++++ .+|..... . .++.++ ..|+.+....
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99876422 1 455554 4666554444
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.60 E-value=1.7e-14 Score=104.53 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=77.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQE 89 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~ 89 (287)
.++..+|.++...|++++|+..+++++...+.. ..++..+|.++...|++++|+.++++++...+.. ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 455666666666666666666666666543321 2355566666666666666666666666554421 112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..+..+|.++...|++++|+..++++++..+. ....+....++..+|.++...|++++|.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--------------------LKDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------------------ccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 34555666666666666666666666655321 0001112444555666666666666666
Q ss_pred HHHHHHHhh
Q 023081 170 VVYRKAQLI 178 (287)
Q Consensus 170 ~~~~~al~~ 178 (287)
.++++++.+
T Consensus 150 ~~~~~a~~~ 158 (164)
T 3ro3_A 150 HFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 151
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.60 E-value=1.2e-14 Score=106.21 Aligned_cols=102 Identities=18% Similarity=0.046 Sum_probs=95.7
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINA------------------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
.+..+...|..++..|++++|+..|.+++.. +|....++.++|.+|...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3567889999999999999999999999998 6677789999999999999999999999999
Q ss_pred HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 80 RHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 80 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+.++|+++ .++..+|.+|...|++++|+..|+++++++|.
T Consensus 90 l~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 90 LKREETNE--KALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHSTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HhcCCcch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 99999988 78999999999999999999999999999885
No 152
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.59 E-value=1.5e-14 Score=98.23 Aligned_cols=105 Identities=16% Similarity=0.063 Sum_probs=100.5
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchh--hhHHHHH
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSK--QAQESLD 92 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 92 (287)
+|++...++.+|.++...|++++|+..|++++..+|....++..+|.++...|++++|+..++++++..|+ +. .++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK--DVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH--HHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH--HHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999998 77 789
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHhccch
Q 023081 93 NVLIDLYKKC-GRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 93 ~~l~~~~~~~-g~~~~A~~~~~~al~~~~~ 121 (287)
..+|.++... |++++|++.+++++...|.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999999999 9999999999999998774
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.59 E-value=1e-13 Score=94.86 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
+..+..+|.++...|++++|+..+++++...|+++ .++..+|.++...|++++|+..++++++..|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD----------- 70 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----------
Confidence 56788999999999999999999999999999877 78888999999999999999999998877653
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 133 ARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 133 a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
++.++..+|.++...|++++|...+++++..+|+++..+ .++.+.
T Consensus 71 ---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ---------------WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 788899999999999999999999999999999987775 666554
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-14 Score=101.18 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=100.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+...|.+...++.+|..+...|++++|+..|++++..+|++ ..++..+|.++...|++++|+..+++++...|++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~- 99 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV- 99 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-
T ss_pred CccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-
Confidence 34567888999999999999999999999999999999987 89999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 89 ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
.++..+|.++...|++++|+..|+++++..|.
T Consensus 100 -~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 100 -KALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 78899999999999999999999999888764
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.59 E-value=3e-14 Score=99.49 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=95.3
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-------hHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-------AQE 89 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~ 89 (287)
..+..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|++ .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-- 79 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA-- 79 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH--
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH--
Confidence 3467889999999999999999999999999999999999999999999999999999999999998865 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++..+|.++...|++++|+..|+++++..|
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 6888999999999999999999999998866
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.58 E-value=2e-13 Score=109.62 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=118.6
Q ss_pred HhhcCCCCc------hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 11 VVHKLPPGD------SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 11 ~l~~~p~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
.+...|... ..++.+|.++...|++++|+..|++++...+.. ..++..+|.+|...|++++|+.+|++
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~k 180 (293)
T 2qfc_A 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555433 336778999999999999999999999765433 56899999999999999999999999
Q ss_pred HHHh---chhhh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHH
Q 023081 79 FRHL---CSKQA--QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILG 153 (287)
Q Consensus 79 ~~~~---~p~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (287)
++.. .|++. ...++..+|.+|...|++++|+.++++++++.+. .......+.+++
T Consensus 181 al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~--------------------~~~~~~~~~~~~ 240 (293)
T 2qfc_A 181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR--------------------INSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTBCSSHHHHHH
T ss_pred HHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh--------------------cCcHHHHHHHHH
Confidence 9954 33321 1257889999999999999999999999988541 111222377899
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHHhh
Q 023081 154 NLGWAYMQKGNYTSA-EVVYRKAQLI 178 (287)
Q Consensus 154 ~lg~~~~~~g~~~~A-~~~~~~al~~ 178 (287)
++|.+|...|++++| ..+|++++.+
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999999999999999 8889999864
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.58 E-value=1.1e-13 Score=111.03 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=112.6
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-----hhhHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS-----KQAQESL 91 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~ 91 (287)
..+|.++...+++++|+.+|++++...+.. ..++.++|.+|...|++++|+.+|+++++... ......+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 358888888899999999999999865332 34789999999999999999999999996422 1122357
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEV 170 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~ 170 (287)
+..+|.+|...|++++|+.++++++++.+. ....+..+.+++++|.++...| .+++|+.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~--------------------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCR--------------------INSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 899999999999999999999999988652 2222334788999999999999 4799999
Q ss_pred HHHHHHhhC
Q 023081 171 VYRKAQLID 179 (287)
Q Consensus 171 ~~~~al~~~ 179 (287)
+|++++.+.
T Consensus 259 ~~~~Al~i~ 267 (293)
T 3u3w_A 259 AYKKASFFF 267 (293)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.58 E-value=1.3e-13 Score=96.27 Aligned_cols=103 Identities=12% Similarity=-0.079 Sum_probs=93.9
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD---SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNV 94 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~ 94 (287)
+.+++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++.. ..++..
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 35678999999999999999999999999999987 79999999999999999999999999999998721 167889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 95 LIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 95 l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
+|.++...|++++|+..|+++++..|.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999988774
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-13 Score=98.91 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=104.3
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhc
Q 023081 48 AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFN 126 (287)
Q Consensus 48 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 126 (287)
..|.....+..+|..+...|++++|+..|++++...|++. ...++..+|.+|...|++++|+..++++++..|.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----- 97 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----- 97 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----
Confidence 4467789999999999999999999999999999999761 1268889999999999999999999998877653
Q ss_pred CCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 127 GKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
++.+++.+|.++...|++++|+.+|++++..+|++...+ .++.+.
T Consensus 98 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 98 ---------------------DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788999999999999999999999999999999997776 566554
No 160
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=3.5e-13 Score=109.10 Aligned_cols=170 Identities=11% Similarity=0.013 Sum_probs=140.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD-RVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
++-....+....+..++|+..+.+++..+|++..+|...+.++...| .+++++..+.+++..+|++. .+|+..+.++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny--~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY--QVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH--HHHHHHHHHH
Confidence 33444444455566689999999999999999999999999999999 59999999999999999987 7888888888
Q ss_pred HHc-C-CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH--------HHH
Q 023081 100 KKC-G-RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYT--------SAE 169 (287)
Q Consensus 100 ~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~ 169 (287)
... + +++++++.+.++++.+|. +..+|...+++....|.++ +++
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpk--------------------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPK--------------------------NYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTT--------------------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 887 7 899999999988777664 7888888888888888777 888
Q ss_pred HHHHHHHhhCCCchHHH-HHHHHHHhccC-------HHHHHHHHHHHHhcccCCCCc
Q 023081 170 VVYRKAQLIDPDANKAC-NLSHCLIKQAR-------YTEARSVLEDVLLGKLSGSTE 218 (287)
Q Consensus 170 ~~~~~al~~~~~~~~~~-~l~~~~~~~g~-------~~~A~~~~~~~l~~~~~~~~~ 218 (287)
+++.++++.+|.+..+| +.+.++..+++ ++++++++.+++...+.+...
T Consensus 188 e~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~Sa 244 (349)
T 3q7a_A 188 DWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSA 244 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88888888888888887 77888877776 678888888888874433333
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=1.8e-13 Score=119.20 Aligned_cols=173 Identities=11% Similarity=0.014 Sum_probs=148.9
Q ss_pred hhCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 31 VEKD-PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR----------VDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 31 ~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..|+ .++|++.+.+++..+|++..+|+..+.++...|+ +++++..+++++..+|++. .+|...+.++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y--~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Confidence 3444 4678999999999999999999999999999998 9999999999999999988 7899999999
Q ss_pred HHcC--CHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 023081 100 KKCG--RLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEVVYRKAQ 176 (287)
Q Consensus 100 ~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al 176 (287)
...+ +++++++.++++++.+|. +..+|...+++....| .++++++++.+++
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~--------------------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I 171 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER--------------------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLI 171 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT
T ss_pred HHcccccHHHHHHHHHHHHhhccc--------------------------cccHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 9999 779999999998887664 8999999999999999 9999999999999
Q ss_pred hhCCCchHHH-HHHHHHHhc--------------cCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhccc
Q 023081 177 LIDPDANKAC-NLSHCLIKQ--------------ARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEP 234 (287)
Q Consensus 177 ~~~~~~~~~~-~l~~~~~~~--------------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 234 (287)
+.+|.+..+| +.+.++..+ +.++++++++.+++...+.+.. .+....-++...+.
T Consensus 172 ~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s---aW~y~~~ll~~~~~ 241 (567)
T 1dce_A 172 TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS---AWFYHRWLLGRAEP 241 (567)
T ss_dssp TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH---HHHHHHHHHSCCCC
T ss_pred HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc---HHHHHHHHHhcCCC
Confidence 9999999998 788888775 6689999999999998544444 33444555555443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.56 E-value=9.4e-14 Score=96.93 Aligned_cols=124 Identities=11% Similarity=0.113 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+.++..+|.++...|++++|+.++++++...|.++ .++..+|.++...|++++|+..+++++...|...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-------- 72 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM--TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-------- 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--------
Confidence 457889999999999999999999999999999887 7889999999999999999999999999876300
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhcc
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQA 196 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g 196 (287)
...+..+.+++.+|.++...|++++|+.+|++++...|+......++.+...++
T Consensus 73 -----------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 73 -----------EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 000001778999999999999999999999999999985333336776665443
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.56 E-value=2.2e-15 Score=123.49 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=76.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
....+..+|..++..|++++|+..|++++...|.+.. +...|++.++...+ ...++..+|.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 3444555555555555555555555555555554320 11122222222111 0136778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 98 LYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+|...|++++|+..|+++++++|. ++.+++++|.+|...|++++|+..|++++.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~--------------------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK--------------------------NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888889999999999988888664 678888899999999999999999999988
Q ss_pred hCCCchHHH-HHHHHH-HhccCHHHHHHHHHHHHhcc
Q 023081 178 IDPDANKAC-NLSHCL-IKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 178 ~~~~~~~~~-~l~~~~-~~~g~~~~A~~~~~~~l~~~ 212 (287)
++|++..++ .++.+. ...+..+++...|.+++...
T Consensus 293 l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 293 YAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp -------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 888887775 677774 45566778888888888764
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.56 E-value=1.1e-12 Score=105.71 Aligned_cols=174 Identities=10% Similarity=-0.035 Sum_probs=143.4
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhh
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEK--DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-VDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~ 86 (287)
.++..+|++..+|...+.+....+ ++++++.++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+
T Consensus 99 ~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 99 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 478889999999999999999888 48999999999999999999999999999999998 699999999999999988
Q ss_pred hHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHH
Q 023081 87 AQESLDNVLIDLYKKC--------------GRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRIL 152 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (287)
. .+|+..+.++... +.++++++++.+++..+| ++..+|
T Consensus 179 ~--SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P--------------------------~d~SaW 230 (331)
T 3dss_A 179 Y--SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP--------------------------NDQSAW 230 (331)
T ss_dssp H--HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST--------------------------TCHHHH
T ss_pred H--HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC--------------------------CCHHHH
Confidence 7 6788888777766 346677777776665554 589999
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCchHHH-HHHHHH---HhccCHHHHHHHHHHHHhc
Q 023081 153 GNLGWAYMQK-----------GNYTSAEVVYRKAQLIDPDANKAC-NLSHCL---IKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 153 ~~lg~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~---~~~g~~~~A~~~~~~~l~~ 211 (287)
+.+..++... +.++++++.++++++..|++...+ .++.+. ...|..++...++.++++.
T Consensus 231 ~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 231 FYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 8776666665 468999999999999999984333 233222 2467788889999999887
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.56 E-value=2.3e-13 Score=110.16 Aligned_cols=162 Identities=12% Similarity=0.007 Sum_probs=143.5
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHhchh
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEK-DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ-D-RVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~~~~~~p~ 85 (287)
-++|..+|++..+|...+.+....| .+++++.++..++..+|++..+|...+.++... + +++++++++.++++.+|+
T Consensus 78 ~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk 157 (349)
T 3q7a_A 78 EIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK 157 (349)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Confidence 3588999999999999999999998 599999999999999999999999999999988 8 899999999999999998
Q ss_pred hhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 86 QAQESLDNVLIDLYKKCGRLD--------EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 86 ~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
+. .+|...+.+....|.++ ++++.++++++.+| .+..+|+..+.
T Consensus 158 Ny--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp--------------------------~N~SAW~~R~~ 209 (349)
T 3q7a_A 158 NY--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG--------------------------RNNSAWGWRWY 209 (349)
T ss_dssp CH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT--------------------------TCHHHHHHHHH
T ss_pred CH--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHH
Confidence 87 67877777777777777 77777777666655 48999999999
Q ss_pred HHHHcCC-------HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCH
Q 023081 158 AYMQKGN-------YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARY 198 (287)
Q Consensus 158 ~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~ 198 (287)
++...++ ++++++++++++..+|++..+| ++..++...|+.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 9999987 7999999999999999999998 677777776664
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.55 E-value=1.3e-13 Score=99.83 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
..++..+|.++...|++++|+.++++++...+... ...++..+|.++...|++++|+..+++++...+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~------- 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ------- 81 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------
Confidence 46788999999999999999999999999876431 2247888999999999999999999999988652
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---c---hHHH-HHHHHHHhccCHHHH
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD---A---NKAC-NLSHCLIKQARYTEA 201 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~---~~~~-~l~~~~~~~g~~~~A 201 (287)
....+....++..+|.++...|++++|+.++++++...+. . ...+ .+|.++..+|++++|
T Consensus 82 -------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 82 -------------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -------------hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 1111113667899999999999999999999999976432 1 1222 799999999999999
Q ss_pred HHHHHHHHhcc
Q 023081 202 RSVLEDVLLGK 212 (287)
Q Consensus 202 ~~~~~~~l~~~ 212 (287)
..+++++++..
T Consensus 149 ~~~~~~a~~~~ 159 (164)
T 3ro3_A 149 MHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 167
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=3.5e-14 Score=113.32 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCC
Q 023081 50 DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKP 129 (287)
Q Consensus 50 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 129 (287)
|..+..+..+|..+...|++++|+..|++++..+|+++ .++..+|.+|...|++++|+..++++++++|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQALADCRRALELDGQ-------- 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--------
Confidence 56678999999999999999999999999999999887 78999999999999999999999998877664
Q ss_pred hhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 023081 130 TKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 182 (287)
++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 71 ------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 71 ------------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 78999999999999999999999999999988865
No 168
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.55 E-value=2.2e-13 Score=112.83 Aligned_cols=122 Identities=14% Similarity=0.072 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRH----------------LCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
..+..+|..+...|++++|+..|+++++ ..|... .++..+|.+|...|++++|+..++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 5677888888888888888888888887 555555 6889999999999999999999999888
Q ss_pred ccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhcc
Q 023081 118 MIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQA 196 (287)
Q Consensus 118 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g 196 (287)
++|. ++.+++.+|.+|...|++++|+..|+++++++|++..++ .++.++..++
T Consensus 302 ~~p~--------------------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 302 IDPS--------------------------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp TCTT--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hCch--------------------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 7664 789999999999999999999999999999999998776 8999999888
Q ss_pred CHHHHHH
Q 023081 197 RYTEARS 203 (287)
Q Consensus 197 ~~~~A~~ 203 (287)
+.+++..
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 169
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.55 E-value=1.3e-13 Score=105.25 Aligned_cols=141 Identities=10% Similarity=-0.066 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC----CHHHHHHH
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG----RLDEQIEL 111 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 111 (287)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+.. ++ .....+|.+|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~--~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DG--DALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CH--HHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH--HHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3588899999875 678999999999999999999999999998764 34 578889999988 7 89999999
Q ss_pred HHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--chHH
Q 023081 112 LKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPD--ANKA 185 (287)
Q Consensus 112 ~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~--~~~~ 185 (287)
|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++....+. ++.+
T Consensus 76 ~~~A~~~g----------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 76 AEKAVEAG----------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHTT----------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHCC----------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 99986542 68899999999998 89999999999999998884 3555
Q ss_pred H-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 186 C-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 186 ~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
+ +||.+|.. .+++++|+.+|+++++.
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 4 99999998 88999999999999986
No 170
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.54 E-value=3.4e-13 Score=111.81 Aligned_cols=111 Identities=18% Similarity=0.145 Sum_probs=90.6
Q ss_pred hHhhcCCCCch-----HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 10 HVVHKLPPGDS-----PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKDMAVVLKQQDRVDEAVEAIKS 78 (287)
Q Consensus 10 ~~l~~~p~~~~-----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (287)
+++...|.+.. ++..+|.++...|++++|+..+++++...|.. ..++..+|.++...|++++|+..+++
T Consensus 39 ~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 118 (373)
T 1hz4_A 39 LALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118 (373)
T ss_dssp HHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45566665543 57789999999999999999999999865432 24477899999999999999999999
Q ss_pred HHHhchhh------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 79 FRHLCSKQ------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 79 ~~~~~p~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
++...+.. .....+..+|.++...|++++|...+++++...+
T Consensus 119 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 99886421 1224677899999999999999999999998765
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.52 E-value=6.4e-15 Score=126.15 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.++..+|.++...|++++|+..|+++++.+|++. .++..+|.+|...|++++|+..++++++++|.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------------ 72 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGDATRAIELDKK------------ 72 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------
Confidence 4466778889999999999999999999999987 78999999999999999999999998887664
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHH--HHhccCHHHHHHHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHC--LIKQARYTEARSVLE 206 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~--~~~~g~~~~A~~~~~ 206 (287)
++.+++++|.+|...|++++|+..|+++++.+|++...+ +++.+ +..+|++++|+..++
T Consensus 73 --------------~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 73 --------------YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 789999999999999999999999999999999997776 77777 888999999999999
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.7e-12 Score=109.68 Aligned_cols=174 Identities=10% Similarity=0.048 Sum_probs=141.4
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-----------------DSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
|.+.+..|..+...|++++|++.|.++++..|.. ..++..+|.+|...|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999999987653 24688999999999999999999999988
Q ss_pred hchhh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHH
Q 023081 82 LCSKQ----AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGW 157 (287)
Q Consensus 82 ~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~ 157 (287)
..+.. ....+...++.++...|++++|+..+++++...+ .....+....++..+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~la~ 143 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK--------------------REKRVFLKHSLSIKLAT 143 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH--------------------HSSCCSSHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--------------------HhCccHHHHHHHHHHHH
Confidence 76532 1223566778888889999999999999988754 22223334778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC------chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPD------ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
+|...|+|.+|+..+++++..... ....+ .+|.+|..+|++++|..++++++...
T Consensus 144 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 144 LHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 999999999999999998874221 12333 79999999999999999999998765
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=1.5e-13 Score=93.10 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=80.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 49 GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 49 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
+|+++.++..+|.++...|++++|+..++++++..|.+. .++..+|.++...|++++|+..|+++++..|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------- 72 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDCYNYVINVIED------- 72 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-------
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-------
Confidence 466667777888888888888888888888888877665 56777777888888888888887776665441
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK-GNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~ 182 (287)
..++.++..+|.++... |++++|+.++++++...|.+
T Consensus 73 -----------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 73 -----------------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp -----------------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred -----------------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 00567777788888888 88888888888887777764
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.51 E-value=1.5e-13 Score=113.82 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=114.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAIN----------------AGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
...+..+|..+...|++++|+..|+++++ .+|....++.++|.++...|++++|+.+++++++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 67778899999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK 162 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 162 (287)
+|+++ .++..+|.+|...|++++|+..|++++++.|. +..++..++.++...
T Consensus 303 ~p~~~--~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--------------------------~~~~~~~l~~~~~~~ 354 (370)
T 1ihg_A 303 DPSNT--KALYRRAQGWQGLKEYDQALADLKKAQEIAPE--------------------------DKAIQAELLKVKQKI 354 (370)
T ss_dssp CTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------CHHHHHHHHHHHHHH
T ss_pred CchhH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------CHHHHHHHHHHHHHH
Confidence 99887 78999999999999999999999998888764 788899999999999
Q ss_pred CCHHHHHHH
Q 023081 163 GNYTSAEVV 171 (287)
Q Consensus 163 g~~~~A~~~ 171 (287)
++++++...
T Consensus 355 ~~~~~a~k~ 363 (370)
T 1ihg_A 355 KAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 888887653
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.51 E-value=6.4e-13 Score=92.74 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQ-ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
+++.+|.++...|++++|+..|++++...|++.. ..++..+|.++...|++++|+..|+++++..|..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~----------- 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH----------- 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-----------
Confidence 4677888888888888888888888888886531 1367778888888888888888888877776630
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
+..+.+++.+|.++...|++++|+..|++++...|+++...
T Consensus 73 ------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 73 ------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp ------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred ------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 00167788888888888888888888888888888876554
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=5.5e-14 Score=115.15 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
.+..+..+|..+...|++++|+..|++++...|++. . +...|++.++...+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~---~-------~~~~~~~~~~~~~l------------------- 228 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF---M-------FQLYGKYQDMALAV------------------- 228 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH---H-------HTCCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch---h-------hhhcccHHHHHHHH-------------------
Confidence 356677888888888888888888888888877654 1 11123333333211
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 132 TARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+++++|.+|...|++++|+.+|++++.++|++..++ ++|.++..+|++++|+..|+++++
T Consensus 229 ----------------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 229 ----------------KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ----------------HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 134688999999999999999999999999999998776 999999999999999999999998
Q ss_pred cccCCC
Q 023081 211 GKLSGS 216 (287)
Q Consensus 211 ~~~~~~ 216 (287)
..+.+.
T Consensus 293 l~p~~~ 298 (338)
T 2if4_A 293 YAPDDK 298 (338)
T ss_dssp ------
T ss_pred HCCCCH
Confidence 854333
No 177
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.50 E-value=1.3e-13 Score=108.13 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=137.3
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhchhhh--H---
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDM-------AVVLKQQDRVDEAVEAIKSFRHLCSKQA--Q--- 88 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~--- 88 (287)
..+..|.-+ ..+++..|.+.|.+++..+|+..++|.++ +.++...++..+++..+++.+.+.|... +
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 345666665 68999999999999999999999999999 8999999999999999999999888542 0
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 89 --------------ESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 89 --------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
..+...++.++...|+|++|.+.|..++...|. +. +.+.
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~--------------------------~~-~~~~ 140 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE--------------------------HL-VAWM 140 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH--------------------------HH-HHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--------------------------hH-HHHH
Confidence 234566888999999999999999887666553 56 8899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc--hHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDA--NKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+|.++.+.++|++|+..|+.+....+.. ..+ +++|.++..+|++++|+.+|++++..
T Consensus 141 ~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 141 KAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999887653221 223 48999999999999999999999964
No 178
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.49 E-value=4e-12 Score=108.26 Aligned_cols=184 Identities=12% Similarity=0.027 Sum_probs=141.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhhhH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAA----IVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLCSKQAQ 88 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A----~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~p~~~~ 88 (287)
+.++.+.+.+|.++...+.++++ ..+++.+...+| .+++.+|.+|...| ++++|+.+|+++.+..|...
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a- 213 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA- 213 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-
Confidence 34577888888888887744444 444444444444 48999999999999 99999999999999988766
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccc-----hhhh-hc---CCChhHHHHHHHHHhhhcCCCcHHHHHHH
Q 023081 89 ESLDNVLIDLYKKC----GRLDEQIELLKQKLRMIY-----HGEA-FN---GKPTKTARSHGKKFQVTVKQETSRILGNL 155 (287)
Q Consensus 89 ~~~~~~l~~~~~~~----g~~~~A~~~~~~al~~~~-----~~~~-~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (287)
..+..+|.+|... +++++|+.+|+++..-++ .+.. +. ......+...+++ + ..++++.+++++
T Consensus 214 -~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~-A--a~~g~~~A~~~L 289 (452)
T 3e4b_A 214 -QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN-G--RAADQPRAELLL 289 (452)
T ss_dssp -HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH-H--HHTTCHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHCCCHHHHHHH
Confidence 5567888888665 799999999999982222 2333 21 2245666666665 2 345689999999
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 156 GWAYMQKG-----NYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 156 g~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
|.+|. .| ++++|+.+|+++. +.++.+. +||.+|.. ..++++|+.+|+++.+.
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99998 55 9999999999998 7777775 99999877 44999999999999976
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.48 E-value=9.3e-14 Score=95.61 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred hhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHH
Q 023081 31 VEKDPEAAIVLFWKAINA---GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDE 107 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 107 (287)
..|++++|+..|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++ .++..+|.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHcCCHHH
Confidence 358899999999999999 588889999999999999999999999999999999887 788999999999999999
Q ss_pred HHHHHHHHHhccch
Q 023081 108 QIELLKQKLRMIYH 121 (287)
Q Consensus 108 A~~~~~~al~~~~~ 121 (287)
|+..|++++...|.
T Consensus 80 A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 80 GVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999988764
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=2.2e-13 Score=93.69 Aligned_cols=94 Identities=11% Similarity=-0.001 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHh---chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHh
Q 023081 65 QQDRVDEAVEAIKSFRHL---CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQ 141 (287)
Q Consensus 65 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~ 141 (287)
..|++++|+..|+++++. +|++. .++..+|.+|...|++++|+..|+++++..|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------- 59 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-------------------- 59 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------------
Confidence 357788888888888888 57766 67888888888888888888888887777654
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH
Q 023081 142 VTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 142 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
++.+++.+|.++...|++++|+..|++++...|+++...
T Consensus 60 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 60 ------HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp ------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 678888888888888888888888888888888876553
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.45 E-value=2.4e-13 Score=96.86 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=82.3
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRV----------DEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
.+.+.+++|+..++++++.+|+++.++.++|.++...+++ ++|+..|+++++++|++. .+++.+|.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~--~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD--EAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH--HHHHHHHHHH
Confidence 3456799999999999999999999999999999998875 599999999999999988 8899999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHhccch
Q 023081 100 KKCG-----------RLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 100 ~~~g-----------~~~~A~~~~~~al~~~~~ 121 (287)
...| ++++|+.+|+++++++|.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 9875 899999999999999985
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.43 E-value=4.5e-13 Score=95.45 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=80.5
Q ss_pred HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHH----------HHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 64 KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLD----------EQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
.+.+.+++|+..++++++++|+++ ..+..+|.++...++++ +|+..|+++++++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a--ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------------- 76 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--------------
Confidence 355679999999999999999998 88999999999988765 6666666666555
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCchHHH
Q 023081 134 RSHGKKFQVTVKQETSRILGNLGWAYMQKG-----------NYTSAEVVYRKAQLIDPDANKAC 186 (287)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~ 186 (287)
|+...+|+++|.+|...| ++++|+.+|+++++++|++..++
T Consensus 77 ------------P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 77 ------------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 458999999999999885 89999999999999999986543
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.7e-12 Score=108.40 Aligned_cols=172 Identities=9% Similarity=0.015 Sum_probs=140.1
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh----hHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD------SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ----AQES 90 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~ 90 (287)
++..+|.+|...|++++|++++.+++...+... .+...++.++...|++++|+.++++++...+.. .+..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 478999999999999999999999987654432 345678888888999999999999998876532 2346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
+...+|.+|...|+|++|...+++++.... .....+....++..+|.+|...|++++|..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFK--------------------KLDDKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT--------------------TSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHH--------------------hcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 788999999999999999999999887643 122233457889999999999999999999
Q ss_pred HHHHHHhhCC---Cch----HHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 171 VYRKAQLIDP---DAN----KAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 171 ~~~~al~~~~---~~~----~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+++++...+ +.+ ..+ .+|.++...|++++|..+|.++++..
T Consensus 197 ~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 197 SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 9999987543 221 122 68899999999999999999998765
No 184
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.40 E-value=3.7e-11 Score=111.24 Aligned_cols=189 Identities=17% Similarity=0.130 Sum_probs=118.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
.+.+.+|+.+|+++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..+.+..++. .+...+
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~---~Idt~L 1173 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES---YVETEL 1173 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc---cccHHH
Confidence 467889999999999999999999999775 667889999999999999999999998887766432 122234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc---cchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRM---IYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVV 171 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 171 (287)
|.+|.+.+++++ ++.|...... ...|..+ ....+..|..++.. +..|..+|.++.+.|++++|++.
T Consensus 1174 afaYAKl~rlee-le~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k---------A~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1174 IFALAKTNRLAE-LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHHHhhcCHHH-HHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh---------hhHHHHHHHHHHHhCCHHHHHHH
Confidence 555555555543 2222111100 0011111 22344445555442 34555666666666666666666
Q ss_pred HHHHHhhCC-------------------------CchHH-HHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHH
Q 023081 172 YRKAQLIDP-------------------------DANKA-CNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRV 225 (287)
Q Consensus 172 ~~~al~~~~-------------------------~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 225 (287)
++++....+ .++.. ..++..|...|.+++|+.+++.++.. ++.|...+...
T Consensus 1244 arKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L---eraH~gmftEL 1320 (1630)
T 1xi4_A 1244 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTEL 1320 (1630)
T ss_pred HHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---ChhHhHHHHHH
Confidence 655533222 11222 26778889999999999999999876 34444443333
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.40 E-value=3.5e-12 Score=87.30 Aligned_cols=86 Identities=13% Similarity=-0.006 Sum_probs=70.8
Q ss_pred CCccccchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 1 MSQTRDQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFR 80 (287)
Q Consensus 1 ~~~~~~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 80 (287)
|..+.+.+.+++..+|+++.+++.+|.++...|++++|+..|++++..+|+.+.++..+|.++...|++++|+..|++++
T Consensus 1 ~~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455567888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred Hhchhh
Q 023081 81 HLCSKQ 86 (287)
Q Consensus 81 ~~~p~~ 86 (287)
...|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 888754
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.39 E-value=3.7e-12 Score=84.91 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=68.3
Q ss_pred cCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 14 KLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|+..|++++++.|...
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999988654
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.8e-10 Score=102.06 Aligned_cols=204 Identities=8% Similarity=-0.016 Sum_probs=168.6
Q ss_pred hhHhhcCCCCchHHHHhHHhHHhhCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----
Q 023081 9 YHVVHKLPPGDSPYVRAKHVQLVEKDPEAAI-VLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLC---- 83 (287)
Q Consensus 9 ~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---- 83 (287)
.+.+...|..++.|+..+......|+.++|. ..|++++...|.....|..++......|++++|...|++++...
T Consensus 333 e~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~ 412 (679)
T 4e6h_A 333 MQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDL 412 (679)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 3588899999999999999999999999997 99999999999998899999999999999999999999998753
Q ss_pred -------hhh---------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--hhhhh---------cCCChhHHHHH
Q 023081 84 -------SKQ---------AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY--HGEAF---------NGKPTKTARSH 136 (287)
Q Consensus 84 -------p~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~---------~~~~~~~a~~~ 136 (287)
|.+ ....+|...+.+..+.|+.+.|..+|.++++..| ....| .+...+.+...
T Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~i 492 (679)
T 4e6h_A 413 AALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKV 492 (679)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred hhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence 210 1124688888888888999999999999998722 11121 13346778888
Q ss_pred HHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 137 GKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPD---ANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
++. ++...|+++..|...+......|+.+.|..+|++++...|+ ....| .........|+.+.+..+.+++.+..
T Consensus 493 fe~-~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 493 LEL-GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHH-HHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777 67778999999989999888999999999999999998874 34455 56777788899999999999999885
Q ss_pred c
Q 023081 213 L 213 (287)
Q Consensus 213 ~ 213 (287)
+
T Consensus 572 P 572 (679)
T 4e6h_A 572 P 572 (679)
T ss_dssp T
T ss_pred C
Confidence 3
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=6e-13 Score=90.25 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=84.5
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh----HHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA----QESLDN 93 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~~ 93 (287)
+..+++.+|.++...|++++|+..|++++..+|+++.++.++|.++...|++++|+..++++++.+|++. ...++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999999999999999999861 116777
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 023081 94 VLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 94 ~l~~~~~~~g~~~~A~~~~~ 113 (287)
.++.++...|+++.|+..++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777765544
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.33 E-value=1.4e-11 Score=80.22 Aligned_cols=86 Identities=19% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHH
Q 023081 16 PPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVL 95 (287)
Q Consensus 16 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l 95 (287)
|.++..++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|++. ..+..+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l 83 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAKQNL 83 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH--HHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999999999887 778888
Q ss_pred HHHHHHcC
Q 023081 96 IDLYKKCG 103 (287)
Q Consensus 96 ~~~~~~~g 103 (287)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 88877654
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.33 E-value=3.2e-11 Score=82.38 Aligned_cols=83 Identities=8% Similarity=-0.024 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 37 AAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKL 116 (287)
Q Consensus 37 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 116 (287)
.|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|++. ..+..+|.+|...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS--VAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999999999887 789999999999999999999999999
Q ss_pred hccch
Q 023081 117 RMIYH 121 (287)
Q Consensus 117 ~~~~~ 121 (287)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 98773
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.32 E-value=1.2e-10 Score=99.28 Aligned_cols=133 Identities=7% Similarity=-0.010 Sum_probs=109.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTK 131 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 131 (287)
..+..+..+|++++|+..++++++.. |+++ ....+..+|.+|..+|+|++|+.++++++++..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~----------- 382 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM----------- 382 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----------
Confidence 34556778999999999999998863 3332 236789999999999999999999999998743
Q ss_pred HHHHHHHHHhhhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCchHHH----HHHHHHHhccCHH
Q 023081 132 TARSHGKKFQVTVK---QETSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----IDPDANKAC----NLSHCLIKQARYT 199 (287)
Q Consensus 132 ~a~~~~~~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~----~l~~~~~~~g~~~ 199 (287)
.... |+....++++|.+|..+|++++|+..|++++. +.|+++... +++.++..++.++
T Consensus 383 ----------~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 383 ----------KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp ----------HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 1222 33566799999999999999999999999997 578887653 7999999999999
Q ss_pred HHHHHHHHHHhc
Q 023081 200 EARSVLEDVLLG 211 (287)
Q Consensus 200 ~A~~~~~~~l~~ 211 (287)
+|...|.++.+.
T Consensus 453 ~ae~~~~~~~~~ 464 (490)
T 3n71_A 453 QNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 192
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=1.9e-10 Score=106.60 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=125.2
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHh--------------------c--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAIN--------------------A--GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~--------------------~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+|.++...|.+++|...|+++-. . ..+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 47777777777777776665421 0 1345789999999999999999999999886
Q ss_pred chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-------hhhc-CCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 83 CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-------EAFN-GKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 83 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
+++ ..+..++.++.+.|++++|+++|..+.+..+.. ..|. .........+. ..+ +...+..
T Consensus 1132 --dD~--say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI------~~~-n~ad~~~ 1200 (1630)
T 1xi4_A 1132 --DDP--SSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI------NGP-NNAHIQQ 1200 (1630)
T ss_pred --CCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH------hCC-CHHHHHH
Confidence 344 567779999999999999999999999877532 2221 12223222222 123 4456778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+|..+...|+|++|..+|.++ .....++.++.++|++++|++.++++...
T Consensus 1201 iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1201 VGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 999999999999999999996 13348999999999999999999998543
No 193
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=2.8e-10 Score=90.49 Aligned_cols=152 Identities=13% Similarity=0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 38 AIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS--KQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 38 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
|+..+++.+...+....++..+|.++...|++++|+.++.+.+..+| .+. .+....+.++...|+.+.|.+.++++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--ea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66777777766555667778999999999999999999999998887 555 78889999999999999999999998
Q ss_pred HhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHH-HHHHHH
Q 023081 116 LRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG--NYTSAEVVYRKAQLIDPDANKAC-NLSHCL 192 (287)
Q Consensus 116 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~-~l~~~~ 192 (287)
.+..|+.. .. .+...+...-|++....| ++.+|...|+++....|+..... .+. ++
T Consensus 163 ~~~~~d~~-----------~~---------~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~ 221 (310)
T 3mv2_B 163 TNAIEDTV-----------SG---------DNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LH 221 (310)
T ss_dssp HHHSCHHH-----------HH---------HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HH
T ss_pred HhcCcccc-----------cc---------chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HH
Confidence 87766100 00 002333444466676666 99999999999988888732222 222 89
Q ss_pred HhccCHHHHHHHHHHHHhcc
Q 023081 193 IKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 193 ~~~g~~~~A~~~~~~~l~~~ 212 (287)
..+|++++|...++.+++..
T Consensus 222 ~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 222 LQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHTCHHHHHHHHHHHHSHH
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999877653
No 194
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.28 E-value=7.8e-13 Score=109.71 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=56.9
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+.+...++.| .+.+|..+|.++...|++++|++.|.++ .++..+..++.++...|++++|+.+++.+++..++
T Consensus 21 ~A~~fae~~~-~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~- 93 (449)
T 1b89_A 21 RAYEFAERCN-EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE- 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCC-ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-
Confidence 3344444443 4569999999999999999999999764 34568889999999999999999999988886444
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHH
Q 023081 87 AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWA 158 (287)
Q Consensus 87 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~ 158 (287)
+ .+...++.+|.+.|+++++.+.++. |++..+ ....++.|..++.. ...|..+|.+
T Consensus 94 ~--~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~---------a~n~~~LA~~ 157 (449)
T 1b89_A 94 S--YVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLAST 157 (449)
T ss_dssp -----------------CHHHHTTTTTC-----C----------------CTTTHHHHHHH---------TTCHHHHHHH
T ss_pred c--hhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHH---------hhhHHHHHHH
Confidence 4 5677788899999999998887753 332222 23356677777764 3567788888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHH
Q 023081 159 YMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLED 207 (287)
Q Consensus 159 ~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~ 207 (287)
+.+.|++++|++.++++ .++..| ....++...|+++.|..+...
T Consensus 158 L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88888888888888887 356666 677888888888888655443
No 195
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.28 E-value=1.7e-10 Score=93.40 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=100.7
Q ss_pred hHhhcCCCCchHH--HHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHHH-HH
Q 023081 10 HVVHKLPPGDSPY--VRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR-------VDEAVE-AI 76 (287)
Q Consensus 10 ~~l~~~p~~~~~~--~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~-------~~~A~~-~~ 76 (287)
.+....|.+.++| +..|..++..++ ..+|+.+|+++++.+|+.+.++..++.+|..... ...++. .+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4556678877776 556777776544 5789999999999999999999988888853211 011111 11
Q ss_pred HHH--HHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHH
Q 023081 77 KSF--RHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGN 154 (287)
Q Consensus 77 ~~~--~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (287)
+.+ +...|..+ .++..++..+...|++++|+..+++++.++| +..++..
T Consensus 265 ~a~~a~~~~~~~a--~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~---------------------------s~~a~~l 315 (372)
T 3ly7_A 265 DNIVTLPELNNLS--IIYQIKAVSALVKGKTDESYQAINTGIDLEM---------------------------SWLNYVL 315 (372)
T ss_dssp HHHHTCGGGTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---------------------------CHHHHHH
T ss_pred HHHHhcccCCcCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------------------------CHHHHHH
Confidence 111 13345545 5666666666667888888888888777765 4566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
+|.++...|++++|++.|.+|+.++|..+..
T Consensus 316 lG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 316 LGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 7888888888888888888888888877543
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.25 E-value=9.2e-11 Score=100.10 Aligned_cols=133 Identities=13% Similarity=0.012 Sum_probs=107.8
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHH
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINA-----GDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESL 91 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~ 91 (287)
+..+..+|+|++|+.+++++++. +|++ ..++.+||.+|..+|++++|+.+++++++.. |+++ ....
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999999964 3444 5678899999999999999999999998763 3332 2256
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---cHHHHHHHHHHHHHcCCHHHH
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE---TSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A 168 (287)
++.+|.+|..+|++++|..+|++++++.. ....|+ ...+..+++.++..++.+++|
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~---------------------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILL---------------------VTHGPSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH---------------------HHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998843 233344 355567899999999999999
Q ss_pred HHHHHHHHhhC
Q 023081 169 EVVYRKAQLID 179 (287)
Q Consensus 169 ~~~~~~al~~~ 179 (287)
...|+++.+..
T Consensus 455 e~~~~~~~~~~ 465 (490)
T 3n71_A 455 EFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.25 E-value=6.2e-12 Score=85.15 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+.++..+|.++...|++++|+..|+++++.+|+++ .++..+|.++...|++++|+..|++++++.|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34566666666666666666666666666666555 5566666666666666666666666665554
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.25 E-value=2.2e-11 Score=101.07 Aligned_cols=195 Identities=12% Similarity=0.094 Sum_probs=92.3
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLI 96 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~ 96 (287)
+++..+...+..+...|++++|+.+++.+.+..++ +.+...++.+|.+.|++.++.++++. |+. ..+..+|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~---~a~~~IG 129 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFING-----PNN---AHIQQVG 129 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-----C------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcC-----CcH---HHHHHHH
Confidence 46679999999999999999999999988885444 57788899999999999998887752 543 4788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhh-cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAF-NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
..+...|.|++|..+|.++-.....+.++ .-..++.|.+.+++. +++.+|...+.++...|+++.|..+...
T Consensus 130 d~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp -------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 99999999999999999874333345555 344577777777762 4788999999999999999999776664
Q ss_pred HhhCCCchHHHHHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhc
Q 023081 176 QLIDPDANKACNLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 176 l~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
+...|+. ...++.+|.+.|++++|+.+++.++.. ++.+...+....-+..+.
T Consensus 203 L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l---e~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 203 IVVHADE--LEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKF 254 (449)
T ss_dssp TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTT
T ss_pred HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHhc
Confidence 3333433 236888899999999999999999976 456655555554444333
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.22 E-value=7.7e-11 Score=78.41 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=63.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 144 VKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 144 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++ ++|.++..+|++++|+..|+++++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999999999999999998886 89999999999999999999999874
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.21 E-value=1.9e-10 Score=74.73 Aligned_cols=85 Identities=26% Similarity=0.242 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 51 RVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 51 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
..+.++..+|.++...|++++|+.++++++...|++. .++..+|.++...|++++|+..|+++++..|.
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------- 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--------- 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------
Confidence 3567899999999999999999999999999999887 78899999999999999999999998887664
Q ss_pred hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 131 KTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
++.++..+|.++...|
T Consensus 76 -----------------~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 -----------------NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----------------CHHHHHHHHHHHHHHC
T ss_pred -----------------CHHHHHHHHHHHHhcC
Confidence 7888999999887654
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=8.2e-10 Score=78.02 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=88.7
Q ss_pred hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH----cCCHHH
Q 023081 32 EKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK----CGRLDE 107 (287)
Q Consensus 32 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~g~~~~ 107 (287)
.+++++|+.+|+++.+.++.. +. +|.+|...+.+++|+.+|+++.+.. ++ ...+.+|.+|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~--~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACELN--SG--NGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC--CH--HHHHHHHHHHHcCCCCCccHHH
Confidence 357888999998888876444 33 8888888888888988888888763 33 567788888888 788888
Q ss_pred HHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 023081 108 QIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 108 A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 179 (287)
|+.+|+++.+.. ++.+++++|.+|.. .+++++|+.+|+++.+..
T Consensus 80 A~~~~~~Aa~~g----------------------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN----------------------------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC----------------------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 888888887652 57788888888888 888888888888887763
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.17 E-value=8.4e-11 Score=77.89 Aligned_cols=89 Identities=10% Similarity=0.063 Sum_probs=77.5
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS-ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+..|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++.+|++. .++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~------ 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP--ALQAR------ 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--HHHHH------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH--HHHHH------
Confidence 367899999999999999999999999999999 999999999999999999999999999999876 33321
Q ss_pred HcCCHHHHHHHHHHHHhccc
Q 023081 101 KCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~ 120 (287)
+.+.+++..|+++....|
T Consensus 75 --~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 75 --KMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp --HHHHHHHHHHCCTTHHHH
T ss_pred --HHHHHHHHHHHHHhccCc
Confidence 566777888887776665
No 203
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.10 E-value=5.3e-09 Score=92.66 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=141.8
Q ss_pred cchhhHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc-----------CCC-----------CHHHHHHHHHHH
Q 023081 6 DQPYHVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA-----------GDR-----------VDSALKDMAVVL 63 (287)
Q Consensus 6 ~~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------~~~-----------~~~~~~~la~~~ 63 (287)
+-+-+++..+|.+...++..+......|+++.|...|++++.. .|. ...+|...+...
T Consensus 365 ~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 365 KYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 3344688899999888999999999999999999999999974 243 345788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccchhhhhc---------CCChhHH
Q 023081 64 KQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCG-RLDEQIELLKQKLRMIYHGEAFN---------GKPTKTA 133 (287)
Q Consensus 64 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~a 133 (287)
.+.|+.+.|..+|.++++..|...+ .++...+.+-...+ +++.|..+|+.+++..|....+. ......+
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~-~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTP-DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCT-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999987332211 45666666666655 49999999999999988544331 2346677
Q ss_pred HHHHHHHhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHH
Q 023081 134 RSHGKKFQVTVKQ---ETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNL 188 (287)
Q Consensus 134 ~~~~~~~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 188 (287)
...+++ ++...| ....+|......-...|+.+.+....+++.+..|+++..-.+
T Consensus 524 R~lfer-al~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 524 KSLFES-SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHH-HTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 777777 666666 356788888888889999999999999999999998655433
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.06 E-value=3.2e-10 Score=75.02 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES-LDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
..|.++...|++++|+..|+++++.+|++. . ++..+|.+|...|++++|+..|+++++++|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGK--DEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTH--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344444555555555555555555555444 3 444445555555555555555554444433
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.06 E-value=3.6e-09 Score=74.67 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCC
Q 023081 67 DRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQ 146 (287)
Q Consensus 67 g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (287)
+++++|+.+|+++.+...... . +|.+|...+.+++|+.+|+++.+..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a----~--lg~~y~~g~~~~~A~~~~~~Aa~~g--------------------------- 55 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFG----C--LSLVSNSQINKQKLFQYLSKACELN--------------------------- 55 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTH----H--HHHHTCTTSCHHHHHHHHHHHHHTT---------------------------
T ss_pred cCHHHHHHHHHHHHcCCCHhh----h--HHHHHHcCCCHHHHHHHHHHHHcCC---------------------------
Confidence 468999999999998865433 2 8999999899999999999988763
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHh----ccCHHHHHHHHHHHHhc
Q 023081 147 ETSRILGNLGWAYMQ----KGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIK----QARYTEARSVLEDVLLG 211 (287)
Q Consensus 147 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~----~g~~~~A~~~~~~~l~~ 211 (287)
++.+++++|.+|.. .+++++|+.+|+++.+. .++..+ +||.+|.. .+++++|+.+|+++.+.
T Consensus 56 -~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 56 -SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 68899999999999 89999999999999876 555554 99999999 89999999999999987
No 206
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=3e-09 Score=69.31 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=67.4
Q ss_pred cCCCCchHHHHhHHhHHhhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 14 KLPPGDSPYVRAKHVQLVEKD---PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 14 ~~p~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
.+|++++.+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|++++|+.+++++++.+|..+
T Consensus 1 ~~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 1 SNAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp -CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 368999999999999987666 79999999999999999999999999999999999999999999999998754
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.92 E-value=8.3e-09 Score=86.68 Aligned_cols=107 Identities=7% Similarity=0.016 Sum_probs=84.4
Q ss_pred HcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 101 KCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE---TSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 101 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
..|+|++|+..+++++++.. ..+.|+ ...++.++|.+|..+|+|++|+.++++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~---------------------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS---------------------SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT---------------------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhh---------------------CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 45789999999999988743 122333 466789999999999999999999999997
Q ss_pred -----hCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCchhHHHHHHHHH
Q 023081 178 -----IDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTETKTINRVKELL 229 (287)
Q Consensus 178 -----~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~l 229 (287)
..|+++.. + +||.+|..+|++++|..+|++++++. ..+++|+.+ ..+...|
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~-~~l~~~l 430 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI-SEIKQEI 430 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH-HHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH-HHHHHHH
Confidence 46677654 2 89999999999999999999999876 567788655 3344433
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.91 E-value=7.6e-08 Score=78.01 Aligned_cols=147 Identities=8% Similarity=-0.103 Sum_probs=102.3
Q ss_pred HHHhcCCCCHHH--HHHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH---cC-CHHHHHHHHHH
Q 023081 44 KAINAGDRVDSA--LKDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK---CG-RLDEQIELLKQ 114 (287)
Q Consensus 44 ~al~~~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~---~g-~~~~A~~~~~~ 114 (287)
++....|.++.+ ++..|..+...++ +.+|+.+|+++++++|+.+ .++..++.+|.. .+ ........+..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a--~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT--YARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 344445666554 4455666665554 5899999999999999987 344444444431 11 11111111222
Q ss_pred HHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHh
Q 023081 115 KLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKACNLSHCLIK 194 (287)
Q Consensus 115 al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 194 (287)
++.. . .++...|.++.++..++..+...|++++|+..+++++.++|+......+|.++..
T Consensus 263 a~~a------------------~--~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 263 EIDN------------------I--VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEM 322 (372)
T ss_dssp HHHH------------------H--HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHH------------------H--HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2111 0 0456678899999999999999999999999999999999763322378999999
Q ss_pred ccCHHHHHHHHHHHHhcc
Q 023081 195 QARYTEARSVLEDVLLGK 212 (287)
Q Consensus 195 ~g~~~~A~~~~~~~l~~~ 212 (287)
.|++++|+..|.+++...
T Consensus 323 ~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNLR 340 (372)
T ss_dssp TTCHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999999983
No 209
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.90 E-value=5.7e-07 Score=77.25 Aligned_cols=163 Identities=12% Similarity=0.046 Sum_probs=129.1
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHh--chhhhHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDR---------VDEAVEAIKSFRHL--CSKQAQE 89 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~~~~--~p~~~~~ 89 (287)
+..+-..+...|+.++|+++|+++.+.+ +-+...+..+-.++...+. .++|.+.|++.... .|+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~--- 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE--- 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH---
Confidence 4444466778999999999999998765 2234677777777765543 78999999998765 3554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..++.+...|.+.|++++|.++|+++.+..- .| +..+|..+-..|.+.|++++|.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~------------------------~P-d~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGI------------------------QP-RLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC------------------------CC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------------------CC-ccceehHHHHHHHHCCCHHHHH
Confidence 4788999999999999999999998876421 11 5778889999999999999999
Q ss_pred HHHHHHHhhC--CCchHHHHHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLID--PDANKACNLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..|+++.+.. |+...+..|..++.+.|+.++|..++++..+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999998754 444444478999999999999999999988764
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.88 E-value=9.5e-08 Score=80.36 Aligned_cols=116 Identities=12% Similarity=0.031 Sum_probs=89.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----chhhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHH
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHL-----CSKQA-QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTA 133 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a 133 (287)
..-+...|++++|+..++++++. .|+++ ....+..++.+|..+|+|++|+.++++++++...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~------------ 361 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRI------------ 361 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHH------------
Confidence 44566789999999999999875 33433 2367889999999999999999999999987431
Q ss_pred HHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCchHHH----HHHHHHHh
Q 023081 134 RSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQL-----IDPDANKAC----NLSHCLIK 194 (287)
Q Consensus 134 ~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~----~l~~~~~~ 194 (287)
.+ ...|.....++++|.+|..+|++++|+..|+++++ +.|+++... +|+.+...
T Consensus 362 -------~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 362 -------FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp -------HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 00 12233466789999999999999999999999997 467776543 56666543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.87 E-value=5.6e-08 Score=63.27 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccC
Q 023081 145 KQETSRILGNLGWAYMQKGN---YTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 145 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 214 (287)
+|+++.++..+|.+++..++ .++|...++++++.+|+++.+. .+|..++..|++++|+.+|+++++..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999986666 7999999999999999998886 8999999999999999999999998654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.84 E-value=3.9e-08 Score=82.64 Aligned_cols=90 Identities=12% Similarity=-0.026 Sum_probs=75.6
Q ss_pred HhhCCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-----hhhh-HHHHHHHH
Q 023081 30 LVEKDPEAAIVLFWKAINA-----GDRV---DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC-----SKQA-QESLDNVL 95 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~~-----~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~-~~~~~~~l 95 (287)
...|+|++|+..|+++++. .|++ ..++.+||.+|..+|++++|+.++++++... |+++ ....++.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3458899999999999974 3555 5678899999999999999999999998762 2332 22568899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
|.+|..+|++++|+.+|++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999984
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.83 E-value=1.4e-07 Score=73.58 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhC
Q 023081 105 LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQK-----GNYTSAEVVYRKAQLID 179 (287)
Q Consensus 105 ~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~ 179 (287)
...|...++++++++|... +..+|..+|.+|... |+.++|..+|+++++++
T Consensus 179 l~~A~a~lerAleLDP~~~------------------------~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln 234 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQ------------------------EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC 234 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHH------------------------HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCcc------------------------cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC
Confidence 5789999999999998654 578888899999995 99999999999999999
Q ss_pred CCc-hHHH-HHHHHHHh-ccCHHHHHHHHHHHHhcccC
Q 023081 180 PDA-NKAC-NLSHCLIK-QARYTEARSVLEDVLLGKLS 214 (287)
Q Consensus 180 ~~~-~~~~-~l~~~~~~-~g~~~~A~~~~~~~l~~~~~ 214 (287)
|+. ...+ .+|..+.. .|++++|..++++++...+.
T Consensus 235 P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 235 SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 975 6665 78888877 59999999999999988644
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.81 E-value=6.4e-07 Score=69.84 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHhhhcCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 023081 127 GKPTKTARSHGKKFQVTVKQET-SRILGNLGWAYMQ-KGNYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~ 182 (287)
+...+.+..++++ ++.++|+. ..+++..|..+.. .|++++|..++++++..+|..
T Consensus 217 gGd~ekA~~~fer-AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 217 GGGMEKAHTAFEH-LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCCHHHHHHHHHH-HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CCCHHHHHHHHHH-HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 4567778888887 78888864 8888888888777 488888888888888877663
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.79 E-value=8.4e-08 Score=80.69 Aligned_cols=106 Identities=8% Similarity=0.017 Sum_probs=84.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhh-hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 97 DLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQV-TVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.-+..+|+|++|+..+++++++... .+ ..+|....++.++|.+|..+|+|++|+.+++++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~-------------------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSE-------------------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSC-------------------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccC-------------------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3456789999999999999987431 00 112234677899999999999999999999999
Q ss_pred Hh-----hCCCchHH---H-HHHHHHHhccCHHHHHHHHHHHHhcc--cCCCCchhH
Q 023081 176 QL-----IDPDANKA---C-NLSHCLIKQARYTEARSVLEDVLLGK--LSGSTETKT 221 (287)
Q Consensus 176 l~-----~~~~~~~~---~-~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~ 221 (287)
+. ..|+++.. + +||.+|..+|++++|..+|++++++. ..+++|+.+
T Consensus 356 L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 356 MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 97 35666654 2 89999999999999999999999876 567777655
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.78 E-value=7.7e-08 Score=64.15 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=65.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQES 90 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 90 (287)
++.-++.+|..++..++|..|+.+|+.|+... +..+.++..+|.++.+.|++++|+.++++++...|++. .
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~--~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ--R 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--H
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--H
Confidence 45668899999999999999999999999753 34578899999999999999999999999999999886 4
Q ss_pred HHHHH
Q 023081 91 LDNVL 95 (287)
Q Consensus 91 ~~~~l 95 (287)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 44444
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.70 E-value=3e-07 Score=64.78 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhc-h-hhhHHHHHHHHHHHHHHcCCHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD---RVDEAVEAIKSFRHLC-S-KQAQESLDNVLIDLYKKCGRLDEQ 108 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~~~l~~~~~~~g~~~~A 108 (287)
....+.+.|.+.+..++.+.++.+++|+++.+.+ +.++++..++.+++.+ | ++. ...+.+|..|.+.|+|++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r--d~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR--DYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH--HHHHHHHHHHHHccCHHHH
Confidence 3556777777777777878888888888888887 5668888888888887 6 334 6778888888888899999
Q ss_pred HHHHHHHHhccch
Q 023081 109 IELLKQKLRMIYH 121 (287)
Q Consensus 109 ~~~~~~al~~~~~ 121 (287)
.+++++++++.|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9988888888874
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.69 E-value=2.1e-07 Score=61.97 Aligned_cols=80 Identities=20% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
-...+|..++..|+|..|+.+|+++++..+. .....+..+.++..+|.++.+.|++++|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~-------------------~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDE-------------------GEISTIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------------TCCCSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhc-------------------cCCCcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 4567899999999999999999999987432 001123357889999999999999999999
Q ss_pred HHHHHHhhCCCchHHH-HHH
Q 023081 171 VYRKAQLIDPDANKAC-NLS 189 (287)
Q Consensus 171 ~~~~al~~~~~~~~~~-~l~ 189 (287)
++++++.+.|++..+. +++
T Consensus 68 ~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 68 LTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHhhHH
Confidence 9999999999997774 554
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=8.8e-08 Score=67.45 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=73.7
Q ss_pred ccchhhHhhcCCCCchHHHHhHHhHHhhC---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 5 RDQPYHVVHKLPPGDSPYVRAKHVQLVEK---DPEAAIVLFWKAINAG-D-RVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 5 ~~~~~~~l~~~p~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+.+....+...|.+.++.++.|.++...+ +..+++..++..++.+ | +..++++.+|..+++.|+|++|+.+++++
T Consensus 18 ~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 18 EKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33444566778889999999999999988 6779999999999988 6 56899999999999999999999999999
Q ss_pred HHhchhhh
Q 023081 80 RHLCSKQA 87 (287)
Q Consensus 80 ~~~~p~~~ 87 (287)
++..|++.
T Consensus 98 L~ieP~n~ 105 (152)
T 1pc2_A 98 LQTEPQNN 105 (152)
T ss_dssp HHHCTTCH
T ss_pred HhcCCCCH
Confidence 99999886
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=6e-06 Score=70.85 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=69.6
Q ss_pred hHhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 023081 10 HVVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL------- 82 (287)
Q Consensus 10 ~~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------- 82 (287)
+++...|..+..|+..+......|+.+.|...|++++.. |.....+...+... ..+ +. ++++...
T Consensus 204 ~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHHHTC-----
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHHHHHhhccc
Confidence 477788999999999999999999999999999999999 98876666544431 111 11 2222111
Q ss_pred -----chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 83 -----CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQK 115 (287)
Q Consensus 83 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 115 (287)
.+..+ ..+|...+....+.++.+.|...|.++
T Consensus 276 ~~~~~~~~~~-~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 276 SAEKVFSKEL-DLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp -----CHHHH-HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhhccccc-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 11111 246777777877888999999999999
No 221
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.44 E-value=1.3e-05 Score=68.76 Aligned_cols=166 Identities=9% Similarity=-0.025 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
.......|++++...|..+..|...+..+...|+.++|..+|++++.. |.+. .++...+.. .+.++....+..
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~--~l~~~y~~~----~e~~~~~~~l~~ 267 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM--FLSLYYGLV----MDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS--HHHHHHHHH----TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH--HHHHHHHhh----cchhHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999 9765 344433332 111111111111
Q ss_pred HHhcc--------c---hhhhh--------cCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 023081 115 KLRMI--------Y---HGEAF--------NGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG-NYTSAEVVYRK 174 (287)
Q Consensus 115 al~~~--------~---~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 174 (287)
..... + ....| .....+.+...+.+ + ...+....+|...|.+-...+ +++.|...|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~-A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE-L-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-H-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH-h-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 11000 0 00111 01124556666665 3 222235667777777766666 69999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
+++..|+.+..| ..+......|+.+.|...|+++.
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999887776 66777788999999998888863
No 222
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.24 E-value=8.7e-05 Score=51.54 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHH
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKE 227 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 227 (287)
...|...+.. ...++.++|.+.|+.+++....+...| ..|....++|+...|.+.+.+++.. .+.....++.+..
T Consensus 61 I~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~---~~k~~~~le~a~~ 136 (161)
T 4h7y_A 61 ARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER---GAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCBCHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CCCcHHHHHHHHH
Confidence 3334444433 344566666666666665555554444 4555556666666666666666654 3334444444444
Q ss_pred HHHh
Q 023081 228 LLQE 231 (287)
Q Consensus 228 ~l~~ 231 (287)
.|..
T Consensus 137 nl~~ 140 (161)
T 4h7y_A 137 NLNL 140 (161)
T ss_dssp HHHT
T ss_pred hhhc
Confidence 4443
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.20 E-value=0.00013 Score=62.57 Aligned_cols=119 Identities=11% Similarity=0.039 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 33 KDPEAAIVLFWKAINAG-DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL--CSKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
++.+.|.+.|++....+ +-+..++..+...|.+.|++++|..+|++..+. .|+. ..++.+...|.+.|+.++|.
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL---RSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH---HHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc---ceehHHHHHHHHCCCHHHHH
Confidence 34788999999988765 224578999999999999999999999998765 3553 57888999999999999999
Q ss_pred HHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 110 ELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 110 ~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
++|+.+.+..- .| +..+|..+..++.+.|++++|...+++.-+..
T Consensus 161 ~l~~~M~~~G~------------------------~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 161 EVDAHMVESEV------------------------VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHTTC------------------------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC------------------------CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 99999876421 12 57788999999999999999999999987654
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.14 E-value=1.2e-05 Score=54.43 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhc-hhhhHHHHHHHHHHHHHHcCCHHHHH
Q 023081 34 DPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDE---AVEAIKSFRHLC-SKQAQESLDNVLIDLYKKCGRLDEQI 109 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~ 109 (287)
....+.+.|.+....++...++.+++|+++.+..+... ++..++..+... |... -...+.+|..+++.|+|++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-RDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555555555555666666666666555443 666666666555 4211 145555666666666666666
Q ss_pred HHHHHHHhccc
Q 023081 110 ELLKQKLRMIY 120 (287)
Q Consensus 110 ~~~~~al~~~~ 120 (287)
.+++..++..|
T Consensus 95 ~~~~~lL~~eP 105 (126)
T 1nzn_A 95 KYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHhCC
Confidence 66666666665
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.12 E-value=4.8e-05 Score=53.92 Aligned_cols=95 Identities=12% Similarity=-0.005 Sum_probs=74.7
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch---hhh
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAG---DRV------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---KQA 87 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~ 87 (287)
.+++.-.+..+..+.|+.|+-....++... |+. .+++..+|.+++..|+|.+|...|++++.... +..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777788889999999999998876543 332 34788999999999999999999999876522 110
Q ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 88 --------------------QESLDNVLIDLYKKCGRLDEQIELLKQ 114 (287)
Q Consensus 88 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 114 (287)
..++.+.++.||.+.|++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 115778899999999999999998774
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.08 E-value=0.00012 Score=50.79 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=87.6
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCH------HHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDP------EAAIVLFWKAINAGDRV--------DSALKDMAVVLKQQDRVDEAVEAIK 77 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~ 77 (287)
|-..|++++.|+.........|++ ++-++.|++|+..-|-. +..|...|.. ...++.++|.+.|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 445799999999988888888999 99999999999866542 4556667755 56699999999999
Q ss_pred HHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 78 SFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 78 ~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
.++..+...+ .+|...|..-.++|+..+|.+.+.+++.+.|
T Consensus 85 ~a~~~hKkFA--Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCKKFA--FVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCTTBH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHH--HHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 9998865554 7899999999999999999999999999877
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.04 E-value=8.1e-05 Score=50.45 Aligned_cols=81 Identities=10% Similarity=0.028 Sum_probs=70.2
Q ss_pred chhhHhhcCCCCchHHHHhHHhHHhhCCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 7 QPYHVVHKLPPGDSPYVRAKHVQLVEKDPEA---AIVLFWKAINAG-D-RVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 7 ~~~~~l~~~p~~~~~~~~lg~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
+....+...+.+..+.+.+|..+....+... ++.+++..+..+ | ..-+.++.||..+++.|+|++|..+++.+++
T Consensus 23 ~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 23 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344566677889999999999999887777 999999998876 5 4568899999999999999999999999999
Q ss_pred hchhhh
Q 023081 82 LCSKQA 87 (287)
Q Consensus 82 ~~p~~~ 87 (287)
..|++.
T Consensus 103 ~eP~n~ 108 (126)
T 1nzn_A 103 TEPQNN 108 (126)
T ss_dssp HCTTCH
T ss_pred hCCCCH
Confidence 999886
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.96 E-value=0.00018 Score=50.98 Aligned_cols=118 Identities=8% Similarity=-0.074 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhh-c
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA-------QESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAF-N 126 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 126 (287)
+++.-...+...|.|+.|+-....++....+++ ...+...+|+.++..|+|..|...|+++++......-. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455566777889999999999998877643321 23478889999999999999999999998864310000 0
Q ss_pred CC-ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 127 GK-PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 127 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
.. ... ....... ... .+.+.++.+.++.||.+.|++++|+..++.+
T Consensus 102 ~~~~~~-~~ss~p~-s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTG-NSASTPQ-SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccc-ccCCCcc-ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 00 000 0000000 000 1234577788888888888888888887654
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0043 Score=55.48 Aligned_cols=136 Identities=15% Similarity=0.204 Sum_probs=88.3
Q ss_pred HHcCC-HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhccchh-hhhcCCChhHHHHHHHHH
Q 023081 64 KQQDR-VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC-GRLDEQIELLKQKLRMIYHG-EAFNGKPTKTARSHGKKF 140 (287)
Q Consensus 64 ~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~a~~~~~~~ 140 (287)
...|+ ++.|+..+++....+|..... +...+..+.... .+--+|+..+.++++..... ..........
T Consensus 259 ~~t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~-------- 329 (754)
T 4gns_B 259 AITPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS-------- 329 (754)
T ss_dssp HTCGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH--------
T ss_pred cccccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc--------
Confidence 34555 688999999999999975411 111222222222 23456777777776532100 0000000000
Q ss_pred hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHH
Q 023081 141 QVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVL 209 (287)
Q Consensus 141 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l 209 (287)
....|-....+...+..+...|+++-|+...++++...|..-..| .|+.+|..+|+++.|+-.++.+-
T Consensus 330 -~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 -ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred -ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000111344667778888899999999999999999999998888 89999999999999998887763
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.44 E-value=0.0013 Score=44.75 Aligned_cols=67 Identities=9% Similarity=-0.084 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc
Q 023081 53 DSALKDMAVVLKQQDR---VDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIY 120 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 120 (287)
+++.+++|+++.+..+ ..+++..++..+...|... ....+.++..+.+.|+|++|..+.+..++..|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~-Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR-RECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3555555555555543 2345555555555554221 13455555555555555555555555555555
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.43 E-value=0.0018 Score=44.58 Aligned_cols=69 Identities=4% Similarity=-0.046 Sum_probs=34.7
Q ss_pred CchHHHHhHHhHHhhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 18 GDSPYVRAKHVQLVEKDP---EAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+..+.|+.|.......+. .+++.+++..+...|. .-+.++.||..+++.|+|++|..+.+.+++..|++
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 344455555555444322 2455555555554442 23445555555555555555555555555555544
No 232
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.41 E-value=0.022 Score=46.98 Aligned_cols=174 Identities=13% Similarity=0.060 Sum_probs=120.1
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHH-cCCHHHHHHHHHHHHHhchhh--hHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDS-----ALKDMAVVLKQ-QDRVDEAVEAIKSFRHLCSKQ--AQES 90 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~--~~~~ 90 (287)
..+.+.+|..|...|++++-.+++......-+..+. ....+-..+.. .+..+.-++.+..+++...+. .|..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999999999988888766544333322 22334444433 355666677777777654433 1112
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 023081 91 --LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSA 168 (287)
Q Consensus 91 --~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 168 (287)
+-..+|.+|...|+|.+|...+.+.++-... +.....-.+++.....+|...+++.++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------------------~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKK--------------------LDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------------SSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------------------cccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3447899999999999999999888765321 000011356677788899999999999
Q ss_pred HHHHHHHHhhC---CCchHH---H--HHHHHHH-hccCHHHHHHHHHHHHhcc
Q 023081 169 EVVYRKAQLID---PDANKA---C--NLSHCLI-KQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 169 ~~~~~~al~~~---~~~~~~---~--~l~~~~~-~~g~~~~A~~~~~~~l~~~ 212 (287)
...+.++.... +.++.. . .-|..+. ..++|..|...|-++.+.+
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 99999887643 122322 1 5688888 8999999999999988654
No 233
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=97.04 E-value=0.012 Score=54.19 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
..++.+.+.|++.|+.++|..+|..+.+... ... .-+..+|+.+...|.+.|++++|.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~---------------------kG~-~PdvvTYNtLI~Glck~G~~~eA~ 185 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ---------------------KRK-LLTLDMYNAVMLGWARQGAFKELV 185 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH---------------------HHT-TCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh---------------------cCC-CCCHhHHHHHHHHHHhCCCHHHHH
Confidence 4688899999999999999999987654311 001 116888999999999999999999
Q ss_pred HHHHHHHhhC--CCchHHHHHHHHHHhccCH-HHHHHHHHHHHhcc
Q 023081 170 VVYRKAQLID--PDANKACNLSHCLIKQARY-TEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~~~--~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~ 212 (287)
+.|+++.... |+...+..+..++.+.|+. ++|..+|++..+..
T Consensus 186 ~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 9999998754 5444444677788888984 78899999998864
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.02 E-value=0.011 Score=40.16 Aligned_cols=70 Identities=4% Similarity=-0.047 Sum_probs=61.7
Q ss_pred CchHHHHhHHhHHhhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 18 GDSPYVRAKHVQLVEKDP---EAAIVLFWKAINAGDR-VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
++.+-++.|.......+. ..++.+++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 568889999988877654 5799999999988884 478899999999999999999999999999999886
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.037 Score=49.58 Aligned_cols=114 Identities=9% Similarity=0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHhc--------hh--------hhHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLK--QQ-DRVDEAVEAIKSFRHLC--------SK--------QAQESLDNVL 95 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~~~~~--------p~--------~~~~~~~~~l 95 (287)
++.|+..+++....+|.. .+++..+.+.. .. .+--+|+..+.+.++.. +. +....+....
T Consensus 265 ~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 688999999999988876 34333333322 12 23456777777766421 10 0111356667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 96 IDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 96 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+..+...|+++-|+.+.++++...|. .-..|..|+.+|..+|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPs--------------------------eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALD--------------------------SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS--------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCch--------------------------hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 88888999999999999998777664 7899999999999999999999887765
No 236
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.87 E-value=0.018 Score=52.92 Aligned_cols=98 Identities=8% Similarity=-0.067 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCC
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGK 128 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 128 (287)
..+..+-..|.+.|+.++|...|.+..+. .|+- ..|+.+...|++.|+.++|.++|+++.+..-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv---vTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL---DMYNAVMLGWARQGAFKELVYVLFMVKDAGL-------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------
Confidence 45778889999999999999999776533 3443 5899999999999999999999999876431
Q ss_pred ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhC
Q 023081 129 PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNY-TSAEVVYRKAQLID 179 (287)
Q Consensus 129 ~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~ 179 (287)
.| +..+|+.+-.++.+.|+. ++|...|+++....
T Consensus 197 ----------------~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 197 ----------------TP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----------------CC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ----------------CC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 12 577788888888888874 78889999888754
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.76 E-value=0.094 Score=43.32 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=78.6
Q ss_pred HHHcCCHHHHHHHHHHHHhccchhhhhc---CC-ChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023081 99 YKKCGRLDEQIELLKQKLRMIYHGEAFN---GK-PTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRK 174 (287)
Q Consensus 99 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~-~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 174 (287)
....|+.+.|...+++++.+.. |..+. .. ........++.. ...+...++..+...|++.+|+..+..
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~r-G~~L~~~~~~~w~~~~r~~l~~~-------~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWR-GPVLDDLRDFQFVEPFATALVED-------KVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCC-SSTTGGGTTSTTHHHHHHHHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcC-CCCCCCCCchhHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456899999999999999864 22221 11 111212222221 245567788899999999999999999
Q ss_pred HHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 175 AQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 175 al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
++..+|-+...+ .+..++...|+..+|+..|+++...
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998887 8999999999999999999887654
No 238
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.63 E-value=0.1 Score=40.18 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=49.4
Q ss_pred hHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhh
Q 023081 28 VQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQA 87 (287)
Q Consensus 28 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 87 (287)
..+..|+.++|+......++.+|.++.....+...+.-.|++++|...++.+.+++|+..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 345678888888888888888888888888888888888888888888888888888653
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.54 E-value=0.1 Score=35.96 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=57.2
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCch-HH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 146 QETSRILGNLGWAYMQKGNY---TSAEVVYRKAQLIDPDAN-KA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~-~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..++.+.+++||++.+..+. .+++..++..+...|... +. +.||..+.++|+|++|..+.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44789999999999988765 579999999999888653 33 48999999999999999999999998
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.52 E-value=0.12 Score=36.70 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=110.6
Q ss_pred CCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h--ch------
Q 023081 15 LPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH--L--CS------ 84 (287)
Q Consensus 15 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~--~p------ 84 (287)
.|..++-.+.++......|.+..++-.+. .-+...+.+.-+.||....++..|+..++..++ . +|
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 45556677788888999999999987763 345677888899999999999999999999983 2 22
Q ss_pred -------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchh-----hhhcCC-ChhHHHHHHHHHhhhcCCCc--H
Q 023081 85 -------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHG-----EAFNGK-PTKTARSHGKKFQVTVKQET--S 149 (287)
Q Consensus 85 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~-~~~~a~~~~~~~~~~~~~~~--~ 149 (287)
.+- .-.+..+|.+....|+.++|+.+|.......+.- ..+.++ ....-.+-+. ..+... .
T Consensus 104 ~~ffvd~~Dk-EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~----~~~~~~i~~ 178 (242)
T 3kae_A 104 QEMFVDPGDE-EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVR----QTGRRGIEE 178 (242)
T ss_dssp HTTSCCTTCH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---------------CHHH
T ss_pred ceeeeccchH-HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHH----hhhhccchh
Confidence 111 1357789999999999999999999999988732 222121 1000000000 000000 0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH--HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC--NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..+......+..... ...++-...-|.....+ +.+..+..+|-.++....|..+-+.
T Consensus 179 ~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 179 EYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp HHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 111111122221111 33344444456655443 6777788888888888888766554
No 241
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.47 E-value=0.047 Score=44.99 Aligned_cols=102 Identities=9% Similarity=-0.011 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhch----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 57 KDMAVVLKQQDRVDEAVEAIKSFRHLCS----KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 57 ~~la~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
..+|..|...|+|.+|...+.+..+... ......++.....+|...+++.++...+.++.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~------------ 170 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN------------ 170 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc------------
Confidence 3789999999999999999999987533 223446788888999999999999999999876632
Q ss_pred HHHHHHHHhhhcCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q 023081 133 ARSHGKKFQVTVKQE-TSRILGNLGWAYM-QKGNYTSAEVVYRKAQLI 178 (287)
Q Consensus 133 a~~~~~~~~~~~~~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 178 (287)
++..+|. .+.+...-|..+. ..++|.+|...|-+++..
T Consensus 171 --------ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 171 --------AIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp --------HSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred --------cCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 1111111 2445666788888 899999999999998753
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.17 Score=36.38 Aligned_cols=54 Identities=11% Similarity=-0.105 Sum_probs=37.0
Q ss_pred CchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 18 GDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 18 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+++..+.+ .+..|+++.|.+..+.. ++...|..||......|+++-|..+|.++
T Consensus 7 D~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 7 DPHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp CHHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ChHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34444444 34567888887776544 45577888888888888888888877765
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=96.33 E-value=0.079 Score=43.76 Aligned_cols=91 Identities=12% Similarity=0.004 Sum_probs=72.2
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhcCCC--------C--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINAGDR--------V--------------DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC 83 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~~~~--------~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 83 (287)
|......|+.+.|...+.+++.+... . ..+...++..+...|++.+++..+..++..+
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~ 201 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH 201 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33444568999999999999976411 1 1223356778889999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
|-+- .++..+..++...|+..+|+..|+++...
T Consensus 202 P~~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 202 PYRE--PLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9665 67888888999999999999999987664
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.28 Score=41.33 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAE 169 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 169 (287)
.+...++.+|...|++.+|...+.....-... . .....-..++.....++...+++.+|.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~------~--------------~~~~~kve~~l~q~rl~l~~~d~~~a~ 197 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYG------S--------------MEMSEKIQFILEQMELSILKGDYSQAT 197 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS------S--------------SCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh------c--------------ccHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 44567888899999999998888876532100 0 000002566778889999999999999
Q ss_pred HHHHHHHh---hCCCchHH---H--HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 170 VVYRKAQL---IDPDANKA---C--NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 170 ~~~~~al~---~~~~~~~~---~--~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
..++++.. ..+.++.. + ..|..+...++|.+|..+|..+....
T Consensus 198 ~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 198 VLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 99998742 23333322 2 68899999999999999999998764
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.029 Score=47.82 Aligned_cols=78 Identities=6% Similarity=-0.055 Sum_probs=63.2
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYK 100 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 100 (287)
.+..+|.+......+..|..+|.+|+...|+....+..||.+....|+.-+|+-+|.+++......+ .+..++..++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~--~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP--AASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH--HHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh--hHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999987643333 34444444443
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.34 Score=43.82 Aligned_cols=75 Identities=9% Similarity=-0.095 Sum_probs=46.3
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHc
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKC 102 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 102 (287)
..+...+...|.++.|+...+ ++...+ ......|++++|.+..+.. ++. ..|..+|..+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~~-----~~~--~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTDE-----SAE--MKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTTC-----CCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHhh-----CcH--hHHHHHHHHHHHc
Confidence 444455566677777665441 222222 2345678888887765432 222 4677788888888
Q ss_pred CCHHHHHHHHHHH
Q 023081 103 GRLDEQIELLKQK 115 (287)
Q Consensus 103 g~~~~A~~~~~~a 115 (287)
|+++.|..+|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 8888888887775
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.18 Score=36.32 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
++...+.+| ...|+++.|.+..+.. ++. ..|..+|......|+++-|..+|.++-..
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 345555554 4779999999987654 223 57899999999999999999999986554
No 248
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.89 E-value=0.33 Score=37.44 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=52.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccch
Q 023081 62 VLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYH 121 (287)
Q Consensus 62 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 121 (287)
...+.|.+++|++.....++.+|.+. .....+.++++-.|+|++|...++.+.+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da--~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDA--SLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 45678999999999999999999988 78888899999999999999999999999884
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.63 E-value=0.88 Score=41.11 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=42.7
Q ss_pred HHhHHhhCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 26 KHVQLVEKDPEAAIV-LFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 26 g~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
.......+++++|.+ .+ ..-|+ ......++..+...|..++|+...+ +|.. .+ .+....|+
T Consensus 606 ~~~~~~~~~~~~a~~~~l----~~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~-----~~~~---~f-----~~~l~~~~ 667 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVL----PNVEG-KDSLTKIARFLEGQEYYEEALNISP-----DQDQ---KF-----ELALKVGQ 667 (814)
T ss_dssp HHHHHHTTCHHHHHHHTG----GGCCC-HHHHHHHHHHHHHTTCHHHHHHHCC-----CHHH---HH-----HHHHHHTC
T ss_pred HhHHHHhCCHHHHHHHHH----hcCCc-hHHHHHHHHHHHhCCChHHheecCC-----Ccch---he-----ehhhhcCC
Confidence 344566889988876 44 11110 1233677777888899998887553 2321 11 23455699
Q ss_pred HHHHHHHHH
Q 023081 105 LDEQIELLK 113 (287)
Q Consensus 105 ~~~A~~~~~ 113 (287)
+++|.+..+
T Consensus 668 ~~~A~~~~~ 676 (814)
T 3mkq_A 668 LTLARDLLT 676 (814)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999988754
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.077 Score=44.48 Aligned_cols=101 Identities=9% Similarity=0.014 Sum_probs=78.8
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch---h-hhHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAG---DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS---K-QAQESL 91 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~-~~~~~~ 91 (287)
..++..+|..+...|+++.|.+.|.++.... ....+.+..+..++...+++..+..++.++..... + .....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 4577889999999999999999999987643 23367888899999999999999999999966532 1 122234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 92 DNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 92 ~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
....|.++...++|.+|...|..++...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 5556777778899999999998876643
No 251
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.04 Score=46.22 Aligned_cols=108 Identities=15% Similarity=0.003 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCCh
Q 023081 52 VDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-AQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPT 130 (287)
Q Consensus 52 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 130 (287)
...++..+|..|...|++++|.+.|.++....... ....++..+..++...+++..+...+.++-.....+
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~-------- 201 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG-------- 201 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC--------
Confidence 34578899999999999999999999998765422 122577788889999999999999999986553210
Q ss_pred hHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 023081 131 KTARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP 180 (287)
Q Consensus 131 ~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 180 (287)
.+|. ........|..+...++|.+|...|-.++....
T Consensus 202 -------------~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 -------------GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp -------------CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred -------------CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 0000 122334467778889999999999988876443
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.46 Score=39.98 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=76.5
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcC--CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----chhhhHHH
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAG--DR----VDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-----CSKQAQES 90 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 90 (287)
...++.++...|++.+|...+....... .. -.+.+.....+|...+++.+|...+.++... .|......
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4678999999999999999998875321 11 1567888899999999999999999987432 11223335
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
++...|.++...++|.+|-.+|..++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788899999999999999999998875
No 253
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.14 E-value=0.2 Score=42.75 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEV 170 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 170 (287)
....+|++......+..|..+|.+|..+.|. +...++.+|.+....|+.-+|+-
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~--------------------------~G~~~nqLavla~~~~~~l~a~y 207 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS--------------------------NGQPYNQLAILASSKGDHLTTIF 207 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------BSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC--------------------------CCchHHHHHHHHhcccccHHHHH
Confidence 4556777777777777777777777666554 78888999999999999999998
Q ss_pred HHHHHHhhCCCchHHH-HHHHHHH
Q 023081 171 VYRKAQLIDPDANKAC-NLSHCLI 193 (287)
Q Consensus 171 ~~~~al~~~~~~~~~~-~l~~~~~ 193 (287)
+|-+++......+.+. +|...+.
T Consensus 208 ~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 208 YYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChhHHHHHHHHHH
Confidence 8888887655555554 6655554
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.64 E-value=0.8 Score=32.65 Aligned_cols=132 Identities=17% Similarity=-0.012 Sum_probs=86.1
Q ss_pred hhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 31 VEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 31 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
.-.+++.++-+-.- +-|..++....++..++-.|++.+++-.+.. .+. . ...+.-..+|...++|..|+.
T Consensus 14 kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~---lNT--~--Ts~YYk~LCy~klKdYkkA~~ 83 (242)
T 3kae_A 14 RYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK---LNT--C--TSKYYESLCYKKKKDYKKAIK 83 (242)
T ss_dssp HTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT---CCB--H--HHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh---cch--H--HHHHHHHHHHHHHHHHHHHHH
Confidence 44677776543222 2334445677788899999999998876643 222 2 233345568999999999999
Q ss_pred HHHHHHh--c--cchhhhhcCCChhHHHHHHHHHhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Q 023081 111 LLKQKLR--M--IYHGEAFNGKPTKTARSHGKKFQVTVKQETSR-ILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKA 185 (287)
Q Consensus 111 ~~~~al~--~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 185 (287)
.++..++ . +|+.++- ++ ..-.+|.+.+ .+..+|.++...|+-++|+.++.......|-.+..
T Consensus 84 ~le~il~~kvd~d~~~d~~-----------~~--~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 84 SLESILEGKVERDPDVDAR-----------IQ--EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHH-----------HH--TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhcccccCcccccc-----------cc--eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 9999994 2 2321100 00 1123455544 45668999999999999999999998888766544
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.39 E-value=1.7 Score=41.27 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=69.5
Q ss_pred hhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHHcCC
Q 023081 12 VHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAG-----------------------DRVDSALKDMAVVLKQQDR 68 (287)
Q Consensus 12 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------------~~~~~~~~~la~~~~~~g~ 68 (287)
+.-.|.++-..|.+|++++..|++++|..+|+++...- ...+..|..+..++.+.|.
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 34456676677888889888999999988887763110 0113445667778888888
Q ss_pred HHHHHHHHHHHHHhchh---hhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 69 VDEAVEAIKSFRHLCSK---QAQESLDNVLIDLYKKCGRLDEQIELLK 113 (287)
Q Consensus 69 ~~~A~~~~~~~~~~~p~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 113 (287)
++.+++..+.+++..+. +....++..+-..+...|+|++|...+.
T Consensus 915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 88888888888876432 1122356666666777788888877664
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.00 E-value=1.8 Score=34.30 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----chhhhHHHHHHHHHHHHHHcCCH--H
Q 023081 35 PEAAIVLFWKAINAGDRV--DSALKDMAVVLKQQDRVDEAVEAIKSFRHL----CSKQAQESLDNVLIDLYKKCGRL--D 106 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~~~l~~~~~~~g~~--~ 106 (287)
.++-+.-++..++.+.-. -+.+..++.=|.+.+++++|++.+...... .....-..+...+.++|.+.+.. +
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~ 92 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD 92 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH
Confidence 444444455544443221 122334555667778899999887666433 11222224555666777766543 4
Q ss_pred HHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023081 107 EQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTV---KQETSRILGNLGWAYMQKGNYTSAEVVYR 173 (287)
Q Consensus 107 ~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 173 (287)
+.+.-+.+.+...|...... .+-....+++ .... .-.++..+..+|..|++.|++.+|..+|-
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r---~~fi~~ai~W-S~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNL---KDVITGMNNW-SIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTH---HHHHHHHHHH-HHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchH---HHHHHHHHHH-HhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 44555555555544211110 1111122222 2222 23489999999999999999999999884
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.90 E-value=1.4 Score=41.99 Aligned_cols=126 Identities=12% Similarity=-0.006 Sum_probs=85.6
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---ch----------------
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL---CS---------------- 84 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p---------------- 84 (287)
.+.......+.++-+.++ +...|.++...+.+|.++...|++++|..+|+++..- ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 344555666777655443 3445677777899999999999999999999887311 00
Q ss_pred --hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHH
Q 023081 85 --KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQE-TSRILGNLGWAYMQ 161 (287)
Q Consensus 85 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~ 161 (287)
......++..+..++.+.+.++-+++..+.|++..+.. +++ ....|.++-..+..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~----------------------~~~~~~~l~~~iFk~~L~ 950 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD----------------------DEDLSIAITHETLKTACA 950 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC----------------------CHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC----------------------ChhhHHHHHHHHHHHHHh
Confidence 00112456677778888888888888888887653310 000 12367778888899
Q ss_pred cCCHHHHHHHHHHH
Q 023081 162 KGNYTSAEVVYRKA 175 (287)
Q Consensus 162 ~g~~~~A~~~~~~a 175 (287)
.|+|++|...+-..
T Consensus 951 l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 951 AGKFDAAHVALMVL 964 (1139)
T ss_dssp HCCSGGGGHHHHHH
T ss_pred hCCHHHHHHHHHhC
Confidence 99999998777543
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.17 Score=43.03 Aligned_cols=131 Identities=13% Similarity=0.100 Sum_probs=59.6
Q ss_pred HhhCCHHHHHHHHHHHHh------c-----CCCCHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHh-----c
Q 023081 30 LVEKDPEAAIVLFWKAIN------A-----GDRVDSALKDMAVVLKQQDRVDEAVE----------AIKSFRHL-----C 83 (287)
Q Consensus 30 ~~~~~~~~A~~~~~~al~------~-----~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~~~~~-----~ 83 (287)
+..+++++|..+-...+. . ++-.+.+|+.++.++...|+...... .+..+++. +
T Consensus 147 ~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D 226 (523)
T 4b4t_S 147 WDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHD 226 (523)
T ss_dssp --------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccC
Confidence 456788888887765541 1 12235567777777777776654322 22222221 2
Q ss_pred hhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcC
Q 023081 84 SKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKG 163 (287)
Q Consensus 84 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 163 (287)
+ .....+++.+...|...+.|+.|..+..++. .|... ..++.....++.+|.++.-++
T Consensus 227 ~-~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-------------------~sn~q~~rY~YY~GRI~a~q~ 284 (523)
T 4b4t_S 227 N-ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-------------------VSSSLEARYFFYLSKINAIQL 284 (523)
T ss_dssp S-CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-------------------SCHHHHHHHHHHHHHHHHHTT
T ss_pred c-chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-------------------CCHHHHHHHHHHHHHHHHHhc
Confidence 2 1233678889999999999999999998874 33200 001112556788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCc
Q 023081 164 NYTSAEVVYRKAQLIDPDA 182 (287)
Q Consensus 164 ~~~~A~~~~~~al~~~~~~ 182 (287)
+|.+|.+++..|+...|.+
T Consensus 285 ~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 285 DYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHTSSCSCS
T ss_pred cHHHHHHHHHHHHHhCCcc
Confidence 9999999999999887754
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.94 E-value=0.89 Score=38.74 Aligned_cols=145 Identities=16% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHcCCHHHHHHHHHHHHH--h-ch------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccchhhhhcCCChhH
Q 023081 62 VLKQQDRVDEAVEAIKSFRH--L-CS------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKT 132 (287)
Q Consensus 62 ~~~~~g~~~~A~~~~~~~~~--~-~p------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 132 (287)
.+...+++++|..+-...+. . .. +.....+|+.++.++...|+.............+.+.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~----------- 213 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRST----------- 213 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTH-----------
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHH-----------
Confidence 34567788888887765541 1 11 1111244555555666666655544333333332221
Q ss_pred HHHHHHHHhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchH-H-H--HHHHHHHhccCHHHHHHHH
Q 023081 133 ARSHGKKFQVTVKQE-TSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP--DANK-A-C--NLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 133 a~~~~~~~~~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~-~-~--~l~~~~~~~g~~~~A~~~~ 205 (287)
-...++...+..+++ ...+++.+-..|...+.+++|..+..++.-... .+.. . + .+|.++.-+++|.+|..++
T Consensus 214 Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L 293 (523)
T 4b4t_S 214 MMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYI 293 (523)
T ss_dssp HHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 011111112333333 366788888999999999999999999852111 1222 1 2 7899999999999999999
Q ss_pred HHHHhcccCCCC
Q 023081 206 EDVLLGKLSGST 217 (287)
Q Consensus 206 ~~~l~~~~~~~~ 217 (287)
..|+...+.+..
T Consensus 294 ~~A~rkap~~~~ 305 (523)
T 4b4t_S 294 IAAIRKAPHNSK 305 (523)
T ss_dssp HHHTSSCSCSSS
T ss_pred HHHHHhCCcchh
Confidence 999987544433
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.58 E-value=3.3 Score=33.13 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhcCCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----hhhhHHHHHHHHHHHHHHcC
Q 023081 33 KDPEAAIVLFWKAINAGDR---V--DSALKDMAVVLKQQDRVDEAVEAIKSFRHLC----SKQAQESLDNVLIDLYKKCG 103 (287)
Q Consensus 33 ~~~~~A~~~~~~al~~~~~---~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~~~l~~~~~~~g 103 (287)
+..++-+.-++..++...- . -+.+..++.=|...+++++|++.+......- ....-..+...+.++|.+.+
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~ 89 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAG 89 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC
Confidence 3445555555555554432 1 1223345566788899999999876654331 12222245666667777765
Q ss_pred C--HHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 023081 104 R--LDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVY 172 (287)
Q Consensus 104 ~--~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 172 (287)
- -++...-+.+.+...|............+...-.++ -...-.++..+..+|..|++.+++.+|..+|
T Consensus 90 ~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 90 QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3 234444455555555432211111112222221110 0112348999999999999999999998887
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.54 E-value=4.7 Score=35.46 Aligned_cols=159 Identities=12% Similarity=-0.002 Sum_probs=96.2
Q ss_pred HhHHhHHhhCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 24 RAKHVQLVEKDPEAAIVLFWKAINAGDRVDS----ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 24 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
..+.......+.+.|...+........-... .+..+|.-....+...++...+.+.....+++. .....+...
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~~~r~A 295 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS---LIERRVRMA 295 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH---HHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH---HHHHHHHHH
Confidence 3455556667888898888776543322222 222333333444535567777776554433332 222222334
Q ss_pred HHcCCHHHHHHHHHHHHhccchhhhhcCCChhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 023081 100 KKCGRLDEQIELLKQKLRMIYHGEAFNGKPTKTARSHGKKFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKAQLID 179 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 179 (287)
...|+++.|...|..+-.... ..+...+-+|.++...|+.++|..+|+++....
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~--------------------------~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~ 349 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAK--------------------------EKDEWRYWQADLLLERGREAEAKEILHQLMQQR 349 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGG--------------------------GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHCCCHHHHHHHHHHcccccc--------------------------ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC
Confidence 456999999998875433211 146667888999999999999999998876510
Q ss_pred -----------------------CCc-h-----HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 180 -----------------------PDA-N-----KACNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 180 -----------------------~~~-~-----~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
+.. . .....+..+...|....|...+..++..
T Consensus 350 ~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 350 GFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp SHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 000 0 0113456678889988888888877754
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.55 E-value=4.6 Score=35.48 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=41.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 158 AYMQKGNYTSAEVVYRKAQLIDPDANK-ACNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 158 ~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
...+.|++..|..+|..+-........ .+.+|.++..+|+.++|..+|+.+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345679999999999876442222233 35899999999999999999999875
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=89.34 E-value=3.1 Score=30.55 Aligned_cols=79 Identities=9% Similarity=-0.063 Sum_probs=57.8
Q ss_pred HHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHH
Q 023081 40 VLFWKAINA---------GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIE 110 (287)
Q Consensus 40 ~~~~~al~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~ 110 (287)
..+++++.. +|.....|...+..+ ..+...++..+|.-+....-......+|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 466666642 233456677777765 2344778888888887665433333688999999999999999999
Q ss_pred HHHHHHhcc
Q 023081 111 LLKQKLRMI 119 (287)
Q Consensus 111 ~~~~al~~~ 119 (287)
+|+.+++..
T Consensus 137 Vy~~GI~~~ 145 (202)
T 3esl_A 137 LLELGAENN 145 (202)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999875
No 264
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.19 E-value=21 Score=33.15 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=102.2
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVD--SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLID 97 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~ 97 (287)
.+-+.+|.++...++ +++.+.+...+..+.... .+-..+|.++.-.|+-+-....+..+.+-..+.. .....+|.
T Consensus 456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~v--rR~aalgL 532 (963)
T 4ady_A 456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNI--TRGLAVGL 532 (963)
T ss_dssp HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHH--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHH--HHHHHHHH
Confidence 466788888887776 456777777776443222 3455677777778887666666655554333333 22233333
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc-c---------hhhhhcCCChhHHHH-HHHHHhhhcCCCcHHHHHHHHHHHHHcCCHH
Q 023081 98 LYKKCGRLDEQIELLKQKLRMI-Y---------HGEAFNGKPTKTARS-HGKKFQVTVKQETSRILGNLGWAYMQKGNYT 166 (287)
Q Consensus 98 ~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 166 (287)
.+...|+.+.+-...+...... | .+.+|.|.....+.+ .+.. ......++..-.-.+|......|+.+
T Consensus 533 Gll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~-~~~d~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 533 ALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHV-AVSDSNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHTSSSCS
T ss_pred HhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-hccCCcHHHHHHHHHHHHhhccCCHH
Confidence 3345577766666666554422 2 122333433333333 3332 22111112222233444444556655
Q ss_pred HHHHHHHHHHhhCCCchHHH----HHHHHHHhccCHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHhcccc
Q 023081 167 SAEVVYRKAQLIDPDANKAC----NLSHCLIKQARYTEARSVLEDVLLGKLSGSTETKTINRVKELLQELEPW 235 (287)
Q Consensus 167 ~A~~~~~~al~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 235 (287)
.+...+..... ..+....+ .||.+....++ .+++..+...... .+..+...|...|..++..
T Consensus 612 ~v~rlv~~L~~-~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 612 TVPRIVQLLSK-SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SHHHHTTTGGG-CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcC
Confidence 44444433222 22221112 44544433443 6778777777642 3334444555566666543
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=82.20 E-value=21 Score=33.30 Aligned_cols=92 Identities=11% Similarity=-0.046 Sum_probs=64.7
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-c-----------------h
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-C-----------------S 84 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-----------------p 84 (287)
..+.......|.++-|.+ .+..-|.++..-+.+|.+|...|++++|..+|+++-.- . |
T Consensus 814 ~~l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 814 TELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 335555666777765433 44566777778899999999999999999999887321 0 0
Q ss_pred ---hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 85 ---KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 85 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+.....+|..++.++...+-++-++...+.|++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0012246677788888888888888888888765
No 266
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=81.09 E-value=3.8 Score=30.23 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=24.3
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV 52 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 52 (287)
.-.|++|+.+..+++|.+|.+.+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345777888777788888888887777776654
No 267
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=78.24 E-value=9.5 Score=26.68 Aligned_cols=84 Identities=8% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhchhhhHHHHHHHHHHHH
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDR--VDSALKDMAVVLKQQDRVD-EAVEAIKSFRHLCSKQAQESLDNVLIDLY 99 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~~~l~~~~ 99 (287)
+.-+...+...+|...+..++. .+|. .....+.||..|.....+. +..+.+...+.+..+..+...|..+|.
T Consensus 12 ~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL~YWIyiGR-- 86 (161)
T 2ynq_A 12 YIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYMLYWIYIGR-- 86 (161)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHHHHHHHHcC--
Confidence 3456667888999998888754 3333 2567899999999887654 444555544444433333356665555
Q ss_pred HHcCCHHHHHHHHHH
Q 023081 100 KKCGRLDEQIELLKQ 114 (287)
Q Consensus 100 ~~~g~~~~A~~~~~~ 114 (287)
|++++|+..-..
T Consensus 87 ---g~~~eAlDiA~~ 98 (161)
T 2ynq_A 87 ---SQSEEALELART 98 (161)
T ss_dssp ---TCHHHHHHHHHH
T ss_pred ---CchHHHHHHHHh
Confidence 999999987654
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=77.67 E-value=8.5 Score=22.98 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+|..+...|++++|..+|-+++..+|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666666553
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.31 E-value=13 Score=34.54 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=54.8
Q ss_pred HhhcCCCCchHHHHhHHhHHhhCCHHHHHHHHHHHHhc-CCC----------------------CHHHHHHHHHHHHHcC
Q 023081 11 VVHKLPPGDSPYVRAKHVQLVEKDPEAAIVLFWKAINA-GDR----------------------VDSALKDMAVVLKQQD 67 (287)
Q Consensus 11 ~l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~----------------------~~~~~~~la~~~~~~g 67 (287)
++.-.|.++-.-|.+|++++..|++++|..+|++|-.. .+. ....|..++.++...+
T Consensus 832 L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~ 911 (950)
T 4gq2_M 832 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 911 (950)
T ss_dssp HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcC
Confidence 45567778777899999999999999999999986421 110 0224566778888888
Q ss_pred CHHHHHHHHHHHHHh
Q 023081 68 RVDEAVEAIKSFRHL 82 (287)
Q Consensus 68 ~~~~A~~~~~~~~~~ 82 (287)
-++-++...+.+++.
T Consensus 912 a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 912 AYIDALEFSLLADAS 926 (950)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhh
Confidence 888888888888865
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.08 E-value=8.3 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.076 Sum_probs=13.5
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCCCC
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGDRV 52 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~~~ 52 (287)
+|..+...|++++|+.+|-+|+...|..
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 4444444555555555444555444433
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=73.05 E-value=20 Score=24.67 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 63 LKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 63 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
+...|.-++--+.+...+.-.+.++ .+...++..|.+.|+..+|.+++.+|-+.
T Consensus 101 lv~~~KkDqLdki~~~~l~n~~~~~--~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 101 LVIQGKRDKLEEIGREILKNNEVSA--SILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHTTCHHHHHHHHHHHC--CCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhccHhHHHHHHHHHhccCCCCh--HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444555554444444333332223 45555556666666666666665555543
No 272
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=72.53 E-value=4.5 Score=24.55 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=16.1
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAIN 47 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~ 47 (287)
..+|+-+...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566666666777777777666553
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.47 E-value=4.8 Score=28.47 Aligned_cols=61 Identities=2% Similarity=0.010 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
..+|..++... ++ +.++|..+....-......+|...|..+...|++.+|.++|+.+++..
T Consensus 66 LklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 66 LNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55666666653 33 566777766554333333688899999999999999999999999875
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=71.55 E-value=24 Score=24.85 Aligned_cols=63 Identities=10% Similarity=-0.053 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhh-----hHH-HHH-HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 56 LKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ-----AQE-SLD-NVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 56 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~-~~~-~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
-+.-+..++..|+|=+|.+.++......+.. .+. -+. ...|..+...|+...|..++.+++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445666777799999999999997764321 111 123 34455667889999999999999875
No 275
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.51 E-value=69 Score=29.81 Aligned_cols=55 Identities=11% Similarity=0.134 Sum_probs=24.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCchHH----HHHHHHHHhccCHHHHHHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQLIDPDANKA----CNLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
+|..+...|+.+.+....+.... ..+.... +.+|.+|...|+...-...+..+.+
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~-~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLA-SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 34444455665555555444332 2222111 1455566666664433335554443
No 276
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=70.47 E-value=11 Score=23.53 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 55 ALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 55 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.+...+..+...|+|++|+++.+++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344556666666777777666666543
No 277
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.31 E-value=13 Score=23.50 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSK 85 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 85 (287)
.+|..+...|+++.|+.+|-+++..+|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 5677777777777777777777777664
No 278
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.81 E-value=14 Score=31.08 Aligned_cols=88 Identities=8% Similarity=0.044 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhcC--CCC----------H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------chhhhHH
Q 023081 34 DPEAAIVLFWKAINAG--DRV----------D----SALKDMAVVLKQQDRVDEAVEAIKSFRHL--------CSKQAQE 89 (287)
Q Consensus 34 ~~~~A~~~~~~al~~~--~~~----------~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~ 89 (287)
..+++...+.+++..- +.+ - .....+-.+|++.|+..-+...+...-.. .|.....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4566777777777542 111 1 12234557899999998888877655332 2333445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cch
Q 023081 90 SLDNVLIDLYKKCGRLDEQIELLKQKLRM-IYH 121 (287)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~ 121 (287)
...+.+|.++...++|.+|.+.+..|+.. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 67889999999999999999999999998 663
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=66.47 E-value=14 Score=22.78 Aligned_cols=27 Identities=4% Similarity=-0.001 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 93 NVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 93 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
...|.-.-..|+|++|+.+|..+++..
T Consensus 20 v~~Ave~D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 20 LKRAVELDSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444456688888888888888763
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=63.95 E-value=16 Score=22.85 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+..+...+..+...|+|++|+++.+++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45566788889999999999888877653
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=62.72 E-value=12 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=24.7
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV 52 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 52 (287)
+.+|..+...|+++.|+.+|-+|+...|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 568888899999999999888888776544
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=62.53 E-value=37 Score=23.83 Aligned_cols=62 Identities=8% Similarity=-0.158 Sum_probs=47.1
Q ss_pred HHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC------HHHHHH-HH--HHHHHcCCHHHHHHHHHHHHHh
Q 023081 21 PYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV------DSALKD-MA--VVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 21 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~-la--~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.-+..|..++..|+|-+|=+.++.+....+.. ...+.. +| ..+.+.|+...|...+.+++..
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34667888888999999999999998776544 233444 43 3446679999999999999774
No 283
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=61.49 E-value=26 Score=25.71 Aligned_cols=34 Identities=9% Similarity=-0.044 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
+...+.+|..+...++|.+|.+.+..++...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 3457778888888888888888888888887754
No 284
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=60.84 E-value=25 Score=28.39 Aligned_cols=42 Identities=19% Similarity=0.107 Sum_probs=20.6
Q ss_pred HHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 38 AIVLFWKAINAG-----DRVDSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 38 A~~~~~~al~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
++.+|.+++... ..++..+..+|..+++.+++.+|+..+-.+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~A 322 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDA 322 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHH
Confidence 445555554321 223444555555555555555555555444
No 285
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.94 E-value=41 Score=23.39 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
...|...+... +++..+|.-+....-....+.++...|..+...|++.+|.++|+.+++..
T Consensus 71 LklWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 71 ISYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555432 33777777776654433333688899999999999999999999999874
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=58.92 E-value=50 Score=24.16 Aligned_cols=66 Identities=14% Similarity=0.020 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CchHHH-HHHHHHHhccCHHHHHHHHHHHHhcc
Q 023081 146 QETSRILGNLGWAYMQKGNYTSAEVVYRKAQLIDP--DANKAC-NLSHCLIKQARYTEARSVLEDVLLGK 212 (287)
Q Consensus 146 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~ 212 (287)
|....+|...+..+ ..+...++...|.-.....- .....+ ..|..+...|++.+|..+|+.+++..
T Consensus 77 ~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 77 PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33456677776654 24446788888888776544 445555 78999999999999999999999873
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.34 E-value=46 Score=23.47 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHH-HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQLID--PDANKAC-NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
...+|..++... +.+...|..+.... ......+ ..|..+...|++.+|..+|+.+++.
T Consensus 65 yLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 65 FLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455566655542 33666666665543 3344455 7888888899999999999999886
No 288
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=56.80 E-value=78 Score=25.69 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCC-----CchHHH-HHHHHHHhccCHHHHHHHHHHHH---hcccCCCCchhHHHHHHHHHHhc
Q 023081 168 AEVVYRKAQLIDP-----DANKAC-NLSHCLIKQARYTEARSVLEDVL---LGKLSGSTETKTINRVKELLQEL 232 (287)
Q Consensus 168 A~~~~~~al~~~~-----~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~l 232 (287)
++..|.+++.... .+.-.+ .+|-.+.+.+++.+|+..+..+- ..+....++...|....+....+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 6777777776322 222223 78899999999999999997654 44455667766666655554443
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.71 E-value=35 Score=25.46 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRMI 119 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 119 (287)
...|..++.. .+.+..+|.-+....-......+|...|..+...|++.+|..+|+.+++..
T Consensus 120 LklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 120 LRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4455555542 245666777766554433333688899999999999999999999999864
No 290
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=55.66 E-value=14 Score=22.34 Aligned_cols=26 Identities=35% Similarity=0.343 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...+|.=|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34577778888888888888888776
No 291
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.67 E-value=19 Score=22.02 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.++|+.+..+|++. -..|++++|+.+|..+++.
T Consensus 16 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKA---------------DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHH
Confidence 45666666666543 2456666666666655543
No 292
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=54.32 E-value=22 Score=31.59 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=21.0
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQ 66 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 66 (287)
...|+..+..|+|.-|.+....++..+|++..+...++.+|.++
T Consensus 453 ~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l 496 (658)
T 2cfu_A 453 LEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQL 496 (658)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555544444444444433
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.51 E-value=28 Score=21.24 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 153 GNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 153 ~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
...|.-.-..|++++|+.+|..+++
T Consensus 23 v~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 23 AINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344555566666666666665544
No 294
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.95 E-value=46 Score=21.86 Aligned_cols=14 Identities=7% Similarity=-0.128 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 023081 69 VDEAVEAIKSFRHL 82 (287)
Q Consensus 69 ~~~A~~~~~~~~~~ 82 (287)
+++|..++.+++..
T Consensus 19 h~~AF~~Is~AL~~ 32 (116)
T 2dl1_A 19 YKKAFLFVNKGLNT 32 (116)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 34444444444444
No 295
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=52.26 E-value=1e+02 Score=25.61 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhCC-----CchHHH-HHHHHHHhccCHHHHHHHHHHHH---hcccCCCCchhHHHHHHHHHHh
Q 023081 167 SAEVVYRKAQLIDP-----DANKAC-NLSHCLIKQARYTEARSVLEDVL---LGKLSGSTETKTINRVKELLQE 231 (287)
Q Consensus 167 ~A~~~~~~al~~~~-----~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~~~~l~~ 231 (287)
.++..|.+++.... .+.-.+ .+|-.+.+.+++.+|+..+..+- ..+....++...|.+..+....
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAne 370 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVAND 370 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 35666666665321 122223 78999999999999999997654 4445566777666655544433
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.81 E-value=22 Score=21.67 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 36 EAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 36 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+.|+.+..+|++.+ ..|++++|+.+|..+++.
T Consensus 9 ~~Ai~lv~~Ave~D---------------~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 9 DMARKYAILAVKAD---------------KEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHHH
Confidence 46777777765542 456666666666665543
No 297
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=50.13 E-value=45 Score=27.58 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSF 79 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 79 (287)
+..+..+|..+++.+++.+|+..+-.+
T Consensus 318 vYPYtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 318 IYPYMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccceeecchhhhhcchHHHHHHHHHHH
Confidence 344444455555555555555544444
No 298
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.13 E-value=1e+02 Score=25.14 Aligned_cols=91 Identities=9% Similarity=-0.028 Sum_probs=64.3
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch-----
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAG-----------------DRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS----- 84 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p----- 84 (287)
.+.....+.++|++++++....- .....+...++..|...|+.++|..+++++-..-.
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34455678999999998763211 11234566788999999999999999999864311
Q ss_pred h-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 85 K-QAQESLDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 85 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
+ .....++...+..|...+++..+...+-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1 12335677788888899999888777666665
No 299
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.43 E-value=33 Score=22.52 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcccCCC-CchhHHHHHHHHHHhccc
Q 023081 200 EARSVLEDVLLGKLSGS-TETKTINRVKELLQELEP 234 (287)
Q Consensus 200 ~A~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~ 234 (287)
+++..+++++.....++ .....+.++..+-.++..
T Consensus 47 ~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 47 QGIGHLLRGISISSKESEHTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence 34444455555543322 223444566655555544
No 300
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=49.41 E-value=36 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al 176 (287)
.|.-.-..|++++|+.+|..++
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3344445555555555554443
No 301
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=46.93 E-value=41 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 152 LGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 152 ~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
+...|.-.-..|++++|+.+|..+++
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33445555677777777777776664
No 302
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=46.08 E-value=1.3e+02 Score=25.01 Aligned_cols=87 Identities=15% Similarity=0.067 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCC----C-chHHH-HHHHHHHhccCHHHHHHHHHHHH---hcccCCC
Q 023081 148 TSRILGNLGWAYMQKG--NYTSAEVVYRKAQLIDP----D-ANKAC-NLSHCLIKQARYTEARSVLEDVL---LGKLSGS 216 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~----~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~l---~~~~~~~ 216 (287)
.|-++.+||.+-.-.- ....++..|.+++.... + +.-.+ .+|-.+.+.+++.+|+..+..+- ..+..+.
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 3555555665543221 22346778888776322 1 22223 68999999999999999997654 4556667
Q ss_pred CchhHHHHHHHHHHhccc
Q 023081 217 TETKTINRVKELLQELEP 234 (287)
Q Consensus 217 ~~~~~~~~~~~~l~~l~~ 234 (287)
++...|.+..+....+-+
T Consensus 341 eDeEiYke~~eIanelip 358 (489)
T 4gq4_A 341 EDEEIYKEFFEVANDVIP 358 (489)
T ss_dssp TCHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHHHHHHHHhhh
Confidence 777777776665555443
No 303
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=46.03 E-value=36 Score=28.58 Aligned_cols=62 Identities=6% Similarity=-0.068 Sum_probs=48.2
Q ss_pred hHHhHHhhCCHHHHHHHHHHHHhcCC--C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-chhh
Q 023081 25 AKHVQLVEKDPEAAIVLFWKAINAGD--R--------VDSALKDMAVVLKQQDRVDEAVEAIKSFRHL-CSKQ 86 (287)
Q Consensus 25 lg~~~~~~~~~~~A~~~~~~al~~~~--~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 86 (287)
+-++|+..++..-+...+...-...+ . .+...+.+|..+...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 44778889999988888854433222 1 1456888999999999999999999999998 7753
No 304
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.59 E-value=1.2e+02 Score=24.69 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhch---------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCS---------------KQAQESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..+.....+.++|++++++.....- ..+...+...++..|...|+.++|...++++-..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~ 156 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKT 156 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4456677899999999987743210 0122245667888999999999999999888654
No 305
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=44.93 E-value=55 Score=20.49 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhhh---H-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 023081 58 DMAVVLKQQDRVDEAVEAIKSFRHLCSKQA---Q-ESLDNVLIDLYKKCGRLDEQIELLKQKLRM 118 (287)
Q Consensus 58 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 118 (287)
..|..++..|+|=+|.+.++......|+.. + .-+....|..+...|+. |...+.+++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 345667777999999999999987765421 1 11233445555677888 88889988774
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.59 E-value=76 Score=22.00 Aligned_cols=48 Identities=15% Similarity=0.005 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 37 AAIVLFWKAINA--GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 37 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
++.+.|..+... +...+..|...|..+...|++.+|.++|+..++...
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 367777666643 455677888899999999999999999999998753
No 307
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=41.87 E-value=1.1e+02 Score=23.17 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=33.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLK 64 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 64 (287)
+-+.+++++..+.++|++.+.+.+++...++.- .+-...+..+|.
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYK 50 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYK 50 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHH
Confidence 345678889999999999999998888877553 455666666663
No 308
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=41.29 E-value=65 Score=26.68 Aligned_cols=27 Identities=7% Similarity=-0.037 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 91 LDNVLIDLYKKCGRLDEQIELLKQKLR 117 (287)
Q Consensus 91 ~~~~l~~~~~~~g~~~~A~~~~~~al~ 117 (287)
-+..+|-.+.+.+++.+|+..+-.+-.
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 355556666666777777766666654
No 309
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=41.03 E-value=40 Score=21.06 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
.+.|+.++.+|++.+ ..|++++|+.+|..+++
T Consensus 12 l~~Ai~lv~~Ave~D---------------~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 12 STAAVAVLKRAVELD---------------AESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHH---------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HhCCHHHHHHHHHHHHH
Confidence 345666666665432 33555555555555544
No 310
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.47 E-value=57 Score=19.80 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|.-.-..|++++|+.+|..+++
T Consensus 19 ~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 19 KAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444556666666666666554
No 311
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=38.40 E-value=1.3e+02 Score=22.99 Aligned_cols=58 Identities=9% Similarity=-0.013 Sum_probs=40.2
Q ss_pred chHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHH
Q 023081 19 DSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQ-QDRVDEAVEAI 76 (287)
Q Consensus 19 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~ 76 (287)
-+-..+++++..+.++|++.+.+.+++...++.- .+-...+..+|.. .|....+...+
T Consensus 31 re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRii 90 (261)
T 3ubw_A 31 REDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRII 90 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHH
Confidence 4566788999999999999999999998877653 4556666666643 23333344433
No 312
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=38.21 E-value=88 Score=20.89 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=9.3
Q ss_pred HhHHhhCCHHHHHHHHHHH
Q 023081 27 HVQLVEKDPEAAIVLFWKA 45 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~a 45 (287)
+.++..++.+..+..++..
T Consensus 48 rlyf~~~n~~~m~~~L~pL 66 (126)
T 2npu_A 48 RLYFGERNVKGMFEVLEPL 66 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcccCHHHHHHHHHHH
Confidence 3444555555555555433
No 313
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=37.20 E-value=1.3e+02 Score=22.58 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=34.0
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLK 64 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~ 64 (287)
+-..+++++..+.++|++.+.+..++...++.- .+-...+..+|.
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayK 51 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYK 51 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 445678888899999999999999998877543 455666666664
No 314
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=36.99 E-value=42 Score=22.05 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 35 PEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.+.|+.++.+|+.. -..|++++|+.+|..+++.
T Consensus 15 l~kAi~lv~~Ave~---------------D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQE---------------DKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHH---------------HHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHccCHHHHHHHHHHHHHH
Confidence 45677777776533 2346666666666666553
No 315
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=36.84 E-value=77 Score=19.81 Aligned_cols=58 Identities=3% Similarity=-0.185 Sum_probs=41.8
Q ss_pred HHhHHhHHhhCCHHHHHHHHHHHHhcCCCC----HHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q 023081 23 VRAKHVQLVEKDPEAAIVLFWKAINAGDRV----DSALKDMAV--VLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 23 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~la~--~~~~~g~~~~A~~~~~~~~~~ 82 (287)
+..|..++..|+|-+|=+.++......|.. ...+..+|. .....|+. |...+.+++..
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 456777888899999999999998877543 223334443 44567887 88889888764
No 316
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=35.34 E-value=83 Score=19.74 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHhHHhhCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 26 KHVQLVEKDPEAAIVLFWKAINA---GDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 26 g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
.+.++..++.+..+..+....+. .|.. ....+.....-.+..+|.+.+++....
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT---~~E~sF~~~fG~~L~~A~~~~~~y~~t 73 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMKS 73 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777766666655433 4544 222222222223456666666665444
No 317
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=34.31 E-value=67 Score=21.09 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=13.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Q 023081 155 LGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 155 lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
.|.-.-..|+|++|+.+|..+++
T Consensus 24 ~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 24 KAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444556667666666666654
No 318
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=33.41 E-value=1.5e+02 Score=22.25 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=39.1
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRV-DSALKDMAVVLKQ-QDRVDEAVEAI 76 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~ 76 (287)
+-..+++++..+.++|++.+.+.+++...++.- .+-...+..+|.. .|....+...+
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRii 67 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVL 67 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 456788899999999999999999988877653 4556666666633 23333344433
No 319
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.39 E-value=83 Score=27.88 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCC
Q 023081 54 SALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGR 104 (287)
Q Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~ 104 (287)
......|......|+|.-|.+....++..+|++. .+...++++|.+.|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~--~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNR--AARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHH
Confidence 3455677788889999999999999999999887 677777777766653
No 320
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.86 E-value=1.4e+02 Score=24.80 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=17.9
Q ss_pred HHHHHHHhcc--CHHHHHHHHHHHHhc
Q 023081 187 NLSHCLIKQA--RYTEARSVLEDVLLG 211 (287)
Q Consensus 187 ~l~~~~~~~g--~~~~A~~~~~~~l~~ 211 (287)
..|+++.++| +..+|...+.++.+.
T Consensus 340 i~AEA~~~~gg~~~~~A~~~lN~vR~R 366 (454)
T 3myv_A 340 IAAEAGCKLGGDAAVQGLGYLNEIVKR 366 (454)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5677777777 777788777766653
No 321
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=31.10 E-value=1.3e+02 Score=20.75 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=41.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 157 WAYMQKGNYTSAEVVYRKAQLIDPDANKA-CNLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..+..+|+-++-.+.+...+.-.+-.+.. ..+|.+|.+.|+..+|.+.+.+|-+.
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34567888888888888766544444555 48999999999999999999998876
No 322
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.18 E-value=1.8e+02 Score=22.19 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=32.6
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAG---DR-VDSALKDMAVVLKQ 65 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~-~~~~~~~la~~~~~ 65 (287)
+-..+++++..+.++|++.+.+..++...+ +. ..+-...+..+|..
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKN 78 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKN 78 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 445678888888899999999998888866 33 34556666666643
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.89 E-value=1.8e+02 Score=21.62 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Q 023081 35 PEAAIVLFWKAINAGDRVDS--------ALKDMAVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKK 101 (287)
Q Consensus 35 ~~~A~~~~~~al~~~~~~~~--------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 101 (287)
.+.|+..++..-...+-... .-.....++.+.|.+++|.+.+++....+|.+. .+...|..+-.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~--kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQ--KLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCch--HHHHHHHHHHhc
Confidence 45677776655444432211 111334567788889999999988888766543 355555544333
No 324
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=28.41 E-value=1.6e+02 Score=24.50 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=19.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhc
Q 023081 187 NLSHCLIKQARYTEARSVLEDVLLG 211 (287)
Q Consensus 187 ~l~~~~~~~g~~~~A~~~~~~~l~~ 211 (287)
..|.++.++|+..+|...+.++.+.
T Consensus 343 i~AEA~~~~g~~~~A~~~lN~vR~R 367 (461)
T 3kez_A 343 NAAEAAVQTGDNAKAVKYLNSIVQR 367 (461)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHh
Confidence 5678888888888888888776653
No 325
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=27.73 E-value=1.8e+02 Score=24.42 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=18.7
Q ss_pred HHHHHHHhccCH-HHHHHHHHHHHh
Q 023081 187 NLSHCLIKQARY-TEARSVLEDVLL 210 (287)
Q Consensus 187 ~l~~~~~~~g~~-~~A~~~~~~~l~ 210 (287)
..|.++.++|+. .+|+..+.++.+
T Consensus 362 i~AEA~~~~g~~~~~A~~~lN~vR~ 386 (477)
T 3mcx_A 362 NAAEAGLKKGTDIEEAQGYLNDIIS 386 (477)
T ss_dssp HHHHHHHHHTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Confidence 567777788887 788888887776
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.12 E-value=64 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhh
Q 023081 59 MAVVLKQQDRVDEAVEAIKSFRHLCSKQ 86 (287)
Q Consensus 59 la~~~~~~g~~~~A~~~~~~~~~~~p~~ 86 (287)
...++.+.|.+++|.+.+++....++.+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 3456777888888888888877666544
No 327
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=25.90 E-value=2.1e+02 Score=24.14 Aligned_cols=30 Identities=7% Similarity=-0.064 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHL 82 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 82 (287)
..++..+|.+|...|++++|....++++..
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 456777888888888888888888888764
No 328
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.37 E-value=1.4e+02 Score=19.18 Aligned_cols=57 Identities=11% Similarity=-0.091 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 149 SRILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 149 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
..+-......+.+.|+|++|....+.. + .|+.. .++.|-.+.|-.+++...+.+.-.
T Consensus 39 E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 39 EAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 334444556778999999997654321 1 35553 788888999999888888865554
No 329
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=30.85 E-value=15 Score=32.59 Aligned_cols=47 Identities=15% Similarity=-0.018 Sum_probs=27.8
Q ss_pred HHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 023081 22 YVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDR 68 (287)
Q Consensus 22 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 68 (287)
.+..|+..+..|+|.-|.++...++..+|++..+...++.+|.++|.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~ 510 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGY 510 (668)
Confidence 34445555556666666666666666666666666666666655553
No 330
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.66 E-value=1.4e+02 Score=19.13 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHH-HHHHHHHhccCHHHHHHHHHHHHh
Q 023081 150 RILGNLGWAYMQKGNYTSAEVVYRKAQLIDPDANKAC-NLSHCLIKQARYTEARSVLEDVLL 210 (287)
Q Consensus 150 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~ 210 (287)
.+-......+.+.|+|++|....+.. + .|+.. .++.|-.+.|-.+++...+.+.-.
T Consensus 41 ~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 41 AVQLIRLSSLMNRGDYASALQQGNKL----A-YPDLEPWLALCEYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTS----C-CGGGHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34444556778999999998766532 2 34443 788888899988888877755443
No 331
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=23.93 E-value=2.4e+02 Score=21.52 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=33.7
Q ss_pred hHHHHhHHhHHhhCCHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHH
Q 023081 20 SPYVRAKHVQLVEKDPEAAIVLFWKAINAG--DR-VDSALKDMAVVLK 64 (287)
Q Consensus 20 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~ 64 (287)
+-..+++++..+.++|++.+.+..++...+ +. ..+-...+..+|.
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYK 56 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYK 56 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHH
Confidence 445678888899999999999999998876 43 3455666666653
No 332
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=23.50 E-value=1.9e+02 Score=20.18 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=45.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhccchhhhhcCCChhHHHHHHH
Q 023081 60 AVVLKQQDRVDEAVEAIKSFRHLCSKQAQESLDNVLIDLYKKCGRLDEQI-ELLKQKLRMIYHGEAFNGKPTKTARSHGK 138 (287)
Q Consensus 60 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~a~~~~~ 138 (287)
+...+-..+|.+.+..++. .+|+.......+.+|..|.......+-. +.....+.
T Consensus 15 a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~it--------------------- 70 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNIT--------------------- 70 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCC---------------------
T ss_pred HHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCC---------------------
Confidence 4445556677776666554 3444322245666777777666544221 11111111
Q ss_pred HHhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023081 139 KFQVTVKQETSRILGNLGWAYMQKGNYTSAEVVYRKA 175 (287)
Q Consensus 139 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 175 (287)
+.. .-.+.+=|+|.-.|++++|+...+..
T Consensus 71 ---lkS-----de~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 71 ---LKT-----DEQYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp ---TTS-----CHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---ccC-----CHHHHHHHHHHcCCchHHHHHHHHhc
Confidence 111 11233457778889999999987765
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.90 E-value=87 Score=23.24 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=30.1
Q ss_pred HhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 023081 27 HVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQD 67 (287)
Q Consensus 27 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g 67 (287)
-++..+|.+++|.+.+++.+..+|.+......|..+-....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 45677999999999999999877666555556665554443
No 334
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.55 E-value=3e+02 Score=21.66 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=20.6
Q ss_pred CchHHH-HHHHHHHhccCHHHHHHHHH
Q 023081 181 DANKAC-NLSHCLIKQARYTEARSVLE 206 (287)
Q Consensus 181 ~~~~~~-~l~~~~~~~g~~~~A~~~~~ 206 (287)
.++... .+|..+...|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 355655 78999999999999988774
No 335
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=20.98 E-value=1 Score=38.31 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=42.2
Q ss_pred CCchHHHHhHHhHHhhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023081 17 PGDSPYVRAKHVQLVEKDPEAAIVLFWKAINAGDRVDSALKDMAVVLKQQDRVDEAVEAIKSFRH 81 (287)
Q Consensus 17 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 81 (287)
+.+..|..+|.+++..+...+||+.|-++ +++..+.....+..+.|.+++-+.+++-+.+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 46788889999999999999999888443 2333355555566677777777777766544
No 336
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.85 E-value=1.5e+02 Score=19.00 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQL 177 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 177 (287)
++.....-|.-..+.|+|++|...++++-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777788888888888877643
No 337
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=20.70 E-value=1.6e+02 Score=18.23 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 023081 53 DSALKDMAVVLKQQDRVDEAVEAIKSFRHLCS 84 (287)
Q Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 84 (287)
+.....-|.-+++.++|.+|...|+++.....
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 34555567778889999999999999876543
No 338
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.60 E-value=1.5e+02 Score=18.87 Aligned_cols=29 Identities=14% Similarity=0.351 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023081 148 TSRILGNLGWAYMQKGNYTSAEVVYRKAQ 176 (287)
Q Consensus 148 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al 176 (287)
++.....-+.-..+.|+|++|...++++-
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45555566666778888888888777764
No 339
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.33 E-value=3.3e+02 Score=21.72 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=20.1
Q ss_pred CchHHH-HHHHHHHhccCHHHHHHHH
Q 023081 181 DANKAC-NLSHCLIKQARYTEARSVL 205 (287)
Q Consensus 181 ~~~~~~-~l~~~~~~~g~~~~A~~~~ 205 (287)
.++... .+|..|.+.+++.+|..+|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 345555 7899999999999998877
Done!