Query 023084
Match_columns 287
No_of_seqs 182 out of 1350
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 9.7E-62 3.3E-66 462.3 18.9 200 75-287 12-211 (346)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 7.6E-62 2.6E-66 462.3 16.4 200 78-287 6-205 (341)
3 3prh_A Tryptophanyl-tRNA synth 100.0 3.1E-61 1.1E-65 464.6 19.6 195 79-287 36-230 (388)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 6.8E-59 2.3E-63 439.8 20.8 195 79-287 2-196 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 3E-59 1E-63 445.4 18.1 198 78-287 4-206 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 4.7E-59 1.6E-63 440.0 19.1 194 78-287 3-196 (322)
7 1yi8_B Tryptophanyl-tRNA synth 100.0 5.1E-58 1.7E-62 437.4 20.1 201 73-287 17-219 (351)
8 2el7_A Tryptophanyl-tRNA synth 100.0 1.9E-57 6.6E-62 431.3 20.0 194 79-287 2-199 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 9.8E-57 3.3E-61 427.0 17.4 194 77-287 11-209 (340)
10 3vgj_A Tyrosyl-tRNA synthetase 100.0 9.8E-51 3.4E-55 390.0 17.5 189 76-287 54-251 (373)
11 3jxe_A Tryptophanyl-tRNA synth 100.0 5.9E-51 2E-55 393.6 15.8 181 76-287 71-257 (392)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 3.2E-51 1.1E-55 393.6 12.2 192 76-287 31-255 (375)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 7.4E-51 2.5E-55 387.6 14.5 187 76-287 38-236 (348)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 9.9E-51 3.4E-55 388.8 15.1 187 76-287 33-242 (364)
15 3a04_A Tryptophanyl-tRNA synth 100.0 1.4E-49 4.7E-54 381.9 16.9 181 76-287 68-260 (372)
16 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.3E-48 4.5E-53 368.5 14.8 187 76-287 31-239 (322)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 9.3E-48 3.2E-52 362.2 16.9 184 76-287 30-218 (323)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.4E-47 8.1E-52 390.5 16.5 188 76-287 38-234 (690)
19 3hzr_A Tryptophanyl-tRNA synth 100.0 1.2E-46 4.2E-51 362.9 14.9 180 76-287 80-273 (386)
20 2jan_A Tyrosyl-tRNA synthetase 100.0 1.6E-46 5.4E-51 366.6 15.2 185 76-287 30-235 (432)
21 2pid_A Tyrosyl-tRNA synthetase 100.0 2.2E-46 7.4E-51 357.9 13.7 185 76-287 44-258 (356)
22 3tze_A Tryptophanyl-tRNA synth 100.0 3.6E-46 1.2E-50 361.6 14.9 180 76-287 99-293 (406)
23 2ip1_A Tryptophanyl-tRNA synth 100.0 5.7E-46 2E-50 362.8 16.3 181 76-287 100-299 (432)
24 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.5E-45 5.2E-50 359.8 17.7 186 76-287 35-236 (432)
25 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.1E-45 3.9E-50 354.5 16.3 184 77-287 34-226 (372)
26 2ts1_A Tyrosyl-tRNA synthetase 100.0 4.5E-46 1.6E-50 362.3 12.7 184 76-287 28-234 (419)
27 2zp1_A Tyrosyl-tRNA synthetase 100.0 1E-45 3.5E-50 347.7 14.3 178 76-287 26-208 (314)
28 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 4.4E-45 1.5E-49 355.5 18.4 183 76-287 30-235 (420)
29 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.7E-45 5.8E-50 355.7 15.0 186 76-287 37-231 (394)
30 1r6u_A Tryptophanyl-tRNA synth 100.0 1.5E-45 5.2E-50 360.1 13.4 180 76-287 106-306 (437)
31 1r6t_A Tryptophanyl-tRNA synth 100.0 4.2E-45 1.4E-49 360.5 14.0 179 76-287 153-353 (477)
32 1y42_X Tyrosyl-tRNA synthetase 100.0 1.8E-44 6.1E-49 348.5 16.7 198 76-287 62-297 (392)
33 3foc_A Tryptophanyl-tRNA synth 100.0 1.7E-44 5.7E-49 353.4 14.4 181 76-287 89-337 (451)
34 3i05_A Tryptophanyl-tRNA synth 100.0 1.9E-44 6.4E-49 348.6 13.0 180 76-287 76-274 (395)
35 3hv0_A Tryptophanyl-tRNA synth 100.0 3.2E-44 1.1E-48 346.8 13.0 180 76-287 72-270 (393)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.5E-34 1.2E-38 293.2 14.8 179 74-286 378-567 (690)
37 1nzj_A Hypothetical protein YA 99.4 5.5E-14 1.9E-18 131.2 5.8 172 86-287 13-232 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.4 7.1E-13 2.4E-17 131.4 8.4 178 86-287 14-261 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.3 8.6E-13 2.9E-17 130.0 7.6 173 86-287 9-247 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.3 6.1E-13 2.1E-17 131.6 1.7 179 80-287 27-259 (488)
41 2cfo_A Glutamyl-tRNA synthetas 99.2 1.3E-10 4.6E-15 115.0 13.8 173 85-287 8-251 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 99.2 1.5E-12 5.3E-17 131.4 -0.5 180 79-287 130-363 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.9 8.4E-09 2.9E-13 101.8 10.6 180 79-287 14-266 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.8 6.5E-08 2.2E-12 95.8 13.6 179 78-287 25-268 (490)
45 4gri_A Glutamate--tRNA ligase; 98.6 1.6E-07 5.4E-12 93.3 11.6 173 86-287 32-277 (512)
46 3aii_A Glutamyl-tRNA synthetas 98.6 2.8E-07 9.7E-12 92.3 12.8 174 81-287 97-333 (553)
47 1qtq_A GLNRS, protein (glutami 98.4 6.3E-07 2.2E-11 89.8 8.2 94 79-180 27-130 (553)
48 2hz7_A Glutaminyl-tRNA synthet 98.1 1.8E-05 6.1E-10 82.8 13.4 94 80-180 68-170 (851)
49 1iq0_A Arginyl-tRNA synthetase 96.9 0.0014 4.8E-08 65.9 7.0 41 79-119 106-152 (592)
50 1irx_A Lysyl-tRNA synthetase; 96.0 0.011 3.8E-07 58.3 7.3 79 78-159 21-129 (523)
51 3u1f_A Methionyl-tRNA syntheta 95.9 0.033 1.1E-06 54.6 10.3 76 76-151 8-97 (542)
52 3kfl_A Methionyl-tRNA syntheta 95.3 0.12 4.2E-06 51.3 11.6 88 70-159 19-120 (564)
53 4dlp_A Aminoacyl-tRNA syntheta 95.3 0.14 4.8E-06 50.4 11.9 80 78-159 25-119 (536)
54 3h99_A Methionyl-tRNA syntheta 95.1 0.093 3.2E-06 51.9 10.2 80 78-159 19-112 (560)
55 2d5b_A Methionyl-tRNA syntheta 94.7 0.17 5.8E-06 49.0 10.5 78 80-159 5-97 (500)
56 1rqg_A Methionyl-tRNA syntheta 94.2 0.14 4.9E-06 52.5 9.3 74 78-151 3-91 (722)
57 2csx_A Methionyl-tRNA syntheta 93.8 0.33 1.1E-05 47.1 10.6 79 79-159 6-99 (497)
58 2x1l_A Methionyl-tRNA syntheta 92.7 0.4 1.4E-05 46.8 9.2 71 87-159 23-106 (524)
59 3tqo_A Cysteinyl-tRNA syntheta 91.9 0.38 1.3E-05 47.1 7.9 75 77-151 24-112 (462)
60 1li5_A Cysrs, cysteinyl-tRNA s 91.7 0.54 1.8E-05 45.7 8.7 82 76-159 20-116 (461)
61 3c8z_A Cysteinyl-tRNA syntheta 91.6 0.77 2.6E-05 43.8 9.6 81 78-160 39-134 (414)
62 4arc_A Leucine--tRNA ligase; l 89.7 1 3.6E-05 47.3 9.2 74 77-150 53-140 (880)
63 3sp1_A Cysteinyl-tRNA syntheta 88.9 2.5 8.5E-05 41.7 10.8 73 78-151 42-139 (501)
64 2csx_A Methionyl-tRNA syntheta 87.6 0.48 1.6E-05 45.9 4.6 14 215-228 249-262 (497)
65 2d5b_A Methionyl-tRNA syntheta 86.7 0.55 1.9E-05 45.4 4.5 15 215-229 250-264 (500)
66 1gax_A Valrs, valyl-tRNA synth 86.4 1.2 4E-05 46.8 7.0 71 78-148 35-135 (862)
67 2x1l_A Methionyl-tRNA syntheta 82.9 0.97 3.3E-05 44.1 4.3 15 215-229 264-278 (524)
68 3u1f_A Methionyl-tRNA syntheta 82.9 0.81 2.8E-05 44.7 3.8 15 216-230 278-292 (542)
69 2v0c_A Aminoacyl-tRNA syntheta 82.6 2.2 7.5E-05 44.7 7.1 73 78-150 34-120 (878)
70 1wkb_A Leucyl-tRNA synthetase; 81.0 2 6.9E-05 44.3 6.1 44 79-122 36-85 (810)
71 1f7u_A Arginyl-tRNA synthetase 80.6 1 3.5E-05 45.4 3.6 38 82-119 149-192 (607)
72 2zue_A Arginyl-tRNA synthetase 79.8 1.1 3.6E-05 45.4 3.4 40 80-119 123-168 (629)
73 1ffy_A Isoleucyl-tRNA syntheta 74.5 2.9 9.8E-05 44.1 5.0 24 214-237 546-572 (917)
74 1ile_A Ilers, isoleucyl-tRNA s 74.2 1.3 4.6E-05 45.8 2.4 45 77-121 38-88 (821)
75 1ile_A Ilers, isoleucyl-tRNA s 73.9 3 0.0001 43.2 4.9 14 215-228 543-556 (821)
76 3c8z_A Cysteinyl-tRNA syntheta 73.9 1.9 6.5E-05 41.0 3.2 27 211-237 239-266 (414)
77 3fnr_A Arginyl-tRNA synthetase 73.7 2 7E-05 41.8 3.4 39 82-120 36-80 (464)
78 3kfl_A Methionyl-tRNA syntheta 73.3 2 6.9E-05 42.5 3.3 16 215-230 293-308 (564)
79 1li5_A Cysrs, cysteinyl-tRNA s 69.2 3 0.0001 40.4 3.4 20 211-230 215-235 (461)
80 1wkb_A Leucyl-tRNA synthetase; 68.9 4.2 0.00014 41.9 4.7 19 215-233 602-621 (810)
81 4dlp_A Aminoacyl-tRNA syntheta 68.5 3.1 0.00011 40.7 3.4 14 216-229 276-289 (536)
82 1gax_A Valrs, valyl-tRNA synth 66.7 3.1 0.00011 43.5 3.2 51 215-287 480-532 (862)
83 1wz2_A Leucyl-tRNA synthetase; 65.7 5.1 0.00018 42.3 4.6 19 215-233 602-621 (967)
84 3tqo_A Cysteinyl-tRNA syntheta 65.6 3.2 0.00011 40.5 2.8 33 206-240 213-246 (462)
85 3fnr_A Arginyl-tRNA synthetase 64.1 2.1 7.3E-05 41.7 1.3 26 216-241 234-261 (464)
86 1ffy_A Isoleucyl-tRNA syntheta 60.3 3.2 0.00011 43.7 1.9 75 77-151 48-150 (917)
87 3h99_A Methionyl-tRNA syntheta 59.4 4.8 0.00017 39.5 2.9 12 219-230 303-314 (560)
88 3sp1_A Cysteinyl-tRNA syntheta 57.9 8.8 0.0003 37.8 4.4 31 208-238 245-276 (501)
89 1irx_A Lysyl-tRNA synthetase; 57.8 4.9 0.00017 39.3 2.6 52 214-287 228-283 (523)
90 1wz2_A Leucyl-tRNA synthetase; 55.1 4.1 0.00014 43.1 1.6 40 77-116 34-78 (967)
91 3cov_A Pantothenate synthetase 51.2 41 0.0014 31.0 7.5 27 215-241 151-177 (301)
92 2v0c_A Aminoacyl-tRNA syntheta 48.4 12 0.0004 39.3 3.8 25 215-239 530-555 (878)
93 4arc_A Leucine--tRNA ligase; l 43.4 15 0.00051 38.6 3.6 26 215-240 542-568 (880)
94 3oqi_A YVMC, putative uncharac 36.7 1.5E+02 0.0052 26.6 8.7 86 78-167 29-130 (257)
95 3ag6_A Pantothenate synthetase 32.5 22 0.00075 32.5 2.5 26 216-241 141-166 (283)
96 4erh_A Outer membrane protein 29.7 1.8E+02 0.0063 22.7 7.5 45 111-155 55-101 (148)
97 3oqv_A ALBC; rossman fold, cyc 26.4 2E+02 0.0068 25.6 7.6 83 76-160 27-122 (247)
98 1v8f_A Pantoate-beta-alanine l 25.0 34 0.0011 31.1 2.3 26 216-241 136-161 (276)
99 3inn_A Pantothenate synthetase 24.5 1.4E+02 0.0048 27.6 6.4 27 215-241 160-186 (314)
100 2zue_A Arginyl-tRNA synthetase 21.6 37 0.0013 34.1 2.0 25 217-241 378-402 (629)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=9.7e-62 Score=462.25 Aligned_cols=200 Identities=55% Similarity=0.913 Sum_probs=187.9
Q ss_pred CCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084 75 SSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 154 (287)
Q Consensus 75 ~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i 154 (287)
...+++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++|
T Consensus 12 ~~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 91 (346)
T 3n9i_A 12 VSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTI 91 (346)
T ss_dssp ---CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CCCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 34467999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (287)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR 234 (287)
|+||+|++|.+++|+|.|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+||||
T Consensus 92 f~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltR 170 (346)
T 3n9i_A 92 FVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSR 170 (346)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHH
T ss_pred EeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHH
Confidence 999999999999999999999999999999999887654 5789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|+|+|||+.||. +|++|++++++.+++||||+||++|||||
T Consensus 171 dia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS 211 (346)
T 3n9i_A 171 DIASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKS 211 (346)
T ss_dssp HHHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTT
T ss_pred HHHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCC
Confidence 999999999983 58999999987667899999998999998
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=7.6e-62 Score=462.30 Aligned_cols=200 Identities=50% Similarity=0.833 Sum_probs=188.3
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
+++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla 237 (287)
|+|++|.+++|+|.|.+++++|+||.+||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||++||||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999987764 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|||+.||.+ .++|++|++++++.+++||||+||++|||||
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS 205 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKS 205 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTT
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCC
Confidence 9999999831 1248999999986567899998898899998
No 3
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=3.1e-61 Score=464.62 Aligned_cols=195 Identities=54% Similarity=0.861 Sum_probs=178.4
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS 158 (287)
.+||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||
T Consensus 36 ~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS 115 (388)
T 3prh_A 36 QTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQS 115 (388)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEecc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (287)
Q Consensus 159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~ 238 (287)
+|++|.+++|+|+|.+++++|+|+.+||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||||+
T Consensus 116 ~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~ 193 (388)
T 3prh_A 116 EVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAE 193 (388)
T ss_dssp GSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887653 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|||+.||. +|.+|++++++.+++||||+||++|||||
T Consensus 194 rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS 230 (388)
T 3prh_A 194 RFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKS 230 (388)
T ss_dssp HHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTT
T ss_pred HhCcccCC------------CcccchhhhcccccccccCCCCCCccCCC
Confidence 99999973 58999999987778999998888999998
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=6.8e-59 Score=439.83 Aligned_cols=195 Identities=53% Similarity=0.857 Sum_probs=184.6
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS 158 (287)
+++|+||+|||.+|||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|+.||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred chhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHH
Q 023084 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (287)
Q Consensus 159 ~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~ 238 (287)
+|++|.+++|+++|.+++++|+||.+||++.++ + +++++|+|+||+||||||++|++|+||||.||++|++++||+|+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988765 2 67899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 239 r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|||+.||. +|++|++++++..++||||++|++|||||
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS 196 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKS 196 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTT
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCC
Confidence 99999983 58999999975557899996666899998
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3e-59 Score=445.42 Aligned_cols=198 Identities=40% Similarity=0.648 Sum_probs=183.5
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
++++|+||+|||.||||||+|+|++|++||++++++|+|||+||+|++.|++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-----CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-----~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~L 232 (287)
|+|++|.+++|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||.||++|+++
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765542 367899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 233 aRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+||+|++||+.||. +|++|++++++..++||||++|++|||||
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS 206 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKS 206 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSS
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCC
Confidence 99999999999983 58999999976557899997667899998
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.7e-59 Score=439.99 Aligned_cols=194 Identities=40% Similarity=0.710 Sum_probs=182.2
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~q 157 (287)
..++|+||+|||.+|||||+|+|++|++||+|++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999988999999999999999999999999889999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHH
Q 023084 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (287)
Q Consensus 158 S~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla 237 (287)
|+|++|.+++|.++|.+++++|+|+.+||++..+. +++++|+|+||+||||||++|++|+||||.||++|++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999886653 5799999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 238 ~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|||+.||. +|++|++++....++|||| || +|||||
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS 196 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKS 196 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGG
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCC
Confidence 999999973 5999999986445679999 78 799998
No 7
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=5.1e-58 Score=437.45 Aligned_cols=201 Identities=31% Similarity=0.509 Sum_probs=185.2
Q ss_pred CCCCCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 73 ~~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++.++++++|+||+|||.||||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|
T Consensus 17 ~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 96 (351)
T 1yi8_B 17 AATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQK 96 (351)
T ss_dssp ----CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred cccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhh
Confidence 3336689999999999999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (287)
Q Consensus 152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi 230 (287)
+.||+||+|++|.++.|.++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||.||++|+
T Consensus 97 ~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi 176 (351)
T 1yi8_B 97 TTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPML 176 (351)
T ss_dssp EEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHH
Confidence 999999999999999999999999999999999999887653 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+++||+|+|||+.||. +|++|+++++.. ++|||| ||++|||||
T Consensus 177 ~l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS 219 (351)
T 1yi8_B 177 EQTREIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKS 219 (351)
T ss_dssp HHHHHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTT
T ss_pred HHHHHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCC
Confidence 9999999999999973 589999987533 569999 897899998
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-57 Score=431.27 Aligned_cols=194 Identities=51% Similarity=0.873 Sum_probs=182.1
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g-~~~~ilIaD~hA~t~~--~d~~~i~~~~~~~i~~~lA~GiDp~kt~i 154 (287)
+++|+||+|||+||||||+|+|++|++||+ | |+++|+|||+||+|++ .+++++++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999999 7 9999999999999997 79999999999999999999999999999
Q ss_pred EEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHH
Q 023084 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (287)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaR 234 (287)
|+||+|++|.+++|.++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987643 36799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 235 dla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
|+|+|||+.||. +|++|+++++..+++|||| ||++|||||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS 199 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKS 199 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTT
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCC
Confidence 999999999983 5899999998644579999 677799998
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=9.8e-57 Score=426.97 Aligned_cols=194 Identities=41% Similarity=0.720 Sum_probs=177.6
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 023084 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (287)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i 154 (287)
..+++|+|++|||.||||||+|+|++|++||+ |++++|+|||+||+|+ +.||+++++++++++++|+|+|+||+|+.|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 46899999999999999999999999999999 7999999999999998 779999999999999999999999999999
Q ss_pred EEccchhhhhHHHHHHhccCCHHHHhchhcHHH---HHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHHH
Q 023084 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (287)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~---~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~ 231 (287)
|+||+|++|.++.|.++|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||.||++|++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 232 LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++||+|+|||+.||. +|++|++++... ++|||| ||+ |||||
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS 209 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKS 209 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGG
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCC
Confidence 999999999999872 589999877532 569999 686 99998
No 10
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=9.8e-51 Score=390.01 Aligned_cols=189 Identities=20% Similarity=0.276 Sum_probs=166.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
+++++||+||+|||.+||||++..+.+|++||+ ||+++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 54 ~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k 133 (373)
T 3vgj_A 54 KRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMEN 133 (373)
T ss_dssp CSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTT
T ss_pred CCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhh
Confidence 457899999999999999996543346889999 99999999999999983 58999999999999999999999999
Q ss_pred eEEEEccchh-hhhHHHHHHhc----cCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084 152 ASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (287)
Q Consensus 152 t~i~~qS~~~-~~~el~w~L~~----~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ 226 (287)
++||+||+|+ +|.+++|.+.+ .++++|+.++.+++.+. ..+++++|+|+||+||||||++|++|+||||.||
T Consensus 134 ~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ 210 (373)
T 3vgj_A 134 VQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQ 210 (373)
T ss_dssp EEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhh
Confidence 9999999998 89999998654 78999998888765432 2257899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|++++||+|+|||+.| +|..+.+++ ||||+||++|||||
T Consensus 211 ~~~l~l~Rdla~r~~~~~-----------------~~~~l~~p~---l~gL~dG~~KMSKS 251 (373)
T 3vgj_A 211 RKVNMLAREYCDIKKIKK-----------------KPVILSHGM---LPGLLEGQEKMSKS 251 (373)
T ss_dssp HHHHHHHHHHHHHHTCSC-----------------CCEEEEBCC---CCCSSTTCCSCCSS
T ss_pred HHHHHHHHHHHHHhCCCC-----------------CceEEeCCe---eecCCCCCCCCcCC
Confidence 999999999999999543 366677776 99998998999998
No 11
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.9e-51 Score=393.62 Aligned_cols=181 Identities=18% Similarity=0.287 Sum_probs=166.2
Q ss_pred CCCceEEEeecCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
++++++|+|++|||.+|||||++++ .+| ||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 5689999999999999999999986 666 887 8899999999999987 3 6999999999999999999999999
Q ss_pred ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc-CCCEEEeeccchHH
Q 023084 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (287)
Q Consensus 151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~-~adlvpvG~DQ~~h 229 (287)
|++||+||+|+++.++.|.+++.+++++++++.+|+ +++++|+|+||+|||||||++ ++|+||||.||++|
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999998876643 568999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 230 i~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+++|||+|+||| +++|+++++++ ||||+++++|||||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~~~---l~gLdG~~~KMSKS 257 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHSKF---VPSLTSLSGKMSAS 257 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEECC---CCCSSCSSSCCCTT
T ss_pred HHHHHHHHHHcC------------------CCCCeeeeccc---ccCCCCCccccccC
Confidence 999999999998 56899998876 99995444699998
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.2e-51 Score=393.59 Aligned_cols=192 Identities=20% Similarity=0.271 Sum_probs=169.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHH-HHHH----HHHHHcC
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACG 146 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~-~~~i----~~~lA~G 146 (287)
++++++|+||+|||.+|||||++++.+|++||+ |++++|+|||+||+|++ .+++++++++ ++++ ++|+|+|
T Consensus 31 ~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G 110 (375)
T 2cyc_A 31 GAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMG 110 (375)
T ss_dssp TCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 357899999999999999998888999999999 89999999999999985 3899999999 8888 9999999
Q ss_pred CCCCceEEEEccchhhhhHHHHHH----hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084 147 IDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (287)
Q Consensus 147 iDp~kt~i~~qS~~~~~~el~w~L----~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv 222 (287)
+||+|++||+||+|+++. ++|.+ ++.+++++|.|+.+|+.+. ..+.+++|+|+||+||||||++|++|+|||
T Consensus 111 ~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~ 186 (375)
T 2cyc_A 111 GDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHA 186 (375)
T ss_dssp CCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeecc
Confidence 999999999999999887 88886 8999999999999988753 225689999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHhh---hh-CCccccccCCCCCcccCCCceecCCCCcccccCCCC----------------CC
Q 023084 223 GEDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LS 282 (287)
Q Consensus 223 G~DQ~~hi~LaRdla~r~n~---~~-g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg----------------~~ 282 (287)
|.||++|++++||+|+|||+ .| |. .| +|..+.+++ ||||++| ++
T Consensus 187 G~DQ~~~i~l~rdla~r~n~~~~~~~g~------------~~-~~~~~~~~~---l~gL~g~~~~~~~~~~~~~~~~~~~ 250 (375)
T 2cyc_A 187 GMDQRKAHVIAIEVAQKLRYHPIVHEGE------------KL-KPVAVHHHL---LLGLQEPPKWPIESEEEFKEIKAQM 250 (375)
T ss_dssp EGGGHHHHHHHHHHGGGCSSSCEEETTE------------EE-CCEEEEECC---CBCSSCCSSSSCCSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCcccccccc------------cC-ccEEecccc---ccCCCCcccccccchhhhhhhhhhh
Confidence 99999999999999999996 12 21 12 677766665 9999543 47
Q ss_pred CCCCC
Q 023084 283 KVLTI 287 (287)
Q Consensus 283 KMSKS 287 (287)
|||||
T Consensus 251 KMSKS 255 (375)
T 2cyc_A 251 KMSKS 255 (375)
T ss_dssp BGGGS
T ss_pred cccCC
Confidence 99998
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=7.4e-51 Score=387.57 Aligned_cols=187 Identities=20% Similarity=0.254 Sum_probs=154.5
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC---CHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~---d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|||.+|||||++.+.+|++||+ ||+++|+|||+||+|++. +++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k 117 (348)
T 2j5b_A 38 GRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDG 117 (348)
T ss_dssp TCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccc
Confidence 468899999999999999998888899999999 899999999999999853 8999999999999999999999999
Q ss_pred eEEEEccch-hhhhHHHHHHhc----cCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---CCCEEEee
Q 023084 152 ASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVG 223 (287)
Q Consensus 152 t~i~~qS~~-~~~~el~w~L~~----~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~---~adlvpvG 223 (287)
+.||+||+| +++. ++|.+.+ .+++++|.++.+++.+. +.+++++|+|+||+||||||++| ++|+||||
T Consensus 118 ~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G 193 (348)
T 2j5b_A 118 TRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLG 193 (348)
T ss_dssp EEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCB
T ss_pred eEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEec
Confidence 999999998 5666 8998765 77788777776665432 22578999999999999999999 99999999
Q ss_pred ccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 224 ~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
.||++|++++||+|++||+ ..|..+.++. ||||+||++|||||
T Consensus 194 ~DQ~~~i~l~Rdia~r~~~------------------~~p~~~~~~~---l~gL~dg~~KMSKS 236 (348)
T 2j5b_A 194 IDQRKVNMLAIEYANDRGL------------------KIPISLSHHM---LMSLSGPKKKMSKS 236 (348)
T ss_dssp GGGHHHHHHHHHHHHHTTC------------------CCCEEEEBCC---CCCTTCSSCCCSTT
T ss_pred cChHHHHHHHHHHHHHhCC------------------CCceeecCcc---ccCCCCcccccccC
Confidence 9999999999999999984 3466666665 99999898899998
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=9.9e-51 Score=388.77 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=163.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|
T Consensus 33 ~~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k 111 (364)
T 2cya_A 33 GARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVER 111 (364)
T ss_dssp CSCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45789999999999999999 677889999999 89999999999999985 68999999999999999999999999
Q ss_pred eEEEEccchhhhhHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084 152 ASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (287)
Q Consensus 152 t~i~~qS~~~~~~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~ 227 (287)
++||+||+|+++ +++|. ++|.+++++|+|+.+|+.+... ..++++|+|+||+||||||++|++|+||||.||+
T Consensus 112 ~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~--~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~ 188 (364)
T 2cya_A 112 VRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRAE--EAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQR 188 (364)
T ss_dssp CEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------CC--GGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred eEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhcC--CCCccchhhhhHHHHHhhHHhcCCCEEeccchHH
Confidence 999999999876 56776 9999999999999998876432 2458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCC---------------CCCCCCCC
Q 023084 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKVLTI 287 (287)
Q Consensus 228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~d---------------g~~KMSKS 287 (287)
+|++++||+|+||| +++|..+++++ ||||++ |.+|||||
T Consensus 189 ~~~~l~rdla~r~~------------------~~~p~~l~~~l---l~~l~g~~~~~~~~~~~~~~~~g~KMSKS 242 (364)
T 2cya_A 189 KAHMLARDVAEKLG------------------RKKPVAIHTPI---ISSLQGPGRMEASQGEIDDVLAEVKMSKS 242 (364)
T ss_dssp HHHHHHHHHHTTTT------------------CCCCEEEEECC---CBCSSCC----------------CBCCSS
T ss_pred HHHHHHHHHHHHcC------------------CCCceeeccce---eeCCCcccccccccccccccccccccCCC
Confidence 99999999999998 45788888776 999954 26799998
No 15
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.4e-49 Score=381.89 Aligned_cols=181 Identities=26% Similarity=0.388 Sum_probs=162.7
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC--CHHHHHHHHHHHHHHHHHcCCCCCce
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKA 152 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~--d~~~i~~~~~~~i~~~lA~GiDp~kt 152 (287)
+++++||||++|||.+|||||++++ +|+.+|+ +++++|+|||+||+|++. +++.+++++++++++|+|+||||+|+
T Consensus 68 gk~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt 146 (372)
T 3a04_A 68 GERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDT 146 (372)
T ss_dssp TCCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTC
T ss_pred CCCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHc
Confidence 5789999999999999999999875 6777886 899999999999999853 56779999999999999999999999
Q ss_pred EEEEccc-hhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhh--------cCCCEEEee
Q 023084 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVG 223 (287)
Q Consensus 153 ~i~~qS~-~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~--------~~adlvpvG 223 (287)
+||+||+ .+++.++.|.+++.+++++++++.+ ..+.|.++||+||||||++ |++++||||
T Consensus 147 ~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG 215 (372)
T 3a04_A 147 EFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVG 215 (372)
T ss_dssp EEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEE
T ss_pred chhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccc
Confidence 9999999 4689999999999999998887642 4578999999999999999 556699999
Q ss_pred ccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 224 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 224 ~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+||+||+|||||+|+|||+.|+ +++|..+++++ +||| || .|||||
T Consensus 216 ~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~~---~pgl-dG-~KmS~S 260 (372)
T 3a04_A 216 ADQDPHLRLTRDLADRMAGVVE--------------LERPASTYHKL---QPGL-DG-RKMSSS 260 (372)
T ss_dssp GGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred hhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhcc---cCCC-CC-CccCCC
Confidence 9999999999999999998876 67899999887 9999 78 488887
No 16
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.3e-48 Score=368.53 Aligned_cols=187 Identities=16% Similarity=0.196 Sum_probs=165.7
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHH---HHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAA 140 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~---~~~i~ 140 (287)
++++++|+||+|||+ +|||||++ +.+|++||+ |++++|+|||+||+|+ |. +++++++++ +++++
T Consensus 31 ~~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~ 109 (322)
T 2yxn_A 31 QGPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVA 109 (322)
T ss_dssp HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHG
T ss_pred CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 457899999999999 99999996 679999999 8999999999999998 43 899999999 78888
Q ss_pred HHHHcCCCCCceEEEEccchhh-hhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084 141 IYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (287)
Q Consensus 141 ~~lA~GiDp~kt~i~~qS~~~~-~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~-- 215 (287)
.|+|+|+||+|+.||.||+|+. +.++.|+ +++.++++++.++.++|.+.... .+++++|+|+||+||||||++|
T Consensus 110 ~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~ 188 (322)
T 2yxn_A 110 PFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNK 188 (322)
T ss_dssp GGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhc
Confidence 8999999999999999999965 4777777 89999999999999988765421 2578999999999999999999
Q ss_pred --CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 216 --QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 216 --~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|+++||.||++|++++||+|+|||+ ..|..+..|+ |||| || +|||||
T Consensus 189 ~~~~~v~~gG~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~pl---l~gl-dG-~KMSKS 239 (322)
T 2yxn_A 189 QYGVVLCIGGSDQWGNITSGIDLTRRLHQ------------------NQVFGLTVPL---ITKA-DG-TKFGKT 239 (322)
T ss_dssp HHCEEEEEECTTCHHHHHHHHHHHHHHHC------------------CCCEEEECCC---CBCT-TS-CBTTEE
T ss_pred cCCceEEecCchhHHHHHHHHHHHHHhCC------------------CCceeeccCc---cCCC-Cc-ccccCC
Confidence 999999999999999999999999983 2456666676 9999 88 599998
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=9.3e-48 Score=362.22 Aligned_cols=184 Identities=24% Similarity=0.397 Sum_probs=166.6
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~-d~~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
++++++|+|++|||++||||+ +++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|+.
T Consensus 30 ~~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~ 108 (323)
T 2cyb_A 30 KEKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAK 108 (323)
T ss_dssp CSCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCE
T ss_pred CCCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 457899999999999999996 55789999999 899999999999999964 999999999999999999999999999
Q ss_pred EEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084 154 VFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (287)
Q Consensus 154 i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi 230 (287)
||+||+|+ ++.++.|.++|.+++++++|+.++.. +.. +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus 109 i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~ 184 (323)
T 2cyb_A 109 FVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RRK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIH 184 (323)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SCS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred EEEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--ccc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHH
Confidence 99999995 78999999999999999999876532 121 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+++||+|++|| +++|..++.++ ||+| +| +|||||
T Consensus 185 ~l~rdla~~~~------------------~~~p~~l~~pl---l~~l-~G-~KMSKS 218 (323)
T 2cyb_A 185 MLARENLPRLG------------------YSSPVCLHTPI---LVGL-DG-QKMSSS 218 (323)
T ss_dssp HHHHHHGGGGT------------------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred HHHHHHHHhcC------------------CCCceEEecCc---ccCC-CC-CcccCC
Confidence 99999999998 35688888887 9999 68 699998
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.4e-47 Score=390.45 Aligned_cols=188 Identities=20% Similarity=0.326 Sum_probs=162.4
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC---CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~---~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
+++++||+||+|||.+||||++....+|++||+ ||+++|+|||+||+|++ .+++++++++++++++|+|+|+||+|
T Consensus 38 ~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 117 (690)
T 3p0j_A 38 KPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDK 117 (690)
T ss_dssp CTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHH
Confidence 468999999999999999997653346889999 89999999999999973 58899999999999999999999999
Q ss_pred eEEEEccc-hhhhhHHHHHHh----ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084 152 ASVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (287)
Q Consensus 152 t~i~~qS~-~~~~~el~w~L~----~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ 226 (287)
++||+||+ ++++.+++|.+. +.+|+++|.++.+++.+.. .++++|+|+||+||||||++|++|+||||.||
T Consensus 118 ~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ 193 (690)
T 3p0j_A 118 VLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQ 193 (690)
T ss_dssp EEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGG
T ss_pred eEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccH
Confidence 99999999 578999999864 4899999999998876432 23899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|++++||+|+|||+.| +|..+.+++ ||||+||++|||||
T Consensus 194 ~~~l~l~Rdla~r~n~~~-----------------~p~~l~~~~---l~gL~dG~~KMSKS 234 (690)
T 3p0j_A 194 RKVNMLAREYCDLIGRKL-----------------KPVILSHHM---LAGLKQGQAKMSKS 234 (690)
T ss_dssp HHHHHHHHHHHHHTTCCC-----------------CCEEEEBCC---CCCSSTTCSSCBTT
T ss_pred HHHHHHHHHHHHHhCCCC-----------------CceEeecCe---eecCCCCCcCCCCC
Confidence 999999999999999533 366666665 99999998999998
No 19
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.2e-46 Score=362.85 Aligned_cols=180 Identities=17% Similarity=0.196 Sum_probs=159.6
Q ss_pred CCCceEEEeecCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~-i~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|||++|||||+++ +.+| ||+ ++.++|+|+|+|+++++ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 568999999999999999999998 4666 898 67889999999999984 79999999999999999999999999
Q ss_pred eEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh--------cC-CCEEE
Q 023084 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL--------YQ-SDFVP 221 (287)
Q Consensus 152 t~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~--------~~-adlvp 221 (287)
+.||+||+|++ .+...+.+|.|+++|+++.++++ .+++++|+|+||+||||||++ ++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999976 34456678999999999988776 467999999999999998773 55 99999
Q ss_pred eeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 222 vG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
||.||++|++++||+|+||| +++|..+.+++ |||| ||.+|||||
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~~~---l~gL-dG~~KMSKS 273 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFHKM---VPLL-SGVTKFDIP 273 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECC---CCCT-TCTTCCCCC
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCceEeecCe---eeCC-CCCCccCcC
Confidence 99999999999999999998 56787776665 9999 676699998
No 20
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-46 Score=366.56 Aligned_cols=185 Identities=15% Similarity=0.161 Sum_probs=164.0
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C--------CCHHHHHHHHHHH---HHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAI 141 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~--------~d~~~i~~~~~~~---i~~ 141 (287)
++++++|+||+|||+ +||||+++ +.+|++||+ ||+++|+|||+||+|+ | .+++++++|++++ ++.
T Consensus 30 ~~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~ 108 (432)
T 2jan_A 30 RGPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLER 108 (432)
T ss_dssp HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 357899999999996 99999775 679999999 8999999999999998 5 6789999999766 677
Q ss_pred HHHcCCCCCceEEEEccchhh-hhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc---
Q 023084 142 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (287)
Q Consensus 142 ~lA~GiDp~kt~i~~qS~~~~-~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~--- 215 (287)
|+++|+||+|+.||+||+|.+ +..+.|+ +++.+++++|.|+.+||++. ..+++++|+|+||+||||||++|
T Consensus 109 ~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~ 185 (432)
T 2jan_A 109 FVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRR 185 (432)
T ss_dssp HSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999976 4577787 89999999999999998875 23678999999999999999999
Q ss_pred -CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 216 -~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|+||||.||++|++++||+|+|||+ ..|..+..|+ |||+ || +|||||
T Consensus 186 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~pl---L~~l-dG-~KMSKS 235 (432)
T 2jan_A 186 HGCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTVPL---VTAA-DG-TKFGKS 235 (432)
T ss_dssp HCCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEECCC---CBCT-TS-CBTTBC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccccc---ccCC-Cc-CcCCCC
Confidence 999999999999999999999999983 2455566666 9999 88 599998
No 21
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=2.2e-46 Score=357.89 Aligned_cols=185 Identities=20% Similarity=0.200 Sum_probs=149.5
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL 143 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l 143 (287)
++++++|+||+|||+ |||||+++ +.+|++||+ |++++|+|||+||+|+ |. +++++++++++++++|+
T Consensus 44 g~~~~vy~G~~PTg~sLHLGhl~~-l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~ 122 (356)
T 2pid_A 44 SFPQTIYCGFDPTADSLHVGHLLA-LLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLE 122 (356)
T ss_dssp --CCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHH
Confidence 356899999999997 99999765 679999999 8999999999999998 42 68999999999999999
Q ss_pred HcCCCCCc-----------eEEEEccchhhhhHHHHHH---hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHh
Q 023084 144 ACGIDNSK-----------ASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA 209 (287)
Q Consensus 144 A~GiDp~k-----------t~i~~qS~~~~~~el~w~L---~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQa 209 (287)
|+ +||++ ++||+||+|..+.++.|.+ +..+++++|.++.+||.+.+. .+++++|+|+||+|||
T Consensus 123 a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQA 199 (356)
T 2pid_A 123 AL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQA 199 (356)
T ss_dssp HH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHH
T ss_pred Hh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHH
Confidence 99 88854 9999999997665566664 458999998888888765432 2578999999999999
Q ss_pred hhhhhc----CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCC
Q 023084 210 SDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVL 285 (287)
Q Consensus 210 ADIl~~----~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMS 285 (287)
|||++| ++|+||||.||++|++++||+|+|||+ .+|..+..|+ |||| || +|||
T Consensus 200 aDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~pl---l~~l-dG-~KMS 256 (356)
T 2pid_A 200 YDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG------------------EDVFGITVPL---ITST-TG-AKLG 256 (356)
T ss_dssp HHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS------------------CCCEEEEECC---CC----------
T ss_pred HHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccccc---ccCC-Cc-cccc
Confidence 999999 999999999999999999999999983 2455566666 9999 88 5999
Q ss_pred CC
Q 023084 286 TI 287 (287)
Q Consensus 286 KS 287 (287)
||
T Consensus 257 KS 258 (356)
T 2pid_A 257 KS 258 (356)
T ss_dssp --
T ss_pred CC
Confidence 98
No 22
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=3.6e-46 Score=361.56 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=159.5
Q ss_pred CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 76 ~~~~~iytGi~PTG-~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
++++++|+|++||| .+|||||++++ .+| ||+ |+.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 56899999999998 79999999984 566 888 7888999999999865 67999999999999999999999999
Q ss_pred ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhh--------hcCCCEEE
Q 023084 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (287)
Q Consensus 151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl--------~~~adlvp 221 (287)
|+.||.||+|++ .+..++.+|.|+.+|+++.++.+ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999975 23345678999999999988876 36799999999999999965 46799999
Q ss_pred eeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI 287 (287)
Q Consensus 222 vG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS 287 (287)
||.||++|++++||+|+||| +++|..+++++ |||| ||. +|||||
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS 293 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYVSL---LPDL-KGVNRKMSAS 293 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECC---CCCT-TSCCCCSSCS
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeeccCc---ccCC-CCCCcCCCCC
Confidence 99999999999999999998 67899887776 9999 675 699998
No 23
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=5.7e-46 Score=362.81 Aligned_cols=181 Identities=16% Similarity=0.218 Sum_probs=152.9
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecC-C-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084 76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~-~-~d~~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
++++++|+||+|| |.||||||++++ ...+||+ ||.++|+|||+||+++ + .+++.+++++++++++|+|+|+||+
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~-~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFV-FTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHH-HHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4588999999999 899999999976 3334887 8899999999999887 3 5889999999999999999999999
Q ss_pred ceEEEEccchh--hhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------cC
Q 023084 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (287)
Q Consensus 151 kt~i~~qS~~~--~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-----------~~ 216 (287)
|+.||+||+|+ .+.++.|. ++||+++++++++++ .+++++|+|+||+||||||++ ++
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 67777773 569999999888764 467899999999999999999 57
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|+||||.||++|++++||+|+||| |++|+.+++++ ||||+++++|||||
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~l---l~gLdG~~~KMSKS 299 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHSRF---FPALQGSTTKMSAS 299 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEECC---CCCTTC--------
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecccc---ccCCCCCccccCCC
Confidence 9999999999999999999999998 57898887776 99994334799998
No 24
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.5e-45 Score=359.83 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=151.4
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~l 143 (287)
++++++|+||+|||. +|||||++ +.+|++||+ ||+++|+|||+||+|+ | .+++++++++.++.+.+.
T Consensus 35 ~~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~ 113 (432)
T 1h3f_A 35 GRPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG 113 (432)
T ss_dssp CSCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT
T ss_pred CCCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH
Confidence 568899999999996 99999995 689999999 8999999999999998 4 235778877777666554
Q ss_pred HcCCC--CCceEEEEccchhhhhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCE
Q 023084 144 ACGID--NSKASVFVQSHVRAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (287)
Q Consensus 144 A~GiD--p~kt~i~~qS~~~~~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adl 219 (287)
+|+| |+|++||+||+|.++..+.|. +.+.++++++.+..+|+.+... .+++++|+|+||+||||||++|++|+
T Consensus 114 -~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l 190 (432)
T 1h3f_A 114 -KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADV 190 (432)
T ss_dssp -TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSE
T ss_pred -HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccE
Confidence 8899 999999999999776555555 4889999998888888877643 26789999999999999999999999
Q ss_pred EEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 220 vpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
||||.||++|++++||++++||. ..|..+..|+ |||| ||++|||||
T Consensus 191 ~~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~pl---l~gl-dG~~KMSKS 236 (432)
T 1h3f_A 191 EMGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLMPL---LVGL-DGREKMSKS 236 (432)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEECC---CBCT-TSSSBCCGG
T ss_pred EEechHHHHHHHHHHHHHHHhCC------------------CCceEeeccc---ccCC-CCccccCcC
Confidence 99999999999999999999972 2345555566 9999 897899998
No 25
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.1e-45 Score=354.55 Aligned_cols=184 Identities=22% Similarity=0.163 Sum_probs=153.1
Q ss_pred CCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 023084 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (287)
Q Consensus 77 ~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~d~~~i~~~~~---~--~i~~~lA~GiDp~ 150 (287)
++++||+||+|||.+|||||+++++.|..+|.|++++|+|+|+||+|+ +.++.++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999877766779999999999999997 667777655443 2 3335799999999
Q ss_pred ceEEEEccchh---hhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccch
Q 023084 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (287)
Q Consensus 151 kt~i~~qS~~~---~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~ 227 (287)
++.||+||+|+ ++.++.|.++|.+|+.+++++.+ .+.+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EVVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hhhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999995 78888999999999999888632 1111 2 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 228 ~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|++++||++++|+ +++|..++.++ |||| || +|||||
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~pl---l~gl-dG-~KMSKS 226 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMNPM---VPGL-TG-SKMSSS 226 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEECC---CCCS-SC-C-----
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecCc---cCCC-Cc-ccccCC
Confidence 99999999999996 56799998887 9999 78 599998
No 26
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=4.5e-46 Score=362.27 Aligned_cols=184 Identities=15% Similarity=0.198 Sum_probs=155.0
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHH---HH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AA 140 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~---i~ 140 (287)
++++++|+||+|||+ +|||||++ +.+|++||+ ||+++++|||+||+|+ |. +++++++|++++ ++
T Consensus 28 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~ 106 (419)
T 2ts1_A 28 EERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLG 106 (419)
T ss_dssp HSCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999 99999996 679999999 8999999999999998 53 899999999776 55
Q ss_pred HHHHcCCCCCceEEEEccchhhhhHHHHHHh---ccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084 141 IYLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (287)
Q Consensus 141 ~~lA~GiDp~kt~i~~qS~~~~~~el~w~L~---~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~-- 215 (287)
.|+++|+||+|+.||.||+|+.+..+.|.+. ..+++++|.+. ..++++.+ +++++|+|+||+||||||++|
T Consensus 107 ~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~---~~~k~r~~-~~is~~ef~YPlLQaaDil~l~~ 182 (419)
T 2ts1_A 107 RFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAK---ESVQSRIE-TGISFTEFSYMMLQAYDFLRLYE 182 (419)
T ss_dssp TSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTS---HHHHTTTT-TCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhcc---chhhhccC-CCcchHHHHHHHHHHHHHHHHhc
Confidence 6778999999999999999987655566554 56776655544 45544553 678999999999999999999
Q ss_pred --CCCEEEeeccchHHHHHHHHHHHHH-hhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 216 --QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 216 --~adlvpvG~DQ~~hi~LaRdla~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|+||||.||++|++++||+|+|| |. ..|..+..|+ ||++ || +|||||
T Consensus 183 ~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~~lt~pl---l~~l-dG-~KMSKS 234 (419)
T 2ts1_A 183 TEGCRLQIGGSDQWGNITAGLELIRKTKGE------------------ARAFGLTIPL---VTKA-DG-TKFGKT 234 (419)
T ss_dssp HHCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEECC---CCCT-TS-CCTTCC
T ss_pred cCCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeeccccc---ccCC-Cc-ccccCC
Confidence 9999999999999999999999999 73 2455566676 9999 89 599998
No 27
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1e-45 Score=347.65 Aligned_cols=178 Identities=24% Similarity=0.336 Sum_probs=156.9
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
++++++|+||+|||+||||| ++++.+|++||+ |++++|+|||+||++++ ++++++++++++++++|+|+|+| +.
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 56889999999999999999 666889999999 89999999999999985 48999999999999999999998 78
Q ss_pred EEEccchhhh---hHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccchHHH
Q 023084 154 VFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (287)
Q Consensus 154 i~~qS~~~~~---~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi 230 (287)
|++||+|+.+ +++.|.++|.+++++|+|+.+|+.+. . +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus 102 ~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~ 177 (314)
T 2zp1_A 102 YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH 177 (314)
T ss_dssp EEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred EEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence 9999999754 44445599999999999999876542 2 224999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 231 ~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+|+||+++ ++|..+.+++ |||| +|++|||||
T Consensus 178 ~l~R~i~~----------------------~~~~~~~~~~---l~~l-~G~~KMSKS 208 (314)
T 2zp1_A 178 MLARELLP----------------------KKVVCIHNPV---LTGL-DGEGKMSSS 208 (314)
T ss_dssp HHHHHHSS----------------------SCCEEEEECC---CBCT-TSSSBCCTT
T ss_pred HHHHHhcC----------------------CCcEEeeccc---cccC-CcccccCCC
Confidence 99999875 1467777676 9999 587899998
No 28
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=4.4e-45 Score=355.49 Aligned_cols=183 Identities=16% Similarity=0.170 Sum_probs=164.5
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-CC---------CHHHHHHHHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYL 143 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~~---------d~~~i~~~~~~~i~~~l 143 (287)
++++++|+||+|||+ +|||||++ +.+|++||+ ||+++|+|||+||+|+ |. +++++++|++++.++++
T Consensus 30 ~~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~ 108 (420)
T 1jil_A 30 KEQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMH 108 (420)
T ss_dssp HSCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHH
Confidence 357899999999999 99999996 679999999 8999999999999998 53 89999999999999999
Q ss_pred HcCCCC---CceEEEEccchh-hhhHHHHHH--hccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhc--
Q 023084 144 ACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-- 215 (287)
Q Consensus 144 A~GiDp---~kt~i~~qS~~~-~~~el~w~L--~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~-- 215 (287)
++ ||| +|+.+|.||+|. ++.++.|+. ++.+++++|.++.+||.+. + +++++|+|+||+||||||++|
T Consensus 109 ~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~ 183 (420)
T 1jil_A 109 NI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNR 183 (420)
T ss_dssp HH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhc
Confidence 99 998 999999999996 678999985 7999999999998887654 2 678999999999999999999
Q ss_pred --CCCEEEeeccchHHHHHHHHHHHHH-hhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 216 --QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 216 --~adlvpvG~DQ~~hi~LaRdla~r~-n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|+||||.||++|++++||+|+|| |. ..|..+..|+ |||+ || +|||||
T Consensus 184 ~~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~pl---l~~l-dG-~KMSKS 235 (420)
T 1jil_A 184 ELNCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTIPL---VTKS-DG-KKFGKS 235 (420)
T ss_dssp HHCEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEECC---CBCT-TS-CBTTBC
T ss_pred cCCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeeccc---ccCC-cc-ccccCC
Confidence 9999999999999999999999999 72 2456666676 9999 88 599998
No 29
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-45 Score=355.74 Aligned_cols=186 Identities=20% Similarity=0.167 Sum_probs=154.0
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhccCcEEEEEecceeecC-CC-CHHHHHHHH----HHHHHHHHHcCCCC
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDN 149 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~~~~ilIaD~hA~t~-~~-d~~~i~~~~----~~~i~~~lA~GiDp 149 (287)
+++++||+||+|||.||||||+++++.|..+|.|++++|+|+|+||+|+ +. ..+.++.++ +.+.+.|+|+|+||
T Consensus 37 ~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp 116 (394)
T 2dlc_X 37 KRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI 116 (394)
T ss_dssp CSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 4567999999999999999999999899888889999999999999997 43 344555554 34555788999999
Q ss_pred CceEEEEccch---hhhhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEeeccc
Q 023084 150 SKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (287)
Q Consensus 150 ~kt~i~~qS~~---~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpvG~DQ 226 (287)
+++.||+||+| +++.++.|.++|.+|+++++|+.+ ++.+ . .+++++|+|+||+||||||+++++|+||||.||
T Consensus 117 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~--~~~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ 192 (394)
T 2dlc_X 117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGA--DVVK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQ 192 (394)
T ss_dssp TTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTT--TTSC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGG
T ss_pred hHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccH--hhhc-c-cCCccceeeechhHhhccHhhhCCCEEecCccH
Confidence 99999999999 568899999999999999998754 2222 2 256899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 227 ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++|++++||++++|| +++|..++.++ |||| +|.+|||||
T Consensus 193 ~~~~~l~rdl~~r~~------------------~~~p~~l~~pl---l~gl-~~G~KMSKS 231 (394)
T 2dlc_X 193 RKIFVLAEENLPSLG------------------YKKRAHLMNPM---VPGL-AQGGKMSAS 231 (394)
T ss_dssp HHHHHHHHHHGGGGT------------------CCCCEEEEECC---CCCC-C--------
T ss_pred HHHHHHHHHHHHHcC------------------CCCCEEEeccc---ccCC-CCCCcCCCC
Confidence 999999999999998 56799999887 9999 633699998
No 30
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.5e-45 Score=360.10 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=158.8
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHHHHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 023084 76 SVKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (287)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~vg~i~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~k 151 (287)
++++++|+||+|| |.||||||++++ ...+||+ |+.++|+|||+|+++++ .+++++++++++++++|+|+|+||+|
T Consensus 106 ~~~~~vy~G~dPTag~LHLGh~v~~~-~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 106 KKPFYLYTGRGPSSEAMHVGHLIPFI-FTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH-HHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHH-HHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 5689999999999 899999999976 2334886 89999999999999985 68899999999999999999999999
Q ss_pred eEEEEccchhh----hhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------c
Q 023084 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (287)
Q Consensus 152 t~i~~qS~~~~----~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-----------~ 215 (287)
+.||+||+|+. +.++.| +|+||+++++++++++ .+++++|+|+||+||||||++ +
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999974 555544 5668999999888765 467899999999999999999 7
Q ss_pred CCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC-CCCCCCC
Q 023084 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKVLTI 287 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg-~~KMSKS 287 (287)
++|+||||.||++|++++||+|+||| |++|..+.+++ |||| || ++|||||
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~pl---l~gL-dG~~~KMSKS 306 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHSTF---FPAL-QGAQTKMSAS 306 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEECC---CEET-TEEEEECCTT
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeeccc---ccCC-CCCccccCCC
Confidence 88999999999999999999999998 57898887776 9999 56 3699998
No 31
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=4.2e-45 Score=360.51 Aligned_cols=179 Identities=20% Similarity=0.314 Sum_probs=157.5
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecCC-CCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~~-~d~~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
++++++|+||+|| |.||||||++++ .+| ||+ ||.++|+|||+|+++++ .+++++++++++++++|+|+|+||+
T Consensus 153 ~~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~ 230 (477)
T 1r6t_A 153 KKPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDIN 230 (477)
T ss_dssp TCCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999 899999999987 455 886 89999999999999984 6889999999999999999999999
Q ss_pred ceEEEEccchhh----hhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-----------
Q 023084 151 KASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----------- 214 (287)
Q Consensus 151 kt~i~~qS~~~~----~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~----------- 214 (287)
|+.||+||+|+. +.++.| +|+|++++++++++++ .+++++|+|+||+||||||++
T Consensus 231 k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~ 301 (477)
T 1r6t_A 231 KTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRT 301 (477)
T ss_dssp SEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCC
T ss_pred ceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhcccc
Confidence 999999999974 555554 5667788888777664 367899999999999999999
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCC-CCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg-~~KMSKS 287 (287)
+++|+||||.||++|++++||+|+||| |++|..+++++ |||| || ++|||||
T Consensus 302 ~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~pl---l~gL-dG~~~KMSKS 353 (477)
T 1r6t_A 302 DIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHSTF---FPAL-QGAQTKMSAS 353 (477)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEECC---CEET-TEEEEECCTT
T ss_pred CCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeeccc---ccCC-CCCccccCCC
Confidence 578999999999999999999999998 56898887776 9999 56 3699998
No 32
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=1.8e-44 Score=348.54 Aligned_cols=198 Identities=17% Similarity=0.159 Sum_probs=160.6
Q ss_pred CCCceEEEeecCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEecceeecC-C---------CCHHHHHHHHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYL 143 (287)
Q Consensus 76 ~~~~~iytGi~PTG~-lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~-~---------~d~~~i~~~~~~~i~~~l 143 (287)
++++++|+||+|||+ ||||||++ +.+|++||+ ||+++|+|||+||+|+ | .+++++++|++++.++++
T Consensus 62 ~~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~ 140 (392)
T 1y42_X 62 TRRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLK 140 (392)
T ss_dssp HCCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHH
Confidence 347899999999999 99999996 679999999 8999999999999998 4 267889999999988888
Q ss_pred HcC-----------CC---CCceEEEEccch-hhhhHHHHH--HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchH
Q 023084 144 ACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPV 206 (287)
Q Consensus 144 A~G-----------iD---p~kt~i~~qS~~-~~~~el~w~--L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPv 206 (287)
++| +| |+++.||.||+| +++..+.|+ +++.++++++.+..+||.+... .+++++|+|+||+
T Consensus 141 a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPl 218 (392)
T 1y42_X 141 KLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPI 218 (392)
T ss_dssp HHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHH
T ss_pred HHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHH
Confidence 765 45 789999999997 677888888 8889998876555555543221 3678999999999
Q ss_pred HHhhhhhhc----CCCEEEeeccchHHHHHHHHHHHHHhhhhCC--c---cccccCCCCCcccCCCceecCCCCcccccC
Q 023084 207 LMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSL 277 (287)
Q Consensus 207 LQaADIl~~----~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~--~---~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL 277 (287)
||||||+++ ++|+||||.||++|++++||+|+|||+.|+. + +.+++| +.+|..+.+|+ ||||
T Consensus 219 LQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~pl---l~~l 289 (392)
T 1y42_X 219 MQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTVPL---LTDS 289 (392)
T ss_dssp HHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEECCC---CBCT
T ss_pred HHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccccc---CcCC
Confidence 999999987 6999999999999999999999999987731 0 112222 34566676676 9999
Q ss_pred CCCCCCCCCC
Q 023084 278 TDGLSKVLTI 287 (287)
Q Consensus 278 ~dg~~KMSKS 287 (287)
|| +|||||
T Consensus 290 -dG-~KMSKS 297 (392)
T 1y42_X 290 -SG-AKFGKS 297 (392)
T ss_dssp -TC-CBTTBC
T ss_pred -ch-hhccCC
Confidence 88 599998
No 33
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=1.7e-44 Score=353.43 Aligned_cols=181 Identities=22% Similarity=0.320 Sum_probs=157.2
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecCC--CCHHHHHHHHHHHHHHHHHcCCCC
Q 023084 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDN 149 (287)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~~--~d~~~i~~~~~~~i~~~lA~GiDp 149 (287)
++++++|+||+|| |.||||||++++ .+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDp 166 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDP 166 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCG
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4688999999999 889999999987 555 898 67789999999999863 699999999999999999999999
Q ss_pred CceEEEEccchhh---hhHHHHHHhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCC---------
Q 023084 150 SKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS--------- 217 (287)
Q Consensus 150 ~kt~i~~qS~~~~---~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~a--------- 217 (287)
+|+.||+||+|++ +.++.|.+++.+|++++.+...| .+++++|+|+||+||||||+++..
T Consensus 167 ekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f--------~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp 238 (451)
T 3foc_A 167 DKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF--------SNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVP 238 (451)
T ss_dssp GGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC--------CSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCB
T ss_pred CceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhccc--------CCCCchHHHhhHHHHHHHHHHhhcCCCCccccc
Confidence 9999999999964 67888889989998887776543 257899999999999999984433
Q ss_pred ---------------------------------C-----------------EEEeeccchHHHHHHHHHHHHHhhhhCCc
Q 023084 218 ---------------------------------D-----------------FVPVGEDQKQHLELTRELAERVNYLYGGR 247 (287)
Q Consensus 218 ---------------------------------d-----------------lvpvG~DQ~~hi~LaRdla~r~n~~~g~~ 247 (287)
| +||||+||++|+|++||+|++||
T Consensus 239 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------ 312 (451)
T 3foc_A 239 LPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------ 312 (451)
T ss_dssp CC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT------
T ss_pred cccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC------
Confidence 2 99999999999999999999998
Q ss_pred cccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 248 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 248 ~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+++|.++++++ ||||+++++|||||
T Consensus 313 ------------~~~p~~~~~~~---l~gLdG~~~KMSKS 337 (451)
T 3foc_A 313 ------------HPKNAYLLGKF---LPGLQGSGTKMSAS 337 (451)
T ss_dssp ------------SCCCEEEEECC---CCBTTBTTCCCCTT
T ss_pred ------------CCCCeeecCCc---ccCCCCCCCccCCC
Confidence 56788877665 99995445799998
No 34
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=1.9e-44 Score=348.62 Aligned_cols=180 Identities=18% Similarity=0.262 Sum_probs=149.1
Q ss_pred CCCceEEEeecCCC-cchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 023084 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (287)
Q Consensus 76 ~~~~~iytGi~PTG-~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~-~~d~~~i~~~~~~~i~~~lA~GiDp~ 150 (287)
++++++|+|++||| .||||||++++ .+| ||+ ++.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 56899999999999 69999999984 455 998 6778889999987766 67999999999999999999999999
Q ss_pred ceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhh--------hhhhcC----C
Q 023084 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (287)
Q Consensus 151 kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaA--------DIl~~~----a 217 (287)
|+.||.||+|.+ . | ...+.+|.|+.+++++.++.+ .+++++|+|+||+|||| ||+.++ +
T Consensus 154 kt~i~~ns~~~~---~-~----~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG---C-M----YRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT---T-S----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH---H-H----HHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999975 1 1 133567889999999988775 46799999999999999 566788 9
Q ss_pred CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI 287 (287)
Q Consensus 218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS 287 (287)
|+||||.||++|++++||+|+||| +++|..+.+++ |||| ||. +|||||
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS 274 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHSKF---FPGL-SGPKGKMSSS 274 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEECC---CCCC-----------
T ss_pred eEEEeccchHHHHHHHHHHHHHcC------------------CCCceeecccc---ccCC-CCCcccCCCC
Confidence 999999999999999999999998 46788887776 9999 564 799998
No 35
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=3.2e-44 Score=346.75 Aligned_cols=180 Identities=19% Similarity=0.290 Sum_probs=145.2
Q ss_pred CCCceEEEeecCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEecceeecC--CCCHHHHHHHHHHHHHHHHHcCCCC
Q 023084 76 SVKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDN 149 (287)
Q Consensus 76 ~~~~~iytGi~PT-G~lHLGh~vg~i-~~~~~LQ~--g~~~~ilIaD~hA~t~--~~d~~~i~~~~~~~i~~~lA~GiDp 149 (287)
++++++|+|++|| |.||||||++++ .+| ||+ ++.++|+|||+|+.+. +.+++++++++++++++|+|+|+||
T Consensus 72 g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp 149 (393)
T 3hv0_A 72 GELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDP 149 (393)
T ss_dssp TCCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 4578999999999 689999999987 455 998 5678999999999654 4699999999999999999999999
Q ss_pred CceEEEEccchhhhhHHHHHHhccCCHHHHhchhcHHHHHhhhC-CCCccchhhhchHHHhhhhhh-------c-C---C
Q 023084 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---S 217 (287)
Q Consensus 150 ~kt~i~~qS~~~~~~el~w~L~~~~t~~~L~R~~~~k~~~~~~~-~~~i~~g~~~YPvLQaADIl~-------~-~---a 217 (287)
+|+.||+||+|.+. + ..++.+|.|+.+++++.++.+ .+++++|+|+||+||||||+. + + +
T Consensus 150 ~kt~i~~ns~~~~~---~-----~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~ 221 (393)
T 3hv0_A 150 ELTFIFTNLEYIAE---L-----YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIH 221 (393)
T ss_dssp TTEEEEEHHHHHHH---H-----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCC
T ss_pred cceEEEECCHHHHH---H-----HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCc
Confidence 99999999999641 1 223446778888888877765 467999999999999999963 2 3 4
Q ss_pred CEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCC-CCCCCC
Q 023084 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKVLTI 287 (287)
Q Consensus 218 dlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~-~KMSKS 287 (287)
|+||||.||++|++++||+|+||| +++|..+++++ |||| ||. +|||||
T Consensus 222 ~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~~~---l~gL-dG~~~KMSKS 270 (393)
T 3hv0_A 222 CLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHSIF---LPSL-QGSQTKMSAS 270 (393)
T ss_dssp EEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEECC---CCC------------
T ss_pred eecccccchHHHHHHHHHHHHHcC------------------CCCceeeccCc---ccCC-CCCCcCCCCC
Confidence 789999999999999999999998 57888887776 9999 564 799998
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.5e-34 Score=293.21 Aligned_cols=179 Identities=12% Similarity=0.097 Sum_probs=145.7
Q ss_pred CCCCCceEEEeecCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEecceeecC-C--CCHHHHHHHHHHHHHHHHHcCC
Q 023084 74 SSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGI 147 (287)
Q Consensus 74 ~~~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ-~--g~~~~ilIaD~hA~t~-~--~d~~~i~~~~~~~i~~~lA~Gi 147 (287)
.-..+..|+++- |||++||||++++++.+.++| . |++++|+||||||+++ + .+++++++++.+++++|+|+|+
T Consensus 378 ~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~ 456 (690)
T 3p0j_A 378 APAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGL 456 (690)
T ss_dssp CCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 334566788888 999999999999875477764 4 8899999999999999 4 5899999999999999999999
Q ss_pred CCCceEEEEccchhhh-hHHHHH----HhccCCHHHHhchhcHHHHHhhhCCCCccchhhhchHHHhhhhhhcCCCEEEe
Q 023084 148 DNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (287)
Q Consensus 148 Dp~kt~i~~qS~~~~~-~el~w~----L~~~~t~~~L~R~~~~k~~~~~~~~~~i~~g~~~YPvLQaADIl~~~adlvpv 222 (287)
|+ +++|++||+|... .+++|. ++..+|++|+.+.. +.+++++|+|+||+||+|||+.+++|++||
T Consensus 457 d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~g 526 (690)
T 3p0j_A 457 PS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVIS 526 (690)
T ss_dssp CT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred Cc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEec
Confidence 97 7999999998532 245664 67788888776543 237789999999999999999999999999
Q ss_pred eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCC
Q 023084 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLT 286 (287)
Q Consensus 223 G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSK 286 (287)
|+||++|++|+||++++++ +|..+++++ +|+|+++.+||||
T Consensus 527 G~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~~~---~P~L~gp~~~~~~ 567 (690)
T 3p0j_A 527 TSLDGHINAFAREYTKERI--------------------DCVQTLEGR---IPALHRPGAAPAV 567 (690)
T ss_dssp CSTTTTTTHHHHHHTTTCS--------------------EEEECCCCS---SCCSSCCCC----
T ss_pred ccccHHHHHHHHHHHHhcc--------------------Ccccccccc---cccCCCcccccCC
Confidence 9999999999999999853 355566665 9999655545444
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.44 E-value=5.5e-14 Score=131.17 Aligned_cols=172 Identities=15% Similarity=0.172 Sum_probs=106.3
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-h
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~-~ 163 (287)
.|||.+||||+.+++.+|...+. +.++++-|.|. + +.....+..+.+.+++.++||+++.. +++||+..+ +
T Consensus 13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D--~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~y 85 (298)
T 1nzj_A 13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----D--PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDAY 85 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----C--GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----C--chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHHH
Confidence 56699999999999999987776 55666678885 2 22345668889999999999999974 799999643 2
Q ss_pred hHHHH-------HHhccCCHHHHhchhc-HHHHHhh---hC---------------CCCccchhhhchH-HHhhhhhhcC
Q 023084 164 VELMW-------LLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLYQ 216 (287)
Q Consensus 164 ~el~w-------~L~~~~t~~~L~R~~~-~k~~~~~---~~---------------~~~i~~g~~~YPv-LQaADIl~~~ 216 (287)
.+..- .+.|.+|..++++.-. |....+. .+ -++.-.|.+.++. .+.-|.+.++
T Consensus 86 ~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R 165 (298)
T 1nzj_A 86 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR 165 (298)
T ss_dssp HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEEC
Confidence 22111 1668999999876410 0000000 00 0011223444444 3555666655
Q ss_pred -------------------CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccC
Q 023084 217 -------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 277 (287)
Q Consensus 217 -------------------adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL 277 (287)
.+++.-|.|+..+...-..+.+.++ ++.|...+.++ |.+.
T Consensus 166 ~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~pl---l~~~ 224 (298)
T 1nzj_A 166 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLPL---ALNP 224 (298)
T ss_dssp TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEECB---CCC-
T ss_pred CCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEeee---eECC
Confidence 4455559999988877777778775 45688777776 7787
Q ss_pred CCCCCCCCCC
Q 023084 278 TDGLSKVLTI 287 (287)
Q Consensus 278 ~dg~~KMSKS 287 (287)
+| +||||+
T Consensus 225 -~g-~KLSKR 232 (298)
T 1nzj_A 225 -QG-AKLSKQ 232 (298)
T ss_dssp ----------
T ss_pred -CC-Cccccc
Confidence 77 599996
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.37 E-value=7.1e-13 Score=131.42 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=120.1
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt-------~i~~q 157 (287)
.|||.|||||+..++.+|...+. |.++++-|.|. ++ .....+..+.+.+++.++||+||.. .+|+|
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~Q 87 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYRQ 87 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCeee
Confidence 56799999999999999987777 54444448887 31 2346678889999999999999974 58999
Q ss_pred cchhhhhHHHH--------HHhccCCHHHHhchh---------cHH---------HHHhh--hCCC----------Cc--
Q 023084 158 SHVRAHVELMW--------LLSSATPIGWLNKMI---------QFK---------EKSHK--AGGE----------NV-- 197 (287)
Q Consensus 158 S~~~~~~el~w--------~L~~~~t~~~L~R~~---------~~k---------~~~~~--~~~~----------~i-- 197 (287)
|+..+....+. .+.|.+|-.+|+++- .|. +..+. .|.. .+
T Consensus 88 S~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~~ 167 (498)
T 2ja2_A 88 SQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLAW 167 (498)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEEE
T ss_pred ecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceEE
Confidence 99754322111 167999999986542 011 11010 0100 00
Q ss_pred ---cchhhhchHHHhhhhhhcC-------------------CCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCC
Q 023084 198 ---GVALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (287)
Q Consensus 198 ---~~g~~~YPvLQaADIl~~~-------------------adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~ 255 (287)
=.|.+.|+.-+.-|++.++ .++|.-|.|+..+...-+.+.+.|+. +|. |
T Consensus 168 ~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------g-- 238 (498)
T 2ja2_A 168 NDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------A-- 238 (498)
T ss_dssp EETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------C--
T ss_pred EecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------C--
Confidence 1234555555556666554 55555699999999999999999975 531 1
Q ss_pred CCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 256 ~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+..+.++ |.+. +| +||||+
T Consensus 239 ----~~~P~~~h~pl---il~~-~g-~KLSKR 261 (498)
T 2ja2_A 239 ----ERIPKFAHLPT---VLGE-GT-KKLSKR 261 (498)
T ss_dssp ----CCCCEEEEECC---EECS-SS-SBCCTT
T ss_pred ----CCCCeEEEeee---eECC-CC-Cccccc
Confidence 46788887777 8887 77 599996
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.35 E-value=8.6e-13 Score=129.97 Aligned_cols=173 Identities=17% Similarity=0.140 Sum_probs=118.8
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EEEc
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~-------i~~q 157 (287)
.|||.+||||+..++.+|...+. |.++++-|.|. ++ .....+..+.+.+++.++||+||... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 57799999999999999987766 55566667776 31 13355678889999999999999742 4999
Q ss_pred cchhh-hhHHHHH-------HhccCCHHHHhchh-------------cHHHHHhhh--CC---------C--Cc-----c
Q 023084 158 SHVRA-HVELMWL-------LSSATPIGWLNKMI-------------QFKEKSHKA--GG---------E--NV-----G 198 (287)
Q Consensus 158 S~~~~-~~el~w~-------L~~~~t~~~L~R~~-------------~~k~~~~~~--~~---------~--~i-----~ 198 (287)
|+..+ |.+..-. +.|.+|-.+++++- +.++..++. |. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99643 2221111 66899999886532 222221111 10 0 01 1
Q ss_pred chhhhchHHHhhhhhhcCCCEEEe-------------------eccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 023084 199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (287)
Q Consensus 199 ~g~~~YPvLQaADIl~~~adlvpv-------------------G~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~ 259 (287)
.|.+.+|..+.-|.+.+++|..|. |.|+..+...-..+.+.++
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 244677777777777766555555 9999999999999999886
Q ss_pred cCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 260 FKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 260 f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+..+.++ |.+. +| +||||+
T Consensus 225 ~~~p~~~h~~l---i~~~-~g-~klSKR 247 (468)
T 1j09_A 225 WEAPRFYHMPL---LRNP-DK-TKISKR 247 (468)
T ss_dssp CCCCEEEEECC---CBCT-TS-CBCCTT
T ss_pred CCCCeEEEeee---eeCC-CC-Cccccc
Confidence 45687777666 7787 77 599996
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.28 E-value=6.1e-13 Score=131.62 Aligned_cols=179 Identities=16% Similarity=0.167 Sum_probs=117.2
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-----
Q 023084 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS----- 153 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~----- 153 (287)
+.=..=.|||.+||||+..++.+|...+. +.++++-|.|. ++ .....+..+.+.+++.++||++|...
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG~ 100 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGGD 100 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCSBBTTTBCT
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCCcCCCCCCC
Confidence 44444567799999999999999987776 66666667776 31 23466778889999999999999742
Q ss_pred --EEEccchhh-hhHHHHH-------HhccCCHHHHhchh--cHHHH--HhhhC---------C-CCc-----cchhhhc
Q 023084 154 --VFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI--QFKEK--SHKAG---------G-ENV-----GVALLTY 204 (287)
Q Consensus 154 --i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~--~~k~~--~~~~~---------~-~~i-----~~g~~~Y 204 (287)
.|+||+..+ |.+..-. +.|.+|-.+|+++. .|... ....| + ..+ -.|.+.+
T Consensus 101 ~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~~ 180 (488)
T 3afh_A 101 FGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEF 180 (488)
T ss_dssp TCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEE
T ss_pred CCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEee
Confidence 689999643 2221111 55888877776530 01000 00001 0 000 0222333
Q ss_pred hHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCce
Q 023084 205 PVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP 265 (287)
Q Consensus 205 PvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~ 265 (287)
+.-+.-|.+. .+.++|.-|.|+..+...-..+.+.|+ ++.|+.
T Consensus 181 ~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~f 242 (488)
T 3afh_A 181 DNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPVF 242 (488)
T ss_dssp EGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCEE
T ss_pred cCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCeE
Confidence 3333333333 467777779999999999999999886 567888
Q ss_pred ecCCCCcccccCCCCCCCCCCC
Q 023084 266 LIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 266 l~~~~~~~l~gL~dg~~KMSKS 287 (287)
.+.|+ |.+. +| +||||+
T Consensus 243 ~H~pl---i~~~-~g-~KLSKR 259 (488)
T 3afh_A 243 MHIPL---ILGS-DR-TPLSKR 259 (488)
T ss_dssp EEECC---EECT-TS-SBCCTT
T ss_pred EEEee---eeCC-CC-CcccCc
Confidence 88777 8887 78 599996
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.20 E-value=1.3e-10 Score=115.01 Aligned_cols=173 Identities=17% Similarity=0.178 Sum_probs=115.6
Q ss_pred ecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEccchhh-
Q 023084 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (287)
Q Consensus 85 i~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~~~~- 162 (287)
=.|||.+||||+..++.+|...+. +.++++-|.|. ++ .....+.++.+.+++.++||+++. ..|+||+..+
T Consensus 8 PSPtG~lHiG~artal~n~l~Ar~~~G~filRieDt----D~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~~ 80 (492)
T 2cfo_A 8 PSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDT----DR--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLDL 80 (492)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----SS--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeC----Cc--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHHH
Confidence 357799999999999999977665 65666678887 32 233567888999999999999996 5899999543
Q ss_pred hhHHHHH-------HhccCCHHHHhchhc----------H---------HHHHhh--hC---------CCC---------
Q 023084 163 HVELMWL-------LSSATPIGWLNKMIQ----------F---------KEKSHK--AG---------GEN--------- 196 (287)
Q Consensus 163 ~~el~w~-------L~~~~t~~~L~R~~~----------~---------k~~~~~--~~---------~~~--------- 196 (287)
+.+..-. +.|.+|-.+|+.+.. | .+..+. .| ++.
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v 160 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLV 160 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETT
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecc
Confidence 3222222 568899888765310 1 011000 01 000
Q ss_pred --------ccc---------------hhhhchHHHhhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccC
Q 023084 197 --------VGV---------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (287)
Q Consensus 197 --------i~~---------------g~~~YPvLQaADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g 253 (287)
..+ |..+|=+-=+.|....+.|+|.-|.|+..+-..-..+.+.++
T Consensus 161 ~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg------------ 228 (492)
T 2cfo_A 161 RGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG------------ 228 (492)
T ss_dssp TEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT------------
T ss_pred eeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC------------
Confidence 011 333333333344445567788899999999988888888876
Q ss_pred CCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 254 ~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+..+.++ |.+. +| +||||+
T Consensus 229 ------~~~P~~~H~pl---il~~-~g-~KLSKr 251 (492)
T 2cfo_A 229 ------ATPPNFAHTPL---ILNS-TG-QKLSKR 251 (492)
T ss_dssp ------CCCCEEEEECC---EECS-SS-SBCCTT
T ss_pred ------CCCceEEEeee---EECC-CC-CEeccc
Confidence 45687777787 8887 78 599997
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.19 E-value=1.5e-12 Score=131.42 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=114.6
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt----- 152 (287)
.++=..=.|||.|||||+.+++.+|...+. +.++++-|.|. ++ .....+....+.+++.++||+||..
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 444444677899999999999999977666 66777778884 32 1345667888999999999999974
Q ss_pred --EEEEccchhh-hhHHHHH-------HhccCCHHHHhchh--cHHHH--HhhhC---------C------CCccchhhh
Q 023084 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI--QFKEK--SHKAG---------G------ENVGVALLT 203 (287)
Q Consensus 153 --~i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~--~~k~~--~~~~~---------~------~~i~~g~~~ 203 (287)
..|+||+..+ |.+..-. +.|.+|-.+|++.. .|... ....| + ++.-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 2689999643 2221111 55787776665420 00000 00000 0 001122333
Q ss_pred chHHHhhhhhh-------------------cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCc
Q 023084 204 YPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (287)
Q Consensus 204 YPvLQaADIl~-------------------~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~ 264 (287)
++.-+.-|.+. .+.++|.-|.|+..+...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 33333333333 356677779999999998888888775 45677
Q ss_pred eecCCCCcccccCCCCCCCCCCC
Q 023084 265 PLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 265 ~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
..+.|+ |.+. +| +||||+
T Consensus 346 ~~hlpl---i~~~-~g-~KLSKR 363 (592)
T 3al0_C 346 FMHIPL---ILGS-DR-TPLSKR 363 (592)
T ss_dssp CCEECC---CBCT-TS-SBCCTT
T ss_pred EEEeee---eeCC-CC-Cccccc
Confidence 777676 8887 78 599996
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.85 E-value=8.4e-09 Score=101.84 Aligned_cols=180 Identities=15% Similarity=0.075 Sum_probs=110.5
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt----- 152 (287)
.+....-.|||.|||||+.+++.+|..-+. +...++-|.|. ++ ...+.+..+.+.+++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDt----D~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDT----DL--ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCS----SC--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecC----Cc--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 356777789999999999999988865544 44555445554 21 1335567788889999999999863
Q ss_pred --EEEEccchhh-hhHHHHH-------HhccCCHHHHhchh---------------------cHHHHHh--hhCC-----
Q 023084 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI---------------------QFKEKSH--KAGG----- 194 (287)
Q Consensus 153 --~i~~qS~~~~-~~el~w~-------L~~~~t~~~L~R~~---------------------~~k~~~~--~~~~----- 194 (287)
..|+||+..+ +.+..-. +.|.++-.+++.+- .-.+..+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2578999432 2222111 44666665543221 0000000 0000
Q ss_pred ---C-----------------Cccchhh------hchHHHhhhhh---hcCCCEEEeeccchHHHHHHHHHHHHHhhhhC
Q 023084 195 ---E-----------------NVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (287)
Q Consensus 195 ---~-----------------~i~~g~~------~YPvLQaADIl---~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g 245 (287)
. ...++-+ -||..+-|+++ ..+.+.|..|.||..|...-.-+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 0001100 04444444333 3589999999999999988888888876
Q ss_pred CccccccCCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 246 ~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|...+.++ +.+. +| +||||+
T Consensus 244 --------------~~~p~~~H~pl---il~~-~G-~KLSKR 266 (481)
T 2o5r_A 244 --------------KAPPVFAHVST---ILGP-DG-KKLSKR 266 (481)
T ss_dssp --------------CCCCEEEEECC---EECT-TS-SBCCGG
T ss_pred --------------CCCCeEEEEee---EECC-CC-CcccCc
Confidence 45687777676 6675 77 599995
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.76 E-value=6.5e-08 Score=95.76 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=106.1
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~ 155 (287)
+++.=..=.|||.+||||+..++.+|...+. +.+.++-|-|. |+ ....+.++.+.+++.++||+|+. ..|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~-~~~ 96 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDE-GPY 96 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCC-CCc
Confidence 3444444556699999999999999876665 44555556663 33 34566888999999999999996 479
Q ss_pred Eccchh-hhhHHHHH-------HhccCCHHHHhchhcH--------------HHH----Hhh----------hC-C--CC
Q 023084 156 VQSHVR-AHVELMWL-------LSSATPIGWLNKMIQF--------------KEK----SHK----------AG-G--EN 196 (287)
Q Consensus 156 ~qS~~~-~~~el~w~-------L~~~~t~~~L~R~~~~--------------k~~----~~~----------~~-~--~~ 196 (287)
+||+.. .+.+..-. +.|.+|-.+|+.+-.- ... .+. +. + ..
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 999953 23222211 5688998887643210 000 000 00 0 00
Q ss_pred cc-----chhhh----------------chHHHhh---hhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084 197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (287)
Q Consensus 197 i~-----~g~~~----------------YPvLQaA---DIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~ 252 (287)
+. -|.+. ||..+-| |=...+.++|.=|.|...+--.-..+.+.|+
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG----------- 245 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG----------- 245 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence 00 01111 2222222 2223478999999999888777777777775
Q ss_pred CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+..+.|+ |.+- +| +||||.
T Consensus 246 -------~~~P~f~HlpL---i~~~-~g-~KLSKR 268 (490)
T 4g6z_A 246 -------GEVPVYAHLPT---VLNE-QG-EKMSKR 268 (490)
T ss_dssp -------CCCCEEEEECC---EECT-TS-SBCCTT
T ss_pred -------CCCCeEEEecc---eeCC-CC-CcccCC
Confidence 66788888887 7776 77 699995
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.62 E-value=1.6e-07 Score=93.31 Aligned_cols=173 Identities=19% Similarity=0.161 Sum_probs=109.4
Q ss_pred cCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------EEEc
Q 023084 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (287)
Q Consensus 86 ~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~-------i~~q 157 (287)
.|||.+||||+..++.+|..-+. |.++++-|-|. ++. ....+..+.+.+++.++||++|... .|+|
T Consensus 32 sPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt----D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~Q 105 (512)
T 4gri_A 32 SPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT----DQS--RYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYVQ 105 (512)
T ss_dssp CSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCccc
Confidence 45699999999999989876655 55555556665 321 2234567788899999999998632 4799
Q ss_pred cchhh-h---hHHHHH----HhccCCHHHHhchhc-------------------HHHHHhhh--C---------C--CCc
Q 023084 158 SHVRA-H---VELMWL----LSSATPIGWLNKMIQ-------------------FKEKSHKA--G---------G--ENV 197 (287)
Q Consensus 158 S~~~~-~---~el~w~----L~~~~t~~~L~R~~~-------------------~k~~~~~~--~---------~--~~i 197 (287)
|+..+ | .+.... +.|.+|-.++++... ..++.... + + .++
T Consensus 106 S~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~~ 185 (512)
T 4gri_A 106 SQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGDT 185 (512)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred cchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCCc
Confidence 98543 2 222211 668999888764322 11111100 0 0 000
Q ss_pred -----cchhhh-----------------chHHHhhhh---hhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCcccccc
Q 023084 198 -----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (287)
Q Consensus 198 -----~~g~~~-----------------YPvLQaADI---l~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~ 252 (287)
-.|.+. ||..+=|-+ ...+.++|.-|.|...+--.-.-|.+.|+
T Consensus 186 ~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg----------- 254 (512)
T 4gri_A 186 SFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK----------- 254 (512)
T ss_dssp EEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT-----------
T ss_pred eeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC-----------
Confidence 011111 222222211 22478999999999999988888888886
Q ss_pred CCCCCcccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 253 g~~~~~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|+..|.|+ |.+- +| +|+||.
T Consensus 255 -------~~~P~y~H~pl---i~~~-~g-~kLSKR 277 (512)
T 4gri_A 255 -------WKPPIYCHLPM---VMGN-DG-QKLSKR 277 (512)
T ss_dssp -------CCCCEEEEECC---CBCT-TS-SBCCTT
T ss_pred -------CCCCeEEecch---hccc-cc-cccCcc
Confidence 67898888887 8776 77 599995
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.61 E-value=2.8e-07 Score=92.30 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=98.2
Q ss_pred EEEeec--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 81 iytGi~--PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
+.+=|. |||.+||||+..++.+|...+. +..+++-|-|. |+ ....+.+..+.+++.++|++|+ +.++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~ 167 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI 167 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence 445555 4599999999999888865554 44555557766 33 3344678889999999999997 5899
Q ss_pred ccchh-hhhHHHHH-------HhccCCHHHHhch-----------hcHH-------HHHh--------hhC-C---CCcc
Q 023084 157 QSHVR-AHVELMWL-------LSSATPIGWLNKM-----------IQFK-------EKSH--------KAG-G---ENVG 198 (287)
Q Consensus 157 qS~~~-~~~el~w~-------L~~~~t~~~L~R~-----------~~~k-------~~~~--------~~~-~---~~i~ 198 (287)
||+.. .+.+..-. +.|.++-.++... .+.. ++.. +.. + .+.+
T Consensus 168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence 99963 23222222 4578887766421 1111 1110 000 0 0000
Q ss_pred c----------------hh--hhchHHH---hhhhhhcCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 023084 199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (287)
Q Consensus 199 ~----------------g~--~~YPvLQ---aADIl~~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~ 257 (287)
+ |- ..||..+ +.|....+.|+++.|.|...+-..-.-+...++
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---------------- 311 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---------------- 311 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence 0 00 1355544 445555789999999999988777666677665
Q ss_pred cccCCCceecCCCCcccccCCCCCCCCCCC
Q 023084 258 AIFKVPEPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 258 ~~f~~P~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
++.|...+.+. | .+ +| +|||||
T Consensus 312 --~~~P~y~H~~~---L-~~-~g-~KLSKR 333 (553)
T 3aii_A 312 --WEPPEFIHYGR---L-KM-DD-VALSTS 333 (553)
T ss_dssp --CCCCEEECCCC---B-C---------CH
T ss_pred --CCCCeEEEeeE---E-ec-CC-ceechh
Confidence 45687776665 6 44 67 499996
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.37 E-value=6.3e-07 Score=89.80 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=65.0
Q ss_pred ceEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~-~~i~~~~~~~i~~~lA~GiDp~kt~i~~ 156 (287)
.+.=.+=.|||.+||||+..++.+|...+. +..+++-|-|. |+ ....+....+.+++.++||+++. ..++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 344455667799999999999888865554 55555557776 33 33556788899999999999964 4799
Q ss_pred ccchhh-hhHHHHH-------HhccCCHHHHh
Q 023084 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (287)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~t~~~L~ 180 (287)
||+..+ +.+..-. +.|.++-.+|.
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 998642 3332222 45788877664
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.14 E-value=1.8e-05 Score=82.78 Aligned_cols=94 Identities=13% Similarity=0.056 Sum_probs=65.2
Q ss_pred eEEEeecCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcc
Q 023084 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i~~~~~LQ~-g~~~~ilIaD~hA~t~~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS 158 (287)
+.=.+=.|||.+||||+..++.+|...+. +..+++-|-|. ++ .....+++..+.+++.++||+|+. ..++||
T Consensus 68 ~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~--~R~~~e~~~~IledL~wLGl~wde-~~~~qS 140 (851)
T 2hz7_A 68 VTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NP--ELARQEYVDSIADDLKWLGLDWGE-HFYYAS 140 (851)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CT--TTCCHHHHHHHHHHHHHHTCCCTT-CEEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCCC-CcccHh
Confidence 33346667799999999999888866555 55556567776 32 134567888999999999999965 589999
Q ss_pred chh-hhhHHHHH-------HhccCCHHHHh
Q 023084 159 HVR-AHVELMWL-------LSSATPIGWLN 180 (287)
Q Consensus 159 ~~~-~~~el~w~-------L~~~~t~~~L~ 180 (287)
+.. .+.+..-. +.|.++-.++.
T Consensus 141 er~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 141 DYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred hhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 963 33222222 55788877664
No 49
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.89 E-value=0.0014 Score=65.91 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=30.2
Q ss_pred ceEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 023084 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (287)
Q Consensus 79 ~~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~ 119 (287)
..-|+|--|+|++||||+.+++ .-+.++.+ |++|++ -|.|+
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 4557788889999999998765 34555555 888865 37776
No 50
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=96.03 E-value=0.011 Score=58.35 Aligned_cols=79 Identities=24% Similarity=0.345 Sum_probs=52.0
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHH---HHhc-cCcE-EEEEecceeecC--CC------------C-----------
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWI---ALQN-SYET-LFFIVDLHAITL--PY------------D----------- 127 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~---~LQ~-g~~~-~ilIaD~hA~t~--~~------------d----------- 127 (287)
..++.+|--|||.+||||...++..++ .+.. |+++ +++-.|+|.... |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 356667999999999999998875532 2223 7776 444456654111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEccc
Q 023084 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (287)
Q Consensus 128 ~~~i~~~~~~~i~~~lA~GiDp~kt~i~~qS~ 159 (287)
.+-.+++...+.+++.++||++| +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11234577788889999999887 358987
No 51
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.94 E-value=0.033 Score=54.61 Aligned_cols=76 Identities=5% Similarity=-0.076 Sum_probs=50.3
Q ss_pred CCCceEEEe-ecCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEecce---eecC-----CCCHH-HHHHHHHHHHHH
Q 023084 76 SVKKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH---AITL-----PYDTQ-QLSKATRETAAI 141 (287)
Q Consensus 76 ~~~~~iytG-i~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilIaD~h---A~t~-----~~d~~-~i~~~~~~~i~~ 141 (287)
.+++.|-|. --++|.+||||.++.+. -+.++++ |++|.+.-+.+| ++.. ..++. -++++...+.++
T Consensus 8 ~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~ 87 (542)
T 3u1f_A 8 EKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKC 87 (542)
T ss_dssp CCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555555 35789999999987552 2344444 899987766555 2222 12453 355677888899
Q ss_pred HHHcCCCCCc
Q 023084 142 YLACGIDNSK 151 (287)
Q Consensus 142 ~lA~GiDp~k 151 (287)
+.++|++.|.
T Consensus 88 ~~~lgi~~D~ 97 (542)
T 3u1f_A 88 FEQMDYSIDY 97 (542)
T ss_dssp HHHHTCCCSE
T ss_pred HHHhCCccCc
Confidence 9999999874
No 52
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=95.29 E-value=0.12 Score=51.33 Aligned_cols=88 Identities=10% Similarity=0.064 Sum_probs=51.6
Q ss_pred CCCCCCCCCceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHH
Q 023084 70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKAT 135 (287)
Q Consensus 70 ~~~~~~~~~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~ 135 (287)
+..++..+++.|-+. .-|+|.+||||....+ .-+.++++ |++|.+. -.|.|..-. ..++++ +.++.
T Consensus 19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~ 98 (564)
T 3kfl_A 19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98 (564)
T ss_dssp -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 344444445444333 3578999999998765 23455555 8998664 445554211 024433 44566
Q ss_pred HHHHHHHHHcCCCCCceEEEEccc
Q 023084 136 RETAAIYLACGIDNSKASVFVQSH 159 (287)
Q Consensus 136 ~~~i~~~lA~GiDp~kt~i~~qS~ 159 (287)
..+.+++.++||+.|. ++.-++
T Consensus 99 ~~~~~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 99 SEFKQCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHHHHHTTCCCSE--EEETTS
T ss_pred HHHHHHHHHcCCCCCc--cccCCC
Confidence 7788899999999883 555554
No 53
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=95.26 E-value=0.14 Score=50.36 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=48.9
Q ss_pred CceEEEeec--CCCcchhhhHHHHHH--HHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHH
Q 023084 78 KKRIVSGVQ--PTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (287)
Q Consensus 78 ~~~iytGi~--PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~ 142 (287)
+....+|-= |||.+||||..+++. -+.++++ |++|.+. -.|.|..-. ..++++ .++....+.+++
T Consensus 25 ~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l 104 (536)
T 4dlp_A 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMA 104 (536)
T ss_dssp CEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 334445544 459999999987652 2444444 8888654 445543211 024433 444567788899
Q ss_pred HHcCCCCCceEEEEccc
Q 023084 143 LACGIDNSKASVFVQSH 159 (287)
Q Consensus 143 lA~GiDp~kt~i~~qS~ 159 (287)
.++|++++ .++.-++
T Consensus 105 ~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 105 EVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHTTCCCS--EEEETTS
T ss_pred HHcCCCCC--cceeCCC
Confidence 99999988 4555554
No 54
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=95.11 E-value=0.093 Score=51.93 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=48.6
Q ss_pred CceEEEe-ecCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecceeecC-------CCCHHH-HHHHHHHHHHHHH
Q 023084 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (287)
Q Consensus 78 ~~~iytG-i~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilI-aD~hA~t~-------~~d~~~-i~~~~~~~i~~~l 143 (287)
+.+|.++ .-|||.+||||....+.. +.++++ |++|.+.. .|.|..-. ..++++ +++....+.+++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3344444 455599999999876632 344433 88886654 44443211 024433 4455677888999
Q ss_pred HcCCCCCceEEEEccc
Q 023084 144 ACGIDNSKASVFVQSH 159 (287)
Q Consensus 144 A~GiDp~kt~i~~qS~ 159 (287)
++|++++. ++.-++
T Consensus 99 ~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 99 GFNISYDN--YHSTHS 112 (560)
T ss_dssp HTTCCCSE--EEESSS
T ss_pred HcCCCCCC--ceeCCC
Confidence 99999884 454443
No 55
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=94.66 E-value=0.17 Score=49.03 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=47.8
Q ss_pred eEEEeecC--CCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC-------CCCHHH-HHHHHHHHHHHHHH
Q 023084 80 RIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLA 144 (287)
Q Consensus 80 ~iytGi~P--TG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~i~~~lA 144 (287)
.+.+|-=| +|.+||||....+.. +.++++ |++|.+..+ |.|..-. ..++.+ .+++...+.+++.+
T Consensus 5 ~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~ 84 (500)
T 2d5b_A 5 FYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDL 84 (500)
T ss_dssp EEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45555555 799999999876522 344443 888866533 3222110 013333 34456678889999
Q ss_pred cCCCCCceEEEEccc
Q 023084 145 CGIDNSKASVFVQSH 159 (287)
Q Consensus 145 ~GiDp~kt~i~~qS~ 159 (287)
+|+++| .++..++
T Consensus 85 lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 85 LGIAYD--DFIRTTE 97 (500)
T ss_dssp TTCCCS--EEEETTS
T ss_pred hCCcCC--CCcccCC
Confidence 999988 4566666
No 56
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=94.23 E-value=0.14 Score=52.49 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=49.3
Q ss_pred CceEEEee-cCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEEecc-eeecC-------CCCHHH-HHHHHHHHHHHH
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIVDL-HAITL-------PYDTQQ-LSKATRETAAIY 142 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg-~i--~~~~~LQ~--g~~~~ilIaD~-hA~t~-------~~d~~~-i~~~~~~~i~~~ 142 (287)
++.|.+++ -|+|.+||||..+ .+ .-+.++++ |++|++..+.+ |..-. ..++.+ +.++...+.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566665 5679999999987 44 33556655 89987776544 32211 024533 445677888899
Q ss_pred HHcCCCCCc
Q 023084 143 LACGIDNSK 151 (287)
Q Consensus 143 lA~GiDp~k 151 (287)
.++|+++|.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999885
No 57
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=93.83 E-value=0.33 Score=47.08 Aligned_cols=79 Identities=14% Similarity=0.209 Sum_probs=49.2
Q ss_pred ceEEEeec--CCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHHH
Q 023084 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (287)
Q Consensus 79 ~~iytGi~--PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~i~~~l 143 (287)
..+.+|-= |||.+||||....+.. +.++++ |++|.+..+ |.|..-. ..++. -++++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34445544 6699999999876522 344443 888766533 3332210 01343 34456778889999
Q ss_pred HcCCCCCceEEEEccc
Q 023084 144 ACGIDNSKASVFVQSH 159 (287)
Q Consensus 144 A~GiDp~kt~i~~qS~ 159 (287)
++|+++| .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 3666776
No 58
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=92.68 E-value=0.4 Score=46.80 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCceE
Q 023084 87 PTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKAS 153 (287)
Q Consensus 87 PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~i~~~lA~GiDp~kt~ 153 (287)
|+|.+||||....+ .-+.++++ |++|.+..+ |.|..-. ..++.+ .+++..++.+++.++|+++| .
T Consensus 23 ~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d--~ 100 (524)
T 2x1l_A 23 PNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD--R 100 (524)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--E
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--C
Confidence 56999999988755 22444444 888866533 3222110 013433 34566778889999999887 4
Q ss_pred EEEccc
Q 023084 154 VFVQSH 159 (287)
Q Consensus 154 i~~qS~ 159 (287)
++..++
T Consensus 101 ~~~t~~ 106 (524)
T 2x1l_A 101 FIRTSD 106 (524)
T ss_dssp EEETTS
T ss_pred CeecCC
Confidence 666666
No 59
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=91.94 E-value=0.38 Score=47.10 Aligned_cols=75 Identities=12% Similarity=0.011 Sum_probs=44.2
Q ss_pred CCceEE-EeecCCCcchhhhHHHHHHH--HHHHhc--cCcEEEE-Eecceee--cC-----CCCHHH-HHHHHHHHHHHH
Q 023084 77 VKKRIV-SGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFF-IVDLHAI--TL-----PYDTQQ-LSKATRETAAIY 142 (287)
Q Consensus 77 ~~~~iy-tGi~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~il-IaD~hA~--t~-----~~d~~~-i~~~~~~~i~~~ 142 (287)
.++.+| +|-=|.|.+||||..+.+.. +.++.+ |++|.+. =.|.|.- +. ..++.+ .+++...+.+++
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~ 103 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDE 103 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555 46666699999998876522 333333 8888655 2233211 00 013333 345667788889
Q ss_pred HHcCCCCCc
Q 023084 143 LACGIDNSK 151 (287)
Q Consensus 143 lA~GiDp~k 151 (287)
.++|+.++.
T Consensus 104 ~~LgI~~d~ 112 (462)
T 3tqo_A 104 KALRVLSPD 112 (462)
T ss_dssp HHHTCCCCS
T ss_pred HHcCCCCCc
Confidence 999998754
No 60
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=91.66 E-value=0.54 Score=45.68 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=47.2
Q ss_pred CCCceEEEeecCC--CcchhhhHHHHHH--HHHHHhc--cCcEEEE--EecceeecC------CCCHHH-HHHHHHHHHH
Q 023084 76 SVKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL------PYDTQQ-LSKATRETAA 140 (287)
Q Consensus 76 ~~~~~iytGi~PT--G~lHLGh~vg~i~--~~~~LQ~--g~~~~il--IaD~hA~t~------~~d~~~-i~~~~~~~i~ 140 (287)
+.+..+|+- .|| |.+||||..+++. -+.++.+ |++|.+. +.|+=.-+. ..++.+ .+++..++.+
T Consensus 20 ~~~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~ 98 (461)
T 1li5_A 20 AGEVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHK 98 (461)
T ss_dssp TTEEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334556553 666 9999999987662 2334433 8888665 344410000 013323 3345667888
Q ss_pred HHHHcCCCCCceEEEEccc
Q 023084 141 IYLACGIDNSKASVFVQSH 159 (287)
Q Consensus 141 ~~lA~GiDp~kt~i~~qS~ 159 (287)
++.++|+.+.. .+...|+
T Consensus 99 ~~~~LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 99 DFDALNILRPD-MEPRATH 116 (461)
T ss_dssp HHHHTTCCCCS-BCCBGGG
T ss_pred HHHHcCCCCCc-ccccccc
Confidence 99999998532 2445665
No 61
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=91.63 E-value=0.77 Score=43.79 Aligned_cols=81 Identities=15% Similarity=0.059 Sum_probs=47.7
Q ss_pred CceE-EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE-EecceeecC-------CCCHHH-HHHHHHHHHHHHH
Q 023084 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (287)
Q Consensus 78 ~~~i-ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il-IaD~hA~t~-------~~d~~~-i~~~~~~~i~~~l 143 (287)
++.+ ++|-=|.|.+||||....+ .-+.++++ |++|.+. -.|.|..-. ..++.+ ..++...+.+++.
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 4444445999999988765 22344444 8988554 455553110 013322 3445677888899
Q ss_pred HcCCC-CCceEEEEccch
Q 023084 144 ACGID-NSKASVFVQSHV 160 (287)
Q Consensus 144 A~GiD-p~kt~i~~qS~~ 160 (287)
++|+. ++ .++..|++
T Consensus 119 ~Lgi~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 119 ALRVLPPH--DYVAATDA 134 (414)
T ss_dssp HTTCCCCS--EEEEGGGC
T ss_pred HcCCCCCc--ceecccch
Confidence 99998 66 34555553
No 62
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=89.68 E-value=1 Score=47.34 Aligned_cols=74 Identities=15% Similarity=0.064 Sum_probs=46.5
Q ss_pred CCceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCHH-HHHHHHHHHHHHH
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIY 142 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~i~~~ 142 (287)
.++++++++ -|||.+||||....+ .-+.++++ |++|.+..+ |.|.+-. ..++. -..+++..+.+++
T Consensus 53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l 132 (880)
T 4arc_A 53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQL 132 (880)
T ss_dssp CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 355777776 667999999988754 22444544 888876544 4443311 01333 2344567788889
Q ss_pred HHcCCCCC
Q 023084 143 LACGIDNS 150 (287)
Q Consensus 143 lA~GiDp~ 150 (287)
.++|+..|
T Consensus 133 ~~LGis~D 140 (880)
T 4arc_A 133 KMLGFGYD 140 (880)
T ss_dssp HHTTCCCC
T ss_pred HHhCCCcC
Confidence 99998666
No 63
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=88.89 E-value=2.5 Score=41.75 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=45.2
Q ss_pred CceEEEeecCC--CcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc---------e--eecCC-----CCHHH-HH
Q 023084 78 KKRIVSGVQPT--GSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL---------H--AITLP-----YDTQQ-LS 132 (287)
Q Consensus 78 ~~~iytGi~PT--G~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~---------h--A~t~~-----~d~~~-i~ 132 (287)
++++|+ ..|| |.+||||..+.+ .-+.++++ |++|.+. |.|. | +++.. .++.+ .+
T Consensus 42 ~v~~Yv-cgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 42 NVKVYA-CGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp CEEEEE-CCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred cceEEe-CCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 456665 3466 999999988755 22333333 8999776 4444 2 22221 24433 45
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q 023084 133 KATRETAAIYLACGIDNSK 151 (287)
Q Consensus 133 ~~~~~~i~~~lA~GiDp~k 151 (287)
+++..+.+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 5677888999999998775
No 64
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=87.60 E-value=0.48 Score=45.94 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=12.5
Q ss_pred cCCCEEEeeccchH
Q 023084 215 YQSDFVPVGEDQKQ 228 (287)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (287)
+.+|+..+|.||..
T Consensus 249 ~p~di~~~G~D~~~ 262 (497)
T 2csx_A 249 WPADLHLVGKDILR 262 (497)
T ss_dssp CSCSCEEEEGGGHH
T ss_pred CCceEEEeecchhH
Confidence 37899999999988
No 65
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=86.67 E-value=0.55 Score=45.39 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=12.6
Q ss_pred cCCCEEEeeccchHH
Q 023084 215 YQSDFVPVGEDQKQH 229 (287)
Q Consensus 215 ~~adlvpvG~DQ~~h 229 (287)
+.+|+..+|.||...
T Consensus 250 ~p~di~~~G~D~~~f 264 (500)
T 2d5b_A 250 WPHAWHLIGKDILKP 264 (500)
T ss_dssp GGGEEEEEEGGGHHH
T ss_pred CCCeEEEEeechhhh
Confidence 357999999999983
No 66
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=86.35 E-value=1.2 Score=46.77 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=42.9
Q ss_pred CceEEEe-ecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEecc-eeec------------C--CCCH------HH-
Q 023084 78 KKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDL-HAIT------------L--PYDT------QQ- 130 (287)
Q Consensus 78 ~~~iytG-i~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIaD~-hA~t------------~--~~d~------~~- 130 (287)
++.+++| --|||.+|+||.+... .-+.+++. |+++.+..+-+ |.+- + +.+. +.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 4566666 3457999999988644 22455555 89987775544 4430 1 1111 12
Q ss_pred ---HHHHHHHHHHHHHHcCCC
Q 023084 131 ---LSKATRETAAIYLACGID 148 (287)
Q Consensus 131 ---i~~~~~~~i~~~lA~GiD 148 (287)
..++...+.+++..+|+.
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s 135 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGAS 135 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 344556677788888963
No 67
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.91 E-value=0.97 Score=44.05 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.6
Q ss_pred cCCCEEEeeccchHH
Q 023084 215 YQSDFVPVGEDQKQH 229 (287)
Q Consensus 215 ~~adlvpvG~DQ~~h 229 (287)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999864
No 68
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=82.88 E-value=0.81 Score=44.68 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.3
Q ss_pred CCCEEEeeccchHHH
Q 023084 216 QSDFVPVGEDQKQHL 230 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi 230 (287)
-+|+...|.||...+
T Consensus 278 p~d~~~~G~D~~~fh 292 (542)
T 3u1f_A 278 PADVHVIGKDILKFH 292 (542)
T ss_dssp SCSEEEEEGGGHHHH
T ss_pred cceEEEecccccccc
Confidence 368999999997754
No 69
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=82.60 E-value=2.2 Score=44.75 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=44.8
Q ss_pred CceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceeecC-------CCCH-HHHHHHHHHHHHHHH
Q 023084 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL 143 (287)
Q Consensus 78 ~~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~i~~~l 143 (287)
++++++|+ -|+|.+||||....+ .-+.++++ |+++.+..+ |.|.+-. ..++ +-..++...+.+++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777773 445999999988754 22444444 888876544 3332210 0133 234456677888899
Q ss_pred HcCCCCC
Q 023084 144 ACGIDNS 150 (287)
Q Consensus 144 A~GiDp~ 150 (287)
++|+..|
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998655
No 70
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=80.97 E-value=2 Score=44.30 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.6
Q ss_pred ceEEEee-cCCCcchhhhHHHHH--HHHHHHhc--cCcEEEEEe-cceee
Q 023084 79 KRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIV-DLHAI 122 (287)
Q Consensus 79 ~~iytGi-~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~ilIa-D~hA~ 122 (287)
+.|.+|. -|+|.+||||.+..+ .-+.++++ |++|.+..+ |.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 4444443 346999999998755 22445554 888876543 44433
No 71
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=80.55 E-value=1 Score=45.42 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=28.2
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~i--lIaD~ 119 (287)
|+|--|+|++||||..+++ ..+.++.+ |++|+. -|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 6788888999999999766 33455544 888855 48884
No 72
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=79.76 E-value=1.1 Score=45.38 Aligned_cols=40 Identities=30% Similarity=0.370 Sum_probs=29.3
Q ss_pred eEEEeecCCCcchhhhHHHHH--HHHHHHhc--cCcEEEE--Eecc
Q 023084 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFF--IVDL 119 (287)
Q Consensus 80 ~iytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~~il--IaD~ 119 (287)
.=|+|--|+|++||||..+++ ..+.++.+ |++|+.. |.||
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 337899999999999998765 33444444 8998664 7887
No 73
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=74.54 E-value=2.9 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=16.3
Q ss_pred hcCCCEEEeeccch---HHHHHHHHHH
Q 023084 214 LYQSDFVPVGEDQK---QHLELTRELA 237 (287)
Q Consensus 214 ~~~adlvpvG~DQ~---~hi~LaRdla 237 (287)
.+-+|+...|.||. .|-.+...++
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~ 572 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVA 572 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHH
T ss_pred CCCceEEEEEecccccHHHHHHHHHHH
Confidence 35689999999997 3444444444
No 74
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=74.17 E-value=1.3 Score=45.81 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=29.9
Q ss_pred CCceEEEee-cCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEEe-ccee
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHA 121 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilIa-D~hA 121 (287)
.++.+++|. -|||.+||||.++.+. -+.+++. |+++.+..+ |-|.
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 356677776 6789999999987542 2444544 888866554 4443
No 75
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=73.91 E-value=3 Score=43.19 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=12.0
Q ss_pred cCCCEEEeeccchH
Q 023084 215 YQSDFVPVGEDQKQ 228 (287)
Q Consensus 215 ~~adlvpvG~DQ~~ 228 (287)
+-+|+..+|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 56899999999974
No 76
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=73.88 E-value=1.9 Score=41.04 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=17.6
Q ss_pred hhhhcCCCEEEeeccchH-HHHHHHHHH
Q 023084 211 DILLYQSDFVPVGEDQKQ-HLELTRELA 237 (287)
Q Consensus 211 DIl~~~adlvpvG~DQ~~-hi~LaRdla 237 (287)
..+-...|+..+|.|+.. |++.-.-..
T Consensus 239 ~~~g~~~di~~~G~D~~~~H~~~~~a~~ 266 (414)
T 3c8z_A 239 TRIGTGLDIQGGGSDLIFPHHEYSAAHA 266 (414)
T ss_dssp HHTCSCEEEEEEEGGGTTTHHHHHHHHH
T ss_pred HhcCCCceEEEeccccccHHHHHHHHHH
Confidence 333335799999999887 665443333
No 77
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=73.72 E-value=2 Score=41.80 Aligned_cols=39 Identities=26% Similarity=0.549 Sum_probs=27.8
Q ss_pred EEeecCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEecce
Q 023084 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLH 120 (287)
Q Consensus 82 ytGi~PTG~lHLGh~vg~i--~~~~~LQ~--g~~~--~ilIaD~h 120 (287)
|+.--|||++|+||...++ ..+.++.+ |++| ..-|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 5677899999999988765 23444444 7876 45688863
No 78
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=73.28 E-value=2 Score=42.52 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=12.9
Q ss_pred cCCCEEEeeccchHHH
Q 023084 215 YQSDFVPVGEDQKQHL 230 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi 230 (287)
+.+|+...|.||...+
T Consensus 293 wp~dv~~~GkDii~FH 308 (564)
T 3kfl_A 293 WPADVHVVGKDILKFH 308 (564)
T ss_dssp CSCSEEEEEGGGHHHH
T ss_pred CccceEEEeecccchH
Confidence 3578999999998843
No 79
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=69.20 E-value=3 Score=40.41 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=13.6
Q ss_pred hhhhcCCCEEEeeccch-HHH
Q 023084 211 DILLYQSDFVPVGEDQK-QHL 230 (287)
Q Consensus 211 DIl~~~adlvpvG~DQ~-~hi 230 (287)
..+--..|+..+|.|+. +|+
T Consensus 215 ~~lg~~~dih~gG~Dl~fpH~ 235 (461)
T 1li5_A 215 KQLGNHFDIHGGGSDLMFPHH 235 (461)
T ss_dssp HHHCSSEEEEECBGGGTTTHH
T ss_pred HHhCCCceEEeccCccCchHH
Confidence 33333678999999986 443
No 80
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=68.90 E-value=4.2 Score=41.88 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.7
Q ss_pred cCCCEEEeeccchH-HHHHH
Q 023084 215 YQSDFVPVGEDQKQ-HLELT 233 (287)
Q Consensus 215 ~~adlvpvG~DQ~~-hi~La 233 (287)
+-+|+..+|.||.. |+...
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~ 621 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFF 621 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHH
T ss_pred CCceEEeecccccccHHHHH
Confidence 46899999999965 55544
No 81
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=68.46 E-value=3.1 Score=40.71 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.2
Q ss_pred CCCEEEeeccchHH
Q 023084 216 QSDFVPVGEDQKQH 229 (287)
Q Consensus 216 ~adlvpvG~DQ~~h 229 (287)
.+|+...|.||...
T Consensus 276 p~dv~~~G~D~~~f 289 (536)
T 4dlp_A 276 PANAHIIGKDISRF 289 (536)
T ss_dssp SCSEEEEEGGGHHH
T ss_pred CcceEEeechHHHH
Confidence 57899999999884
No 82
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=66.75 E-value=3.1 Score=43.54 Aligned_cols=51 Identities=22% Similarity=0.248 Sum_probs=33.2
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHhhhhCCccccccCCCCCcccCCC--ceecCCCCcccccCCCCCCCCCCC
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--EPLIPPAGARVMSLTDGLSKVLTI 287 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P--~~l~~~~~~~l~gL~dg~~KMSKS 287 (287)
+-+|+...|.||... =.+|.++.... ..|. .| ..+.+.+ +.+. +| +|||||
T Consensus 480 ~P~d~~v~G~Dii~~-W~a~~~~~~~~-~~g~---------------~Pfk~v~~hG~---vld~-~G-~KMSKS 532 (862)
T 1gax_A 480 YPGDVLVTGYDILFL-WVSRMEVSGYH-FMGE---------------RPFKTVLLHGL---VLDE-KG-QKMSKS 532 (862)
T ss_dssp CSBSCEEEEGGGTTT-THHHHHHHHHH-HSSS---------------CSBSEEEEECC---EECT-TS-CBCCTT
T ss_pred CCceEEecCcccccc-HHHHHHHHHHH-hcCC---------------CcccEEEEeee---EEcC-CC-CCcccc
Confidence 568999999999864 45777776543 1231 24 3444555 5554 77 599998
No 83
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=65.69 E-value=5.1 Score=42.33 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=14.3
Q ss_pred cCCCEEEeeccchH-HHHHH
Q 023084 215 YQSDFVPVGEDQKQ-HLELT 233 (287)
Q Consensus 215 ~~adlvpvG~DQ~~-hi~La 233 (287)
+-+|+..+|.||.. |+...
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~ 621 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFF 621 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHH
Confidence 56899999999965 44443
No 84
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=65.64 E-value=3.2 Score=40.49 Aligned_cols=33 Identities=36% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHhhhhhhcCCCEEEeeccchH-HHHHHHHHHHHH
Q 023084 206 VLMASDILLYQSDFVPVGEDQKQ-HLELTRELAERV 240 (287)
Q Consensus 206 vLQaADIl~~~adlvpvG~DQ~~-hi~LaRdla~r~ 240 (287)
.-|+...|--.-||.-+|.|..+ |++ +++|...
T Consensus 213 sam~~~~lG~~~dih~gG~Dl~FpHhe--neiaqs~ 246 (462)
T 3tqo_A 213 SAMSSSILGQPFDIHGGGLDLKFPHHE--NEIAQSE 246 (462)
T ss_dssp HHHHHHHHCSSEEEEEEEGGGTTTHHH--HHHHHHH
T ss_pred HHHHHHhcCCCeEEEccccccccHHHH--hHHHHHH
Confidence 34555555557899999999876 554 5666554
No 85
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=64.11 E-value=2.1 Score=41.65 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=19.9
Q ss_pred CCCEE--EeeccchHHHHHHHHHHHHHh
Q 023084 216 QSDFV--PVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 ~adlv--pvG~DQ~~hi~LaRdla~r~n 241 (287)
..|.+ .+|.||..|+.--..+++.++
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG 261 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLG 261 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTT
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcC
Confidence 35644 699999999987777777665
No 86
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=60.25 E-value=3.2 Score=43.71 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=45.7
Q ss_pred CCceEEEee-cCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEe-cceeecC----------CC--CHHH--------
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIV-DLHAITL----------PY--DTQQ-------- 130 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i~~--~~~LQ~--g~~~~ilIa-D~hA~t~----------~~--d~~~-------- 130 (287)
.++.+.+|. -|||.+||||.+..+.+ +.+++. |+++.+..+ |-|.+-. +. ++++
T Consensus 48 ~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~ 127 (917)
T 1ffy_A 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127 (917)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHH
T ss_pred CceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHH
Confidence 356777776 56899999998875422 455555 888866544 5554421 11 2222
Q ss_pred HHHHHHHHHHHHHHcCC--CCCc
Q 023084 131 LSKATRETAAIYLACGI--DNSK 151 (287)
Q Consensus 131 i~~~~~~~i~~~lA~Gi--Dp~k 151 (287)
..+++..+.+++..+|+ |+++
T Consensus 128 ~~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 128 ALEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHHhCeEEccCC
Confidence 22334556677888897 6766
No 87
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=59.42 E-value=4.8 Score=39.53 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.9
Q ss_pred EEEeeccchHHH
Q 023084 219 FVPVGEDQKQHL 230 (287)
Q Consensus 219 lvpvG~DQ~~hi 230 (287)
+..+|.||..++
T Consensus 303 ~~~~G~D~~~fh 314 (560)
T 3h99_A 303 YHFIGKDIVYFL 314 (560)
T ss_dssp EEEEEGGGHHHH
T ss_pred EEEeccccchhH
Confidence 888999999843
No 88
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=57.88 E-value=8.8 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.094 Sum_probs=18.8
Q ss_pred HhhhhhhcCCCEEEeeccch-HHHHHHHHHHH
Q 023084 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAE 238 (287)
Q Consensus 208 QaADIl~~~adlvpvG~DQ~-~hi~LaRdla~ 238 (287)
|+...|--..||..+|.|.. +|++--.-...
T Consensus 245 m~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 245 MNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 34444444679999999975 45554433333
No 89
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=57.82 E-value=4.9 Score=39.32 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=25.0
Q ss_pred hcCCCEEEeeccchH---HHHHHHHHHHHHhhhhCCccccccCCCCCcccCCCceecCCCCcccccCC-CCCCCCCCC
Q 023084 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKVLTI 287 (287)
Q Consensus 214 ~~~adlvpvG~DQ~~---hi~LaRdla~r~n~~~g~~~~~~~g~~~~~~f~~P~~l~~~~~~~l~gL~-dg~~KMSKS 287 (287)
.+..++-++|.|+.. ......+++.. .+| .+.|..++.++ |.. . +| +|||||
T Consensus 228 ~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~~---i~~-~g~g-~KmSKs 283 (523)
T 1irx_A 228 HFGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYEF---VGI-KGQK-GKMSGS 283 (523)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEECC---EEE-SCC--------
T ss_pred HcCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEEE---EEe-CCCC-CCCCCc
Confidence 345556689999888 23344566621 234 34566666665 443 2 35 699997
No 90
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=55.13 E-value=4.1 Score=43.06 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=26.7
Q ss_pred CCceEEEee-cCCCcchhhhHHHHHH--HHHHHhc--cCcEEEEE
Q 023084 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI 116 (287)
Q Consensus 77 ~~~~iytGi-~PTG~lHLGh~vg~i~--~~~~LQ~--g~~~~ilI 116 (287)
.++.++.|. -|||.+|+||.+.... -+.+++. |++|.+..
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~ 78 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPM 78 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCC
Confidence 356777776 3569999999886442 2445555 88886643
No 91
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=51.24 E-value=41 Score=30.98 Aligned_cols=27 Identities=37% Similarity=0.433 Sum_probs=23.6
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++|..-.|..-.|.+.+-|.+.+.+|
T Consensus 151 v~P~~a~FG~Kd~qql~~lr~mv~dl~ 177 (301)
T 3cov_A 151 VRPDRVFFGEKDYQQLVLIRQLVADFN 177 (301)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCeEEECCCcccCHHHHHHHHHHcC
Confidence 378888889999999999999999887
No 92
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=48.40 E-value=12 Score=39.25 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.2
Q ss_pred cCCCEEEeeccc-hHHHHHHHHHHHH
Q 023084 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (287)
Q Consensus 215 ~~adlvpvG~DQ-~~hi~LaRdla~r 239 (287)
+-+|+-.+|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 569999999999 5667666766553
No 93
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=43.37 E-value=15 Score=38.60 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=20.2
Q ss_pred cCCCEEEeeccc-hHHHHHHHHHHHHH
Q 023084 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (287)
Q Consensus 215 ~~adlvpvG~DQ-~~hi~LaRdla~r~ 240 (287)
+-+|+-.+|.|| .-|+..+|-..+-+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 578999999999 56887888665544
No 94
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=36.70 E-value=1.5e+02 Score=26.59 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=57.8
Q ss_pred CceEEEeecCCCcchhhhHHHHHHHHHHHhccC-cEEEEEecceeecC---CC-CHHHHHHHH--------HHHHHHHHH
Q 023084 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL---PY-DTQQLSKAT--------RETAAIYLA 144 (287)
Q Consensus 78 ~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~-~~~ilIaD~hA~t~---~~-d~~~i~~~~--------~~~i~~~lA 144 (287)
...++.|+-|=-+-|=+.++-.+..| .+.++ +|.|+++|.++.-+ .+ ++.+.++.+ +.+...+.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~W--a~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAW--AVREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHH--HHHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999888889988877778 45655 48999999865433 22 343333222 345556667
Q ss_pred cCCCCCceEEEEccch---hhhhHHH
Q 023084 145 CGIDNSKASVFVQSHV---RAHVELM 167 (287)
Q Consensus 145 ~GiDp~kt~i~~qS~~---~~~~el~ 167 (287)
+|++.+ .+..=||+ ++|.++.
T Consensus 107 ~g~~~~--~v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HTCCTT--CEEETTTTTTCHHHHHHH
T ss_pred cCCCcc--cceeHHHhhcCHHHHHHH
Confidence 798877 67777886 3444443
No 95
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=32.54 E-value=22 Score=32.49 Aligned_cols=26 Identities=19% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.+|..-.|..-.|.+.+-|.+.+.++
T Consensus 141 ~p~~~~FG~Kd~qql~~l~~m~~dl~ 166 (283)
T 3ag6_A 141 MPDYAYFGKKDAQQLAIVEQMVKDFN 166 (283)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHTT
T ss_pred cCceEEECCCCccCHHHHHHHHHHcC
Confidence 56777778888888988898888876
No 96
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=29.73 E-value=1.8e+02 Score=22.72 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=27.6
Q ss_pred cEEEEEecceeecC--CCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 023084 111 ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (287)
Q Consensus 111 ~~~ilIaD~hA~t~--~~d~~~i~~~~~~~i~~~lA~GiDp~kt~i~ 155 (287)
...|.|...+.-++ ..+.+.-.+++......+...|++++++.+.
T Consensus 55 ~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~ 101 (148)
T 4erh_A 55 DGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISAR 101 (148)
T ss_dssp TCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 34555544333333 2345566667777777777889999886554
No 97
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=26.41 E-value=2e+02 Score=25.64 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=57.3
Q ss_pred CCCceEEEeecCCCcchhhhHHHHHHHHHHHhccC-cEEEEEecceeecC-C---CCHHHHHHHH--------HHHHHHH
Q 023084 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL-P---YDTQQLSKAT--------RETAAIY 142 (287)
Q Consensus 76 ~~~~~iytGi~PTG~lHLGh~vg~i~~~~~LQ~g~-~~~ilIaD~hA~t~-~---~d~~~i~~~~--------~~~i~~~ 142 (287)
.+...++.||-|=-+-|=+.++-.+..| .+.++ ++-|+++|.+.--+ - .++.+.++.+ +.+...|
T Consensus 27 ~~g~HallGVSpgNsyFs~drl~~li~W--a~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral 104 (247)
T 3oqv_A 27 QRGEHALIGISAGNSYFSQKNTVMLLQW--AGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSL 104 (247)
T ss_dssp -CEEEEEEEEESSCTTCCHHHHHHHHHH--HHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999888889988877778 45655 48999999954322 1 2433333222 3445667
Q ss_pred HHcCCCCCceEEEEccch
Q 023084 143 LACGIDNSKASVFVQSHV 160 (287)
Q Consensus 143 lA~GiDp~kt~i~~qS~~ 160 (287)
..+|.+.+...+..=||+
T Consensus 105 ~~~~~~~~~~rv~~~Sd~ 122 (247)
T 3oqv_A 105 ESVGDHAERFRVRSLSEL 122 (247)
T ss_dssp HHHCTTGGGEEEEEHHHH
T ss_pred HHhCCCccCceeeeHHHh
Confidence 778998888777777876
No 98
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=24.98 E-value=34 Score=31.10 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 216 ~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
++|..-.|..-.+.+.+-|++.+.++
T Consensus 136 ~Pd~~~FG~kd~qq~~~l~~~~~dl~ 161 (276)
T 1v8f_A 136 QPQRAYFGEKDYQQLLVVRRMVRDLG 161 (276)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcCHHHHHHHHHHcC
Confidence 78977778888888999899988876
No 99
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=24.54 E-value=1.4e+02 Score=27.60 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=25.0
Q ss_pred cCCCEEEeeccchHHHHHHHHHHHHHh
Q 023084 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 215 ~~adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
.++|....|.--.|-+.+.|.+.+.+|
T Consensus 160 v~Pd~A~FGeKD~QQl~vIrrmV~DL~ 186 (314)
T 3inn_A 160 VGPDAAYFGEKDFQQLVIIRRMVDDMA 186 (314)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEECccHHHHHHHHHHHHHHcC
Confidence 379999999999999999999999987
No 100
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=21.61 E-value=37 Score=34.09 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=20.1
Q ss_pred CCEEEeeccchHHHHHHHHHHHHHh
Q 023084 217 SDFVPVGEDQKQHLELTRELAERVN 241 (287)
Q Consensus 217 adlvpvG~DQ~~hi~LaRdla~r~n 241 (287)
-.|-.+|.||..|+.--..+++.++
T Consensus 378 ~~IyV~g~~q~~~~~~l~~~l~~lG 402 (629)
T 2zue_A 378 IVINVIGAEQKHPQLAIKYALQLLG 402 (629)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT
T ss_pred cEEEEEeCcHhhHHHHHHHHHHHcC
Confidence 4456789999999988888888776
Done!