BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023085
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 140
V+ G +YFT S+ Y + G+L+KYDPS+ TTL+ + G
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191
Query: 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196
+S D +V+V E + KYWL+G +KG E + +P P NI DG FW++
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 140
V+ G +YFT S+ Y + G+L+KYDPS+ TTL+ + G
Sbjct: 123 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 182
Query: 141 LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196
+S D +V+V E + KYWL+G +KG E + +P P NI DG FW++
Sbjct: 183 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 236
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLET 173
G+L KYDPS+ TTL+ + G +S D +V+V E + KYWL+G +KG E
Sbjct: 165 GRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEV 224
Query: 174 FAENLPGAPDNINLAPDGTFWIA 196
+ +P P NI DG FW++
Sbjct: 225 LVK-IPN-PGNIKRNADGHFWVS 245
>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130.
pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
Protein Family Pf08450. Northeast Structural Genomics
Consortium Target Drr130
Length = 296
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 42 KEGHLIICDNA-NGLHKVSEDGVE--NFLSYVNGSKLRFANDVVEASDGSLYFT 92
K+GHLI C + L + E G E + G KL NDV A DGSL+F+
Sbjct: 78 KQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS 131
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 34/140 (24%)
Query: 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG----APDNINLAP 189
+ NG L++ + +++ C R+ + E G+ E+ A++ G +P+++ LAP
Sbjct: 69 HHQNGHCLNK-QGHLIAC---SHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAP 124
Query: 190 DGTFWIA--IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI- 246
DG+ W + +D +L G + +A DGT+
Sbjct: 125 DGSLWFSDPTYGIDKPEEGYGGEXELP-------------------GRWVFRLAPDGTLS 165
Query: 247 --IRNLVDPTGQLMSFVTSG 264
IR+ V P G ++F+ SG
Sbjct: 166 APIRDRVKPNG--LAFLPSG 183
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 42 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 95
K+G L +C + G+ +E+G +N + + ND+V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCINDMVFDSKGGFYFTDFR 154
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 156 FRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAI 197
R + L+ + ++ F +P PD+ + D ++A+
Sbjct: 204 NRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 25/168 (14%)
Query: 42 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 95
K+G L +C + G+ +E+G +N + + +D+V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 156 FRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAI 197
R + L+ + ++ F +P PD+ + D ++A+
Sbjct: 204 NRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAM 250
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 122 SSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKY 161
S N +VA+GF FANG+ +S D YV + E + Y
Sbjct: 209 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVY 248
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 25/167 (14%)
Query: 42 KEGHLIIC-----DNANGLHKVSEDGVENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSS 95
K+G L +C + G+ +E+G +N + + +D V S G YFT
Sbjct: 96 KDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDXVFDSKGGFYFTDFR 154
Query: 96 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155
P G + P T + ANG+ALS DE + V E+
Sbjct: 155 G-----------YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTA 203
Query: 156 FRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIA 196
R + L+ + ++ F +P PD+ + D ++A
Sbjct: 204 NRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA 249
>pdb|3DR2|A Chain A, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
pdb|3DR2|B Chain B, Structural And Functional Analyses Of Xc5397 From
Xanthomonas Campestris: A Gluconolactonase Important In
Glucose Secondary Metabolic Pathways
Length = 305
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 13 DGWIKRLQDGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDGVENFL-SY 69
DG + L D T + N +D+Q L+ C++ + + DG + L
Sbjct: 75 DGTVDVLLDATAFTNGNAVDAQQ----------RLVHCEHGRRAITRSDADGQAHLLVGR 124
Query: 70 VNGSKLRFANDVVEASDGSLYFTVSS-SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128
G +L ND++ A DG+++FT P + C E H + + P +
Sbjct: 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA-HHSVYRLPPDGSPLQR 183
Query: 129 VADGFYFANGVALSRDEDYVVVCES 153
+AD NG+A S DE + V ++
Sbjct: 184 MAD-LDHPNGLAFSPDEQTLYVSQT 207
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 70 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 122
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 64 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 123
Query: 123 SNITTLVADGFYF 135
+N T + F
Sbjct: 124 ANKTVALGSNVEF 136
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 70 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 122
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 122
Query: 123 SNITTLVADGFYF 135
+N T + F
Sbjct: 123 ANKTVALGSNVEF 135
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 70 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 122
+ G K+R+A D V SD Y + ++Y + H Y LD++E PH +L+
Sbjct: 63 IGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLP 122
Query: 123 SNITTLVADGFYF 135
+N T + F
Sbjct: 123 ANKTVALGSNVEF 135
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 11/67 (16%)
Query: 218 LAAYPKLFSQFI-TLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYV 273
+ +Y +LFS+ I TL +H+AE G +I + DP+ M FVTS + H++
Sbjct: 150 VKSYARLFSKSIETL-----RVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFS 202
Query: 274 ISLTSNF 280
+++ S F
Sbjct: 203 MNMKSRF 209
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 144 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F NG+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 218 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 315 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 368
Query: 275 SLTSNF 280
++ S F
Sbjct: 369 NMKSRF 374
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 218 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 335 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 388
Query: 275 SLTSNF 280
++ S F
Sbjct: 389 NMKSRF 394
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 130
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 138
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 72 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 129
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 80 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 137
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 218 LAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274
+ +Y +LFS+ I +H+AE G +I + DP+ M FVTS + H++ +
Sbjct: 317 VKSYARLFSKSIE----TLRVHLAEKGDGAELIWDKDDPSA--MDFVTSAANLRMHIFSM 370
Query: 275 SLTSNF 280
++ S F
Sbjct: 371 NMKSRF 376
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 82 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 141
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F +G+A+ D ++V E+ +
Sbjct: 142 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPDGIAVRHMNDGRPYQLIVAETPTKKL 198
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 199 WSYDIKGPAKIENKKVWGHIPG 220
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEF 130
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 45 HLIICDNANGLHKVSEDGVENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102
L + D GL V DG ++ + G +++ ND +G+L+ T + + P +
Sbjct: 84 QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD 143
Query: 103 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED----YVVVCESWKFRC 158
Y + E G + + + V F F +G+A+ D ++V E+ +
Sbjct: 144 YTRSMQEK--FGSIYCFTTDGQMIQ-VDTAFQFPDGIAVRHMNDGRPYQLIVAETPTKKL 200
Query: 159 RKYWLKGERKGKLETFAENLPG 180
Y +KG K + + ++PG
Sbjct: 201 WSYDIKGPAKIENKKVWGHIPG 222
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 80 DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 135
+ V SD Y V ++Y + H Y LD++E PH +L+ +N +T+V F
Sbjct: 73 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEF 130
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 70 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 122
+ G KLR + V SD Y V +K+ + Y LD+LE PH +L+
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 123 SNITTLVADGFYF 135
+N T ++ F
Sbjct: 122 ANQTAVLGSDVEF 134
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 70 VNGSKLRFAN-----DVVEASDGSLYFTVSSSKY--LPHEYCLDILEGKPHGQLLKYDPS 122
+ G KLR + V SD Y V +K+ + Y LD+LE PH +L+
Sbjct: 170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 229
Query: 123 SNITTLVADGFYF 135
+N T ++ F
Sbjct: 230 ANQTAVLGSDVEF 242
>pdb|3SJN|A Chain A, Crystal Structure Of Enolase Spea_3858 (Target Efi-500646)
From Shewanella Pealeana With Magnesium Bound
pdb|3SJN|B Chain B, Crystal Structure Of Enolase Spea_3858 (Target Efi-500646)
From Shewanella Pealeana With Magnesium Bound
Length = 374
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 208 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV 267
+N ++LI H FS I L H + E GT++ + S V + LQ
Sbjct: 294 MNGTQLIPHG-------FSTGILLHASVHFLAACEQGTLMEFSQSSSPLFTSLVKNQLQF 346
Query: 268 DNHLYVIS 275
DN +S
Sbjct: 347 DNGFVAVS 354
>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis, Using X-Rays From The
Compact L Source
Length = 142
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 211
GK+ +L G P +N P G W+ I++D+ + L S+
Sbjct: 83 SGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESA 126
>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis
Length = 155
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 168 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS 211
GK+ +L G P +N P G W+ I++D+ + L S+
Sbjct: 96 SGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESA 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,323,683
Number of Sequences: 62578
Number of extensions: 400074
Number of successful extensions: 958
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 56
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)