RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023084
(287 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 180 bits (457), Expect = 2e-55
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 14/206 (6%)
Query: 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138
K I SG+QP+G I +GNY+GA++ ++ LQ+ Y F IVD HAIT+ D +L + R
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRL 61
Query: 139 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 198
AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS + G
Sbjct: 62 AALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSAG 121
Query: 199 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258
LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N R G
Sbjct: 122 --LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK------------RYGE 167
Query: 259 IFKVPEPLIPPAGARVMSLTDGLSKV 284
+F +PE IP GAR+MSL D K+
Sbjct: 168 LFTIPEARIPKVGARIMSLVDPTKKM 193
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 129 bits (325), Expect = 1e-35
Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 18/181 (9%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKN-WIALQNSYETLFFIVDLHAI-TLPYDTQQLSKA 134
+ +G P+ ++H+G+ + I W+ + + + D Q
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGD 133
Query: 135 TRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGG 194
E A +ACG D +K +F + I Q K
Sbjct: 134 AVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKGIFGF--T 189
Query: 195 ENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRELAERVNYL 243
++ + +++P + A+ +P DQ + +TR++A R+ Y
Sbjct: 190 DSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYP 249
Query: 244 Y 244
Sbjct: 250 K 250
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 126 bits (317), Expect = 7e-35
Identities = 29/174 (16%), Positives = 54/174 (31%), Gaps = 7/174 (4%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRE 137
+ +I G TG H+ ++ K L+ E DLHA R
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRV 91
Query: 138 TAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHK 191
+ + G+ K + + E + + + + + + K
Sbjct: 92 SYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVK 151
Query: 192 AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245
E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 152 Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKR 204
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 85.0 bits (209), Expect = 1e-19
Identities = 24/177 (13%), Positives = 54/177 (30%), Gaps = 12/177 (6%)
Query: 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136
+ G PT +HLG+ + K + ++ + I D + + ++
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPL 92
Query: 137 ETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF 185
+ + S + ++ + + + +
Sbjct: 93 TLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLERE 152
Query: 186 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 242
K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 153 DFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQ 209
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 82.4 bits (202), Expect = 9e-19
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 7/179 (3%)
Query: 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKAT 135
+K G +P+G IHLG+YL IK I LQN+ ++ + + DLHA + ++ K
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQNAGFDIIILLADLHAYLNQKGELDEIRKIG 86
Query: 136 RETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGE 195
++ A G+ + + ++ L+ T + + ++ E
Sbjct: 87 DYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL----IAREDE 142
Query: 196 NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254
N VA + YP++ +DI D G +Q++ L REL + L G
Sbjct: 143 NPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDG 201
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 1.0
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 78 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 104
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 27.1 bits (59), Expect = 2.6
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine
synthase, synthetase domain {Escherichia coli [TaxId:
562]}
Length = 297
Score = 26.3 bits (58), Expect = 4.3
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRE-----TAAIYL 143
L N W+ ++ + + + I PY ++++ + T ++L
Sbjct: 13 GARLENKGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHL 72
Query: 144 AC 145
Sbjct: 73 MY 74
>d2o9xa1 a.184.1.1 (A:1-153) Reductase assembly protein AF0173
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 153
Score = 25.7 bits (56), Expect = 4.4
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 105 ALQNSYETLFFIVDLHAITLPY-----DTQQLSKATRETAAIYLACGID 148
ALQ Y +LF PY + KA+ A +Y G++
Sbjct: 46 ALQVEYTSLFISSHPSVPCPPYQSYFEEGSVYGKASLRAAELYSKYGLN 94
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS)
{Thermus thermophilus [TaxId: 274]}
Length = 305
Score = 25.9 bits (56), Expect = 5.3
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 87 PTGSIHLGNYLGAIKNWI 104
PTG H+G A+ N+
Sbjct: 10 PTGDPHVGTAYIALFNYA 27
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS)
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 26.0 bits (56), Expect = 6.5
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 87 PTGSIHLGNYLGAIKNW 103
P G +H+G+ N+
Sbjct: 28 PNGYLHIGHAKSICLNF 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,479
Number of extensions: 44082
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 11
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)