BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023084
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain
BP-1) GN=trpS PE=3 SV=1
Length = 330
Score = 266 bits (681), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 129/204 (63%), Positives = 154/204 (75%), Gaps = 9/204 (4%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
++SGVQPTGS+HLGNYLGAI+NW+A Q YE F +VDLHAIT+P+D +L+ T AA
Sbjct: 1 MLSGVQPTGSLHLGNYLGAIRNWVAGQAEYENYFCVVDLHAITVPHDPAELAANTYTVAA 60
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID + A++FVQSHV AH EL WLL+ TP+ WL MIQFKEK+ K GENV
Sbjct: 61 LYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ-GENVAAG 119
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+ + I
Sbjct: 120 LLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ--------PPIL 171
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
K+PEPLIP AGARVMSLTDG K+
Sbjct: 172 KLPEPLIPKAGARVMSLTDGTKKM 195
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=trpS PE=3 SV=1
Length = 339
Score = 254 bits (649), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 156/208 (75%), Gaps = 10/208 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR++SGVQPTG+IH+GN+LGAI+NW++LQN Y+T +VDLHAIT+P+D QQL + T
Sbjct: 3 KKRVLSGVQPTGAIHIGNWLGAIRNWVSLQNEYDTYVCVVDLHAITVPHDPQQLKENTLR 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+Y+ACG+D K S+FVQSH+ AH EL WLL+ TP+ W+ +MIQFKEK+ K G+NV
Sbjct: 63 TAALYVACGMDPKKCSIFVQSHISAHSELCWLLNCVTPLNWMERMIQFKEKAIKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
+ LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +RVN +
Sbjct: 122 SIGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRVN--------SRFNKES 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
+I K+P+PLI G ++MSL DG K+
Sbjct: 174 KSILKIPKPLIMKEGGKIMSLIDGNMKM 201
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=trpS PE=3 SV=1
Length = 335
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/207 (58%), Positives = 152/207 (73%), Gaps = 10/207 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K+R++SGVQPTG++HLGNYLGAI+NW+ +Q+ Y+ F +VDLHAIT+P++ L+ T
Sbjct: 3 KQRVLSGVQPTGNLHLGNYLGAIRNWVEIQDQYDNFFCVVDLHAITVPHNPATLAADTYA 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
AA+YLACGID +++FVQSHV AH EL W L+ TP+ WL MIQFKEK+ K GENV
Sbjct: 63 IAALYLACGIDLKYSNIFVQSHVSAHSELAWFLNCITPLNWLQDMIQFKEKAVKQ-GENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
G LL YPVLMA+DILLYQ+D VPVGEDQKQHLELTR++ R N+ + K
Sbjct: 122 GAGLLIYPVLMAADILLYQADKVPVGEDQKQHLELTRDIVNRFNHQFAKDK--------- 172
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
+ K+PEPLI GARVMSLTDG K+
Sbjct: 173 PVMKLPEPLIRKEGARVMSLTDGTRKM 199
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=trpS PE=3 SV=2
Length = 337
Score = 251 bits (641), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 122/207 (58%), Positives = 151/207 (72%), Gaps = 9/207 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K RI+SGVQPTG++HLGNYLGAI++W+ Q Y+ F +VDLHAIT+P++ Q L++ T
Sbjct: 3 KPRILSGVQPTGNLHLGNYLGAIRSWVEQQQHYDNFFCVVDLHAITVPHNPQTLAQDTLT 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
AA+YLACGID +++FVQSHV AH EL WLL+ TP+ WL +MIQFKEK+ K GENV
Sbjct: 63 IAALYLACGIDLQYSTIFVQSHVAAHSELAWLLNCVTPLNWLERMIQFKEKAVKQ-GENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++ R+N K G
Sbjct: 122 SVGLLDYPVLMAADILLYDADKVPVGEDQKQHLELTRDIVIRIN--------DKFGREDA 173
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
+ K+PEPLI GARVMSL DG K+
Sbjct: 174 PVLKLPEPLIRKEGARVMSLADGTKKM 200
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102)
GN=trpS PE=3 SV=1
Length = 337
Score = 250 bits (638), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 119/208 (57%), Positives = 157/208 (75%), Gaps = 10/208 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ++++T +VDLHAIT+P+D +L+ T
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQDTHDTFVCVVDLHAITVPHDPARLADDTLN 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+YLACG+D + S+F+QS V AH EL WLL+ TP+ WL +MIQFKEK+ K G+NV
Sbjct: 63 TAALYLACGMDPQRCSIFIQSQVAAHSELCWLLNCVTPLNWLERMIQFKEKAVKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
+ KVP+PLI GARVMSLTDG SK+
Sbjct: 174 RPVLKVPKPLILKEGARVMSLTDGRSKM 201
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT
9313) GN=trpS PE=3 SV=1
Length = 337
Score = 249 bits (636), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/208 (57%), Positives = 158/208 (75%), Gaps = 10/208 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ R++SGVQPTG++HLGN+LGAI+NW+ LQ+S++T +VDLHAIT+P+D ++L++ +
Sbjct: 3 RPRVLSGVQPTGALHLGNWLGAIRNWVDLQSSHDTYVCVVDLHAITVPHDPERLAEESLS 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+YLACG+D S+FVQS V AH EL WLL+ TP+ WL +MIQFKEKS K G+NV
Sbjct: 63 TAALYLACGMDPDLCSIFVQSQVSAHSELCWLLNCVTPLNWLERMIQFKEKSVKQ-GDNV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
V LL YPVLMA+DILLY +D VPVGEDQKQHLEL R++A +R+N +G +
Sbjct: 122 SVGLLDYPVLMAADILLYDADLVPVGEDQKQHLELARDIAQQRINARFGSEE-------- 173
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
+ KVP+PLI GARVMSL+DG SK+
Sbjct: 174 KPVLKVPDPLIIKEGARVMSLSDGRSKM 201
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=trpS PE=3 SV=1
Length = 336
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/214 (56%), Positives = 150/214 (70%), Gaps = 13/214 (6%)
Query: 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQ 130
+ S+ KRI+SG QPTG +HLGNYLGA++NW++ Q Y++ F +VDLHA+T+P + +
Sbjct: 1 MPDDSTAPKRILSGAQPTGQLHLGNYLGAVRNWVSEQRQYDSYFCVVDLHALTVPQEAAE 60
Query: 131 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
L ATR TAA+YLACGID +++VFVQSHV AH EL WL + TPI WL +MIQFKEK+
Sbjct: 61 LRAATRRTAALYLACGIDPERSTVFVQSHVSAHTELTWLFNCLTPINWLERMIQFKEKAI 120
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
K GE VG+ L YPVL A+DILLY+ VPVGEDQ+QHLELTR++A R N Y
Sbjct: 121 KL-GEEVGIGLFDYPVLQAADILLYEPHLVPVGEDQRQHLELTRDIARRFNDRY------ 173
Query: 251 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
G +VPE LI GARVMSL DG SK+
Sbjct: 174 ------GESLRVPEMLIRKEGARVMSLQDGTSKM 201
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=trpS PE=3 SV=1
Length = 338
Score = 244 bits (623), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 151/208 (72%), Gaps = 11/208 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKRI+SGVQPTG +H+GN+LGAI NW+ LQ +ET +VDLHAIT YDT+QLSK T
Sbjct: 4 KKRILSGVQPTGDLHIGNWLGAINNWVELQEKHETFLCVVDLHAITTEYDTKQLSKNTLS 63
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
TAA+Y+ACGI+ S+FVQS + AH EL W+L+ TPI W+ +MIQFKEKS + G NV
Sbjct: 64 TAALYIACGINPKICSIFVQSQISAHSELCWILNCMTPINWMERMIQFKEKSIQQGN-NV 122
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA-ERVNYLYGGRKWKKLGGRG 256
+ L YP+LMA+DILLY +D+VPVGEDQKQHLEL +++A +R+N +G +
Sbjct: 123 SIGLFDYPILMAADILLYDADYVPVGEDQKQHLELAKDIAQQRINAKFGKEE-------- 174
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
I K+P+P+I G+++MSL DG K+
Sbjct: 175 -NILKIPQPIIMKKGSKIMSLNDGSKKM 201
>sp|Q7MAE0|SYW_WOLSU Tryptophan--tRNA ligase OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=trpS PE=3 SV=1
Length = 328
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 142/208 (68%), Gaps = 13/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KKR+ SG+QPTG+IHLGNYLGA+KNW+ Q+ ++ +F IV+ HAIT+ D L T
Sbjct: 2 IKKRVFSGIQPTGNIHLGNYLGAVKNWVDSQDEFDNIFCIVNSHAITIKQDPALLRAKTY 61
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AA+ LACGID K+ +F+QS V H L W+L P+G +++M QFK+KS K +N
Sbjct: 62 ELAAVLLACGIDMKKSKLFIQSEVDEHAALAWILDCNIPMGDMSRMTQFKDKSQK-NPKN 120
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ + L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++AER N Y
Sbjct: 121 INIGLFNYPALMAADILLYQTDFVPVGEDQKQHLELTRDVAERFNRDY------------ 168
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
G FK+PEP+IP GAR+M L D K+
Sbjct: 169 GETFKIPEPMIPKMGARIMGLDDPTKKM 196
>sp|Q7VIP6|SYW_HELHP Tryptophan--tRNA ligase OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=trpS PE=3 SV=1
Length = 332
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/212 (52%), Positives = 144/212 (67%), Gaps = 13/212 (6%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S +S KKRI SG+QPTG+IHLGNYLGA+++W+ Q YE +F +V+ HAIT+ D Q+L
Sbjct: 2 SHTSSKKRIFSGIQPTGNIHLGNYLGAVRHWVDSQEQYENIFCVVNSHAITIRQDPQELQ 61
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
T E A I LACGID K+ +F+QS + H L W+L P+G +++M QFK+KS+K
Sbjct: 62 NKTYELAGILLACGIDTKKSHLFIQSQIDEHAALAWILDCNIPMGDMSRMTQFKDKSNK- 120
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
+N+ V L YP LMA+DILLYQ+DFVPVGEDQKQHLELTR++A R N Y
Sbjct: 121 NPKNINVGLFNYPALMAADILLYQADFVPVGEDQKQHLELTRDVAMRFNRDY-------- 172
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
G F +PEP+IP GARVM L + SK+
Sbjct: 173 ----GECFNIPEPMIPQVGARVMGLDNPQSKM 200
>sp|P57956|SYW_PASMU Tryptophan--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=trpS PE=3 SV=1
Length = 333
Score = 230 bits (587), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 111/207 (53%), Positives = 146/207 (70%), Gaps = 13/207 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K ++SGVQP+G + +GNYLGA++ W+ +Q+ YE LF IVDLHAIT+ D + L KAT +
Sbjct: 3 KPVVLSGVQPSGELTIGNYLGALRQWVKMQDDYECLFCIVDLHAITVRQDPESLRKATLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+YLACGID K+++F+QSHV H +L W+L+ T G + +M QFK+KS + EN+
Sbjct: 63 VLALYLACGIDPEKSTIFIQSHVPEHTQLAWVLNCYTYFGEMGRMTQFKDKSAR-HAENI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L TYPVLMA+DILLYQ++ VPVGEDQKQHLE+TR++A R N LYG
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGEDQKQHLEITRDIANRFNALYGD----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
+F VPEP IP AGARVMSL + K+
Sbjct: 171 -LFAVPEPFIPKAGARVMSLLEPEKKM 196
>sp|Q8R9X8|SYW_THETN Tryptophan--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=trpS PE=3
SV=1
Length = 327
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/206 (54%), Positives = 145/206 (70%), Gaps = 14/206 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
KR+ SGVQP+G IH+GNYLGA++ ++ALQ+ Y+ F +VDLHA+T+P D +L K T E
Sbjct: 2 KRVFSGVQPSGDIHIGNYLGAMRQFVALQDDYDCFFCVVDLHALTVPQDPVELKKNTIEL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+Y+A G+D K ++FVQSHV AH EL WLL T G L++M QFKEKS G E+V
Sbjct: 62 AALYMAIGLDPKKVTLFVQSHVSAHAELAWLLQCITYFGELSRMTQFKEKSK--GKESVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
V L TYP LMA+DILLY++ +VPVGEDQKQHLELTR++A+R N R G
Sbjct: 120 VGLFTYPDLMAADILLYKTHYVPVGEDQKQHLELTRDVAQRFN------------NRFGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
F +PEP+I GAR+MSLT+ K+
Sbjct: 168 TFVIPEPMILKFGARIMSLTNPTKKM 193
>sp|P0A2P2|SYW_SALTY Tryptophan--tRNA ligase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=trpS PE=3 SV=1
Length = 334
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|P0A2P3|SYW_SALTI Tryptophan--tRNA ligase OS=Salmonella typhi GN=trpS PE=3 SV=1
Length = 334
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQQLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNGLYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|P67588|SYW_ECOL6 Tryptophan--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=trpS PE=3 SV=1
Length = 334
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|P67589|SYW_ECO57 Tryptophan--tRNA ligase OS=Escherichia coli O157:H7 GN=trpS PE=3
SV=1
Length = 334
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|P00954|SYW_ECOLI Tryptophan--tRNA ligase OS=Escherichia coli (strain K12) GN=trpS
PE=1 SV=3
Length = 334
Score = 224 bits (572), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G IF
Sbjct: 125 LFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------GEIF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|Q83JA5|SYW_SHIFL Tryptophan--tRNA ligase OS=Shigella flexneri GN=trpS PE=3 SV=1
Length = 334
Score = 224 bits (571), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D Q+L KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDAQKLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N LY G IF
Sbjct: 125 LFGYPVLMAADILLYQTNLVPVGEDQKQHLELSRDIAQRFNALY------------GEIF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|Q8ZJF2|SYW_YERPE Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2
Length = 342
Score = 224 bits (570), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 147/221 (66%), Gaps = 19/221 (8%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
LS+PT S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 3 LSKPTV------SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 56
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 57 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 116
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 117 QFKDKSARY-AENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 175
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
YG IFK+PEP IP AGARVMSL D K+
Sbjct: 176 YGD------------IFKIPEPFIPKAGARVMSLQDPTKKM 204
>sp|Q9EYY6|SYW_ENTAE Tryptophan--tRNA ligase OS=Enterobacter aerogenes GN=trpS PE=3 SV=1
Length = 334
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SG QP+G + +GNY+GA++ W+ +Q+ Y ++ IVD HAIT+ D QQL KAT +T A
Sbjct: 6 VFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQHAITVRQDPQQLRKATLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID K+++FVQSHV H +L W L+ T G L++M QFK+KS + EN+
Sbjct: 66 LYLACGIDPQKSTIFVQSHVPEHAQLGWALNCYTYFGELSRMTQFKDKSARY-AENINAG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A+R N +YG IF
Sbjct: 125 LFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIAQRFNAIYGD------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
KVPEP IP +GARVMSL + K+
Sbjct: 173 KVPEPFIPKSGARVMSLLEPTKKM 196
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E)
GN=trpS PE=3 SV=1
Length = 330
Score = 224 bits (570), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 145/208 (69%), Gaps = 12/208 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TG++HLGNYLG+I+NWI +Q Y FF+ DLHAIT+ T +L+ A
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIRNWIKMQEEYNCFFFLADLHAITIDIKTSELNDAIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AIYLA G++ K ++F QS V+ HVEL WLL+ TP+GWL +M QFK+K+ A +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHVELSWLLNCVTPLGWLKRMTQFKDKAGSAQCK- 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 120 ACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
I KVP+ LI G R+MSL +GL K+
Sbjct: 170 -EILKVPDILISETGTRIMSLRNGLKKM 196
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=trpS PE=3 SV=1
Length = 330
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 143/208 (68%), Gaps = 12/208 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLGAIKNW+ +Q Y FF+ DLHAIT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGAIKNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 EVLAVYLAAGLNPDKVTIFAQSMVKEHTELAWLLNCVTPLGWLKRMTQFKDKAG-SDQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
I KVPE LI G R+MSL DGL K+
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKM 196
>sp|P56396|SYW_HELPY Tryptophan--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=trpS PE=3 SV=2
Length = 326
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 135/202 (66%), Gaps = 13/202 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ +Q+ YE LF +V+ HAITLP D L + E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVEMQDEYENLFCVVNSHAITLPIDPAFLKSQSYE 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
+ LACGID ++ +F+QS V H L WLL+ +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGIDPKQSGLFIQSEVDEHPALAWLLNCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNIAEKFNRDFGN----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTD 279
FKVPEPLI GARVM L D
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDD 191
>sp|Q68WR2|SYW_RICTY Tryptophan--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=trpS PE=3 SV=1
Length = 330
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 144/210 (68%), Gaps = 16/210 (7%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TG++HLGNYLG+IKNW+ +Q Y FF+ DLHAIT+ T +L+ +
Sbjct: 1 MKKTVLSGVQTTGALHLGNYLGSIKNWVKMQEEYNCFFFLADLHAITIDIKTSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
E AIYLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+ KAG +
Sbjct: 61 EVLAIYLAAGLNPDKVTIFAQSMVKEHAELSWLLNCVTPLGWLKRMTQFKD---KAGSDQ 117
Query: 197 VG--VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
+ L YP+LMA+DIL+Y++D VPVGEDQKQHLELTR++AE +N R++ K
Sbjct: 118 CKACLGLFAYPILMAADILIYKADIVPVGEDQKQHLELTRDIAEVIN-----RRFDK--- 169
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
I KVP+ LI G R+MSL +GL K+
Sbjct: 170 ---EILKVPDILISETGTRIMSLRNGLKKM 196
>sp|Q1RIE3|SYW_RICBR Tryptophan--tRNA ligase OS=Rickettsia bellii (strain RML369-C)
GN=trpS PE=3 SV=1
Length = 328
Score = 220 bits (561), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 143/204 (70%), Gaps = 12/204 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLH+IT+ +L ++
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHSITVDIAPSELKRSVI 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
ET AIYLA G+D +K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ K E
Sbjct: 61 ETLAIYLAAGLDPNKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKAGK-DQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N RK+ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RKFNK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDG 280
I KVPE LI +G R+MSL DG
Sbjct: 170 -EILKVPEVLIGGSGTRIMSLRDG 192
>sp|P43835|SYW_HAEIN Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=trpS PE=3 SV=1
Length = 334
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/204 (51%), Positives = 141/204 (69%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
+ SGVQP+G + +GNYLGA++NW+ +Q YE +F +VDLHAIT+ D L KAT + A
Sbjct: 6 VFSGVQPSGELTIGNYLGALRNWVKMQEDYECIFCVVDLHAITVRQDPVALRKATLDVLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACGID +K+++FVQSHV H +L W+L+ T G +++M QFK+KS + EN+ V
Sbjct: 66 LYLACGIDPNKSTIFVQSHVPEHTQLSWVLNCYTYFGEMSRMTQFKDKSARY-AENINVG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ+ VPVG+DQKQHLE+TR++A R N LYG IF
Sbjct: 125 LFDYPVLMAADILLYQAKSVPVGDDQKQHLEITRDIANRFNALYGN------------IF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
+PE I AGAR+MSL D K+
Sbjct: 173 TIPEIFIGKAGARIMSLQDPEKKM 196
>sp|Q7VPB2|SYW_HAEDU Tryptophan--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=trpS PE=3 SV=1
Length = 342
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 146/207 (70%), Gaps = 3/207 (1%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K + SGVQP+G + +GNYLGA++NW+ LQ+ Y+ LF IVDLHAIT+ D L K+T +
Sbjct: 3 KSIVFSGVQPSGELTIGNYLGALRNWVTLQDDYDCLFCIVDLHAITVRQDPIALRKSTLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+YLACGID +K+++F+QS V H +L W+L+ T G + +M QFK+KS + ENV
Sbjct: 63 VLALYLACGIDPNKSTIFIQSQVPEHSQLAWVLNCYTYFGEMGRMTQFKDKSARY-EENV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L TYPVLMA+DILLYQ++ VPVG+DQKQHLE+TR++A R N LYG + + G
Sbjct: 122 NVGLFTYPVLMAADILLYQANQVPVGDDQKQHLEITRDIANRFNTLYGKKDAE--GKLIE 179
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
++F VPE I A ARVMSL + K+
Sbjct: 180 SVFTVPECFIAKACARVMSLLEPTKKM 206
>sp|Q891C7|SYW_CLOTE Tryptophan--tRNA ligase OS=Clostridium tetani (strain Massachusetts
/ E88) GN=trpS PE=3 SV=1
Length = 338
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/207 (52%), Positives = 138/207 (66%), Gaps = 13/207 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KK I SG+QP+G++ +GNY GA+KNW+ LQ+ Y + IVDLHAIT+ Q+L K T E
Sbjct: 10 KKTIFSGIQPSGNLTIGNYFGALKNWVKLQDEYNCFYCIVDLHAITVRQVPQELRKRTLE 69
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A+Y+A G+D K ++F+QSHV AH E WLL+ T +G LN+M QFK+KS A GE++
Sbjct: 70 VLAVYIASGLDPEKNTLFIQSHVPAHTEAAWLLNCFTYLGELNRMTQFKDKSQNA-GESI 128
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
LL YPVLMA+DILLY +D VPVG DQKQHLELTR++A R N LY
Sbjct: 129 SAGLLNYPVLMAADILLYNADLVPVGNDQKQHLELTRDIATRFNNLY------------S 176
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
FKVPEP I GAR+M L + K+
Sbjct: 177 PTFKVPEPYIGKTGARIMDLQEPKKKM 203
>sp|Q9ZJX4|SYW_HELPJ Tryptophan--tRNA ligase OS=Helicobacter pylori (strain J99) GN=trpS
PE=3 SV=1
Length = 326
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/202 (54%), Positives = 133/202 (65%), Gaps = 13/202 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KKR+ SG+QPTG IHLGNYLGAIK+W+ LQ+ YE LF IV+ HAITLP + L T E
Sbjct: 3 KKRVFSGIQPTGQIHLGNYLGAIKHWVELQDEYENLFCIVNSHAITLPIEPIFLKSQTYE 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
+ LACGI ++ +F+QS V H L WLL +G + +M QFK+KS K ++V
Sbjct: 63 LVKLLLACGISPKQSGLFIQSEVDEHPALAWLLDCQVSMGEMQRMTQFKDKSLK-NPKSV 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YP+LMASDILLYQSD VPVGEDQKQHLELTR +AE+ N +G
Sbjct: 122 NVGLFNYPILMASDILLYQSDLVPVGEDQKQHLELTRNVAEKFNRDFGN----------- 170
Query: 258 AIFKVPEPLIPPAGARVMSLTD 279
FKVPEPLI GARVM L D
Sbjct: 171 -CFKVPEPLIAKVGARVMGLDD 191
>sp|Q4UL98|SYW_RICFE Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=trpS PE=3 SV=1
Length = 330
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 142/208 (68%), Gaps = 12/208 (5%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK ++SGVQ TGS+HLGNYLG+I+NW+ +Q Y FF+ DLHAIT+ +L+ +
Sbjct: 1 MKKTVLSGVQATGSLHLGNYLGSIRNWVKMQEEYNCFFFLADLHAITVDIKPSELNNSIM 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
A+YLA G++ K ++F QS V+ H EL WLL+ TP+GWL +M QFK+K+ + E
Sbjct: 61 GVLAVYLAAGLNPDKVTIFAQSMVKEHAELAWLLNCVTPLGWLKRMTQFKDKAG-SDQEK 119
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
+ L +YPVLMA+DIL+Y++D VPVGEDQKQHLELTR++A +N R++ K
Sbjct: 120 ACLGLFSYPVLMAADILIYKADIVPVGEDQKQHLELTRDIAGVIN-----RRFDK----- 169
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
I KVPE LI G R+MSL DGL K+
Sbjct: 170 -EILKVPEVLISETGTRIMSLRDGLKKM 196
>sp|Q7NA61|SYW_PHOLL Tryptophan--tRNA ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=trpS PE=3 SV=1
Length = 345
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/222 (48%), Positives = 152/222 (68%), Gaps = 16/222 (7%)
Query: 64 LSEPTAPVASSSSVKKRIV-SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAI 122
++EPT V+ + + +K IV SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVD HAI
Sbjct: 1 MNEPT--VSETLNSQKPIVFSGAQPSGELTIGNYMGALRQWVKMQDDYDCIYCIVDQHAI 58
Query: 123 TLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM 182
T+ D ++L K T +T A+YLACGID K+++FVQSHV H +L W+L+ T G L++M
Sbjct: 59 TVRQDPKELRKRTLDTLALYLACGIDPEKSTIFVQSHVPQHAQLSWILNCYTYFGELSRM 118
Query: 183 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
QFK+KS + EN+ L YPVLM +DIL+YQ++ VPVG DQKQHLEL+R++A+R N
Sbjct: 119 TQFKDKSAR-HAENINAGLFDYPVLMTADILVYQTNQVPVGIDQKQHLELSRDIAQRFNA 177
Query: 243 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
+YG IF VPEP IP GARVM+L D K+
Sbjct: 178 IYGN------------IFAVPEPFIPTGGARVMALQDPEKKM 207
>sp|Q9K8Y2|SYW_BACHD Tryptophan--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=trpS PE=3
SV=1
Length = 330
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 141/208 (67%), Gaps = 14/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK + SG+QP+G++ LGNYLGA+K++++LQ Y F IVD HAIT+P D +L + R
Sbjct: 1 MKKTVFSGIQPSGTLTLGNYLGAMKHFVSLQEDYNCYFCIVDQHAITVPQDRLKLRENIR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA GID SKA++F+QS V AH +L W++ + IG L +M QFK+KS G E
Sbjct: 61 SLAALYLAVGIDPSKATLFIQSEVPAHAQLGWMMQCVSYIGELERMTQFKDKSD--GKEA 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V +LLTYP LMA+DILLY ++ VPVGEDQKQHLELTR+LAER N Y
Sbjct: 119 VSASLLTYPPLMAADILLYHTNIVPVGEDQKQHLELTRDLAERFNKKYND---------- 168
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
IF +PE IP GAR+MSL D K+
Sbjct: 169 --IFTIPEVQIPKVGARIMSLNDPSKKM 194
>sp|Q8EK12|SYW_SHEON Tryptophan--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=trpS PE=3 SV=1
Length = 332
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 102/204 (50%), Positives = 142/204 (69%), Gaps = 13/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
++SG QP+G + +GNY+GA++ W+A+Q+S++ L+ +VDLHAIT+ D Q L +A +T A
Sbjct: 6 VLSGAQPSGELTIGNYMGALRQWVAMQDSHDCLYCVVDLHAITVRQDPQALREACLDTLA 65
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+YLACG+D K++VF+QS V H +L W L+ T +G L++M QFK+KS K N+ V
Sbjct: 66 LYLACGVDPKKSTVFIQSQVPQHTQLGWALNCYTQMGELSRMTQFKDKSQKHAN-NINVG 124
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
L YPVLMA+DILLYQ++ +PVG+DQKQHLELTR++A R N Y G F
Sbjct: 125 LFGYPVLMAADILLYQANEIPVGQDQKQHLELTRDIATRFNNAY------------GETF 172
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
+PEP IP GA+VMSL D L K+
Sbjct: 173 TIPEPFIPEHGAKVMSLQDPLKKM 196
>sp|Q97LD6|SYW_CLOAB Tryptophan--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=trpS PE=3 SV=2
Length = 335
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 12/207 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
KK I SG+QP+G + +GNY GAIKNW+ LQ+ Y+ + IVDLHAIT+ + + L + T +
Sbjct: 5 KKVIFSGIQPSGELTIGNYFGAIKNWVKLQDEYDCYYCIVDLHAITVKQEAKDLRRRTLQ 64
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
A Y+A GID K ++F+QSHV AHV+ W+L+ + +G L++M QFK+KS K +
Sbjct: 65 LIATYIASGIDPEKNTIFIQSHVPAHVQAQWILNCMSYVGELSRMTQFKDKSKKYEDTGI 124
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
G LL YPVLMA+DIL+YQ+D VPVG+DQ QH+ELTR+LA+R N Y
Sbjct: 125 GAGLLNYPVLMAADILIYQADLVPVGKDQTQHIELTRDLAQRFNSTY------------S 172
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
FK+PE IP GA++MSL + L K+
Sbjct: 173 ETFKIPEGYIPTGGAKIMSLQEPLKKM 199
>sp|P21656|SYW_BACSU Tryptophan--tRNA ligase OS=Bacillus subtilis (strain 168) GN=trpS
PE=1 SV=2
Length = 330
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/208 (52%), Positives = 137/208 (65%), Gaps = 14/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L K R
Sbjct: 1 MKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS G E
Sbjct: 61 NLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSK--GNEA 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLY +D VPVGEDQKQHLELTR LAER N Y
Sbjct: 119 VVSGLLTYPPLMAADILLYGTDLVPVGEDQKQHLELTRNLAERFNKKYND---------- 168
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
IF +PE IP GAR+MSL D L K+
Sbjct: 169 --IFTIPEVKIPKVGARIMSLNDPLKKM 194
>sp|Q8Y577|SYW_LISMO Tryptophan--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=trpS PE=3 SV=1
Length = 331
Score = 211 bits (536), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 136/208 (65%), Gaps = 14/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D K+++F+QS V AH + W+L IG L +M QFK+KS AG
Sbjct: 61 SLAALYLAVGLDPEKSTLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKS--AGKAG 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
IF +PE IP GARVMSL D K+
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKM 194
>sp|Q71XG7|SYW_LISMF Tryptophan--tRNA ligase OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=trpS PE=3 SV=1
Length = 331
Score = 210 bits (535), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/208 (51%), Positives = 135/208 (64%), Gaps = 14/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ+D VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
IF +PE IP GARVMSL D K+
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKM 194
>sp|Q9AC05|SYW_CAUCR Tryptophan--tRNA ligase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=trpS PE=3 SV=1
Length = 344
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/205 (50%), Positives = 139/205 (67%), Gaps = 11/205 (5%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETA 139
R++SGVQP+G++HLGNYLGA+ + LQ+ +T F+ DLHAIT+ D L++ TRE A
Sbjct: 14 RVLSGVQPSGALHLGNYLGALVKFTRLQHEIDTFIFVADLHAITVWQDPAALAQQTREIA 73
Query: 140 AIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGV 199
A Y+A G+D KA++F QS VR H EL W+ + +GWL++M QFKEKS K E V
Sbjct: 74 AAYIASGLDPDKATIFPQSAVREHAELSWIFNCVARLGWLDRMTQFKEKSGK-HKERSSV 132
Query: 200 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259
L TYPVL A+DIL+Y++ VPVGEDQKQHLELTR++A++ N+ +
Sbjct: 133 GLYTYPVLQAADILIYKATHVPVGEDQKQHLELTRDIAQKFNHDFNAP----------GF 182
Query: 260 FKVPEPLIPPAGARVMSLTDGLSKV 284
F +P+PLI GARVMSL DG +K+
Sbjct: 183 FPLPDPLIQGPGARVMSLRDGSAKM 207
>sp|Q81TS6|SYW_BACAN Tryptophan--tRNA ligase OS=Bacillus anthracis GN=trpS PE=3 SV=1
Length = 329
Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 139/204 (68%), Gaps = 14/204 (6%)
Query: 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140
I SG+QP+G+I LGNYLGA+K + LQN ++ F IV+ HAIT+P D QL K R AA
Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVPQDPVQLRKNIRSLAA 63
Query: 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVA 200
+Y+ACGID KA++FVQS V AH +L W++ S +G L +M Q+K+K+ +G ++V
Sbjct: 64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSVAYVGELERMTQYKDKA--SGRDSVPAG 121
Query: 201 LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260
LLTYP LMA+DILLY ++ VPVG+DQKQH+ELTR+LAER N R +F
Sbjct: 122 LLTYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFN------------KRFREVF 169
Query: 261 KVPEPLIPPAGARVMSLTDGLSKV 284
+PE IP GARVMSLT+ K+
Sbjct: 170 TIPEIRIPKVGARVMSLTEPTKKM 193
>sp|Q8FRR3|SYW_COREF Tryptophan--tRNA ligase OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=trpS PE=3 SV=1
Length = 346
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 135/206 (65%), Gaps = 13/206 (6%)
Query: 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
R++SG+QPT S HLGNYLGA+K WI LQNSY+ +FI DLHAIT+ + ++L T
Sbjct: 15 RVLSGIQPTADSYHLGNYLGAVKQWIDLQNSYDAFYFIPDLHAITVDQNPEELRARTVSG 74
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA LA GID ++++FVQSH+ AH EL W+L+ T G ++M QFK+KS K G E
Sbjct: 75 AAQLLALGIDPERSTLFVQSHIPAHAELSWVLTCLTGFGEASRMTQFKDKSTKQGAERTS 134
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N R G
Sbjct: 135 AGLFTYPMLMAADILLYRPQLVPVGEDQRQHLELTRTLAERFN------------NRFGT 182
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
+F+VPE IP +++ L + +K+
Sbjct: 183 VFEVPEGFIPEGASKIYDLQNPTAKM 208
>sp|Q929H5|SYW_LISIN Tryptophan--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=trpS PE=3 SV=1
Length = 331
Score = 208 bits (529), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/208 (50%), Positives = 135/208 (64%), Gaps = 14/208 (6%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+KK I SG+QP+G + LGNY+GA+K + Q+ YE + IVD HAIT+P D +L + TR
Sbjct: 1 MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEHAITVPQDRLKLREQTR 60
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGEN 196
AA+YLA G+D KA++F+QS V AH + W+L IG L +M QFK+KS G
Sbjct: 61 SLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGELERMTQFKDKSDGKAG-- 118
Query: 197 VGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256
V LLTYP LMA+DILLYQ++ VPVGEDQKQH+ELTR+LAER N +
Sbjct: 119 VSAGLLTYPPLMAADILLYQTNLVPVGEDQKQHIELTRDLAERFN------------KKH 166
Query: 257 GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
IF +PE IP GARVMSL D K+
Sbjct: 167 ADIFTMPEVFIPKQGARVMSLQDPTKKM 194
>sp|P00953|SYW_GEOSE Tryptophan--tRNA ligase OS=Geobacillus stearothermophilus GN=trpS
PE=1 SV=1
Length = 328
Score = 206 bits (525), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 134/206 (65%), Gaps = 14/206 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AAKYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
+F +PE IP GAR+MSL D K+
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKM 193
>sp|Q89W91|SYW_BRAJA Tryptophan--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA
110) GN=trpS PE=3 SV=1
Length = 350
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 137/210 (65%), Gaps = 6/210 (2%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDT----QQLSKA 134
+R+ SGVQPTG++HLGNYLGAI N++ +Q ++ ++ +VD+HAIT D +L++
Sbjct: 5 ERVFSGVQPTGNLHLGNYLGAIVNFVKMQETHNCIYCVVDMHAITQGVDVWGGPVELARN 64
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A ++A GID K VF QS V H EL W+ + +GWL +M QFKEK+ K
Sbjct: 65 TREVTAAFIASGIDPKKHIVFNQSQVSGHAELAWIFNCVARMGWLGRMTQFKEKAGK-DR 123
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
EN V L YPVLMA+DILLY++ VPVGEDQKQHLEL+R++A++ N +G + G
Sbjct: 124 ENASVGLFDYPVLMAADILLYRATHVPVGEDQKQHLELSRDIAQKFNNDFGD-SIRAQGT 182
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
G F +PEP I RVMSL DG K+
Sbjct: 183 NDGLFFPLPEPFITGPATRVMSLRDGTKKM 212
>sp|Q8ERU2|SYW_OCEIH Tryptophan--tRNA ligase OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=trpS PE=3
SV=1
Length = 327
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 134/206 (65%), Gaps = 14/206 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G++ LGNYLGAI+ ++ LQN Y F IVD HAIT+P D +L K +
Sbjct: 2 KTIFSGIQPSGTLTLGNYLGAIQQFVELQNDYNCYFCIVDEHAITVPQDRLELRKNIKSL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+Y+A GID +++F+QS V H +L W+L S + +G L +M Q+K+KS G E +
Sbjct: 62 AALYIASGIDPDSSTLFIQSEVPEHTQLGWMLQSISYVGELERMTQYKDKSQ--GQEAIS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
ALLTYP LMA+DILLY +D VPVG+DQKQHLEL R LA+R N R
Sbjct: 120 SALLTYPSLMAADILLYNTDVVPVGDDQKQHLELARNLAQRFN------------NRFND 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
IF VPE IP GAR+MSL + K+
Sbjct: 168 IFTVPEVRIPKVGARIMSLQEPTKKM 193
>sp|Q8NSJ4|SYW_CORGL Tryptophan--tRNA ligase OS=Corynebacterium glutamicum (strain ATCC
13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=trpS PE=3 SV=1
Length = 345
Score = 204 bits (520), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 136/212 (64%), Gaps = 13/212 (6%)
Query: 74 SSSVKKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
++ R++SG+QPT S HLGNYLGA+K WI LQ+SY+ +FI DLHAIT+ + ++L
Sbjct: 9 TAQTASRVLSGIQPTADSYHLGNYLGAVKQWIDLQDSYDAFYFIPDLHAITVDQEPEELR 68
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
T AA LA GID ++++FVQSHV AH EL W+L+ T G ++M QFK+KS K
Sbjct: 69 NRTISGAAQLLALGIDPERSTLFVQSHVPAHAELSWVLTCLTGFGEASRMTQFKDKSSKR 128
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
G + L TYP+LMA+DILLY+ VPVGEDQ+QHLELTR LAER N
Sbjct: 129 GADRTSAGLFTYPMLMAADILLYRPHLVPVGEDQRQHLELTRTLAERFN----------- 177
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKV 284
R G F+VPE IP +++ L + +K+
Sbjct: 178 -NRFGKAFEVPEGFIPQGASKIYDLQNPTAKM 208
>sp|Q830U2|SYW_ENTFA Tryptophan--tRNA ligase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=trpS PE=3 SV=1
Length = 336
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 131/206 (63%), Gaps = 8/206 (3%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G+ +GNY+GA+K +I LQN Y F IVD HAIT+P + Q+L + R
Sbjct: 2 KTIFSGIQPSGTPTIGNYIGAMKQFIELQNEYNCYFCIVDEHAITVPQEPQKLRQQIRSL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA G+D KA++F+QS V AH E W++ T IG L +M QFK+KS K G V
Sbjct: 62 AALYLAVGLDPQKATIFIQSEVSAHAEAGWIIQCNTSIGELERMTQFKDKSQKNGRAGVS 121
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LM DI+LY +D VPVG+DQKQHLELTR+ ER N Y + +
Sbjct: 122 AGLLTYPPLMVGDIVLYNADLVPVGDDQKQHLELTRDFVERFNKRYAQKNQE-------- 173
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
I +PE I G+R+MSL + K+
Sbjct: 174 ILTIPEVKIAEQGSRIMSLQEPTKKM 199
>sp|P67587|SYW_BRUSU Tryptophan--tRNA ligase OS=Brucella suis biovar 1 (strain 1330)
GN=trpS PE=3 SV=1
Length = 355
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 9/218 (4%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKA 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 250
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 251 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
K+G F + EP+I R+MSL DG K+
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKM 218
>sp|P67586|SYW_BRUME Tryptophan--tRNA ligase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=trpS PE=3 SV=1
Length = 355
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 9/218 (4%)
Query: 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKA 134
S+ K + SGVQPTG++HLGNYLGAIK W+ +Q + E ++ +VD+HA+T+ D +L ++
Sbjct: 2 STFKPLVFSGVQPTGNLHLGNYLGAIKRWVEVQKTEECIYCVVDMHALTVSPDPVELMQS 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
TRE A +LA GID K+ VF QS V H EL W+ + IGW+++M QFK+K+ K
Sbjct: 62 TREVTAAFLAAGIDPKKSIVFNQSRVMQHAELAWVFNCVARIGWMSRMTQFKDKAGK-DR 120
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK---- 250
EN + L YP LMA+DILLY++ VPVGEDQKQHLELTR++A++ N Y R
Sbjct: 121 ENASLGLFAYPSLMAADILLYRATAVPVGEDQKQHLELTRDIAQKFNNDYSDRIASLGVG 180
Query: 251 ---KLGGRG-GAIFKVPEPLIPPAGARVMSLTDGLSKV 284
K+G F + EP+I R+MSL DG K+
Sbjct: 181 VDMKVGDEQVSGFFPLTEPMISGPAMRIMSLRDGTKKM 218
>sp|Q7VRN5|SYW_BLOFL Tryptophan--tRNA ligase OS=Blochmannia floridanus GN=trpS PE=3 SV=1
Length = 334
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 139/207 (67%), Gaps = 13/207 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
K + SG QPTG + +GNY+G+I++W+ +Q Y+ ++ IVDLH+IT+ + L + +
Sbjct: 3 KSIVFSGAQPTGKLTIGNYIGSIRHWVEMQKHYQCIYCIVDLHSITVRNNLCSLHTRSLD 62
Query: 138 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENV 197
T A+YLACGI+ +++F+QSHV H +L W+L+ T G LN+M+QFKEKS + N+
Sbjct: 63 TLALYLACGINPDISTIFIQSHVPEHSQLNWILNCYTYYGELNRMVQFKEKSSRYKN-NI 121
Query: 198 GVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257
V L YP+LMASDILLYQ+DFVPVGEDQ+QH+EL R++A R N ++ G
Sbjct: 122 NVGLFNYPILMASDILLYQTDFVPVGEDQRQHVELVRDIARRFNNIF------------G 169
Query: 258 AIFKVPEPLIPPAGARVMSLTDGLSKV 284
+FK+P LI G+R+MSL + K+
Sbjct: 170 TVFKIPNVLISMYGSRIMSLLNPTRKM 196
>sp|Q6AGQ7|SYW_LEIXX Tryptophan--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=trpS PE=3 SV=1
Length = 337
Score = 201 bits (511), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 135/206 (65%), Gaps = 13/206 (6%)
Query: 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
R+ SG+QP+ S+HLGNY+GA+ W LQ +++ F +VDLHAIT+ D L + TR T
Sbjct: 6 RLYSGMQPSADSLHLGNYVGALLQWKELQAAHDAFFSVVDLHAITVAQDPHDLREKTRRT 65
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA Y+A GID S ++++VQSHV AH +L W+LS+ T G +M QFK+KS K G E
Sbjct: 66 AAQYIAAGIDPSVSTLYVQSHVPAHAQLAWVLSTITGYGEAARMTQFKDKSAKQGAEATS 125
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
V L TYPVLMA+DILL+ +D VPVG+DQ+QH+ELTR+LAER N R G
Sbjct: 126 VGLFTYPVLMAADILLFDADVVPVGDDQRQHVELTRDLAERFN------------SRFGE 173
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
F VP+ +I GAR+ L SK+
Sbjct: 174 TFVVPQAMILKDGARIYDLQSPESKM 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,341,406
Number of Sequences: 539616
Number of extensions: 4416825
Number of successful extensions: 11056
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 10611
Number of HSP's gapped (non-prelim): 215
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)