Query 023084
Match_columns 287
No_of_seqs 182 out of 1350
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023084.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023084hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 8.9E-67 1.9E-71 503.1 22.9 230 58-287 25-255 (389)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.6E-62 1E-66 458.3 18.5 197 76-287 3-202 (314)
3 KOG2713 Mitochondrial tryptoph 100.0 2E-61 4.3E-66 443.8 16.1 199 78-287 13-215 (347)
4 PRK12284 tryptophanyl-tRNA syn 100.0 6.9E-61 1.5E-65 465.9 20.1 197 78-287 2-206 (431)
5 PRK12556 tryptophanyl-tRNA syn 100.0 4.5E-60 9.7E-65 450.0 20.1 196 78-287 3-206 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 1.4E-59 3.1E-64 453.3 20.9 206 79-287 3-268 (398)
7 PRK00927 tryptophanyl-tRNA syn 100.0 1.1E-59 2.4E-64 447.4 19.0 196 79-287 2-197 (333)
8 TIGR00233 trpS tryptophanyl-tR 100.0 2.5E-58 5.4E-63 437.5 18.4 194 77-287 1-196 (328)
9 cd00806 TrpRS_core catalytic c 100.0 2.7E-57 5.9E-62 421.9 18.9 193 80-287 1-195 (280)
10 PRK12282 tryptophanyl-tRNA syn 100.0 6.4E-57 1.4E-61 428.6 19.9 197 78-287 2-200 (333)
11 PRK12285 tryptophanyl-tRNA syn 100.0 3.4E-53 7.3E-58 407.7 17.8 184 76-287 64-255 (368)
12 PTZ00126 tyrosyl-tRNA syntheta 100.0 4.3E-51 9.2E-56 394.8 17.5 189 76-287 64-261 (383)
13 PRK08560 tyrosyl-tRNA syntheta 100.0 3.9E-51 8.5E-56 388.2 16.8 186 76-287 28-218 (329)
14 cd00395 Tyr_Trp_RS_core cataly 100.0 2.2E-49 4.7E-54 367.8 18.8 181 80-287 1-202 (273)
15 PF00579 tRNA-synt_1b: tRNA sy 100.0 6.4E-49 1.4E-53 365.7 16.9 194 75-287 2-202 (292)
16 cd00805 TyrRS_core catalytic c 100.0 4E-48 8.6E-53 358.4 16.6 181 79-287 1-199 (269)
17 PTZ00348 tyrosyl-tRNA syntheta 100.0 5.5E-46 1.2E-50 379.3 17.6 190 76-287 30-226 (682)
18 PRK05912 tyrosyl-tRNA syntheta 100.0 9.1E-43 2E-47 339.5 18.1 185 76-287 31-236 (408)
19 PLN02486 aminoacyl-tRNA ligase 100.0 1.3E-42 2.9E-47 335.5 17.8 183 76-287 71-269 (383)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 1.2E-41 2.6E-46 331.7 16.7 188 75-287 30-234 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 2.2E-41 4.7E-46 326.9 16.1 181 78-287 30-225 (377)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 7.7E-37 1.7E-41 296.3 16.1 184 78-287 32-228 (401)
23 KOG2144 Tyrosyl-tRNA synthetas 100.0 1E-32 2.3E-37 254.7 8.9 184 77-287 33-226 (360)
24 KOG2145 Cytoplasmic tryptophan 100.0 1.4E-29 3.1E-34 234.3 9.0 184 75-287 82-282 (397)
25 PTZ00348 tyrosyl-tRNA syntheta 99.9 5.5E-26 1.2E-30 232.7 12.7 145 109-286 407-559 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 4.2E-20 9.1E-25 176.9 12.9 185 78-287 63-277 (467)
27 cd00808 GluRS_core catalytic c 99.7 2E-16 4.3E-21 144.9 11.6 150 86-287 9-166 (239)
28 cd00802 class_I_aaRS_core cata 99.6 1.4E-14 3.1E-19 121.4 10.8 62 204-287 78-142 (143)
29 cd00418 GlxRS_core catalytic c 99.3 8.8E-12 1.9E-16 113.8 10.9 148 86-287 9-157 (230)
30 PRK05710 glutamyl-Q tRNA(Asp) 99.1 1.2E-09 2.7E-14 103.3 11.4 172 86-287 13-240 (299)
31 PRK01406 gltX glutamyl-tRNA sy 99.0 4.8E-09 1E-13 104.9 12.7 172 86-287 12-255 (476)
32 PRK14895 gltX glutamyl-tRNA sy 98.9 5.6E-09 1.2E-13 105.0 11.2 177 80-287 4-244 (513)
33 TIGR00464 gltX_bact glutamyl-t 98.9 2.1E-08 4.5E-13 100.2 13.5 172 86-287 9-245 (470)
34 TIGR03838 queuosine_YadB gluta 98.8 3.9E-08 8.5E-13 92.0 11.2 172 86-287 8-233 (272)
35 COG0008 GlnS Glutamyl- and glu 98.8 3.1E-08 6.7E-13 99.0 9.8 177 81-287 10-254 (472)
36 PRK12410 glutamylglutaminyl-tR 98.7 1.1E-07 2.4E-12 94.1 11.1 170 86-287 7-239 (433)
37 PLN02627 glutamyl-tRNA synthet 98.7 1.1E-07 2.5E-12 96.0 11.1 178 80-287 47-297 (535)
38 PLN03233 putative glutamate-tR 98.7 7.9E-08 1.7E-12 97.0 9.5 175 81-287 12-250 (523)
39 PF00749 tRNA-synt_1c: tRNA sy 98.6 3.1E-07 6.8E-12 87.3 12.3 172 86-287 9-247 (314)
40 cd00674 LysRS_core_class_I cat 98.6 1.5E-07 3.3E-12 91.0 10.3 80 78-160 20-129 (353)
41 PTZ00402 glutamyl-tRNA synthet 98.6 1.5E-07 3.3E-12 96.1 10.7 176 81-287 53-292 (601)
42 PRK00750 lysK lysyl-tRNA synth 98.6 1.2E-07 2.7E-12 95.6 9.6 50 215-287 233-284 (510)
43 PRK12558 glutamyl-tRNA synthet 98.6 2.1E-07 4.6E-12 92.4 10.7 170 86-287 10-244 (445)
44 cd09287 GluRS_non_core catalyt 98.6 1.6E-07 3.5E-12 86.4 8.8 157 83-287 6-170 (240)
45 cd00807 GlnRS_core catalytic c 98.5 5E-07 1.1E-11 83.1 10.0 132 86-241 9-146 (238)
46 PRK04156 gltX glutamyl-tRNA sy 98.5 1.1E-06 2.3E-11 89.8 12.3 180 78-287 101-342 (567)
47 PLN02907 glutamate-tRNA ligase 98.4 1.9E-06 4.1E-11 90.3 10.6 154 80-241 213-430 (722)
48 PLN02859 glutamine-tRNA ligase 98.3 1.5E-06 3.2E-11 91.2 9.1 175 81-287 265-503 (788)
49 cd00671 ArgRS_core catalytic c 98.0 5.3E-05 1.1E-09 67.9 10.9 153 82-241 6-184 (212)
50 PRK05347 glutaminyl-tRNA synth 97.9 2.8E-05 6.1E-10 79.1 8.1 94 81-181 30-134 (554)
51 cd02156 nt_trans nucleotidyl t 97.9 4.3E-05 9.3E-10 60.9 7.5 56 81-140 2-57 (105)
52 TIGR00467 lysS_arch lysyl-tRNA 97.9 4.2E-05 9.1E-10 77.5 8.8 80 78-160 19-128 (515)
53 TIGR00440 glnS glutaminyl-tRNA 97.9 3.8E-05 8.1E-10 77.9 8.0 90 86-182 8-106 (522)
54 PTZ00437 glutaminyl-tRNA synth 97.8 3.4E-05 7.4E-10 78.7 7.1 92 81-181 52-155 (574)
55 PF01921 tRNA-synt_1f: tRNA sy 97.8 4.6E-05 1E-09 73.9 7.7 82 76-160 22-134 (360)
56 PRK14703 glutaminyl-tRNA synth 97.8 4.5E-05 9.8E-10 80.5 8.2 96 80-182 31-137 (771)
57 TIGR00463 gltX_arch glutamyl-t 97.8 6.1E-05 1.3E-09 77.0 7.9 93 80-180 93-196 (560)
58 PRK00260 cysS cysteinyl-tRNA s 97.8 0.00041 8.9E-09 69.4 13.0 75 76-150 21-110 (463)
59 COG1384 LysS Lysyl-tRNA synthe 97.4 0.0015 3.2E-08 65.9 11.8 81 77-160 19-131 (521)
60 cd00668 Ile_Leu_Val_MetRS_core 97.3 0.0041 8.8E-08 58.7 12.7 64 87-150 11-100 (312)
61 PRK01611 argS arginyl-tRNA syn 97.3 0.0015 3.3E-08 65.9 10.2 153 80-241 115-298 (507)
62 cd00672 CysRS_core catalytic c 97.1 0.015 3.3E-07 52.6 13.2 71 79-149 22-105 (213)
63 KOG1149 Glutamyl-tRNA syntheta 96.4 0.0053 1.2E-07 61.0 5.8 97 79-182 34-147 (524)
64 PRK00133 metG methionyl-tRNA s 95.3 0.057 1.2E-06 56.5 8.1 74 78-151 3-90 (673)
65 COG0143 MetG Methionyl-tRNA sy 95.2 0.063 1.4E-06 55.3 7.8 66 86-151 15-93 (558)
66 PLN02224 methionine-tRNA ligas 94.3 0.25 5.3E-06 51.6 9.6 74 78-151 70-157 (616)
67 KOG1147 Glutamyl-tRNA syntheta 94.2 0.18 4E-06 51.7 8.1 75 80-161 200-276 (712)
68 PF09334 tRNA-synt_1g: tRNA sy 94.0 0.16 3.6E-06 49.8 7.3 66 86-151 9-87 (391)
69 PRK14536 cysS cysteinyl-tRNA s 93.5 0.55 1.2E-05 47.8 10.0 78 72-150 17-119 (490)
70 PLN02610 probable methionyl-tR 92.9 0.54 1.2E-05 50.5 9.4 65 87-151 28-106 (801)
71 PRK12268 methionyl-tRNA synthe 92.8 0.32 6.9E-06 49.5 7.3 72 80-151 5-92 (556)
72 cd00812 LeuRS_core catalytic c 92.5 0.29 6.3E-06 46.4 6.2 80 87-167 11-103 (314)
73 PRK00390 leuS leucyl-tRNA synt 92.5 0.56 1.2E-05 50.3 9.0 72 78-150 33-119 (805)
74 TIGR00398 metG methionyl-tRNA 91.7 0.33 7.1E-06 49.1 5.8 65 87-151 10-87 (530)
75 cd00818 IleRS_core catalytic c 91.6 0.58 1.3E-05 44.9 7.1 36 87-122 12-52 (338)
76 PRK11893 methionyl-tRNA synthe 91.0 0.94 2E-05 45.3 8.2 71 87-159 12-95 (511)
77 cd00814 MetRS_core catalytic c 90.5 0.52 1.1E-05 44.7 5.6 65 87-151 11-88 (319)
78 PRK12267 methionyl-tRNA synthe 90.4 0.72 1.6E-05 48.1 7.0 65 87-151 15-92 (648)
79 cd00817 ValRS_core catalytic c 89.2 0.92 2E-05 44.3 6.3 64 87-150 12-104 (382)
80 PLN02946 cysteine-tRNA ligase 88.4 2.8 6.1E-05 43.4 9.4 77 72-149 74-165 (557)
81 TIGR00396 leuS_bact leucyl-tRN 88.2 1.3 2.8E-05 47.8 7.2 71 79-149 31-115 (842)
82 PLN02563 aminoacyl-tRNA ligase 87.8 3.8 8.3E-05 45.1 10.4 74 78-151 111-201 (963)
83 TIGR00435 cysS cysteinyl-tRNA 87.0 3.9 8.5E-05 41.2 9.4 72 80-151 24-108 (465)
84 COG0495 LeuS Leucyl-tRNA synth 85.4 1.6 3.5E-05 47.0 5.9 74 77-151 34-124 (814)
85 PRK14535 cysS cysteinyl-tRNA s 84.6 5.6 0.00012 42.2 9.3 81 70-151 240-335 (699)
86 PF01406 tRNA-synt_1e: tRNA sy 83.8 3.9 8.4E-05 39.2 7.1 75 75-150 5-94 (300)
87 KOG1148 Glutaminyl-tRNA synthe 83.4 2.2 4.7E-05 44.5 5.5 100 80-186 248-357 (764)
88 TIGR03447 mycothiol_MshC cyste 82.9 12 0.00027 37.3 10.5 73 76-148 34-120 (411)
89 PTZ00419 valyl-tRNA synthetase 82.6 1.7 3.6E-05 47.8 4.7 44 78-121 61-109 (995)
90 PLN02843 isoleucyl-tRNA synthe 81.4 2.4 5.3E-05 46.5 5.5 74 78-151 33-136 (974)
91 PRK13208 valS valyl-tRNA synth 81.2 2.8 6.1E-05 44.8 5.8 74 78-151 39-141 (800)
92 TIGR00422 valS valyl-tRNA synt 79.5 2.8 6E-05 45.3 5.1 44 78-121 34-82 (861)
93 COG0018 ArgS Arginyl-tRNA synt 79.5 1.9 4.1E-05 44.8 3.6 41 82-122 123-169 (577)
94 COG0525 ValS Valyl-tRNA synthe 78.3 1.4 2.9E-05 47.8 2.2 37 87-123 44-84 (877)
95 cd00817 ValRS_core catalytic c 78.3 2.5 5.4E-05 41.3 3.9 51 215-287 295-347 (382)
96 PF00750 tRNA-synt_1d: tRNA sy 77.6 2.7 5.8E-05 40.7 3.9 40 82-121 26-71 (354)
97 PRK12418 cysteinyl-tRNA synthe 77.1 22 0.00049 35.1 10.2 72 78-150 9-96 (384)
98 cd00812 LeuRS_core catalytic c 76.8 2.6 5.7E-05 39.9 3.5 15 216-230 224-238 (314)
99 cd00818 IleRS_core catalytic c 76.4 3.9 8.5E-05 39.3 4.6 14 215-228 251-264 (338)
100 PRK14534 cysS cysteinyl-tRNA s 76.2 8.6 0.00019 39.2 7.2 72 78-150 21-117 (481)
101 PRK05729 valS valyl-tRNA synth 76.1 3.5 7.5E-05 44.7 4.6 44 78-121 37-85 (874)
102 PF00133 tRNA-synt_1: tRNA syn 75.9 3.2 6.9E-05 43.0 4.1 53 215-287 513-565 (601)
103 PRK05743 ileS isoleucyl-tRNA s 75.8 2.9 6.2E-05 45.6 3.9 50 214-287 543-596 (912)
104 TIGR00456 argS arginyl-tRNA sy 74.9 3 6.4E-05 43.0 3.6 40 80-119 116-161 (566)
105 TIGR00395 leuS_arch leucyl-tRN 73.7 4 8.7E-05 44.6 4.4 40 78-117 26-70 (938)
106 PTZ00399 cysteinyl-tRNA-synthe 73.2 14 0.00031 38.9 8.2 80 70-150 52-148 (651)
107 PRK12451 arginyl-tRNA syntheta 72.7 3.2 7E-05 42.8 3.2 40 82-121 119-164 (562)
108 PLN02660 pantoate--beta-alanin 72.4 12 0.00026 35.7 6.7 27 215-241 145-171 (284)
109 PLN02286 arginine-tRNA ligase 71.4 2.9 6.3E-05 43.3 2.6 39 81-119 122-166 (576)
110 PRK11893 methionyl-tRNA synthe 71.2 2.6 5.6E-05 42.2 2.1 17 215-231 253-269 (511)
111 cd02168 NMNAT_Nudix Nicotinami 71.0 18 0.00038 31.9 7.1 72 91-169 11-85 (181)
112 PF02662 FlpD: Methyl-viologen 68.9 23 0.00049 29.3 6.9 66 88-159 37-103 (124)
113 TIGR00435 cysS cysteinyl-tRNA 68.6 5.1 0.00011 40.4 3.5 28 207-234 210-238 (465)
114 PRK14900 valS valyl-tRNA synth 68.5 5.2 0.00011 44.4 3.8 51 215-287 490-542 (1052)
115 PRK12300 leuS leucyl-tRNA synt 66.3 6.2 0.00013 43.0 3.8 19 215-233 529-548 (897)
116 PRK14900 valS valyl-tRNA synth 66.3 3.6 7.8E-05 45.6 2.1 44 78-121 49-97 (1052)
117 KOG0436 Methionyl-tRNA synthet 65.6 30 0.00065 35.2 8.0 72 86-159 49-133 (578)
118 TIGR00422 valS valyl-tRNA synt 65.5 6.3 0.00014 42.6 3.7 51 215-287 477-529 (861)
119 PLN02943 aminoacyl-tRNA ligase 65.4 7.7 0.00017 42.6 4.4 51 215-287 535-587 (958)
120 PRK05729 valS valyl-tRNA synth 65.1 6 0.00013 42.9 3.5 51 215-287 472-524 (874)
121 cd00814 MetRS_core catalytic c 64.5 6.6 0.00014 37.2 3.3 17 216-232 235-251 (319)
122 PLN02843 isoleucyl-tRNA synthe 64.5 8.7 0.00019 42.3 4.6 16 213-228 561-576 (974)
123 TIGR00395 leuS_arch leucyl-tRN 64.4 7 0.00015 42.8 3.8 19 215-233 572-591 (938)
124 PRK12418 cysteinyl-tRNA synthe 64.1 8.1 0.00018 38.2 3.9 69 199-287 197-265 (384)
125 PF00133 tRNA-synt_1: tRNA syn 64.0 8.2 0.00018 40.0 4.1 46 77-122 23-74 (601)
126 PLN02381 valyl-tRNA synthetase 63.9 4.5 9.8E-05 44.9 2.3 44 78-121 129-177 (1066)
127 PTZ00419 valyl-tRNA synthetase 63.5 8 0.00017 42.6 4.1 51 215-287 537-589 (995)
128 PRK13804 ileS isoleucyl-tRNA s 63.1 8.7 0.00019 42.3 4.2 16 213-228 580-595 (961)
129 PRK13208 valS valyl-tRNA synth 61.6 11 0.00023 40.5 4.6 51 215-287 485-537 (800)
130 TIGR00392 ileS isoleucyl-tRNA 59.0 9.4 0.0002 41.3 3.6 14 215-228 563-576 (861)
131 PLN02943 aminoacyl-tRNA ligase 58.5 11 0.00025 41.3 4.2 44 78-121 89-137 (958)
132 KOG0435 Leucyl-tRNA synthetase 58.1 6.6 0.00014 41.7 2.2 77 74-151 54-147 (876)
133 TIGR00018 panC pantoate--beta- 58.1 28 0.00061 33.1 6.2 27 215-241 142-168 (282)
134 PRK12267 methionyl-tRNA synthe 57.2 8.7 0.00019 40.1 2.9 16 216-231 254-269 (648)
135 PRK05743 ileS isoleucyl-tRNA s 56.6 6.7 0.00015 42.8 2.0 73 79-151 51-152 (912)
136 cd02166 NMNAT_Archaea Nicotina 56.6 56 0.0012 28.0 7.4 66 85-160 8-77 (163)
137 TIGR00392 ileS isoleucyl-tRNA 55.4 7.3 0.00016 42.1 2.1 46 77-122 36-87 (861)
138 COG1908 FrhD Coenzyme F420-red 55.3 47 0.001 28.1 6.3 90 60-159 11-104 (132)
139 PLN02959 aminoacyl-tRNA ligase 53.4 17 0.00037 40.6 4.5 55 88-148 57-115 (1084)
140 PRK06039 ileS isoleucyl-tRNA s 52.1 17 0.00036 40.1 4.2 15 215-229 544-558 (975)
141 TIGR03447 mycothiol_MshC cyste 52.1 14 0.00031 36.8 3.4 34 205-239 230-263 (411)
142 PLN02882 aminoacyl-tRNA ligase 51.5 19 0.00042 40.5 4.6 24 215-239 566-589 (1159)
143 PLN02959 aminoacyl-tRNA ligase 49.2 23 0.0005 39.6 4.7 17 215-231 670-686 (1084)
144 PLN02381 valyl-tRNA synthetase 48.1 20 0.00043 40.0 4.0 51 215-287 607-659 (1066)
145 COG0215 CysS Cysteinyl-tRNA sy 46.5 50 0.0011 33.6 6.2 33 205-239 210-243 (464)
146 PRK13804 ileS isoleucyl-tRNA s 45.9 13 0.00029 40.9 2.2 45 78-122 55-105 (961)
147 TIGR00396 leuS_bact leucyl-tRN 44.3 15 0.00033 39.8 2.3 26 215-240 519-545 (842)
148 COG0215 CysS Cysteinyl-tRNA sy 42.7 17 0.00037 36.9 2.3 74 74-148 18-106 (464)
149 PLN02286 arginine-tRNA ligase 42.6 29 0.00063 36.0 4.0 25 217-241 329-353 (576)
150 PTZ00427 isoleucine-tRNA ligas 41.9 17 0.00037 41.1 2.3 45 78-122 103-153 (1205)
151 PRK00390 leuS leucyl-tRNA synt 41.3 25 0.00054 38.0 3.4 26 215-240 522-548 (805)
152 PRK12268 methionyl-tRNA synthe 40.9 16 0.00035 37.2 1.8 14 218-231 289-302 (556)
153 PRK14536 cysS cysteinyl-tRNA s 40.9 25 0.00055 35.9 3.2 33 205-239 222-255 (490)
154 KOG0432 Valyl-tRNA synthetase 40.9 21 0.00046 39.0 2.7 37 88-124 87-127 (995)
155 cd00560 PanC Pantoate-beta-ala 40.5 34 0.00074 32.4 3.8 26 216-241 141-166 (277)
156 TIGR00456 argS arginyl-tRNA sy 40.5 24 0.00052 36.4 3.0 25 217-241 329-353 (566)
157 PRK06039 ileS isoleucyl-tRNA s 40.0 17 0.00038 39.9 2.0 46 77-122 41-92 (975)
158 PF01406 tRNA-synt_1e: tRNA sy 39.4 33 0.00073 32.9 3.6 37 205-241 195-232 (300)
159 PRK05379 bifunctional nicotina 39.4 1.4E+02 0.0031 28.7 8.0 67 79-156 8-78 (340)
160 TIGR00398 metG methionyl-tRNA 37.9 34 0.00074 34.6 3.6 14 219-232 285-298 (530)
161 PTZ00427 isoleucine-tRNA ligas 36.6 42 0.00091 38.1 4.3 68 198-287 653-724 (1205)
162 PLN02882 aminoacyl-tRNA ligase 36.1 24 0.00052 39.8 2.3 45 78-122 39-89 (1159)
163 PRK01153 nicotinamide-nucleoti 34.7 1.5E+02 0.0033 25.8 6.8 27 85-118 9-36 (174)
164 PLN02224 methionine-tRNA ligas 34.4 44 0.00096 35.1 3.9 18 215-232 320-337 (616)
165 PRK00380 panC pantoate--beta-a 34.3 39 0.00084 32.0 3.1 27 215-241 139-165 (281)
166 PTZ00399 cysteinyl-tRNA-synthe 33.3 23 0.0005 37.4 1.6 27 205-231 257-284 (651)
167 COG4320 Uncharacterized protei 32.8 30 0.00065 33.9 2.1 32 88-125 62-94 (410)
168 PLN02946 cysteine-tRNA ligase 31.2 30 0.00065 36.0 1.9 35 199-233 260-295 (557)
169 PLN02563 aminoacyl-tRNA ligase 30.1 44 0.00095 37.0 3.1 27 215-241 615-642 (963)
170 PRK12451 arginyl-tRNA syntheta 29.5 52 0.0011 34.0 3.3 26 216-241 325-350 (562)
171 COG0018 ArgS Arginyl-tRNA synt 29.5 52 0.0011 34.4 3.4 25 217-241 336-360 (577)
172 PRK00133 metG methionyl-tRNA s 26.0 64 0.0014 34.0 3.3 13 219-231 287-299 (673)
173 PRK06973 nicotinic acid mononu 25.5 2.2E+02 0.0047 26.3 6.4 26 89-116 32-57 (243)
174 COG0495 LeuS Leucyl-tRNA synth 25.4 67 0.0015 35.0 3.4 18 215-232 525-542 (814)
175 PLN02413 choline-phosphate cyt 24.1 2.2E+02 0.0047 27.4 6.2 35 68-104 17-51 (294)
176 COG0060 IleS Isoleucyl-tRNA sy 23.9 91 0.002 34.6 4.0 14 217-230 556-569 (933)
177 PRK14534 cysS cysteinyl-tRNA s 22.8 62 0.0013 33.1 2.4 29 208-236 225-254 (481)
178 PF01467 CTP_transf_2: Cytidyl 20.5 4.3E+02 0.0094 20.8 6.8 31 90-122 8-39 (157)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.9e-67 Score=503.12 Aligned_cols=230 Identities=77% Similarity=1.208 Sum_probs=209.5
Q ss_pred eeeeccC-CCCCCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHH
Q 023084 58 CYCNVSL-SEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (287)
Q Consensus 58 ~~~~~~~-~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~ 136 (287)
||..+++ ..+.++.+++.-.++++|+||+|||.+|||||+|+|++|++||++++++|+||||||+|++.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 4444444 444444444444567899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcC
Q 023084 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (287)
Q Consensus 137 ~~i~~~lA~GiDp~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~ 216 (287)
+++++|+|+||||+|+.||+||++++|.+++|+|+|.+++++|+||++||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|+||||+||+||+|||||||+|||+.||.+.+++.|++++.+|++|++++++.+++||||+||++|||||
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS 255 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKS 255 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCC
Confidence 99999999999999999999999999998777778888888899999999988778999999998999998
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-62 Score=458.29 Aligned_cols=197 Identities=56% Similarity=0.918 Sum_probs=187.0
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhcc-CcEEEEEecceeecCCCCH--HHHHHHHHHHHHHHHHcCCCCCce
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKA 152 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g-~~~~ilIaD~hA~t~~~d~--~~i~~~~~~~i~~~lA~GiDp~kt 152 (287)
..+++||||++|||.||||||+|++++|+.+|++ ++++|+|||+||+|.+.++ +.+++++++++++|+|+||||+|+
T Consensus 3 ~~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~ 82 (314)
T COG0180 3 MKKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKS 82 (314)
T ss_pred CCCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCcccc
Confidence 4578999999999999999999999999999997 5999999999999998766 889999999999999999999999
Q ss_pred EEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHH
Q 023084 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (287)
Q Consensus 153 ~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~L 232 (287)
.||+||++++|.+|.|+|+|.+++++|+||.+||++..+.+ +.+++|+|.||+|||||||+|++++||||.||+||+||
T Consensus 83 ~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleL 161 (314)
T COG0180 83 TIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLEL 161 (314)
T ss_pred EEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHH
Confidence 99999999999999999999999999999999999987765 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 233 aRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+||||+|||+.|| .+|++|+++++.. ++||||+++ +|||||
T Consensus 162 tRDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS 202 (314)
T COG0180 162 TRDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKS 202 (314)
T ss_pred HHHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-Cccccc
Confidence 9999999999998 3699999999986 789999665 899998
No 3
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-61 Score=443.76 Aligned_cols=199 Identities=58% Similarity=0.863 Sum_probs=190.2
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccC----cEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~----~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
+.++|+||||||.+|||||+|++++|++||+.+ .++|+|+|+||+|.|.||.++|+++.++++.++||||||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 779999999999999999999999999999944 3799999999999999999999999999999999999999999
Q ss_pred EEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHH
Q 023084 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (287)
Q Consensus 154 i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~La 233 (287)
+|+||++++|.|+.|+|+|.+++++|+||+|||++..+.+...+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999987666789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 234 Rdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|++|++||+.||.+ +|++|+.++....+||++|.||.+|||||
T Consensus 173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKS 215 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKS 215 (347)
T ss_pred HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccC
Confidence 99999999999964 59999999987668999999999999998
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.9e-61 Score=465.95 Aligned_cols=197 Identities=40% Similarity=0.687 Sum_probs=182.8
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~ 155 (287)
..+|||||+|||.+|||||+|++++|+++|+ +++++|+||||||+|++.|++++++++++++++|+||||||+|+.||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3589999999999999999999999999976 89999999999999988899999999999999999999999999999
Q ss_pred EccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhh---C---CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHH
Q 023084 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (287)
Q Consensus 156 ~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~---~---~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~h 229 (287)
+||++++|.||+|+|+|.+++++|+||.+||++..+. + .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875432 1 145899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|||||||+|||+.||.+ +|++|++++...+++|||| || +|||||
T Consensus 162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS 206 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKS 206 (431)
T ss_pred HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCC
Confidence 999999999999999743 4999999998767899999 67 599998
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-60 Score=450.04 Aligned_cols=196 Identities=41% Similarity=0.687 Sum_probs=180.2
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~ 155 (287)
+.++|+||||||.+|||||+|++++|+++|+ +++++|+||||||++.+++++++++++++++++|+|+||||+|+.||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 3589999999999999999999999999987 45599999999999877899999999999999999999999999999
Q ss_pred EccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC------CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHH
Q 023084 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (287)
Q Consensus 156 ~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~------~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~h 229 (287)
+||++++|.+|+|+++|.+++++|+||.+||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865421 246799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|||||+|+|||+.||. +|++|++++++..++|||| || +|||||
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS 206 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKS 206 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCC
Confidence 99999999999999983 5899999976545679999 78 599998
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-59 Score=453.26 Aligned_cols=206 Identities=40% Similarity=0.738 Sum_probs=187.3
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
-+||+||||||.+|||||+|++++|+++|++++++|+||||||+|++ .+++++++++.+++++|+|+||||+|+.||+|
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~Q 82 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFIQ 82 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 47999999999999999999999999999999999999999999985 49999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdl 236 (287)
|++++|++|+|+|+|.+++++|+|+++||++..+.+ .+++++|+++||+|||||||+|++|+||||+||+||+||||||
T Consensus 83 S~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRdI 162 (398)
T PRK12283 83 SKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREI 162 (398)
T ss_pred CCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHHH
Confidence 999999999999999999999999999999876531 3578999999999999999999999999999999999999999
Q ss_pred HHHHhhhhCCcccc----------------------------------------------------------ccCCCCCc
Q 023084 237 AERVNYLYGGRKWK----------------------------------------------------------KLGGRGGA 258 (287)
Q Consensus 237 a~r~n~~~g~~~~~----------------------------------------------------------~~g~~~~~ 258 (287)
|+|||+.||.+.+- -..++++.
T Consensus 163 A~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (398)
T PRK12283 163 ARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGKI 242 (398)
T ss_pred HHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCCc
Confidence 99999999852110 01245666
Q ss_pred ccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 259 IFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 259 ~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|+.|++++++ +++|||| || +|||||
T Consensus 243 ~~~~P~~~~~~-~~~I~gL-dg-~KMSKS 268 (398)
T PRK12283 243 ILPEPQALLTE-ASKMPGL-DG-QKMSKS 268 (398)
T ss_pred ccCCCcccccC-CCcccCC-CC-CcCCCC
Confidence 89999999965 4899999 88 799998
No 7
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-59 Score=447.41 Aligned_cols=196 Identities=62% Similarity=1.036 Sum_probs=184.7
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS 158 (287)
+++|+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (287)
Q Consensus 159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~ 238 (287)
+|++|.+++|+++|.+++++|+|+.+|+++.++.+ +++++|+|+||+|||||||++++|+||||+||+||+|||||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998865433 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+||+.||. +|++|+++++..+++||||+++++|||||
T Consensus 161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS 197 (333)
T PRK00927 161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKS 197 (333)
T ss_pred Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCC
Confidence 99999973 58999999987667899996565799998
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=2.5e-58 Score=437.48 Aligned_cols=194 Identities=50% Similarity=0.739 Sum_probs=182.4
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (287)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~--d~~~i~~~~~~~i~~~lA~GiDp~kt~i 154 (287)
+++++|+|++|||.+|||||+++++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+|+||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 46799999999999999999999999988888999999999999999865 8899999999999999999999999999
Q ss_pred EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (287)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR 234 (287)
|+||++++|+++.|.++|.+|+++|+|+.+||++.. .+++++|+|+||+|||||||++++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 26789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|+|+|||+.||. +|++|+++++++.++|||| +| +|||||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS 196 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKS 196 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCC
Confidence 999999999973 5999999999887899999 66 799998
No 9
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=2.7e-57 Score=421.88 Aligned_cols=193 Identities=52% Similarity=0.874 Sum_probs=182.6
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~-d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
++|+|++|||.+|||||++++.+|++||+ |++++|+|||+||+|++. +++++++++++++++|+|+|+||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999998899999999 999999999999999976 9999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla 237 (287)
|++++|.++.|+|+|.+++++|+|+.+|+++.+. .+++++|+|+||+||||||+++++|+||||.||++|+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998664 36789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|||+.||. +|++|++++++ +++||||++|++|||||
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS 195 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKS 195 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCC
Confidence 999998873 59999999985 46799997777899998
No 10
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=6.4e-57 Score=428.61 Aligned_cols=197 Identities=37% Similarity=0.612 Sum_probs=182.4
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
+.++|+|++|||.+|||||++++++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 45899999999999999999999999999996679999999999997 68999999999999999999999999999999
Q ss_pred ccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHH
Q 023084 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (287)
Q Consensus 157 qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRd 235 (287)
||+|++|.++.|.++|.+++++++|+.+||++..+.+ ++++++|+++||+||||||+++++|+||||+||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 236 la~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|++||+.||.+ +|..|++++.. +++|||| +|.+|||||
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS 200 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKS 200 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCC
Confidence 999999988753 48899988765 4679999 787899998
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.4e-53 Score=407.68 Aligned_cols=184 Identities=25% Similarity=0.350 Sum_probs=173.6
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
++++++|+|++|||.||||||++ +.+|++||+ |++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|+.
T Consensus 64 ~~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~ 142 (368)
T PRK12285 64 GKPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTE 142 (368)
T ss_pred CCCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 46889999999999999999987 579999999 8999999999999998 57999999999999999999999999999
Q ss_pred EEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhh------cCCCEEEeeccch
Q 023084 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQK 227 (287)
Q Consensus 154 i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~------~~adlvpvG~DQ~ 227 (287)
||+||+++++.++.|.++|.+|+++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+
T Consensus 143 i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~ 214 (368)
T PRK12285 143 IYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQD 214 (368)
T ss_pred EEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchH
Confidence 999999999999999999999999999998874 46799999999999999999 7889999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
||+|||||+|+|||+.|| |++|+++++++ |||| +| +|||||
T Consensus 215 ~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~~---lpgL-~G-~KMSkS 255 (368)
T PRK12285 215 PHIRLTRDIAERLHGGYG--------------FIKPSSTYHKF---MPGL-TG-GKMSSS 255 (368)
T ss_pred HHHHHHHHHHHHHhhhcC--------------CCCchhHhhhc---ccCC-CC-CcCCCC
Confidence 999999999999999998 88999999876 9999 56 599998
No 12
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-51 Score=394.80 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=166.5
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|||++||||++..+.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|
T Consensus 64 ~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k 143 (383)
T PTZ00126 64 KERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDN 143 (383)
T ss_pred CCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 578899999999999999994332348999999 99999999999999984 59999999999999999999999999
Q ss_pred eEEEEccc-hhhhhHHHHHHhcc----CCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084 152 ASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (287)
Q Consensus 152 t~i~~qS~-~~~~~el~w~L~~~----~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ 226 (287)
++||+||+ +++|.+++|.+.+. +++++++|+.+++.+.. .+++++|+|+||+||||||+++++|+||||.||
T Consensus 144 ~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ 220 (383)
T PTZ00126 144 VRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQ 220 (383)
T ss_pred eEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccH
Confidence 99999998 57899999997664 69999999988755422 256799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|++||||+|++||+ .++|.++++++ ||||+||++|||||
T Consensus 221 ~~~~~LaRdia~~~~~-----------------~~~~~~~~~~~---lpgL~dg~~KMSKS 261 (383)
T PTZ00126 221 RKVNMLAREYCDKKKI-----------------KKKPIILSHHM---LPGLLEGQEKMSKS 261 (383)
T ss_pred HHHHHHHHHHHHHhCC-----------------CCCceeecccc---cccCCCCCCCCCcC
Confidence 9999999999999984 23566665554 99999898999998
No 13
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.9e-51 Score=388.23 Aligned_cols=186 Identities=24% Similarity=0.392 Sum_probs=167.1
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
++++++|+|++|||.+||||+++ +.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|++
T Consensus 28 ~~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~ 106 (329)
T PRK08560 28 KEEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTE 106 (329)
T ss_pred CCCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 46889999999999999999875 679999999 99999999999999995 7999999999999999999999999999
Q ss_pred EEEccchhhhhH---HHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084 154 VFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (287)
Q Consensus 154 i~~qS~~~~~~e---l~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi 230 (287)
||+||+|+++.+ +.|.++|.+++++++|+.+++.+ . . ++.++|+|+||+||||||++|++|+||||.||++|+
T Consensus 107 i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 107 FVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred EEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 999999987654 44559999999999998876542 2 1 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|+||+|++|| +.+|.++++++ ||||+++++|||||
T Consensus 183 ~l~Rdia~~~n------------------~~~p~~l~~~~---l~~L~g~~~KMSKS 218 (329)
T PRK08560 183 MLAREVLPKLG------------------YKKPVCIHTPL---LTGLDGGGIKMSKS 218 (329)
T ss_pred HHHHHhhHhcC------------------CCCceEEEcCc---cCCCCCCCCCCcCC
Confidence 99999999998 45799988876 99996666699998
No 14
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.2e-49 Score=367.79 Aligned_cols=181 Identities=32% Similarity=0.514 Sum_probs=168.4
Q ss_pred eEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 023084 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (287)
Q Consensus 80 ~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~----------d~~~i~~~~~~~i~~~lA~Gi 147 (287)
.+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||++++. +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 689999999 999999999999999843 789999999999999999999
Q ss_pred C--CCceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCC----C
Q 023084 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (287)
Q Consensus 148 D--p~kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~a----d 218 (287)
| |+|++||.||+|+ ++.++.|.+++.+++++|.|+.+||++. + +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999998 8999999999999999999999999875 2 56899999999999999999987 9
Q ss_pred EEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 219 lvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+||||.||++|++++||+|+|+|. |+.|..+++|+ |||| +|. |||||
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p~---l~~l-~G~-KMSKS 202 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIPL---VTKL-DGP-KFGKS 202 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeecc---ccCC-CCC-cCCCC
Confidence 999999999999999999999972 67899998876 9999 775 99998
No 15
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=6.4e-49 Score=365.67 Aligned_cols=194 Identities=36% Similarity=0.600 Sum_probs=176.6
Q ss_pred CCCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC---CHHHHHHHHHHHHHH--HHHcCCC
Q 023084 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGID 148 (287)
Q Consensus 75 ~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~---d~~~i~~~~~~~i~~--~lA~GiD 148 (287)
-++++++|+||+|||.|||||+++ +.+|++||+ |++++|+|||+||++++. +++.++++++++++. ++|+|+|
T Consensus 2 ~~~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d 80 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLD 80 (292)
T ss_dssp THSSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSH
T ss_pred CCCCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccC
Confidence 357899999999999999997766 579999997 999999999999999954 589999999999999 9999999
Q ss_pred CCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCC-CCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084 149 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG-ENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (287)
Q Consensus 149 p~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~-~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~ 227 (287)
|+++.||+||+|.++.++.|.+.+..+..+++|+++++++..+.+. +++++|+|+||+||||||+++++|+||||.||+
T Consensus 81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~ 160 (292)
T PF00579_consen 81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR 160 (292)
T ss_dssp TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence 9999999999999999999999999999999999999997777653 589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|++++||+|+|+|+.. +|++|..+++++ +|+| +|.+|||||
T Consensus 161 ~~~~l~rd~a~k~~~~~--------------~~~~p~~l~~~~---l~~l-~G~~KMSKS 202 (292)
T PF00579_consen 161 GHIELARDLARKFNYKE--------------IFPKPAGLTSPL---LPGL-DGQKKMSKS 202 (292)
T ss_dssp HHHHHHHHHHHHHTHHS--------------TSSS-EEEEETC---BBST-TSSSBTTTT
T ss_pred HHHHHHHHHHhhhcccc--------------cccCchheeecc---cccc-CCccccCcc
Confidence 99999999999999751 388999999997 9999 787899998
No 16
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=4e-48 Score=358.35 Aligned_cols=181 Identities=23% Similarity=0.288 Sum_probs=164.9
Q ss_pred ceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 023084 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (287)
Q Consensus 79 ~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~lA~G 146 (287)
.++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ | .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999999 7999999986 59999999 9999999999999998 5 589999999999999999999
Q ss_pred CC--CCceEEEEccchhhhhHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEE
Q 023084 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (287)
Q Consensus 147 iD--p~kt~i~~qS~~~~~~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlv 220 (287)
+| |+|++||+||+|+++ ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 96 999999999999887 6676 9999999999999999887542 367899999999999999999999999
Q ss_pred EeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 221 pvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|||.||++|++++||+|+||| +..|..+.+++ |||| +|. |||||
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~------------------~~~~~~l~~~l---l~~l-~G~-KMSKS 199 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLG------------------YKKVVGLTTPL---LTGL-DGG-KMSKS 199 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhC------------------CCCcEEEeecc---ccCC-CCC-cccCC
Confidence 999999999999999999997 34577777777 9999 784 99998
No 17
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-46 Score=379.28 Aligned_cols=190 Identities=22% Similarity=0.336 Sum_probs=163.2
Q ss_pred CCCceEEEeecCCCcchhhhH-HHHHHHHHHHhccCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNY-LGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~-vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|||++||||+ +++++.|..+|+|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|
T Consensus 30 ~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK 109 (682)
T PTZ00348 30 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 109 (682)
T ss_pred CCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 457899999999999999994 56766777678899999999999999984 47889999899999999999999999
Q ss_pred eEEEEccc-hhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC--CCCccchhhhchHHHhhhhhhcCCCEEEeeccchH
Q 023084 152 ASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (287)
Q Consensus 152 t~i~~qS~-~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~--~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~ 228 (287)
++||+||+ +++|.+++|.+ .++++++.++.++|+.....+ .+++++|+++||+|||||||++++|+||||.||+|
T Consensus 110 ~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~q 187 (682)
T PTZ00348 110 VLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRK 187 (682)
T ss_pred eEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHH
Confidence 99999997 78899999998 466888888888877543222 23589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 229 hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|++||||+|+++|+. .+|..++++ +||||++|++|||||
T Consensus 188 h~eLaRdia~~~g~~-----------------~kpvil~~~---~LpGL~gg~~KMSKS 226 (682)
T PTZ00348 188 VNMLAREYCDLIGRK-----------------LKPVILSHH---MLAGLKQGQAKMSKS 226 (682)
T ss_pred HHHHHHHHHHHhCCC-----------------CCceecccc---cCcCCCCCCCcCCCC
Confidence 999999999999742 246655555 499998787899998
No 18
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=9.1e-43 Score=339.51 Aligned_cols=185 Identities=21% Similarity=0.268 Sum_probs=158.1
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL 143 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l 143 (287)
++++++|+||+|||. ||||||++ +.+|++||+ |++++++|||+||+++ |. +.+++++++.++ ...+
T Consensus 31 ~~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i-~~ql 108 (408)
T PRK05912 31 KEPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETI-KEQL 108 (408)
T ss_pred CCCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHH-HHHH
Confidence 367899999999995 99999997 579999999 8999999999999997 42 456788888765 4455
Q ss_pred HcCCCCCc--eEEEEccchhhhhHHHHHHh---ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---
Q 023084 144 ACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (287)
Q Consensus 144 A~GiDp~k--t~i~~qS~~~~~~el~w~L~---~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~--- 215 (287)
++|+||++ ++||+||+|.++.++.|.+. +.+++++|.++.+|+.+... ++++++|+|+||+|||||++++
T Consensus 109 ~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~ 186 (408)
T PRK05912 109 FKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKR 186 (408)
T ss_pred HHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhcc
Confidence 89999999 99999999999888888766 78898888888777765422 2578999999999999999999
Q ss_pred -CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 216 -~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|+||||.||++|++++||+|+|+|. +.+..+..|+ |+|+ || +|||||
T Consensus 187 ~~~~i~~gG~DQ~~ni~~grdla~r~~~------------------~~~~~l~~pl---L~~~-~G-~KMsKS 236 (408)
T PRK05912 187 YGCDLQLGGSDQWGNILSGRDLQRRYGG------------------KPQFGLTMPL---LTGL-DG-KKMGKS 236 (408)
T ss_pred CCCCEEeccHHHHHHHHHHHHHHHHhCC------------------CCeEEEecCC---cCCC-CC-CcccCC
Confidence 999999999999999999999999973 1244455566 9998 78 799998
No 19
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-42 Score=335.49 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=155.3
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+|++|||. |||||+++++ +.++||+ ++.++|+|+|+|+++. +.+.+++++++++++++|+|+|+||+|
T Consensus 71 ~~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~k 149 (383)
T PLN02486 71 GEKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVER 149 (383)
T ss_pred CCCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 568999999999995 9999999976 5557998 6788999999999998 469999999999999999999999999
Q ss_pred eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhh------hcCC-----CE
Q 023084 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DF 219 (287)
Q Consensus 152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl------~~~a-----dl 219 (287)
+.||.|++| +.+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||| .+.. |+
T Consensus 150 t~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~l 222 (383)
T PLN02486 150 TFIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCL 222 (383)
T ss_pred eEEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcce
Confidence 999977766 3345554332 4667888888877765 35679999999999999998 3444 99
Q ss_pred EEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 220 vpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
||||+||+||++||||+|+||| +.+|..+++++ +|||+++.+|||||
T Consensus 223 VPvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~~~---lp~L~g~~~KMSkS 269 (383)
T PLN02486 223 IPCAIDQDPYFRMTRDVAPRLG------------------YYKPALIESRF---FPALQGESGKMSAS 269 (383)
T ss_pred eecccchHHHHHHHHHHHHHhC------------------CCCcceecccc---ccCCCCCCCcCcCc
Confidence 9999999999999999999998 45788887766 99997766899998
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-41 Score=331.74 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=156.7
Q ss_pred CCCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHH
Q 023084 75 SSVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIY 142 (287)
Q Consensus 75 ~~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~ 142 (287)
.++++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ | .+.+++++|+.++.+++
T Consensus 30 ~~~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~ 108 (410)
T PRK13354 30 EGKPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQI 108 (410)
T ss_pred cCCCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHH
Confidence 3568999999999995 99999888 468999999 8999999999999997 4 25578999999888887
Q ss_pred HHcCCCCCceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhc----CC
Q 023084 143 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QS 217 (287)
Q Consensus 143 lA~GiDp~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~----~a 217 (287)
.+ |+||++++||+||+|.++.++.|.+.+..+.-.++||+++++++.+++ ++++++++|+||+|||||++++ ++
T Consensus 109 ~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~ 187 (410)
T PRK13354 109 FK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDV 187 (410)
T ss_pred HH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCC
Confidence 76 899999999999999876666666543333333446666666665553 3578999999999999999999 99
Q ss_pred CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|++|||.||++|++++||+|+|+|. ..|..+..|+ |+|+ ||+ |||||
T Consensus 188 ~iq~gG~DQ~~ni~~grdl~~r~~~------------------~~~~~lt~Pl---L~g~-dG~-KMsKS 234 (410)
T PRK13354 188 DLQIGGTDQWGNILMGRDLQRKLEG------------------EEQFGLTMPL---LEGA-DGT-KMGKS 234 (410)
T ss_pred CEEEecHHHHHHHHHHHHHHHHhCC------------------CCceEeccCC---ccCC-CCC-ccCCC
Confidence 9999999999999999999999983 3456666676 9998 897 99998
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=2.2e-41 Score=326.91 Aligned_cols=181 Identities=23% Similarity=0.315 Sum_probs=154.4
Q ss_pred CceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 023084 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (287)
Q Consensus 78 ~~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~lA~ 145 (287)
++++|+||+||| .+||||+++ +.+|++||+ ||+++|+|||+||+++ |. +.+++++|+ +.++.++++
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 799999998 468999999 9999999999999998 53 345555666 678889999
Q ss_pred CCCCCceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084 146 GIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (287)
Q Consensus 146 GiDp~kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv 222 (287)
|+||++++|++||+|. .+.++.|.+++.+++++|.+..+|+.+. . +++++++|+||+|||||++++++|+|||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~---~-~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL---E-RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH---h-cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 9999999999999985 4778888899999999999998876543 2 4589999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 223 G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|.||++|++.+||+|++++... .|.+|.+|+++. || .|||||
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~~~--------dg-~KmgKS 225 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLTPA--------DG-EKMGKS 225 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeecCC--------CC-CCccCC
Confidence 9999999999999999998533 266777776653 45 466665
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-37 Score=296.31 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=154.1
Q ss_pred CceEEEeecCCC-cchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C-CCHHHHHHHHH----HHHHHH-HHcCCC
Q 023084 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAIY-LACGID 148 (287)
Q Consensus 78 ~~~iytGi~PTG-~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~----~~i~~~-lA~GiD 148 (287)
++++|+||+||| .+||||+++. .++.+||+ ||+++++|||+||+++ | ++.++++..++ ++++.+ .++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 889999999999 6999999985 69999999 9999999999999999 5 45566655553 344433 356766
Q ss_pred CC-ceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeec
Q 023084 149 NS-KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (287)
Q Consensus 149 p~-kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~ 224 (287)
.+ +++|+++|+|. .+.+....++..+|++++.+..+++.+... +.++++++|+||+||++|+++++.|++.||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~--~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLER--EQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhcc--CCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 66 99999999995 355555567889999988888776544332 2579999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 225 DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|||.++.++||+++|++ .++|..|++|+ |.++ ||+ |||||
T Consensus 189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~PL---L~~l-dG~-KmgKs 228 (401)
T COG0162 189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTPL---LTGL-DGK-KMGKS 228 (401)
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCeEEEEecc---ccCC-CCC-ccccc
Confidence 99999999999999986 35788899998 9999 897 99998
No 23
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1e-32 Score=254.69 Aligned_cols=184 Identities=22% Similarity=0.200 Sum_probs=145.6
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC--CCHHHHHHHHH-HHHHHHHHcC---CCC
Q 023084 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP--YDTQQLSKATR-ETAAIYLACG---IDN 149 (287)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~--~d~~~i~~~~~-~~i~~~lA~G---iDp 149 (287)
+.+.||+|++|||++|+|.++++ .+..+|-+ ||+|.||+|||||++++ ...+.+..++. |....+.++| ++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm-~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPM-MKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeeh-hHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 57899999999999999998885 58888877 99999999999999995 23344444443 4444444554 445
Q ss_pred CceEEEEccch---hhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084 150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (287)
Q Consensus 150 ~kt~i~~qS~~---~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ 226 (287)
++..|...|++ .+++-..++++..++-..+++.-. ++.+. .+...++.++||+|||+|++++++|++++|+||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga--evvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA--EVVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh--hHHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 66666666765 246666777888887766665543 33333 267899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|..+.+||++++.++ +++|.+|++|+ ||||+.| +|||||
T Consensus 188 RKIf~~A~eylp~l~------------------ykKrihLmnpM---vPGL~q~-~KMSsS 226 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLG------------------YKKRIHLMNPM---VPGLAQG-EKMSSS 226 (360)
T ss_pred HHHHHHHHHhhhhhC------------------cccceeecCCC---Ccccccc-CccccC
Confidence 999999999999998 46899999987 9999755 799998
No 24
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-29 Score=234.27 Aligned_cols=184 Identities=19% Similarity=0.309 Sum_probs=155.9
Q ss_pred CCCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhccCc--EEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 023084 75 SSVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDN 149 (287)
Q Consensus 75 ~~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~g~~--~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp 149 (287)
.++|++.|||..|| +.|||||++++| .+| ||+.++ .+|.+.|.++++.+ ...++..+.+++|+++++|+|+||
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp 159 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDP 159 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCC
Confidence 35789999999999 569999999988 677 899555 69999999999984 578999999999999999999999
Q ss_pred CceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhc-----------CC
Q 023084 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QS 217 (287)
Q Consensus 150 ~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~-----------~a 217 (287)
.|+.||.+.++..-.-. + -++-++.+++++++.+..+| +++.++|.+.+|..|+|..+.. -.
T Consensus 160 ~kTfIFsn~~y~g~~~f---y---~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~ 233 (397)
T KOG2145|consen 160 KKTFIFSNLDYMGGPAF---Y---ENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIP 233 (397)
T ss_pred cceEEEechhhccCcHH---H---HHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCc
Confidence 99999999887321000 1 12334557777888777777 5778999999999999999873 26
Q ss_pred CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|++|+.+||+++++++||+|+|++ +++|..|+..+ +|.||+.+.|||.|
T Consensus 234 CLiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~stf---fpaLqG~~~KMSAS 282 (397)
T KOG2145|consen 234 CLIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHSTF---FPALQGAQTKMSAS 282 (397)
T ss_pred eeceeeccCChHHHhhhhhhhhhC------------------CCCcceeehhh---chhhhCcccccccC
Confidence 999999999999999999999997 68999999988 99999888999987
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.93 E-value=5.5e-26 Score=232.75 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=123.3
Q ss_pred cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchh-hhhHHHHH----HhccCCHHHHh
Q 023084 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGWLN 180 (287)
Q Consensus 109 g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~-~~~el~w~----L~~~~t~~~L~ 180 (287)
|++++||+|||||++|+ +|.++|++.++++++.|.|+|+|++ ++|+|+|+.. .+...||. ++..+|+.|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999994 7999999999999999999999999 9999999963 33446775 77899999999
Q ss_pred chhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (287)
Q Consensus 181 R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f 260 (287)
|+.. .+..++++++||+||++||+++++|++.+|+|||+.++||||++++.+
T Consensus 486 r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~------------------- 537 (682)
T PTZ00348 486 ELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI------------------- 537 (682)
T ss_pred HHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-------------------
Confidence 9762 255699999999999999999999999999999999999999999532
Q ss_pred CCCceecCCCCcccccCCCCCCCCCC
Q 023084 261 KVPEPLIPPAGARVMSLTDGLSKVLT 286 (287)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (287)
.|.++++.+ +|+|..|..+|++
T Consensus 538 -~~~~~~~~~---~p~l~~~~~~~~~ 559 (682)
T PTZ00348 538 -ECIQALEGR---VPALHRPGAAPAV 559 (682)
T ss_pred -cchhhcCCC---CccccccccccCC
Confidence 344455544 7788766666665
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.2e-20 Score=176.89 Aligned_cols=185 Identities=19% Similarity=0.282 Sum_probs=133.4
Q ss_pred CceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH--
Q 023084 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL-- 143 (287)
Q Consensus 78 ~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l-- 143 (287)
|.+||+||+||.. +|+||+++.| .++.+|. ||+++-+|++.+|.++ |. +.+.++.|.+.+...+.
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5799999999975 9999999865 8888988 9999999999999998 41 12334445443333222
Q ss_pred --------HcCCCCCceEEEEccchhhhhHH-HHH--HhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhh
Q 023084 144 --------ACGIDNSKASVFVQSHVRAHVEL-MWL--LSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASD 211 (287)
Q Consensus 144 --------A~GiDp~kt~i~~qS~~~~~~el-~w~--L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaAD 211 (287)
.+|....+-.|+.|++|-+--.+ -++ .+.++.++ .|+.-..++.+.. ++..++.||+|-+|||+|
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~Rvg---sMLar~SV~~RLes~~GlSftEFtYQ~lQAYD 218 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVG---SMLARDSVKSRLESPNGLSFTEFTYQLLQAYD 218 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHH---HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHh
Confidence 33555567889999998432222 222 33355555 4444445555554 568999999999999999
Q ss_pred hhh----cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 212 ILL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 212 Il~----~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
.++ +.++++.||.|||.||+.+-|+.+|+-.. .+.+|....+|++.. +| .|..||
T Consensus 219 fy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~------------~~~vfGlT~PLlTss--------tG-~KlGKS 277 (467)
T KOG2623|consen 219 FYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPI------------QAFVFGLTFPLLTSS--------TG-AKLGKS 277 (467)
T ss_pred HHHHHHhcCeeEEecccccccccchHHHHHHHhccc------------ccceeeeeeeeEecC--------cc-hhhccC
Confidence 998 48999999999999999999999998631 023466666676654 67 477776
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.68 E-value=2e-16 Score=144.92 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=114.7
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-------~i~~q 157 (287)
.|||.|||||+.+++.+|...+. +..+++-|.| |++ .....+....+.+++.++||+||+. .+|+|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 57899999999999999988877 5555555888 342 2345667888899999999999974 38999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla 237 (287)
|+..+.-+.. +++.. ..| =|..+|++.++.|...++.++|+.|.|+..+....+.++
T Consensus 83 S~r~~~y~~~-----------~~~L~-------~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEIYRKY-----------AEKLL-------EKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHHHHHH-----------HHHHH-------HcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 9853321111 01110 011 278999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+.|| ++.|...+.+. |++. +| .||||+
T Consensus 140 ~aLg------------------~~~p~~~h~pl---l~~~-~g-~KLSKR 166 (239)
T cd00808 140 EALG------------------WEPPKFAHLPL---ILNP-DG-KKLSKR 166 (239)
T ss_pred HHcC------------------CCCCceEeecc---ccCC-CC-CcccCC
Confidence 9997 55677666665 7776 67 499996
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.58 E-value=1.4e-14 Score=121.42 Aligned_cols=62 Identities=35% Similarity=0.363 Sum_probs=54.4
Q ss_pred chHHHhhhhhhcCC---CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC
Q 023084 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (287)
Q Consensus 204 YPvLQaADIl~~~a---dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg 280 (287)
||+.|+||++.+.. |++++|.||++|++..++++++++. ...|..++.++ |.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~~~---l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTFGR---VMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEeCC---eECC-CC
Confidence 99999999999998 9999999999999999999999861 23588888776 8776 56
Q ss_pred CCCCCCC
Q 023084 281 LSKVLTI 287 (287)
Q Consensus 281 ~~KMSKS 287 (287)
+|||||
T Consensus 137 -~KmSks 142 (143)
T cd00802 137 -TKMSKS 142 (143)
T ss_pred -CcCCCC
Confidence 599998
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.33 E-value=8.8e-12 Score=113.78 Aligned_cols=148 Identities=21% Similarity=0.227 Sum_probs=110.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhhh
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~~ 164 (287)
.|||.|||||...++.+|..-+. +.++++-|-|. ++ .....+....+.+++.++||++|+ .+|+||+..+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDT----DP--ERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcC----CC--CCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHH
Confidence 57899999999999989876655 66666667776 32 134556788899999999999996 378999864321
Q ss_pred HHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhh
Q 023084 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (287)
Q Consensus 165 el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~ 244 (287)
+.+ +++.. ..| |..+|=.--+.|=...+.++|.-|.|+..+-..-+.+++.++
T Consensus 82 ~~~-----------~~~L~-------~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 82 RAY-----------AEELI-------KKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred HHH-----------HHHHH-------HcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 110 11111 111 566776666777777899999999999999999999999987
Q ss_pred CCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 245 g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|...+.|. |.+. +| +||||+
T Consensus 135 ---------------~~~P~~~H~pl---l~~~-~g-~KLSKr 157 (230)
T cd00418 135 ---------------WEPPRFYHFPR---LLLE-DG-TKLSKR 157 (230)
T ss_pred ---------------CCCCeEEEeee---eeCC-CC-CCccCc
Confidence 56798888876 7775 66 599996
No 30
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.06 E-value=1.2e-09 Score=103.27 Aligned_cols=172 Identities=19% Similarity=0.244 Sum_probs=113.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhh-
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~- 163 (287)
.|||.|||||+..++.+|...+. |.+.++-|.|. ++ .....+....+.+++.++||++|. ..|+||+..+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHHH
Confidence 46699999999999999987766 66777778885 32 234556788899999999999996 47889996432
Q ss_pred ---hH----HHHHHhccCCHHHHhchhc--------HHHHHhhhCC-CC--------c---------------------c
Q 023084 164 ---VE----LMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN--------V---------------------G 198 (287)
Q Consensus 164 ---~e----l~w~L~~~~t~~~L~R~~~--------~k~~~~~~~~-~~--------i---------------------~ 198 (287)
.+ ..+.+.|.+|-.++++..+ |.-.-+.... +. + .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 11 1123779999998865421 0000000000 00 0 0
Q ss_pred c---------hhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCC
Q 023084 199 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (287)
Q Consensus 199 ~---------g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~ 269 (287)
+ |..+|=+-=+.|=...+.++|.=|.|...+-..-..|.+.|+ ++.|+..|.|
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p 227 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP 227 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee
Confidence 0 222222222222233478899999999888777777888776 6789988888
Q ss_pred CCcccccCCCCCCCCCCC
Q 023084 270 AGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 270 ~~~~l~gL~dg~~KMSKS 287 (287)
+ |.+. +| +|+||+
T Consensus 228 l---l~~~-~g-~kLSKr 240 (299)
T PRK05710 228 L---VLNA-DG-QKLSKQ 240 (299)
T ss_pred c---ccCC-CC-Cccccc
Confidence 7 8786 78 599995
No 31
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.98 E-value=4.8e-09 Score=104.92 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=113.6
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCce------EEEEc
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ 157 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt------~i~~q 157 (287)
.|||.|||||...++.+|..-.. |.++++-|-|. |+ ....+..+.+.+++.++||++|.. -.|+|
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q 84 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ 84 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence 46799999999999999976655 65666667665 33 335557788899999999999953 15999
Q ss_pred cchhh-h---hHHHHH----HhccCCHHHHhchhc-------------------HHHHHhhh--CC---------CC---
Q 023084 158 SHVRA-H---VELMWL----LSSATPIGWLNKMIQ-------------------FKEKSHKA--GG---------EN--- 196 (287)
Q Consensus 158 S~~~~-~---~el~w~----L~~~~t~~~L~R~~~-------------------~k~~~~~~--~~---------~~--- 196 (287)
|+..+ | .+.... +.|.||-.+|+..-. -.++.+.. |. +.
T Consensus 85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~ 164 (476)
T PRK01406 85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV 164 (476)
T ss_pred hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence 99533 2 222111 678999988764311 00000000 00 00
Q ss_pred -----------ccchhhh---------chHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccC
Q 023084 197 -----------VGVALLT---------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (287)
Q Consensus 197 -----------i~~g~~~---------YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g 253 (287)
.+...+- ||..+.||++- .+.|+|..|.||..+.-.-..+.+.++
T Consensus 165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------------ 232 (476)
T PRK01406 165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------------ 232 (476)
T ss_pred EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------------
Confidence 0001111 55556666643 588999999999999999999999886
Q ss_pred CCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 254 ~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|...|.++ |.++ +| +||||.
T Consensus 233 ------~~~p~~~H~pl---i~~~-~g-~klSKR 255 (476)
T PRK01406 233 ------WEVPVFAHLPL---ILGP-DG-KKLSKR 255 (476)
T ss_pred ------CCCCeEEEeee---eeCC-CC-CcccCc
Confidence 45688777776 7776 67 599994
No 32
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.93 E-value=5.6e-09 Score=105.03 Aligned_cols=177 Identities=17% Similarity=0.180 Sum_probs=114.9
Q ss_pred eEEEeecCC--CcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHH-HHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKASVF 155 (287)
Q Consensus 80 ~iytGi~PT--G~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~-~i~~~~~~~i~~~lA~GiDp~kt~i~ 155 (287)
.+.+-|.|| |.|||||...++.+|..-+. |.++++-|-|. |++ ...+..+.+.+++.++|||+|. ..|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 356777776 99999999999999976665 66667667776 332 3445677788999999999985 479
Q ss_pred Eccchhh-h---hHHHHH----HhccCCHHHHhchhc----------HHHHHhhh-------C---------CCC--c--
Q 023084 156 VQSHVRA-H---VELMWL----LSSATPIGWLNKMIQ----------FKEKSHKA-------G---------GEN--V-- 197 (287)
Q Consensus 156 ~qS~~~~-~---~el~w~----L~~~~t~~~L~R~~~----------~k~~~~~~-------~---------~~~--i-- 197 (287)
+||+..+ | .+.... +.|.||-.+|+.+-. |....+.. + ++. +
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~ 155 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI 155 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence 9999532 2 222211 678999988765421 10000000 0 000 0
Q ss_pred ---cchhhhch-------HHH---------hh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084 198 ---GVALLTYP-------VLM---------AS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (287)
Q Consensus 198 ---~~g~~~YP-------vLQ---------aA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~ 255 (287)
=.|.+.++ +++ -+ |=...+.+.|..|.||..|.-.-..+.+.++
T Consensus 156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------------- 221 (513)
T PRK14895 156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------------- 221 (513)
T ss_pred EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence 01122221 111 11 1122379999999999999998888988886
Q ss_pred CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|...|.++ |.++ +| +||||.
T Consensus 222 ----~~~p~~~H~pl---v~~~-~g-~KLSKR 244 (513)
T PRK14895 222 ----YAVPSMTHIPL---IHGA-DG-AKLSKR 244 (513)
T ss_pred ----CCCCeEEEEEe---EEcC-CC-Cccccc
Confidence 45688888887 8887 67 599995
No 33
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.89 E-value=2.1e-08 Score=100.20 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=109.4
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~ 163 (287)
.|||.|||||...++.+|..-.. |.++++-|-|. ++ .....+..+.+.+++.++||++|. ..|+||+..+ |
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT----DL--ERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--ccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 47799999999999999976555 65666667665 32 123456778899999999999995 4899999533 2
Q ss_pred hHHHHH-------HhccCCHHHHhchhc-------------------HHHHHhhh--C---------CCCc-------cc
Q 023084 164 VELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHKA--G---------GENV-------GV 199 (287)
Q Consensus 164 ~el~w~-------L~~~~t~~~L~R~~~-------------------~k~~~~~~--~---------~~~i-------~~ 199 (287)
.+..-. +.|.||-.+++.+-. -.++.+.. + ++.. =.
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 222111 668999888764311 11110000 0 0000 00
Q ss_pred hhhhc----------------hHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084 200 ALLTY----------------PVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (287)
Q Consensus 200 g~~~Y----------------PvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f 260 (287)
|.+.+ |..+ +.|=...+.|+|..|.||..+...-..+.+.++ +
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~ 223 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W 223 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence 11111 1111 112122479999999999999999999999886 4
Q ss_pred CCCceecCCCCcccccCCCCCCCCCCC
Q 023084 261 KVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
..|...|.+. +.++ +| +||||.
T Consensus 224 ~~p~~~H~p~---l~~~-~g-~kLSKR 245 (470)
T TIGR00464 224 KIPVFAHLPM---ILDE-DG-KKLSKR 245 (470)
T ss_pred CCCeEEEEee---eecC-CC-cccccc
Confidence 5687777776 6666 67 599994
No 34
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.80 E-value=3.9e-08 Score=91.99 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=110.0
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~ 163 (287)
.|||.|||||...++.+|..-+. |..+++-|-|. ++ .....+..+.+.+++.++||++|+ ..++||+..+ |
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wLGl~wDe-~~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL----DP--PREVPGAADDILRTLEAYGLHWDG-EVVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC----CC--CCCChHHHHHHHHHHHHcCCCCCC-CeeeeeCCHHHH
Confidence 47899999999999999976655 65666667776 32 123445677889999999999996 3689999643 2
Q ss_pred hHHHHH-------HhccCCHHHHhchh-----cHHHHHhh-----hCC---------C-Cc-----cchhhh--------
Q 023084 164 VELMWL-------LSSATPIGWLNKMI-----QFKEKSHK-----AGG---------E-NV-----GVALLT-------- 203 (287)
Q Consensus 164 ~el~w~-------L~~~~t~~~L~R~~-----~~k~~~~~-----~~~---------~-~i-----~~g~~~-------- 203 (287)
.+..-. +.|.+|-.++++.. .|.-.-+. .+. + .+ -.|.+.
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 221111 66999999886541 11100000 000 0 00 011111
Q ss_pred ---------chHHHhhhh---hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCC
Q 023084 204 ---------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (287)
Q Consensus 204 ---------YPvLQaADI---l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~ 271 (287)
||..+=|.. ...+.++|.=|.|...+--.-.-|.+.|+ ++.|+..+.|+
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~pl- 221 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLPL- 221 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEechh-
Confidence 222222222 22478999999999888877777888775 56798888886
Q ss_pred cccccCCCCCCCCCCC
Q 023084 272 ARVMSLTDGLSKVLTI 287 (287)
Q Consensus 272 ~~l~gL~dg~~KMSKS 287 (287)
|.+. +| +|+||+
T Consensus 222 --l~~~-~g-~kLSKR 233 (272)
T TIGR03838 222 --VVNA-DG-EKLSKQ 233 (272)
T ss_pred --hhCC-CC-Ceeecc
Confidence 7786 78 599995
No 35
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.1e-08 Score=98.98 Aligned_cols=177 Identities=20% Similarity=0.201 Sum_probs=114.6
Q ss_pred EEEeecC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 81 IVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 81 iytGi~P--TG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
|.+=|.| ||.+||||...++.+|..-+. |.++++-|-|. ++. ....+....+.+++.++||++|.. +|+|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 5555555 599999999999999976666 66777777776 321 335567778888999999999974 8999
Q ss_pred cchhh-hhHHHH-H------HhccCCHHHHhchhc-----------HH---------HHHhhhCC----------C----
Q 023084 158 SHVRA-HVELMW-L------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG----------E---- 195 (287)
Q Consensus 158 S~~~~-~~el~w-~------L~~~~t~~~L~R~~~-----------~k---------~~~~~~~~----------~---- 195 (287)
|+..+ |.+..- + +.|.+|-.+|+.+-. +. ++....+. +
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 99643 222111 1 568999876655421 10 11111000 0
Q ss_pred -----Cccchhhhch------HHHhhhhhh------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084 196 -----NVGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (287)
Q Consensus 196 -----~i~~g~~~YP------vLQaADIl~------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~ 252 (287)
+.-.|.+..+ ++.-+|.+. ++.++|.-|.|...+=..-+-|.+.|+
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------- 231 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------- 231 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence 0011223332 333344433 368999999999988888888888776
Q ss_pred CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|...+.+. |.+ -+| +||||+
T Consensus 232 -------~~~P~~~H~~l---i~~-~~g-~kLSKr 254 (472)
T COG0008 232 -------WPPPVYAHLPL---LLN-EDG-KKLSKR 254 (472)
T ss_pred -------CCCCcEEEeee---eec-CCC-CeecCc
Confidence 66788888776 776 466 599996
No 36
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.69 E-value=1.1e-07 Score=94.14 Aligned_cols=170 Identities=21% Similarity=0.262 Sum_probs=107.6
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~- 162 (287)
.|||.|||||...++.+|..-+. |.++++-|-|. |+ ....+....+.+++.++||++|. .|+||+..+
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~ 77 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWDK--LVYQSENLKF 77 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCCC--CeehhccHHH
Confidence 47899999999999999976666 66666667775 33 23456777889999999999995 699999532
Q ss_pred h---hHHHHH----HhccCCHHHHhchhcHHHH----------Hhh--------hC---------CC-Cc-----cchhh
Q 023084 163 H---VELMWL----LSSATPIGWLNKMIQFKEK----------SHK--------AG---------GE-NV-----GVALL 202 (287)
Q Consensus 163 ~---~el~w~----L~~~~t~~~L~R~~~~k~~----------~~~--------~~---------~~-~i-----~~g~~ 202 (287)
| .+.... +.|.||-.+++.+-.-... .+. .+ ++ .+ -.|.+
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~v~G~i 157 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDAIKGEV 157 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeeccceeE
Confidence 2 222221 6789999887644221000 000 00 00 00 01111
Q ss_pred hch----------------HHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC
Q 023084 203 TYP----------------VLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP 263 (287)
Q Consensus 203 ~YP----------------vLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P 263 (287)
.++ ..+ +.|=...+.++|.=|.|...+--.-..|.+.|+ ++.|
T Consensus 158 ~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg------------------~~~p 219 (433)
T PRK12410 158 SFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALG------------------YNKE 219 (433)
T ss_pred EeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcC------------------CCCC
Confidence 222 111 122222478899999999888777777777775 4554
Q ss_pred -ceecCCCCcccccCCCCCCCCCCC
Q 023084 264 -EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 264 -~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|.|+ |.+- +| +|+||.
T Consensus 220 p~f~Hlpl---i~~~-~g-~KLSKR 239 (433)
T PRK12410 220 ITYAHLPI---ILNE-EG-KKMSKR 239 (433)
T ss_pred CeEEEeee---eeCC-CC-Ceeecc
Confidence 7778787 7775 77 699995
No 37
>PLN02627 glutamyl-tRNA synthetase
Probab=98.69 E-value=1.1e-07 Score=96.04 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=110.9
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE----
Q 023084 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS---- 153 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~---- 153 (287)
++=.-=.|||.|||||...++.+|..-+. |.++++-|-|. |+ ....+..+.+.+++.++||++|...
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg 119 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVGG 119 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence 33333456699999999999999977666 66666667775 32 2345677788999999999999642
Q ss_pred ---EEEccchhh-h---hHHHH----HHhccCCHHHHhchhcH-------------------HHHHhhh--CC-------
Q 023084 154 ---VFVQSHVRA-H---VELMW----LLSSATPIGWLNKMIQF-------------------KEKSHKA--GG------- 194 (287)
Q Consensus 154 ---i~~qS~~~~-~---~el~w----~L~~~~t~~~L~R~~~~-------------------k~~~~~~--~~------- 194 (287)
-|+||+..+ | .+... .+.|.||-.+++.+-.- .+..+.. +.
T Consensus 120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k 199 (535)
T PLN02627 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFR 199 (535)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEE
Confidence 489999533 2 22111 16789998887644211 0000000 00
Q ss_pred ----CCc-----cchhhhchHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCC
Q 023084 195 ----ENV-----GVALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGG 246 (287)
Q Consensus 195 ----~~i-----~~g~~~YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~ 246 (287)
..+ =-|.+.++.=..-|.+. .+.++|.=|.|...+--.-.-|.+.|+
T Consensus 200 ~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg----- 274 (535)
T PLN02627 200 VPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG----- 274 (535)
T ss_pred cCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC-----
Confidence 000 01222221111112222 368899999998887777777777775
Q ss_pred ccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 247 ~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|+..|.|+ |.+- || +||||.
T Consensus 275 -------------~~~P~f~Hlpl---i~~~-~g-~KLSKR 297 (535)
T PLN02627 275 -------------FPMPRFAHVSL---ILAP-DR-SKLSKR 297 (535)
T ss_pred -------------CCCCeEEEccc---eeCC-CC-Cccccc
Confidence 56798888887 7775 67 599994
No 38
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.67 E-value=7.9e-08 Score=96.97 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=108.8
Q ss_pred EEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 81 iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
+.+=|- |||.|||||+..++.+|..-+. +..+++-|-|. ++. ....+..+.+.+++.++|++++. +++|
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT----Dp~--R~~~e~~~~I~~dL~WLGl~wD~--~~~q 83 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT----NPS--KEKAEFEESIIEDLGKIEIKPDS--VSFT 83 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC----CCC--ccchHHHHHHHHHHHHhCCCCCC--Cccc
Confidence 444454 5699999999999989876555 55555556554 321 34566788899999999999995 7899
Q ss_pred cchhh-hhHHHHH-------HhccCCHHHHhchh-----------c-------HHHHHhh-hCC-------------CCc
Q 023084 158 SHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-AGG-------------ENV 197 (287)
Q Consensus 158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~-----------~-------~k~~~~~-~~~-------------~~i 197 (287)
|+..+ |.+.+-. +.|.+|-.+++..- + |+.+.+- ..+ .+.
T Consensus 84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~n~ 163 (523)
T PLN03233 84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNG 163 (523)
T ss_pred cccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCCCC
Confidence 99643 3222222 66899988874321 1 1111100 000 000
Q ss_pred cchh------------------hhchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084 198 GVAL------------------LTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (287)
Q Consensus 198 ~~g~------------------~~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~ 256 (287)
++.- ..||..+=|-.+- .+.+++.-|.|...+-..-.-+.+.++
T Consensus 164 ~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg--------------- 228 (523)
T PLN03233 164 TLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG--------------- 228 (523)
T ss_pred CCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC---------------
Confidence 1110 0245444333322 478999999999988888888888876
Q ss_pred CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|.. +.+. ..++ +|+ ||||+
T Consensus 229 ---~~~P~~-~~f~---rln~-~~~-kLSKR 250 (523)
T PLN03233 229 ---LRRPRI-HAFA---RMNF-MNT-VLSKR 250 (523)
T ss_pred ---CCCCee-eeeE---EECC-CCC-ccccc
Confidence 456765 3343 5566 574 99995
No 39
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.65 E-value=3.1e-07 Score=87.35 Aligned_cols=172 Identities=19% Similarity=0.111 Sum_probs=103.9
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhh-
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~- 163 (287)
.|||.|||||+..++.+|..-+. |.++++-|-|. ++ .....+..+.+++++.++||++| -..|+||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt----D~--~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y 81 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT----DP--ERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIY 81 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS----ST--TTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc----cc--ccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHH
Confidence 47799999999999988876555 55666667776 32 13345677889999999999998 368889996432
Q ss_pred ---hHHHHH----HhccCCHHHHhchhcH---------------------HHHHhh--hC---------CCC-------c
Q 023084 164 ---VELMWL----LSSATPIGWLNKMIQF---------------------KEKSHK--AG---------GEN-------V 197 (287)
Q Consensus 164 ---~el~w~----L~~~~t~~~L~R~~~~---------------------k~~~~~--~~---------~~~-------i 197 (287)
.+.... +.|.||-.+++....- .++.+. .+ +.. .
T Consensus 82 ~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D~ 161 (314)
T PF00749_consen 82 QEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRDL 161 (314)
T ss_dssp HHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEET
T ss_pred HHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccccccccccC
Confidence 221111 6689988876644321 000000 00 000 0
Q ss_pred cch-------hhhchHHHhhhh------------hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 023084 198 GVA-------LLTYPVLMASDI------------LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (287)
Q Consensus 198 ~~g-------~~~YPvLQaADI------------l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~ 258 (287)
-.| .+-.++++=+|. ...+.++|.=|.|-..+-..-.-|.+.|+
T Consensus 162 v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg----------------- 224 (314)
T PF00749_consen 162 VRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALG----------------- 224 (314)
T ss_dssp TTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCT-----------------
T ss_pred cceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhC-----------------
Confidence 011 112222332322 33479999999999988888888888886
Q ss_pred ccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 259 IFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 259 ~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|...+.|+ +.+- +| +|+||+
T Consensus 225 -~~~P~~~H~pl---~l~~-~g-~kLSKR 247 (314)
T PF00749_consen 225 -WPPPPYAHLPL---ILNE-DG-KKLSKR 247 (314)
T ss_dssp -SSS-EEEEEEE---EEET-TS-SBSSTT
T ss_pred -CCCcceEeeee---eecC-CC-cEechh
Confidence 45688777776 6665 67 599996
No 40
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.64 E-value=1.5e-07 Score=91.03 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=54.6
Q ss_pred CceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE-EEEEecceeec---------------C-C--------C-C
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET-LFFIVDLHAIT---------------L-P--------Y-D 127 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~-~ilIaD~hA~t---------------~-~--------~-d 127 (287)
+..|=||+-|||.+||||+...+ .-+.+.++ |+++ +++..|.|.-+ + | + .
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 56788899999999999988655 22344443 8887 55789999321 1 1 0 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (287)
Q Consensus 128 ~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~ 160 (287)
++-+.++...+.+.+..+||+.+ +|.+++.
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~ 129 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQM 129 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCc
Confidence 23355666777788888999764 7777774
No 41
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.64 E-value=1.5e-07 Score=96.12 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=108.9
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
+.+=| +|||.|||||+..++.+|..-+. +..+++-|-|. +|. ....+..+.+.+++.++||++|. .+++|
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT----Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~Q 125 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT----NPS--KEKEHFEQAILDDLATLGVSWDV-GPTYS 125 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC----CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceeec
Confidence 44555 45699999999999989876665 55566556665 321 34556788899999999999985 37889
Q ss_pred cchhh-hhHHHHH-------HhccCCHHHHhchh------c------------HHHHHh-hhCC-C------------Cc
Q 023084 158 SHVRA-HVELMWL-------LSSATPIGWLNKMI------Q------------FKEKSH-KAGG-E------------NV 197 (287)
Q Consensus 158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~------~------------~k~~~~-~~~~-~------------~i 197 (287)
|+..+ |.+.+-. +.|.++-.+++... . |+.+.. ...+ . +.
T Consensus 126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~ 205 (601)
T PTZ00402 126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENK 205 (601)
T ss_pred cccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCC
Confidence 99643 2222221 56788877664321 0 111110 0000 0 00
Q ss_pred cch-h-----------------hhchHHHhhhhh---hcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084 198 GVA-L-----------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (287)
Q Consensus 198 ~~g-~-----------------~~YPvLQaADIl---~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~ 256 (287)
+++ . -.||..+=|-.+ ..+.+++.-|.|...+-..-.-|.+.|+
T Consensus 206 ~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg--------------- 270 (601)
T PTZ00402 206 AMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG--------------- 270 (601)
T ss_pred CccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC---------------
Confidence 000 0 133443333222 2478999999999988888888888775
Q ss_pred CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|...+.+ +.++ +|+ ||||+
T Consensus 271 ---~~~P~~~h~~----rLn~-~g~-kLSKR 292 (601)
T PTZ00402 271 ---IRKPIVEDFS----RLNM-EYS-VMSKR 292 (601)
T ss_pred ---CCCceEEEEe----eEcC-CCC-ccccc
Confidence 4567777665 2466 674 99995
No 42
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.63 E-value=1.2e-07 Score=95.58 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=40.1
Q ss_pred cCCCEEEeeccchH-HHHHHHHHHH-HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~-hi~LaRdla~-r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+.|.|.||.. +..+++++++ .++ .+.|..+...+ +..- +| +|||||
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~~---v~~~-~G-~KMSKS 284 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYEL---FLDK-KG-EKISKS 284 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeeee---EEeC-CC-Cccccc
Confidence 47999999999999 9999999999 665 35677777665 5543 45 699998
No 43
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.62 E-value=2.1e-07 Score=92.43 Aligned_cols=170 Identities=21% Similarity=0.177 Sum_probs=107.6
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~- 162 (287)
.|||.|||||+..++.+|..-+. |.++++-|-|. |+ ....+....+.+++.++|+++|. .|+||+..+
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~ 80 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDR 80 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHH
Confidence 46799999999999999976655 66666667776 33 23455677888899999999994 799998532
Q ss_pred hhHHHH-------HHhccCCHHHHhchhc----------H---------HHHHhhh--CC----------CC-----ccc
Q 023084 163 HVELMW-------LLSSATPIGWLNKMIQ----------F---------KEKSHKA--GG----------EN-----VGV 199 (287)
Q Consensus 163 ~~el~w-------~L~~~~t~~~L~R~~~----------~---------k~~~~~~--~~----------~~-----i~~ 199 (287)
+.+..- .+.|.||-.+++.+-. | .+..+.. +. .. .=-
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~ 160 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIR 160 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEee
Confidence 211111 1668999888754321 0 0000000 00 00 001
Q ss_pred hhhhchHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 023084 200 ALLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (287)
Q Consensus 200 g~~~YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f 260 (287)
|.+.++.-..-|.+. .+.++|.=|.|...+--.-.-|.+.|+ +
T Consensus 161 G~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~ 222 (445)
T PRK12558 161 GEQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------A 222 (445)
T ss_pred eEeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------C
Confidence 223222222223332 268899999998887776667777775 5
Q ss_pred CCCceecCCCCcccccCCCCCCCCCCC
Q 023084 261 KVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 261 ~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+.|+..|.|+ |.+- || +|+||.
T Consensus 223 ~~P~f~H~pl---i~~~-~g-~KLSKR 244 (445)
T PRK12558 223 KPPVFAHLSL---LTGA-DG-KGLSKR 244 (445)
T ss_pred CCCeEEEccc---ccCC-Cc-cccccc
Confidence 6798888887 7775 67 699995
No 44
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.61 E-value=1.6e-07 Score=86.43 Aligned_cols=157 Identities=21% Similarity=0.170 Sum_probs=101.5
Q ss_pred EeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHH---HHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084 83 SGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ---QLSKATRETAAIYLACGIDNSKASVFVQS 158 (287)
Q Consensus 83 tGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~---~i~~~~~~~i~~~lA~GiDp~kt~i~~qS 158 (287)
.|-.|||.+||||+..++.+|+.-+. +..+++=|-|. |++ ...+....+.+++.++|++|| +.++||
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS 76 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIAS 76 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccchh
Confidence 45678899999999999988865554 44555557776 332 345566779999999999999 579999
Q ss_pred chh-hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHH---hhhhhhcCCCEEEeeccchHHHHHHH
Q 023084 159 HVR-AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTR 234 (287)
Q Consensus 159 ~~~-~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaR 234 (287)
+.. .+.+..-.|- ++-..|. ..+.+ +. ...||..+ +.|=...+.++|.-|.|-..+-..-.
T Consensus 77 ~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~ 141 (240)
T cd09287 77 DRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQR 141 (240)
T ss_pred ccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHH
Confidence 853 3333221111 0111111 01111 11 12344444 33334468999999999999888888
Q ss_pred HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
-+.+.++ ++.|...+.|. |.. +| +||||.
T Consensus 142 ~l~~~Lg------------------~~~P~~~H~pl---l~~--~~-~kLSKR 170 (240)
T cd09287 142 YIYEYFG------------------WEYPETIHWGR---LKI--EG-GKLSTS 170 (240)
T ss_pred HHHHHcC------------------CCCCcEEeeee---ecC--CC-Ceeccc
Confidence 8888875 56788887775 543 56 799995
No 45
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.54 E-value=5e-07 Score=83.10 Aligned_cols=132 Identities=13% Similarity=0.053 Sum_probs=84.7
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~- 162 (287)
.|||.|||||...++.+|..-+. +.+.++-|-|. |+ ....+..+.+.+++.++||++| ++++||+..+
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 57899999999999988876555 55666667776 43 3455677789999999999999 5799999533
Q ss_pred hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHH
Q 023084 163 HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (287)
Q Consensus 163 ~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r 239 (287)
|.+..-.|-. +-..|... +.+ +. ..+||..| +.|=...+.+.|.-|.|...+-..-.-+.+.
T Consensus 80 Y~~~~~~L~~--------~g~aY~~~--~~~-~~----~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 144 (238)
T cd00807 80 LYEYAEQLIK--------KGKAYVHH--RTG-DK----WCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA 144 (238)
T ss_pred HHHHHHHHHH--------cCCeecCC--CCC-CC----EEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence 3222111110 00001100 001 11 12244444 3444457899999999998887777778887
Q ss_pred Hh
Q 023084 240 VN 241 (287)
Q Consensus 240 ~n 241 (287)
++
T Consensus 145 Lg 146 (238)
T cd00807 145 LR 146 (238)
T ss_pred cC
Confidence 76
No 46
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.50 E-value=1.1e-06 Score=89.75 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=113.4
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
+.+...+=.|||.+||||+..++.+|..-+. +..+++-|-|. ++.......+....+.+++.++|++|+. +++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD~--~~~ 174 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWDE--VVI 174 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCCC--ccC
Confidence 3566777778899999999999988865554 55556566665 3311223455667889999999999984 799
Q ss_pred ccchhh-hhHHHHH-------HhccCCHHHHhchhc------------------HHHHHh----------hhCCC----C
Q 023084 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSH----------KAGGE----N 196 (287)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~t~~~L~R~~~------------------~k~~~~----------~~~~~----~ 196 (287)
||+..+ +.+..-. +.|.++-.++++... |+++.. +...+ +
T Consensus 175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n 254 (567)
T PRK04156 175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN 254 (567)
T ss_pred cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence 999643 2221111 667888776643210 111100 00000 0
Q ss_pred cc------------------chhhhchHHHhh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084 197 VG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (287)
Q Consensus 197 i~------------------~g~~~YPvLQaA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~ 255 (287)
.+ -+-..||.++=| |-...+.+++.-|.|...+-..-..+.+.|+
T Consensus 255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------------- 320 (567)
T PRK04156 255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------------- 320 (567)
T ss_pred CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence 00 011235655433 3334589999999999999888888888876
Q ss_pred CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|...+.+. |. + +|+ |||||
T Consensus 321 ----~~~P~~~H~~~---L~-~-~g~-kLSKR 342 (567)
T PRK04156 321 ----WEYPETIHYGR---LK-I-EGF-VLSTS 342 (567)
T ss_pred ----CCCceEEEcce---ec-C-CCc-eeecc
Confidence 45688888775 54 4 674 99997
No 47
>PLN02907 glutamate-tRNA ligase
Probab=98.37 E-value=1.9e-06 Score=90.32 Aligned_cols=154 Identities=15% Similarity=0.118 Sum_probs=94.2
Q ss_pred eEEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
.+.+=|- |||.|||||...++.+|..-+. |.++++-|-|. ++. ....+....+.+++.++|+++|+ +++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT----dp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~ 284 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT----NPS--KESDEFVENILKDIETLGIKYDA--VTY 284 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--cCChHHHHHHHHHHHHcCCCCCC--ccc
Confidence 4556565 5599999999999988865555 55555556554 321 23456778889999999999995 689
Q ss_pred ccchhh-hhHHHHH-------HhccCCHHHHhchh-----------c-------HHHHHhh-h-C------------CCC
Q 023084 157 QSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSHK-A-G------------GEN 196 (287)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~t~~~L~R~~-----------~-------~k~~~~~-~-~------------~~~ 196 (287)
||+..+ +.+.+-. +.|.++..+++... + |++|..- + + ..+
T Consensus 285 qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~n 364 (722)
T PLN02907 285 TSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPN 364 (722)
T ss_pred ccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCCC
Confidence 999643 2222211 55788877664221 1 1111100 0 0 000
Q ss_pred ccchhh------------------hchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 197 VGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 197 i~~g~~------------------~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++.-+ .||..+=|-.+- .+.+++.-|.|...+-..-.-+.+.++
T Consensus 365 ~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg 430 (722)
T PLN02907 365 KSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG 430 (722)
T ss_pred CCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC
Confidence 111111 155555443332 478999999999998888888888775
No 48
>PLN02859 glutamine-tRNA ligase
Probab=98.35 E-value=1.5e-06 Score=91.17 Aligned_cols=175 Identities=10% Similarity=0.043 Sum_probs=107.2
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
|.+=| +|||.|||||...++.+|..-+. |..+++-|-|. ++. ....+....+.+++.++|++|++ +++|
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT----dp~--r~~~e~~~~I~edL~WLG~~~d~--~~~q 336 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT----NPE--AEKKEYIDHIEEIVEWMGWEPFK--ITYT 336 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--ccchHHHHHHHHHHHHcCCCCCC--cccc
Confidence 44444 56699999999999888866555 55555555554 321 24556778889999999999985 6899
Q ss_pred cchh-hhhHHHHH-------HhccCCHHHHhchhc------------------HHHHHhh-hC-------------CCCc
Q 023084 158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-AG-------------GENV 197 (287)
Q Consensus 158 S~~~-~~~el~w~-------L~~~~t~~~L~R~~~------------------~k~~~~~-~~-------------~~~i 197 (287)
|++. .+.+.+-. +.|.++-.+++..-. |.+|... +. ..+.
T Consensus 337 Sd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~n~ 416 (788)
T PLN02859 337 SDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQNDNF 416 (788)
T ss_pred cHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCCCc
Confidence 9975 23232221 568888877643211 2222110 00 0000
Q ss_pred ------------cc------hhhhchHHHhhhhhh---cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 023084 198 ------------GV------ALLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (287)
Q Consensus 198 ------------~~------g~~~YPvLQaADIl~---~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~ 256 (287)
.. -..+||..-=|-.+. .+.++++.|.|...+-..-.-+.+.|+
T Consensus 417 ~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg--------------- 481 (788)
T PLN02859 417 NMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG--------------- 481 (788)
T ss_pred eeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC---------------
Confidence 00 012355543333322 479999999998888777777777775
Q ss_pred CcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 257 GAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+..|...+.+ ..++ +|+ ||||+
T Consensus 482 ---~~~P~~~~f~----rLn~-~~t-~LSKR 503 (788)
T PLN02859 482 ---LYQPYVWEYS----RLNV-TNT-VMSKR 503 (788)
T ss_pred ---CCCCcEEeee----eECC-CCC-cccCc
Confidence 4567666554 3466 674 99995
No 49
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.02 E-value=5.3e-05 Score=67.90 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=79.8
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee-cCC-----CCHHH-HHHHHHHHHHHHHHcCCCC
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI-TLP-----YDTQQ-LSKATRETAAIYLACGIDN 149 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~-t~~-----~d~~~-i~~~~~~~i~~~lA~GiDp 149 (287)
|++=-|+|++||||+.+.+ .-+.++.+ |++|++. ..|.|.. +.. ..+.+ .......+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5666789999999998754 33344444 8887543 3333311 110 01222 2234456778888999987
Q ss_pred CceEEEEccchhhhhHHHHH-Hhc--cCC--HHHH-hchhcHHHHHhhhCCCCc---cchhhhchH---HHhhhhhhcCC
Q 023084 150 SKASVFVQSHVRAHVELMWL-LSS--ATP--IGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDILLYQS 217 (287)
Q Consensus 150 ~kt~i~~qS~~~~~~el~w~-L~~--~~t--~~~L-~R~~~~k~~~~~~~~~~i---~~g~~~YPv---LQaADIl~~~a 217 (287)
+ .++..|+........|. |.. ... -+.+ -....|+. . ++-+ +=|..+|.. --+.|=+.+++
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~----~-~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~ 158 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD----D-KDRVLVRSDGTYTYFTRDIAYHLDKFERGA 158 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC----C-CCeEEEECCCCccchHHHHHHHHHHHhcCC
Confidence 5 34555654222222222 110 000 0000 00000100 0 0000 225566752 22222223578
Q ss_pred CEE--EeeccchHHHHHHHHHHHHHh
Q 023084 218 DFV--PVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 218 dlv--pvG~DQ~~hi~LaRdla~r~n 241 (287)
|.+ .+|.||..|+.--+.+++.++
T Consensus 159 ~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 159 DKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 888 999999999999999999987
No 50
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.92 E-value=2.8e-05 Score=79.14 Aligned_cols=94 Identities=14% Similarity=0.041 Sum_probs=64.3
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
+.+=| .|||.|||||+..++.+|..-+. +..+++-|-|. ++. ....+..+.+.+++.++||+||. .+++|
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~q 102 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT----NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYA 102 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceee
Confidence 44445 45699999999999988866555 55555555554 321 24556778889999999999953 47899
Q ss_pred cchhh-hhHHHHH-------HhccCCHHHHhc
Q 023084 158 SHVRA-HVELMWL-------LSSATPIGWLNK 181 (287)
Q Consensus 158 S~~~~-~~el~w~-------L~~~~t~~~L~R 181 (287)
|+..+ +.+.+.. +.|.+|-.++++
T Consensus 103 S~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~ 134 (554)
T PRK05347 103 SDYFDQLYEYAVELIKKGKAYVDDLSAEEIRE 134 (554)
T ss_pred ecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence 98643 3333332 568888877643
No 51
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.92 E-value=4.3e-05 Score=60.89 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=40.9
Q ss_pred EEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHH
Q 023084 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 140 (287)
Q Consensus 81 iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~ 140 (287)
+++|-.+ +.+|+||+.. ++.+.++++ .+++.++|.++...+.++..++++.+...+
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~ 57 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEE 57 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHH
Confidence 5667777 8999999987 678877764 689999999988765555555555544443
No 52
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.89 E-value=4.2e-05 Score=77.55 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=53.1
Q ss_pred CceEEEeecCCCcchhhhHHHHHHH--HHHH-hc-cCcE-EEEEecce---------------eecC-C----CCH----
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIAL-QN-SYET-LFFIVDLH---------------AITL-P----YDT---- 128 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~--~~~L-Q~-g~~~-~ilIaD~h---------------A~t~-~----~d~---- 128 (287)
+..+=||+-|||.+||||+...+.. +.+. .. |.++ +|+..|.| .+++ | .||
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 6789999999999999998876522 3333 33 7776 67799998 1112 1 122
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084 129 -QQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (287)
Q Consensus 129 -~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~ 160 (287)
.-...+-....+.+..+||+ .+|+.+++.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~ 128 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ 128 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence 22333445566667778996 578888874
No 53
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.88 E-value=3.8e-05 Score=77.88 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=62.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~ 163 (287)
.|||.|||||+..++.+|..-+. +..+++-|-|. ++. ....+..+.+.+++.++|+++|. .+++||+..+ +
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~ 80 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT----NPV--KEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDEL 80 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC----Ccc--cCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHH
Confidence 58899999999999988876555 55555556554 321 34556788899999999999953 3688998643 3
Q ss_pred hHHHHH-------HhccCCHHHHhch
Q 023084 164 VELMWL-------LSSATPIGWLNKM 182 (287)
Q Consensus 164 ~el~w~-------L~~~~t~~~L~R~ 182 (287)
.+.+-. +.|.+|-.++++.
T Consensus 81 ~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 81 YRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 222211 6688888776543
No 54
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.84 E-value=3.4e-05 Score=78.71 Aligned_cols=92 Identities=12% Similarity=0.015 Sum_probs=64.2
Q ss_pred EEEee--cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 81 iytGi--~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
+.+=| .|||.|||||+..++.+|..-+. |..+++-|-|. |+ ....+....+.+++.++||++++ +++
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~~ 122 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VTF 122 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CCc
Confidence 44445 55699999999999988866555 55566556665 33 24556778899999999999985 578
Q ss_pred ccchhh-hhHHHHH-------HhccCCHHHHhc
Q 023084 157 QSHVRA-HVELMWL-------LSSATPIGWLNK 181 (287)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~t~~~L~R 181 (287)
||++.+ +.+.+-. +.|.+|-.++++
T Consensus 123 qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 123 SSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred CchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 998644 2222222 568888887653
No 55
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.84 E-value=4.6e-05 Score=73.94 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=43.0
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeecC--CC-------------------CHH
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY-------------------DTQ 129 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~---~~~LQ~-g~~~-~ilIaD~hA~t~--~~-------------------d~~ 129 (287)
.....+-+|+.|||.+||||+--++.. ...|++ |.++ +|+.+|+.--+. |. ||.
T Consensus 22 ~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~ 101 (360)
T PF01921_consen 22 KEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPF 101 (360)
T ss_dssp -SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TT
T ss_pred CccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCC
Confidence 346789999999999999998765522 234666 7765 667888643322 10 221
Q ss_pred -----HHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084 130 -----QLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (287)
Q Consensus 130 -----~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~ 160 (287)
-.+.+-....+.+-.+||++ +|+.|++.
T Consensus 102 G~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~ 134 (360)
T PF01921_consen 102 GCHESYAEHFNAPFEEFLDEFGIEY---EFISQTEM 134 (360)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTT------EEEECCCC
T ss_pred CCCccHHHHHHHHHHHHHHHcCCce---EEEeHHHh
Confidence 13334445555666789964 78888874
No 56
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.84 E-value=4.5e-05 Score=80.46 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=64.8
Q ss_pred eEEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
.+.+=|- |||.|||||...++.+|..-+. +..+++-|-|. ++. ....+....+.+++.++|++++. .+++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT----d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~ 103 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT----NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYY 103 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC----CCC--cCChHHHHHHHHHHHHcCCCCCC-CceE
Confidence 3555554 5699999999999988866555 55555555554 321 24556778899999999999875 3789
Q ss_pred ccchhh-h---hHHHH----HHhccCCHHHHhch
Q 023084 157 QSHVRA-H---VELMW----LLSSATPIGWLNKM 182 (287)
Q Consensus 157 qS~~~~-~---~el~w----~L~~~~t~~~L~R~ 182 (287)
||+..+ | .+... -+.|.+|-.++++.
T Consensus 104 qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 104 ASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred eecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 999643 2 22111 16788887776433
No 57
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.78 E-value=6.1e-05 Score=76.96 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=63.9
Q ss_pred eEEEeecC--CCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 80 RIVSGVQP--TGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 80 ~iytGi~P--TG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
.+.+=|-| ||.|||||+..++.+|..-+. +..+++-|-|. ++. ....+....+.+++.++|++|+. +++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT----Dp~--R~~~e~~~~I~edL~wLGi~~d~--~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT----DPR--RVKPEAYDMILEDLDWLGVKGDE--VVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC----Ccc--cccHHHHHHHHHHHHHcCCCCCc--ccc
Confidence 45666655 599999999999888865554 54555556554 321 34456778889999999999984 789
Q ss_pred ccchhh-hhHHHHH-------HhccCCHHHHh
Q 023084 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (287)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~t~~~L~ 180 (287)
||+..+ +.+..-. +.|.+|-.+++
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 999643 2222211 66888888775
No 58
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.75 E-value=0.00041 Score=69.36 Aligned_cols=75 Identities=8% Similarity=-0.007 Sum_probs=48.3
Q ss_pred CCCceEE-EeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-cC------CCCHHH-HHHHHHHHHHH
Q 023084 76 SVKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-TL------PYDTQQ-LSKATRETAAI 141 (287)
Q Consensus 76 ~~~~~iy-tGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~-t~------~~d~~~-i~~~~~~~i~~ 141 (287)
+..+.+| +|--|.|.+||||..+.+ .-+.++++ |++|++..+ |.|.- +. ..++.+ .+++...+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455666 888888999999987754 23444444 899988755 44311 10 013333 44567788899
Q ss_pred HHHcCC-CCC
Q 023084 142 YLACGI-DNS 150 (287)
Q Consensus 142 ~lA~Gi-Dp~ 150 (287)
+.++|| .|+
T Consensus 101 ~~~Lgi~~~d 110 (463)
T PRK00260 101 MDALNVLPPD 110 (463)
T ss_pred HHHcCCCCCC
Confidence 999999 454
No 59
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.0015 Score=65.93 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=52.5
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHH---HHHHhc-cCcE-EEEEecceeecC--CC---CHHHHHHH------------
Q 023084 77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (287)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~vg~i~~---~~~LQ~-g~~~-~ilIaD~hA~t~--~~---d~~~i~~~------------ 134 (287)
...++=||+-|||.+||||+.=.+.. ...|.+ |+++ +|+++|.+-=+. |. +++...++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 56789999999999999998643311 233444 7776 778999976554 21 23333332
Q ss_pred ------HH----HHHHHHHHcCCCCCceEEEEccch
Q 023084 135 ------TR----ETAAIYLACGIDNSKASVFVQSHV 160 (287)
Q Consensus 135 ------~~----~~i~~~lA~GiDp~kt~i~~qS~~ 160 (287)
++ ...+.+--+||+ ++++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~---~E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIE---VEFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCc---eEEEEhHHh
Confidence 23 344445567987 468888874
No 60
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.31 E-value=0.0041 Score=58.65 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=37.0
Q ss_pred CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEecceeecCC------C--------------CH-HHHHHHHHHHHH
Q 023084 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITLP------Y--------------DT-QQLSKATRETAA 140 (287)
Q Consensus 87 PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~i-lIaD~hA~t~~------~--------------d~-~~i~~~~~~~i~ 140 (287)
|+|.+||||+.+.+. -+.++++ |++|.+ .-.|.|..-.. . ++ +-++++..++.+
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHKE 90 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999987431 1233333 788744 44566654210 0 11 223344556777
Q ss_pred HHHHcCCCCC
Q 023084 141 IYLACGIDNS 150 (287)
Q Consensus 141 ~~lA~GiDp~ 150 (287)
++.++|++.+
T Consensus 91 ~l~~lgI~~D 100 (312)
T cd00668 91 DFRRLGISYD 100 (312)
T ss_pred HHHHhCcccc
Confidence 8889998654
No 61
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.29 E-value=0.0015 Score=65.90 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=79.4
Q ss_pred eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecceeecCC------CCHHH-HHHHHHHHHHHHHHcC
Q 023084 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDLHAITLP------YDTQQ-LSKATRETAAIYLACG 146 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~hA~t~~------~d~~~-i~~~~~~~i~~~lA~G 146 (287)
.-|+|--|+|++||||..+++ .-+.++.+ |++|.. -+.|+-..+.. ..++. .......+.++|..+|
T Consensus 115 Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~Lg 194 (507)
T PRK01611 115 VEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLG 194 (507)
T ss_pred EEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 335688899999999998765 23444433 888744 46666322210 01222 2334567888899999
Q ss_pred CCCCceEEEEccchh--hhhHHHHH-Hh-c-cCC-HHHHhchhcHHHHHhhhCCC-C----ccchhhhchHHHhhhhhhc
Q 023084 147 IDNSKASVFVQSHVR--AHVELMWL-LS-S-ATP-IGWLNKMIQFKEKSHKAGGE-N----VGVALLTYPVLMASDILLY 215 (287)
Q Consensus 147 iDp~kt~i~~qS~~~--~~~el~w~-L~-~-~~t-~~~L~R~~~~k~~~~~~~~~-~----i~~g~~~YPvLQaADIl~~ 215 (287)
+.+| .+++.|+.. +..+..+. |- . ... .. ....-|+ ...++++ . -+=|..+|-. .||-++
T Consensus 195 I~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~--~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~t---~Dia~~ 265 (507)
T PRK01611 195 VHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVES--DGALWVR--LTEFGDDKDRVLIKSDGTYTYFT---RDIAYH 265 (507)
T ss_pred Ceee--EEeecCcchhcchHHHHHHHHHHCCCEEEee--CCcEEEE--chhhCCCCCeEEEECCCCccchH---HHHHHH
Confidence 9875 345555431 11111111 11 0 000 00 0000000 0011100 0 0224456633 355332
Q ss_pred -------CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 216 -------QSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 -------~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
+--+-.+|.||..|+.--..+++.++
T Consensus 266 ~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg 298 (507)
T PRK01611 266 LYKFERFDRVIYVVGADHHGHFKRLKAALKALG 298 (507)
T ss_pred HHHHhhcCEEEEEECCChHHHHHHHHHHHHHcC
Confidence 34445999999999999999999887
No 62
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.05 E-value=0.015 Score=52.56 Aligned_cols=71 Identities=11% Similarity=-0.022 Sum_probs=42.8
Q ss_pred ceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~i~~~lA~ 145 (287)
....+|-=|-|.+||||....+ .-+.++++ |++|++..+ |.|..=. ..++ +-.+++...+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 3444566666999999977654 22344444 788876643 4442210 0244 33455677788888889
Q ss_pred CCCC
Q 023084 146 GIDN 149 (287)
Q Consensus 146 GiDp 149 (287)
||.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9876
No 63
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0053 Score=60.99 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=65.7
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEE--
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV-- 154 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i-- 154 (287)
+|+=.-=-|||.+|||-+..++.|++...+ |.+++.-|.|- |. ..+....+.+.+++.++||+||..-.
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~g 106 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVG 106 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcC
Confidence 344444456799999999999988876666 66777667775 22 33555666778889999999987543
Q ss_pred -----EEccchhhh----hHHHHH----HhccCCHHHHhch
Q 023084 155 -----FVQSHVRAH----VELMWL----LSSATPIGWLNKM 182 (287)
Q Consensus 155 -----~~qS~~~~~----~el~w~----L~~~~t~~~L~R~ 182 (287)
|.||+..+. .+.... +-|+|+-.||..+
T Consensus 107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l 147 (524)
T KOG1149|consen 107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL 147 (524)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence 688885432 221111 5588888876543
No 64
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=95.32 E-value=0.057 Score=56.52 Aligned_cols=74 Identities=22% Similarity=0.361 Sum_probs=49.9
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecce-eecC-------CCCHH-HHHHHHHHHHHHHH
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLH-AITL-------PYDTQ-QLSKATRETAAIYL 143 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~h-A~t~-------~~d~~-~i~~~~~~~i~~~l 143 (287)
+..|-+++ -|+|.+||||..+.+ .-+.++++ |++|+++.++++ ..-. ..++. ..+++...+.+++.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677777 689999999988755 22344444 889887766543 2211 02443 45567788899999
Q ss_pred HcCCCCCc
Q 023084 144 ACGIDNSK 151 (287)
Q Consensus 144 A~GiDp~k 151 (287)
++|++++.
T Consensus 83 ~l~i~~d~ 90 (673)
T PRK00133 83 GFGISFDN 90 (673)
T ss_pred HhCCCCCC
Confidence 99998873
No 65
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.21 E-value=0.063 Score=55.27 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=47.1
Q ss_pred cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~-~i~~~~~~~i~~~lA~GiDp~k 151 (287)
-|.|.+||||....| .-|.++|+ |++++++- .|-|..-. ..+|+ -+.++.++..++|.+++|+-|.
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~ 93 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDN 93 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 467999999988766 34677777 89987764 45554422 12564 4566778899999999998763
No 66
>PLN02224 methionine-tRNA ligase
Probab=94.33 E-value=0.25 Score=51.56 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=49.5
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceeec--C----C-CCH-HHHHHHHHHHHHHHH
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAIT--L----P-YDT-QQLSKATRETAAIYL 143 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t--~----~-~d~-~~i~~~~~~~i~~~l 143 (287)
++.|-+++ -|+|.+||||..+.+ .-+.++++ |++|++. =.|.|..- . . .++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 35566666 678999999988755 22444544 8888665 55667521 1 0 133 556667778888999
Q ss_pred HcCCCCCc
Q 023084 144 ACGIDNSK 151 (287)
Q Consensus 144 A~GiDp~k 151 (287)
++||++|.
T Consensus 150 ~l~I~~D~ 157 (616)
T PLN02224 150 DLDIAYDK 157 (616)
T ss_pred HcCCCCCc
Confidence 99999883
No 67
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.24 E-value=0.18 Score=51.65 Aligned_cols=75 Identities=21% Similarity=0.205 Sum_probs=47.4
Q ss_pred eEEEee--cCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 80 ~iytGi--~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
.|.+-| ||||.+||||.-.++.++..-|....-+|.--|+ |||. .+-.+-..-+.+++--+||.|++ +=+-
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDD---TNPa--KE~~eFe~~IleDl~~LgIkpd~--~TyT 272 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDD---TNPA--KENEEFEDVILEDLSLLGIKPDR--VTYT 272 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecC---CCcc--hhhHHHHHHHHHHHHHhCcCcce--eeec
Confidence 444444 7789999999998887775445433345555566 3432 12233344567777788999996 4456
Q ss_pred cchh
Q 023084 158 SHVR 161 (287)
Q Consensus 158 S~~~ 161 (287)
||+.
T Consensus 273 SDyF 276 (712)
T KOG1147|consen 273 SDYF 276 (712)
T ss_pred hhhH
Confidence 7653
No 68
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=94.03 E-value=0.16 Score=49.84 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=39.8
Q ss_pred cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k 151 (287)
-|.|.+||||..+.+ .-+.++++ |++++++ =.|.|..-.. .+|+ -+.++...+.+.+.++||+.|.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 477999999987654 22334443 8887554 6788866431 3564 4556778889999999999884
No 69
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=93.46 E-value=0.55 Score=47.78 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--EecceeecC---C-------------CC
Q 023084 72 ASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLHAITL---P-------------YD 127 (287)
Q Consensus 72 ~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~hA~t~---~-------------~d 127 (287)
.|..+..+++|+ ..|| +.+||||+.+.+ .-+.++.+ |++|++. |+|.=-++. . .+
T Consensus 17 ~p~~~~~v~mYv-CGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~ 95 (490)
T PRK14536 17 QPIEHGHVRLYG-CGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKS 95 (490)
T ss_pred ccCCCCceEEEe-eCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCC
Confidence 344445677776 5677 889999988755 22344433 8888766 677611111 1 13
Q ss_pred H-HHHHHHHHHHHHHHHHcCCCCC
Q 023084 128 T-QQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 128 ~-~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
+ +-.+++...+.+++.++|+.+.
T Consensus 96 ~~e~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 96 VLEIAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC
Confidence 3 3344456678888889998754
No 70
>PLN02610 probable methionyl-tRNA synthetase
Probab=92.86 E-value=0.54 Score=50.51 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEe-cceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084 87 PTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIV-DLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 87 PTG~lHLGh~vg-~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k 151 (287)
|+|.+||||..+ .+ .-+.++++ |++++++.+ |-|..-.. .+|+ -+.++...+.+.|.++||+.|.
T Consensus 28 ~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D~ 106 (801)
T PLN02610 28 VNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDK 106 (801)
T ss_pred CCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 559999999885 34 33556665 889877755 44654321 2453 3555667788889999999884
No 71
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=92.77 E-value=0.32 Score=49.52 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=46.0
Q ss_pred eEEEeecCC--CcchhhhHHHH-H--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 023084 80 RIVSGVQPT--GSIHLGNYLGA-I--KNWIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (287)
Q Consensus 80 ~iytGi~PT--G~lHLGh~vg~-i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~-~~i~~~~~~~i~~~l 143 (287)
.+.+.-=|+ |.+||||..+. + .-+.++++ |++|++.. .|.|..-. ..++ +-.++++..+.+++.
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 444555566 99999998865 3 22333433 88887764 45553321 0244 334667888899999
Q ss_pred HcCCCCCc
Q 023084 144 ACGIDNSK 151 (287)
Q Consensus 144 A~GiDp~k 151 (287)
++|++++.
T Consensus 85 ~l~i~~d~ 92 (556)
T PRK12268 85 KLGISYDL 92 (556)
T ss_pred HcCCcCCC
Confidence 99999874
No 72
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=92.53 E-value=0.29 Score=46.41 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=46.1
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEecceeecCC-------CCHHH-HHHHHHHHHHHHHHcCCCCCceE
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITLP-------YDTQQ-LSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i-lIaD~hA~t~~-------~d~~~-i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
|+|.+||||..+.+ .-+.++++ |++|.+ .-.|.|..-.. .++.+ .+++..++.+++.++|+.++- .
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~-~ 89 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDW-R 89 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceec-c
Confidence 57999999988755 22333433 888755 45555532110 13333 445667788889999997762 2
Q ss_pred EEEccchhhhhHHH
Q 023084 154 VFVQSHVRAHVELM 167 (287)
Q Consensus 154 i~~qS~~~~~~el~ 167 (287)
.+.....+++.+..
T Consensus 90 ~~~~t~~~~~~~~v 103 (314)
T cd00812 90 REFTTCDPEYYKFT 103 (314)
T ss_pred cccccCCHHHHHHH
Confidence 23333344444433
No 73
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=92.52 E-value=0.56 Score=50.29 Aligned_cols=72 Identities=13% Similarity=0.164 Sum_probs=47.9
Q ss_pred CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC------C-CCH-HHHHHHHHHHHHHH
Q 023084 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YDT-QQLSKATRETAAIY 142 (287)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~------~-~d~-~~i~~~~~~~i~~~ 142 (287)
++.+.+|+ |+ |.+|+||..+.+ .-+.++|. |++|.+..+ |.|.+-. . .++ +-..++..++.+++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 57788886 77 999999988754 22455555 888877655 4444321 0 133 34556778888999
Q ss_pred HHcCCCCC
Q 023084 143 LACGIDNS 150 (287)
Q Consensus 143 lA~GiDp~ 150 (287)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998443
No 74
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=91.72 E-value=0.33 Score=49.15 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=40.8
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCc
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~k 151 (287)
|+|.+||||..+.+ .-+.++++ |++|.+.. .|.|..-. ..++.+ .+++...+.+++.++|+++|.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 78999999988654 22344444 88886654 44442211 024443 344567888899999998763
No 75
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.56 E-value=0.58 Score=44.91 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eecceee
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAI 122 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~ 122 (287)
|+|.+||||+.+.+ .-+.++++ |++|.+. =.|.|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 46999999998754 22344444 8888654 4555544
No 76
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=90.98 E-value=0.94 Score=45.35 Aligned_cols=71 Identities=14% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
|+|.+||||..+.+ .-+.+.++ |+++.+. =.|.|..-. ..++ +..+.+..++.+++.++||+++.
T Consensus 12 ~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~-- 89 (511)
T PRK11893 12 PNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD-- 89 (511)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC--
Confidence 45999999987654 22344444 8888665 445543211 0133 33455667888899999998874
Q ss_pred EEEccc
Q 023084 154 VFVQSH 159 (287)
Q Consensus 154 i~~qS~ 159 (287)
++..++
T Consensus 90 ~~~t~~ 95 (511)
T PRK11893 90 FIRTTD 95 (511)
T ss_pred ceeCCC
Confidence 344444
No 77
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=90.54 E-value=0.52 Score=44.72 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=41.0
Q ss_pred CCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCc
Q 023084 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 87 PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~k 151 (287)
|+|.+||||..+.+.. +.++++ |++|.+. =.|.|..-. ..++.+ .+++...+.+++.++|+++|.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999875522 333443 8888655 445553321 024443 444567788899999998874
No 78
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=90.40 E-value=0.72 Score=48.06 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=42.3
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecCC-------CCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITLP-------YDTQ-QLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~~-------~d~~-~i~~~~~~~i~~~lA~GiDp~k 151 (287)
|+|.+||||+.+.+ .-+.++++ |++++++ =.|.|..-.. .++. -++++...+.+++.++||++|.
T Consensus 15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~ 92 (648)
T PRK12267 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDK 92 (648)
T ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55999999987655 22444444 8887654 5566644210 2443 3455667888899999998873
No 79
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.23 E-value=0.92 Score=44.30 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=37.9
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEE-ecceeec---------C-C------CCHHH--------HHHHHHH
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHAIT---------L-P------YDTQQ--------LSKATRE 137 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA~t---------~-~------~d~~~--------i~~~~~~ 137 (287)
|+|.+||||+.+.+ .-+.++++ |++|++.. .|.|.+- . . .++++ .+++...
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKEESGGK 91 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 56999999988755 22445555 88886654 4555321 1 0 12222 2344556
Q ss_pred HHHHHHHcCCCCC
Q 023084 138 TAAIYLACGIDNS 150 (287)
Q Consensus 138 ~i~~~lA~GiDp~ 150 (287)
+.+++.++|+..|
T Consensus 92 ~~~~~~~lgi~~D 104 (382)
T cd00817 92 IREQLKRLGASVD 104 (382)
T ss_pred HHHHHHHhCceee
Confidence 6778888997433
No 80
>PLN02946 cysteine-tRNA ligase
Probab=88.42 E-value=2.8 Score=43.36 Aligned_cols=77 Identities=12% Similarity=-0.057 Sum_probs=46.8
Q ss_pred CCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE-Eeccee--ecC-----CCCHH-HHHHHHH
Q 023084 72 ASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHA--ITL-----PYDTQ-QLSKATR 136 (287)
Q Consensus 72 ~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA--~t~-----~~d~~-~i~~~~~ 136 (287)
.|..+..+.+|+ ..|| +.+||||+.+.+ .-+.++.+ |++|.+. -.|.|. ++. ..++. ..++++.
T Consensus 74 ~P~~~~~v~~Y~-CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~ 152 (557)
T PLN02946 74 KPKVEGKVGMYV-CGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCE 152 (557)
T ss_pred ccCCCCceeEEE-eCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHH
Confidence 344455677775 4788 889999988755 22344434 8888654 223321 111 02443 3455677
Q ss_pred HHHHHHHHcCCCC
Q 023084 137 ETAAIYLACGIDN 149 (287)
Q Consensus 137 ~~i~~~lA~GiDp 149 (287)
++.+++.++|+.+
T Consensus 153 ~f~~d~~~LnI~~ 165 (557)
T PLN02946 153 EFLSDMAYLHCLP 165 (557)
T ss_pred HHHHHHHHCCCCC
Confidence 8888999999853
No 81
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=88.19 E-value=1.3 Score=47.82 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=44.8
Q ss_pred ceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC------C-CCH-HHHHHHHHHHHHHHHH
Q 023084 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL------P-YDT-QQLSKATRETAAIYLA 144 (287)
Q Consensus 79 ~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~------~-~d~-~~i~~~~~~~i~~~lA 144 (287)
..+.+|+ -|||.+|+||..+.+ .-+.++++ |++|.+..+ |.|.+-. . .++ +...+++.++.+++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4565553 234999999988754 22455555 899877765 4444311 1 133 4456677888899999
Q ss_pred cCCCC
Q 023084 145 CGIDN 149 (287)
Q Consensus 145 ~GiDp 149 (287)
+|+..
T Consensus 111 lG~~~ 115 (842)
T TIGR00396 111 LGFSY 115 (842)
T ss_pred hCCcc
Confidence 99643
No 82
>PLN02563 aminoacyl-tRNA ligase
Probab=87.78 E-value=3.8 Score=45.06 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=47.5
Q ss_pred CceEEEee-cCCCc-chhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-C------CCH-HHHHHHHHHHHHHH
Q 023084 78 KKRIVSGV-QPTGS-IHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-P------YDT-QQLSKATRETAAIY 142 (287)
Q Consensus 78 ~~~iytGi-~PTG~-lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-~------~d~-~~i~~~~~~~i~~~ 142 (287)
++++.+++ -|+|. +|+||..+.+ .-+.++++ |++|++.++ |-|.+-. . ..+ +...+++..+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35677776 34597 9999988644 22455555 889877765 4454421 0 122 34556778888899
Q ss_pred HHcCC--CCCc
Q 023084 143 LACGI--DNSK 151 (287)
Q Consensus 143 lA~Gi--Dp~k 151 (287)
..+|+ |+++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99994 6665
No 83
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=87.02 E-value=3.9 Score=41.16 Aligned_cols=72 Identities=11% Similarity=-0.041 Sum_probs=44.2
Q ss_pred eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee-c-C-----CCCHHH-HHHHHHHHHHHHHHcC
Q 023084 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAIYLACG 146 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~-t-~-----~~d~~~-i~~~~~~~i~~~lA~G 146 (287)
...+|-=|-|.+||||..+.+ .-+.++++ |++|.+..+ |.|.- + . ..++.+ .+.+...+.+++.++|
T Consensus 24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~Lg 103 (465)
T TIGR00435 24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALN 103 (465)
T ss_pred EEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 344566666999999988755 22344433 889866544 55421 0 0 013433 3446677888899999
Q ss_pred CCCCc
Q 023084 147 IDNSK 151 (287)
Q Consensus 147 iDp~k 151 (287)
+.++.
T Consensus 104 I~~d~ 108 (465)
T TIGR00435 104 VLPPD 108 (465)
T ss_pred CCCCc
Confidence 97553
No 84
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.42 E-value=1.6 Score=47.03 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=48.4
Q ss_pred CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeecCC---------CCHH-HHHHHHHHHHHH
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDTQ-QLSKATRETAAI 141 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA~t~~---------~d~~-~i~~~~~~~i~~ 141 (287)
++++|..=| -|||.||+||..+.. .-+.++++ |++|++-++ |||+=.| .+|. -...++.++.++
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 355555555 589999999966421 22333444 888877665 7777434 2553 355678888889
Q ss_pred HHHcCC--CCCc
Q 023084 142 YLACGI--DNSK 151 (287)
Q Consensus 142 ~lA~Gi--Dp~k 151 (287)
+.++|+ |+++
T Consensus 113 lk~lG~siDW~R 124 (814)
T COG0495 113 LKSLGFSIDWRR 124 (814)
T ss_pred HHHhCCcccccc
Confidence 999886 5655
No 85
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=84.60 E-value=5.6 Score=42.25 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecce-eecC-----CCCHHH-HHHH
Q 023084 70 PVASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDLH-AITL-----PYDTQQ-LSKA 134 (287)
Q Consensus 70 ~~~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~h-A~t~-----~~d~~~-i~~~ 134 (287)
+-.|..+..+++|+ ..|| +.+||||+.+.+ .-+.++.+ |++|.+. +.|.- +++. ..++.+ .+++
T Consensus 240 ~f~P~~~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y 318 (699)
T PRK14535 240 PFAPIDPENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARF 318 (699)
T ss_pred ccccCCCCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHH
Confidence 33344455677775 6777 789999988755 22344433 8888665 33321 1111 024433 4456
Q ss_pred HHHHHHHHHHcCCCCCc
Q 023084 135 TRETAAIYLACGIDNSK 151 (287)
Q Consensus 135 ~~~~i~~~lA~GiDp~k 151 (287)
+.++.+++.++||.+..
T Consensus 319 ~~~F~~d~~~LnI~~p~ 335 (699)
T PRK14535 319 IQAMHEDADALGVLRPD 335 (699)
T ss_pred HHHHHHHHHHcCCCCCc
Confidence 67788888899987643
No 86
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=83.75 E-value=3.9 Score=39.23 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=39.4
Q ss_pred CCCCceEEEeecCC--CcchhhhHHHHH--HHHHH-Hhc-cCcEEEE--EecceeecCC------CCHHH-HHHHHHHHH
Q 023084 75 SSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQN-SYETLFF--IVDLHAITLP------YDTQQ-LSKATRETA 139 (287)
Q Consensus 75 ~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~-LQ~-g~~~~il--IaD~hA~t~~------~d~~~-i~~~~~~~i 139 (287)
.+..+++|+ ..|| ...||||+...+ .-+.+ |+. |+++.+. |+|.---+-. .++.+ .+++++++.
T Consensus 5 ~~~~v~~Y~-CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~ 83 (300)
T PF01406_consen 5 NPGKVRMYV-CGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFF 83 (300)
T ss_dssp CTTEEEEEE-EEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred CCCeEEEEc-CCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 345566665 4566 789999998765 11222 344 8887554 7777322211 13333 445677788
Q ss_pred HHHHHcCCCCC
Q 023084 140 AIYLACGIDNS 150 (287)
Q Consensus 140 ~~~lA~GiDp~ 150 (287)
+++.++|+.+-
T Consensus 84 ~dm~~Lnv~~p 94 (300)
T PF01406_consen 84 EDMKALNVLPP 94 (300)
T ss_dssp HHHHHTT----
T ss_pred HHHHHcCCCCC
Confidence 88889998653
No 87
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.38 E-value=2.2 Score=44.52 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=56.4
Q ss_pred eEEEeec--CCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 80 ~iytGi~--PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
.|+|-|= |-|.+||||.-....++=....-..+-++-=|+ |||. .+-.++-..+.++..++|++|-| |=+.
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD---TNPE--kEee~yf~sI~e~V~WLG~~P~k--vTys 320 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD---TNPE--KEEEEYFESIKEMVAWLGFEPYK--VTYS 320 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC---CCcc--hhhHHHHHHHHHHHHHhCCCcee--eecc
Confidence 5777774 559999999743223332112212355565666 3432 12333444455555678999976 4567
Q ss_pred cchh-hhhHHHHH-------HhccCCHHHHhchhcHH
Q 023084 158 SHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 186 (287)
Q Consensus 158 S~~~-~~~el~w~-------L~~~~t~~~L~R~~~~k 186 (287)
||+. +..+++.. +.|+.+..++++...++
T Consensus 321 SDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 321 SDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred hhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 8863 34444333 55888888887444433
No 88
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=82.86 E-value=12 Score=37.32 Aligned_cols=73 Identities=10% Similarity=-0.028 Sum_probs=42.9
Q ss_pred CCCceEEE-eecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-ccee--ecC-----CCCHHH-HHHHHHHHHHH
Q 023084 76 SVKKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQ-LSKATRETAAI 141 (287)
Q Consensus 76 ~~~~~iyt-Gi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA--~t~-----~~d~~~-i~~~~~~~i~~ 141 (287)
+..+++|+ |-=|=+.+||||+.+.+ .-++++++ |++|.+..+ |.|. ++. ..++++ .+++..+..++
T Consensus 34 ~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d 113 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFRED 113 (411)
T ss_pred CCcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34555554 43333899999988765 33455554 888876633 2221 111 024433 44566778888
Q ss_pred HHHcCCC
Q 023084 142 YLACGID 148 (287)
Q Consensus 142 ~lA~GiD 148 (287)
+.++|+.
T Consensus 114 ~~~Lni~ 120 (411)
T TIGR03447 114 MEALRVL 120 (411)
T ss_pred HHHcCCC
Confidence 8889864
No 89
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=82.60 E-value=1.7 Score=47.79 Aligned_cols=44 Identities=32% Similarity=0.314 Sum_probs=28.2
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.+.+|. -|||.+|+||.+... .-+.+++. |+++.+..+=+|+
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~ 109 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHA 109 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCC
Confidence 34555544 357999999988644 22455655 8998776554444
No 90
>PLN02843 isoleucyl-tRNA synthetase
Probab=81.40 E-value=2.4 Score=46.52 Aligned_cols=74 Identities=16% Similarity=0.240 Sum_probs=42.5
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC--------------CCCHHHHHHHHH-
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL--------------PYDTQQLSKATR- 136 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~--------------~~d~~~i~~~~~- 136 (287)
++.+.+|. -++|.+||||.+..+.+ +++++. |+++.+..+ |-|.+-. ..++++.++.++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 44554453 35799999999875422 444554 888866544 4442211 124444443332
Q ss_pred -------HHHHHHHHcCC--CCCc
Q 023084 137 -------ETAAIYLACGI--DNSK 151 (287)
Q Consensus 137 -------~~i~~~lA~Gi--Dp~k 151 (287)
.+.+++..+|+ |+++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 23567788898 8876
No 91
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=81.17 E-value=2.8 Score=44.83 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=43.1
Q ss_pred CceEEE-eecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee-e---------cC--CCC--H--------HH
Q 023084 78 KKRIVS-GVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA-I---------TL--PYD--T--------QQ 130 (287)
Q Consensus 78 ~~~iyt-Gi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA-~---------t~--~~d--~--------~~ 130 (287)
++.+.+ .--|+|.+||||..+.+ .-+.++++ |+++.+..+-+|. + .+ +.+ . +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 345555 33567999999988754 22445554 8888776654433 2 11 111 1 12
Q ss_pred HHHHHHHHHHHHHHcCC--CCCc
Q 023084 131 LSKATRETAAIYLACGI--DNSK 151 (287)
Q Consensus 131 i~~~~~~~i~~~lA~Gi--Dp~k 151 (287)
..++...+.+++.++|+ |.++
T Consensus 119 ~~~~~~~~~~~~~~lg~s~Dw~~ 141 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVDWSL 141 (800)
T ss_pred HHHHHHHHHHHHHHhCeeeccCC
Confidence 33455667788888997 5544
No 92
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=79.53 E-value=2.8 Score=45.29 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=28.9
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.+++|. -+||.+|+||.+... .-+.++++ |+++.+..+-+|+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 82 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHA 82 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcC
Confidence 45555544 357999999988644 22455555 8888777665554
No 93
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.46 E-value=1.9 Score=44.82 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=29.9
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecceee
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHAI 122 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~hA~ 122 (287)
|+.=-|||+|||||+..++ ..+.++-+ |++| ...|.||=..
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHH
Confidence 8888999999999998765 33444433 8886 5578888443
No 94
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.32 E-value=1.4 Score=47.83 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=28.5
Q ss_pred CCCcchhhhHHH--HHHHHHHHhc--cCcEEEEEecceeec
Q 023084 87 PTGSIHLGNYLG--AIKNWIALQN--SYETLFFIVDLHAIT 123 (287)
Q Consensus 87 PTG~lHLGh~vg--~i~~~~~LQ~--g~~~~ilIaD~hA~t 123 (287)
+||.+|+||.+. .+.-++++++ |++++++-+=+||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 489999999874 2344566666 899999988888765
No 95
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=78.29 E-value=2.5 Score=41.28 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=30.6
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+.+|+..+|.||...+-.. .++.... ..| ..| ..+.+.+ +.++ +| +|||||
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~hg~---v~~~-~g-~KMSKS 347 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLHGL---VRDE-DG-RKMSKS 347 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEeeee---EECC-CC-CCcccc
Confidence 4579999999998665444 3333322 112 123 3344554 6555 67 599998
No 96
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=77.62 E-value=2.7 Score=40.70 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=25.6
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccee
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~hA 121 (287)
|+.--|||++|+||+..++ ..+..+-+ |++| ...|.||=.
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 7888899999999998755 33444433 7776 567899843
No 97
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=77.14 E-value=22 Score=35.13 Aligned_cols=72 Identities=10% Similarity=-0.032 Sum_probs=42.5
Q ss_pred CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEEE-eccee--ecC-----CCCHHH-HHHHHHHHHHHH
Q 023084 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFFI-VDLHA--ITL-----PYDTQQ-LSKATRETAAIY 142 (287)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~ilI-aD~hA--~t~-----~~d~~~-i~~~~~~~i~~~ 142 (287)
.+++|+ ..|| +.+||||+.+.+ .-+.++++ |++|.+.. .|.|. ++. ..++++ .+++...+.+++
T Consensus 9 ~v~~Yv-CGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~ 87 (384)
T PRK12418 9 TATMYV-CGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDM 87 (384)
T ss_pred eeEEEe-cCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 455553 4566 889999988755 22444444 88886653 23321 111 024433 444667788888
Q ss_pred HHcCC-CCC
Q 023084 143 LACGI-DNS 150 (287)
Q Consensus 143 lA~Gi-Dp~ 150 (287)
.++|+ .|+
T Consensus 88 ~~Lni~~~~ 96 (384)
T PRK12418 88 EALRVLPPR 96 (384)
T ss_pred HHhCCCCCC
Confidence 89996 453
No 98
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=76.77 E-value=2.6 Score=39.94 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=12.5
Q ss_pred CCCEEEeeccchHHH
Q 023084 216 QSDFVPVGEDQKQHL 230 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi 230 (287)
..|+..+|.||.+++
T Consensus 224 p~di~v~G~D~i~~h 238 (314)
T cd00812 224 PVDIYIGGKEHAPNH 238 (314)
T ss_pred CCeeeecchhHHHHH
Confidence 478999999997755
No 99
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=76.44 E-value=3.9 Score=39.26 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.5
Q ss_pred cCCCEEEeeccchH
Q 023084 215 YQSDFVPVGEDQKQ 228 (287)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (287)
+.+|+.+.|.||..
T Consensus 251 ~p~d~~~~GkDii~ 264 (338)
T cd00818 251 FPADFILEGSDQTR 264 (338)
T ss_pred CCCeEEeecchHHh
Confidence 35789999999975
No 100
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=76.23 E-value=8.6 Score=39.17 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=44.8
Q ss_pred CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc-----------eeecCC-----CCH-HHHH
Q 023084 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL-----------HAITLP-----YDT-QQLS 132 (287)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~-----------hA~t~~-----~d~-~~i~ 132 (287)
.+++|+ ..|| ..+||||+.+.+ .-++++.+ |++|.+. |+|. -+++.. .++ +-.+
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 556665 6777 679999988755 22344433 8888764 6666 112210 134 3344
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 023084 133 KATRETAAIYLACGIDNS 150 (287)
Q Consensus 133 ~~~~~~i~~~lA~GiDp~ 150 (287)
+++..+.+++.++|+.++
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 566778888889998765
No 101
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=76.05 E-value=3.5 Score=44.68 Aligned_cols=44 Identities=32% Similarity=0.387 Sum_probs=27.1
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.+.+|. -+||.+|+||++... .-+.++++ |+++.+.-+-+|+
T Consensus 37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 85 (874)
T PRK05729 37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHA 85 (874)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcc
Confidence 34444432 357999999988644 22445555 8888776655544
No 102
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=75.91 E-value=3.2 Score=43.03 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=29.9
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||...+ +.+-+..... .++... | +..+.+.+ +... +| +|||||
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~~p-----------f--k~v~~hG~---vld~-~G-~KMSKS 565 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGKEP-----------F--KKVITHGF---VLDE-DG-RKMSKS 565 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSSTS-----------B--SEEEEE-----EEET-TS-SB-BTT
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccCCc-----------h--heeeeccc---cccc-ce-eecccC
Confidence 5689999999998765 2233322221 123211 3 44566665 6665 67 699998
No 103
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=75.76 E-value=2.9 Score=45.60 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=30.0
Q ss_pred hcCCCEEEeeccch---HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCce-ecCCCCcccccCCCCCCCCCCC
Q 023084 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 214 ~~~adlvpvG~DQ~---~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~-l~~~~~~~l~gL~dg~~KMSKS 287 (287)
.+-+|+...|.||. .|-.+-..++- .|. ..|.. +.+.+ +.+. +| +|||||
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g~--------------~P~k~vl~HG~---vld~-~G-~KMSKS 596 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-----RGK--------------APYKQVLTHGF---TVDG-KG-RKMSKS 596 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-----cCC--------------CccceeEEeee---EECC-CC-CCCCCC
Confidence 35689999999997 34444444432 231 12333 34455 5554 67 699998
No 104
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=74.87 E-value=3 Score=42.98 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=28.8
Q ss_pred eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 023084 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~ 119 (287)
.-|++--|+|++|+||..+++ .-+.++.+ |++| ...|.||
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 447888899999999998765 33444444 7776 4668885
No 105
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=73.72 E-value=4 Score=44.65 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=24.7
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV 117 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa 117 (287)
++.+.+|. -+||.+|+||.++.. .-+.++|+ |+++.+..+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G 70 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCc
Confidence 34444443 246999999988644 22455666 888766543
No 106
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=73.24 E-value=14 Score=38.91 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCCCCCCCceEEEeecCC--CcchhhhHHHHH--HHHHH-Hhc--cCcEEEE--EecceeecC------CCC-HH-HHH
Q 023084 70 PVASSSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQN--SYETLFF--IVDLHAITL------PYD-TQ-QLS 132 (287)
Q Consensus 70 ~~~~~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~-LQ~--g~~~~il--IaD~hA~t~------~~d-~~-~i~ 132 (287)
+=.|..+..+++|+ ..|| +.+||||+...+ .-+.+ |++ |++|.+. |.|.=--|- ..+ +. ..+
T Consensus 52 ~f~p~~~~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~ 130 (651)
T PTZ00399 52 EFVPQNGRQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELAR 130 (651)
T ss_pred ccccCCCCeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHH
Confidence 33344455666665 5677 789999987654 22222 452 8888765 333311110 013 43 344
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 023084 133 KATRETAAIYLACGIDNS 150 (287)
Q Consensus 133 ~~~~~~i~~~lA~GiDp~ 150 (287)
.+..++.+++.++||.+.
T Consensus 131 ~~~~~f~~d~~~Lni~~p 148 (651)
T PTZ00399 131 KWEKEFFEDMKALNVRPP 148 (651)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 566778888889998653
No 107
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=72.69 E-value=3.2 Score=42.76 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=29.3
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccee
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~hA 121 (287)
|+.=-|||++|+||...++ ..+.++-+ |++| ...|.||=.
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 7888899999999998755 33444433 8886 567888844
No 108
>PLN02660 pantoate--beta-alanine ligase
Probab=72.40 E-value=12 Score=35.67 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=25.3
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++|....|.--.|-+.+-|.+.+.+|
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~ 171 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLD 171 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999987
No 109
>PLN02286 arginine-tRNA ligase
Probab=71.39 E-value=2.9 Score=43.27 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=28.5
Q ss_pred EEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecc
Q 023084 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDL 119 (287)
Q Consensus 81 iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~ 119 (287)
=|+.--|||++|+||..+++ ..+..+-+ |++| ...|.||
T Consensus 122 EfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 122 DFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred EecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 38888999999999988655 33444433 8886 5568887
No 110
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=71.22 E-value=2.6 Score=42.22 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=13.5
Q ss_pred cCCCEEEeeccchHHHH
Q 023084 215 YQSDFVPVGEDQKQHLE 231 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~ 231 (287)
+..|+...|.||...+.
T Consensus 253 ~~~D~~~~G~D~~~~h~ 269 (511)
T PRK11893 253 WPADVHLIGKDILRFHA 269 (511)
T ss_pred CCCcceEecccccccch
Confidence 35789999999998543
No 111
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=71.00 E-value=18 Score=31.88 Aligned_cols=72 Identities=13% Similarity=0.180 Sum_probs=38.3
Q ss_pred chhhhHHHHHHHHHHHhccCcEEEEEeccee-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhhhhHHH
Q 023084 91 IHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM 167 (287)
Q Consensus 91 lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA-~t--~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~~~el~ 167 (287)
+|+||.-. ++.. ++.--+++|.|+.... .. ++.+.++..+.++... ...|+|.+++.|.-=.|+. +.+..
T Consensus 11 ~H~GHl~~-i~~a--~~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~---~~~~~~~~rv~i~pi~D~~-~~~~~ 83 (181)
T cd02168 11 FHNGHLAV-VLIA--LEKAKKVIILIGSARTARNIKNPWTSEEREVMIEAAL---SDAGADLARVHFRPLRDHL-YSDNL 83 (181)
T ss_pred CCHHHHHH-HHHH--HHHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHH---hccCCCcceEEEEecCCCC-CChHH
Confidence 89999754 3343 2232267777765521 11 2334444444444332 3468898887776544431 23445
Q ss_pred HH
Q 023084 168 WL 169 (287)
Q Consensus 168 w~ 169 (287)
|.
T Consensus 84 W~ 85 (181)
T cd02168 84 WL 85 (181)
T ss_pred HH
Confidence 65
No 112
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=68.92 E-value=23 Score=29.35 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=45.3
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccc
Q 023084 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (287)
Q Consensus 88 TG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~ 159 (287)
||++..-|.+-+ |.+|.+-++++++-..==. ..-....+++.....+.+...||+|+++.+++-|-
T Consensus 37 ~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 37 SGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred CCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 488887664332 5678898888776521110 01225677777788888889999999999988764
No 113
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=68.63 E-value=5.1 Score=40.38 Aligned_cols=28 Identities=29% Similarity=0.089 Sum_probs=19.1
Q ss_pred HHhhhhhhcCCCEEEeeccch-HHHHHHH
Q 023084 207 LMASDILLYQSDFVPVGEDQK-QHLELTR 234 (287)
Q Consensus 207 LQaADIl~~~adlvpvG~DQ~-~hi~LaR 234 (287)
-|+..+|-...|+..+|.|.. +|++--.
T Consensus 210 am~~~~lg~~~Dih~gG~Dl~fpHhene~ 238 (465)
T TIGR00435 210 AMNDKYLGDQIDIHGGGVDLIFPHHENEI 238 (465)
T ss_pred HHHHHhcCCCceeeccccccccchHHHHH
Confidence 455556666789999999995 4554433
No 114
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=68.49 E-value=5.2 Score=44.41 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=33.5
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||... =++|-++..+.. .| ..| ..+.+.+ |..- +| +|||||
T Consensus 490 ~P~d~~~~G~Dii~~-W~a~~l~~~~~~-~~---------------~~Pfk~V~~hG~---v~d~-~G-~KMSKS 542 (1052)
T PRK14900 490 YPTSVMETGHDIIFF-WVARMMMMGLHF-MG---------------EVPFRTVYLHPM---VRDE-KG-QKMSKT 542 (1052)
T ss_pred CCchhhcccccHHhH-HHHHHHHHHHHh-cC---------------CCccceeEeccc---EECC-CC-CCccCC
Confidence 457999999999854 566777666542 11 245 3455665 5543 57 699998
No 115
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=66.32 E-value=6.2 Score=43.02 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=13.9
Q ss_pred cCCCEEEeeccchH-HHHHH
Q 023084 215 YQSDFVPVGEDQKQ-HLELT 233 (287)
Q Consensus 215 ~~adlvpvG~DQ~~-hi~La 233 (287)
+-+|+...|.||.. |+-..
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~ 548 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFF 548 (897)
T ss_pred CCceEEEeeeccCccHHHHH
Confidence 45799999999966 44433
No 116
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=66.31 E-value=3.6 Score=45.62 Aligned_cols=44 Identities=34% Similarity=0.382 Sum_probs=29.5
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.|+.|. -+||.+|+||.++.. .-+.+++. |+++.+..+-+|+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~ 97 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHA 97 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCcc
Confidence 45666655 357999999988644 22455665 8998777665554
No 117
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.60 E-value=30 Score=35.18 Aligned_cols=72 Identities=14% Similarity=0.251 Sum_probs=46.8
Q ss_pred cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC------CC-CH-HHHHHHHHHHHHHHHHcCCCCCce
Q 023084 86 QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL------PY-DT-QQLSKATRETAAIYLACGIDNSKA 152 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~------~~-d~-~~i~~~~~~~i~~~lA~GiDp~kt 152 (287)
-+-..+||||+...+ ..+.++|. |-.++|. =.|-|.+-. ++ +| +...++..+....+.+.||.-++
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~- 127 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTK- 127 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhh-
Confidence 356779999987765 44667787 4334333 457776632 11 44 55667778888889999997654
Q ss_pred EEEEccc
Q 023084 153 SVFVQSH 159 (287)
Q Consensus 153 ~i~~qS~ 159 (287)
|++-.+
T Consensus 128 -FIRTTd 133 (578)
T KOG0436|consen 128 -FIRTTD 133 (578)
T ss_pred -eeecCC
Confidence 454443
No 118
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=65.50 E-value=6.3 Score=42.59 Aligned_cols=51 Identities=27% Similarity=0.361 Sum_probs=32.0
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||...+ ++|-++--.. ..| +.| ..+.+.+ +... +| +|||||
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~hG~---v~d~-~G-~KMSKS 529 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIHGL---VRDE-QG-RKMSKS 529 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEeeE---EECC-CC-CCCCcC
Confidence 5689999999998775 4455553322 111 234 4455555 5554 67 599998
No 119
>PLN02943 aminoacyl-tRNA ligase
Probab=65.43 E-value=7.7 Score=42.62 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=31.8
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||.. +=++|-++.... ..| +.| ..+++.+ +... +| +|||||
T Consensus 535 yP~dl~~~G~Dii~-fW~a~m~~~~~~-~~~---------------~~Pf~~v~~hg~---v~~~-~G-~KMSKS 587 (958)
T PLN02943 535 YPTTVLETGHDILF-FWVARMVMMGIE-FTG---------------TVPFSYVYLHGL---IRDS-QG-RKMSKT 587 (958)
T ss_pred CCCeEEEEeehHHH-HHHHHHHHhhhh-hcC---------------CCChheEEEecc---EECC-CC-CcccCc
Confidence 45799999999984 556666664322 111 235 3455554 5444 67 699998
No 120
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=65.12 E-value=6 Score=42.89 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=33.5
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||... =++|-++..... .| +.| ..+.+.+ |-+. +| +|||||
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~hG~---v~d~-~G-~KMSKS 524 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIHGL---VRDE-QG-RKMSKS 524 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEeee---EECC-CC-CCcccC
Confidence 568999999999875 456666655431 11 245 4455655 6555 67 599998
No 121
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=64.55 E-value=6.6 Score=37.19 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.6
Q ss_pred CCCEEEeeccchHHHHH
Q 023084 216 QSDFVPVGEDQKQHLEL 232 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~L 232 (287)
..++...|.|+..++.+
T Consensus 235 ~~~v~~~G~D~~~fh~~ 251 (319)
T cd00814 235 PELVHFIGKDIIRFHAI 251 (319)
T ss_pred CceEEEEeechhhhhHH
Confidence 46899999999987644
No 122
>PLN02843 isoleucyl-tRNA synthetase
Probab=64.47 E-value=8.7 Score=42.32 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hhcCCCEEEeeccchH
Q 023084 213 LLYQSDFVPVGEDQKQ 228 (287)
Q Consensus 213 l~~~adlvpvG~DQ~~ 228 (287)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 3456999999999987
No 123
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=64.42 E-value=7 Score=42.82 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=14.2
Q ss_pred cCCCEEEeeccchH-HHHHH
Q 023084 215 YQSDFVPVGEDQKQ-HLELT 233 (287)
Q Consensus 215 ~~adlvpvG~DQ~~-hi~La 233 (287)
|-+|+...|.||.+ |+..-
T Consensus 572 yP~D~~~~GkDii~~H~~~~ 591 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY 591 (938)
T ss_pred CCceEEEEeeccccchHHHH
Confidence 45899999999976 44433
No 124
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=64.12 E-value=8.1 Score=38.19 Aligned_cols=69 Identities=17% Similarity=0.065 Sum_probs=39.7
Q ss_pred chhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCC
Q 023084 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (287)
Q Consensus 199 ~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~ 278 (287)
.|--+=..-|+..+|--.-||--+|.|-.+.+ ...++|...- .+|.. +-+..+++.. ....
T Consensus 197 PGWHiECsam~~~~lg~~~DIH~GG~DL~FPH-Heneiaq~~a-~~g~~-------------~~~~~w~H~g---~l~~- 257 (384)
T PRK12418 197 PGWHIECSAIALNRLGSGFDIQGGGSDLIFPH-HEFSAAHAEA-ATGER-------------RFARHYVHAG---MIGL- 257 (384)
T ss_pred ChhHHHHHHHHHHHcCCCcccccCccccccch-hHhHHHHHHH-hcCCC-------------CcceEEEECC---EECC-
Confidence 34344445677777777789999999976543 2344554432 23321 1233444433 3343
Q ss_pred CCCCCCCCC
Q 023084 279 DGLSKVLTI 287 (287)
Q Consensus 279 dg~~KMSKS 287 (287)
+| +|||||
T Consensus 258 ~G-~KMSKS 265 (384)
T PRK12418 258 DG-EKMSKS 265 (384)
T ss_pred CC-CcccCc
Confidence 77 599998
No 125
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=64.00 E-value=8.2 Score=40.02 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=25.8
Q ss_pred CCceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceee
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
+++.+..|. -+||.+|+||++....+ +.+++. |+++.+..+ |-|.+
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 345555554 35799999998875422 445555 888866544 55544
No 126
>PLN02381 valyl-tRNA synthetase
Probab=63.94 E-value=4.5 Score=44.94 Aligned_cols=44 Identities=30% Similarity=0.331 Sum_probs=29.1
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.|.+|. -+||.+|+||.+... .-+.++++ |+++.+..+-+|+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~ 177 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHA 177 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCC
Confidence 35666654 357999999988643 22455555 8898777665554
No 127
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=63.47 E-value=8 Score=42.59 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=33.8
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|-+|+...|.||.. +=++|-++..+.. .| ..| ..+++.+ |-+- +| +|||||
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~HG~---v~d~-~G-~KMSKS 589 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLHAM---VRDS-QG-EKMSKS 589 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhccce---EECC-CC-CCcccC
Confidence 56899999999987 4466666665531 11 356 3455655 6554 67 599998
No 128
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=63.10 E-value=8.7 Score=42.26 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=12.9
Q ss_pred hhcCCCEEEeeccchH
Q 023084 213 LLYQSDFVPVGEDQKQ 228 (287)
Q Consensus 213 l~~~adlvpvG~DQ~~ 228 (287)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 129
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=61.60 E-value=11 Score=40.50 Aligned_cols=51 Identities=25% Similarity=0.372 Sum_probs=29.2
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||...+ +.+-++.... .+|. .| ..+.+.+ +... +| +|||||
T Consensus 485 ~P~d~~~~G~Di~~~w-~~~~l~~~~~-~~~~---------------~Pf~~v~~hg~---v~~~-~G-~KMSKS 537 (800)
T PRK13208 485 FPMDLRPQGHDIIRTW-LFYTILRAYL-LTGK---------------LPWKNIMISGM---VLDP-DG-KKMSKS 537 (800)
T ss_pred CCceEEEeecchhhhH-HHHHHHHHHH-hcCC---------------CCcceEEEeeE---EECC-CC-CCCCCC
Confidence 3589999999998643 3333433322 1221 23 3344444 5544 67 599998
No 130
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=58.96 E-value=9.4 Score=41.25 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.8
Q ss_pred cCCCEEEeeccchH
Q 023084 215 YQSDFVPVGEDQKQ 228 (287)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (287)
+-+|+...|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 45899999999965
No 131
>PLN02943 aminoacyl-tRNA ligase
Probab=58.47 E-value=11 Score=41.32 Aligned_cols=44 Identities=23% Similarity=0.183 Sum_probs=28.7
Q ss_pred CceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEeccee
Q 023084 78 KKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHA 121 (287)
Q Consensus 78 ~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA 121 (287)
++.+..| =-+||.+|+||.+... .-+.+++. |+++.+..+=+|+
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 137 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHA 137 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcc
Confidence 3555555 4568999999988643 22444544 8998777665554
No 132
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.11 E-value=6.6 Score=41.72 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCCCceEEEee-cCCCcchhhhHHH-HH-HHHHHHhc--cCcEEEEEecceeecCCC---------CH-HHHHHHHHHH
Q 023084 74 SSSVKKRIVSGV-QPTGSIHLGNYLG-AI-KNWIALQN--SYETLFFIVDLHAITLPY---------DT-QQLSKATRET 138 (287)
Q Consensus 74 ~~~~~~~iytGi-~PTG~lHLGh~vg-~i-~~~~~LQ~--g~~~~ilIaD~hA~t~~~---------d~-~~i~~~~~~~ 138 (287)
....+.+|++=| -|||.+|+||... .| ..+.++|+ |++|+=-|+ |-|+=-|. +| .-..+|+..+
T Consensus 54 d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMG-WDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 54 DKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMG-WDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred ccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCc-ccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 334455888887 5999999999653 11 34556666 888765443 44442231 22 2355677777
Q ss_pred HHHHHHcCC--CCCc
Q 023084 139 AAIYLACGI--DNSK 151 (287)
Q Consensus 139 i~~~lA~Gi--Dp~k 151 (287)
.+++...|+ |+|+
T Consensus 133 k~Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDR 147 (876)
T ss_pred HHHHHHcCccccccc
Confidence 788888875 6655
No 133
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=58.08 E-value=28 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=25.3
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++|....|.--+|-+.+-|.+.+.+|
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~ 168 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF 168 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999987
No 134
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=57.25 E-value=8.7 Score=40.12 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.8
Q ss_pred CCCEEEeeccchHHHH
Q 023084 216 QSDFVPVGEDQKQHLE 231 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~ 231 (287)
.+|+.+.|.||..++.
T Consensus 254 p~~~~~~GkDii~fH~ 269 (648)
T PRK12267 254 PADVHLVGKDILRFHA 269 (648)
T ss_pred ccceEEEeeeecchhH
Confidence 4689999999987554
No 135
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=56.60 E-value=6.7 Score=42.82 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=42.8
Q ss_pred ceEEEee-cCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEecce-eecC-------------CCCHHHHHHH-----
Q 023084 79 KRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH-AITL-------------PYDTQQLSKA----- 134 (287)
Q Consensus 79 ~~iytGi-~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilIaD~h-A~t~-------------~~d~~~i~~~----- 134 (287)
+.+.+|. -++|.+|+||.+..+. -+.+++. |+++.+..+-+| .+-. ..++++.++.
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4444443 2469999999887542 2455665 888866655443 3311 0134433222
Q ss_pred ---HHHHHHHHHHcCC--CCCc
Q 023084 135 ---TRETAAIYLACGI--DNSK 151 (287)
Q Consensus 135 ---~~~~i~~~lA~Gi--Dp~k 151 (287)
...+.+++..+|+ |.++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 3455667888998 8776
No 136
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=56.60 E-value=56 Score=28.02 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=31.9
Q ss_pred ecCCCcchhhhHHHHHHHHHHHhccCc-EEEEEe-cceeec--CCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccch
Q 023084 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIV-DLHAIT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (287)
Q Consensus 85 i~PTG~lHLGh~vg~i~~~~~LQ~g~~-~~ilIa-D~hA~t--~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~ 160 (287)
|+| +|+||.-. ++...+. ++ ++|+++ +..... ++.+.++..+..+.. +...|+|-+++.++-..|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~---~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~~---~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE---VDELIIGIGSAQESHTLENPFTAGERVLMIRRA---LEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH---CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHHH---HHhcCCCcCeEEEEecCCC
Confidence 555 99999754 3344222 34 555563 333222 123333333333222 2333666677777655544
No 137
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=55.36 E-value=7.3 Score=42.07 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
.++.++.|. -|||.+|+||.+... .-+.+++. |+++.+..+ |-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 456777777 234999999988644 22455555 888866655 44433
No 138
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=55.33 E-value=47 Score=28.08 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=54.9
Q ss_pred eeccCCCCCCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEE----EecceeecCCCCHHHHHHHH
Q 023084 60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKAT 135 (287)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~il----IaD~hA~t~~~d~~~i~~~~ 135 (287)
|+-.+++.+.-.--+-+...||. =+.=||++..- + -+..|++|.|-++. ++|-|=..++. +..++.
T Consensus 11 csygaaDlag~~rmqyp~~vRiI-rv~CsGrvn~~----f--vl~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~ 80 (132)
T COG1908 11 CSYGAADLAGTSRMQYPPNVRII-RVMCSGRVNPE----F--VLKALRKGADGVLVAGCKIGECHYISGNY---KAKRRM 80 (132)
T ss_pred ccccchhhhccccccCCCceEEE-EeeccCccCHH----H--HHHHHHcCCCeEEEecccccceeeeccch---HHHHHH
Confidence 44444555554444444444443 23446776522 1 24457888886554 66777665543 355556
Q ss_pred HHHHHHHHHcCCCCCceEEEEccc
Q 023084 136 RETAAIYLACGIDNSKASVFVQSH 159 (287)
Q Consensus 136 ~~~i~~~lA~GiDp~kt~i~~qS~ 159 (287)
+-..+.+..+||+|+++.++|-|.
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEeh
Confidence 666667778999999999998875
No 139
>PLN02959 aminoacyl-tRNA ligase
Probab=53.45 E-value=17 Score=40.59 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=30.7
Q ss_pred CCcchhhhHHHHHHH--HHHHhc--cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCC
Q 023084 88 TGSIHLGNYLGAIKN--WIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID 148 (287)
Q Consensus 88 TG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiD 148 (287)
+|.+||||.+....+ ..++|. |+++.+.. .||.. +-| |...++.....+...|..
T Consensus 57 NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~-G~d~t---GlP--Ie~~aek~~~ei~~~g~~ 115 (1084)
T PLN02959 57 NGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF-AFHCT---GMP--IKASADKLAREIQQYGNP 115 (1084)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC-CcCCC---Ccc--HHHHHHHHHHHHHHcCCC
Confidence 599999999875422 455666 77776554 34322 222 333333334444456754
No 140
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=52.13 E-value=17 Score=40.09 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.5
Q ss_pred cCCCEEEeeccchHH
Q 023084 215 YQSDFVPVGEDQKQH 229 (287)
Q Consensus 215 ~~adlvpvG~DQ~~h 229 (287)
+-+|+...|.||...
T Consensus 544 ~Pad~~~~G~Di~r~ 558 (975)
T PRK06039 544 FPADFIVEGIDQTRG 558 (975)
T ss_pred CCceEEEechhhHhh
Confidence 468999999999754
No 141
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=52.11 E-value=14 Score=36.83 Aligned_cols=34 Identities=18% Similarity=-0.076 Sum_probs=21.9
Q ss_pred hHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHH
Q 023084 205 PVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (287)
Q Consensus 205 PvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r 239 (287)
..-|+..+|--.-|+.-+|.|-.+.+ +.-++|..
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpH-heneiaq~ 263 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPH-HEFSAAHA 263 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccc-hHhHHHHH
Confidence 45566666666789999999976543 22344444
No 142
>PLN02882 aminoacyl-tRNA ligase
Probab=51.50 E-value=19 Score=40.49 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=17.6
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHH
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAER 239 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r 239 (287)
+-+|+..-|.||.... +.+-++-.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s 589 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLS 589 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHH
Confidence 4499999999999876 44444444
No 143
>PLN02959 aminoacyl-tRNA ligase
Probab=49.23 E-value=23 Score=39.55 Aligned_cols=17 Identities=29% Similarity=0.290 Sum_probs=14.3
Q ss_pred cCCCEEEeeccchHHHH
Q 023084 215 YQSDFVPVGEDQKQHLE 231 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~ 231 (287)
|-+|+-..|.||..++-
T Consensus 670 yP~Dl~~sG~Dii~~wl 686 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL 686 (1084)
T ss_pred CCCeEEEecccHHHHHH
Confidence 56899999999988763
No 144
>PLN02381 valyl-tRNA synthetase
Probab=48.10 E-value=20 Score=40.04 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=33.4
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|-+|+..-|.||.. +=++|-+...+. ..| ..| ..+++.+ |-+- +| +|||||
T Consensus 607 ~P~d~~~~G~Dii~-~W~~rmi~~~~~-~~~---------------~~PFk~v~~hG~---V~D~-~G-~KMSKS 659 (1066)
T PLN02381 607 YPTSVLETGHDILF-FWVARMVMMGMQ-LGG---------------DVPFRKVYLHPM---IRDA-HG-RKMSKS 659 (1066)
T ss_pred CCCeeeeecchhhh-hHHHHHHHHHHH-hCC---------------CCchHHheecce---EECC-CC-CCCCCC
Confidence 56999999999984 446666665443 112 233 3455665 6664 67 599998
No 145
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.47 E-value=50 Score=33.62 Aligned_cols=33 Identities=27% Similarity=0.158 Sum_probs=25.4
Q ss_pred hHHHhhhhhhcCCCEEEeecc-chHHHHHHHHHHHH
Q 023084 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAER 239 (287)
Q Consensus 205 PvLQaADIl~~~adlvpvG~D-Q~~hi~LaRdla~r 239 (287)
...|+.++|--.-||--||.| +-||+|= |+|..
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 243 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQS 243 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHH
Confidence 467888888888999999999 5678874 45544
No 146
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=45.89 E-value=13 Score=40.88 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=28.1
Q ss_pred CceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
++.+..|. -++|.+|+||.+..+.+ +.+++. |+++.+..+ |-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35555554 25699999998875422 455555 888766544 54544
No 147
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=44.31 E-value=15 Score=39.82 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=19.5
Q ss_pred cCCCEEEeeccc-hHHHHHHHHHHHHH
Q 023084 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (287)
Q Consensus 215 ~~adlvpvG~DQ-~~hi~LaRdla~r~ 240 (287)
+-+|+..+|.|| .-|+-.+|-....+
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l 545 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFL 545 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHH
Confidence 459999999999 56666667765433
No 148
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.73 E-value=17 Score=36.90 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCCCCceEEEeecCC--CcchhhhHHHHH--HHHHH-Hhc-cCcEEEE--EecceeecCC-----C-CHHHH-HHHHHHH
Q 023084 74 SSSVKKRIVSGVQPT--GSIHLGNYLGAI--KNWIA-LQN-SYETLFF--IVDLHAITLP-----Y-DTQQL-SKATRET 138 (287)
Q Consensus 74 ~~~~~~~iytGi~PT--G~lHLGh~vg~i--~~~~~-LQ~-g~~~~il--IaD~hA~t~~-----~-d~~~i-~~~~~~~ 138 (287)
..+..+++|+ ..|| ...||||..+.+ .-+.+ |+. |+.|.+. |.|.---|.+ + ++.++ ...+.++
T Consensus 18 ~~~~~V~mYv-CGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f 96 (464)
T COG0215 18 IDPGKVKMYV-CGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAF 96 (464)
T ss_pred CCCCeEEEEe-cCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3334466665 5777 779999987644 22222 444 7755333 6665322221 2 34333 3356677
Q ss_pred HHHHHHcCCC
Q 023084 139 AAIYLACGID 148 (287)
Q Consensus 139 i~~~lA~GiD 148 (287)
.++..++|+-
T Consensus 97 ~~D~~aL~v~ 106 (464)
T COG0215 97 FEDMDALNVL 106 (464)
T ss_pred HHHHHHhCCC
Confidence 7888888884
No 149
>PLN02286 arginine-tRNA ligase
Probab=42.58 E-value=29 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHh
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
--|-.+|.||..|+.--..+++.++
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG 353 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAG 353 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcC
Confidence 3456699999999999999999987
No 150
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=41.90 E-value=17 Score=41.06 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=28.2
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
++.++.|- -+||.+|+||.+... .-+.+++. |+++.+..+ |-|.+
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 35556664 356999999988643 22344544 888876655 44443
No 151
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=41.29 E-value=25 Score=37.97 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=19.5
Q ss_pred cCCCEEEeeccc-hHHHHHHHHHHHHH
Q 023084 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (287)
Q Consensus 215 ~~adlvpvG~DQ-~~hi~LaRdla~r~ 240 (287)
|-+|+-..|.|| .-|+-.+|-....+
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l 548 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVL 548 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHH
Confidence 459999999999 57777777655433
No 152
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=40.95 E-value=16 Score=37.22 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=10.7
Q ss_pred CEEEeeccchHHHH
Q 023084 218 DFVPVGEDQKQHLE 231 (287)
Q Consensus 218 dlvpvG~DQ~~hi~ 231 (287)
++...|.|+...+.
T Consensus 289 ~~~~~G~D~~~Fh~ 302 (556)
T PRK12268 289 SYYFIGKDNIPFHS 302 (556)
T ss_pred EEEEEeeccCcchH
Confidence 48889999976543
No 153
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=40.90 E-value=25 Score=35.89 Aligned_cols=33 Identities=27% Similarity=0.126 Sum_probs=20.8
Q ss_pred hHHHhhhhhhcCCCEEEeeccch-HHHHHHHHHHHH
Q 023084 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 239 (287)
Q Consensus 205 PvLQaADIl~~~adlvpvG~DQ~-~hi~LaRdla~r 239 (287)
..-|+...|--..||.-||.|-. ||+|- ++|..
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs 255 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQC 255 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchhh--HHHHH
Confidence 34445555555679999999975 55544 44443
No 154
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.85 E-value=21 Score=38.99 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=26.8
Q ss_pred CCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecceeecC
Q 023084 88 TGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITL 124 (287)
Q Consensus 88 TG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~hA~t~ 124 (287)
||.+||||.++.- ..+.++++ |+++.+.-+-+||=+.
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIA 127 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIA 127 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchh
Confidence 7999999988632 22444544 7888888888888764
No 155
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=40.51 E-value=34 Score=32.37 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=19.7
Q ss_pred CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
++|..-.|..-.+.+.+-|++.+.++
T Consensus 141 ~Pd~~~FG~kd~gq~~~Lk~~~~dl~ 166 (277)
T cd00560 141 QPDRAYFGEKDAQQLAVIRRMVRDLN 166 (277)
T ss_pred CCCeEEECCCccccHHHHHHHHHHcC
Confidence 67877777777788888787777765
No 156
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=40.51 E-value=24 Score=36.36 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.6
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHh
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.-|-.+|.||..|+.--..+++.++
T Consensus 329 ~iI~V~g~~q~~h~~~v~~~l~~lG 353 (566)
T TIGR00456 329 KMIYVWGSDHHLHIAQFFAILEKLG 353 (566)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHcC
Confidence 3456699999999999999999987
No 157
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=40.00 E-value=17 Score=39.94 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=28.7
Q ss_pred CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
.++.++.|. -+||.+|+||.+... .-+.+++. |+++.+..+ |-|.+
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 346666665 356999999988643 12344554 888866554 44443
No 158
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=39.44 E-value=33 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.014 Sum_probs=26.8
Q ss_pred hHHHhhhhhhcCCCEEEeeccch-HHHHHHHHHHHHHh
Q 023084 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVN 241 (287)
Q Consensus 205 PvLQaADIl~~~adlvpvG~DQ~-~hi~LaRdla~r~n 241 (287)
...|+...|-..-||--||.|-. ||+|=-+-.++...
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~ 232 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT 232 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh
Confidence 35666677777899999999976 68876555555543
No 159
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=39.41 E-value=1.4e+02 Score=28.67 Aligned_cols=67 Identities=22% Similarity=0.378 Sum_probs=33.8
Q ss_pred ceEEEe-ecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecc---eeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL---HAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 154 (287)
Q Consensus 79 ~~iytG-i~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~---hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i 154 (287)
.-+|.| |+| +|+||... ++...+ ..-+++|.++.. |..-++-+.++..+.++. .++ +++..++.|
T Consensus 8 ~~~~~G~F~P---~H~GHl~~-i~~a~~--~~d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~----~~~-~~~~~r~~~ 76 (340)
T PRK05379 8 YLVFIGRFQP---FHNGHLAV-IREALS--RAKKVIVLIGSADLARSIKNPFSFEERAQMIRA----ALA-GIDLARVTI 76 (340)
T ss_pred EEEEeeccCC---CCHHHHHH-HHHHHH--HCCEEEEEEccCCCCCcCCCCCCHHHHHHHHHH----Hhh-cCCCceEEE
Confidence 345555 566 89999754 334322 222577777632 222223344433333333 233 676666655
Q ss_pred EE
Q 023084 155 FV 156 (287)
Q Consensus 155 ~~ 156 (287)
+-
T Consensus 77 ~p 78 (340)
T PRK05379 77 RP 78 (340)
T ss_pred EE
Confidence 54
No 160
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=37.85 E-value=34 Score=34.63 Aligned_cols=14 Identities=14% Similarity=0.226 Sum_probs=11.3
Q ss_pred EEEeeccchHHHHH
Q 023084 219 FVPVGEDQKQHLEL 232 (287)
Q Consensus 219 lvpvG~DQ~~hi~L 232 (287)
+.+.|.|....+.+
T Consensus 285 v~~~G~Di~~~h~~ 298 (530)
T TIGR00398 285 IHFIGKDIVRFHTI 298 (530)
T ss_pred EEEEecccchhHHH
Confidence 89999999986533
No 161
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=36.56 E-value=42 Score=38.07 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=37.9
Q ss_pred cchhhhchHHHhhhhh--hcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcc
Q 023084 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGAR 273 (287)
Q Consensus 198 ~~g~~~YPvLQaADIl--~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~ 273 (287)
+++.+-||--...+-+ .+-+|+..=|.||....- .+-++.... .+|. .| ..+.+.+
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgWf-~s~l~~s~~-l~~~---------------~PfK~VlvHG~--- 712 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGWF-YTLLVISTL-LFDK---------------APFKNLICNGL--- 712 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhccHH-HHHHHHHHH-hcCC---------------CCcceeEEccE---
Confidence 4556667742112322 256999999999987663 233333322 2332 23 3345554
Q ss_pred cccCCCCCCCCCCC
Q 023084 274 VMSLTDGLSKVLTI 287 (287)
Q Consensus 274 l~gL~dg~~KMSKS 287 (287)
+.+- +| +|||||
T Consensus 713 Vld~-dG-~KMSKS 724 (1205)
T PTZ00427 713 VLAS-DG-KKMSKR 724 (1205)
T ss_pred EEcC-CC-CCcccC
Confidence 4443 67 599998
No 162
>PLN02882 aminoacyl-tRNA ligase
Probab=36.10 E-value=24 Score=39.76 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=28.5
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
++.+|.|- -+||.+|+||.+... .-+.+++. |++|.+..+ |-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 45666664 356999999988643 22445555 888866544 55544
No 163
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=34.71 E-value=1.5e+02 Score=25.77 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=15.4
Q ss_pred ecCCCcchhhhHHHHHHHHHHHhccCc-EEEEEec
Q 023084 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVD 118 (287)
Q Consensus 85 i~PTG~lHLGh~vg~i~~~~~LQ~g~~-~~ilIaD 118 (287)
|+| +|+||.-. ++... +.++ ++|+|+.
T Consensus 9 F~P---~H~GHl~~-i~~a~---~~~d~v~v~i~s 36 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWIL---EEVDELIIGIGS 36 (174)
T ss_pred cCC---CCHHHHHH-HHHHH---HhCCEEEEEecC
Confidence 565 99999754 33332 2455 4555643
No 164
>PLN02224 methionine-tRNA ligase
Probab=34.42 E-value=44 Score=35.08 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=13.8
Q ss_pred cCCCEEEeeccchHHHHH
Q 023084 215 YQSDFVPVGEDQKQHLEL 232 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~L 232 (287)
...|+...|.|-.+++.+
T Consensus 320 w~~~v~~iGKDii~fH~i 337 (616)
T PLN02224 320 WPASLHLIGKDILRFHAV 337 (616)
T ss_pred CCcceEEEeecccccHHH
Confidence 356899999999886543
No 165
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=34.31 E-value=39 Score=32.01 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.0
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++|....|..-.+.+.+-+++.+.++
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~ 165 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLN 165 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcC
Confidence 378888888888888888888888776
No 166
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=33.33 E-value=23 Score=37.39 Aligned_cols=27 Identities=37% Similarity=0.276 Sum_probs=22.4
Q ss_pred hHHHhhhhhhcCCCEEEeeccch-HHHH
Q 023084 205 PVLMASDILLYQSDFVPVGEDQK-QHLE 231 (287)
Q Consensus 205 PvLQaADIl~~~adlvpvG~DQ~-~hi~ 231 (287)
...|+.|||-...||--||.|-. ||++
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe 284 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD 284 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch
Confidence 45899999999999999999984 5543
No 167
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.76 E-value=30 Score=33.91 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCcchhhhHHHHHHHHHHHhccCcEEEEEecc-eeecCC
Q 023084 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDL-HAITLP 125 (287)
Q Consensus 88 TG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~-hA~t~~ 125 (287)
.|..||||| ++.++. ...|+|-|+|+ ++.+++
T Consensus 62 cGD~HLgN~-ga~~~~-----~G~V~f~i~DFDe~~~g~ 94 (410)
T COG4320 62 CGDAHLGNF-GAARNS-----KGNVVFKIADFDEGHLGQ 94 (410)
T ss_pred ecccccccc-hhhccC-----CCceEEEecccchhhccc
Confidence 478999997 553322 45799999997 344443
No 168
>PLN02946 cysteine-tRNA ligase
Probab=31.16 E-value=30 Score=35.98 Aligned_cols=35 Identities=20% Similarity=-0.026 Sum_probs=24.6
Q ss_pred chhhhchHHHhhhhhhcCCCEEEeeccch-HHHHHH
Q 023084 199 VALLTYPVLMASDILLYQSDFVPVGEDQK-QHLELT 233 (287)
Q Consensus 199 ~g~~~YPvLQaADIl~~~adlvpvG~DQ~-~hi~La 233 (287)
.|--+=..-|+...|-..-||--||.|-. ||+|--
T Consensus 260 PGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENE 295 (557)
T PLN02946 260 PGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENE 295 (557)
T ss_pred CcHHHHHHHHHHHHcCCCeeEeccccccCCCcccch
Confidence 34444456777777777899999999965 566543
No 169
>PLN02563 aminoacyl-tRNA ligase
Probab=30.13 E-value=44 Score=37.02 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.0
Q ss_pred cCCCEEEeeccc-hHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ-~~hi~LaRdla~r~n 241 (287)
+-+|+-.+|.|| .-|+..+|-....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 569999999999 567777777766543
No 170
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=29.50 E-value=52 Score=34.02 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
+.-|-.+|.||..|+.--..+++.++
T Consensus 325 d~~IyV~g~dq~~h~~~l~~~~~~lg 350 (562)
T PRK12451 325 DKALYVVGPEQSLHFNQFFTVLKKLG 350 (562)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHcC
Confidence 34566799999999999999999987
No 171
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.50 E-value=52 Score=34.36 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.7
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHh
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
--|-.+|.||..|+.-.+-+++.++
T Consensus 336 ~~IyV~gadq~~~~~ql~~~l~~~g 360 (577)
T COG0018 336 KLIYVLGADQHGHFKQLKAVLELLG 360 (577)
T ss_pred EEEEEeCCcchhHHHHHHHHHHHhc
Confidence 4456799999999999999999887
No 172
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=25.96 E-value=64 Score=34.02 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=9.3
Q ss_pred EEEeeccchHHHH
Q 023084 219 FVPVGEDQKQHLE 231 (287)
Q Consensus 219 lvpvG~DQ~~hi~ 231 (287)
+.+.|.|-...+.
T Consensus 287 v~~iGkDi~~fH~ 299 (673)
T PRK00133 287 YHFIGKDIIYFHT 299 (673)
T ss_pred EEEEeecchhHHH
Confidence 6678888877553
No 173
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=25.50 E-value=2.2e+02 Score=26.32 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=14.3
Q ss_pred CcchhhhHHHHHHHHHHHhccCcEEEEE
Q 023084 89 GSIHLGNYLGAIKNWIALQNSYETLFFI 116 (287)
Q Consensus 89 G~lHLGh~vg~i~~~~~LQ~g~~~~ilI 116 (287)
.++|.||...+ ....+ +-+.+-+++|
T Consensus 32 dPiH~GHl~ia-~~~~~-~l~ld~v~~i 57 (243)
T PRK06973 32 DPIHDGHLALA-RRFAD-VLDLTELVLI 57 (243)
T ss_pred CCCcHHHHHHH-HHHHH-HcCCCEEEEE
Confidence 56999997654 23322 1145555554
No 174
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.41 E-value=67 Score=34.99 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=14.6
Q ss_pred cCCCEEEeeccchHHHHH
Q 023084 215 YQSDFVPVGEDQKQHLEL 232 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~L 232 (287)
|=.|+=.+|.|...++.|
T Consensus 525 ~PVD~yigG~ehavlHLl 542 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLL 542 (814)
T ss_pred cChheeecchhHHHHHHH
Confidence 358999999999987654
No 175
>PLN02413 choline-phosphate cytidylyltransferase
Probab=24.10 E-value=2.2e+02 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCceEEEeecCCCcchhhhHHHHHHHHH
Q 023084 68 TAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWI 104 (287)
Q Consensus 68 ~~~~~~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~ 104 (287)
.++.++...++.+||+- .-=.-+|.||.- .|+...
T Consensus 17 ~~~~~~~~~r~~rVyvd-G~FDLfH~GHir-~L~qAK 51 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD-GIYDLFHFGHAR-SLEQAK 51 (294)
T ss_pred CCCCCCCCCCceEEEEe-CchhhCCHHHHH-HHHHHH
Confidence 44555566678888864 101239999963 344443
No 176
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.89 E-value=91 Score=34.56 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.5
Q ss_pred CCEEEeeccchHHH
Q 023084 217 SDFVPVGEDQKQHL 230 (287)
Q Consensus 217 adlvpvG~DQ~~hi 230 (287)
+|+..=|.||..=.
T Consensus 556 aD~~lEGsDQ~RGW 569 (933)
T COG0060 556 ADFYLEGSDQTRGW 569 (933)
T ss_pred CcEEEEeccccchh
Confidence 59999999996544
No 177
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=22.77 E-value=62 Score=33.09 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=17.9
Q ss_pred HhhhhhhcCCCEEEeeccchH-HHHHHHHH
Q 023084 208 MASDILLYQSDFVPVGEDQKQ-HLELTREL 236 (287)
Q Consensus 208 QaADIl~~~adlvpvG~DQ~~-hi~LaRdl 236 (287)
|+...|--.-||.-+|.|-.+ |+|-=+-.
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aq 254 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAI 254 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHH
Confidence 344444345799999999764 65543333
No 178
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=20.47 E-value=4.3e+02 Score=20.79 Aligned_cols=31 Identities=13% Similarity=0.029 Sum_probs=14.6
Q ss_pred cchhhhHHHHHHHHHHHhccCc-EEEEEecceee
Q 023084 90 SIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAI 122 (287)
Q Consensus 90 ~lHLGh~vg~i~~~~~LQ~g~~-~~ilIaD~hA~ 122 (287)
++|.||.-. +....++- ..+ ++++.+|....
T Consensus 8 P~H~GH~~~-l~~a~~~~-~~~~vi~v~~~~~~~ 39 (157)
T PF01467_consen 8 PPHNGHLNL-LREARELF-DEDLVIVVPSDNSPH 39 (157)
T ss_dssp T--HHHHHH-HHHHHHHS-SESEEEEEEEEHHCH
T ss_pred cccHHHHHH-HHHHHHhc-ccccccccccccccc
Confidence 499999744 33443222 222 55556666544
Done!