Query 023083
Match_columns 287
No_of_seqs 94 out of 96
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:04:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023083.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023083hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfb_A Putative uncharacterize 97.0 0.0096 3.3E-07 51.2 12.7 110 157-283 50-162 (171)
2 3mmh_A FRMSR, methionine-R-sul 97.0 0.0093 3.2E-07 50.4 12.4 127 138-283 31-162 (167)
3 3p01_A Two-component response 96.8 0.0087 3E-07 48.4 9.6 109 161-282 65-178 (184)
4 3ksh_A Putative uncharacterize 96.7 0.028 9.6E-07 47.6 12.5 126 137-280 30-158 (160)
5 3e0y_A Conserved domain protei 96.6 0.022 7.4E-07 44.2 10.2 82 187-281 83-164 (181)
6 3trc_A Phosphoenolpyruvate-pro 96.5 0.067 2.3E-06 41.1 12.7 83 186-281 77-159 (171)
7 1f5m_A GAF; CGMP binding, sign 96.4 0.055 1.9E-06 45.6 12.4 131 138-284 41-180 (180)
8 1vhm_A Protein YEBR; structura 96.3 0.059 2E-06 46.6 12.5 109 157-282 61-172 (195)
9 3o5y_A Sensor protein; GAF dom 96.1 0.069 2.3E-06 44.2 11.3 109 158-281 23-141 (165)
10 3ci6_A Phosphoenolpyruvate-pro 96.0 0.09 3.1E-06 39.7 10.9 82 187-281 80-161 (171)
11 3oov_A Methyl-accepting chemot 95.6 0.21 7.3E-06 38.2 11.6 123 150-282 24-161 (169)
12 2e4s_A CAMP and CAMP-inhibited 95.4 0.013 4.3E-07 46.4 4.0 84 186-281 90-174 (189)
13 2w3g_A DOSS, two component sen 95.4 0.034 1.2E-06 41.9 6.2 81 187-281 62-143 (153)
14 3hcy_A Putative two-component 95.3 0.0061 2.1E-07 47.0 2.0 53 222-282 86-138 (151)
15 2zmf_A CAMP and CAMP-inhibited 95.2 0.018 6E-07 45.2 4.4 84 186-281 90-174 (189)
16 3dba_A CONE CGMP-specific 3',5 95.1 0.024 8.3E-07 46.4 4.9 81 186-278 87-168 (180)
17 2vjw_A GAF-B, GAF family prote 94.6 0.29 9.8E-06 39.3 10.0 72 186-281 60-132 (149)
18 2qyb_A Membrane protein, putat 94.5 0.34 1.2E-05 38.0 10.0 82 187-282 73-157 (181)
19 3k2n_A Sigma-54-dependent tran 94.4 0.042 1.4E-06 43.0 4.5 52 222-281 113-164 (177)
20 2k2n_A Sensor protein, SYB-CPH 92.8 0.054 1.8E-06 43.4 2.6 51 223-281 115-165 (172)
21 2lb5_A Sensor histidine kinase 92.7 0.11 3.8E-06 42.6 4.5 51 223-281 145-195 (208)
22 3ibj_A CGMP-dependent 3',5'-cy 91.8 1.3 4.5E-05 44.0 11.7 85 186-281 250-335 (691)
23 1ykd_A Adenylate cyclase; GAF 91.5 0.35 1.2E-05 43.5 6.7 132 138-280 22-181 (398)
24 1mc0_A 3',5'-cyclic nucleotide 90.4 0.36 1.2E-05 42.6 5.5 86 186-282 250-336 (368)
25 4glq_A Methyl-accepting chemot 90.4 1.2 4E-05 36.7 8.3 124 145-281 14-152 (171)
26 1ykd_A Adenylate cyclase; GAF 86.2 0.53 1.8E-05 42.4 3.8 86 187-281 268-374 (398)
27 3cit_A Sensor histidine kinase 74.2 4.1 0.00014 34.8 5.0 54 220-281 89-145 (160)
28 2w1r_A Spovt, stage V sporulat 70.0 23 0.00077 28.0 8.2 111 151-282 8-122 (123)
29 3bjc_A CGMP-specific 3',5'-cyc 61.1 1.7 5.9E-05 44.8 0.0 85 188-282 414-507 (878)
30 1mc0_A 3',5'-cyclic nucleotide 54.6 12 0.00039 32.9 4.2 80 188-280 82-163 (368)
31 3bjc_A CGMP-specific 3',5'-cyc 53.8 2.7 9.3E-05 43.3 0.0 84 188-282 232-318 (878)
32 3im4_C Dual specificity A kina 46.3 5.8 0.0002 27.5 0.7 12 140-151 10-21 (45)
33 4gb7_A 6-aminohexanoate-dimer 45.9 29 0.00098 32.3 5.6 60 152-212 102-171 (422)
34 3ibj_A CGMP-dependent 3',5'-cy 35.2 16 0.00053 36.3 2.1 81 187-279 81-162 (691)
35 3zq5_A Phytochrome-like protei 31.2 64 0.0022 32.0 5.7 78 149-236 354-433 (520)
36 3nhq_A Bacteriophytochrome; ph 21.3 79 0.0027 31.2 4.3 80 147-236 339-418 (505)
No 1
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.05 E-value=0.0096 Score=51.16 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=79.6
Q ss_pred hccccEEEEEECCEEEEeeeecCCCC--CCh-HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEe
Q 023083 157 NTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQP 233 (287)
Q Consensus 157 nT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQP 233 (287)
..+.+++-++.++++.+..+-+.++. +.. .-||-++.++.+..-.-|. .-+|+... .+ ..++|.||.|
T Consensus 50 ~~~~~gfYL~~~~~L~l~a~~G~~a~~ri~~GeGv~G~va~tg~~i~V~Dv---~~~p~~i~---~~---~~~~Sei~VP 120 (171)
T 3rfb_A 50 NTVFAGFYLFDGKELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDV---TTYLNYIS---CD---SLAKSEIVVP 120 (171)
T ss_dssp TEEEEEEEEECSSEEEEEEEESSSCCCEEETTSHHHHHHHHTTSCEEESCT---TSCSSCCC---SC---TTCCEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEeccCCccceEeeCCcCHHHHHHhhCCEEEECCc---ccCccccc---cC---cccCceEEEE
Confidence 35566766667777554333333332 222 3477888888888776666 56676543 12 4689999999
Q ss_pred ccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccccc
Q 023083 234 VIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSIW 283 (287)
Q Consensus 234 ig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~~ 283 (287)
|-.+ .+.=|||-+.+..++.|++.|+.+++.+|+-+..+..|
T Consensus 121 I~~~--------g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~~~~ 162 (171)
T 3rfb_A 121 MMKN--------GQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLEKTTW 162 (171)
T ss_dssp EEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHSCBC
T ss_pred EEEC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9652 24479999999999999999999999999999999888
No 2
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.04 E-value=0.0093 Score=50.40 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHHHhhhccccEEEEEE--CCEEEEeeeecCCCC--CCh-HHHHHHHHHhhhhcccccCCCcccccC
Q 023083 138 NISDALKENLAWATYVLLRNTNSISVLISI--RGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQ 212 (287)
Q Consensus 138 ~Lsd~~k~ELAWaS~~LLtnT~a~svlV~~--~g~ll~RG~~~~p~~--~~~-g~i~~~~~~~~~~~~Lv~L~~t~lyPg 212 (287)
|+.+.+.+=++-..+.+ ..+.+++.++. ++++..+-+-+.+.. +.. .-+|-++.++.+..-.-|. .-+|+
T Consensus 31 dl~~~L~~v~~~l~~~l--~~~~~~iyL~d~~~~~L~l~a~~G~~~~~~i~~geGi~G~v~~~g~~~~v~Dv---~~~p~ 105 (167)
T 3mmh_A 31 DWVANLANTAAVLKEAF--GWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDV---DAHPD 105 (167)
T ss_dssp CHHHHHHHHHHHHHHHH--CCSEEEEEEEETTTTEEEEEEEESSCCCSEEETTSHHHHHHHHHTSCEEESCG---GGSTT
T ss_pred CHHHHHHHHHHHHHHHc--CCcEEEEEEEECCCCEEEEEEecccccceEeccCCChHHHHHhCCcEEEECCc---ccCcc
Confidence 44445544444444444 35666666663 345554433333332 222 2477888888888766666 45665
Q ss_pred CccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccccc
Q 023083 213 SADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSIW 283 (287)
Q Consensus 213 r~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~~ 283 (287)
... . -.+++|.+|.||-.+ .+.=|||-+.+..++.||+.|+.+++.+|+-+.....|
T Consensus 106 ~~~---~---~~~~~S~i~vPi~~~--------g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~~i~~ 162 (167)
T 3mmh_A 106 HIA---C---SSLSRSEIVVPLFSD--------GRCIGVLDADSEHLAQFDETDALYLGELAKILEKRFEA 162 (167)
T ss_dssp CCC---S---STTCCEEEEEEEEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh---c---CccCCeEEEEEeccC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 433 1 257999999999652 24579999999999999999999999999998776544
No 3
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=96.75 E-value=0.0087 Score=48.37 Aligned_cols=109 Identities=9% Similarity=0.045 Sum_probs=72.0
Q ss_pred cEEEEEECCEEEE-eeeecCCC----CCChHHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEecc
Q 023083 161 ISVLISIRGELCV-RGYWQTPD----GASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVI 235 (287)
Q Consensus 161 ~svlV~~~g~ll~-RG~~~~p~----~~~~g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig 235 (287)
+++..+.+|++.. .+.+..++ .+....++.++.+..+....-|..+..-|+.+. .+-..|.+|+++.||-
T Consensus 65 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~-----~~~~~~~~s~l~vPL~ 139 (184)
T 3p01_A 65 CILQMLEGQTLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVAANIAKDPKLASIS-----QYQDNGIQSHVVIPIT 139 (184)
T ss_dssp EEEEEEETTEEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEESCGGGCHHHHTCH-----HHHHHTCCEEEEEEEE
T ss_pred EEEEEecCCceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEEeccccCccccchh-----HHHHhCccEEEEEEEE
Confidence 3444456777543 44232221 123467888888888877665553333333211 1223488999999996
Q ss_pred CCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhccccc
Q 023083 236 QAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 236 ~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
.+ .+.-|+|.+.+..+|.||+.|...++.+|+.+..+.+
T Consensus 140 ~~--------~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi~ 178 (184)
T 3p01_A 140 YR--------NEMLGVLSLQWQQPISLREDELTLIHLSAQLVAIALT 178 (184)
T ss_dssp ET--------TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EC--------CEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 52 3457999999999999999999999999998876543
No 4
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=96.68 E-value=0.028 Score=47.60 Aligned_cols=126 Identities=14% Similarity=0.182 Sum_probs=84.5
Q ss_pred cCchHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEeeeecCCCC--CCh-HHHHHHHHHhhhhcccccCCCcccccCC
Q 023083 137 QNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQS 213 (287)
Q Consensus 137 ~~Lsd~~k~ELAWaS~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~~~~~~~~~~~Lv~L~~t~lyPgr 213 (287)
.|+.+.+.+=.+-..+.+ ...+.+++-++.++++.+..+-+.++. +.. .-+|-++.++.+..-.-|. .-+|+.
T Consensus 30 ~dl~~~L~~v~~ll~~~l-~~~~~~gfYL~~~~~L~l~~~~G~~a~~ri~~GeGv~G~aa~~~~~i~V~Dv---~~~p~~ 105 (160)
T 3ksh_A 30 HHMIAILSNMSALLNDNL-DQINWVGFYLLEQNELILGPFQGHPACVHIPIGKGVCGTAVSERRTQVVADV---HQFKGH 105 (160)
T ss_dssp CCHHHHHHHHHHHHHHHC-SSCSEEEEEEEETTEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCG---GGSTTC
T ss_pred CCHHHHHHHHHHHHHHHc-ccCCEEEEEEEECCEEEEEeccCCcccEEeeCCCCHHHHHHhhCCEEEECCc---ccCccc
Confidence 344444444333333333 235677877778888554333333332 222 3477888888888776666 567775
Q ss_pred ccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhccc
Q 023083 214 ADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGK 280 (287)
Q Consensus 214 ~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~ 280 (287)
.. .+ ..++|.+|.||-.+ .+.=|||-+.+..++.|++.|+.+++.+|+-+...
T Consensus 106 i~---~~---~~~~Sei~VPI~~~--------g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~~ 158 (160)
T 3ksh_A 106 IA---CD---ANSKSEIVVPIFKD--------DKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEKQ 158 (160)
T ss_dssp CG---GG---TTCSEEEEEEEEET--------TEEEEEEEEEESSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cc---cC---cccCceEEEEEEEC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44 22 46899999999652 24579999999999999999999999999987643
No 5
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.55 E-value=0.022 Score=44.25 Aligned_cols=82 Identities=11% Similarity=0.156 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhh
Q 023083 187 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKD 266 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kD 266 (287)
.++.++.+..+....-+..+...|..+.+ ....+.+++++.||..+ .+.-|+|.+.+..++.||+.|
T Consensus 83 ~~~~~~~~~~~~~~i~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~iGvl~~~~~~~~~f~~~~ 149 (181)
T 3e0y_A 83 GITGSVARDGQYISLSRASQDPRYRYFPE-----LQEEKYNSMLSFPIGDK--------KEVYGVINLNTTSIRSFHEDE 149 (181)
T ss_dssp SSHHHHHHHCCCEEEEEECCCCCC--------------CEEEEEEEEEECS--------SCEEEEEEEEESSCCCCCHHH
T ss_pred CeeeehhhcCCeEEecCcccCcccccccc-----ccccCcceEEEEEEEeC--------CeEEEEEEEeeCCCCCCCHHH
Confidence 35677888877776655543222222111 12357899999999763 345799999999999999999
Q ss_pred HHHHHHHHhhhcccc
Q 023083 267 RAWIKAVSNKFRGKS 281 (287)
Q Consensus 267 e~WI~~iA~KL~~~~ 281 (287)
...++.+|+.+..+.
T Consensus 150 ~~~l~~la~~~a~al 164 (181)
T 3e0y_A 150 IYFVSIIANLILTAI 164 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999876554
No 6
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=96.50 E-value=0.067 Score=41.14 Aligned_cols=83 Identities=11% Similarity=0.213 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchh
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHK 265 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~k 265 (287)
..++.++.+..+...+-+..+..-|....+ .--.+..++++.||-.+ .+.-|+|.+.+..++.||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~~Gvl~~~~~~~~~f~~~ 143 (171)
T 3trc_A 77 EGLIGLVGEREEPINLADAPLHPAYKHRPE-----LGEEDYHGFLGIPIIEQ--------GELLGILVIQQLESHHFAEE 143 (171)
T ss_dssp CHHHHHHHHHTSCEEESCGGGSTTCCCCGG-----GCCCCCCEEEEEEEEET--------TEEEEEEEEEESSSCCCCHH
T ss_pred CChhhHHHhcCCeEEeCCCCCCCccccccc-----CCcccccEEEEEeEEEC--------CEEEEEEEEeecCCCCCCHH
Confidence 356778888888776665543222322222 12368899999999762 34579999999999999999
Q ss_pred hHHHHHHHHhhhcccc
Q 023083 266 DRAWIKAVSNKFRGKS 281 (287)
Q Consensus 266 De~WI~~iA~KL~~~~ 281 (287)
|...++.+|+.+..+.
T Consensus 144 d~~~l~~la~~~a~ai 159 (171)
T 3trc_A 144 EEAFCVTLAIHLAAEI 159 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877654
No 7
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=96.37 E-value=0.055 Score=45.63 Aligned_cols=131 Identities=12% Similarity=0.085 Sum_probs=81.9
Q ss_pred CchHHHHHHHHHHHHHHh---hhccccEEEEEEC---CEEEEeeeecCCCCC--Ch-HHHHHHHHHhhhhcccccCCCcc
Q 023083 138 NISDALKENLAWATYVLL---RNTNSISVLISIR---GELCVRGYWQTPDGA--SK-TQLLEWFERQIENIGLSDLKDSL 208 (287)
Q Consensus 138 ~Lsd~~k~ELAWaS~~LL---tnT~a~svlV~~~---g~ll~RG~~~~p~~~--~~-g~i~~~~~~~~~~~~Lv~L~~t~ 208 (287)
++.+.+.+-++-..+.+- ...+..++-++.+ +++....+.+.++.. .. .-+|-++.++.+..-.-|. .
T Consensus 41 dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~~~~i~~g~Gi~G~aa~~g~~v~v~Dv---~ 117 (180)
T 1f5m_A 41 NWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDV---N 117 (180)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCG---G
T ss_pred cHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCccceeecCCCcchhhhhhcCCEEEeCCc---c
Confidence 344444444444444441 2334455555543 454433222222221 11 2267788888887766665 3
Q ss_pred cccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccccce
Q 023083 209 YFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSIWI 284 (287)
Q Consensus 209 lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~~~ 284 (287)
-+|+... ...++.|++|.||-.+ ..+.-|||-+.+..++.|++.|+..++.+|+-+..+..|+
T Consensus 118 ~dp~~~~------~~~~~~S~l~vPi~~~-------~g~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~~~~~~ 180 (180)
T 1f5m_A 118 KYPGHIA------CDGETKSEIVVPIISN-------DGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINKSCVFK 180 (180)
T ss_dssp GSTTCCC------SSTTCCEEEEEEEECT-------TSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHCBC-
T ss_pred cCccccc------cCcccceEEEEEEEcC-------CCeEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHHhcCCC
Confidence 4444332 2468999999999751 1234799999999999999999999999999999888774
No 8
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.31 E-value=0.059 Score=46.65 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=75.1
Q ss_pred hccccEEEEEECCEEEEeeeecCCCC--CCh-HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEe
Q 023083 157 NTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQP 233 (287)
Q Consensus 157 nT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQP 233 (287)
..+..++-++.++++.....-+.++. +.. .-+|-++.++.+..-.-|+ .-+|+... . ..+++|.||.|
T Consensus 61 ~~~~~~iyL~d~~~L~l~~~~G~~~~~~i~~GeGi~G~aa~tg~~i~V~Dv---~~~p~~~~---~---~~~~~S~l~VP 131 (195)
T 1vhm_A 61 DINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV---HVFDGHIA---C---DAASNSEIVLP 131 (195)
T ss_dssp SCSEEEEEEEETTEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCT---TTCTTCCC---S---CCCCSEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEEecCcccceEecCCCChHHHHHhcCCEEEECCc---ccCcchhh---c---CCCccEEEEEe
Confidence 44556666677777544322222222 222 2377888888887766666 34566544 2 24789999999
Q ss_pred ccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhccccc
Q 023083 234 VIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 234 ig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
|-.+ .+.-|||-+.+..++.|++.|+..++.+|+-+..+.+
T Consensus 132 I~~~--------g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ia~ale 172 (195)
T 1vhm_A 132 LVVK--------NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 172 (195)
T ss_dssp EEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeEC--------CEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9752 3457999999999999999999999999998876654
No 9
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=96.08 E-value=0.069 Score=44.17 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=71.2
Q ss_pred ccccEEEEEECCEEEEeeeecCCC-------CCCh-HHHHHHHHHhhhhcccccCCCc--ccccCCccccccccCCCCCc
Q 023083 158 TNSISVLISIRGELCVRGYWQTPD-------GASK-TQLLEWFERQIENIGLSDLKDS--LYFPQSADAGQWEMLPKGTC 227 (287)
Q Consensus 158 T~a~svlV~~~g~ll~RG~~~~p~-------~~~~-g~i~~~~~~~~~~~~Lv~L~~t--~lyPgr~E~~~~~~LP~ntq 227 (287)
....+++.+.+|++..+-..+... .+.. +.++.++.++.+..- .+..+. .+.++ ..+...+.+
T Consensus 23 ~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v-~~~~~~~~~~~~~------~~~~~~~~~ 95 (165)
T 3o5y_A 23 FDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIF-RSLTDTQDNFYEK------QYLAILDLK 95 (165)
T ss_dssp CSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEE-EESCCTTCCCTTH------HHHHTTTCC
T ss_pred cceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEE-EcCcccccccccc------hHHHhhCCC
Confidence 344566667788855433332211 1111 467788888887763 343211 11111 013457899
Q ss_pred eeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccc
Q 023083 228 SVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 228 sVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
|++|.||-.+ .+.-|+|.+++..++.||+.|..+++.+|+.+..+.
T Consensus 96 S~l~vPL~~~--------~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~aiai 141 (165)
T 3o5y_A 96 SILVIPIYSK--------NKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAVSI 141 (165)
T ss_dssp EEEEEEEECS--------SCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCeeEC--------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999763 344799999999999999999999999999876543
No 10
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=96.03 E-value=0.09 Score=39.73 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=56.6
Q ss_pred HHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhh
Q 023083 187 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKD 266 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kD 266 (287)
.++.++.+..+....-+..+...|....+ +-..+..++++.||-.+ .+.-|+|.+++..++.||+.|
T Consensus 80 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~f~~~~ 146 (171)
T 3ci6_A 80 GLVGLVGQREEIVNLENASKHERFAYLPE-----TGEEIYNSFLGVPVMYR--------RKVMGVLVVQNKQPQDFSEAA 146 (171)
T ss_dssp HHHHHHHHHTSCEEESSGGGSTTC--------------CCCEEEEEEEEET--------TEEEEEEEEEESSCCCCCHHH
T ss_pred CeehhhhccCceEEecCCCcCcchhcccc-----ccccccceEEEEeEEEC--------CEEEEEEEEecCCCCCCCHHH
Confidence 47788888877766655532222222211 14457899999999752 234799999999999999999
Q ss_pred HHHHHHHHhhhcccc
Q 023083 267 RAWIKAVSNKFRGKS 281 (287)
Q Consensus 267 e~WI~~iA~KL~~~~ 281 (287)
...++.+|+.+..+.
T Consensus 147 ~~~l~~la~~~a~al 161 (171)
T 3ci6_A 147 ESFLVTLCAQLSGVI 161 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
No 11
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=95.60 E-value=0.21 Score=38.18 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=75.5
Q ss_pred HHHHHhhhccccEEEEE-EC-C--EEEEeeeecCCC----C----CC-hHHHHHHHHHhhhhcccccCCCc-ccccCCcc
Q 023083 150 ATYVLLRNTNSISVLIS-IR-G--ELCVRGYWQTPD----G----AS-KTQLLEWFERQIENIGLSDLKDS-LYFPQSAD 215 (287)
Q Consensus 150 aS~~LLtnT~a~svlV~-~~-g--~ll~RG~~~~p~----~----~~-~g~i~~~~~~~~~~~~Lv~L~~t-~lyPgr~E 215 (287)
.-+.+...+.+....|+ ++ + .+..+...+... . +. ...++.++.+..+....-+..+. .+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~~ 103 (169)
T 3oov_A 24 CAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQSP 103 (169)
T ss_dssp HHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCTT
T ss_pred HHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEEeccccchhhhhhcccc
Confidence 44555666666655444 33 2 343343333221 1 11 36778888888887766555321 22322221
Q ss_pred ccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccchhhHHHHHHHHhhhccccc
Q 023083 216 AGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 216 ~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
.-..-..+..++++.||-.+ .+.-|+|.+++..+ +.|++.|...++.+|+.+..+.+
T Consensus 104 --~~~~~~~~~~s~l~vPl~~~--------~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a~~~a~ai~ 161 (169)
T 3oov_A 104 --YDAIRALRSKSFVICPIVVK--------GEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQASSAIV 161 (169)
T ss_dssp --GGGCGGGCCSSEEEEEEEET--------TEEEEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcCcCcEEEEEEEeC--------CcEEEEEEEEccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 00123467899999999752 34579999998765 56999999999999998876543
No 12
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=95.40 E-value=0.013 Score=46.39 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-afT~ 264 (287)
..++.++.+..+...+-|..+...|+...+ .+...++.++++.||-.+ .+.-|+|.+.+..++ .||+
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~--------~~~iGvl~l~~~~~~~~f~~ 157 (189)
T 2e4s_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVD----LYTGYTTRNILCMPIVSR--------GSVIGVVQMVNKISGSAFSK 157 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSSSCCH
T ss_pred CcHHHHHHHhCCEEEecCCCcCcccChhhc----cccCCccceEEEEEeccC--------CeEEEEEEEEeCCCCCCCCH
Confidence 457888888888876666543333332212 123467899999999752 344799999998887 9999
Q ss_pred hhHHHHHHHHhhhcccc
Q 023083 265 KDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~ 281 (287)
.|...++.+|+-+..+.
T Consensus 158 ~d~~ll~~la~~~a~ai 174 (189)
T 2e4s_A 158 TDENNFKMFAVFCALAL 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876554
No 13
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=95.37 E-value=0.034 Score=41.87 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccchh
Q 023083 187 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSHK 265 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-RafT~k 265 (287)
.++.++.+..+....-+..+...|.+. .....+..++++.||-.+ .+.-|+|.+.+..+ |.||+.
T Consensus 62 ~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~~f~~~ 127 (153)
T 2w3g_A 62 GVIGLLIEDPKPLRLDDVSAHPASIGF------PPYHPPMRTFLGVPVRVR--------DESFGTLYLTDKTNGQPFSDD 127 (153)
T ss_dssp THHHHHHHSCSCEEESSGGGSTTCCCC------CTTCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSCCCCHH
T ss_pred CHHHHHHhcCCcEEecCcccCchhcCC------CCcCCCCCeEEEeeEEEC--------CEEEEEEEEeeCCCCCCCCHH
Confidence 466777777776655554322222221 113468899999999652 23479999999888 899999
Q ss_pred hHHHHHHHHhhhcccc
Q 023083 266 DRAWIKAVSNKFRGKS 281 (287)
Q Consensus 266 De~WI~~iA~KL~~~~ 281 (287)
|...++.+|+-+..+.
T Consensus 128 ~~~~l~~la~~~a~ai 143 (153)
T 2w3g_A 128 DEVLVQALAAAAGIAV 143 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 14
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=95.35 E-value=0.0061 Score=47.02 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=44.2
Q ss_pred CCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhccccc
Q 023083 222 LPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 222 LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
...|.+++++.||..+ .+.-|+|.+.+..+|.||+.|...++.+|+.+..+.+
T Consensus 86 ~~~g~~s~~~vPl~~~--------~~~iGvl~~~~~~~~~f~~~~~~ll~~~a~~~a~ai~ 138 (151)
T 3hcy_A 86 VGEGIAALGFFPLVTE--------GRLIGKFMTYYDRPHRFADSEIGMALTIARQLGFSIQ 138 (151)
T ss_dssp HHHTCCEEEEEEEESS--------SSEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCchheEEeceEEC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999762 2347999999999999999999999999998766543
No 15
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=95.24 E-value=0.018 Score=45.22 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEE-eeCCccccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLL-ASSMTYAYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvl-gs~s~RafT~ 264 (287)
..++.++.++.+...+-+..+...|+.... .....++++++|.|+..+ .+.-|+|.+ ....+|.||+
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~~f~~ 157 (189)
T 2zmf_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVD----LYTGYTTRNILCMPIVSR--------GSVIGVVQMVNKISGSAFSK 157 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSSSCCH
T ss_pred ccHHHHHHHhCCeEEEecccccccccccch----hhcccccceEEEeeeccc--------CceeeEEEEEEcCCCCCcCH
Confidence 346778888887776555432222222111 223446889999998762 234688855 5677899999
Q ss_pred hhHHHHHHHHhhhcccc
Q 023083 265 KDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~ 281 (287)
.|...++.+|+.+..+.
T Consensus 158 ~d~~ll~~lA~q~a~Ai 174 (189)
T 2zmf_A 158 TDENNFKMFAVFCALAL 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876554
No 16
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=95.08 E-value=0.024 Score=46.41 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-afT~ 264 (287)
.-|+.++.++++..-+-|..+..-|+...+ ...-..++|+||.||-.+ .+.=|||.+.+..+. .||+
T Consensus 87 ~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~----~~~~~~~~S~L~vPl~~~--------~~viGVL~l~n~~~~~~Ft~ 154 (180)
T 3dba_A 87 IGIAGWVAHTKKFFNIPDVKKNNHFSDYLD----KKTGYTTVNMMAIPITQG--------KEVLAVVMALNKLNASEFSK 154 (180)
T ss_dssp SSHHHHHHHHTCCEEESCGGGCTTCCCHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEESSSSSCCH
T ss_pred CCHHHHHHHhCCEEEecCCCCCcccChhhc----cccCccccEEEEEEeccC--------CEEEEEEEEEeCCCCCCCCH
Confidence 357889999988877666643333332221 001135799999999762 345799999988775 9999
Q ss_pred hhHHHHHHHHhhhc
Q 023083 265 KDRAWIKAVSNKFR 278 (287)
Q Consensus 265 kDe~WI~~iA~KL~ 278 (287)
.|+..++.+|+-..
T Consensus 155 ~d~~lL~~lA~~aa 168 (180)
T 3dba_A 155 EDEEVFKKYLNFIS 168 (180)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997543
No 17
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=94.59 E-value=0.29 Score=39.27 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeC-Cccccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASS-MTYAYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~-s~RafT~ 264 (287)
+.++.++.++.++.-.-|.. .+ | +..|+||.||..+ .+.-|+|.+... .++.||+
T Consensus 60 ~g~~g~v~~~g~~v~v~d~~--------~d-------~-~~~s~l~vPL~~~--------~~~~GvL~l~~~~~~~~f~~ 115 (149)
T 2vjw_A 60 DNAIGQAFRDRAPRRLDVLD--------GP-------G-LGGPALVLPLRAT--------DTVAGVLVAVQGSGARPFTA 115 (149)
T ss_dssp SSHHHHHHHHCCCEEESCCC--------TT-------S-CEEEEEEEEEEET--------TEEEEEEEEEEETTCCCCCH
T ss_pred CCHHHHHhhcCceEEecCcc--------cC-------C-CCCeEEEEEEccC--------CeEEEEEEEeeCCCCCCCCH
Confidence 35778888888877665542 11 1 7899999999752 234799999998 8999999
Q ss_pred hhHHHHHHHHhhhcccc
Q 023083 265 KDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~ 281 (287)
.|..-++.+|+....++
T Consensus 116 ~d~~ll~~lA~~aa~al 132 (149)
T 2vjw_A 116 EQLEMMTGFADQAAVAW 132 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766543
No 18
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=94.46 E-value=0.34 Score=38.04 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhhcccccCCCcccccCCcccccc-ccCCCCCceeEEEeccCCCCCCcccccc-cceEEEEee-CCccccc
Q 023083 187 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQW-EMLPKGTCSVFVQPVIQAPNPSAVEVEK-IEGFVLLAS-SMTYAYS 263 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~-~~LP~ntqsVlvQPig~~~~~~~~~~~~-~~Gvlvlgs-~s~RafT 263 (287)
.++.++.+..+....-+. ...|. .. +. .+...|..++++.||..+ .+ .-|+|.+.+ ..++.||
T Consensus 73 ~~~~~~~~~~~~~~v~d~---~~~~~-~~--~~~~~~~~g~~s~~~vPl~~~--------~~~~~GvL~l~~~~~~~~f~ 138 (181)
T 2qyb_A 73 TYIGEAFLSNRLQFVNDT---QYMTK-PL--TRELMQKEGIKSFAHIPISRK--------GEPPFGILSVFSRTIVGLFN 138 (181)
T ss_dssp SHHHHHHHHTSCEEESCG---GGCSC-HH--HHHHHHHTTCCEEEEEEECCT--------TSCCCEEEEEEESSCSSCCC
T ss_pred CchhhhhhcCCCEEecCh---hcCCc-hh--hHHHHHhcCcceEEEEEEEeC--------CCeEEEEEEEecCCCCCCCC
Confidence 477778887777655554 22232 11 00 122458999999999762 22 469999999 9999999
Q ss_pred hhhHHHHHHHHhhhccccc
Q 023083 264 HKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 264 ~kDe~WI~~iA~KL~~~~~ 282 (287)
+.|...++.+|+-+..+++
T Consensus 139 ~~d~~lL~~la~~~a~al~ 157 (181)
T 2qyb_A 139 EPFLNLLESLAGQLAQAVK 157 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998876554
No 19
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=94.42 E-value=0.042 Score=43.00 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=44.7
Q ss_pred CCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccc
Q 023083 222 LPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 222 LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
...|++++++.||-.+ .+.-|+|.+.+..++.||+.|...++.+|+.+..+.
T Consensus 113 ~~~~~~s~l~vPL~~~--------~~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai 164 (177)
T 3k2n_A 113 HELGMRQIVLSPLRSG--------GRVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAV 164 (177)
T ss_dssp HHHTCCEEEEEEEEET--------TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCceEEEEEEEEEC--------CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999763 256899999999999999999999999999877654
No 20
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=92.84 E-value=0.054 Score=43.41 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccc
Q 023083 223 PKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 223 P~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
..|++|+|+.||-.+ .+.-|+|.+-...+|.||+.|...++.+|+-+..+.
T Consensus 115 ~~~~~s~l~vPi~~~--------~~l~G~l~~~~~~~~~~~~~e~~~l~~la~~~a~ai 165 (172)
T 2k2n_A 115 SMGVASSLVVPLMHH--------QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAI 165 (172)
T ss_dssp TTTCSEEEECCCSCS--------SCCCEEEEEEECSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEEEEEC--------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 568999999999763 234799999999999999999999999999876554
No 21
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=92.72 E-value=0.11 Score=42.58 Aligned_cols=51 Identities=14% Similarity=0.296 Sum_probs=43.8
Q ss_pred CCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhcccc
Q 023083 223 PKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 223 P~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
..|++|+|+.||-.+ .+.-|+|.+-...+|.||+.|...++.+|+-+..+.
T Consensus 145 ~~~~~S~l~vPi~~~--------~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai 195 (208)
T 2lb5_A 145 SMGVASSLVVPLMHH--------QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAI 195 (208)
T ss_dssp HTTCSEEEEEEEEET--------TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEEEEEC--------CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 458999999999763 344799999999999999999999999999887654
No 22
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=91.84 E-value=1.3 Score=44.05 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-afT~ 264 (287)
..++.++.++++....-+..+...|+...+ ...-.++++++|.||..+ ..+.-|||.+....++ .||+
T Consensus 250 ~gi~g~v~~~g~~v~i~d~~~d~~~~~~~~----~~~g~~~rS~L~vPL~~~-------~g~viGVL~l~~~~~~~~f~~ 318 (691)
T 3ibj_A 250 QGIAGHVATTGQILNIPDAYAHPLFYRGVD----DSTGFRTRNILCFPIKNE-------NQEVIGVAELVNKINGPWFSK 318 (691)
T ss_dssp SHHHHHHHHHCSCEEESCSTTSTTC----------CCSCCCCCEEEEECCCS-------SSCCCEEEEEEEESSSSSCCT
T ss_pred CCHHHHHHHhCCEEEecCcccCccccchhh----cccCCeeeeEEEEeEECC-------CCCEEEEEEEEECCCCCCCCH
Confidence 457788889888876666543332322222 112245789999999762 1234699999988776 7999
Q ss_pred hhHHHHHHHHhhhcccc
Q 023083 265 KDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~ 281 (287)
.|+.-++.+|+.+..+.
T Consensus 319 ~d~~ll~~lA~~~aiAI 335 (691)
T 3ibj_A 319 FDEDLATAFSIYCGISI 335 (691)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876554
No 23
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=91.52 E-value=0.35 Score=43.51 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHHHHHHhhhccccEEEEE--EC--CEEEE---eeeecCCCCC---ChHHHHHHHHHhhhhcccccCCCc
Q 023083 138 NISDALKENLAWATYVLLRNTNSISVLIS--IR--GELCV---RGYWQTPDGA---SKTQLLEWFERQIENIGLSDLKDS 207 (287)
Q Consensus 138 ~Lsd~~k~ELAWaS~~LLtnT~a~svlV~--~~--g~ll~---RG~~~~p~~~---~~g~i~~~~~~~~~~~~Lv~L~~t 207 (287)
++.....+=|.-....+...+.+....|| .. +++.. .|.-.....+ ....++.++.+..+...+-|....
T Consensus 22 ~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~g~v~~~~~~v~i~d~~~~ 101 (398)
T 1ykd_A 22 GFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIAGEVATFKQVVNIPFDFYH 101 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHHHHHHHHCCCEEECSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchhhhhhccCcEEeccchhcc
Confidence 44444444455555555555666555554 32 23332 3322111111 113467788888777665554321
Q ss_pred ---ccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeC---------------CccccchhhHHH
Q 023083 208 ---LYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASS---------------MTYAYSHKDRAW 269 (287)
Q Consensus 208 ---~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~---------------s~RafT~kDe~W 269 (287)
..|+...+ .....+++++++.||-.. ..+.-|+|.+... .++.||+.|+.-
T Consensus 102 ~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~-------~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~ 170 (398)
T 1ykd_A 102 DPRSIFAQKQE----KITGYRTYTMLALPLLSE-------QGRLVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQL 170 (398)
T ss_dssp SGGGHHHHHHH----HHHCCCCSCEEEEEEECS-------SCCEEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHH
T ss_pred cchhhcccccC----cccCcCCceEEEEEEECC-------CCCEEEEEEEeccCCcccccccccccccccCCCCHHHHHH
Confidence 11211111 011246889999999641 1234799999887 789999999999
Q ss_pred HHHHHhhhccc
Q 023083 270 IKAVSNKFRGK 280 (287)
Q Consensus 270 I~~iA~KL~~~ 280 (287)
++.+|+.+..+
T Consensus 171 l~~~a~~~~~a 181 (398)
T 1ykd_A 171 FQEFAPSIRLI 181 (398)
T ss_dssp GGGTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888776544
No 24
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=90.38 E-value=0.36 Score=42.61 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023083 186 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 264 (287)
Q Consensus 186 g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-afT~ 264 (287)
..++.++.++.+....-+..+...|+...+ ....-.++++++.||... ..+.-|+|.+.+..++ .||+
T Consensus 250 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~-------~~~~iGvl~l~~~~~~~~f~~ 318 (368)
T 1mc0_A 250 QGIAGHVATTGQILNIPDAYAHPLFYRGVD----DSTGFRTRNILCFPIKNE-------NQEVIGVAELVNKINGPWFSK 318 (368)
T ss_dssp SHHHHHHHHHCCCEEESCSTTCTTCCCTTH----HHHTCCCCCEEEEEEECT-------TSCEEEEEEEEEETTSSSCCH
T ss_pred CceeeeehhhCCEEEecCcccCcccchhhh----hccCCccceEEEEeeECC-------CCcEEEEEEEEECCCCCCCCH
Confidence 347788888887766655533333332221 001113699999999751 1344799999998886 8999
Q ss_pred hhHHHHHHHHhhhccccc
Q 023083 265 KDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~~ 282 (287)
.|...++.+|+-+..+.+
T Consensus 319 ~d~~ll~~la~~~a~ai~ 336 (368)
T 1mc0_A 319 FDEDLATAFSIYCGISIA 336 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988766543
No 25
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=90.36 E-value=1.2 Score=36.75 Aligned_cols=124 Identities=9% Similarity=0.014 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhccccEEEEE-----ECCEEEEeeeec-CCC----CCChHHH---HHHHHHhhhhcccccCCCccccc
Q 023083 145 ENLAWATYVLLRNTNSISVLIS-----IRGELCVRGYWQ-TPD----GASKTQL---LEWFERQIENIGLSDLKDSLYFP 211 (287)
Q Consensus 145 ~ELAWaS~~LLtnT~a~svlV~-----~~g~ll~RG~~~-~p~----~~~~g~i---~~~~~~~~~~~~Lv~L~~t~lyP 211 (287)
+=|.-+...+...+.+.-++|| +.|++++-..-. -++ .+....+ .....++.+.....|. +.+
T Consensus 14 ~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~~I~Dv----~~~ 89 (171)
T 4glq_A 14 AIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQATTDI----FKA 89 (171)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCEEESCG----GGT
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEEEEcCc----CcC
Confidence 3445567778888888888887 235666532211 011 1111111 1222333333333333 333
Q ss_pred CCccccccc-cCCCCCceeEEEeccCCCCCCcccccccceEEEEee-CCccccchhhHHHHHHHHhhhcccc
Q 023083 212 QSADAGQWE-MLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLAS-SMTYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 212 gr~E~~~~~-~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs-~s~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
+..+.. -+ +-.-|.+|.|+.||..+ .+.-|+|.+-. ..+|.|++.|..+++.+|+.+..+.
T Consensus 90 ~~~~~~-~~~l~~~~v~S~L~vPi~~~--------~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~iAi 152 (171)
T 4glq_A 90 GLTECH-LNQLRPLKVRANLVVPMVID--------DQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSLVL 152 (171)
T ss_dssp TCCHHH-HHHHGGGTEEEEEEEEEEET--------TEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHH-HHHHHhcCCcEEEEEEEEEC--------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 322210 12 23579999999999763 23479999988 6899999999999999999887654
No 26
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=86.18 E-value=0.53 Score=42.37 Aligned_cols=86 Identities=14% Similarity=0.175 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhcccc-cCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCC-------
Q 023083 187 QLLEWFERQIENIGLS-DLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSM------- 258 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv-~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s------- 258 (287)
.++.++.++++....- |..+...|....+ +-......++|++|.||-.. ..+.-|+|.+....
T Consensus 268 ~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~--~~~~~~~~~~s~l~vPl~~~-------~~~~iGvl~l~~~~~~~~~~~ 338 (398)
T 1ykd_A 268 GFAGIVAASGQKLNIPFDLYDHPDSATAKQ--IDQQNGYRTCSLLCMPVFNG-------DQELIGVTQLVNKKKTGEFPP 338 (398)
T ss_dssp HHHHHHHHHCCCEEECSCGGGSTTCHHHHH--HHHHHTCCCCCEEEEEEECS-------SSCEEEEEEEEEECCSSCCCC
T ss_pred chhhHHhccCCeEEeccccccCcccCcccc--hhhhcCCeeeeEEEEeeecC-------CCCEEEEEEEEecCCcccccc
Confidence 4667788877766544 4422111211100 00001224899999999731 12346999999888
Q ss_pred -------------ccccchhhHHHHHHHHhhhcccc
Q 023083 259 -------------TYAYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 259 -------------~RafT~kDe~WI~~iA~KL~~~~ 281 (287)
++.||+.|..-++.+|+.+..++
T Consensus 339 ~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al 374 (398)
T 1ykd_A 339 YNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVAL 374 (398)
T ss_dssp CCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999876554
No 27
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=74.17 E-value=4.1 Score=34.81 Aligned_cols=54 Identities=19% Similarity=0.144 Sum_probs=40.0
Q ss_pred ccCCC-CCceeEEEec-cCCCCCCcccccccceEEEEeeCCcc-ccchhhHHHHHHHHhhhcccc
Q 023083 220 EMLPK-GTCSVFVQPV-IQAPNPSAVEVEKIEGFVLLASSMTY-AYSHKDRAWIKAVSNKFRGKS 281 (287)
Q Consensus 220 ~~LP~-ntqsVlvQPi-g~~~~~~~~~~~~~~Gvlvlgs~s~R-afT~kDe~WI~~iA~KL~~~~ 281 (287)
...|. -|++|+|.|+ +.+ | +.=||+++.....- +|++.|..=++.+|.-+..+.
T Consensus 89 ~~~tg~~t~svl~vPL~~~~------g--~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~ai 145 (160)
T 3cit_A 89 LERPGTHLPCVLLLPLRGAD------E--GSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHL 145 (160)
T ss_dssp EECTTSSSCEEEEEEEECSS------S--SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcccceeEEEeeecCC------C--cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33443 5899999999 552 2 44799888655555 899999999999998776543
No 28
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=69.97 E-value=23 Score=27.99 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=70.8
Q ss_pred HHHHhhhccccEEEEEECCEEEE-eeeec---CCCCCChHHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCC
Q 023083 151 TYVLLRNTNSISVLISIRGELCV-RGYWQ---TPDGASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGT 226 (287)
Q Consensus 151 S~~LLtnT~a~svlV~~~g~ll~-RG~~~---~p~~~~~g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~nt 226 (287)
.+.|...|.. .|.|.+..++++ -|.-. .+..+ ....+.+++..+....-+- ..++--.+ .+ ...
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~~~~~~~i--s~~~~~~i~~~k~~~~~~~---~~~~~~~~---~~---~~~ 75 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKKDYLNKSI--SEMLERTMDQRSSVLESDA---KSVQLVNG---ID---EDM 75 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHHHHBTCBB--CHHHHHHHHHCSCEEESSC---EEEESBTT---CE---EEE
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChhhcCCCcc--CHHHHHHHHcCCEEEEcCC---ccccccCC---CC---CCe
Confidence 4678889999 999999999886 77521 12344 4456677777666544221 22222211 00 124
Q ss_pred ceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHhhhccccc
Q 023083 227 CSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 227 qsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
.+.++.||-.+ .++-|+|.+-+ ..+.+++.++.-.+++|+=|...++
T Consensus 76 ~s~ii~PI~~~--------g~viG~i~l~~-~~~~~~~~~~~la~gla~lls~Qme 122 (123)
T 2w1r_A 76 NSYTVGPIVAN--------GDPIGAVVIFS-KDQTMGEVEHKAVETAAGFLARQME 122 (123)
T ss_dssp SEEEEEEEEET--------TEEEEEEEEEE-SSSCCCHHHHHHHHHHHHHHC----
T ss_pred eEEEEEEEEEC--------CEEEEEEEEEE-cCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 78899998763 24568888884 4445999999999999998876543
No 29
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=61.07 E-value=1.7 Score=44.78 Aligned_cols=85 Identities=14% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccccCCCcccccCCccccccccCC---CCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-----
Q 023083 188 LLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLP---KGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT----- 259 (287)
Q Consensus 188 i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP---~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~----- 259 (287)
++.++.++++...+.|..+...|+...+ .... .++++++|.||-.+ + ..+.-|||.+....+
T Consensus 414 i~g~v~~~g~~v~i~D~~~d~r~~~~~~----~~~g~~~~~~rS~L~vPL~~~-----~-~g~viGVL~l~~~~~~~~G~ 483 (878)
T 3bjc_A 414 YAQYVKNTMEPLNIPDVSKDKRFPWTTE----NTGNVNQQCIRSLLCTPIKNG-----K-KNKVIGVCQLVNKMEENTGK 483 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhcCCeeeecCcccccccccccc----cccCccccccceEEEEEEecC-----C-CCcEEEEEEEEEcCCCcccC
Confidence 4555666666555544433333332222 0011 35899999999762 0 023469999987666
Q ss_pred -cccchhhHHHHHHHHhhhccccc
Q 023083 260 -YAYSHKDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 260 -RafT~kDe~WI~~iA~KL~~~~~ 282 (287)
|.||+.|+..++.+|+-+..+.+
T Consensus 484 ~~~Ft~~d~~lL~~lA~~aaiAIe 507 (878)
T 3bjc_A 484 VKPFNRNDEQFLEAFVIFCGLGIQ 507 (878)
T ss_dssp ------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999988776654
No 30
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=54.64 E-value=12 Score=32.86 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhcccccCCCcccccCCccccccc-cCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccchh
Q 023083 188 LLEWFERQIENIGLSDLKDSLYFPQSADAGQWE-MLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSHK 265 (287)
Q Consensus 188 i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~-~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-RafT~k 265 (287)
++.++.+..+...+-|..+. |- .+ ++ ..-.+.+++++.||-.+ ...+.-|+|.+.+..+ +.||+.
T Consensus 82 ~~g~~~~~~~~~~i~d~~~~---~~-~~---~~~~~~~~~~s~l~vPl~~~------~~~~~~Gvl~l~~~~~~~~f~~~ 148 (368)
T 1mc0_A 82 RLGQVVEDKQCIQLKDLTSD---DV-QQ---LQNMLGCELQAMLCVPVISR------ATDQVVALACAFNKLGGDFFTDE 148 (368)
T ss_dssp SHHHHHHHCCCEEGGGSCHH---HH-HH---HHHHHCSCCCCEEEEEEECT------TTCSEEEEEEEEEESSCSSCCSH
T ss_pred HHHHHHhcCCeEEecccccc---cc-cc---cccccCcccceEEEEEeecC------CCCcEEEEEEeecCCCCCCCCHH
Confidence 55677777777666555311 11 11 01 11124899999999752 0123469998776655 569999
Q ss_pred hHHHHHHHHhhhccc
Q 023083 266 DRAWIKAVSNKFRGK 280 (287)
Q Consensus 266 De~WI~~iA~KL~~~ 280 (287)
|+.-+..+|+-+..+
T Consensus 149 d~~~l~~la~~~~~a 163 (368)
T 1mc0_A 149 DEHVIQHCFHYTGTV 163 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766543
No 31
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=53.81 E-value=2.7 Score=43.33 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc---ccch
Q 023083 188 LLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY---AYSH 264 (287)
Q Consensus 188 i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R---afT~ 264 (287)
++.++.++.+...+-|..+...|+...+ ...-.++++++|.||-.. ..+.-|+|.+.+..++ .||+
T Consensus 232 i~g~v~~~g~pv~I~D~~~dp~f~~~~~----~~~~~~~~S~L~vPL~~~-------~g~viGvL~l~~~~~~~~~~ft~ 300 (878)
T 3bjc_A 232 IVGHVAALGEPLNIKDAYEDPRFNAEVD----QITGYKTQSILCMPIKNH-------REEVVGVAQAINKKSGNGGTFTE 300 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCceEEeCCcccCcccccccc----cccCCccceEEEEeeEcC-------CCCEEEEEEEEecCCCCCCCCCH
Confidence 5667777777666555543333333322 011235889999999651 1234799999987765 9999
Q ss_pred hhHHHHHHHHhhhccccc
Q 023083 265 KDRAWIKAVSNKFRGKSI 282 (287)
Q Consensus 265 kDe~WI~~iA~KL~~~~~ 282 (287)
.|+.-++.+|+-+..+++
T Consensus 301 ~D~~lL~~lA~~~a~AL~ 318 (878)
T 3bjc_A 301 KDEKDFAAYLAFCGIVLH 318 (878)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999987776654
No 32
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=46.30 E-value=5.8 Score=27.52 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHH
Q 023083 140 SDALKENLAWAT 151 (287)
Q Consensus 140 sd~~k~ELAWaS 151 (287)
+|..|+||||--
T Consensus 10 ~D~aqEEMAWqI 21 (45)
T 3im4_C 10 TDEAQEELAWKI 21 (45)
T ss_dssp -CHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 688999999953
No 33
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=45.85 E-value=29 Score=32.34 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHhhhccccEEEEEECCEEEEeeeecC--CC------CCChHHHHHHHHHhhhhcccccCCCc--ccccC
Q 023083 152 YVLLRNTNSISVLISIRGELCVRGYWQT--PD------GASKTQLLEWFERQIENIGLSDLKDS--LYFPQ 212 (287)
Q Consensus 152 ~~LLtnT~a~svlV~~~g~ll~RG~~~~--p~------~~~~g~i~~~~~~~~~~~~Lv~L~~t--~lyPg 212 (287)
...|..|.|.++||..+|+++.-.|.+. ++ .++|.-+---++...++..| +|-+. .|+|.
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~Y~~~~~~dt~~~i~SvtKs~ta~~i~~lve~G~l-~ldd~v~~ylPe 171 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYERYFNGYNESEPHGMASLAKVFTGAIIQSLAEENRI-DLEKTADTYIKE 171 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEECTTCCTTSCEECGGGGHHHHHHHHHHHHHTTSS-CTTSBHHHHCGG
T ss_pred HHHHHhcCCCEEEEEECCEEEEEeCCCCCCCCCeeeeeeccHHHHHHHHHHHHHcCCc-ccCcchhccCcc
Confidence 4566889999999999999887556542 21 34554333345555555544 77543 46665
No 34
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=35.19 E-value=16 Score=36.30 Aligned_cols=81 Identities=15% Similarity=0.116 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCC-ccccchh
Q 023083 187 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSM-TYAYSHK 265 (287)
Q Consensus 187 ~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s-~RafT~k 265 (287)
.++.++.++.++..+-|..+ -|.+.. .......+++++|.||..+ ...+.-|+|.+.... ++.||+.
T Consensus 81 Gi~g~v~~~~~pv~i~d~~~---~~~~~~---~~~~~~~~~S~L~vPI~~~------~~g~viGvL~l~~~~~~~~ft~~ 148 (691)
T 3ibj_A 81 GCLGQVVEDKKSIQLKDLTS---EDVQQL---QSMLGCELQAMLCVPVISR------ATDQVVALACAFNKLEGDLFTDE 148 (691)
T ss_dssp SSSHHHHHHCCCEEGGGSCH---HHHHHH---HHHHTSCCSCEEEEEEECS------SSCSEEEEEEEESBSSSCCCCTT
T ss_pred cHHHHHHHHCCeEEeccchh---cccccc---ccccCCccceEEEEEeEcC------CCCcEEEEEEEEcCCCCCCCCHH
Confidence 36677888888876666532 121111 1112234899999999761 012346998877654 4689999
Q ss_pred hHHHHHHHHhhhcc
Q 023083 266 DRAWIKAVSNKFRG 279 (287)
Q Consensus 266 De~WI~~iA~KL~~ 279 (287)
|+.-++.+|.-+..
T Consensus 149 d~~lL~~la~~~a~ 162 (691)
T 3ibj_A 149 DEHVIQHCFHYTST 162 (691)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988765543
No 35
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=31.24 E-value=64 Score=31.96 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=52.9
Q ss_pred HHHHHHhhhccccEEEEEECCEEEEeeeecCCCCCChHHHHHHHHHhhhhcccc--cCCCcccccCCccccccccCCCCC
Q 023083 149 WATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIENIGLS--DLKDSLYFPQSADAGQWEMLPKGT 226 (287)
Q Consensus 149 WaS~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~~~~~~~~~~~Lv--~L~~t~lyPgr~E~~~~~~LP~nt 226 (287)
-.+..|+.-..|.++.+|++|++..-|.. |+.-.-..+.+|+.+......+. +|. ..||+-.+ | .+-.
T Consensus 354 ~~~~~ll~l~~adG~al~~~~~~~~~G~~--P~~~~i~~l~~wl~~~~~~~v~~Td~L~--~~~p~a~~--~----~~~a 423 (520)
T 3zq5_A 354 NHPDRLLGLTGSQGAAICFGEKLILVGET--PDEKAVQYLLQWLENREVQDVFFTSSLS--QIYPDAVN--F----KSVA 423 (520)
T ss_dssp TCHHHHHHTTTCSEEEEEETTEEEEEESC--CCHHHHHHHHHHHHHSCCCSCEEESCGG--GTSGGGGG--G----HHHH
T ss_pred hccHHHHhhhcCCeEEEEECCEEEEcCCC--CCHHHHHHHHHHHHhcCCCCeeEecchh--hhCcchhh--c----cccc
Confidence 45788999999999999999998888865 34334456778887665532222 222 24666544 1 2345
Q ss_pred ceeEEEeccC
Q 023083 227 CSVFVQPVIQ 236 (287)
Q Consensus 227 qsVlvQPig~ 236 (287)
.||++.||..
T Consensus 424 ~G~lai~ls~ 433 (520)
T 3zq5_A 424 SGLLAIPIAR 433 (520)
T ss_dssp SEEEEEEETT
T ss_pred ceEEEEEeCC
Confidence 7899999865
No 36
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=21.34 E-value=79 Score=31.16 Aligned_cols=80 Identities=14% Similarity=0.052 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhccccEEEEEECCEEEEeeeecCCCCCChHHHHHHHHHhhhhcccccCCCcccccCCccccccccCCCCC
Q 023083 147 LAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGT 226 (287)
Q Consensus 147 LAWaS~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~~~~~~~~~~~Lv~L~~t~lyPgr~E~~~~~~LP~nt 226 (287)
|.-.+..|+.-..|.+++||++|++...|.. |+.-.-..+.+|+.+...+. +.. + .||+-.+ ...+.+..
T Consensus 339 l~~~~~~l~~ll~adg~al~~~~~~~~~G~~--P~~~~i~~l~~wl~~~~~~v-~~T--d--~~p~a~~---~~~~~~~~ 408 (505)
T 3nhq_A 339 LAHPDDGIAALIPCDGALVMLGGRTLSIRGD--FERQAGNVLQRLQRDPERDI-YHT--D--NWPQPSE---DSPDGGDC 408 (505)
T ss_dssp HHCTTTSHHHHTTCSEEEEEETTEEEEESSC--CHHHHHHHHHHHHTCTTCSE-EEE--S--CC--------------CC
T ss_pred HHHhhHHHHHHhCCCeEEEEECCeEEecCCC--CCHHHHHHHHHHHHhcCCCe-EEe--C--CCcchhh---cccccccc
Confidence 3444666778889999999999998888865 33323345666765544441 111 1 6775332 11135788
Q ss_pred ceeEEEeccC
Q 023083 227 CSVFVQPVIQ 236 (287)
Q Consensus 227 qsVlvQPig~ 236 (287)
.||++.||.+
T Consensus 409 ~G~lai~ls~ 418 (505)
T 3nhq_A 409 CGVLAIRFHR 418 (505)
T ss_dssp CEEEEEEEET
T ss_pred ceEEEEEecC
Confidence 9999999975
Done!