RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023084
(287 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 377 bits (971), Expect = e-132
Identities = 112/220 (50%), Positives = 146/220 (66%), Gaps = 13/220 (5%)
Query: 64 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q+ Y+ ++ IVDLHAIT
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAIT 60
Query: 124 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 183
D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T G L++M
Sbjct: 61 ARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMT 120
Query: 184 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243
QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R++A R N L
Sbjct: 121 QFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIASRFNNL 179
Query: 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
YG IFK+PEP IP AGARVMSL D K
Sbjct: 180 YGD------------IFKIPEPFIPKAGARVMSLQDPTKK 207
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 374 bits (962), Expect = e-131
Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 10/211 (4%)
Query: 73 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLS 132
S++ K ++SGVQP+G + +GNYLGA++ W +Q+ Y+ + +VDLHAIT+ D Q L
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALH 60
Query: 133 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 192
+AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M QFK+KS +
Sbjct: 61 EATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSAR- 119
Query: 193 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252
+V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y +
Sbjct: 120 YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQ---- 175
Query: 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
IF +PEP IP ARVMSL D K
Sbjct: 176 -----PIFTIPEPYIPTVNARVMSLQDATKK 201
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 369 bits (950), Expect = e-128
Identities = 108/212 (50%), Positives = 136/212 (64%), Gaps = 14/212 (6%)
Query: 72 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQL 131
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ+ Y + F IVD HAIT+P D +L
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLEL 88
Query: 132 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M QFK+KS
Sbjct: 89 RKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKS-- 146
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N Y
Sbjct: 147 KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYND----- 201
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
IF +PE IP GAR+MSL D L K
Sbjct: 202 -------IFTIPEVKIPKVGARIMSLNDPLKK 226
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 367 bits (944), Expect = e-128
Identities = 106/205 (51%), Positives = 134/205 (65%), Gaps = 14/205 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS AG E V
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS--AGKEAVS 119
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N Y G
Sbjct: 120 AGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRY------------GE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSK 283
+F +PE IP GAR+MSL D K
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKK 192
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 367 bits (944), Expect = e-128
Identities = 81/212 (38%), Positives = 117/212 (55%), Gaps = 17/212 (8%)
Query: 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ + Q L +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNF 62
Query: 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK----- 191
+ LA G+D KA +F+QS + H + +L+ + +G L +M QFK K +
Sbjct: 63 DLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNP 122
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+ +
Sbjct: 123 NGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKKF------- 175
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
++P+ + R+M L D K
Sbjct: 176 -----KLKLRLPQFVQNKDTNRIMDLFDPTKK 202
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 355 bits (913), Expect = e-123
Identities = 80/210 (38%), Positives = 124/210 (59%), Gaps = 17/210 (8%)
Query: 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKAT 135
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D ++L + +
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNS 60
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+K K G
Sbjct: 61 LKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAK--GL 118
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255
+ L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +
Sbjct: 119 SASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW----------- 167
Query: 256 GGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
G IF +PE + A V+ DG +SK
Sbjct: 168 -GEIFTLPEARVNEEVAVVVGT-DGAKMSK 195
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 346 bits (889), Expect = e-120
Identities = 98/209 (46%), Positives = 133/209 (63%), Gaps = 19/209 (9%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY--ETLFFIVDLHAITLPY--DTQQLSKA 134
KR++SG+QP+G IH+GNYLGAIK W+A+ + F IVD HA+T P D L++
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQR 61
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K+ K
Sbjct: 62 TFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--Q 119
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 120 ETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---------- 169
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
G F P+ L+ P RV + DG +K
Sbjct: 170 --GETFPEPQALLNPEAPRVPGI-DGKAK 195
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 324 bits (833), Expect = e-111
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 16/227 (7%)
Query: 59 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVD 118
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ+ E + D
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLAD 62
Query: 119 LHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 177
+ A+T +D +Q+ + A YLA G+D K + VQS V EL + +
Sbjct: 63 VQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVS 122
Query: 178 WLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236
L + K + + G GE V YPV A+DI + + VPVG+DQ LE TRE+
Sbjct: 123 HLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREI 182
Query: 237 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
R N LY + P+ + R+ L DG +K
Sbjct: 183 VRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAK 215
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 307 bits (789), Expect = e-105
Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 19/211 (9%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKAT 135
RI+SG++PTG +H+G+ +GA++NW+ LQ E +F+ D HA+T Y D +L + T
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYT 71
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-G 194
R+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE +
Sbjct: 72 RDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNYK 131
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
+ L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 132 DLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY---------- 181
Query: 255 RGGAIFKVPEPLIPPAGARVMSLTDG--LSK 283
+F PE ++ ++ DG +SK
Sbjct: 182 --DEVFPEPEAILSRV-PKLPGT-DGRKMSK 208
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 230 bits (588), Expect = 7e-71
Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 27/212 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
R G +P+G +H+ + N + E +F++ D A+ + + +++
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRI 99
Query: 134 ATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
R ++ A G+D K ++ + +H + W + + ++ + K
Sbjct: 100 VGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGK 159
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 160 -TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLK------ 212
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
P L + L G +K
Sbjct: 213 -----------PVILSHH---MLAGLKQGQAK 230
Score = 160 bits (407), Expect = 4e-45
Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 51 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNS 109
+R TA A+ + + + + + K++IA
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDFIAAHPE 415
Query: 110 YETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL 166
+ D A+ + + +S A + A+ A G+ +S V + + +
Sbjct: 416 GTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENEVILGNCDD 475
Query: 167 MWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 225
W+ L+ + + GGE + ++ + L+ V
Sbjct: 476 FWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529
Query: 226 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
RE + + R+ +L +
Sbjct: 530 DGHINAFAREYTKERI-----------------------DCVQTLEGRIPALHRPGAA 564
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 217 bits (553), Expect = 8e-69
Identities = 39/219 (17%), Positives = 75/219 (34%), Gaps = 13/219 (5%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAIT---LPYDTQQLSK 133
+ G + +G IHLG L A Q + +T F+ D H+ L D + + +
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQE 92
Query: 134 ATRET-----AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 188
+ G D K + S + + + + L+++++
Sbjct: 93 VALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITI 152
Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 248
+ GE + A L YP++ +DI G DQ++ + E+A+++ Y +
Sbjct: 153 MGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHE 212
Query: 249 WKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSK 283
+KL + P P K
Sbjct: 213 GEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMK 251
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 206 bits (527), Expect = 6e-65
Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 26/212 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAIT---LPYDTQQLSK 133
K G +P+G +H+ L L ++ +F+I D A + D +++ K
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKK 115
Query: 134 ATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHK 191
++ +CG++ S + W L + +N+M + + +
Sbjct: 116 VGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGR 175
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251
+ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 176 SEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI--------- 226
Query: 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
+ + + + L +G K
Sbjct: 227 -----------KKKPVILSHGMLPGLLEGQEK 247
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 203 bits (518), Expect = 7e-64
Identities = 37/217 (17%), Positives = 78/217 (35%), Gaps = 35/217 (16%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA---ITLPYDTQQLSK 133
+G +P+G IH+ L + N + + + +I D A + + D ++ +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRE 99
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKMIQFKEKS 189
R ++ ACGI+ S +++E M ++ + I + + Q ++
Sbjct: 100 LGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRN 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGG 246
+ + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 160 ---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGL---- 212
Query: 247 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283
+ I + +MSL+ K
Sbjct: 213 -----------------KIPISLSHHMLMSLSGPKKK 232
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 184 bits (469), Expect = 5e-56
Identities = 27/172 (15%), Positives = 57/172 (33%), Gaps = 12/172 (6%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYDT--QQLSKA 134
+ +G P+G +H+G+ + W+ + I D + +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRW 132
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+ +A G D K +F S E+ ++ + F E+S
Sbjct: 133 AYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTEQSK---- 188
Query: 195 ENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYG 245
+ ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 189 ----IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT 236
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 130 bits (328), Expect = 3e-35
Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 18/179 (10%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 167
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
E A +ACG D +K F+ S + + I Q K
Sbjct: 168 AVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGI--FGFT 223
Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 224 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 282
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 130 bits (328), Expect = 5e-35
Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D + Q
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 214
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
E A +ACG D +K +F + + + K + F + G
Sbjct: 215 AVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQVKGIFGF 269
Query: 194 GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNY 242
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 270 TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGY 329
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 128 bits (322), Expect = 1e-34
Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 28/210 (13%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITL-PYDTQQLSKA 134
+ +G P+ S+H+G+ + + W+ + + D +Q+
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAM 137
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
T E +A G D +F ++ M+ + + + + G
Sbjct: 138 TTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQVRGCFGF 189
Query: 194 GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTRELAERVN 241
+P + A+ +P DQ + LTR++A R+
Sbjct: 190 AMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG 249
Query: 242 YLYG----GRKWKKLGGRGGAIFKVPEPLI 267
YL + + L G G + +
Sbjct: 250 YLKPAVIHSKFFPGLSGPKGKMSSSSGTAV 279
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 126 bits (317), Expect = 1e-33
Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 25/182 (13%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAITLPYD--TQQLSK 133
+ +G P+ S+HLG+ + + W+ + + D + +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKN 161
Query: 134 ATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQFKEKSHK 191
RE A +A G D +F E + +S + F +
Sbjct: 162 FARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDC- 220
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
+ + + + +P DQ + + R++A+++
Sbjct: 221 -------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKL 273
Query: 241 NY 242
Y
Sbjct: 274 KY 275
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 122 bits (308), Expect = 1e-32
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 26/184 (14%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT--QQLS 132
+ +G P+ S+H+G+ + + LQ++ + + D + ++
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTKY-LQDTFKVPLVIQLTDDEKFIFKSNLTLEETH 132
Query: 133 KATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
E +ACG D +F + + + + + FK+ +
Sbjct: 133 NYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGFKDSCN- 191
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERV 240
V +P + A+ VP DQ + + R++A R+
Sbjct: 192 -------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRL 244
Query: 241 NYLY 244
YL
Sbjct: 245 GYLK 248
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 120 bits (302), Expect = 9e-32
Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 26/207 (12%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY---DTQQLSKA 134
I P + L Y+ LQ+++ I L I + + SK
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-YLQDAFNIQVIIQILDDIKVLNREATINEASKM 140
Query: 135 TRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG 193
+ + LA G + K ++ + + L+ AT + F+ +
Sbjct: 141 SNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEYSDN--- 197
Query: 194 GENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAERVNYLY 244
+ L P +M + + V Q + ++A +N++
Sbjct: 198 -----IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQ 252
Query: 245 ----GGRKWKKLGGRGGAIFKVPEPLI 267
+ L G I
Sbjct: 253 PTVLFHKMVPLLSGVTKFDIPSDHNSI 279
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 117 bits (295), Expect = 1e-30
Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 20/179 (11%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHA-ITLPYDTQQLSKA 134
+ +G P+ ++H+G+ + + ++ + I D + +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAY 160
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG- 193
RE + G D +F H E L ++K I E G
Sbjct: 161 GRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNEAIKVFGF 212
Query: 194 GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAERVNYLY 244
+ + + +P + F VP DQ L R+ A+ +
Sbjct: 213 DMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKK 271
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 86.8 bits (214), Expect = 2e-19
Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 15/194 (7%)
Query: 78 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLPYDT-QQLSK 133
I +G P+ G++HLG+ L I Y + D + + ++
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDS 150
Query: 134 ATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQFKEKSH 190
TRE +ACG D K +F+ S ++ L+ PI L F ++
Sbjct: 151 YTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFSNDAN 210
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 250
V +P + D +P + A+ V+ +K
Sbjct: 211 --------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTP 262
Query: 251 KLGGRGGAIFKVPE 264
K + V E
Sbjct: 263 KKDAVLSPVHVVEE 276
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 65.6 bits (160), Expect = 2e-12
Identities = 33/173 (19%), Positives = 56/173 (32%), Gaps = 15/173 (8%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA----ITLPYDTQQLSKA 134
++ G PTG H G ++ K + E + DLHA + P +
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKL-ADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAK 99
Query: 135 TRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKS 189
E + + + K V S + ++ LS+ + K
Sbjct: 100 YYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQ 159
Query: 190 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
N ++ L YP++ A D D G DQ++ L E + Y
Sbjct: 160 ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGY 208
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 54.4 bits (131), Expect = 1e-08
Identities = 32/167 (19%), Positives = 63/167 (37%), Gaps = 12/167 (7%)
Query: 84 GVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHA-ITLPY--DTQQLSKATRET 138
G +P+G H+G + K + L + + HA I D + A R
Sbjct: 41 GYEPSGVAHIGWLVWMYK--VKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIV 98
Query: 139 AAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
+ A G+ + + + L+ ++ + + + + + +A
Sbjct: 99 RRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR--RAEEA 156
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 157 EVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGR 203
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 53.8 bits (130), Expect = 2e-08
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKATRE 137
R G +P+G IHLG+ + K + LQ + +E + + D+HA + +++++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK-LMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADY 92
Query: 138 TAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
+++A G+D S+A + S R +V + ++ T + + + +
Sbjct: 93 NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRR----K 148
Query: 195 ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 149 EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY 196
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 51.5 bits (124), Expect = 9e-08
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 17/169 (10%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHA-ITLPYDTQQLSKAT 135
+K G +P+G IHLG+YL K I LQN+ ++ + + DL A + + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK-MIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSK--ASVFVQSHVRAHVELMWLLSSATPIGWLNKMI---QFKEKSH 190
++ A G+ S F + L T L + + +
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTL-NVYRLALKTT----LKRARRSMELIARE- 140
Query: 191 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239
EN VA + YP++ + D G +Q++ L REL +
Sbjct: 141 ---DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLPK 186
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 51.3 bits (123), Expect = 1e-07
Identities = 36/174 (20%), Positives = 61/174 (35%), Gaps = 17/174 (9%)
Query: 80 RIVSGVQPTGSIHLGNYLGAIKNWIA-LQNS-YETLFFIVDLHAI----TLPYDTQQLSK 133
+I G TG H+ ++ K IA + E DLHA P++ +L
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK--IADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 94
Query: 134 ATRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEK 188
+ E A+ + G+ K + + + ++ LSS K K
Sbjct: 95 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 154
Query: 189 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 155 Q----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.26
Identities = 45/330 (13%), Positives = 83/330 (25%), Gaps = 165/330 (50%)
Query: 6 LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQN-RNLATHNG----------- 53
L+H+++ + G TPG +R + H+
Sbjct: 246 LAHYVVT------------AKLLG-------FTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 54 -------------------CGFRC---YCNVSLSEPTAPVASSSSVKKRI--------VS 83
G RC Y N SL P S++ +S
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP----PSILEDSLENNEGVPSPMLSIS 342
Query: 84 GV---QPTGSIHLGN-YLGAIKN-WIALQNSYETLFFIV-----DLHA------------ 121
+ Q ++ N +L A K I+L N + +V L+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN--LVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 122 ----------------------ITLPYDTQQLSKAT--------RETAAI---YLAC--- 145
+ P+ + L A+ + + +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 146 ----GID--NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------ 193
G D S+ + V + L P+ W E + +
Sbjct: 461 DTFDGSDLRVLSGSI-SERIVDCIIRL--------PVKW--------ETTTQFKATHILD 503
Query: 194 ---GENVGVALLTYP--------VLMASDI 212
G G+ +LT+ V++A +
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 27.3 bits (60), Expect = 7.8
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 18/45 (40%)
Query: 258 AIFKV--PEPLIPP----AG------------ARVMSLTDGLSKV 284
A F+ + LIP AG A VMS+ + V
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,188,043
Number of extensions: 239163
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 32
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)