Query 023085
Match_columns 287
No_of_seqs 129 out of 1596
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 4.9E-32 1.1E-36 225.5 26.1 256 30-286 113-375 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 1.8E-25 3.9E-30 185.0 27.3 222 3-276 10-245 (246)
3 COG3386 Gluconolactonase [Carb 99.9 9.8E-24 2.1E-28 177.2 28.8 230 4-279 36-278 (307)
4 COG4257 Vgb Streptogramin lyas 99.9 6.8E-20 1.5E-24 145.7 21.1 224 2-285 70-303 (353)
5 PLN02919 haloacid dehalogenase 99.8 5.6E-16 1.2E-20 150.5 30.3 232 4-287 579-888 (1057)
6 COG4257 Vgb Streptogramin lyas 99.7 1.2E-14 2.5E-19 116.2 20.6 221 1-285 111-345 (353)
7 PF08450 SGL: SMP-30/Gluconola 99.6 1.1E-12 2.3E-17 108.6 19.9 183 37-286 4-212 (246)
8 PF03088 Str_synth: Strictosid 99.5 2.6E-14 5.6E-19 96.9 7.9 88 79-166 1-89 (89)
9 KOG4499 Ca2+-binding protein R 99.5 2.5E-11 5.5E-16 95.1 20.9 154 76-276 109-274 (310)
10 PLN02919 haloacid dehalogenase 99.5 3.1E-11 6.7E-16 117.8 25.7 203 33-287 569-833 (1057)
11 PF10282 Lactonase: Lactonase, 99.5 3.1E-10 6.8E-15 98.5 29.4 229 6-287 1-275 (345)
12 PF10282 Lactonase: Lactonase, 99.5 2E-10 4.3E-15 99.8 27.5 232 2-287 45-322 (345)
13 COG3292 Predicted periplasmic 99.4 3.3E-12 7.2E-17 111.4 15.0 215 1-278 172-439 (671)
14 PRK11028 6-phosphogluconolacto 99.4 1.3E-09 2.8E-14 94.2 27.2 231 2-287 43-304 (330)
15 TIGR02604 Piru_Ver_Nterm putat 99.4 7.9E-10 1.7E-14 96.8 24.8 154 1-158 21-207 (367)
16 PRK11028 6-phosphogluconolacto 99.3 6.8E-09 1.5E-13 89.7 28.4 228 6-286 3-257 (330)
17 COG2706 3-carboxymuconate cycl 99.3 3E-08 6.5E-13 82.5 26.6 234 2-287 48-321 (346)
18 COG2706 3-carboxymuconate cycl 99.2 3.3E-08 7.1E-13 82.4 25.3 232 5-287 3-274 (346)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.3E-07 2.9E-12 79.8 28.1 224 2-287 39-279 (300)
20 COG3292 Predicted periplasmic 99.2 5.5E-10 1.2E-14 97.8 12.4 143 76-278 165-310 (671)
21 TIGR02604 Piru_Ver_Nterm putat 99.1 6.3E-09 1.4E-13 91.1 18.7 140 32-199 14-203 (367)
22 TIGR03866 PQQ_ABC_repeats PQQ- 99.1 3.7E-07 8E-12 77.1 28.8 167 5-198 1-176 (300)
23 PF03022 MRJP: Major royal jel 99.1 3.1E-08 6.7E-13 83.4 21.5 186 37-276 5-254 (287)
24 COG3386 Gluconolactonase [Carb 99.1 1.1E-08 2.5E-13 86.4 17.5 138 1-155 118-277 (307)
25 COG3391 Uncharacterized conser 98.9 2.3E-06 5E-11 75.3 26.2 231 2-286 39-282 (381)
26 PF02239 Cytochrom_D1: Cytochr 98.9 3.6E-07 7.8E-12 79.8 20.4 262 2-286 45-346 (369)
27 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.4E-05 3.1E-10 68.8 27.8 245 5-286 13-329 (352)
28 KOG4659 Uncharacterized conser 98.7 1.1E-05 2.5E-10 77.2 24.8 174 4-200 418-682 (1899)
29 cd00200 WD40 WD40 domain, foun 98.7 5.4E-05 1.2E-09 62.4 25.6 217 3-284 61-288 (289)
30 COG3391 Uncharacterized conser 98.7 3E-05 6.6E-10 68.3 24.4 210 16-286 13-238 (381)
31 PF07995 GSDH: Glucose / Sorbo 98.7 1.2E-05 2.5E-10 69.5 21.1 149 2-155 10-202 (331)
32 PF06977 SdiA-regulated: SdiA- 98.6 2.4E-05 5.1E-10 64.2 21.0 192 37-284 26-247 (248)
33 PF06977 SdiA-regulated: SdiA- 98.6 2.1E-05 4.7E-10 64.5 20.0 178 4-199 33-241 (248)
34 PRK11138 outer membrane biogen 98.6 2.5E-05 5.4E-10 69.2 21.5 216 4-286 120-352 (394)
35 KOG4659 Uncharacterized conser 98.6 1.2E-05 2.7E-10 77.0 19.5 208 33-284 366-619 (1899)
36 KOG1214 Nidogen and related ba 98.6 1.2E-05 2.6E-10 73.9 18.7 216 7-286 993-1225(1289)
37 PRK05137 tolB translocation pr 98.5 0.00023 4.9E-09 64.0 27.0 154 15-193 183-347 (435)
38 PF02239 Cytochrom_D1: Cytochr 98.5 0.00023 5.1E-09 62.3 26.1 170 5-199 5-191 (369)
39 TIGR03300 assembly_YfgL outer 98.5 9.2E-05 2E-09 65.2 23.4 125 112-285 198-336 (377)
40 cd00200 WD40 WD40 domain, foun 98.5 0.00037 8E-09 57.4 26.9 171 3-199 19-198 (289)
41 TIGR03300 assembly_YfgL outer 98.5 0.00014 2.9E-09 64.1 24.3 213 4-286 65-296 (377)
42 PRK04922 tolB translocation pr 98.5 0.00014 3.1E-09 65.3 24.5 196 2-255 212-423 (433)
43 PRK04792 tolB translocation pr 98.5 0.00014 3E-09 65.6 24.0 196 2-255 226-437 (448)
44 TIGR03606 non_repeat_PQQ dehyd 98.4 5.5E-05 1.2E-09 67.2 19.4 175 75-278 29-250 (454)
45 PRK02889 tolB translocation pr 98.4 0.00036 7.7E-09 62.6 24.8 196 2-255 204-415 (427)
46 KOG0291 WD40-repeat-containing 98.4 0.0004 8.7E-09 63.6 24.0 173 2-199 359-541 (893)
47 PF07995 GSDH: Glucose / Sorbo 98.4 1.8E-05 4E-10 68.3 15.3 160 76-279 2-203 (331)
48 PRK03629 tolB translocation pr 98.4 0.001 2.2E-08 59.7 26.9 155 15-194 180-345 (429)
49 PF01731 Arylesterase: Arylest 98.4 2.7E-06 5.8E-11 57.5 7.9 83 80-164 2-84 (86)
50 PF13360 PQQ_2: PQQ-like domai 98.4 0.00064 1.4E-08 55.6 23.5 169 3-198 35-220 (238)
51 PRK11138 outer membrane biogen 98.4 0.00052 1.1E-08 60.9 24.5 214 4-286 160-393 (394)
52 TIGR03606 non_repeat_PQQ dehyd 98.4 0.00041 8.8E-09 61.8 23.3 164 26-200 24-250 (454)
53 PRK03629 tolB translocation pr 98.3 0.00053 1.1E-08 61.5 24.1 157 14-197 223-391 (429)
54 PRK00178 tolB translocation pr 98.3 0.00054 1.2E-08 61.5 24.2 197 2-255 207-418 (430)
55 KOG4499 Ca2+-binding protein R 98.3 4.3E-05 9.3E-10 60.7 14.5 135 1-153 116-274 (310)
56 PF07433 DUF1513: Protein of u 98.3 0.00023 5E-09 59.5 19.2 179 1-199 58-275 (305)
57 PRK05137 tolB translocation pr 98.3 0.00071 1.5E-08 60.9 23.9 170 2-197 210-395 (435)
58 PRK04792 tolB translocation pr 98.3 0.0022 4.7E-08 57.9 26.9 137 37-197 222-368 (448)
59 PRK02889 tolB translocation pr 98.3 0.002 4.4E-08 57.7 26.6 154 15-193 177-341 (427)
60 PRK04922 tolB translocation pr 98.2 0.0015 3.3E-08 58.6 24.5 137 37-197 208-354 (433)
61 PF13360 PQQ_2: PQQ-like domai 98.2 0.0013 2.8E-08 53.7 22.3 207 13-287 2-230 (238)
62 TIGR02800 propeller_TolB tol-p 98.2 0.0024 5.2E-08 57.0 25.4 172 2-199 198-385 (417)
63 PRK04043 tolB translocation pr 98.2 0.0042 9.1E-08 55.5 25.9 152 15-193 170-332 (419)
64 TIGR03118 PEPCTERM_chp_1 conse 98.2 0.0013 2.8E-08 54.6 20.6 225 32-286 23-278 (336)
65 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0018 3.8E-08 56.0 22.3 107 45-166 14-138 (352)
66 PRK04043 tolB translocation pr 98.1 0.0035 7.7E-08 56.0 24.7 195 2-256 196-413 (419)
67 KOG1520 Predicted alkaloid syn 98.1 2.8E-05 6E-10 66.2 10.4 130 76-228 115-270 (376)
68 PF03022 MRJP: Major royal jel 98.1 0.0012 2.6E-08 55.8 20.1 64 135-199 187-255 (287)
69 KOG0289 mRNA splicing factor [ 98.1 0.0031 6.7E-08 54.5 22.1 141 35-198 306-451 (506)
70 PRK01742 tolB translocation pr 98.1 0.002 4.2E-08 57.9 22.1 166 2-198 212-390 (429)
71 TIGR02800 propeller_TolB tol-p 98.1 0.0072 1.6E-07 53.9 26.8 159 15-198 171-340 (417)
72 COG4946 Uncharacterized protei 98.1 0.0033 7.2E-08 55.0 21.6 127 115-277 383-509 (668)
73 KOG0318 WD40 repeat stress pro 98.0 0.0062 1.4E-07 53.9 23.1 169 4-199 331-507 (603)
74 PRK00178 tolB translocation pr 98.0 0.0089 1.9E-07 53.7 25.7 137 37-197 203-349 (430)
75 KOG0266 WD40 repeat-containing 98.0 0.0066 1.4E-07 54.9 23.8 139 37-198 208-354 (456)
76 KOG1214 Nidogen and related ba 98.0 0.00037 8.1E-09 64.5 14.9 141 31-199 1067-1216(1289)
77 KOG1446 Histone H3 (Lys4) meth 97.9 0.0081 1.8E-07 49.8 25.9 226 1-286 22-261 (311)
78 cd00216 PQQ_DH Dehydrogenases 97.9 0.0054 1.2E-07 56.0 21.9 59 4-62 61-130 (488)
79 PF05096 Glu_cyclase_2: Glutam 97.9 0.0059 1.3E-07 50.2 19.7 154 76-286 45-202 (264)
80 PRK01742 tolB translocation pr 97.9 0.015 3.3E-07 52.2 24.3 108 37-164 208-324 (429)
81 cd00216 PQQ_DH Dehydrogenases 97.9 0.019 4.2E-07 52.5 26.1 253 5-286 111-423 (488)
82 COG3204 Uncharacterized protei 97.9 0.0075 1.6E-07 49.9 19.5 180 2-199 94-303 (316)
83 KOG2106 Uncharacterized conser 97.9 0.0099 2.1E-07 52.4 21.2 169 2-199 255-427 (626)
84 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.011 2.4E-07 48.1 19.7 62 4-66 105-172 (354)
85 KOG0318 WD40 repeat stress pro 97.8 0.019 4.2E-07 50.9 24.4 73 76-166 191-267 (603)
86 COG1520 FOG: WD40-like repeat 97.8 0.018 3.9E-07 50.6 22.4 141 2-166 66-219 (370)
87 TIGR03032 conserved hypothetic 97.8 0.018 4E-07 48.3 20.9 125 6-153 19-170 (335)
88 PF05096 Glu_cyclase_2: Glutam 97.7 0.012 2.6E-07 48.5 18.5 140 4-163 99-260 (264)
89 KOG0291 WD40-repeat-containing 97.7 0.025 5.5E-07 52.3 21.8 105 75-199 350-455 (893)
90 PRK02888 nitrous-oxide reducta 97.7 0.0051 1.1E-07 56.5 17.5 87 113-199 295-394 (635)
91 KOG0315 G-protein beta subunit 97.7 0.02 4.3E-07 46.2 21.1 165 12-199 18-187 (311)
92 KOG0278 Serine/threonine kinas 97.7 0.0057 1.2E-07 49.3 15.5 135 7-163 158-296 (334)
93 KOG0279 G protein beta subunit 97.6 0.024 5.2E-07 46.5 24.0 187 37-287 68-262 (315)
94 PF07433 DUF1513: Protein of u 97.6 0.029 6.4E-07 47.2 22.6 207 37-286 9-246 (305)
95 KOG2139 WD40 repeat protein [G 97.6 0.032 6.9E-07 47.4 21.0 209 27-286 190-430 (445)
96 PRK13684 Ycf48-like protein; P 97.6 0.04 8.6E-07 47.8 21.3 216 6-284 101-328 (334)
97 KOG1446 Histone H3 (Lys4) meth 97.6 0.036 7.7E-07 46.1 22.3 141 31-199 14-160 (311)
98 COG4946 Uncharacterized protei 97.5 0.0044 9.5E-08 54.3 14.3 130 6-153 373-508 (668)
99 KOG0286 G-protein beta subunit 97.5 0.035 7.7E-07 45.8 24.1 220 4-283 66-299 (343)
100 TIGR03032 conserved hypothetic 97.5 0.016 3.4E-07 48.7 16.9 148 37-200 107-262 (335)
101 COG2133 Glucose/sorbosone dehy 97.5 0.029 6.2E-07 49.2 19.0 176 75-286 176-396 (399)
102 PF14870 PSII_BNR: Photosynthe 97.5 0.051 1.1E-06 46.1 20.3 169 5-199 72-252 (302)
103 KOG0279 G protein beta subunit 97.5 0.042 9.1E-07 45.1 21.2 171 3-199 73-252 (315)
104 KOG2055 WD40 repeat protein [G 97.5 0.031 6.8E-07 48.8 18.4 221 7-286 273-511 (514)
105 PF03088 Str_synth: Strictosid 97.5 0.00083 1.8E-08 45.7 7.2 84 183-287 1-87 (89)
106 COG3490 Uncharacterized protei 97.4 0.046 1E-06 45.2 18.1 162 21-199 57-245 (366)
107 KOG0266 WD40 repeat-containing 97.4 0.079 1.7E-06 48.0 21.9 140 37-199 164-308 (456)
108 KOG2055 WD40 repeat protein [G 97.4 0.023 4.9E-07 49.7 16.6 171 7-199 228-406 (514)
109 KOG0282 mRNA splicing factor [ 97.4 0.014 3E-07 51.1 15.3 138 4-165 226-373 (503)
110 KOG0316 Conserved WD40 repeat- 97.3 0.058 1.3E-06 43.3 18.0 133 37-197 64-201 (307)
111 PF01436 NHL: NHL repeat; Int 97.3 0.00057 1.2E-08 35.7 3.9 27 134-161 2-28 (28)
112 KOG1274 WD40 repeat protein [G 97.3 0.15 3.4E-06 48.3 21.8 143 1-166 21-170 (933)
113 PRK01029 tolB translocation pr 97.3 0.13 2.8E-06 46.2 25.3 158 15-197 212-389 (428)
114 PTZ00421 coronin; Provisional 97.2 0.17 3.6E-06 46.3 25.6 109 37-165 80-199 (493)
115 PLN00033 photosystem II stabil 97.2 0.14 3E-06 45.4 23.0 222 5-284 147-396 (398)
116 KOG0294 WD40 repeat-containing 97.2 0.099 2.1E-06 43.7 20.4 166 7-199 54-228 (362)
117 PF08662 eIF2A: Eukaryotic tra 97.2 0.057 1.2E-06 42.9 16.4 129 15-165 40-180 (194)
118 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.12 2.6E-06 47.7 20.6 58 4-62 69-140 (527)
119 PF02333 Phytase: Phytase; In 97.2 0.15 3.2E-06 44.6 20.0 178 2-199 65-280 (381)
120 COG3204 Uncharacterized protei 97.1 0.12 2.6E-06 43.0 19.6 185 35-276 88-302 (316)
121 PRK01029 tolB translocation pr 97.1 0.19 4.1E-06 45.2 27.5 133 37-192 189-339 (428)
122 PF13449 Phytase-like: Esteras 97.1 0.047 1E-06 47.1 15.9 111 77-199 86-234 (326)
123 KOG0315 G-protein beta subunit 97.0 0.14 3E-06 41.5 20.9 105 76-199 125-235 (311)
124 KOG0275 Conserved WD40 repeat- 97.0 0.042 9E-07 46.0 13.6 140 1-164 221-378 (508)
125 PLN00181 protein SPA1-RELATED; 96.9 0.44 9.6E-06 46.4 28.9 167 6-199 547-728 (793)
126 COG2133 Glucose/sorbosone dehy 96.9 0.094 2E-06 46.0 16.1 160 37-199 181-386 (399)
127 KOG0263 Transcription initiati 96.9 0.081 1.8E-06 49.1 16.2 146 28-199 489-639 (707)
128 KOG1539 WD repeat protein [Gen 96.9 0.041 8.9E-07 51.5 13.9 138 7-165 463-607 (910)
129 KOG1274 WD40 repeat protein [G 96.8 0.14 3.1E-06 48.6 17.3 138 5-165 67-219 (933)
130 KOG0293 WD40 repeat-containing 96.8 0.18 3.8E-06 43.8 16.5 144 32-199 225-375 (519)
131 KOG0296 Angio-associated migra 96.8 0.29 6.3E-06 41.8 21.2 215 7-286 163-397 (399)
132 PF02333 Phytase: Phytase; In 96.7 0.34 7.4E-06 42.3 19.6 135 115-286 130-289 (381)
133 KOG2106 Uncharacterized conser 96.7 0.4 8.7E-06 42.8 18.6 135 5-165 340-478 (626)
134 PF13449 Phytase-like: Esteras 96.7 0.33 7.1E-06 41.9 17.6 64 135-199 86-167 (326)
135 KOG0639 Transducin-like enhanc 96.6 0.17 3.6E-06 45.1 15.3 111 75-209 465-582 (705)
136 PTZ00420 coronin; Provisional 96.6 0.59 1.3E-05 43.5 20.2 103 76-199 75-187 (568)
137 COG1520 FOG: WD40-like repeat 96.6 0.45 9.8E-06 41.8 23.4 108 3-127 110-222 (370)
138 KOG1273 WD40 repeat protein [G 96.6 0.36 7.9E-06 40.5 19.5 61 2-62 32-97 (405)
139 KOG0282 mRNA splicing factor [ 96.6 0.12 2.5E-06 45.6 14.0 165 11-199 277-452 (503)
140 PLN00033 photosystem II stabil 96.6 0.23 5E-06 44.0 16.2 90 3-92 248-344 (398)
141 PTZ00420 coronin; Provisional 96.6 0.66 1.4E-05 43.1 26.3 111 37-165 79-198 (568)
142 KOG0639 Transducin-like enhanc 96.5 0.093 2E-06 46.6 13.0 167 3-199 475-653 (705)
143 KOG0271 Notchless-like WD40 re 96.4 0.18 4E-06 43.3 14.0 101 75-199 367-471 (480)
144 PF14583 Pectate_lyase22: Olig 96.4 0.58 1.3E-05 40.9 19.4 139 2-143 44-197 (386)
145 PF05787 DUF839: Bacterial pro 96.4 0.061 1.3E-06 49.4 12.0 68 133-200 349-456 (524)
146 smart00135 LY Low-density lipo 96.4 0.016 3.6E-07 33.2 5.5 35 131-165 6-40 (43)
147 PF08662 eIF2A: Eukaryotic tra 96.3 0.4 8.7E-06 38.0 15.0 131 41-199 29-163 (194)
148 KOG0646 WD40 repeat protein [G 96.3 0.42 9.1E-06 42.0 15.7 207 34-286 83-306 (476)
149 PRK13684 Ycf48-like protein; P 96.2 0.7 1.5E-05 40.0 23.1 171 4-199 56-234 (334)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 1 2.2E-05 41.7 21.5 68 43-129 69-145 (527)
151 PF06433 Me-amine-dh_H: Methyl 96.2 0.48 1E-05 40.7 15.4 107 114-255 17-139 (342)
152 COG3211 PhoX Predicted phospha 96.2 0.065 1.4E-06 48.5 10.4 67 134-200 417-520 (616)
153 PF14870 PSII_BNR: Photosynthe 96.1 0.73 1.6E-05 39.2 21.6 169 5-199 28-206 (302)
154 KOG0271 Notchless-like WD40 re 96.1 0.15 3.2E-06 43.9 11.6 132 6-162 338-478 (480)
155 KOG0283 WD40 repeat-containing 96.1 0.64 1.4E-05 43.6 16.7 140 37-200 374-524 (712)
156 KOG0272 U4/U6 small nuclear ri 96.1 0.9 1.9E-05 39.6 16.5 137 37-197 266-406 (459)
157 PF01436 NHL: NHL repeat; Int 96.0 0.033 7.1E-07 28.9 4.9 26 259-284 2-28 (28)
158 COG3823 Glutamine cyclotransfe 95.9 0.18 3.9E-06 39.9 10.7 101 32-152 131-247 (262)
159 KOG0286 G-protein beta subunit 95.9 0.82 1.8E-05 38.1 17.8 162 4-192 156-328 (343)
160 COG3490 Uncharacterized protei 95.9 0.63 1.4E-05 38.8 14.0 150 1-166 121-312 (366)
161 PLN00181 protein SPA1-RELATED; 95.9 2 4.2E-05 42.1 27.5 142 1-165 491-649 (793)
162 PTZ00421 coronin; Provisional 95.9 1.4 3.1E-05 40.3 23.2 104 76-199 76-188 (493)
163 KOG0296 Angio-associated migra 95.8 1 2.3E-05 38.5 22.3 192 32-284 65-270 (399)
164 KOG2048 WD40 repeat protein [G 95.8 1.5 3.2E-05 40.6 17.2 171 2-192 391-584 (691)
165 KOG0772 Uncharacterized conser 95.8 0.5 1.1E-05 42.3 13.9 56 139-195 274-333 (641)
166 KOG0263 Transcription initiati 95.8 1.8 3.8E-05 40.6 18.5 193 34-286 453-648 (707)
167 PHA02713 hypothetical protein; 95.7 1.8 3.9E-05 40.4 20.1 100 15-131 273-384 (557)
168 PF07494 Reg_prop: Two compone 95.7 0.019 4.2E-07 28.6 3.1 21 257-277 3-24 (24)
169 KOG0293 WD40 repeat-containing 95.7 0.26 5.6E-06 42.8 11.4 86 3-93 322-413 (519)
170 PF05787 DUF839: Bacterial pro 95.6 0.23 4.9E-06 45.7 12.0 78 74-151 434-519 (524)
171 KOG0646 WD40 repeat protein [G 95.5 1.6 3.4E-05 38.6 15.7 176 2-198 90-296 (476)
172 PF14583 Pectate_lyase22: Olig 95.5 1.1 2.3E-05 39.3 14.8 155 112-282 58-229 (386)
173 KOG2110 Uncharacterized conser 95.5 1.5 3.2E-05 37.7 16.8 135 114-287 106-248 (391)
174 KOG0303 Actin-binding protein 95.4 0.59 1.3E-05 40.5 12.8 136 12-165 152-295 (472)
175 KOG0772 Uncharacterized conser 95.4 1.9 4.1E-05 38.8 17.6 117 63-199 305-429 (641)
176 KOG0278 Serine/threonine kinas 95.4 1 2.2E-05 36.8 13.4 119 53-199 165-287 (334)
177 PF07494 Reg_prop: Two compone 95.4 0.019 4E-07 28.7 2.4 18 181-198 6-23 (24)
178 KOG0272 U4/U6 small nuclear ri 95.3 0.51 1.1E-05 41.1 12.1 107 35-163 306-417 (459)
179 PF14269 Arylsulfotran_2: Aryl 95.3 1.6 3.5E-05 37.1 21.7 37 77-130 145-181 (299)
180 KOG2919 Guanine nucleotide-bin 95.3 0.92 2E-05 38.3 13.0 144 3-164 121-281 (406)
181 KOG0275 Conserved WD40 repeat- 95.2 0.39 8.5E-06 40.4 10.9 106 37-165 311-424 (508)
182 PF05694 SBP56: 56kDa selenium 95.1 0.99 2.1E-05 40.0 13.5 65 135-199 313-394 (461)
183 KOG4649 PQQ (pyrrolo-quinoline 95.0 1.7 3.7E-05 35.8 19.8 137 3-164 22-165 (354)
184 COG0823 TolB Periplasmic compo 94.9 2.8 6E-05 37.7 20.7 127 15-163 219-357 (425)
185 KOG4441 Proteins containing BT 94.9 3.3 7.1E-05 38.8 17.3 210 15-275 302-529 (571)
186 KOG0285 Pleiotropic regulator 94.7 2.6 5.5E-05 36.3 18.5 168 5-199 162-339 (460)
187 KOG1538 Uncharacterized conser 94.6 4 8.8E-05 38.1 20.3 47 2-50 21-71 (1081)
188 KOG2919 Guanine nucleotide-bin 94.5 1 2.2E-05 38.1 11.3 134 113-286 132-280 (406)
189 KOG0640 mRNA cleavage stimulat 94.1 0.51 1.1E-05 39.6 9.0 100 77-199 174-281 (430)
190 KOG0284 Polyadenylation factor 94.1 1.1 2.3E-05 39.1 10.9 139 3-163 106-251 (464)
191 KOG0640 mRNA cleavage stimulat 93.9 2.7 5.8E-05 35.5 12.7 114 134-285 173-289 (430)
192 KOG1273 WD40 repeat protein [G 93.8 3.7 7.9E-05 34.8 17.7 188 37-286 28-225 (405)
193 PF06433 Me-amine-dh_H: Methyl 93.8 3.8 8.3E-05 35.3 13.9 106 4-132 195-330 (342)
194 KOG0319 WD40-repeat-containing 93.7 6.3 0.00014 37.1 16.9 144 2-165 114-269 (775)
195 PRK13616 lipoprotein LpqB; Pro 93.3 7.3 0.00016 36.7 23.3 220 6-278 322-560 (591)
196 PHA02713 hypothetical protein; 93.3 5.2 0.00011 37.4 15.3 50 114-165 432-489 (557)
197 KOG0299 U3 snoRNP-associated p 93.2 5.8 0.00012 35.2 19.0 59 33-92 144-219 (479)
198 KOG0301 Phospholipase A2-activ 93.2 7.4 0.00016 36.4 19.0 99 76-199 141-239 (745)
199 KOG4378 Nuclear protein COP1 [ 93.1 4.2 9E-05 36.6 13.3 83 113-199 186-270 (673)
200 PRK02888 nitrous-oxide reducta 93.1 7.6 0.00016 36.4 17.2 127 114-287 215-351 (635)
201 PF05935 Arylsulfotrans: Aryls 93.1 3.4 7.3E-05 37.8 13.6 110 3-130 157-309 (477)
202 KOG0285 Pleiotropic regulator 93.1 3 6.4E-05 35.9 12.0 134 4-162 289-437 (460)
203 PF00058 Ldl_recept_b: Low-den 93.1 0.45 9.7E-06 27.3 5.2 40 147-189 2-42 (42)
204 KOG0310 Conserved WD40 repeat- 93.0 6.3 0.00014 35.2 17.2 150 37-212 73-229 (487)
205 TIGR02276 beta_rpt_yvtn 40-res 93.0 0.37 8E-06 27.2 4.9 42 143-188 1-42 (42)
206 COG3211 PhoX Predicted phospha 92.8 0.33 7.2E-06 44.1 6.4 73 75-153 499-573 (616)
207 KOG1538 Uncharacterized conser 92.8 3.4 7.4E-05 38.5 12.7 50 37-92 17-70 (1081)
208 PF09826 Beta_propel: Beta pro 92.8 8.1 0.00018 35.8 15.5 80 182-287 273-355 (521)
209 KOG0268 Sof1-like rRNA process 92.6 3.7 8E-05 35.4 11.8 51 113-164 209-259 (433)
210 KOG0643 Translation initiation 92.5 5.3 0.00012 33.1 18.0 175 2-199 19-210 (327)
211 KOG0268 Sof1-like rRNA process 92.5 6.5 0.00014 34.0 14.1 59 137-199 191-249 (433)
212 KOG0771 Prolactin regulatory e 92.5 3.6 7.8E-05 35.9 11.8 112 37-164 191-311 (398)
213 KOG0273 Beta-transducin family 92.4 7.8 0.00017 34.6 22.9 168 55-286 343-522 (524)
214 KOG0292 Vesicle coat complex C 92.2 12 0.00026 36.4 19.0 117 2-153 259-385 (1202)
215 KOG0918 Selenium-binding prote 92.0 1.3 2.8E-05 38.6 8.6 30 137-166 315-344 (476)
216 KOG2321 WD40 repeat protein [G 92.0 1.3 2.9E-05 40.3 9.0 139 4-163 187-342 (703)
217 KOG2110 Uncharacterized conser 91.9 3.5 7.6E-05 35.5 11.0 78 12-92 151-235 (391)
218 PF14517 Tachylectin: Tachylec 91.8 0.68 1.5E-05 37.4 6.5 104 1-123 88-207 (229)
219 KOG0289 mRNA splicing factor [ 91.6 9.3 0.0002 33.8 16.8 139 35-198 350-494 (506)
220 TIGR03118 PEPCTERM_chp_1 conse 91.6 7.8 0.00017 32.9 13.1 33 131-164 20-52 (336)
221 KOG1407 WD40 repeat protein [F 91.4 7.3 0.00016 32.2 12.3 121 6-149 120-247 (313)
222 PF02897 Peptidase_S9_N: Proly 91.3 10 0.00022 33.8 20.9 203 37-286 128-356 (414)
223 PF05694 SBP56: 56kDa selenium 91.3 11 0.00023 33.8 15.8 196 45-287 89-342 (461)
224 PF14517 Tachylectin: Tachylec 91.0 7.1 0.00015 31.7 11.5 140 37-197 38-195 (229)
225 KOG0973 Histone transcription 91.0 6.1 0.00013 38.6 12.8 132 2-156 78-242 (942)
226 KOG0310 Conserved WD40 repeat- 91.0 11 0.00024 33.6 14.7 128 7-154 169-300 (487)
227 KOG0288 WD40 repeat protein Ti 90.9 9.2 0.0002 33.6 12.6 98 37-152 346-450 (459)
228 PF00930 DPPIV_N: Dipeptidyl p 90.6 11 0.00024 32.9 16.6 83 112-199 258-347 (353)
229 KOG0319 WD40-repeat-containing 90.5 16 0.00034 34.6 15.1 109 37-165 24-136 (775)
230 KOG0306 WD40-repeat-containing 90.2 17 0.00038 34.6 18.2 168 6-199 426-612 (888)
231 KOG2321 WD40 repeat protein [G 89.7 17 0.00036 33.6 14.5 105 37-164 138-258 (703)
232 KOG2096 WD40 repeat protein [G 89.7 12 0.00026 31.9 16.6 48 113-162 208-256 (420)
233 KOG0281 Beta-TrCP (transducin 89.6 2.8 6E-05 35.9 8.3 129 38-197 241-376 (499)
234 KOG1407 WD40 repeat protein [F 89.5 11 0.00024 31.2 16.9 101 77-199 66-167 (313)
235 KOG2139 WD40 repeat protein [G 89.0 13 0.00027 32.3 11.8 97 76-192 196-293 (445)
236 KOG1539 WD repeat protein [Gen 89.0 23 0.00049 34.2 19.0 138 37-197 453-594 (910)
237 KOG1445 Tumor-specific antigen 88.9 4.9 0.00011 37.3 9.9 49 115-164 701-750 (1012)
238 KOG0283 WD40 repeat-containing 88.9 14 0.00031 35.1 13.1 138 6-164 424-576 (712)
239 KOG1272 WD40-repeat-containing 88.6 4.6 0.0001 36.0 9.2 81 112-197 271-352 (545)
240 KOG4378 Nuclear protein COP1 [ 88.6 14 0.00031 33.4 12.2 135 12-165 141-281 (673)
241 KOG2315 Predicted translation 88.2 20 0.00044 32.7 14.5 117 15-154 252-375 (566)
242 KOG4328 WD40 protein [Function 88.2 18 0.0004 32.2 17.2 28 135-163 371-398 (498)
243 TIGR02276 beta_rpt_yvtn 40-res 88.1 2.9 6.3E-05 23.3 5.6 30 113-142 13-42 (42)
244 smart00284 OLF Olfactomedin-li 88.0 14 0.00031 30.6 16.9 46 116-163 202-251 (255)
245 TIGR03074 PQQ_membr_DH membran 87.9 28 0.00061 33.9 22.3 20 43-62 194-214 (764)
246 KOG1963 WD40 repeat protein [G 87.4 28 0.00062 33.5 15.4 103 77-198 253-365 (792)
247 KOG0649 WD40 repeat protein [G 87.4 15 0.00032 30.2 17.1 72 74-165 113-187 (325)
248 COG0823 TolB Periplasmic compo 87.4 21 0.00046 32.1 13.1 54 114-167 218-273 (425)
249 PF06739 SBBP: Beta-propeller 87.1 0.66 1.4E-05 26.0 2.2 19 181-199 14-32 (38)
250 KOG2048 WD40 repeat protein [G 86.8 28 0.0006 32.7 21.5 171 5-199 81-266 (691)
251 PF01731 Arylesterase: Arylest 86.4 2.6 5.6E-05 28.5 5.2 46 13-59 35-82 (86)
252 KOG0294 WD40 repeat-containing 86.3 20 0.00043 30.5 15.3 138 3-166 137-283 (362)
253 KOG0264 Nucleosome remodeling 86.2 23 0.00051 31.3 15.0 142 4-164 190-347 (422)
254 KOG2096 WD40 repeat protein [G 86.2 20 0.00044 30.6 16.0 61 134-199 332-393 (420)
255 KOG4441 Proteins containing BT 86.1 18 0.00038 34.0 12.3 128 114-275 349-482 (571)
256 KOG0650 WD40 repeat nucleolar 85.9 30 0.00065 32.2 12.9 73 135-212 568-641 (733)
257 PF02897 Peptidase_S9_N: Proly 85.8 25 0.00054 31.3 20.9 107 79-199 127-247 (414)
258 PF05935 Arylsulfotrans: Aryls 85.8 28 0.00061 31.9 16.3 153 6-165 115-302 (477)
259 KOG0292 Vesicle coat complex C 85.6 38 0.00083 33.2 20.7 81 114-199 230-312 (1202)
260 KOG0265 U5 snRNP-specific prot 85.4 21 0.00046 30.1 16.8 112 33-164 49-163 (338)
261 KOG3881 Uncharacterized conser 85.4 14 0.0003 32.3 10.1 83 7-92 219-307 (412)
262 COG3823 Glutamine cyclotransfe 85.2 18 0.00039 29.1 12.3 131 114-286 68-203 (262)
263 PHA02790 Kelch-like protein; P 84.9 31 0.00068 31.6 18.9 157 15-199 288-455 (480)
264 KOG0273 Beta-transducin family 84.7 29 0.00064 31.1 21.6 139 3-164 245-389 (524)
265 KOG0313 Microtubule binding pr 84.3 15 0.00032 32.0 9.8 107 35-164 263-376 (423)
266 KOG0643 Translation initiation 83.9 24 0.00051 29.4 18.3 72 76-164 53-128 (327)
267 KOG0973 Histone transcription 83.7 43 0.00092 33.1 13.6 68 76-162 130-199 (942)
268 PF13570 PQQ_3: PQQ-like domai 83.0 6 0.00013 22.0 5.1 38 244-286 1-38 (40)
269 KOG0295 WD40 repeat-containing 82.7 31 0.00068 29.9 15.4 135 9-164 125-265 (406)
270 KOG1230 Protein containing rep 82.5 29 0.00064 30.8 11.0 128 13-151 97-248 (521)
271 PF02191 OLF: Olfactomedin-lik 81.7 29 0.00062 28.8 16.4 46 116-163 197-246 (250)
272 PF10647 Gmad1: Lipoprotein Lp 81.1 30 0.00065 28.6 21.7 141 37-199 28-185 (253)
273 PHA03098 kelch-like protein; P 80.6 48 0.001 30.7 16.9 135 15-166 312-466 (534)
274 KOG0301 Phospholipase A2-activ 78.8 60 0.0013 30.7 15.9 101 37-162 145-247 (745)
275 KOG0308 Conserved WD40 repeat- 78.7 60 0.0013 30.6 15.5 110 37-164 122-243 (735)
276 KOG0284 Polyadenylation factor 78.3 48 0.001 29.3 13.4 105 37-164 101-210 (464)
277 KOG0303 Actin-binding protein 78.0 48 0.001 29.2 13.7 53 112-165 152-204 (472)
278 PF08553 VID27: VID27 cytoplas 77.7 74 0.0016 31.2 14.6 138 5-163 493-646 (794)
279 PHA02790 Kelch-like protein; P 76.8 61 0.0013 29.7 18.5 181 43-286 271-469 (480)
280 PHA03098 kelch-like protein; P 76.7 64 0.0014 29.9 19.1 195 42-286 293-510 (534)
281 smart00564 PQQ beta-propeller 76.6 5.7 0.00012 20.8 3.5 22 3-24 5-28 (33)
282 KOG0307 Vesicle coat complex C 76.4 25 0.00055 34.9 9.7 140 5-163 81-239 (1049)
283 KOG4328 WD40 protein [Function 75.1 60 0.0013 29.2 10.8 30 135-164 324-353 (498)
284 KOG0321 WD40 repeat-containing 74.7 77 0.0017 29.8 14.1 59 141-199 225-292 (720)
285 PF01011 PQQ: PQQ enzyme repea 73.7 13 0.00028 20.5 4.7 22 5-26 1-24 (38)
286 TIGR03074 PQQ_membr_DH membran 73.6 95 0.0021 30.4 18.7 56 231-286 637-709 (764)
287 KOG0299 U3 snoRNP-associated p 73.5 69 0.0015 28.8 14.3 71 77-164 382-456 (479)
288 KOG1524 WD40 repeat-containing 73.1 78 0.0017 29.2 15.1 81 6-92 77-163 (737)
289 PF00930 DPPIV_N: Dipeptidyl p 72.6 65 0.0014 28.1 22.3 52 234-286 259-314 (353)
290 KOG0771 Prolactin regulatory e 72.0 70 0.0015 28.2 12.8 30 134-165 187-216 (398)
291 KOG0265 U5 snRNP-specific prot 71.9 61 0.0013 27.5 14.3 86 1-92 55-149 (338)
292 PF15416 DUF4623: Domain of un 71.4 68 0.0015 27.8 10.3 117 142-287 140-271 (442)
293 KOG0308 Conserved WD40 repeat- 71.1 92 0.002 29.4 11.4 54 4-58 182-239 (735)
294 KOG1036 Mitotic spindle checkp 70.4 67 0.0014 27.3 21.5 134 4-164 25-163 (323)
295 KOG1036 Mitotic spindle checkp 70.3 67 0.0015 27.3 17.2 103 37-164 18-124 (323)
296 KOG1408 WD40 repeat protein [F 69.1 1.1E+02 0.0024 29.4 13.9 59 137-199 600-660 (1080)
297 KOG1009 Chromatin assembly com 68.8 84 0.0018 27.8 11.5 74 74-165 64-154 (434)
298 KOG1408 WD40 repeat protein [F 68.7 66 0.0014 30.9 10.1 109 37-164 601-713 (1080)
299 KOG3914 WD repeat protein WDR4 68.3 37 0.00081 29.7 8.0 39 124-163 142-180 (390)
300 PF00400 WD40: WD domain, G-be 67.6 17 0.00038 19.5 5.3 31 131-162 9-39 (39)
301 PLN02193 nitrile-specifier pro 67.2 1E+02 0.0022 28.2 14.1 52 114-165 193-253 (470)
302 KOG0641 WD40 repeat protein [G 66.0 71 0.0015 25.9 20.7 59 37-95 37-109 (350)
303 KOG2111 Uncharacterized conser 65.3 88 0.0019 26.8 18.1 117 133-286 133-255 (346)
304 COG5276 Uncharacterized conser 65.1 88 0.0019 26.7 18.1 101 42-166 95-201 (370)
305 KOG4497 Uncharacterized conser 64.9 62 0.0013 27.9 8.5 54 135-193 93-147 (447)
306 KOG0276 Vesicle coat complex C 64.8 1.3E+02 0.0028 28.5 14.3 131 12-163 33-170 (794)
307 PF08553 VID27: VID27 cytoplas 64.6 14 0.0003 35.9 5.3 58 2-59 586-645 (794)
308 PLN02193 nitrile-specifier pro 64.5 1.1E+02 0.0025 27.8 20.2 50 114-165 244-303 (470)
309 KOG1445 Tumor-specific antigen 63.8 1.4E+02 0.0029 28.4 11.3 26 140-165 269-294 (1012)
310 KOG0306 WD40-repeat-containing 62.2 1.6E+02 0.0034 28.6 16.0 59 137-199 512-570 (888)
311 COG5276 Uncharacterized conser 61.8 1E+02 0.0022 26.3 19.9 53 4-59 96-154 (370)
312 TIGR02608 delta_60_rpt delta-6 61.8 29 0.00063 21.2 4.6 42 183-251 4-45 (55)
313 PF11725 AvrE: Pathogenicity f 61.3 74 0.0016 33.6 9.6 56 2-59 371-428 (1774)
314 KOG2395 Protein involved in va 60.9 1.1E+02 0.0025 28.2 9.8 141 37-198 338-490 (644)
315 KOG0645 WD40 repeat protein [G 58.5 1.1E+02 0.0024 25.7 21.0 108 37-164 66-180 (312)
316 KOG1215 Low-density lipoprotei 57.8 2.1E+02 0.0045 28.6 14.1 135 43-199 448-587 (877)
317 KOG0647 mRNA export protein (c 56.2 1.3E+02 0.0028 25.7 16.7 115 30-164 25-145 (347)
318 KOG0305 Anaphase promoting com 55.9 1.7E+02 0.0036 27.0 16.6 133 6-163 190-330 (484)
319 PLN02153 epithiospecifier prot 55.9 1.3E+02 0.0029 25.8 20.4 17 114-130 101-117 (341)
320 COG4247 Phy 3-phytase (myo-ino 55.5 1.2E+02 0.0027 25.3 14.8 82 115-199 127-225 (364)
321 KOG4283 Transcription-coupled 54.1 1.4E+02 0.003 25.5 10.5 103 110-212 164-280 (397)
322 PRK14131 N-acetylneuraminic ac 54.0 1.5E+02 0.0034 26.0 13.8 17 114-130 189-205 (376)
323 KOG0269 WD40 repeat-containing 53.9 1.9E+02 0.0042 28.0 10.4 85 112-199 108-197 (839)
324 TIGR03548 mutarot_permut cycli 53.3 1.4E+02 0.0031 25.4 17.9 52 114-166 139-196 (323)
325 KOG3621 WD40 repeat-containing 53.0 2.2E+02 0.0047 27.4 17.8 90 6-97 47-147 (726)
326 KOG2394 WD40 protein DMR-N9 [G 52.1 1E+02 0.0022 28.5 8.1 55 33-92 292-349 (636)
327 PF11768 DUF3312: Protein of u 50.6 1.2E+02 0.0026 28.1 8.5 51 112-164 279-329 (545)
328 PF08309 LVIVD: LVIVD repeat; 49.8 48 0.001 18.9 4.4 26 261-287 4-29 (42)
329 KOG2394 WD40 protein DMR-N9 [G 49.1 64 0.0014 29.7 6.4 24 139-163 338-361 (636)
330 KOG0650 WD40 repeat nucleolar 48.5 2.4E+02 0.0052 26.6 15.8 64 133-199 521-587 (733)
331 PF11768 DUF3312: Protein of u 48.2 1E+02 0.0022 28.7 7.6 54 5-59 272-327 (545)
332 PF10647 Gmad1: Lipoprotein Lp 48.1 1.6E+02 0.0034 24.3 14.2 92 1-92 73-182 (253)
333 PLN02153 epithiospecifier prot 47.5 1.9E+02 0.004 25.0 20.4 109 15-130 51-175 (341)
334 KOG0264 Nucleosome remodeling 47.2 2.1E+02 0.0046 25.6 11.8 64 135-199 229-292 (422)
335 KOG1230 Protein containing rep 46.5 2.2E+02 0.0048 25.6 10.4 70 54-130 99-170 (521)
336 PF14783 BBS2_Mid: Ciliary BBS 46.1 1.1E+02 0.0023 21.9 9.3 57 2-59 11-69 (111)
337 PRK10115 protease 2; Provision 46.0 2.9E+02 0.0063 26.8 18.6 74 77-166 128-209 (686)
338 KOG0321 WD40 repeat-containing 44.5 2.9E+02 0.0062 26.3 13.2 103 45-164 66-175 (720)
339 KOG0295 WD40 repeat-containing 44.2 1.3E+02 0.0029 26.3 7.3 52 113-165 313-365 (406)
340 PF14779 BBS1: Ciliary BBSome 42.6 1.2E+02 0.0026 25.3 6.7 55 3-58 194-255 (257)
341 KOG0281 Beta-TrCP (transducin 41.9 2.4E+02 0.0052 24.7 10.2 51 113-166 256-307 (499)
342 PF07676 PD40: WD40-like Beta 41.7 59 0.0013 17.6 4.3 19 137-155 12-30 (39)
343 PRK13616 lipoprotein LpqB; Pro 41.4 3.2E+02 0.0069 26.0 14.9 106 37-162 452-565 (591)
344 KOG3914 WD repeat protein WDR4 38.9 2.8E+02 0.006 24.6 12.7 111 31-166 107-225 (390)
345 KOG0307 Vesicle coat complex C 38.6 1.2E+02 0.0025 30.6 6.8 132 12-165 182-328 (1049)
346 KOG1963 WD40 repeat protein [G 38.3 4E+02 0.0086 26.2 17.4 60 135-199 253-312 (792)
347 TIGR03548 mutarot_permut cycli 37.7 2.6E+02 0.0056 23.8 19.1 81 114-199 88-180 (323)
348 KOG2377 Uncharacterized conser 36.8 3.4E+02 0.0073 24.9 18.5 39 115-153 135-173 (657)
349 PF13970 DUF4221: Domain of un 36.0 2.8E+02 0.0062 23.8 10.4 41 236-276 116-164 (333)
350 PF14269 Arylsulfotran_2: Aryl 35.5 2.8E+02 0.0061 23.6 12.8 26 37-62 148-175 (299)
351 KOG2315 Predicted translation 32.1 4.2E+02 0.0092 24.7 16.5 79 113-199 250-332 (566)
352 TIGR03803 Gloeo_Verruco Gloeo_ 31.3 94 0.002 16.9 4.4 16 231-246 13-28 (34)
353 KOG3881 Uncharacterized conser 31.1 3.8E+02 0.0082 23.8 17.1 107 135-282 204-314 (412)
354 COG4590 ABC-type uncharacteriz 31.1 4.2E+02 0.0091 24.3 9.2 32 134-167 221-252 (733)
355 TIGR03547 muta_rot_YjhT mutatr 30.9 3.5E+02 0.0075 23.3 13.1 18 114-131 168-185 (346)
356 PF13964 Kelch_6: Kelch motif 30.8 1.1E+02 0.0024 17.6 3.8 18 113-130 27-44 (50)
357 PF11763 DIPSY: Cell-wall adhe 30.0 2.1E+02 0.0046 20.5 10.8 20 180-199 82-101 (123)
358 KOG0316 Conserved WD40 repeat- 29.1 3.3E+02 0.0072 22.5 16.7 51 113-164 80-131 (307)
359 PF14339 DUF4394: Domain of un 29.1 3.3E+02 0.0071 22.4 11.2 108 37-162 31-161 (236)
360 KOG4547 WD40 repeat-containing 28.2 5E+02 0.011 24.3 13.7 86 110-199 76-164 (541)
361 KOG0649 WD40 repeat protein [G 27.8 3.6E+02 0.0078 22.5 16.5 73 34-129 117-193 (325)
362 PF15492 Nbas_N: Neuroblastoma 27.4 3.8E+02 0.0083 22.6 19.8 56 37-92 2-60 (282)
363 KOG2314 Translation initiation 27.3 5.3E+02 0.012 24.3 11.1 63 134-199 493-557 (698)
364 KOG1009 Chromatin assembly com 26.8 4.2E+02 0.0091 23.7 7.6 54 76-146 124-178 (434)
365 KOG1517 Guanine nucleotide bin 26.7 7.3E+02 0.016 25.7 19.2 225 6-284 1125-1378(1387)
366 KOG1188 WD40 repeat protein [G 26.0 4.5E+02 0.0097 23.0 12.0 52 112-164 48-102 (376)
367 PF15492 Nbas_N: Neuroblastoma 25.9 3.6E+02 0.0078 22.8 6.9 28 137-165 47-74 (282)
368 KOG0641 WD40 repeat protein [G 25.6 3.7E+02 0.0081 21.9 15.2 72 76-165 232-304 (350)
369 KOG2395 Protein involved in va 25.6 1.4E+02 0.003 27.7 4.7 57 3-59 440-498 (644)
370 COG4247 Phy 3-phytase (myo-ino 25.6 4.1E+02 0.0088 22.4 19.7 29 135-164 206-234 (364)
371 KOG1310 WD40 repeat protein [G 24.9 4.8E+02 0.01 24.5 7.9 70 78-164 53-125 (758)
372 PRK13614 lipoprotein LpqB; Pro 24.8 6.1E+02 0.013 24.1 14.4 92 1-92 390-502 (573)
373 COG5167 VID27 Protein involved 24.2 4.9E+02 0.011 24.3 7.8 105 139-279 473-584 (776)
374 PF11725 AvrE: Pathogenicity f 23.5 9.8E+02 0.021 26.1 13.9 55 76-150 363-418 (1774)
375 KOG3621 WD40 repeat-containing 23.4 6.9E+02 0.015 24.2 9.2 59 136-199 127-189 (726)
376 KOG4497 Uncharacterized conser 22.7 4.4E+02 0.0095 23.0 6.9 52 113-165 341-392 (447)
377 KOG0269 WD40 repeat-containing 22.5 6.7E+02 0.014 24.6 8.6 74 76-166 134-209 (839)
378 KOG1272 WD40-repeat-containing 21.9 6.3E+02 0.014 23.2 7.9 29 33-62 131-161 (545)
379 COG4590 ABC-type uncharacteriz 21.3 6.5E+02 0.014 23.2 8.1 29 135-165 359-387 (733)
380 PRK13613 lipoprotein LpqB; Pro 20.3 7.6E+02 0.017 23.6 15.4 91 1-91 416-522 (599)
381 KOG1645 RING-finger-containing 20.1 2.7E+02 0.006 24.8 5.3 69 138-243 198-266 (463)
382 TIGR02171 Fb_sc_TIGR02171 Fibr 20.1 9.1E+02 0.02 24.4 14.6 52 8-59 323-383 (912)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=225.45 Aligned_cols=256 Identities=35% Similarity=0.631 Sum_probs=227.1
Q ss_pred eCCccccCeEECCCC-cEEEEeCCCceEEEcc-CC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeee
Q 023085 30 IDSQTLVGLTSTKEG-HLIICDNANGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD 106 (287)
Q Consensus 30 ~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~ 106 (287)
.+++|. ||+++..| .||||+..-|++.+++ .| .+.+.....+.++...+++.++++|.+|++|++.+|+.+.+...
T Consensus 113 ~CGRPL-Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 113 LCGRPL-GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred ccCCcc-eEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEe
Confidence 468899 99999888 9999998889999995 45 67777777788888999999999999999999999999999988
Q ss_pred eeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 107 ILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
++.+...|.+++||+.++..+.+...+.+|||++.++|+..+.++++...+|.+|++++++.++.+.|++.++|.|+||.
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR 271 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIR 271 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCccee
Confidence 88888889999999998888888999999999999999999999999889999999998888888889877999999999
Q ss_pred eCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc----CCCceEEEEECCCCcEEEEEECCCCccccceE
Q 023085 187 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT----LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVT 262 (287)
Q Consensus 187 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~ 262 (287)
.+++|++||+....++..++++..+|.+|+++...|..+..... ..+...|.+.+.+|++++.++++++.....++
T Consensus 272 ~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~s 351 (376)
T KOG1520|consen 272 RDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVS 351 (376)
T ss_pred ECCCCCEEEEEecccchHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEE
Confidence 99999999999999999999999999999998877666653211 11225677778999999999999988777778
Q ss_pred EEEEeCCEEEEEecCCCeEEEEeC
Q 023085 263 SGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 263 ~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.+.+|+||+|+...++|.++++
T Consensus 352 ev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 352 EVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred EEeecCCeEEEcccCcceeEEEec
Confidence 888888999999999999999987
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.95 E-value=1.8e-25 Score=185.04 Aligned_cols=222 Identities=28% Similarity=0.465 Sum_probs=168.5
Q ss_pred CCCcEEEEe-cCCeEEEEE-C-CceEEEEeeCCccccCeEEC-CCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCc-cc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGS-KL 75 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d-~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~-~~ 75 (287)
.+|.||+.+ .++.|++++ . +....+..+. |. +++++ ++|++|++.. .++.+++ .++ ++.+.....+. +.
T Consensus 10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred CCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCccc
Confidence 378999988 688999999 4 4443333333 77 99998 8899999985 5777788 778 77776654333 67
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..||+++++++|++|+++....... ....+.|++++++ +++..+...+..||||+++|+++.||++++..
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred CCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 8999999999999999976521100 0011789999998 88888888889999999999999999999999
Q ss_pred CEEEEEEecCC--CCcceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 156 FRCRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 156 ~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
++|++|+++.. .+...+.+... ..+.|+|+++|++|+||++...
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-------------------------------- 203 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-------------------------------- 203 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--------------------------------
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--------------------------------
Confidence 99999999743 24445555432 2235999999999999999986
Q ss_pred CCceEEEEECCCCcEEEEEECCCCccccceEEEEEe---CCEEEEEec
Q 023085 232 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV---DNHLYVISL 276 (287)
Q Consensus 232 ~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~l~i~~~ 276 (287)
.++|.+++|+|+.+..+..+.. .++.+++. .++|||++.
T Consensus 204 --~~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 --GGRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp --TTEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred --CCEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence 4699999999999999998732 57788874 488999985
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.8e-24 Score=177.15 Aligned_cols=230 Identities=25% Similarity=0.397 Sum_probs=174.1
Q ss_pred CCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-c-EEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V-ENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~-~~~~~~~~~~~~~~ 77 (287)
.+.||+.+ .+++|++++ +++.+.+..+...+. ++.++..|+|+++. +|+++++ .++ . +.+.....+.+.+.
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r 112 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNR 112 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCC
Confidence 44566666 788999999 688888888877777 88999999999886 4677777 556 5 77776666777789
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
+|+..++++|++||++.+. .. .........+.|||++|....++.+...+..||||+|+||++.||++++..++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence 9999999999999998773 11 01111233468999998634444444458999999999999999999999999
Q ss_pred EEEEEecC--CCCccee--EEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 158 CRKYWLKG--ERKGKLE--TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 158 l~~~~~~~--~~~~~~~--~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
|++|+.+. ..+.... .+....++.|+|+++|.+|+||++....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~--------------------------------- 233 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG--------------------------------- 233 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---------------------------------
Confidence 99999862 2222222 2333356899999999999999766541
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEeC---CEEEEEecCCC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSN 279 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~~~~ 279 (287)
+++|.+++|+|+.+..+..|.. .++++++.+ ++|||++...+
T Consensus 234 g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 234 GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCC
Confidence 2489999999999999998853 456666653 89999998874
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.87 E-value=6.8e-20 Score=145.70 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=168.9
Q ss_pred CCCCcEEEEec-CCeEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccc
Q 023085 2 DKNGVIYTATR-DGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL 75 (287)
Q Consensus 2 d~~G~l~~~~~-~g~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~ 75 (287)
++||.+|++.+ .+.|-++| +|+.+.+.... ..|. +|.+++||..|+++.+.+|.|++ ++. ++.+.-. .....
T Consensus 70 apdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~a~ 147 (353)
T COG4257 70 APDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEHAD 147 (353)
T ss_pred CCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCcccceEEeecc-cccCC
Confidence 57899999874 56778899 89988887764 4677 99999999999999777999999 577 7776432 22223
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
...+..++|+.|+|||+... |.--|+||..+.++.+..+ ...|+||+..|||+ +|+++-.
T Consensus 148 ~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwyasla 208 (353)
T COG4257 148 ANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYASLA 208 (353)
T ss_pred CcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEEecc
Confidence 35567889999999997322 2223888887777776443 45789999999998 8999888
Q ss_pred CCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 155 KFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
++-|.++|.... ..+.+... +......+-.|+.|++|++++.
T Consensus 209 gnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg--------------------------------- 252 (353)
T COG4257 209 GNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWG--------------------------------- 252 (353)
T ss_pred ccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccC---------------------------------
Confidence 888999986432 22222211 1112455777999999999987
Q ss_pred CceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 233 GGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 233 ~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
.+.+.+|+|....-..+..|..+ ..+.++.+| .+++|......+.|++||
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfd 303 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFD 303 (353)
T ss_pred -CceeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecC
Confidence 47999999988877788876543 456777776 599999999999999997
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.78 E-value=5.6e-16 Score=150.49 Aligned_cols=232 Identities=19% Similarity=0.256 Sum_probs=164.0
Q ss_pred CCcEEEEe-cCCeEEEEE-CCceEEEEee---------------CCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG- 62 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~~~~~~~---------------~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g- 62 (287)
+|.||+++ .+++|.+++ ++........ ...|. +++++++++ |||++.. +.|.+++ .++
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 57899998 678899999 7765543322 12477 999998774 8999865 5688888 667
Q ss_pred cEEEeee-c------CC-----ccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe
Q 023085 63 VENFLSY-V------NG-----SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV 129 (287)
Q Consensus 63 ~~~~~~~-~------~~-----~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 129 (287)
++.+... . .+ ..++.|.++++++ +|.+||++.+ .+.|+++++.++.+..+
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QHQIWEYNISDGVTRVF 720 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CCeEEEEECCCCeEEEE
Confidence 6666431 0 00 1256889999998 6899998644 45688888766655433
Q ss_pred ec---------------cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCccee-----------EEec-------
Q 023085 130 AD---------------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLE-----------TFAE------- 176 (287)
Q Consensus 130 ~~---------------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~-----------~~~~------- 176 (287)
.. .+..|++++++|+++.|||++..+++|.++++++....... .+..
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 21 24578999999999999999999999999998643211000 0000
Q ss_pred cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECC---
Q 023085 177 NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--- 253 (287)
Q Consensus 177 ~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~--- 253 (287)
.....|.++++|++|+|||+... .+.|.++++++..+..+...
T Consensus 801 ~~l~~P~Gvavd~dG~LYVADs~----------------------------------N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 801 VLLQHPLGVLCAKDGQIYVADSY----------------------------------NHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred hhccCCceeeEeCCCcEEEEECC----------------------------------CCEEEEEECCCCeEEEEeccCCc
Confidence 01125899999999999999987 36899999887666554321
Q ss_pred ---CC----ccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 254 ---TG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 254 ---~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
+| ..++.+.+++.+ +|+|||++..+++|.+++++
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 11 124567888886 78999999999999999874
No 6
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.69 E-value=1.2e-14 Score=116.17 Aligned_cols=221 Identities=9% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEEEeeCC----ccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCC
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~----~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
+++||..|+.+....|.|++ +.++++|..+.. +-+ ...+|+.|+||++....---++| ..+ ++.+.. ..
T Consensus 111 ~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpa-Pq- 187 (353)
T COG4257 111 VGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPA-PQ- 187 (353)
T ss_pred ECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeeccccceecCcccCceeeecc-CC-
Confidence 46899999987666899999 678888865532 334 56789999999997542233677 445 555532 22
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc---ccceEEEccCCCEEE
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVV 149 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~ 149 (287)
-..|++|++.++|.+|++.. ..+.|.++|+.++.-..+..+.. ....+..++.++ +|
T Consensus 188 --G~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~-~w 247 (353)
T COG4257 188 --GGGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGR-AW 247 (353)
T ss_pred --CCCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCCcccccccccccCccCc-EE
Confidence 24789999999999999632 24579999998775554443322 234466678886 99
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
+++.....+++|+..... ...+- ......|+.+.+|..|++|++...
T Consensus 248 ittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~----------------------------- 295 (353)
T COG4257 248 ITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEAD----------------------------- 295 (353)
T ss_pred EeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeeccc-----------------------------
Confidence 999999999999976432 22221 122236889999999999999887
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEe
Q 023085 229 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~ 285 (287)
.+.|.||||..-.+.+|..+.-. +..+.. ..|.||.+...-+.++++.
T Consensus 296 -----agai~rfdpeta~ftv~p~pr~n----~gn~ql~gr~ge~W~~e~gvd~lv~~r 345 (353)
T COG4257 296 -----AGAIGRFDPETARFTVLPIPRPN----SGNIQLDGRPGELWFTEAGVDALVTTR 345 (353)
T ss_pred -----cCceeecCcccceEEEecCCCCC----CCceeccCCCCceeecccCcceeEEEE
Confidence 46899999999889988764421 223333 4699999999988888764
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.55 E-value=1.1e-12 Score=108.64 Aligned_cols=183 Identities=24% Similarity=0.306 Sum_probs=125.2
Q ss_pred CeEECC-CCcEEEEeCC-CceEEEcc-CCcEEEeeecCCccccccceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTK-EGHLIICDNA-NGLHKVSE-DGVENFLSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~-dg~l~v~~~~-~gi~~~~~-~g~~~~~~~~~~~~~~~~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++.++ +|+||+++.. +.|+++++ ++....... ..|.+++++ ++|.+|+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~------~~~~G~~~~~~~g~l~v~~~------------------ 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL------PGPNGMAFDRPDGRLYVADS------------------ 59 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES------SSEEEEEEECTTSEEEEEET------------------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec------CCCceEEEEccCCEEEEEEc------------------
Confidence 677886 8899999865 46999994 443332221 237889999 7899999752
Q ss_pred CceEEEEeCCCCeeEEeec------cccccceEEEccCCCEEEEEeCCC--------CEEEEEEecCCCCcceeEEeccC
Q 023085 113 HGQLLKYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK--------FRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~------~~~~~~~i~~~~~~~~l~v~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
.++..+|+.+++++.+.. ....||.++++++|+ +|+++... ++|++++.+ .+.......
T Consensus 60 -~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~~- 132 (246)
T PF08450_consen 60 -GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVADG- 132 (246)
T ss_dssp -TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEEE-
T ss_pred -CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC----CeEEEEecC-
Confidence 345666988888776543 356789999999998 99998754 569999865 222233222
Q ss_pred CCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--Cc-E--EEEE-E
Q 023085 179 PGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--GT-I--IRNL-V 251 (287)
Q Consensus 179 ~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~-~--~~~~-~ 251 (287)
-..|++|+++++|+ ||++... .+.|++++.+ +. . .+.+ .
T Consensus 133 ~~~pNGi~~s~dg~~lyv~ds~----------------------------------~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 133 LGFPNGIAFSPDGKTLYVADSF----------------------------------NGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp ESSEEEEEEETTSSEEEEEETT----------------------------------TTEEEEEEEETTTCCEEEEEEEEE
T ss_pred cccccceEECCcchheeecccc----------------------------------cceeEEEeccccccceeeeeeEEE
Confidence 23699999999996 7777765 3578888753 43 1 2223 2
Q ss_pred CCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 252 DPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 252 ~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
.+.+ ...+-+++.+ +|+||++.+.++.|.+++-
T Consensus 179 ~~~~--~g~pDG~~vD~~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 179 FPGG--PGYPDGLAVDSDGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp -SSS--SCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred cCCC--CcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence 2222 2357888887 7999999999999999974
No 8
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.55 E-value=2.6e-14 Score=96.93 Aligned_cols=88 Identities=52% Similarity=0.965 Sum_probs=72.0
Q ss_pred ceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 79 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 79 ~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
+++.++++ |.+||||++.+|....|..+++++...|.|++|||.+++++.+...+.+|||+++++|++.++|+++...+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 46889988 99999999999999999888888888899999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC
Q 023085 158 CRKYWLKGE 166 (287)
Q Consensus 158 l~~~~~~~~ 166 (287)
|.+|+++++
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999998753
No 9
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.48 E-value=2.5e-11 Score=95.11 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=110.9
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+..++-.+|++|+.|...+.- ++ . ......+.|+.+-+. ++++.+...+.-+||++|+.|.+.+|+.++.+
T Consensus 109 nR~NDgkvdP~Gryy~GtMad-~~------~-~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMAD-FG------D-DLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred cccccCccCCCCceeeeeecc-cc------c-cccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCc
Confidence 455677899999988753220 10 0 112234566666554 77777777778899999999999999999999
Q ss_pred CEEEEEE--ecCCCCcceeEEecc------CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 156 FRCRKYW--LKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 156 ~~l~~~~--~~~~~~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
..+-.|| ..++.+.+.+..... .+-.|+|+++|.+|+|||+++.
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---------------------------- 231 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---------------------------- 231 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----------------------------
Confidence 9995555 445555555443321 2236999999999999999998
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeC---CEEEEEec
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 276 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~ 276 (287)
++.|+++||. |+.+..+..|. ..++++++.+ .-+|+++.
T Consensus 232 ------g~~V~~~dp~tGK~L~eiklPt----~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 232 ------GGTVQKVDPTTGKILLEIKLPT----PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ------CcEEEEECCCCCcEEEEEEcCC----CceEEEEecCCCccEEEEEeh
Confidence 5799999986 99999998774 4588888865 34677665
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=3.1e-11 Score=117.81 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=135.2
Q ss_pred ccccCeEECC-CCcEEEEeCC-CceEEEccCC-cEEEeee--cC--------CccccccceEEEcCCC-cEEEEcCCCCC
Q 023085 33 QTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG-VENFLSY--VN--------GSKLRFANDVVEASDG-SLYFTVSSSKY 98 (287)
Q Consensus 33 ~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g-~~~~~~~--~~--------~~~~~~~~~l~~d~~g-~l~v~~~~~~~ 98 (287)
.|. ++++|+ +|+|||++.. +.|.+++.+| ....... .. ...+..|.+|++++++ .|||+|..
T Consensus 569 ~P~-gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~--- 644 (1057)
T PLN02919 569 FPG-KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE--- 644 (1057)
T ss_pred CCc-eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC---
Confidence 455 789997 5789999876 4688888667 4332221 11 1235679999999876 48998643
Q ss_pred CCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----------------cccccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 99 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------------GFYFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 99 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
...|.++|..++.++.+.. .+..|.+++++|+++.+||++..+++|+++
T Consensus 645 --------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~ 710 (1057)
T PLN02919 645 --------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEY 710 (1057)
T ss_pred --------------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEE
Confidence 3568888887676665432 134688999999777899999999999999
Q ss_pred EecCCCCccee------EEe-----ccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 162 WLKGERKGKLE------TFA-----ENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 162 ~~~~~~~~~~~------~~~-----~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
+..+....... ... ......|.+|+++++|+ ||++...
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------------------------------ 760 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------------------------------ 760 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------------------------------
Confidence 97543211100 000 00113588999999986 9999876
Q ss_pred cCCCceEEEEECCCCcEEEEEE--------------CCCC----ccccceEEEEEe-CCEEEEEecCCCeEEEEeCC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLV--------------DPTG----QLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~--------------~~~~----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.|.++++++.....+. ..+| ..+..+.+++.+ +|+|||+...+++|.+++.+
T Consensus 761 ----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~ 833 (1057)
T PLN02919 761 ----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPA 833 (1057)
T ss_pred ----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECC
Confidence 357888886532221111 0111 123456777776 68999999999999999863
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.47 E-value=3.1e-10 Score=98.54 Aligned_cols=229 Identities=18% Similarity=0.226 Sum_probs=141.6
Q ss_pred cEEEEecC----CeEEEEE----CCceEEEEe--eCCccccCeEECCCC-cEEEEeCC----CceEEEc--cC-C-cEEE
Q 023085 6 VIYTATRD----GWIKRLQ----DGTWVNWKF--IDSQTLVGLTSTKEG-HLIICDNA----NGLHKVS--ED-G-VENF 66 (287)
Q Consensus 6 ~l~~~~~~----g~i~~~~----~~~~~~~~~--~~~~~~~~i~~d~dg-~l~v~~~~----~gi~~~~--~~-g-~~~~ 66 (287)
++|+|+.. ++|+.|. +++++.... ...+|. .+++++++ .||++... .+|..+. ++ | ++.+
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps-~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~ 79 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPS-WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL 79 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSEC-CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCc-eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe
Confidence 47899865 7898877 566654432 456777 89999988 57888653 2455554 44 7 6666
Q ss_pred eeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceE--EEEeCCCCeeEEee-------------
Q 023085 67 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL--LKYDPSSNITTLVA------------- 130 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~------------- 130 (287)
..... ....|..++++++++ ||+++.. .+.| +.++.. +.+....
T Consensus 80 ~~~~~--~g~~p~~i~~~~~g~~l~vany~-----------------~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~ 139 (345)
T PF10282_consen 80 NSVPS--GGSSPCHIAVDPDGRFLYVANYG-----------------GGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPD 139 (345)
T ss_dssp EEEEE--SSSCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTT-SEEEEEEEEEESEEEESSTT
T ss_pred eeecc--CCCCcEEEEEecCCCEEEEEEcc-----------------CCeEEEEEccCC-cccceeeeecccCCCCCccc
Confidence 54321 124677899999885 6776543 3344 445443 5543321
Q ss_pred -ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC--CcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHH
Q 023085 131 -DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMK 206 (287)
Q Consensus 131 -~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~ 206 (287)
+....|+.+.++|+++.+|+++.+.++|+.|+++... +.....+.......|..++++++|+ +|+.+...
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s------ 213 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS------ 213 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT------
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC------
Confidence 1235678899999999999999999999999997543 3222222223445699999999985 77776541
Q ss_pred HhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE--EEEEEC-CCC-ccccceEEEEEe--CCEEEEEecCCC
Q 023085 207 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI--IRNLVD-PTG-QLMSFVTSGLQV--DNHLYVISLTSN 279 (287)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~--~~~~~~-~~~-~~~~~~~~~~~~--~g~l~i~~~~~~ 279 (287)
..-.++.+++ ++.. +..+.. +.+ ...+.+..+... +..||+++...+
T Consensus 214 --------------------------~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 214 --------------------------NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp --------------------------TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred --------------------------CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 1234455553 3432 222222 111 112356677665 578999999999
Q ss_pred eEEEEeCC
Q 023085 280 FIGKVQLS 287 (287)
Q Consensus 280 ~i~~~~~~ 287 (287)
.|.+|+++
T Consensus 268 sI~vf~~d 275 (345)
T PF10282_consen 268 SISVFDLD 275 (345)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEe
Confidence 99999973
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=2e-10 Score=99.79 Aligned_cols=232 Identities=17% Similarity=0.236 Sum_probs=142.2
Q ss_pred CCCC-cEEEEec----CCeEEEEE---C-CceEEEEe---eCCccccCeEECCCCc-EEEEeCCCc-eEEEc--cCC-cE
Q 023085 2 DKNG-VIYTATR----DGWIKRLQ---D-GTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNANG-LHKVS--EDG-VE 64 (287)
Q Consensus 2 d~~G-~l~~~~~----~g~i~~~~---~-~~~~~~~~---~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~--~~g-~~ 64 (287)
++++ .||+.+. .|.|..|. + ++.+.... ....|. .++++++++ ||++.+..| +..++ .+| +.
T Consensus 45 ~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~ 123 (345)
T PF10282_consen 45 SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLG 123 (345)
T ss_dssp -TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEEEEEETTTTEEEEEEECTTSEEE
T ss_pred EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEEEEEEccCCeEEEEEccCCcccc
Confidence 4455 6888875 47888887 3 66655433 334566 799999995 788887644 54444 557 44
Q ss_pred EEeeec---------CCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEE--EeCCCCeeEE----
Q 023085 65 NFLSYV---------NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDPSSNITTL---- 128 (287)
Q Consensus 65 ~~~~~~---------~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~---- 128 (287)
...... ..+....|+.+.++++|+ +|++|.+ ...|+. ++..++++..
T Consensus 124 ~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----------------~D~v~~~~~~~~~~~l~~~~~~ 186 (345)
T PF10282_consen 124 EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----------------ADRVYVYDIDDDTGKLTPVDSI 186 (345)
T ss_dssp EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----------------TTEEEEEEE-TTS-TEEEEEEE
T ss_pred eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCceEEEeecc
Confidence 432111 012245788999999985 7887643 234554 4444333433
Q ss_pred eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC--CCCcceeEEecc---CC--CCCcceeeCCCCC-EEEEEecc
Q 023085 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG--ERKGKLETFAEN---LP--GAPDNINLAPDGT-FWIAIIKL 200 (287)
Q Consensus 129 ~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~--~~~~~~~~~~~~---~~--~~~~~i~~d~~G~-lwv~~~~~ 200 (287)
.......|..++|+|+++.+|+.+...+.|..|+++. ..+......... .. ..+.+|++++||+ ||++....
T Consensus 187 ~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~ 266 (345)
T PF10282_consen 187 KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS 266 (345)
T ss_dssp ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT
T ss_pred ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC
Confidence 1244567889999999999999999999999999872 222222222111 11 1467899999996 77777551
Q ss_pred chhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE---EECCCCccccceEEEEE--eCCEEEEEe
Q 023085 201 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLMSFVTSGLQ--VDNHLYVIS 275 (287)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~--~~g~l~i~~ 275 (287)
..-.++.+++++..+.. +.. .| ..+..+.+ ++..||+++
T Consensus 267 --------------------------------~sI~vf~~d~~~g~l~~~~~~~~-~G---~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 267 --------------------------------NSISVFDLDPATGTLTLVQTVPT-GG---KFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp --------------------------------TEEEEEEECTTTTTEEEEEEEEE-SS---SSEEEEEE-TTSSEEEEEE
T ss_pred --------------------------------CEEEEEEEecCCCceEEEEEEeC-CC---CCccEEEEeCCCCEEEEEe
Confidence 12355566555333332 232 23 24677777 468899999
Q ss_pred cCCCeEEEEeCC
Q 023085 276 LTSNFIGKVQLS 287 (287)
Q Consensus 276 ~~~~~i~~~~~~ 287 (287)
..++.|.+|++|
T Consensus 311 ~~s~~v~vf~~d 322 (345)
T PF10282_consen 311 QDSNTVSVFDID 322 (345)
T ss_dssp TTTTEEEEEEEE
T ss_pred cCCCeEEEEEEe
Confidence 999999999864
No 13
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.44 E-value=3.3e-12 Score=111.45 Aligned_cols=215 Identities=17% Similarity=0.184 Sum_probs=129.4
Q ss_pred CCCCCcEEEEecCCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccc
Q 023085 1 MDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKL 75 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~ 75 (287)
+|..|.+|+||.+| +++|+ .++......++. .+...++.|..|+|||++. .|+++.++.| +.... ...+.
T Consensus 172 ~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTd-qGv~~~e~~G~~~sn~~---~~lp~ 246 (671)
T COG3292 172 FDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTD-QGVYLQEAEGWRASNWG---PMLPS 246 (671)
T ss_pred eeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEec-cceEEEchhhccccccC---CCCcc
Confidence 47899999999875 99999 566655544433 2322677899999999996 5999998555 33331 12334
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe----eccccccceEEEccCCCEEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
..+..+..|++|.+||.. .++++|+......+... ....+..+++..+.+|. ||+.
T Consensus 247 ~~I~ll~qD~qG~lWiGT-------------------enGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~ 306 (671)
T COG3292 247 GNILLLVQDAQGELWIGT-------------------ENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVG 306 (671)
T ss_pred hheeeeecccCCCEEEee-------------------cccceeEecCCCCccccccccCCccccccceeeccCCC-Eeee
Confidence 567778899999999952 34566665432332221 12234456677777786 7777
Q ss_pred eCCCCEEEEEEec------------CCCCcce---------e----------EEeccCCC---------C---CcceeeC
Q 023085 152 ESWKFRCRKYWLK------------GERKGKL---------E----------TFAENLPG---------A---PDNINLA 188 (287)
Q Consensus 152 ~~~~~~l~~~~~~------------~~~~~~~---------~----------~~~~~~~~---------~---~~~i~~d 188 (287)
.. .++++|... +...... . ...+...+ + ..-.++|
T Consensus 307 t~--~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d 384 (671)
T COG3292 307 TY--GGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLED 384 (671)
T ss_pred cc--CceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhc
Confidence 54 234444322 1100000 0 00000000 1 1223356
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 267 (287)
++|.+|+++.. .++.+++++. .-..+...+|...+.++.+.++
T Consensus 385 ~~g~lWlgs~q-----------------------------------~GLsrl~n~n-~~avlde~agl~ss~V~aived~ 428 (671)
T COG3292 385 SRGRLWLGSMQ-----------------------------------NGLSRLDNKN-EWAVLDEDAGLPSSEVSAIVEDP 428 (671)
T ss_pred cCCcEEEEecc-----------------------------------cchhhhccCC-cccccccccCCcccceeeeeecC
Confidence 67778888776 4788887544 2334455567777788888887
Q ss_pred CCEEEEEecCC
Q 023085 268 DNHLYVISLTS 278 (287)
Q Consensus 268 ~g~l~i~~~~~ 278 (287)
+++||||+.++
T Consensus 429 dnsLWIGTs~G 439 (671)
T COG3292 429 DNSLWIGTSGG 439 (671)
T ss_pred CCCEEEeccCC
Confidence 78899998754
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=1.3e-09 Score=94.18 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=136.2
Q ss_pred CCCC-cEEEEe-cCCeEEEEE---CCceEEEEe--eCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-RDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~~g~i~~~~---~~~~~~~~~--~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~~ 69 (287)
+++| .||+++ ..++|..|+ ++++..... ....|. .++++++|+ +|++... ..+..++ .+| .......
T Consensus 43 spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 43 SPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 5677 478886 467887776 455543322 234666 899999996 7777654 3466665 345 3222111
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEE------eeccccccceEEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL------VADGFYFANGVAL 141 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~------~~~~~~~~~~i~~ 141 (287)
..+ ...|..++++++|. +|+++.. .+.|..++.++ +.+.. .......|..+++
T Consensus 122 ~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 122 IEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred ccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 111 23578888999885 5665432 45566666543 33321 1122456889999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEecc-----CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchh
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN-----LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKL 213 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~~-----~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~ 213 (287)
+|+++.+|+++...+.|..|+++.. ++.....+... .+..+..++++++|+ +|++....
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~------------- 249 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA------------- 249 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-------------
Confidence 9999999999988899999998632 22111111100 011344688899986 77765431
Q ss_pred HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC-CCCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 214 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
..-.++.+++++..+..... +.+. .+..+.. ++.+||+++..++.|.+|+++
T Consensus 250 -------------------~~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 250 -------------------SLISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred -------------------CeEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11244555566543333221 1221 2334444 467999999888999998763
No 15
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.36 E-value=7.9e-10 Score=96.75 Aligned_cols=154 Identities=24% Similarity=0.297 Sum_probs=102.6
Q ss_pred CCCCCcEEEEec------------CC-eEEEEE----CCce---EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-
Q 023085 1 MDKNGVIYTATR------------DG-WIKRLQ----DGTW---VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS- 59 (287)
Q Consensus 1 ~d~~G~l~~~~~------------~g-~i~~~~----~~~~---~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~- 59 (287)
+|.+|+||++.. .+ +|.++. +|.. +.+......|. +|++.++| |||+. ...|+++.
T Consensus 21 ~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G-lyV~~-~~~i~~~~d 97 (367)
T TIGR02604 21 FDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG-VYVAT-PPDILFLRD 97 (367)
T ss_pred ECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC-EEEeC-CCeEEEEeC
Confidence 478999999962 23 898987 3544 44555556778 99999999 99987 45788884
Q ss_pred cCC-------cEEEeeecCCc---cccccceEEEcCCCcEEEEcCCCCCCCc--ceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 60 EDG-------VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLPH--EYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 60 ~~g-------~~~~~~~~~~~---~~~~~~~l~~d~~g~l~v~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
.++ .+.+....... ..+.+++++++++|.||+++........ ............+.++++++++++++
T Consensus 98 ~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e 177 (367)
T TIGR02604 98 KDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLR 177 (367)
T ss_pred CCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEE
Confidence 322 23343322221 2456889999999999998654210000 00000000112468999999988888
Q ss_pred EeeccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 128 LVADGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 128 ~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
.+...+..|+|++++++|+ +|+++......
T Consensus 178 ~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~ 207 (367)
T TIGR02604 178 VVAHGFQNPYGHSVDSWGD-VFFCDNDDPPL 207 (367)
T ss_pred EEecCcCCCccceECCCCC-EEEEccCCCce
Confidence 8888899999999999987 78887644433
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=6.8e-09 Score=89.68 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=134.2
Q ss_pred cEEEEe-cCCeEEEEE---CCceEEEE--eeCCccccCeEECCCCc-EEEEeCC-CceEEEc--cCC-cEEEeeecCCcc
Q 023085 6 VIYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK 74 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~---~~~~~~~~--~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~--~~g-~~~~~~~~~~~~ 74 (287)
.+|+++ .+++|..|+ +++.+... .....+. .++++++++ ||++... .+|..++ .+| ++...... .
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~ 78 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---L 78 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec---C
Confidence 478886 678899888 35544332 2335667 899999996 7887643 5676666 355 54433211 1
Q ss_pred ccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeE---EeeccccccceEEEccCCCEEE
Q 023085 75 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITT---LVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~---~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
...|..++++++|+ +|+++.. .+.|..++.++ +.+. ........|++++++|+++.+|
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~-----------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~ 141 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYN-----------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW 141 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcC-----------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence 23578899999986 5665322 34454454431 2221 1112345688999999999999
Q ss_pred EEeCCCCEEEEEEecCC-CCcc--eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 150 VCESWKFRCRKYWLKGE-RKGK--LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+.|..|+++.. .+.. ...........|.+++++++|+ +|+++...
T Consensus 142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~------------------------- 196 (330)
T PRK11028 142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN------------------------- 196 (330)
T ss_pred EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC-------------------------
Confidence 99998899999998642 2211 0111111234689999999986 67776531
Q ss_pred cccccCCCceEEEEECCC-CcE--EEEEEC-CCC-ccccceEEEEE--eCCEEEEEecCCCeEEEEeC
Q 023085 226 SQFITLGGGAHLIHVAED-GTI--IRNLVD-PTG-QLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~-g~~--~~~~~~-~~~-~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~ 286 (287)
..-.++.+++. +.. +..+.. +.. .....+..+.. ++..||+++...+.|.+|++
T Consensus 197 -------~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 197 -------SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred -------CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 11234444432 322 222221 111 01112333443 45679999888899999876
No 17
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=3e-08 Score=82.54 Aligned_cols=234 Identities=15% Similarity=0.182 Sum_probs=144.9
Q ss_pred CCCC-cEEEEe---cCCeEEEEE----CCceEEEEee--CC-ccccCeEECCCCc-EEEEeCCCc-eEEEc--cCC-cEE
Q 023085 2 DKNG-VIYTAT---RDGWIKRLQ----DGTWVNWKFI--DS-QTLVGLTSTKEGH-LIICDNANG-LHKVS--EDG-VEN 65 (287)
Q Consensus 2 d~~G-~l~~~~---~~g~i~~~~----~~~~~~~~~~--~~-~~~~~i~~d~dg~-l~v~~~~~g-i~~~~--~~g-~~~ 65 (287)
++++ .||.+. ..|+|..|. +|+++..... .+ .|. -+++|++|+ |+++.+..| |.++. .+| +..
T Consensus 48 ~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~ 126 (346)
T COG2706 48 NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQP 126 (346)
T ss_pred CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEEcccCCcccc
Confidence 4555 688877 257887776 3777665432 23 334 789999996 677777655 33333 457 433
Q ss_pred Eee----ecCC----ccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee----cc
Q 023085 66 FLS----YVNG----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DG 132 (287)
Q Consensus 66 ~~~----~~~~----~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~ 132 (287)
... ...+ +....+....++++++ |++.|.+ .-.++.|+.+.|++.... .+
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-----------------~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-----------------TDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-----------------CceEEEEEcccCccccccccccCC
Confidence 322 1111 1112356677888985 5555433 234555554457665432 34
Q ss_pred ccccceEEEccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEecc---CCC--CCcceeeCCCCCEEEEEeccchhHH
Q 023085 133 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAEN---LPG--APDNINLAPDGTFWIAIIKLDARRM 205 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~~---~~~--~~~~i~~d~~G~lwv~~~~~~~~~~ 205 (287)
...|.-|+|.|+++..|+....++.|.++..+.. ++...+..... ..+ ....|.+.++|+...++....+
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--- 266 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--- 266 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC---
Confidence 5677889999999999999999999988887752 23333222211 111 2345778999986556655221
Q ss_pred HHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC--CCCccccceEEEEE--eCCEEEEEecCCCeE
Q 023085 206 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD--PTGQLMSFVTSGLQ--VDNHLYVISLTSNFI 281 (287)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i 281 (287)
--.++++++++..+..+.. ..|+ .+..+.+ .+..|++++..++.|
T Consensus 267 ----------------------------sI~~f~V~~~~g~L~~~~~~~teg~---~PR~F~i~~~g~~Liaa~q~sd~i 315 (346)
T COG2706 267 ----------------------------SIAVFSVDPDGGKLELVGITPTEGQ---FPRDFNINPSGRFLIAANQKSDNI 315 (346)
T ss_pred ----------------------------eEEEEEEcCCCCEEEEEEEeccCCc---CCccceeCCCCCEEEEEccCCCcE
Confidence 2378899999777666532 2332 4556655 367899999999999
Q ss_pred EEEeCC
Q 023085 282 GKVQLS 287 (287)
Q Consensus 282 ~~~~~~ 287 (287)
.+|..|
T Consensus 316 ~vf~~d 321 (346)
T COG2706 316 TVFERD 321 (346)
T ss_pred EEEEEc
Confidence 998764
No 18
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=3.3e-08 Score=82.35 Aligned_cols=232 Identities=14% Similarity=0.116 Sum_probs=139.7
Q ss_pred CcEEEEec----CCeEEEEE-C---CceEEE--EeeCCccccCeEECCCC-cEEEEeCC---Cce--EEEc-cCC-cEEE
Q 023085 5 GVIYTATR----DGWIKRLQ-D---GTWVNW--KFIDSQTLVGLTSTKEG-HLIICDNA---NGL--HKVS-EDG-VENF 66 (287)
Q Consensus 5 G~l~~~~~----~g~i~~~~-~---~~~~~~--~~~~~~~~~~i~~d~dg-~l~v~~~~---~gi--~~~~-~~g-~~~~ 66 (287)
-.+|+||. ..+|++|+ + |+.... .....+|. -+++.+++ .||++... .|+ +.+| .+| ++.+
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~npt-yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l 81 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPT-YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL 81 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCc-eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe
Confidence 36899983 57898888 3 333222 23345676 78999999 68888544 344 5566 458 6666
Q ss_pred eeecCCccccccceEEEcCCCcEEE-EcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe----ec---------c
Q 023085 67 LSYVNGSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----AD---------G 132 (287)
Q Consensus 67 ~~~~~~~~~~~~~~l~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~~---------~ 132 (287)
.... .+...|.-+++|.+|++.+ ++.+ .+.-.|+.+..+ |.+... .. .
T Consensus 82 n~~~--~~g~~p~yvsvd~~g~~vf~AnY~---------------~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~ 143 (346)
T COG2706 82 NRQT--LPGSPPCYVSVDEDGRFVFVANYH---------------SGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQE 143 (346)
T ss_pred eccc--cCCCCCeEEEECCCCCEEEEEEcc---------------CceEEEEEcccC-CccccceeeeecCCCCCCcccc
Confidence 4321 2223457899999997544 4433 111234444332 433222 11 1
Q ss_pred ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcc
Q 023085 133 FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~ 211 (287)
...++-.-++|++++|++++-+.++|..|+++.+.+.......-.....|+.|++.++|+ .|+.+.-
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL------------ 211 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL------------ 211 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc------------
Confidence 122456678999999999999999999999985544433222212334699999999997 4554432
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC----CCCc-cccceEEEEE--eCCEEEEEecCCCeEEEE
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD----PTGQ-LMSFVTSGLQ--VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~----~~~~-~~~~~~~~~~--~~g~l~i~~~~~~~i~~~ 284 (287)
+...-++.+++....+..++. |++- ..+..+.+.. ++..||+.+..-++|.+|
T Consensus 212 --------------------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 212 --------------------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred --------------------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 223456677776444444322 2211 1123445544 356799999999999998
Q ss_pred eCC
Q 023085 285 QLS 287 (287)
Q Consensus 285 ~~~ 287 (287)
.+|
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 765
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.17 E-value=1.3e-07 Score=79.80 Aligned_cols=224 Identities=15% Similarity=0.072 Sum_probs=131.4
Q ss_pred CCCCc-EEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeecCC
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+++|. +|+.. .++.|..|+ +++..........+. .++++++|+ ++++... ..+..++ .++ +..+. .
T Consensus 39 ~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~--- 113 (300)
T TIGR03866 39 SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-V--- 113 (300)
T ss_pred CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-C---
Confidence 45675 56554 667888888 455443222233455 778899996 5666433 4577777 444 22221 1
Q ss_pred ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe
Q 023085 73 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+.+++++++|.++++... ....+..++..+++..........+..++++++++.++++.
T Consensus 114 --~~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 114 --GVEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSS 175 (300)
T ss_pred --CCCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEc
Confidence 124678999999987774211 12245566776665433222233567788999999888887
Q ss_pred CCCCEEEEEEecCCCCcceeEEec-c---CCCCCcceeeCCCCCE-EEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAE-N---LPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
...+.+..|+....+......+.. . ....|.+++++++|+. |++...
T Consensus 176 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~---------------------------- 227 (300)
T TIGR03866 176 EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP---------------------------- 227 (300)
T ss_pred CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------------------------
Confidence 667889999986432111111110 0 1113567889999874 665543
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.+.+..+|.+ ++....+.. +. .+..+.. ++..||++...++.|.++|+.
T Consensus 228 ------~~~i~v~d~~~~~~~~~~~~--~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 ------ANRVAVVDAKTYEVLDYLLV--GQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ------CCeEEEEECCCCcEEEEEEe--CC---CcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 2367777765 444444332 21 2344444 456788877677889998863
No 20
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=99.15 E-value=5.5e-10 Score=97.84 Aligned_cols=143 Identities=15% Similarity=0.065 Sum_probs=90.1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-c-cccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F-YFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~l~v~~~ 153 (287)
..+.++..|.+|.+|++ ...++++|++.+++.-..... . ...+.+..+-+++ |||...
T Consensus 165 ~~V~aLv~D~~g~lWvg-------------------T~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTd 224 (671)
T COG3292 165 TPVVALVFDANGRLWVG-------------------TPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTD 224 (671)
T ss_pred ccceeeeeeccCcEEEe-------------------cCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEec
Confidence 46778999999999995 234799999887775444322 2 2234455566666 899875
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
. .++..+..+..+.....+. ..+...-+..|.+|++|+++..
T Consensus 225 q--Gv~~~e~~G~~~sn~~~~l--p~~~I~ll~qD~qG~lWiGTen---------------------------------- 266 (671)
T COG3292 225 Q--GVYLQEAEGWRASNWGPML--PSGNILLLVQDAQGELWIGTEN---------------------------------- 266 (671)
T ss_pred c--ceEEEchhhccccccCCCC--cchheeeeecccCCCEEEeecc----------------------------------
Confidence 3 4777775542222211111 1112333556999999999997
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTS 278 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~ 278 (287)
++.|+....+.+.....+.+...+.+.++..+ +|.||+++..+
T Consensus 267 --Gl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~g 310 (671)
T COG3292 267 --GLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGG 310 (671)
T ss_pred --cceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCc
Confidence 56665543333433333455556777788877 79999998763
No 21
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.14 E-value=6.3e-09 Score=91.12 Aligned_cols=140 Identities=15% Similarity=0.189 Sum_probs=90.3
Q ss_pred CccccCeEECCCCcEEEEeCC-------------CceEEEc-c--CC-cEEEeeecCCccccccceEEEcCCCcEEEEcC
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-------------NGLHKVS-E--DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVS 94 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-------------~gi~~~~-~--~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~ 94 (287)
..|. .|++|++|+|||++.. ..|++++ . +| .........+ +..|++|++.++| |||++
T Consensus 14 ~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--l~~p~Gi~~~~~G-lyV~~- 88 (367)
T TIGR02604 14 RNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--LSMVTGLAVAVGG-VYVAT- 88 (367)
T ss_pred CCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--CCCccceeEecCC-EEEeC-
Confidence 5678 9999999999999731 1477776 4 34 3222111112 4578999999888 99963
Q ss_pred CCCCCCcceeeeeeccCCCceEEEE-eCCC-----CeeEEeecc--------ccccceEEEccCCCEEEEEeCC------
Q 023085 95 SSKYLPHEYCLDILEGKPHGQLLKY-DPSS-----NITTLVADG--------FYFANGVALSRDEDYVVVCESW------ 154 (287)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-----~~~~~~~~~--------~~~~~~i~~~~~~~~l~v~~~~------ 154 (287)
...|+++ +.+. ++.+.+... ...+++++++|||. ||++...
T Consensus 89 ------------------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~ 149 (367)
T TIGR02604 89 ------------------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKV 149 (367)
T ss_pred ------------------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCcee
Confidence 2357767 3321 133333221 23377899999996 9987652
Q ss_pred -------------CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 -------------KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 -------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+++++.++. +.+.+... .-.|.++++|++|++|++...
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccC
Confidence 146888887653 34444432 225899999999999998764
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.13 E-value=3.7e-07 Score=77.11 Aligned_cols=167 Identities=16% Similarity=0.167 Sum_probs=99.9
Q ss_pred CcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCCccccc
Q 023085 5 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
+++|++. .++.|..++ +++..........+. +++++++|+ +|++... ..+..++ .++ ....... ...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~ 74 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----GPD 74 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----CCC
Confidence 3567655 678899998 455444333344566 899999996 5666433 4577788 556 3332111 123
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+..++++++|. +|++.. ..+.|..+|.++++..........+.+++++|+++.++++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence 55678888886 555421 245788888876553322222335688999999997777765444
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEe
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII 198 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~ 198 (287)
.+..++..+.+. .... .....|..++++++|+ ||+++.
T Consensus 138 ~~~~~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 138 MAHFIDTKTYEI--VDNV--LVDQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred eEEEEeCCCCeE--EEEE--EcCCCccEEEECCCCCEEEEEcC
Confidence 566667543211 1111 1223577788999987 445543
No 23
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.13 E-value=3.1e-08 Score=83.41 Aligned_cols=186 Identities=17% Similarity=0.180 Sum_probs=115.2
Q ss_pred CeEECCCCcEEEEeCCC-------------ceEEEc-cCC--cEEEeeecC-CccccccceEEEcCC------CcEEEEc
Q 023085 37 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFLSYVN-GSKLRFANDVVEASD------GSLYFTV 93 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~-------------gi~~~~-~~g--~~~~~~~~~-~~~~~~~~~l~~d~~------g~l~v~~ 93 (287)
++.+|+.|+|||.+.+. .|+.+| .++ +..+.-... ..+....+++++|.. +.+|++|
T Consensus 5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD 84 (287)
T PF03022_consen 5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD 84 (287)
T ss_dssp EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence 78899999999998552 388999 665 444322111 122456788999962 4689987
Q ss_pred CCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-----------------c---ccceEEEcc---CCCEEEE
Q 023085 94 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-----------------Y---FANGVALSR---DEDYVVV 150 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------~---~~~~i~~~~---~~~~l~v 150 (287)
.+ ..+|..+|..+++..++.... . ...|++.+| +++.||+
T Consensus 85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf 147 (287)
T PF03022_consen 85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF 147 (287)
T ss_dssp TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence 55 347778888777655543221 1 124566654 7889999
Q ss_pred EeCCCCEEEEEEec---CCCCcc-------eeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 151 CESWKFRCRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 151 ~~~~~~~l~~~~~~---~~~~~~-------~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
....+.++++...+ ...... .+.+. ...+..+++++|++|+||++...
T Consensus 148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~--------------------- 205 (287)
T PF03022_consen 148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVE--------------------- 205 (287)
T ss_dssp EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECC---------------------
T ss_pred EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCC---------------------
Confidence 99888889998854 221111 11221 22234688999999999999988
Q ss_pred CCccccccccCCCceEEEEECCCC-----cEEEEEECCCCccccceEEEEEeC---CEEEEEec
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISL 276 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~---g~l~i~~~ 276 (287)
.++|.+.++++ +.......+. .+..+.++..+. |.||+.+.
T Consensus 206 -------------~~aI~~w~~~~~~~~~~~~~l~~d~~--~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 206 -------------QNAIGCWDPDGPYTPENFEILAQDPR--TLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -------------CTEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-
T ss_pred -------------CCeEEEEeCCCCcCccchheeEEcCc--eeeccceeeeccccCceEEEEEC
Confidence 46999999988 4444445433 256778888866 99999874
No 24
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.1e-08 Score=86.37 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=95.4
Q ss_pred CCCCCcEEEEecC------------CeEEEEE-CCceEEEEee-CCccccCeEECCCC-cEEEEeCC-CceEEEc-c--C
Q 023085 1 MDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-E--D 61 (287)
Q Consensus 1 ~d~~G~l~~~~~~------------g~i~~~~-~~~~~~~~~~-~~~~~~~i~~d~dg-~l~v~~~~-~gi~~~~-~--~ 61 (287)
+|++|.+||++.. |.|+|++ .++.++.... ...|+ +|+++||| .+|++++. ..|++++ . +
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCeEEEEecCccc
Confidence 4789999999844 5699999 6666665544 55778 99999999 79999866 5688887 3 2
Q ss_pred C-c-EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceE
Q 023085 62 G-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 139 (287)
Q Consensus 62 g-~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i 139 (287)
+ . ..-...........|.++++|.+|++|++-.. ..+.|.+++|+...+..+.-+...+..+
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEEEEECCCCCCccc
Confidence 3 1 11101111123457899999999999973111 1248999999944455554454677777
Q ss_pred EE-ccCCCEEEEEeCCC
Q 023085 140 AL-SRDEDYVVVCESWK 155 (287)
Q Consensus 140 ~~-~~~~~~l~v~~~~~ 155 (287)
+| .++.++|||+....
T Consensus 261 ~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 261 AFGGPDLNTLYITSARS 277 (307)
T ss_pred eEeCCCcCEEEEEecCC
Confidence 76 46788999998755
No 25
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.3e-06 Score=75.35 Aligned_cols=231 Identities=15% Similarity=0.150 Sum_probs=144.4
Q ss_pred CCCC-cEEEEecCC-eEEEEECC--ceEEEEeeC-CccccCeEECCCCc-EEEEeCC-CceEEEc-cCC-cEEEeeecCC
Q 023085 2 DKNG-VIYTATRDG-WIKRLQDG--TWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNG 72 (287)
Q Consensus 2 d~~G-~l~~~~~~g-~i~~~~~~--~~~~~~~~~-~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~ 72 (287)
+++| .+|+..... .+...+.. ..+...... ..|. ++++.+++. +|+.+.. +.+..++ ..- ..... ..+
T Consensus 39 ~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~--~vG 115 (381)
T COG3391 39 NPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI--PVG 115 (381)
T ss_pred cCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe--eec
Confidence 3455 566665322 23333321 122222222 4567 889998885 9999755 5688887 333 22211 111
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
..|..+++++++ .+|+++.. ...+.+..+|..++++.........|.+++++|+|+.+|++
T Consensus 116 ---~~P~~~~~~~~~~~vYV~n~~---------------~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~ 177 (381)
T COG3391 116 ---LGPVGLAVDPDGKYVYVANAG---------------NGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVT 177 (381)
T ss_pred ---cCCceEEECCCCCEEEEEecc---------------cCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEE
Confidence 278899999987 89998753 12568999998877766554444467999999999999999
Q ss_pred eCCCCEEEEEEecCCCCcceeEE--eccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 152 ESWKFRCRKYWLKGERKGKLETF--AENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
+...+.|..++.+...... ... .-.....|.+++++++|+ +|++....
T Consensus 178 ~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---------------------------- 228 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---------------------------- 228 (381)
T ss_pred ecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC----------------------------
Confidence 9888999999965432221 110 012334699999999997 88888751
Q ss_pred ccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
..+.+.+++...........+.+...........++..+|+.....+.+.++|.
T Consensus 229 ----~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 229 ----GSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ----CCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 124788888765544443222232112223333346778888777777777764
No 26
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.92 E-value=3.6e-07 Score=79.83 Aligned_cols=262 Identities=13% Similarity=0.135 Sum_probs=131.6
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-CceEEEc-cCC--cEEEeeec--C
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYV--N 71 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi~~~~-~~g--~~~~~~~~--~ 71 (287)
.+|| .+|+++.+|.|..+| +++.......+..|. ++++++||+ ++++.+. ..+..+| ++. +..+.... .
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~ 123 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV 123 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc
Confidence 4677 599999899999999 666655556677788 999999997 5666543 5688888 554 44443211 1
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~ 149 (287)
......+.++...+....|+.. -...+.++.+|..... .........++++..++|++++++
T Consensus 124 ~~~~~Rv~aIv~s~~~~~fVv~----------------lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 124 DGPESRVAAIVASPGRPEFVVN----------------LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TTS---EEEEEE-SSSSEEEEE----------------ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cccCCCceeEEecCCCCEEEEE----------------EccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 1122345567666666666632 1234678888854332 112233446788999999999999
Q ss_pred EEeCCCCEEEEEEecCCCCcceeEEecc--CC-CCCcceeeCCC-CCEEEEEecc---------c-hhHHHHh-----hc
Q 023085 150 VCESWKFRCRKYWLKGERKGKLETFAEN--LP-GAPDNINLAPD-GTFWIAIIKL---------D-ARRMKIL-----NS 210 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~i~~d~~-G~lwv~~~~~---------~-~~~~~~~-----~~ 210 (287)
++....+.|..+|.+..+ ....... .+ ..+..-..++. |-+|...... . ..+++.. ..
T Consensus 188 va~~~sn~i~viD~~~~k---~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGK---LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEGGGTEEEEEETTTTE---EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred ecccccceeEEEeeccce---EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 987777888888865321 1111100 00 01111112332 3444433211 0 0111110 00
Q ss_pred chh--HHHHHHhCCcccccccc---CCCceEEEEECCCCc-EEEEEECCCCccccceEEE--EEeCCEEEEEecCCC-eE
Q 023085 211 SKL--IKHVLAAYPKLFSQFIT---LGGGAHLIHVAEDGT-IIRNLVDPTGQLMSFVTSG--LQVDNHLYVISLTSN-FI 281 (287)
Q Consensus 211 ~~~--~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~--~~~~g~l~i~~~~~~-~i 281 (287)
-+. .-..+..+|++.+.|.. .+....|..+|.+.. ....+....+. .+..+ ..++..+|++....+ .|
T Consensus 265 I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~---~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 265 IPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK---RVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC---cEeccEECCCCCEEEEEEecCCCEE
Confidence 000 00123556666665544 444567777776542 33333321121 13333 334688999999988 99
Q ss_pred EEEeC
Q 023085 282 GKVQL 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
.++|-
T Consensus 342 ~v~D~ 346 (369)
T PF02239_consen 342 VVYDA 346 (369)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99984
No 27
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.86 E-value=1.4e-05 Score=68.78 Aligned_cols=245 Identities=10% Similarity=-0.012 Sum_probs=132.8
Q ss_pred CcEEEEecC-----CeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeC---------C-CceEEEc-cCC--c
Q 023085 5 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN---------A-NGLHKVS-EDG--V 63 (287)
Q Consensus 5 G~l~~~~~~-----g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~---------~-~gi~~~~-~~g--~ 63 (287)
.++|+.+.. ++|+.+| +++..........|. ++ +.+|| .||++.. . ..|..+| .+. .
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 368887754 7899999 556555556667788 76 99999 5899976 3 3578888 565 3
Q ss_pred EEEeeecC--CccccccceEEEcCCCc-EEEEcCCCC-----CCCcce--eeeeec---------cCCCceEEEEeCCC-
Q 023085 64 ENFLSYVN--GSKLRFANDVVEASDGS-LYFTVSSSK-----YLPHEY--CLDILE---------GKPHGQLLKYDPSS- 123 (287)
Q Consensus 64 ~~~~~~~~--~~~~~~~~~l~~d~~g~-l~v~~~~~~-----~~~~~~--~~~~~~---------~~~~~~v~~~~~~~- 123 (287)
..+..... -.....+..++++++|+ +|+++..-+ .+.... ..++.. ......+.+.|...
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~ 170 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLA 170 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceE
Confidence 33321100 01134566889999985 888764411 111111 111100 00011112222110
Q ss_pred -------CeeEEeeccc---------cccceEEEcc-CCCEEEEEeCCCCEEEEEEecCCCCcceeEEe--cc---C-CC
Q 023085 124 -------NITTLVADGF---------YFANGVALSR-DEDYVVVCESWKFRCRKYWLKGERKGKLETFA--EN---L-PG 180 (287)
Q Consensus 124 -------~~~~~~~~~~---------~~~~~i~~~~-~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~--~~---~-~~ 180 (287)
|+.......+ ..| .+.+ +++.+|++.. +.|..+|+.+........+. .. . .-
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeecccccccccc
Confidence 1111000001 112 2344 7888888865 78999997543222122111 11 1 11
Q ss_pred CCcc---eeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC
Q 023085 181 APDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG 255 (287)
Q Consensus 181 ~~~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~ 255 (287)
.|.+ ++++++| ++||+..+.. ...+..+.+.|..+|.. ++.+..+.. |
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~-------------------------~~thk~~~~~V~ViD~~t~kvi~~i~v--G 298 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRA-------------------------KWTHKTASRFLFVVDAKTGKRLRKIEL--G 298 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCc-------------------------cccccCCCCEEEEEECCCCeEEEEEeC--C
Confidence 4555 9999875 7999764410 00012223578999976 556666664 3
Q ss_pred ccccceEEEEE--eCC-EEEEEecCCCeEEEEeC
Q 023085 256 QLMSFVTSGLQ--VDN-HLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 ~~~~~~~~~~~--~~g-~l~i~~~~~~~i~~~~~ 286 (287)
. .+..+.+ ++. .||+++-.++.|.++|.
T Consensus 299 ~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 299 H---EIDSINVSQDAKPLLYALSTGDKTLYIFDA 329 (352)
T ss_pred C---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence 2 3444444 456 78888878889999986
No 28
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.74 E-value=1.1e-05 Score=77.23 Aligned_cols=174 Identities=17% Similarity=0.241 Sum_probs=111.5
Q ss_pred CCcEEEEe-cCCeEEEEE-------CCceEEEEe----------eC-----------CccccCeEECCCCcEEEEeCCCc
Q 023085 4 NGVIYTAT-RDGWIKRLQ-------DGTWVNWKF----------ID-----------SQTLVGLTSTKEGHLIICDNANG 54 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-------~~~~~~~~~----------~~-----------~~~~~~i~~d~dg~l~v~~~~~g 54 (287)
+|.||+++ ....|+|+. .+.++.... .+ ..|- ||++|++|.||+++ +..
T Consensus 418 dgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~g~lYfaD-~t~ 495 (1899)
T KOG4659|consen 418 DGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKMGNLYFAD-GTR 495 (1899)
T ss_pred CceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccCCcEEEec-ccE
Confidence 68999987 445788876 233444321 11 1466 99999999999998 457
Q ss_pred eEEEccCC-cEEEeeecC---------------CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEE
Q 023085 55 LHKVSEDG-VENFLSYVN---------------GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 117 (287)
Q Consensus 55 i~~~~~~g-~~~~~~~~~---------------~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~ 117 (287)
|-.+|.+| ++.+..... ...+.-|+.+++++ ++.|+|-| .+-|+
T Consensus 496 IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld-------------------~nvvl 556 (1899)
T KOG4659|consen 496 IRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD-------------------TNVVL 556 (1899)
T ss_pred EEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee-------------------cceEE
Confidence 88888888 777653221 12345789999997 78999964 34577
Q ss_pred EEeCCCCeeEEeecc---------------------ccccceEEEccCCCEEEEEeCCCCEEEEEEe---cCC------C
Q 023085 118 KYDPSSNITTLVADG---------------------FYFANGVALSRDEDYVVVCESWKFRCRKYWL---KGE------R 167 (287)
Q Consensus 118 ~~~~~~~~~~~~~~~---------------------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~---~~~------~ 167 (287)
++++. ..+..+... +..+..|+++++|. |||+++.+.+|-+... ++. .
T Consensus 557 rit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa 634 (1899)
T KOG4659|consen 557 RITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGTISILAGA 634 (1899)
T ss_pred EEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCceEEEecCC
Confidence 77765 444433210 12356789999996 9999998876655442 211 0
Q ss_pred Ccce--------eEE------ec-cCCCCCcceeeCCCCCEEEEEecc
Q 023085 168 KGKL--------ETF------AE-NLPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 168 ~~~~--------~~~------~~-~~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.+.+ ..| +. ..-..|..+|+.|||+++++...+
T Consensus 635 ~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 635 KSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred CCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc
Confidence 0100 011 00 011247889999999999999763
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.68 E-value=5.4e-05 Score=62.43 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=127.9
Q ss_pred CCC-cEEEEecCCeEEEEE--CC-ceEEEEeeCCccccCeEECCCCcEEEEeC-CCceEEEc-cCC--cEEEeeecCCcc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLSYVNGSK 74 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~-~~~~~~~~~~~~~~~i~~d~dg~l~v~~~-~~gi~~~~-~~g--~~~~~~~~~~~~ 74 (287)
+++ .|++++.+|.|..|+ ++ ....+........ .+.+.++++++++.. .+.+..++ .++ ...+. ..
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~ 134 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-----GH 134 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-----cC
Confidence 345 677777888999998 32 2233332222344 788888888777765 45577777 545 33332 11
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+..+.+.+++.++++. ...+.|..+|..+++.. .+.........+.++++++.++++..
T Consensus 135 ~~~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASS-----------------SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred CCcEEEEEEcCcCCEEEEE-----------------cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC
Confidence 2356788888887776642 12456777887644432 22222335677889999987777765
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.+.+..|+....+. ...+. .....+..+++++++.+.++...
T Consensus 198 -~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~~---------------------------------- 239 (289)
T cd00200 198 -DGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGSE---------------------------------- 239 (289)
T ss_pred -CCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEcC----------------------------------
Confidence 67889998753211 11111 11224667888888877777763
Q ss_pred ceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 234 GAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
.+.+..++.+ ++....+.... ..+..+... ++.++++....+.|.++
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHT----NSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred CCcEEEEEcCCceeEEEccccC----CcEEEEEECCCCCEEEEecCCCeEEec
Confidence 2467777754 55555555222 246666665 34444444455566654
No 30
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=3e-05 Score=68.30 Aligned_cols=210 Identities=13% Similarity=0.125 Sum_probs=134.7
Q ss_pred EEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCc-eEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-
Q 023085 16 IKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANG-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS- 88 (287)
Q Consensus 16 i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~- 88 (287)
+..++ +..+.........|. ++++.++| .++++..... +..++ ... .+... ......|.++++.+.+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~-~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~----~~g~~~p~~i~v~~~~~~ 87 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPG-GVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL----SVGGVYPAGVAVNPAGNK 87 (381)
T ss_pred eEEEeecccEEEEEeecCCCCc-eeEEcCccCEEEEEeecCceeeecccccceeeeec----cCCCccccceeeCCCCCe
Confidence 44444 333333334444677 89999999 7899875544 44443 211 22211 11115678889998876
Q ss_pred EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC--CCCEEEEEEecCC
Q 023085 89 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGE 166 (287)
Q Consensus 89 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~--~~~~l~~~~~~~~ 166 (287)
+|+.+. ....+..+|..+..+.........|.+++++++++.+|+++. .++.+..+|....
T Consensus 88 vyv~~~-----------------~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 88 VYVTTG-----------------DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred EEEecC-----------------CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 899642 245788888655544443333458999999999999999998 4688999986543
Q ss_pred CCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc
Q 023085 167 RKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT 245 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~ 245 (287)
+.... .+. ...|.+++++++|+ +|++... .+.|..++.++.
T Consensus 151 ~~~~~-~~v---G~~P~~~a~~p~g~~vyv~~~~----------------------------------~~~v~vi~~~~~ 192 (381)
T COG3391 151 KVTAT-IPV---GNTPTGVAVDPDGNKVYVTNSD----------------------------------DNTVSVIDTSGN 192 (381)
T ss_pred eEEEE-Eec---CCCcceEEECCCCCeEEEEecC----------------------------------CCeEEEEeCCCc
Confidence 32222 222 12578999999997 9999954 358888988777
Q ss_pred EEEEEECCC--CccccceEEEEE--eCCEEEEEecCC--CeEEEEeC
Q 023085 246 IIRNLVDPT--GQLMSFVTSGLQ--VDNHLYVISLTS--NFIGKVQL 286 (287)
Q Consensus 246 ~~~~~~~~~--~~~~~~~~~~~~--~~g~l~i~~~~~--~~i~~~~~ 286 (287)
.+.. ..+. -.....+..+.. ++.++|+....+ +.+.++|.
T Consensus 193 ~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~ 238 (381)
T COG3391 193 SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDT 238 (381)
T ss_pred ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeC
Confidence 6664 2211 112234555555 457799998887 58888775
No 31
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.65 E-value=1.2e-05 Score=69.52 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=85.3
Q ss_pred CCCCcEEEEecCCeEEEEE-CCce-EEEEeeC-------CccccCeEECCC----CcEEEEeCC---------CceEEEc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DGTW-VNWKFID-------SQTLVGLTSTKE----GHLIICDNA---------NGLHKVS 59 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~~~-~~~~~~~-------~~~~~~i~~d~d----g~l~v~~~~---------~gi~~~~ 59 (287)
.+||+|+++...|+|.+++ ++.. ..+.... .... +++++++ +.||++... ..|.++.
T Consensus 10 ~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~ 88 (331)
T PF07995_consen 10 LPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFT 88 (331)
T ss_dssp ETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEE
T ss_pred eCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCCcceeeEEEe
Confidence 4689999999999999999 6665 3332221 1224 7899984 889998542 1466665
Q ss_pred -cCC------cEEEeeecCC--ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC------
Q 023085 60 -EDG------VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN------ 124 (287)
Q Consensus 60 -~~g------~~~~~~~~~~--~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 124 (287)
..+ .+.+...... ...+....|+++++|.||++..+.-. .... + ......+.|+|++++..
T Consensus 89 ~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~-~-~~~~~~G~ilri~~dG~~p~dnP 164 (331)
T PF07995_consen 89 LSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNA-Q-DPNSLRGKILRIDPDGSIPADNP 164 (331)
T ss_dssp EETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGG-C-STTSSTTEEEEEETTSSB-TTST
T ss_pred ccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccc-c-ccccccceEEEecccCcCCCCCc
Confidence 222 1222221111 22345567999999999997433111 0000 0 01223578999997632
Q ss_pred -------eeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 125 -------ITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 125 -------~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+.++..+..|.+++|+|....||+++...
T Consensus 165 ~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 165 FVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp TTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred cccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 1234456678899999999844599998644
No 32
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.63 E-value=2.4e-05 Score=64.23 Aligned_cols=192 Identities=16% Similarity=0.211 Sum_probs=106.5
Q ss_pred CeEECCC-CcEEEEeCC-CceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~d-g~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
||+++++ ++||+.... ..|+.++.+| ++.+. . .+ ...+.+|+.-.++.+.+++ ..
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~-l-~g--~~D~EgI~y~g~~~~vl~~-----------------Er 84 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP-L-DG--FGDYEGITYLGNGRYVLSE-----------------ER 84 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEE-----------------TT
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe-C-CC--CCCceeEEEECCCEEEEEE-----------------cC
Confidence 9999987 568877544 4588888667 44442 1 11 4567889998888777753 22
Q ss_pred CceEEEEeC--CCCee-----EEeeccc-----cccceEEEccCCCEEEEEeCCCC-EEEEEEe--cCCCCcce--eEEe
Q 023085 113 HGQLLKYDP--SSNIT-----TLVADGF-----YFANGVALSRDEDYVVVCESWKF-RCRKYWL--KGERKGKL--ETFA 175 (287)
Q Consensus 113 ~~~v~~~~~--~~~~~-----~~~~~~~-----~~~~~i~~~~~~~~l~v~~~~~~-~l~~~~~--~~~~~~~~--~~~~ 175 (287)
.+.|+.++. .+..+ ..+.-.. ....|+++++.++.||++..... +|+.++. ........ ..+.
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 455655543 22211 1111111 22478999999888888875443 4666653 11110000 0000
Q ss_pred --ccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC
Q 023085 176 --ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD 252 (287)
Q Consensus 176 --~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~ 252 (287)
...-..+.++++|+ .|+||+-+... ..|..+|.+|+.+..+..
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~~G~~~~~~~L 210 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDRQGRVVSSLSL 210 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-TT--EEEEEE-
T ss_pred cccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECCCCCEEEEEEe
Confidence 00112478899987 57899998772 489999999999988877
Q ss_pred CCC-----ccccceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 253 PTG-----QLMSFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 253 ~~~-----~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
..| ..+..+-+++++ +|+|||.+ .-|..++|
T Consensus 211 ~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 211 DRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred CCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 554 234578899997 79999998 45666665
No 33
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.60 E-value=2.1e-05 Score=64.47 Aligned_cols=178 Identities=12% Similarity=0.152 Sum_probs=95.5
Q ss_pred CCcEEEEe-cCCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEc-c-CC--cEE--Eee---e
Q 023085 4 NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS-E-DG--VEN--FLS---Y 69 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~-~g--~~~--~~~---~ 69 (287)
++.||+.+ ..+.|+.++ +|+....... ...+. +|+.-.+|++.+++.. +.++.+. . ++ ... +.. .
T Consensus 33 ~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 33 TGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLG 111 (248)
T ss_dssp TTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE--
T ss_pred CCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecc
Confidence 36788766 678899999 7766544332 24567 8999888888888754 4566666 2 22 211 111 1
Q ss_pred cCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeC--CCCeeEEee--------ccccccce
Q 023085 70 VNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--------DGFYFANG 138 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~--------~~~~~~~~ 138 (287)
..........+++.|+. ++++++. ......|+.++. ....+.... .....+.+
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~k----------------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAK----------------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEE----------------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccCCCcceEEEEEcCCCCEEEEEe----------------CCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 11111234678999986 5777752 112345676654 212222111 12345789
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC------CCCcceeeCCCCCEEEEEec
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++|....||+.+..+.+|..+|.++...... ....... .-|.||++|++|+|||++.+
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp 241 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP 241 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEETT
T ss_pred eEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcCC
Confidence 999999888999998899999999655321111 1111100 14899999999999999987
No 34
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.57 E-value=2.5e-05 Score=69.25 Aligned_cols=216 Identities=12% Similarity=0.129 Sum_probs=114.4
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccc--ccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKL--RFA 78 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~--~~~ 78 (287)
++.+|+++.+|.++.+| +|+............+...+. ++.+++.+....++.+| .+|...+......... ...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 56899999899999999 666543332222222122333 67899887655699999 7782222111111100 000
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccc---------eEEEcc--CCCE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN---------GVALSR--DEDY 147 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---------~i~~~~--~~~~ 147 (287)
..-++. ++.+++. ...+.++.+++++|+...... ...+. .+..+| .++.
T Consensus 199 ~sP~v~-~~~v~~~------------------~~~g~v~a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~ 258 (394)
T PRK11138 199 SAPATA-FGGAIVG------------------GDNGRVSAVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGV 258 (394)
T ss_pred CCCEEE-CCEEEEE------------------cCCCEEEEEEccCChhhheec-cccCCCccchhcccccCCCcEEECCE
Confidence 111222 3566664 234678888877776433211 00000 000111 2446
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccc
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ 227 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (287)
+|+... .+.++++|...++. .+..... .+..++. .+++||+++..
T Consensus 259 vy~~~~-~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~---------------------------- 303 (394)
T PRK11138 259 VYALAY-NGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQN---------------------------- 303 (394)
T ss_pred EEEEEc-CCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCC----------------------------
Confidence 888764 57899999764321 1211111 1223343 36789998865
Q ss_pred cccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 228 FITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 228 ~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.++++ |+.++......+. ..+.....+++||+++..+ .|..+|.
T Consensus 304 -------g~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G-~l~~ld~ 352 (394)
T PRK11138 304 -------DRVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEG-YLHWINR 352 (394)
T ss_pred -------CeEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCC-EEEEEEC
Confidence 588888864 6666654432221 1233334578888887553 5655553
No 35
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.55 E-value=1.2e-05 Score=77.00 Aligned_cols=208 Identities=19% Similarity=0.230 Sum_probs=117.2
Q ss_pred ccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCC-----CCcce--
Q 023085 33 QTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKY-----LPHEY-- 103 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~-----~~~~~-- 103 (287)
.|+ .++..+||+|+|++. +-|-|+.++| +..+....... ..+-+-||+++ +|+||++|...+. .+...
T Consensus 366 aPv-ala~a~DGSl~VGDf-NyIRRI~~dg~v~tIl~L~~t~-~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~ 442 (1899)
T KOG4659|consen 366 APV-ALAYAPDGSLIVGDF-NYIRRISQDGQVSTILTLGLTD-TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDS 442 (1899)
T ss_pred cee-eEEEcCCCcEEEccc-hheeeecCCCceEEEEEecCCC-ccceeEEEecCcCceEEecCCCcceEEEeccCCcccc
Confidence 356 788999999999985 4688888888 66665433221 22345689998 7999998755220 00000
Q ss_pred --eeeeeccCCCceEEEEeCC--CCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC------CC-ccee
Q 023085 104 --CLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE------RK-GKLE 172 (287)
Q Consensus 104 --~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~------~~-~~~~ 172 (287)
+.|.+.+++. .....|.. .|... ....+.+|.||+++..|. ||+++ +..|.++|.++- .. .+.+
T Consensus 443 ~~N~evvaG~Ge-~Clp~desCGDGalA-~dA~L~~PkGIa~dk~g~-lYfaD--~t~IR~iD~~giIstlig~~~~~~~ 517 (1899)
T KOG4659|consen 443 RNNYEVVAGDGE-VCLPADESCGDGALA-QDAQLIFPKGIAFDKMGN-LYFAD--GTRIRVIDTTGIISTLIGTTPDQHP 517 (1899)
T ss_pred ccCeeEEeccCc-CccccccccCcchhc-ccceeccCCceeEccCCc-EEEec--ccEEEEeccCceEEEeccCCCCccC
Confidence 0011111110 01111110 01000 012356799999999886 99997 456888885431 00 0000
Q ss_pred EE-e-------ccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 023085 173 TF-A-------ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 243 (287)
Q Consensus 173 ~~-~-------~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (287)
+. + .-.-.+|..+++|| ++.|+|-... -|.+++++
T Consensus 518 p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n------------------------------------vvlrit~~ 561 (1899)
T KOG4659|consen 518 PRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN------------------------------------VVLRITVV 561 (1899)
T ss_pred ccccccccchhheeeecccceeecCCCCeEEEeecc------------------------------------eEEEEccC
Confidence 00 0 00113689999998 8899998876 67788877
Q ss_pred CcEEEEEECCCCcccc----------------ceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 244 GTIIRNLVDPTGQLMS----------------FVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~----------------~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
+++......|--.... ....+.+. +|.|||+...+.+|-++
T Consensus 562 ~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrv 619 (1899)
T KOG4659|consen 562 HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRV 619 (1899)
T ss_pred ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhhe
Confidence 7665332211110010 12455554 79999998887766544
No 36
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.55 E-value=1.2e-05 Score=73.94 Aligned_cols=216 Identities=17% Similarity=0.167 Sum_probs=138.8
Q ss_pred EEEEecCCeEEEEE-CCce------E-EEEeeCCccccCeEECC-CCcEEEEeCC-CceEEEccCC--cEEEeeecCCcc
Q 023085 7 IYTATRDGWIKRLQ-DGTW------V-NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSK 74 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~~------~-~~~~~~~~~~~~i~~d~-dg~l~v~~~~-~gi~~~~~~g--~~~~~~~~~~~~ 74 (287)
|.++ +++.|.++. ++.. . .+..+...++ +|.+|= +..+|.++.. +.|-+-.-.| -+.+.. ..
T Consensus 993 LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~~ 1066 (1289)
T KOG1214|consen 993 LLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----SG 1066 (1289)
T ss_pred EEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----cc
Confidence 4444 677787776 3221 1 1233344567 999984 4456766644 3455554334 333321 23
Q ss_pred ccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+.+|.+|++|--+ ++|.+|+- .....|..+|-+ -+...+...+-.|.+|+.++-++.||+++.
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS~---------------lD~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDW 1130 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDSV---------------LDKIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDW 1130 (1289)
T ss_pred CCCccceeeeeccceeeeeccc---------------cchhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccc
Confidence 5689999999654 67777643 123457777643 233344567889999999998888999997
Q ss_pred CC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC--EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccc
Q 023085 154 WK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI 229 (287)
Q Consensus 154 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (287)
.. .+|-+.++++ .+.++++++.-++|+|+++|+..+ -|+-...
T Consensus 1131 nRenPkIets~mDG---~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt------------------------------ 1177 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDG---ENRRILINTDIGLPNGLTFDPFSKLLCWVDAGT------------------------------ 1177 (1289)
T ss_pred cccCCcceeeccCC---ccceEEeecccCCCCCceeCcccceeeEEecCC------------------------------
Confidence 54 4677777765 345677777778999999998765 3554433
Q ss_pred cCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 230 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 230 ~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.++..+.++|.-.+.+.. + +.++-++..++..+|.+.+.-++|+-+++
T Consensus 1178 -----~rleC~~p~g~gRR~i~~--~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1178 -----KRLECTLPDGTGRRVIQN--N--LQYPFSITSYADHFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -----cceeEecCCCCcchhhhh--c--ccCceeeeeccccceeeccccCceEEeec
Confidence 477788887654444331 2 34667777776679999998888877654
No 37
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=0.00023 Score=64.03 Aligned_cols=154 Identities=15% Similarity=0.084 Sum_probs=86.7
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.. +.+........ ...+.+||+ |..+... ..|+.++ .+| .+.+... . .......+.++
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~----g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-P----GMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-C----CcccCcEECCC
Confidence 566666 4433 33332222223 677899996 4444322 3588888 667 5555322 1 12345678888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~ 163 (287)
|. |.++.. ......||.++.++++...+...........++|||+.++++... ...|++++.
T Consensus 257 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 257 GRKVVMSLS---------------QGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCEEEEEEe---------------cCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence 86 444311 112346999998878776665433334457899999987776543 246888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++... +.+. ...+......+.++|+.
T Consensus 322 ~g~~~---~~lt-~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 322 DGSNP---RRIS-FGGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCCe---EEee-cCCCcccCeEECCCCCE
Confidence 65322 2221 11222334667788853
No 38
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.54 E-value=0.00023 Score=62.30 Aligned_cols=170 Identities=14% Similarity=0.172 Sum_probs=95.0
Q ss_pred CcEE-EEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 5 GVIY-TAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 5 G~l~-~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
++|+ +.. .+|.|..++ +.+..........+..++++.+||+ +|+++....|.++| .++ +..+.. + .
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G---~ 78 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---G---G 78 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---S
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---C---C
Confidence 3455 444 578999999 3444333333333332677899996 88888666799999 565 444422 2 3
Q ss_pred ccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--------cccceEEEccCCCE
Q 023085 77 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDY 147 (287)
Q Consensus 77 ~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~ 147 (287)
.+.+++++++|+ +++++. ..+.+..+|.++.+........ ..+.++..++....
T Consensus 79 ~~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~ 141 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE 141 (369)
T ss_dssp EEEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred CcceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence 578899999997 455431 2467888998776643321111 12346666677765
Q ss_pred EEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++++-...+.++..|..+.+......+ .....|.+..+|++|+.+++...
T Consensus 142 fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 142 FVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEG
T ss_pred EEEEEccCCeEEEEEeccccccceeee--cccccccccccCcccceeeeccc
Confidence 555555568999998765321111111 12235888999999987766544
No 39
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.51 E-value=9.2e-05 Score=65.20 Aligned_cols=125 Identities=11% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCceEEEEeCCCCeeEEeecccccc-------------ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccC
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFA-------------NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~-------------~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
..+.++.+|+.+|+...... ...+ ....+ .++.+|+... .+.++++|.+.++. .+....
T Consensus 198 ~~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~-~g~l~a~d~~tG~~----~W~~~~ 269 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVV--DGGQVYAVSY-QGRVAALDLRSGRV----LWKRDA 269 (377)
T ss_pred CCCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEE--ECCEEEEEEc-CCEEEEEECCCCcE----EEeecc
Confidence 44678888887776543211 0000 01112 2456888764 56899999764321 121111
Q ss_pred CCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCcc
Q 023085 179 PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQL 257 (287)
Q Consensus 179 ~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 257 (287)
. .....+++ ++++|+++.. +.++.++.+ |+.++.+....+.
T Consensus 270 ~-~~~~p~~~-~~~vyv~~~~-----------------------------------G~l~~~d~~tG~~~W~~~~~~~~- 311 (377)
T TIGR03300 270 S-SYQGPAVD-DNRLYVTDAD-----------------------------------GVVVALDRRSGSELWKNDELKYR- 311 (377)
T ss_pred C-CccCceEe-CCEEEEECCC-----------------------------------CeEEEEECCCCcEEEccccccCC-
Confidence 1 12233443 5789988754 578889874 7777766322221
Q ss_pred ccceEEEEEeCCEEEEEecCCCeEEEEe
Q 023085 258 MSFVTSGLQVDNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 258 ~~~~~~~~~~~g~l~i~~~~~~~i~~~~ 285 (287)
..+.....+++||+++..+ .|..++
T Consensus 312 --~~ssp~i~g~~l~~~~~~G-~l~~~d 336 (377)
T TIGR03300 312 --QLTAPAVVGGYLVVGDFEG-YLHWLS 336 (377)
T ss_pred --ccccCEEECCEEEEEeCCC-EEEEEE
Confidence 1223333567888776543 455554
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.51 E-value=0.00037 Score=57.36 Aligned_cols=171 Identities=17% Similarity=0.243 Sum_probs=97.5
Q ss_pred CCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
+++ .|.+++.+|.|..|+ +++..........+...+.+.++++ ++++...+.+..++ .++ ...+... .
T Consensus 19 ~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~-----~ 93 (289)
T cd00200 19 PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH-----T 93 (289)
T ss_pred CCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-----C
Confidence 454 566677788888888 3332222222222222677788884 55555445677777 554 3333211 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++...+++.++++. ...+.+..++..+++.... .........+.++|+++.++.+ ..
T Consensus 94 ~~i~~~~~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~ 155 (289)
T cd00200 94 SYVSSVAFSPDGRILSSS-----------------SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS-SQ 155 (289)
T ss_pred CcEEEEEEcCCCCEEEEe-----------------cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE-cC
Confidence 256778888887777752 2256788888765553332 2223345778889987755544 34
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
.+.+..|+....+. ...+. ........+.+.+++ .+++++..
T Consensus 156 ~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 156 DGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred CCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCC
Confidence 67788998753221 11221 122246778888888 45555543
No 41
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.51 E-value=0.00014 Score=64.14 Aligned_cols=213 Identities=15% Similarity=0.149 Sum_probs=114.0
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccce
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND 80 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~ 80 (287)
++.+|+++.+|.|+.++ +|+.............+++.+ ++++|+++....++.+| .+|...+.....+.....|
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p-- 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP-- 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC--
Confidence 56899999889999999 666533222222222144444 67899988666799999 6772222221111111111
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc------cceEEEccCCCEEEEEeCC
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~l~v~~~~ 154 (287)
.+ .++.+++. ...+.|+.+|+++|++......... ....++. + +.+|+.. .
T Consensus 142 -~v-~~~~v~v~------------------~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~-~ 198 (377)
T TIGR03300 142 -LV-ANGLVVVR------------------TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGF-A 198 (377)
T ss_pred -EE-ECCEEEEE------------------CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEEC-C
Confidence 12 24567773 2356799999887876443211100 0111222 2 3466654 4
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCC---------CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGA---------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
++.++.+|..+++..-..... ...+. .....+ .++.+|+++..
T Consensus 199 ~g~v~ald~~tG~~~W~~~~~-~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-------------------------- 250 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQRVA-LPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-------------------------- 250 (377)
T ss_pred CCEEEEEEccCCCEeeeeccc-cCCCCCchhhhhccCCccEE-ECCEEEEEEcC--------------------------
Confidence 568889887543211111110 00000 001122 25678887765
Q ss_pred cccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 226 SQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.++++ |+.++..... ........+++||+++ ..+.|..+|.
T Consensus 251 ---------g~l~a~d~~tG~~~W~~~~~------~~~~p~~~~~~vyv~~-~~G~l~~~d~ 296 (377)
T TIGR03300 251 ---------GRVAALDLRSGRVLWKRDAS------SYQGPAVDDNRLYVTD-ADGVVVALDR 296 (377)
T ss_pred ---------CEEEEEECCCCcEEEeeccC------CccCceEeCCEEEEEC-CCCeEEEEEC
Confidence 578889874 7777765421 1233445688888886 3456776664
No 42
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=0.00014 Score=65.26 Aligned_cols=196 Identities=16% Similarity=0.192 Sum_probs=112.0
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|++.+. ...|+.++ .++...+........ ...+.+||+ |+++.... .|++++ .++ .+.+...
T Consensus 212 SpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~ 290 (433)
T PRK04922 212 SPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH 290 (433)
T ss_pred CCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccC
Confidence 4567 4666552 23588888 455555443333333 678899996 55443222 489998 666 6555322
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......++++|+ ++++. . ..+...||.++..+++.+.+...........++|+|+.+
T Consensus 291 ~-----~~~~~~~~spDG~~l~f~s-d--------------~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 291 F-----GIDTEPTWAPDGKSIYFTS-D--------------RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred C-----CCccceEECCCCCEEEEEE-C--------------CCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 1 1224567888886 44321 1 012236898988767766554322334457899999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+ ..|+.++++++. ...+.. ........+.++|+ |++++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~---~~~Lt~--~~~~~~p~~spdG~~i~~~s~~-------------------------- 399 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGS---VRTLTP--GSLDESPSFAPNGSMVLYATRE-------------------------- 399 (433)
T ss_pred EEEECCCCceeEEEEECCCCC---eEECCC--CCCCCCceECCCCCEEEEEEec--------------------------
Confidence 8876433 358888875432 222221 11233467788887 3443332
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
.....|+.++.+|.....+..+.+
T Consensus 400 ------~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 400 ------GGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred ------CCceEEEEEECCCCceEEcccCCC
Confidence 113478888888877776654433
No 43
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=0.00014 Score=65.61 Aligned_cols=196 Identities=13% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCCC-cEEEEe-cC--CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-RD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~~--g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+ .+ ..|+.++ .++.+.+........ ..++.|||+ |+++.... .|+.++ .++ .+.+...
T Consensus 226 SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~ 304 (448)
T PRK04792 226 SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH 304 (448)
T ss_pred CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC
Confidence 3566 355444 22 3577777 455544443333333 678899996 65543222 388888 666 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......++++|. |+++.. ......||+++.++++.+.+..........+++|||+.+
T Consensus 305 ~-----~~~~~p~wSpDG~~I~f~s~---------------~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 305 R-----AIDTEPSWHPDGKSLIFTSE---------------RGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred C-----CCccceEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEE
Confidence 1 1234456788886 444311 112347999998877776654322233456789999998
Q ss_pred EEEeCCCC--EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWKF--RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++....+ .|+.++++++. ....... .......+.++|+ |++++...
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~------------------------- 414 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ------------------------- 414 (448)
T ss_pred EEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC-------------------------
Confidence 88765433 57778875532 2222111 1122346777875 44444331
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
....++.++.+|+....+..+.+
T Consensus 415 -------g~~~l~~~~~~G~~~~~l~~~~g 437 (448)
T PRK04792 415 -------GKQVLAAVSIDGRFKARLPAGQG 437 (448)
T ss_pred -------CceEEEEEECCCCceEECcCCCC
Confidence 12357778888887777765443
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.42 E-value=5.5e-05 Score=67.23 Aligned_cols=175 Identities=17% Similarity=0.198 Sum_probs=99.0
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--c------cccccceEEEccCC-
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--D------GFYFANGVALSRDE- 145 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~------~~~~~~~i~~~~~~- 145 (287)
+..|.+|++.++|++||+. ...+.|+++++.++....+. . ......+++++|+-
T Consensus 29 L~~Pw~maflPDG~llVtE-----------------R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~ 91 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTE-----------------RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM 91 (454)
T ss_pred CCCceEEEEcCCCeEEEEE-----------------ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence 5689999999999999973 11478999987644332221 1 12334678998763
Q ss_pred -----CEEEEEeCC---------CCEEEEEEecC--CCCcceeEEeccCCC----CCcceeeCCCCCEEEEEeccchhH-
Q 023085 146 -----DYVVVCESW---------KFRCRKYWLKG--ERKGKLETFAENLPG----APDNINLAPDGTFWIAIIKLDARR- 204 (287)
Q Consensus 146 -----~~l~v~~~~---------~~~l~~~~~~~--~~~~~~~~~~~~~~~----~~~~i~~d~~G~lwv~~~~~~~~~- 204 (287)
+.+|++.+. ..+|.++.++. ..+...+.+....+. .-..|++++||+||+++.......
T Consensus 92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~ 171 (454)
T TIGR03606 92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQG 171 (454)
T ss_pred ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCc
Confidence 578988532 45798988753 223333333322221 123488999999999997632100
Q ss_pred ----HHHhhcc-hhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-----------EEEECCCCccccceEEEEEe-
Q 023085 205 ----MKILNSS-KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----------RNLVDPTGQLMSFVTSGLQV- 267 (287)
Q Consensus 205 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~- 267 (287)
..-.++. |....+..+ . ...-.|+|.|++++|+.- +.|+. | ..++..++.+
T Consensus 172 ~n~~~~~~aQ~~~~~~~~~~~---d-----~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~--G--~RNp~Gla~dp 239 (454)
T TIGR03606 172 ANFFLPNQAQHTPTQQELNGK---D-----YHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY--G--HRNPQGLAFTP 239 (454)
T ss_pred ccccCcchhcccccccccccc---C-----cccCceEEEEEcCCCCCCCCCCccCCCcceEEEE--e--ccccceeEECC
Confidence 0000000 000000000 0 012357999999998631 22221 2 2345666665
Q ss_pred CCEEEEEecCC
Q 023085 268 DNHLYVISLTS 278 (287)
Q Consensus 268 ~g~l~i~~~~~ 278 (287)
+|+||++....
T Consensus 240 ~G~Lw~~e~Gp 250 (454)
T TIGR03606 240 DGTLYASEQGP 250 (454)
T ss_pred CCCEEEEecCC
Confidence 79999988754
No 45
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.41 E-value=0.00036 Score=62.59 Aligned_cols=196 Identities=15% Similarity=0.191 Sum_probs=109.5
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+. ...|+.++ +++...+........ ..++.|||+ |+++... ..|+.++ ..+ .+.+...
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 282 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS 282 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC
Confidence 3567 4555552 23588888 555555543333334 678899995 5554322 2488888 445 5554321
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|+ |+++. . ..+...||.++..+++.+.+...........++|||+.+
T Consensus 283 ~-----~~~~~~~wSpDG~~l~f~s-~--------------~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 283 S-----GIDTEPFFSPDGRSIYFTS-D--------------RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred C-----CCCcCeEEcCCCCEEEEEe-c--------------CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEE
Confidence 1 1223456888886 44431 1 012346888887666655543222223356799999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF 225 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (287)
+++...+ ..|+.++.++++ ...+... .......+.++|+ |+.++..
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~-------------------------- 391 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQ-------------------------- 391 (427)
T ss_pred EEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEec--------------------------
Confidence 7765433 258888875432 2222211 1234567888886 4444433
Q ss_pred cccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 226 SQFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
.....++.++.+|+....+..+.|
T Consensus 392 ------~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 392 ------GGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred ------CCCEEEEEEECCCCceEEeecCCC
Confidence 112467777888877776665444
No 46
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.39 E-value=0.0004 Score=63.60 Aligned_cols=173 Identities=17% Similarity=0.270 Sum_probs=109.7
Q ss_pred CCCCc-EEEEecCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGV-IYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~ 73 (287)
.+||- |-.|..+|.|-.|| .. -+..+.++..... ++.+...|+..++..-.| +-..| ... ++++.. +
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~----P 433 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS----P 433 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccceeeeecC----C
Confidence 46774 44555889999999 32 3444555444444 788889998888765545 55555 332 444421 2
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc-ccceEEEccCCCEEEEEe
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCE 152 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~l~v~~ 152 (287)
......++++|+.|.|.++.+. ..-.++.++.++|++.-+..+-. ...+++|+|++. +.++.
T Consensus 434 ~p~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~ 496 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASG 496 (893)
T ss_pred CceeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEec
Confidence 2345578999999998885322 22357888888898765554443 346889999998 55555
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
++...+.+|++-.. .++.+.+. ......++++.|+| .|-|++..
T Consensus 497 SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred cccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEec
Confidence 67788988887432 12233321 11235568888888 58888876
No 47
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.39 E-value=1.8e-05 Score=68.29 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeec-------cccccceEEEccC---
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD-------GFYFANGVALSRD--- 144 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~-------~~~~~~~i~~~~~--- 144 (287)
..|.+|++.++|++||++ ..|.|++++.+ +.. ..+.. ......+++++|+
T Consensus 2 ~~P~~~a~~pdG~l~v~e------------------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~ 62 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAE------------------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS 62 (331)
T ss_dssp SSEEEEEEETTSCEEEEE------------------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred CCceEEEEeCCCcEEEEe------------------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence 468899999999999963 35789999844 444 22211 1234568899984
Q ss_pred CCEEEEEeCCC--------CEEEEEEecCC--CCcceeEEeccCC----C--CCcceeeCCCCCEEEEEeccchhHHHHh
Q 023085 145 EDYVVVCESWK--------FRCRKYWLKGE--RKGKLETFAENLP----G--APDNINLAPDGTFWIAIIKLDARRMKIL 208 (287)
Q Consensus 145 ~~~l~v~~~~~--------~~l~~~~~~~~--~~~~~~~~~~~~~----~--~~~~i~~d~~G~lwv~~~~~~~~~~~~~ 208 (287)
...+|++.+.. .+|.++..+.. .....+.+....+ . ....|++++||.||++.....+. -.
T Consensus 63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~ 139 (331)
T PF07995_consen 63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN 139 (331)
T ss_dssp C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence 46799888732 47888887644 2233333332211 1 23459999999999999774330 00
Q ss_pred hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE-------------EEEECCCCccccceEEEEEe-C-CEEEE
Q 023085 209 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-------------RNLVDPTGQLMSFVTSGLQV-D-NHLYV 273 (287)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~-~-g~l~i 273 (287)
++.+ ....+.|.|++++|+.. +.|.. | +.++..++++ . |+||+
T Consensus 140 ~~~~------------------~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~--G--lRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 140 AQDP------------------NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAY--G--LRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp GCST------------------TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEE
T ss_pred cccc------------------ccccceEEEecccCcCCCCCccccCCCceEEEEEe--C--CCccccEEEECCCCcEEE
Confidence 1110 22257899999998631 22221 2 3466788887 4 89999
Q ss_pred EecCCC
Q 023085 274 ISLTSN 279 (287)
Q Consensus 274 ~~~~~~ 279 (287)
+....+
T Consensus 198 ~d~G~~ 203 (331)
T PF07995_consen 198 ADNGPD 203 (331)
T ss_dssp EEE-SS
T ss_pred EccCCC
Confidence 987643
No 48
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.001 Score=59.74 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=86.1
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.- ..+.... .+.....+.|||+ |.+.... ..|+.++ .+| .+.+.... .....+++.+|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-----~~~~~~~~SPD 253 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-----RHNGAPAFSPD 253 (429)
T ss_pred eEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-----CCcCCeEECCC
Confidence 455555 4432 2332222 2222778899996 4333222 3588888 566 55553221 12345788999
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|+ |.++.. ..+...||.+|.++++...+...........|+|||+.|+++.... ..|+.+++
T Consensus 254 G~~La~~~~---------------~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~ 318 (429)
T PRK03629 254 GSKLAFALS---------------KTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI 318 (429)
T ss_pred CCEEEEEEc---------------CCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence 86 444311 1122369999988787776654433445678999999776554332 36888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCEE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTFW 194 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lw 194 (287)
++.. .+.+. ...+......+.+||+..
T Consensus 319 ~~g~---~~~lt-~~~~~~~~~~~SpDG~~I 345 (429)
T PRK03629 319 NGGA---PQRIT-WEGSQNQDADVSSDGKFM 345 (429)
T ss_pred CCCC---eEEee-cCCCCccCEEECCCCCEE
Confidence 6432 22221 111223456778888643
No 49
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.38 E-value=2.7e-06 Score=57.49 Aligned_cols=83 Identities=33% Similarity=0.464 Sum_probs=59.0
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
+|+.-...++|+|+.+.-........|...+...+.|..+|++ +.+.++..+..||||.++|+++.|||++.....|.
T Consensus 2 DIvavG~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~ 79 (86)
T PF01731_consen 2 DIVAVGPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHSIH 79 (86)
T ss_pred CEEEECcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEE
Confidence 4555556688888665311111111233334456788889874 57778888999999999999999999999999999
Q ss_pred EEEec
Q 023085 160 KYWLK 164 (287)
Q Consensus 160 ~~~~~ 164 (287)
.|...
T Consensus 80 vy~~~ 84 (86)
T PF01731_consen 80 VYKRH 84 (86)
T ss_pred EEEec
Confidence 98753
No 50
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.37 E-value=0.00064 Score=55.57 Aligned_cols=169 Identities=16% Similarity=0.162 Sum_probs=92.3
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeec-CCcccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV-NGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~-~~~~~~ 76 (287)
.+|.+|+++.++.|+.++ +|+...-........ ....-.++++++++....++.++ .+| ........ ......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 367899999999999999 676543333322222 33345578899988656799999 888 22211111 111122
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-----------cceEEEccCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-----------ANGVALSRDE 145 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----------~~~i~~~~~~ 145 (287)
......++ ++.+++.. ..+.|+.+|+++|+.......... ..+-.+..++
T Consensus 114 ~~~~~~~~-~~~~~~~~------------------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (238)
T PF13360_consen 114 SSSSPAVD-GDRLYVGT------------------SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG 174 (238)
T ss_dssp --SEEEEE-TTEEEEEE------------------TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT
T ss_pred cccCceEe-cCEEEEEe------------------ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC
Confidence 22333344 45566642 356899999998886443221110 1122222344
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
.+|++...+ ++..+|...++ ..+... ...+..+..-.++.||+++.
T Consensus 175 -~v~~~~~~g-~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~ 220 (238)
T PF13360_consen 175 -RVYVSSGDG-RVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSS 220 (238)
T ss_dssp -EEEEECCTS-SEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEET
T ss_pred -EEEEEcCCC-eEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeC
Confidence 688887544 46666765432 123212 22233334455778999983
No 51
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.36 E-value=0.00052 Score=60.85 Aligned_cols=214 Identities=16% Similarity=0.191 Sum_probs=118.4
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCCcc------ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeee-cC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT------LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY-VN 71 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~------~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~-~~ 71 (287)
++.+++++.+|.|+.++ +|+........ .+ ....++. ++.+++++....++.++ .+| .-..... ..
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 57889998889999999 67654322211 11 1022232 46788887666688888 777 2221110 00
Q ss_pred C-cc---cccc-ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCC
Q 023085 72 G-SK---LRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 72 ~-~~---~~~~-~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 146 (287)
+ .. +..+ ...++ .++.+|++. ..+.++.+|+.+|+...... ...+..+++ .++
T Consensus 238 ~~~~~~~~~~~~~sP~v-~~~~vy~~~------------------~~g~l~ald~~tG~~~W~~~-~~~~~~~~~--~~~ 295 (394)
T PRK11138 238 GATEIDRLVDVDTTPVV-VGGVVYALA------------------YNGNLVALDLRSGQIVWKRE-YGSVNDFAV--DGG 295 (394)
T ss_pred CccchhcccccCCCcEE-ECCEEEEEE------------------cCCeEEEEECCCCCEEEeec-CCCccCcEE--ECC
Confidence 0 00 0000 11112 257788852 34689999998887654322 222223333 355
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEecc-CC-CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcc
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL 224 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (287)
.+|+... .+.+++++.++++. .+... .. ......++ .+|.||+++..
T Consensus 296 ~vy~~~~-~g~l~ald~~tG~~----~W~~~~~~~~~~~sp~v-~~g~l~v~~~~------------------------- 344 (394)
T PRK11138 296 RIYLVDQ-NDRVYALDTRGGVE----LWSQSDLLHRLLTAPVL-YNGYLVVGDSE------------------------- 344 (394)
T ss_pred EEEEEcC-CCeEEEEECCCCcE----EEcccccCCCcccCCEE-ECCEEEEEeCC-------------------------
Confidence 6888874 57899999764321 11111 00 01112222 36789998875
Q ss_pred ccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 225 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|+.+|+ +|+.++.+....+. ..+.....+++||+++..| .|..|++
T Consensus 345 ----------G~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~l~v~t~~G-~l~~~~~ 393 (394)
T PRK11138 345 ----------GYLHWINREDGRFVAQQKVDSSG---FLSEPVVADDKLLIQARDG-TVYAITR 393 (394)
T ss_pred ----------CEEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCEEEEEeCCc-eEEEEeC
Confidence 57888886 58888877653221 2233445688999998654 5555543
No 52
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.36 E-value=0.00041 Score=61.82 Aligned_cols=164 Identities=13% Similarity=0.120 Sum_probs=90.4
Q ss_pred EEEeeCCccccCeEECCCCcEEEEeCC-CceEEEcc-CC-cEEEeeec---CCccccccceEEEcCC-------CcEEEE
Q 023085 26 NWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLSYV---NGSKLRFANDVVEASD-------GSLYFT 92 (287)
Q Consensus 26 ~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~-~g-~~~~~~~~---~~~~~~~~~~l~~d~~-------g~l~v~ 92 (287)
.+...-..|+ +|++.+||++||++.. ..|++++. ++ .+.+.... .......+.+|+++++ +.||++
T Consensus 24 ~va~GL~~Pw-~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPW-ALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCce-EEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 3444456788 9999999999999863 56888873 44 33332111 1112345678888754 368886
Q ss_pred cCCCCCCCcceeeeeeccCCCceEEEEeCCC--Cee---EEeeccc-----cccceEEEccCCCEEEEEeCC--------
Q 023085 93 VSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NIT---TLVADGF-----YFANGVALSRDEDYVVVCESW-------- 154 (287)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~---~~~~~~~-----~~~~~i~~~~~~~~l~v~~~~-------- 154 (287)
-+...-+.. ......|.|+.... ..+ +.+.... .....|+|+|||. ||++--.
T Consensus 103 yt~~~~~~~--------~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n 173 (454)
T TIGR03606 103 YTYKNGDKE--------LPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGAN 173 (454)
T ss_pred EeccCCCCC--------ccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCccc
Confidence 322100000 00123576665321 111 1111111 1234688999997 8885422
Q ss_pred ------------------------CCEEEEEEecCCC-----C---cceeEEeccCCCCCcceeeCCCCCEEEEEecc
Q 023085 155 ------------------------KFRCRKYWLKGER-----K---GKLETFAENLPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 155 ------------------------~~~l~~~~~~~~~-----~---~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.++|+|++.++.- + ...+.+.-.. -.|-++++|++|.||++.+..
T Consensus 174 ~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~-RNp~Gla~dp~G~Lw~~e~Gp 250 (454)
T TIGR03606 174 FFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGH-RNPQGLAFTPDGTLYASEQGP 250 (454)
T ss_pred ccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEec-cccceeEECCCCCEEEEecCC
Confidence 1267888876420 0 0122333111 147899999999999999773
No 53
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00053 Score=61.52 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=88.7
Q ss_pred CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcC
Q 023085 14 GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS 85 (287)
Q Consensus 14 g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~ 85 (287)
..|+.++ +|+.+.+........ .+.+.|||+ |+++.... .|+.++ .++ .+.+.... .......+.+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-----~~~~~~~wSP 296 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-----SNNTEPTWFP 296 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-----CCcCceEECC
Confidence 3566666 444444433333333 678899996 55543222 488888 666 66654321 1335567888
Q ss_pred CCc-EEEE-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEE
Q 023085 86 DGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKY 161 (287)
Q Consensus 86 ~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~ 161 (287)
+|+ |.++ +.. ....||.++..+++...+...........++|||+.++++...+ ..|+.+
T Consensus 297 DG~~I~f~s~~~----------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 297 DSQNLAYTSDQA----------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred CCCEEEEEeCCC----------------CCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 886 4332 211 22479999988776665543333344577899999887765433 357778
Q ss_pred EecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEE
Q 023085 162 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~ 197 (287)
+++++. .+.+... .......+.+||+..+..
T Consensus 361 dl~~g~---~~~Lt~~--~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 361 DLATGG---VQVLTDT--FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred ECCCCC---eEEeCCC--CCCCCceECCCCCEEEEE
Confidence 875432 2222211 112346677888644433
No 54
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.34 E-value=0.00054 Score=61.47 Aligned_cols=197 Identities=16% Similarity=0.175 Sum_probs=108.8
Q ss_pred CCCC-cEEEEe-c--CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~-~--~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|.+.+ . ...|+.++ +++.+.+........ ...+.|||+ |+++.... .|++++ .++ .+.+...
T Consensus 207 SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 207 SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC
Confidence 3566 344433 2 23577777 455554443333333 577899995 55443222 488888 666 6655332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. ++++.. ..+...|+.++..+++...+...........++|+++.+
T Consensus 286 ~-----~~~~~~~~spDg~~i~f~s~---------------~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 286 P-----AIDTEPFWGKDGRTLYFTSD---------------RGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTL 345 (430)
T ss_pred C-----CCcCCeEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 1 1223456777875 555311 112347999998777766554322223345789999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
++..... ..|+.+|++++. .+.+... .......+.++|+..+-+..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~---~~~lt~~--~~~~~p~~spdg~~i~~~~~--------------------------- 393 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGS---VRILTDT--SLDESPSVAPNGTMLIYATR--------------------------- 393 (430)
T ss_pred EEEEccCCceEEEEEECCCCC---EEEccCC--CCCCCceECCCCCEEEEEEe---------------------------
Confidence 8876543 357888876432 2222211 12234567888864443332
Q ss_pred ccccCCCceEEEEECCCCcEEEEEECCCC
Q 023085 227 QFITLGGGAHLIHVAEDGTIIRNLVDPTG 255 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~~ 255 (287)
......|+.++.+|+....+..+.|
T Consensus 394 ----~~g~~~l~~~~~~g~~~~~l~~~~g 418 (430)
T PRK00178 394 ----QQGRGVLMLVSINGRVRLPLPTAQG 418 (430)
T ss_pred ----cCCceEEEEEECCCCceEECcCCCC
Confidence 1113467778888776666654444
No 55
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.33 E-value=4.3e-05 Score=60.68 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=87.4
Q ss_pred CCCCCcEEEEe----------cCCeEEEEE-CCceEEEEeeCCccccCeEECCCCc-EEEEeCC-Cce--EEEc-cCC-c
Q 023085 1 MDKNGVIYTAT----------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGL--HKVS-EDG-V 63 (287)
Q Consensus 1 ~d~~G~l~~~~----------~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~-~gi--~~~~-~~g-~ 63 (287)
+|++|+.|.|+ ..|.++++- .++.+.+...-..++ +++.|.|.. .|+.++. ..| +.+| ++| +
T Consensus 116 vdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~ 194 (310)
T KOG4499|consen 116 VDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDL 194 (310)
T ss_pred cCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCcccc
Confidence 57899999987 246666666 666666655556778 999998884 6777544 356 6666 777 3
Q ss_pred ---EEEeeecCCcc--ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccc
Q 023085 64 ---ENFLSYVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 137 (287)
Q Consensus 64 ---~~~~~~~~~~~--~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~ 137 (287)
..+.......+ ...|.++++|.+|.||++... .+.|+++||.+|++-. +--+.....
T Consensus 195 snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 195 SNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred cCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCceE
Confidence 23333333222 346889999999999997433 4689999999887532 222233445
Q ss_pred eEEEc-cCCCEEEEEeC
Q 023085 138 GVALS-RDEDYVVVCES 153 (287)
Q Consensus 138 ~i~~~-~~~~~l~v~~~ 153 (287)
..+|. +.-..+|++..
T Consensus 258 sccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTA 274 (310)
T ss_pred EEEecCCCccEEEEEeh
Confidence 55664 33345676653
No 56
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.00023 Score=59.55 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred CCCCCcEEEEec------CCeEEEEE-CCceEEEEe---eCCccccCeEECCCC-cEEEEeCC-----------------
Q 023085 1 MDKNGVIYTATR------DGWIKRLQ-DGTWVNWKF---IDSQTLVGLTSTKEG-HLIICDNA----------------- 52 (287)
Q Consensus 1 ~d~~G~l~~~~~------~g~i~~~~-~~~~~~~~~---~~~~~~~~i~~d~dg-~l~v~~~~----------------- 52 (287)
|.+||++.++|+ .|.|-.|+ .....+..+ ..-.|. .+.+.+|| .|.|++.+
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 467897666662 47888888 544444433 344677 89999999 78888622
Q ss_pred -CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE
Q 023085 53 -NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL 128 (287)
Q Consensus 53 -~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 128 (287)
..|.++| .+| +++. .........++..|+++.+|.+|++.. |..+.. ...--|...... +.+..
T Consensus 137 ~psL~~ld~~sG~ll~q~-~Lp~~~~~lSiRHLa~~~~G~V~~a~Q--------~qg~~~--~~~PLva~~~~g-~~~~~ 204 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQV-ELPPDLHQLSIRHLAVDGDGTVAFAMQ--------YQGDPG--DAPPLVALHRRG-GALRL 204 (305)
T ss_pred CCceEEEecCCCceeeee-ecCccccccceeeEEecCCCcEEEEEe--------cCCCCC--ccCCeEEEEcCC-Cccee
Confidence 1255565 555 3332 111122335788899999999999622 111100 011234444433 32333
Q ss_pred eecc-------ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 129 VADG-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 129 ~~~~-------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..+ -.+.-.|+++.+++.+.+++..++++..||.+...+...... + ...+++...++ |+.+..
T Consensus 205 ~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l----~-D~cGva~~~~~--f~~ssG 275 (305)
T PF07433_consen 205 LPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL----P-DACGVAPTDDG--FLVSSG 275 (305)
T ss_pred ccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc----C-ceeeeeecCCc--eEEeCC
Confidence 3221 123456889999998889888889999998654332221111 1 24467776666 444443
No 57
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00071 Score=60.87 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=96.4
Q ss_pred CCCCc-EEEEe---cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~---~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+||. |.+.+ ....|+.++ +++.+.+........ ...+.|||+ |.++... ..|+.++ .++ .+.+...
T Consensus 210 SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 210 SPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC
Confidence 35663 54444 235688888 555554443333334 678899996 5444322 2488888 666 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|+ |.++.. ..+...||.++..+++.+.+...........++|||+.|
T Consensus 289 ~-----~~~~~~~~spDG~~i~f~s~---------------~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 289 P-----AIDTSPSYSPDGSQIVFESD---------------RSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred C-----CccCceeEcCCCCEEEEEEC---------------CCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 1 1223457788886 444311 112347999998777666654332233456799999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEE
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
++..... .+|+.++.++.. .+.+. . ......+.+.+||+ |+.++
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~---~~~lt-~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG---ERILT-S-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc---eEecc-C-CCCCCCCeECCCCCEEEEEE
Confidence 8776433 367788865422 22221 1 11345677888886 34433
No 58
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0022 Score=57.91 Aligned_cols=137 Identities=12% Similarity=0.100 Sum_probs=79.0
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
...++|||+ |+++... ..|++++ .+| .+.+... .+ .....++.++|. |+++..
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~--------------- 281 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLS--------------- 281 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEe---------------
Confidence 677899996 5444322 2488888 566 5555322 11 223567888886 555311
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
..+...||.++.++++.+.+..........+|+||++.++++... ...|+++++++++. .... .........++
T Consensus 282 ~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt-~~g~~~~~~~~ 357 (448)
T PRK04792 282 KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLT-FEGEQNLGGSI 357 (448)
T ss_pred CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEe-cCCCCCcCeeE
Confidence 112346999998878776655433334557899999988776643 34688888764322 2111 11112234577
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.+||+ |+++.
T Consensus 358 SpDG~~l~~~~ 368 (448)
T PRK04792 358 TPDGRSMIMVN 368 (448)
T ss_pred CCCCCEEEEEE
Confidence 88885 44433
No 59
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.002 Score=57.75 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=83.4
Q ss_pred eEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+.++ +|.. ..+.... .+....++.|||+ |.++.... .|+.++ .+| ...+.... ......++.++
T Consensus 177 ~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-----g~~~~~~~SPD 250 (427)
T PRK02889 177 QLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-----GSNSAPAWSPD 250 (427)
T ss_pred EEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-----CCccceEECCC
Confidence 566666 4433 2222222 2222678899995 54544332 488888 667 55553221 12345778888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~ 163 (287)
|. |.++-. ..+...||.++..++..+.+...........|+|||+.++++... ...|+.++.
T Consensus 251 G~~la~~~~---------------~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 251 GRTLAVALS---------------RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred CCEEEEEEc---------------cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence 85 444311 112346999988766665554332233456799999987766532 335777765
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++.. .+... ..........+.++|+.
T Consensus 316 ~~g~---~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 316 SGGA---AQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred CCCc---eEEEe-cCCCCcCceEECCCCCE
Confidence 4432 11111 11112334667888863
No 60
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.23 E-value=0.0015 Score=58.64 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=79.4
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
..++.+||+ |+.+... ..|++++ .+| .+.+... .+ ......++++|. |.++..
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s--------------- 267 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLS--------------- 267 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEe---------------
Confidence 677889996 5554433 2488888 666 5554322 11 223567888886 544311
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
..+...|+.++..+++...+...........|+|||+.++++.... ..|+.++.++.+ .+... .........++
T Consensus 268 ~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLT-FQGNYNARASV 343 (433)
T ss_pred CCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEee-cCCCCccCEEE
Confidence 1123469999998887766544333334578999999877765332 358888875432 21111 11123345778
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.++|+ |++++
T Consensus 344 SpDG~~Ia~~~ 354 (433)
T PRK04922 344 SPDGKKIAMVH 354 (433)
T ss_pred CCCCCEEEEEE
Confidence 88885 44433
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.22 E-value=0.0013 Score=53.74 Aligned_cols=207 Identities=16% Similarity=0.159 Sum_probs=108.7
Q ss_pred CCeEEEEE--CCceEEEEeeCCccccC-e--EECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccceEEEcCC
Q 023085 13 DGWIKRLQ--DGTWVNWKFIDSQTLVG-L--TSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 13 ~g~i~~~~--~~~~~~~~~~~~~~~~~-i--~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+|.|..+| +|+. .|.........+ . ....++++|+++..+.|+.++ .+|.........+ +...+ . .-.+
T Consensus 2 ~g~l~~~d~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~--~-~~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKE-LWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGA--P-VVDG 76 (238)
T ss_dssp TSEEEEEETTTTEE-EEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSG--E-EEET
T ss_pred CCEEEEEECCCCCE-EEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccce--e-eecc
Confidence 46677777 4443 333221111112 2 444678999998778899999 6882222222111 11121 2 3335
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccc----cccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~----~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
+.+++.. ..+.|+.+|..+|++.... ... ..........+++.+|+... ++.|+.+
T Consensus 77 ~~v~v~~------------------~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~ 137 (238)
T PF13360_consen 77 GRVYVGT------------------SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVAL 137 (238)
T ss_dssp TEEEEEE------------------TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEE
T ss_pred ccccccc------------------ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEE
Confidence 7787742 3458999998888865542 111 11111222233666777764 6789999
Q ss_pred EecCCCCcceeEEeccCCC-C--------CcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCC
Q 023085 162 WLKGERKGKLETFAENLPG-A--------PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG 232 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~--------~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (287)
|+++++....... ..... . ...+.++ ++.++++...
T Consensus 138 d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--------------------------------- 182 (238)
T PF13360_consen 138 DPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-DGRVYVSSGD--------------------------------- 182 (238)
T ss_dssp ETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-TTEEEEECCT---------------------------------
T ss_pred ecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-CCEEEEEcCC---------------------------------
Confidence 9764322111111 11000 0 0122233 4578888876
Q ss_pred CceEEEEECCC-CcEEEEEECCCCccccceEE-EEEeCCEEEEEecCCCeEEEEeCC
Q 023085 233 GGAHLIHVAED-GTIIRNLVDPTGQLMSFVTS-GLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 233 ~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
+.++.+|.. |+.++... ..+ ... ....++.||+++ ..+.|..+|+.
T Consensus 183 --g~~~~~d~~tg~~~w~~~-~~~-----~~~~~~~~~~~l~~~~-~~~~l~~~d~~ 230 (238)
T PF13360_consen 183 --GRVVAVDLATGEKLWSKP-ISG-----IYSLPSVDGGTLYVTS-SDGRLYALDLK 230 (238)
T ss_dssp --SSEEEEETTTTEEEEEEC-SS------ECECEECCCTEEEEEE-TTTEEEEEETT
T ss_pred --CeEEEEECCCCCEEEEec-CCC-----ccCCceeeCCEEEEEe-CCCEEEEEECC
Confidence 235666755 55454222 221 333 455689999999 78899998863
No 62
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.21 E-value=0.0024 Score=56.98 Aligned_cols=172 Identities=13% Similarity=0.122 Sum_probs=95.3
Q ss_pred CCCC-cEEEEecC---CeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeee
Q 023085 2 DKNG-VIYTATRD---GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G-~l~~~~~~---g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~ 69 (287)
.+|| .|++.+.. ..|+.++ +++............ .+++.+||+ |+++... ..|+.++ .++ .+.+...
T Consensus 198 Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 198 SPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC
Confidence 3556 35554422 4677787 455555444333344 678899995 6555332 2488888 556 5554321
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. |.++... .....||.++..+++...+...........++|+++.+
T Consensus 277 ~-----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 277 P-----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred C-----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEE
Confidence 1 1122345667775 4332110 12347999998777766554444445567899999988
Q ss_pred EEEeCCC--CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEec
Q 023085 149 VVCESWK--FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~ 199 (287)
+++.... .+|+.+++++.. .+.+.. ........+.++|+ |++++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~---~~~l~~--~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGG---ERVLTD--TGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred EEEEccCCceEEEEEeCCCCC---eEEccC--CCCCCCceECCCCCEEEEEEeC
Confidence 8876543 267888865421 222211 11233456777775 5444443
No 63
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.18 E-value=0.0042 Score=55.48 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=84.2
Q ss_pred eEEEEE-CCceEEEEeeCCccccCeEECCCCc--EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~--l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+|+..+ +|.-.+...... +.......|||+ +++.... ..|++++ .+| .+.+... .+ ......+.+|
T Consensus 170 ~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SPD 243 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSKD 243 (419)
T ss_pred eEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECCC
Confidence 455555 444333222222 222567789995 5655433 3499999 777 6666432 11 1123457788
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|. +.++.. ......||.++..+++.+.+...........|+|||+.|+++.... ..|+++++
T Consensus 244 G~~la~~~~---------------~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl 308 (419)
T PRK04043 244 GSKLLLTMA---------------PKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL 308 (419)
T ss_pred CCEEEEEEc---------------cCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEEC
Confidence 84 544321 1234579999987777766543322223346999999888876433 36888888
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCE
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTF 193 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l 193 (287)
++++.. ..... +. .+..++++|+.
T Consensus 309 ~~g~~~---rlt~~--g~-~~~~~SPDG~~ 332 (419)
T PRK04043 309 NSGSVE---QVVFH--GK-NNSSVSTYKNY 332 (419)
T ss_pred CCCCeE---eCccC--CC-cCceECCCCCE
Confidence 654321 11111 11 13477888863
No 64
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.18 E-value=0.0013 Score=54.61 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=126.9
Q ss_pred CccccCeEECCCCcEEEEeCCCc-eEEEccC-----C-cEEEeeecC---C-ccccccceEEEcCCCcEEEEcCCCCCCC
Q 023085 32 SQTLVGLTSTKEGHLIICDNANG-LHKVSED-----G-VENFLSYVN---G-SKLRFANDVVEASDGSLYFTVSSSKYLP 100 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~~g-i~~~~~~-----g-~~~~~~~~~---~-~~~~~~~~l~~d~~g~l~v~~~~~~~~~ 100 (287)
.+++ +|++.|.+-+||++...+ ...|+-. + ..++.-... + .....|+++++..-..+-++... +-+.
T Consensus 23 ~N~W-Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g-~~~~ 100 (336)
T TIGR03118 23 RNAW-GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEG-ITGP 100 (336)
T ss_pred cccc-eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCC-cccc
Confidence 4788 999999999999986655 3444422 4 222222211 1 12357888888754444343211 1110
Q ss_pred cceeeeeeccCCCceEEEEeCCCCee------EEeecc--ccccceEEEcc--CCCEEEEEeCCCCEEEEEEecCCCCcc
Q 023085 101 HEYCLDILEGKPHGQLLKYDPSSNIT------TLVADG--FYFANGVALSR--DEDYVVVCESWKFRCRKYWLKGERKGK 170 (287)
Q Consensus 101 ~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~--~~~~~~i~~~~--~~~~l~v~~~~~~~l~~~~~~~~~~~~ 170 (287)
..+++.++.+.|.-+.+.-+.. ..+... ..--.|+++.. .+..||.++...++|-+||-.=.....
T Consensus 101 ----a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~ 176 (336)
T TIGR03118 101 ----SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPL 176 (336)
T ss_pred ----eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccC
Confidence 1123344556676666532222 111111 11124677653 367899999999999999843111111
Q ss_pred eeEEecc-CC--CCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEE
Q 023085 171 LETFAEN-LP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII 247 (287)
Q Consensus 171 ~~~~~~~-~~--~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~ 247 (287)
...|... .+ -.|-+|.- -.++|||+-.... ++.... ......+-|-.||++|+.+
T Consensus 177 ~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd--------------------~~~~d~-v~G~G~G~VdvFd~~G~l~ 234 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQD--------------------ADRNDE-VAGAGLGYVNVFTLNGQLL 234 (336)
T ss_pred CCCccCCCCCCCCCCcceEE-ECCeEEEEEEecC--------------------Cccccc-ccCCCcceEEEEcCCCcEE
Confidence 1122211 11 13555532 3578999986521 000000 0134456889999999999
Q ss_pred EEEECCCCccccceEEEEEe-------CCEEEEEecCCCeEEEEeC
Q 023085 248 RNLVDPTGQLMSFVTSGLQV-------DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~-------~g~l~i~~~~~~~i~~~~~ 286 (287)
+.+.+ +..++.+.++... .|.|.||++...+|-.||-
T Consensus 235 ~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 235 RRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred EEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 99975 3346777666652 3889999999999999984
No 65
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.16 E-value=0.0018 Score=56.02 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=70.4
Q ss_pred cEEEEeCC-----CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCce
Q 023085 45 HLIICDNA-----NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 115 (287)
Q Consensus 45 ~l~v~~~~-----~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
++||.+.. +.+.++| .++ +..+. . + ..|..+ +.++| .+|+++...+.+. -+.....
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~-~--G---~~P~~~-~spDg~~lyva~~~~~R~~--------~G~~~d~ 78 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGRVLGMTD-G--G---FLPNPV-VASDGSFFAHASTVYSRIA--------RGKRTDY 78 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCEEEEEEE-c--c---CCCcee-ECCCCCEEEEEeccccccc--------cCCCCCE
Confidence 57777654 4688898 555 33332 1 2 256665 88876 6899876432211 1223467
Q ss_pred EEEEeCCCCeeEEeec--------cccccceEEEccCCCEEEEEeCC-CCEEEEEEecCC
Q 023085 116 LLKYDPSSNITTLVAD--------GFYFANGVALSRDEDYVVVCESW-KFRCRKYWLKGE 166 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~l~v~~~~-~~~l~~~~~~~~ 166 (287)
|..+|+.+.+...-.. ....++.++++|||+.|||++.. ...+.++|+..+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCC
Confidence 8899998877543222 13456689999999999999966 788999998653
No 66
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.0035 Score=55.96 Aligned_cols=195 Identities=11% Similarity=0.058 Sum_probs=113.6
Q ss_pred CCCCc--EEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEee
Q 023085 2 DKNGV--IYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~--l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~ 68 (287)
.+||. +++.+. ...|+.++ +++.+.+....+... ...+.|||+ |.++... ..|+.++ .++ .+++..
T Consensus 196 SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~ 274 (419)
T PRK04043 196 ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITN 274 (419)
T ss_pred CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEccc
Confidence 35663 665552 35688888 666666654433333 456789994 5555322 3589998 666 666643
Q ss_pred ecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCE
Q 023085 69 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 147 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 147 (287)
... ......+.+||+ |+++... .+...||.++..+++.+.+...... + ..++|||+.
T Consensus 275 ~~~-----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~~-~-~~~SPDG~~ 332 (419)
T PRK04043 275 YPG-----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGKN-N-SSVSTYKNY 332 (419)
T ss_pred CCC-----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCCc-C-ceECCCCCE
Confidence 211 111235788884 6664211 1234799999988887665432211 2 478999998
Q ss_pred EEEEeCCC--------CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHH
Q 023085 148 VVVCESWK--------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVL 218 (287)
Q Consensus 148 l~v~~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
+.++.... ..|+.++++++. .+.+.. .+......+.+||+ |.+++..
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~--~~~~~~p~~SPDG~~I~f~~~~------------------- 388 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTA--NGVNQFPRFSSDGGSIMFIKYL------------------- 388 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCC--CCCcCCeEECCCCCEEEEEEcc-------------------
Confidence 77665432 468888876532 222221 11223466788886 4444433
Q ss_pred HhCCccccccccCCCceEEEEECCCCcEEEEEECCCCc
Q 023085 219 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ 256 (287)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~ 256 (287)
.....|..++.+|+....+....|.
T Consensus 389 -------------~~~~~L~~~~l~g~~~~~l~~~~g~ 413 (419)
T PRK04043 389 -------------GNQSALGIIRLNYNKSFLFPLKVGK 413 (419)
T ss_pred -------------CCcEEEEEEecCCCeeEEeecCCCc
Confidence 1235688889899877777654443
No 67
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.13 E-value=2.8e-05 Score=66.23 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=91.1
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-----ccccccceEEEccCCCEEE
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-----DGFYFANGVALSRDEDYVV 149 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~l~ 149 (287)
..|-+|+++.+| +|||+|+. -+|+.+++..+..+.+. ..+.+.|++.++++| .+|
T Consensus 115 GRPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g-~vy 175 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEG-VVY 175 (376)
T ss_pred CCcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeecCceeEcCCC-eEE
Confidence 578899999987 99998755 47999998866544433 235667899999855 599
Q ss_pred EEeCCC-----------------CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcch
Q 023085 150 VCESWK-----------------FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 150 v~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
++++.. +|+.+||..++ ..+++...+ ..|+|+++.+|+...+.+.....++.+|+..-|
T Consensus 176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK---~~~VLld~L-~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~ 251 (376)
T KOG1520|consen 176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK---VTKVLLDGL-YFPNGLALSPDGSFVLVAETTTARIKRYWIKGP 251 (376)
T ss_pred EeccccccchhheEEeeecCCCccceEEecCccc---chhhhhhcc-cccccccCCCCCCEEEEEeeccceeeeeEecCC
Confidence 998743 36666665332 122222222 258999999999988888887778888888887
Q ss_pred hH--HHHHHh-CCcccccc
Q 023085 213 LI--KHVLAA-YPKLFSQF 228 (287)
Q Consensus 213 ~~--~~~~~~-~~~~~~~~ 228 (287)
.+ +.++.. +|+++..|
T Consensus 252 k~gt~EvFa~~LPG~PDNI 270 (376)
T KOG1520|consen 252 KAGTSEVFAEGLPGYPDNI 270 (376)
T ss_pred ccCchhhHhhcCCCCCcce
Confidence 64 335544 77777664
No 68
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.11 E-value=0.0012 Score=55.75 Aligned_cols=64 Identities=17% Similarity=0.339 Sum_probs=45.3
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCC-CcceeEEeccC--CCCCcceeeCC--CCCEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGER-KGKLETFAENL--PGAPDNINLAP--DGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~-~~~~~~~~~~~--~~~~~~i~~d~--~G~lwv~~~~ 199 (287)
...|++++++|. ||++....+.|.+++.+++- ..+.+.+.... --.|+++.++. +|.||+.+..
T Consensus 187 ~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 187 QSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 456888999775 99999999999999976531 12344444322 24799999999 9999999976
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.11 E-value=0.0031 Score=54.46 Aligned_cols=141 Identities=13% Similarity=0.167 Sum_probs=87.2
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
+.++...+.|..++.....+-+.|. ++| +...... .........++++||.|+.+ +
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgLifgt-----------------g 365 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGLIFGT-----------------G 365 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCceEEec-----------------c
Confidence 3377788999877776667777776 666 4444332 11234678899999999885 3
Q ss_pred CCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 111 KPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
..++.|-.||.+++. +..+.........|.|+..|-+|.++ ...+.+..||+.. ...++.+.....-....+.+|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~-add~~V~lwDLRK--l~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATA-ADDGSVKLWDLRK--LKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEE-ecCCeEEEEEehh--hcccceeeccccccceeEEEcC
Confidence 446667777776443 33344444455678898777544444 4455699999853 2334444321111256788999
Q ss_pred CCCEEEEEe
Q 023085 190 DGTFWIAII 198 (287)
Q Consensus 190 ~G~lwv~~~ 198 (287)
.|.+.+...
T Consensus 443 SGt~L~~~g 451 (506)
T KOG0289|consen 443 SGTYLGIAG 451 (506)
T ss_pred CCCeEEeec
Confidence 997555553
No 70
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.002 Score=57.91 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCCCc-EEEEec---CCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTATR---DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~~---~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~ 69 (287)
.+||. |.+.+. ...|+.++ +++.+.+....+... .+++.|||+ |.++.... .|+.++ .++ .+.+...
T Consensus 212 SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 290 (429)
T PRK01742 212 SPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSG 290 (429)
T ss_pred cCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccC
Confidence 35663 444442 23577777 454444443333333 678899996 55543222 377788 556 6555332
Q ss_pred cCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEE
Q 023085 70 VNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 148 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l 148 (287)
. .......+.++|. |+++.. ..+...||.++..++....+... . ....++|||+.+
T Consensus 291 ~-----~~~~~~~wSpDG~~i~f~s~---------------~~g~~~I~~~~~~~~~~~~l~~~-~--~~~~~SpDG~~i 347 (429)
T PRK01742 291 A-----GNNTEPSWSPDGQSILFTSD---------------RSGSPQVYRMSASGGGASLVGGR-G--YSAQISADGKTL 347 (429)
T ss_pred C-----CCcCCEEECCCCCEEEEEEC---------------CCCCceEEEEECCCCCeEEecCC-C--CCccCCCCCCEE
Confidence 1 1345678888987 444311 11234688888765555443221 1 335689999988
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++... ..++++|+.+++ ....... .......+.++|+..+.+.
T Consensus 348 a~~~~--~~i~~~Dl~~g~---~~~lt~~--~~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 348 VMING--DNVVKQDLTSGS---TEVLSST--FLDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEEcC--CCEEEEECCCCC---eEEecCC--CCCCCceECCCCCEEEEEE
Confidence 77753 568888875432 2222111 1123467888997655554
No 71
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.07 E-value=0.0072 Score=53.90 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=86.4
Q ss_pred eEEEEE-CCc-eEEEEeeCCccccCeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~-~~~-~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.|+..+ ++. .+.+........ ...+.+||+ |+++... ..|++++ .+| ...+... . ......++.++
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~----~~~~~~~~spD 244 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-P----GMNGAPAFSPD 244 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-C----CCccceEECCC
Confidence 466665 332 333333222233 667889996 4444322 2488888 667 5544321 1 12345678888
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEe
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWL 163 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~ 163 (287)
|. |+++... .....|+.++..+++...+...........++||++.|+++.... ..|+.++.
T Consensus 245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 85 5554211 123469999988776655543322233457889998777665332 36888887
Q ss_pred cCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEe
Q 023085 164 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++.+ ...+. .........++.++|+..+.+.
T Consensus 310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 310 DGGE---VRRLT-FRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCC---EEEee-cCCCCccCeEECCCCCEEEEEE
Confidence 5432 22221 1122345677888886444443
No 72
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.06 E-value=0.0033 Score=54.98 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=78.6
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEE
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW 194 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lw 194 (287)
.|-.++.++++++.+..++.....+..+++|+.+.+++. ...||.+|++++ +.+.......+...+++..+++ -|
T Consensus 383 ~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~ 457 (668)
T COG4946 383 KLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW 457 (668)
T ss_pred eEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence 577778787888888888888888999999998888764 567999998754 2333332233456666666665 56
Q ss_pred EEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEE
Q 023085 195 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 274 (287)
Q Consensus 195 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~ 274 (287)
++-.- |+.+ -+..|-.++.+|..+...+++.+ -....++-.+...||+-
T Consensus 458 iAYaf----------------------P~gy-------~tq~Iklydm~~~Kiy~vTT~ta--~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 458 IAYAF----------------------PEGY-------YTQSIKLYDMDGGKIYDVTTPTA--YDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEEec----------------------Ccce-------eeeeEEEEecCCCeEEEecCCcc--cccCcccCCCCcEEEEE
Confidence 66543 1110 02355566666655555565543 23333444445667766
Q ss_pred ecC
Q 023085 275 SLT 277 (287)
Q Consensus 275 ~~~ 277 (287)
+.+
T Consensus 507 s~R 509 (668)
T COG4946 507 SAR 509 (668)
T ss_pred ecc
Confidence 653
No 73
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.04 E-value=0.0062 Score=53.86 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=104.6
Q ss_pred CC-cEEEEecCCeEEEEE--CCceEEEE-e-eCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 4 NG-VIYTATRDGWIKRLQ--DGTWVNWK-F-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~~~~~~~~-~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
+| .||-++.+|.|..|+ .|..-++. . ..+... +++....+.|+...+..-+.+++ .++ .+...... ...
T Consensus 331 d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~---lg~ 406 (603)
T KOG0318|consen 331 DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVK---LGS 406 (603)
T ss_pred CCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcccccceee---cCC
Confidence 44 689999999999999 33322221 1 123334 78888888998888777788877 433 33221101 123
Q ss_pred ccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.|-++++.++|. +.++. ...|..+.-. +.+.... ....+..++++|++..+.|... .
T Consensus 407 QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~-~~~~~~~-~~y~~s~vAv~~~~~~vaVGG~-D 464 (603)
T KOG0318|consen 407 QPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQ-TKVSSIP-IGYESSAVAVSPDGSEVAVGGQ-D 464 (603)
T ss_pred CceeEEEcCCCCEEEEEe-------------------cCcEEEEecC-Ccceeec-cccccceEEEcCCCCEEEEecc-c
Confidence 567899998874 44432 2345555422 2232222 3446788999999997777654 5
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
++|+.|.+.+....+..... ...+.+..+++.+||.+..++..
T Consensus 465 gkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred ceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEecc
Confidence 67999999875432221111 23345788999999988888865
No 74
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.04 E-value=0.0089 Score=53.66 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=77.2
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
...+.|||+ |.++... ..|++++ .+| .+.+... . .......+.++|. |.++...
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~----g~~~~~~~SpDG~~la~~~~~-------------- 263 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E----GLNGAPAWSPDGSKLAFVLSK-------------- 263 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C----CCcCCeEECCCCCEEEEEEcc--------------
Confidence 667889995 5343322 2488888 666 5555322 1 1223467888886 4443111
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
.+...||.+|.++++.+.+...........|+||++.++++... ...|+.+++++++. +.+. ..........+
T Consensus 264 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~---~~lt-~~~~~~~~~~~ 338 (430)
T PRK00178 264 -DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA---ERVT-FVGNYNARPRL 338 (430)
T ss_pred -CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEee-cCCCCccceEE
Confidence 12346999999878776654433333456789999987776543 24688888754332 2221 11112234566
Q ss_pred CCCCC-EEEEE
Q 023085 188 APDGT-FWIAI 197 (287)
Q Consensus 188 d~~G~-lwv~~ 197 (287)
.++|+ |+++.
T Consensus 339 Spdg~~i~~~~ 349 (430)
T PRK00178 339 SADGKTLVMVH 349 (430)
T ss_pred CCCCCEEEEEE
Confidence 77775 44433
No 75
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0066 Score=54.94 Aligned_cols=139 Identities=17% Similarity=0.241 Sum_probs=86.5
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC---cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.+++.+||++.++... ..|.+++ +.. +..+. + ....++++++.++|++.++. .
T Consensus 208 ~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~----g-H~~~v~~~~f~p~g~~i~Sg-----------------s 265 (456)
T KOG0266|consen 208 DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK----G-HSTYVTSVAFSPDGNLLVSG-----------------S 265 (456)
T ss_pred eeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec----C-CCCceEEEEecCCCCEEEEe-----------------c
Confidence 8899999986666444 3455565 333 33332 1 23467899999999888863 3
Q ss_pred CCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCC-CCcceeeCC
Q 023085 112 PHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPG-APDNINLAP 189 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~d~ 189 (287)
.++.|..+|.++++.... ........+++++++++.++.+ +..+.|..||..+..+.-...+...... ....+.+++
T Consensus 266 ~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP 344 (456)
T ss_pred CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC
Confidence 356788888887775544 3444566788999999966666 5578899999865432201111111111 125567788
Q ss_pred CCC-EEEEEe
Q 023085 190 DGT-FWIAII 198 (287)
Q Consensus 190 ~G~-lwv~~~ 198 (287)
+|. ++++..
T Consensus 345 ~~~~ll~~~~ 354 (456)
T KOG0266|consen 345 NGKYLLSASL 354 (456)
T ss_pred CCcEEEEecC
Confidence 885 444443
No 76
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.96 E-value=0.00037 Score=64.52 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCccccCeEECCCC-cEEEEeCC-C--ceEEEccCC--cEEEeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcce
Q 023085 31 DSQTLVGLTSTKEG-HLIICDNA-N--GLHKVSEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEY 103 (287)
Q Consensus 31 ~~~~~~~i~~d~dg-~l~v~~~~-~--gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~ 103 (287)
...|. +|++|.-+ ++|.++.- . ++..+ +| .+.+... .+-.|.+|++|+ .|+||.+|..
T Consensus 1067 L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~L--dG~~rkvLf~t----dLVNPR~iv~D~~rgnLYwtDWn-------- 1131 (1289)
T KOG1214|consen 1067 LISPE-GIAVDHIRRNMYWTDSVLDKIEVALL--DGSERKVLFYT----DLVNPRAIVVDPIRGNLYWTDWN-------- 1131 (1289)
T ss_pred CCCcc-ceeeeeccceeeeeccccchhheeec--CCceeeEEEee----cccCcceEEeecccCceeecccc--------
Confidence 35678 99999877 47777643 2 23333 45 3334332 245788999997 5799998744
Q ss_pred eeeeeccCCCceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 104 CLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
.+ .-.|-+.+++ |+..+ +...+..|||+.|+|-.+.|.|.+.+.+++-+...++. ++...+. ..-+
T Consensus 1132 -Re------nPkIets~mD-G~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~--gRR~i~~--~LqY 1199 (1289)
T KOG1214|consen 1132 -RE------NPKIETSSMD-GENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGT--GRRVIQN--NLQY 1199 (1289)
T ss_pred -cc------CCcceeeccC-CccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCC--cchhhhh--cccC
Confidence 22 2235555554 33333 34677899999999999999999999999999887643 2222221 1126
Q ss_pred CcceeeCCCCCEEEEEec
Q 023085 182 PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~ 199 (287)
|-+++-+.+. +|.+.++
T Consensus 1200 PF~itsy~~~-fY~TDWk 1216 (1289)
T KOG1214|consen 1200 PFSITSYADH-FYHTDWK 1216 (1289)
T ss_pred ceeeeecccc-ceeeccc
Confidence 8888887776 8888887
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=0.0081 Score=49.76 Aligned_cols=226 Identities=13% Similarity=0.146 Sum_probs=123.1
Q ss_pred CCCCCcEEEE-ecCCeEEEEE--CCceEEEEeeCCccc-cCeEECCCCcEEEEeCC--CceEEEc-cCC--cEEEeeecC
Q 023085 1 MDKNGVIYTA-TRDGWIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNA--NGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 1 ~d~~G~l~~~-~~~g~i~~~~--~~~~~~~~~~~~~~~-~~i~~d~dg~l~v~~~~--~gi~~~~-~~g--~~~~~~~~~ 71 (287)
|+.+|...++ +.+..+.-|+ ++............. ......++..+..++.. ..|..++ .+. ++.+.
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~---- 97 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP---- 97 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC----
Confidence 4577865555 4666777788 565544433322111 02233455555555432 2466666 333 44432
Q ss_pred CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
| .-..++.|.+.+.+..+++.+ .+..|..||.+..+-..+. ....+.-.+++|+|- ++.+
T Consensus 98 G-H~~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l-~~~~~pi~AfDp~GL-ifA~ 157 (311)
T KOG1446|consen 98 G-HKKRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLL-NLSGRPIAAFDPEGL-IFAL 157 (311)
T ss_pred C-CCceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEE-ecCCCcceeECCCCc-EEEE
Confidence 2 124678899999889999632 2456666776532221111 123445567999885 4444
Q ss_pred eCCCCEEEEEEecCCCCcceeEEecc--CCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
...+..|..||+..-..+-...+.-. ....-..|.+.++|+ |.+++..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~----------------------------- 208 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA----------------------------- 208 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC-----------------------------
Confidence 44555888899752111212222211 112346788999996 6666655
Q ss_pred ccCCCceEEEEEC-CCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i~~~~~ 286 (287)
+.++.+| .+|..+..|+..... .+.+-.++. -++.-.+++...++|+++++
T Consensus 209 ------s~~~~lDAf~G~~~~tfs~~~~~-~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 209 ------SFIYLLDAFDGTVKSTFSGYPNA-GNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ------CcEEEEEccCCcEeeeEeeccCC-CCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 4667777 478888888764322 112223333 35555566666677777665
No 78
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.91 E-value=0.0054 Score=56.03 Aligned_cols=59 Identities=15% Similarity=0.087 Sum_probs=38.3
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC-----cc---ccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QT---LVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-----~~---~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.+|+++.++.|+.++ +|+......... .+ ..+.++..++++|+++....|+.+| .+|
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG 130 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG 130 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCC
Confidence 67899999889999999 565432221111 00 1023333348999998766799999 777
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.91 E-value=0.0059 Score=50.22 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=99.9
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--eccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+..++.+..+|.||.+... -+...|.++|++++++... .+.-.+..|+++. +..+|.-..
T Consensus 45 aFTQGL~~~~~g~LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEES
T ss_pred ccCccEEecCCCEEEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEe
Confidence 35567888778999996322 1345799999999886543 3344577899876 446999999
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCC
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG 233 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (287)
.++..++||.+. +.....+. .++..=|++.|. ..||++..+
T Consensus 108 k~~~~f~yd~~t--l~~~~~~~--y~~EGWGLt~dg-~~Li~SDGS---------------------------------- 148 (264)
T PF05096_consen 108 KEGTGFVYDPNT--LKKIGTFP--YPGEGWGLTSDG-KRLIMSDGS---------------------------------- 148 (264)
T ss_dssp SSSEEEEEETTT--TEEEEEEE---SSS--EEEECS-SCEEEE-SS----------------------------------
T ss_pred cCCeEEEEcccc--ceEEEEEe--cCCcceEEEcCC-CEEEEECCc----------------------------------
Confidence 899999999753 33333332 223345688663 369988876
Q ss_pred ceEEEEECCC-CcEEEEEEC-CCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 234 GAHLIHVAED-GTIIRNLVD-PTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
..|..+||+ -+....+.. .++.+......+-..+|.||.--+..++|.++|-
T Consensus 149 -~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 149 -SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp -SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred -cceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 489999986 345555544 2455566666777679999999999999999984
No 80
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.90 E-value=0.015 Score=52.23 Aligned_cols=108 Identities=14% Similarity=0.116 Sum_probs=64.5
Q ss_pred CeEECCCCc-EEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+.+.|||+ |..+... ..|+.++ .+| .+.+... .+ ....+++.++|+ |.++...
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g----~~~~~~wSPDG~~La~~~~~-------------- 268 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RG----HNGAPAFSPDGSRLAFASSK-------------- 268 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CC----ccCceeECCCCCEEEEEEec--------------
Confidence 788999996 4333322 2488888 666 5555322 11 223578889986 4443110
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC--CEEEEEEec
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--FRCRKYWLK 164 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~ 164 (287)
.+...||.++..+++...+...........|+|||+.|+++.... ..|+.++..
T Consensus 269 -~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 269 -DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred -CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 122358889887777666554333445678999999877765433 356666544
No 81
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.89 E-value=0.019 Score=52.46 Aligned_cols=253 Identities=11% Similarity=0.032 Sum_probs=121.7
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCc------cccCeEECCCCcEEEEeC---------CCceEEEc-cCCcEEE
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDGVENF 66 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~------~~~~i~~d~dg~l~v~~~---------~~gi~~~~-~~g~~~~ 66 (287)
+.+|+++.+|.|+.++ +|+.......... ..+...+. ++.+++++. ...++.+| .+|...+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 7899999999999999 6765433332221 11133343 377787752 23588899 6772222
Q ss_pred eeec-CC----ccc------------ccc-ceEEEcC-CCcEEEEcCCCCCCCcceeeee--eccCCCceEEEEeCCCCe
Q 023085 67 LSYV-NG----SKL------------RFA-NDVVEAS-DGSLYFTVSSSKYLPHEYCLDI--LEGKPHGQLLKYDPSSNI 125 (287)
Q Consensus 67 ~~~~-~~----~~~------------~~~-~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 125 (287)
.... .. .+. ..+ ...++|. .+.+|+....+.. ..|.... ......+.|+.+|.++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~--~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSP--WNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCC--CccCCccCCCCCCceeeEEEEcCCCCC
Confidence 1111 00 000 000 1245663 5678886332100 0000000 001123479999999888
Q ss_pred eEEeeccc-------cccceEEEc----cCCC---EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 126 TTLVADGF-------YFANGVALS----RDED---YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 126 ~~~~~~~~-------~~~~~i~~~----~~~~---~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
.....+.. ..+....+. -+++ .+|+. ...+.++.+|..+++..-..... ..+++.++ +
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~-~ 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLISARPEV------EQPMAYDP-G 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEeeEeEee------ccccccCC-c
Confidence 76643211 111111111 1232 35555 35678999998654321111110 12344444 7
Q ss_pred CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCc------cccceEEE
Q 023085 192 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ------LMSFVTSG 264 (287)
Q Consensus 192 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~------~~~~~~~~ 264 (287)
.+|+......... .. +. -..+.....+.|..+|. +|+.++........ .......+
T Consensus 340 ~vyv~~~~~~~~~---~~-------------~~-~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 340 LVYLGAFHIPLGL---PP-------------QK-KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred eEEEccccccccC---cc-------------cc-cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 7888764310000 00 00 00011223578999996 58888887654110 00111234
Q ss_pred EEeCCEEEEEecCCCeEEEEeC
Q 023085 265 LQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 265 ~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
...++.||+++. .+.|..+|.
T Consensus 403 ~~~g~~v~~g~~-dG~l~ald~ 423 (488)
T cd00216 403 ATAGNLVFAGAA-DGYFRAFDA 423 (488)
T ss_pred EecCCeEEEECC-CCeEEEEEC
Confidence 456788888874 456666664
No 82
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0075 Score=49.88 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=99.3
Q ss_pred CCCCc-EEEEe-cCCeEEEEE-CCceEEEEee--CCccccCeEECCCCcEEEEeCC-CceEEEc--cCC-cEEEee----
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG-VENFLS---- 68 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~-~~~~~~~~~~--~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~--~~g-~~~~~~---- 68 (287)
+++-+ |+..+ +...|..++ .|.+...... -..|. +|..-.+|...+++.. ..++.+. .++ ......
T Consensus 94 np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~ 172 (316)
T COG3204 94 NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIP 172 (316)
T ss_pred CCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEe
Confidence 34443 44333 445667777 6665444322 23556 7777777777776644 3444444 333 222211
Q ss_pred -ecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--cc-------ccccc
Q 023085 69 -YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DG-------FYFAN 137 (287)
Q Consensus 69 -~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~-------~~~~~ 137 (287)
...........+++.|+. .++|++- ....-.|+.++.....+.... .+ .....
T Consensus 173 L~~~~k~N~GfEGlA~d~~~~~l~~aK----------------Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 173 LGTTNKKNKGFEGLAWDPVDHRLFVAK----------------ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred ccccCCCCcCceeeecCCCCceEEEEE----------------ccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 111111234568999986 5788852 112346777764322222111 00 23457
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC------CCCcceeeCCCCCEEEEEec
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP------GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~d~~G~lwv~~~~ 199 (287)
|+.+++..+.|+|-+..+..|.-++.++...+.... ..... ..+.|++.|.+|+||+.+.+
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL-~~g~~gL~~dipqaEGiamDd~g~lYIvSEP 303 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSL-TKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP 303 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCCeeeeEEe-ccCCCCCcccCCCcceeEECCCCCEEEEecC
Confidence 888988777788777777788888877643221111 11111 13789999999999999987
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.87 E-value=0.0099 Score=52.45 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=82.7
Q ss_pred CCCCcEEEEecCCeEEEEE-C-CceEEEEe-eCCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCccccc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~-~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~ 77 (287)
-.+|.+..|+.+|.|..|. . .++.+-.. .++... ++...++|.|.-+.-.+-|...| . ..++.+.........
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd--~~y~k~r~~elPe~~G~ 331 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWD--DNYRKLRETELPEQFGP 331 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecc--ccccccccccCchhcCC
Confidence 3577888888888888888 2 23322222 223334 67777888877643222344333 3 333322211112234
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
|..++.. .+.|+|. +..+.|..=..+.+-..........--|++..|... +|++......
T Consensus 332 iRtv~e~-~~di~vG------------------TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~T~gqdk~ 391 (626)
T KOG2106|consen 332 IRTVAEG-KGDILVG------------------TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLLTCGQDKH 391 (626)
T ss_pred eeEEecC-CCcEEEe------------------eccceEEEeeecCCceEEEEecccceeeEEcCCChh-heeeccCcce
Confidence 5555433 4458884 333444433333222222222233446778788665 7777766665
Q ss_pred EEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 158 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+..++ +. + ......... ......+++.|.+-+++..
T Consensus 392 v~lW~-~~-k-~~wt~~~~d---~~~~~~fhpsg~va~Gt~~ 427 (626)
T KOG2106|consen 392 VRLWN-DH-K-LEWTKIIED---PAECADFHPSGVVAVGTAT 427 (626)
T ss_pred EEEcc-CC-c-eeEEEEecC---ceeEeeccCcceEEEeecc
Confidence 66665 21 1 111111111 1334556666666666554
No 84
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.011 Score=48.08 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCcEEEEecCCeEEEEE---CCceEEEEeeCCccccCeEECC-CCcEEEEeCCCceEEEc-cCC-cEEE
Q 023085 4 NGVIYTATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-VENF 66 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~gi~~~~-~~g-~~~~ 66 (287)
.|-||.+++++..+.+| .+...+ .+.++....+.++++ ++.||++..+..+++.. .++ .+++
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVyk-skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~ 172 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYK-SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEF 172 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEe-cccCCceeccceecCCCceEEEEeccceEEEEccCCCCccee
Confidence 35899999999999998 232222 222233222667777 89999998777788888 556 5554
No 85
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.83 E-value=0.019 Score=50.88 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=50.2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec----cccccceEEEccCCCEEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+++++.+.+||..+++. ..++.++.||-++|+..-... ......++.++||++.+..+
T Consensus 191 kFV~~VRysPDG~~Fat~-----------------gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATA-----------------GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred cceeeEEECCCCCeEEEe-----------------cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 357777888888877752 336789999998887654433 22344678999999855544
Q ss_pred eCCCCEEEEEEecCC
Q 023085 152 ESWKFRCRKYWLKGE 166 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~ 166 (287)
+....+..||+...
T Consensus 254 -SaDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 254 -SADKTIKIWDVSTN 267 (603)
T ss_pred -cCCceEEEEEeecc
Confidence 45667888887654
No 86
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.78 E-value=0.018 Score=50.63 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=79.6
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeC----CccccCeEECCCCcEEEEeCCCceEEEcc-CCcEEEeeecCCcc
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFID----SQTLVGLTSTKEGHLIICDNANGLHKVSE-DGVENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~----~~~~~~i~~d~dg~l~v~~~~~gi~~~~~-~g~~~~~~~~~~~~ 74 (287)
+.+|.+|+++.+|.|..++ ++.. .|.... .... +-.+..+|++|+++...-++++++ +|...+.....+ .
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~-~W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~ 142 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLV-KWSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG-S 142 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcE-EecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC-C
Confidence 4688999999999999999 4442 342221 1223 334445999999986644999994 783333222222 1
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-----ccccceEEEccCCCEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----FYFANGVALSRDEDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~l~ 149 (287)
....+-.+-.++.+|+.. ..+.++.++..+|+....... ........ .. ...+|
T Consensus 143 -~~~~~~~v~~~~~v~~~s------------------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~~vy 201 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGT------------------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IA-SGTVY 201 (370)
T ss_pred -eEEecCcEEcCcEEEEec------------------CCCeEEEEEccCCcEEEEEecCCccccccccCce-ee-cceEE
Confidence 111122344477888841 246788888887776543211 11111111 22 33477
Q ss_pred EEeCC-CCEEEEEEecCC
Q 023085 150 VCESW-KFRCRKYWLKGE 166 (287)
Q Consensus 150 v~~~~-~~~l~~~~~~~~ 166 (287)
+.... ...++.+++..+
T Consensus 202 ~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 202 VGSDGYDGILYALNAEDG 219 (370)
T ss_pred EecCCCcceEEEEEccCC
Confidence 77543 346888887543
No 87
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.76 E-value=0.018 Score=48.31 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=70.5
Q ss_pred cEEEEe-cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-c----------EEEeee
Q 023085 6 VIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V----------ENFLSY 69 (287)
Q Consensus 6 ~l~~~~-~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~----------~~~~~~ 69 (287)
.|-++| +.|+++.+. +|+...+...-..+. |++.. .++||+++. ..|+++. ... . ..+.+.
T Consensus 19 Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr 95 (335)
T TIGR03032 19 SLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPR 95 (335)
T ss_pred EEEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeee
Confidence 466667 667777775 566665555556677 88775 468999984 5788882 111 1 111111
Q ss_pred cC-CccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccc---------cccce
Q 023085 70 VN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF---------YFANG 138 (287)
Q Consensus 70 ~~-~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~---------~~~~~ 138 (287)
.. -.....+++|++ .++.+|+.++. -+.|..+++. -.+...- +++ =.-||
T Consensus 96 ~~~~TGdidiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLNG 156 (335)
T TIGR03032 96 ASYVTGDIDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLNG 156 (335)
T ss_pred eeeeccCcchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeecc
Confidence 00 011235677888 67788886533 2456666654 3333221 111 12378
Q ss_pred EEEccCCCEEEEEeC
Q 023085 139 VALSRDEDYVVVCES 153 (287)
Q Consensus 139 i~~~~~~~~l~v~~~ 153 (287)
+++. +|+--||+..
T Consensus 157 lA~~-~g~p~yVTa~ 170 (335)
T TIGR03032 157 MALD-DGEPRYVTAL 170 (335)
T ss_pred eeee-CCeEEEEEEe
Confidence 8874 5767777654
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.72 E-value=0.012 Score=48.48 Aligned_cols=140 Identities=19% Similarity=0.211 Sum_probs=83.9
Q ss_pred CCcEEEEe-cCCeEEEEECCceEEEE--eeCCccccCeEECCCCcEEEEeCCCceEEEccCC---cEEEeeecCCccccc
Q 023085 4 NGVIYTAT-RDGWIKRLQDGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~~~~~~~~~--~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g---~~~~~~~~~~~~~~~ 77 (287)
++.||.-| ..+..+.|+...++... .-++..+ |++.| ..+||+++....|+.+|+.. ...+.-...+.+...
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 35678777 45666777722232221 2245678 88855 34799998777899999543 333433455666777
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-----------c-----ccccceEEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------G-----FYFANGVAL 141 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----------~-----~~~~~~i~~ 141 (287)
.|.|.+- +|.||.- .| ....|.++||.+|++..... . ..--||||+
T Consensus 177 LNELE~i-~G~IyAN---------VW--------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAy 238 (264)
T PF05096_consen 177 LNELEYI-NGKIYAN---------VW--------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAY 238 (264)
T ss_dssp EEEEEEE-TTEEEEE---------ET--------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEE
T ss_pred cEeEEEE-cCEEEEE---------eC--------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeE
Confidence 8888776 7888882 22 14579999999999875421 0 112489999
Q ss_pred ccCCCEEEEEeCCCCEEEEEEe
Q 023085 142 SRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
+|+.+.+||+.-.=..++.+.+
T Consensus 239 d~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 239 DPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp ETTTTEEEEEETT-SEEEEEEE
T ss_pred eCCCCEEEEEeCCCCceEEEEE
Confidence 9999999998643345655543
No 89
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.69 E-value=0.025 Score=52.34 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=73.8
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...+++++..+||.+.+|. ..++.|-.||..++- +..+..+.....++.|...|+ ..++.+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG-----------------~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~-~llssS 411 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATG-----------------AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN-VLLSSS 411 (893)
T ss_pred ccceeeEEECCCCcEEEec-----------------cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC-EEEEee
Confidence 4578899999999998863 345678888877664 444556667778899999888 566666
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+++..||+.. ...++.|..+.+---..++.|+.|.|-++...
T Consensus 412 LDGtVRAwDlkR--YrNfRTft~P~p~QfscvavD~sGelV~AG~~ 455 (893)
T KOG0291|consen 412 LDGTVRAWDLKR--YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQ 455 (893)
T ss_pred cCCeEEeeeecc--cceeeeecCCCceeeeEEEEcCCCCEEEeecc
Confidence 788999999853 23455554332222356888999987777654
No 90
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.69 E-value=0.0051 Score=56.49 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred CceEEEEeCCC-----CeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC------CcceeEE-ec-cCC
Q 023085 113 HGQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER------KGKLETF-AE-NLP 179 (287)
Q Consensus 113 ~~~v~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~------~~~~~~~-~~-~~~ 179 (287)
.+.|..+|..+ .++..+......|+|+.++|||+++|+++-.++.+-.+|.+..+ +.-.... .+ ...
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 34688888776 24555555667899999999999999999888999999986421 1101111 11 122
Q ss_pred CCCcceeeCCCCCEEEEEec
Q 023085 180 GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 180 ~~~~~i~~d~~G~lwv~~~~ 199 (287)
-.|...++|.+|+.|++..-
T Consensus 375 lGPLHTaFDg~G~aytslf~ 394 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFL 394 (635)
T ss_pred CCcceEEECCCCCEEEeEee
Confidence 35889999999999998864
No 91
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.67 E-value=0.02 Score=46.24 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=97.3
Q ss_pred cCCeEEEEE--CCce-EEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~--~~~~-~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+..|.-|. +|.= ..+..+....+ .+.+.+|++..++....-|..|| .++ -.+.... .+ +-..+..+.+..+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~-e~-h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF-EG-HTKNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE-ec-cCCceEEEEEeec
Confidence 667777776 5543 34555555666 88899999866654344577777 555 2233221 11 1235667888888
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
|+-..+ +..+|.+-.+|...-...+.....+..+.+++.|....|++++ .++.|+.+|+...
T Consensus 95 grWMyT-----------------gseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 GRWMYT-----------------GSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGEN 156 (311)
T ss_pred CeEEEe-----------------cCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCC
Confidence 874333 3346677777776433333333335568888998777788876 4678999998643
Q ss_pred CCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 167 RKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.... ....+.......+++++||..-++...
T Consensus 157 ~c~~--~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 157 SCTH--ELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred cccc--ccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 2111 111111123455777778876666644
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.67 E-value=0.0057 Score=49.28 Aligned_cols=135 Identities=14% Similarity=0.113 Sum_probs=84.6
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeecCCccccccceEEEc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEA 84 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~~~~~~~~~~~l~~d 84 (287)
|.-+++++.|..|| ++...+-...+..+. ++-+.+||++....++++|--.+++.+..+..... +..+.+....
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~ 233 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---PCNVESASLH 233 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccC---cccccccccc
Confidence 33445677788888 555444333333344 88889999988877777776666443333322111 1244555667
Q ss_pred CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 85 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 85 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
++..+||+ +.....+++||-.+|+ +..+ -......+-+.|+|+|+ +|.+.+..+.|..|.
T Consensus 234 P~k~~fVa-----------------Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 234 PKKEFFVA-----------------GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQ 295 (334)
T ss_pred CCCceEEe-----------------cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEE
Confidence 77788886 2334568888877775 3332 22344456778999998 899888777776665
Q ss_pred e
Q 023085 163 L 163 (287)
Q Consensus 163 ~ 163 (287)
.
T Consensus 296 t 296 (334)
T KOG0278|consen 296 T 296 (334)
T ss_pred e
Confidence 4
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.64 E-value=0.024 Score=46.45 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=116.7
Q ss_pred CeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++..+||+..++....+ +...| .+| ...+... -..+.++++++|.+-.++ +..
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH-----~~dVlsva~s~dn~qivS-----------------GSr 125 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH-----TKDVLSVAFSTDNRQIVS-----------------GSR 125 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-----CCceEEEEecCCCceeec-----------------CCC
Confidence 778889999887754445 44455 566 3333211 135678899999887775 234
Q ss_pred CceEEEEeCCCCeeEEeecc--ccccceEEEccCCCEEEE-EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 113 HGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVV-CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~l~v-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
+..+-.++..++....+... -...+-+.|+|.....++ ..+....+..+++.+-++ ...+. .-.++.+.+++.+
T Consensus 126 DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSP 202 (315)
T ss_pred cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccc-cccccEEEEEECC
Confidence 55666666553333333332 344566788987633444 444555666777654222 11222 2334567799999
Q ss_pred CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEeC
Q 023085 190 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD 268 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 268 (287)
||.+-..... .+.++..|.+ ++-+..+.. +..+.++++..
T Consensus 203 DGslcasGgk----------------------------------dg~~~LwdL~~~k~lysl~a-----~~~v~sl~fsp 243 (315)
T KOG0279|consen 203 DGSLCASGGK----------------------------------DGEAMLWDLNEGKNLYSLEA-----FDIVNSLCFSP 243 (315)
T ss_pred CCCEEecCCC----------------------------------CceEEEEEccCCceeEeccC-----CCeEeeEEecC
Confidence 9988776544 4567777754 555444432 34678899999
Q ss_pred CEEEEEecCCCeEEEEeCC
Q 023085 269 NHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~~ 287 (287)
++.|+.-.-+.+|-+++++
T Consensus 244 nrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 244 NRYWLCAATATSIKIWDLE 262 (315)
T ss_pred CceeEeeccCCceEEEecc
Confidence 9999999999999988874
No 94
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.63 E-value=0.029 Score=47.20 Aligned_cols=207 Identities=15% Similarity=0.049 Sum_probs=110.1
Q ss_pred CeEECCCCcEEEE-eCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIIC-DNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+++..|.....++ ... .-.+++| .+| .........+.. +--.-+++++|++.++... ....
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEn------------d~~~ 74 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTEN------------DYET 74 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEecc------------ccCC
Confidence 7888885543332 222 2378888 777 443323222222 2122467888875444211 1234
Q ss_pred CCceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCC-----------------CCEEEEEEecCCCCcce
Q 023085 112 PHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESW-----------------KFRCRKYWLKGERKGKL 171 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~-----------------~~~l~~~~~~~~~~~~~ 171 (287)
..|.|-.||.. ..+.++ ......|+.+.+.|||++|.|++-+ ...|..+|...+++-+.
T Consensus 75 g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 75 GRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred CcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 45667777776 333333 3445578999999999999998731 11233333222221111
Q ss_pred eEEe-ccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE
Q 023085 172 ETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL 250 (287)
Q Consensus 172 ~~~~-~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 250 (287)
..+- .........++++.+|.+|++..... +... . .--|.... .+..+..+
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg--------------------~~~~-----~--~PLva~~~-~g~~~~~~ 205 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDGDGTVAFAMQYQG--------------------DPGD-----A--PPLVALHR-RGGALRLL 205 (305)
T ss_pred eecCccccccceeeEEecCCCcEEEEEecCC--------------------CCCc-----c--CCeEEEEc-CCCcceec
Confidence 1110 00111367799999999999997510 0000 0 01233343 34445555
Q ss_pred ECCCCc---cccceEEEEEe-C-CEEEEEecCCCeEEEEeC
Q 023085 251 VDPTGQ---LMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 251 ~~~~~~---~~~~~~~~~~~-~-g~l~i~~~~~~~i~~~~~ 286 (287)
..++.. ..+++-+++.+ + +.+-+++=.++++.++|.
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 554432 23567777775 3 456678888899988864
No 95
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=0.032 Score=47.42 Aligned_cols=209 Identities=13% Similarity=0.103 Sum_probs=120.0
Q ss_pred EEeeCCccccCeEECCCCcEEEEeCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcc
Q 023085 27 WKFIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 102 (287)
Q Consensus 27 ~~~~~~~~~~~i~~d~dg~l~v~~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~ 102 (287)
...+...|+..+...+||..|+.... ..|.+.+ .+| ..++... + +....-+...++|..+++-
T Consensus 190 l~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--g--lgg~slLkwSPdgd~lfaA--------- 256 (445)
T KOG2139|consen 190 LQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--G--LGGFSLLKWSPDGDVLFAA--------- 256 (445)
T ss_pred eeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--C--CCceeeEEEcCCCCEEEEe---------
Confidence 34445566657888899988877433 3588888 566 6666422 1 2345568899999877752
Q ss_pred eeeeeeccCCCceEEEEeCCCCeeE--EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCC--Cc------cee
Q 023085 103 YCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGER--KG------KLE 172 (287)
Q Consensus 103 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~--~~------~~~ 172 (287)
+. ..++++-..+..+. +..-......+-+++|.|+.|.++.+.+.+|+....+++. .. ...
T Consensus 257 --------t~-davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~l 327 (445)
T KOG2139|consen 257 --------TC-DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVL 327 (445)
T ss_pred --------cc-cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeee
Confidence 11 23454432222221 1111222556778999999999999888999887655321 11 111
Q ss_pred EEec-----------cCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 023085 173 TFAE-----------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA 241 (287)
Q Consensus 173 ~~~~-----------~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (287)
.... ...+.+..++.|+.|+.-....+..+.+..+ ..-+.+|+
T Consensus 328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~--------------------------k~~i~~fd 381 (445)
T KOG2139|consen 328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC--------------------------KLHISRFD 381 (445)
T ss_pred eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh--------------------------hhhhhhhc
Confidence 1110 0234577899999998777777755433333 12344555
Q ss_pred CCCcEEEEEE--C-CCCccccceEEEEE----eCCEEEEEecCCCeEEEEeC
Q 023085 242 EDGTIIRNLV--D-PTGQLMSFVTSGLQ----VDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 242 ~~g~~~~~~~--~-~~~~~~~~~~~~~~----~~g~l~i~~~~~~~i~~~~~ 286 (287)
..-.....+. . -.|. .+..+++ .+++|..-....+++.+|++
T Consensus 382 tr~sp~vels~cg~i~ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 382 TRKSPPVELSYCGMIGGE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccccCceEEEecccccCC---CCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 4333222222 1 1122 1333333 25788888888888888876
No 96
>PRK13684 Ycf48-like protein; Provisional
Probab=97.59 E-value=0.04 Score=47.76 Aligned_cols=216 Identities=10% Similarity=0.060 Sum_probs=107.5
Q ss_pred cEEEEecCCeEEEEEC-C-ceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcccccc
Q 023085 6 VIYTATRDGWIKRLQD-G-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFA 78 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~-~-~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~~ 78 (287)
..|++...|.|++=.+ | .++..... +..+. .+....++.+|++.....|++-...| ++.+.... ...+
T Consensus 101 ~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~----~g~~ 175 (334)
T PRK13684 101 EGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA----AGVV 175 (334)
T ss_pred cEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC----cceE
Confidence 4566666666777653 2 44444322 22334 34433445667666444576665444 55543221 2356
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEE-eCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCCC
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+++...+++.+++.. ..|.+++. +.....+..+... ....+++.+.++++ +|++... +
T Consensus 176 ~~i~~~~~g~~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~~-G 235 (334)
T PRK13684 176 RNLRRSPDGKYVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLARG-G 235 (334)
T ss_pred EEEEECCCCeEEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEecC-C
Confidence 778888887766642 23456654 2221234443322 23456777888887 5665433 3
Q ss_pred EEEEE-EecCC-CCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCc
Q 023085 157 RCRKY-WLKGE-RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 234 (287)
Q Consensus 157 ~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (287)
..++ ..++. .......-..........+++.+++++|++...
T Consensus 236 -~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~----------------------------------- 279 (334)
T PRK13684 236 -QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGN----------------------------------- 279 (334)
T ss_pred -EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCC-----------------------------------
Confidence 3334 23322 111110000000012345677778899998876
Q ss_pred eEEEEECCCCcEEEEEECCCCccccceEEEE-EeCCEEEEEecCCCeEEEE
Q 023085 235 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 235 ~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~i~~~~~~~i~~~ 284 (287)
+.+++-...|+.......+.+.. .....+. .+++++|+.+..| .|.++
T Consensus 280 G~v~~S~d~G~tW~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~~G-~il~~ 328 (334)
T PRK13684 280 GTLLVSKDGGKTWEKDPVGEEVP-SNFYKIVFLDPEKGFVLGQRG-VLLRY 328 (334)
T ss_pred CeEEEeCCCCCCCeECCcCCCCC-cceEEEEEeCCCceEEECCCc-eEEEe
Confidence 35554433355444433223332 2334444 4578999987654 44443
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.036 Score=46.08 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceee
Q 023085 31 DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCL 105 (287)
Q Consensus 31 ~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~ 105 (287)
...+. .+.++.+|.+.++ +...-+..|+ .+| ...+....- .+.-+.+..+ .++.-+.
T Consensus 14 ~~~i~-sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----G~~~~~Fth~~~~~i~sS------------ 75 (311)
T KOG1446|consen 14 NGKIN-SLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----GVDLACFTHHSNTVIHSS------------ 75 (311)
T ss_pred CCcee-EEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----cccEEEEecCCceEEEcc------------
Confidence 33445 8899999987776 4345788898 777 333322111 1222223222 2332221
Q ss_pred eeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcc
Q 023085 106 DILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 184 (287)
Q Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
...+..|.+++..+++..+ +.......+.|..+|-++ .+++.+....|..||+.. .+...... .. .+--
T Consensus 76 ----tk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~---~~cqg~l~-~~-~~pi 145 (311)
T KOG1446|consen 76 ----TKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRV---KKCQGLLN-LS-GRPI 145 (311)
T ss_pred ----CCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecC---CCCceEEe-cC-CCcc
Confidence 0123457777766666444 445556778999999886 888888888999999752 33333331 22 2335
Q ss_pred eeeCCCCCEEEEEec
Q 023085 185 INLAPDGTFWIAIIK 199 (287)
Q Consensus 185 i~~d~~G~lwv~~~~ 199 (287)
.|+|++|-++.....
T Consensus 146 ~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 146 AAFDPEGLIFALANG 160 (311)
T ss_pred eeECCCCcEEEEecC
Confidence 789999966666654
No 98
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.55 E-value=0.0044 Score=54.29 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=87.4
Q ss_pred cEEEEecCC-eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g-~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
.+.+|+.+| .|..|+ .++.+++...-++.. .+.++++|. +.+++..-.|+.++ .+| .+.+.... -..+.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~----~~lIt 447 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE----YGLIT 447 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc----cceeE
Confidence 456777666 677777 566677766666777 889999997 77777656799999 888 66653322 23567
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+.+.+++++ |++ |+... +--...+..+|+.++++..+..+...-..-+|+||++.||....
T Consensus 448 df~~~~nsr-~iA-----YafP~-------gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 448 DFDWHPNSR-WIA-----YAFPE-------GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEEcCCce-eEE-----EecCc-------ceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 788888776 443 21111 11123566777776776666655555566789999999998764
No 99
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.54 E-value=0.035 Score=45.81 Aligned_cols=220 Identities=12% Similarity=0.098 Sum_probs=120.7
Q ss_pred CC-cEEEEecCCeEEEEE--C-CceEEEEeeCCccccCeEECCCCcEEEEeCC-C--ceEEEc-c--CCcEEEeeecCCc
Q 023085 4 NG-VIYTATRDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-N--GLHKVS-E--DGVENFLSYVNGS 73 (287)
Q Consensus 4 ~G-~l~~~~~~g~i~~~~--~-~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~--gi~~~~-~--~g~~~~~~~~~~~ 73 (287)
|. +|.-++++|.+..|+ + .+..-++.+..=.. ..++.|.|+...+..- + -||.+. + .|..+......+.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH 144 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH 144 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc
Confidence 44 455666899999999 3 33222222211122 4577899987766422 2 255554 3 3322221111111
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEcc-CCCEEEEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSR-DEDYVVVC 151 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~-~~~~l~v~ 151 (287)
-..+.+..+-.|+.|.- +.++.....+|.++++... +.......-++.++| +++ .|++
T Consensus 145 -tgylScC~f~dD~~ilT------------------~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvS 204 (343)
T KOG0286|consen 145 -TGYLSCCRFLDDNHILT------------------GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVS 204 (343)
T ss_pred -cceeEEEEEcCCCceEe------------------cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEe
Confidence 12334444444666554 2345567777777776544 444445556777888 666 7777
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccC
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL 231 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (287)
..-...-..||+..+ .-.+.|. .-.+..+.+.+-|+|.-+.+...
T Consensus 205 g~cD~~aklWD~R~~--~c~qtF~-ghesDINsv~ffP~G~afatGSD-------------------------------- 249 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSG--QCVQTFE-GHESDINSVRFFPSGDAFATGSD-------------------------------- 249 (343)
T ss_pred cccccceeeeeccCc--ceeEeec-ccccccceEEEccCCCeeeecCC--------------------------------
Confidence 655555666776432 2233443 22235777888899977776654
Q ss_pred CCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEE
Q 023085 232 GGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGK 283 (287)
Q Consensus 232 ~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~ 283 (287)
.+..-.||.. .+.+..|.. +. ....++++.+. .|+|.++++....+.+
T Consensus 250 --D~tcRlyDlRaD~~~a~ys~-~~-~~~gitSv~FS~SGRlLfagy~d~~c~v 299 (343)
T KOG0286|consen 250 --DATCRLYDLRADQELAVYSH-DS-IICGITSVAFSKSGRLLFAGYDDFTCNV 299 (343)
T ss_pred --CceeEEEeecCCcEEeeecc-Cc-ccCCceeEEEcccccEEEeeecCCceeE
Confidence 2344556644 556777764 22 23456666665 5777777665444443
No 100
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.54 E-value=0.016 Score=48.73 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=88.4
Q ss_pred CeEECCCCcEEEEeCC-CceEEEccCC-cEEEe-e----ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVSEDG-VENFL-S----YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~-~----~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+++ .++.+|+.+.. +.+..++++- +.+.- + .......-+.|+++.....--|+|--+..--...|..
T Consensus 107 dia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~---- 181 (335)
T TIGR03032 107 DLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWRE---- 181 (335)
T ss_pred heee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCcccccc----
Confidence 7788 67788877644 6777777554 44332 1 1111122467888887544567763221000112221
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
....+++. +|..++++ +..++.+|++.-+. +|+ ||+.++..+.+.++|.++ ++.+... ..++.|.|+.+.
T Consensus 182 ~~~~gG~v-idv~s~ev--l~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~- 251 (335)
T TIGR03032 182 GRRDGGCV-IDIPSGEV--VASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA- 251 (335)
T ss_pred cccCCeEE-EEeCCCCE--EEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee-
Confidence 12233443 56555643 56778888887765 455 999999999999999653 3344444 577899999998
Q ss_pred CCCE-EEEEecc
Q 023085 190 DGTF-WIAIIKL 200 (287)
Q Consensus 190 ~G~l-wv~~~~~ 200 (287)
|.+ +|+..+.
T Consensus 252 -G~llvVgmSk~ 262 (335)
T TIGR03032 252 -GDFAFVGLSKL 262 (335)
T ss_pred -CCEEEEEeccc
Confidence 654 4555553
No 101
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.029 Score=49.19 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=95.9
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeec----cCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE----GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV 150 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v 150 (287)
.+.-..|++++||.||++..+.......++..... .....+++..|+....-+.+.....+|.|++|+|....||+
T Consensus 176 ~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 176 HHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcCcccEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEE
Confidence 44556799999999999844421111111100000 01112344444443343445556778999999998556999
Q ss_pred EeCCCCEEEEEEe-----cCCCCcceeEE-------------------ec-----cCCCCCcceeeCC-C------CCEE
Q 023085 151 CESWKFRCRKYWL-----KGERKGKLETF-------------------AE-----NLPGAPDNINLAP-D------GTFW 194 (287)
Q Consensus 151 ~~~~~~~l~~~~~-----~~~~~~~~~~~-------------------~~-----~~~~~~~~i~~d~-~------G~lw 194 (287)
++-..+.+.--|. .+.-.+-+-.+ .. .....|.+|++-. + |.++
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lf 335 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLF 335 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEE
Confidence 9866533311110 00000000000 00 0001246677642 2 6788
Q ss_pred EEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc---EEEEEECCCCccccceEEEEEe-CCE
Q 023085 195 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT---IIRNLVDPTGQLMSFVTSGLQV-DNH 270 (287)
Q Consensus 195 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~-~g~ 270 (287)
|+.... -.+.+.+++|+ ..+.+-..+.. ..+..+.+. ||.
T Consensus 336 V~~hgs----------------------------------w~~~~~~~~g~~~~~~~~fl~~d~~--gR~~dV~v~~DGa 379 (399)
T COG2133 336 VGAHGS----------------------------------WPVLRLRPDGNYKVVLTGFLSGDLG--GRPRDVAVAPDGA 379 (399)
T ss_pred EEeecc----------------------------------eeEEEeccCCCcceEEEEEEecCCC--CcccceEECCCCe
Confidence 888762 25777888887 44444322221 467887775 899
Q ss_pred EEEEecCCC-eEEEEeC
Q 023085 271 LYVISLTSN-FIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~-~i~~~~~ 286 (287)
|+|++-.++ .|.|+.+
T Consensus 380 llv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 380 LLVLTDQGDGRILRVSY 396 (399)
T ss_pred EEEeecCCCCeEEEecC
Confidence 999998855 9998865
No 102
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.48 E-value=0.051 Score=46.13 Aligned_cols=169 Identities=12% Similarity=0.150 Sum_probs=79.3
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~ 77 (287)
...|++...|.|++-. ...++.+... +..+. .+....++..+++.....|++-...| .+.+.... ...
T Consensus 72 ~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~----~gs 146 (302)
T PF14870_consen 72 NEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSET----SGS 146 (302)
T ss_dssp TEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S--------
T ss_pred CceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCC----cce
Confidence 3566666666666665 2345554322 34455 55555667777776555677766545 55543321 245
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEE-EEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
+.++...++|++.+.. ..|.++ -.++....+...... ......+.|.|++. ||+.. .+
T Consensus 147 ~~~~~r~~dG~~vavs------------------~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~G 206 (302)
T PF14870_consen 147 INDITRSSDGRYVAVS------------------SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RG 206 (302)
T ss_dssp EEEEEE-TTS-EEEEE------------------TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TT
T ss_pred eEeEEECCCCcEEEEE------------------CcccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CC
Confidence 6677778888855432 234454 445542234444332 34456788899876 77776 34
Q ss_pred CEEEEEEecCCCCcceeE-Eecc-CCCC-CcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLET-FAEN-LPGA-PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~-~~~~-~~~~-~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..=+... ....... .... ..++ .-.++..+++.+|++...
T Consensus 207 g~~~~s~~~~-~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 207 GQIQFSDDPD-DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp TEEEEEE-TT-EEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cEEEEccCCC-CccccccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 5565544111 1111111 1111 1111 345788889999999887
No 103
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.48 E-value=0.042 Score=45.06 Aligned_cols=171 Identities=9% Similarity=0.106 Sum_probs=99.8
Q ss_pred CCCcEE-EEecCCeEEEEE--CCce-EEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEcc-CC-cEEEeeecCCccc
Q 023085 3 KNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-DG-VENFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~l~-~~~~~g~i~~~~--~~~~-~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~~-~g-~~~~~~~~~~~~~ 75 (287)
+||... -++.++.+..+| .|+. .++........ ++++++|++-.++... +.|...+. .+ ..++... .. .
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~--~~-~ 148 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED--SH-R 148 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccEEEEEecC--CC-c
Confidence 566544 345788888888 4433 34444444556 8899999976666433 45666663 33 3333221 11 3
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.-++++.+.|+. +.++... ..++.|-.+|.++-++... .......+.++++|||. +..+.-
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg 211 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG 211 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECCCCC-EEecCC
Confidence 467788888874 4444322 2345677777765554332 23344567889999998 677665
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++.++.+|++..+ ....+. .......+++.|+ .+|++...
T Consensus 212 kdg~~~LwdL~~~k--~lysl~--a~~~v~sl~fspn-rywL~~at 252 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGK--NLYSLE--AFDIVNSLCFSPN-RYWLCAAT 252 (315)
T ss_pred CCceEEEEEccCCc--eeEecc--CCCeEeeEEecCC-ceeEeecc
Confidence 66788899986432 122211 1112456777665 58888765
No 104
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.031 Score=48.80 Aligned_cols=221 Identities=15% Similarity=0.129 Sum_probs=118.6
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCcc---ccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccc
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT---LVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~---~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
+++++..--++.|| ..++..+..+.+.+ ..-+.+.++++..+.... +-|+.+. .++ +..+... ..
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie------G~ 346 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE------GV 346 (514)
T ss_pred EEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec------cE
Confidence 45554444556666 55555554443332 113556788874433322 3366666 455 4444221 35
Q ss_pred cceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEeCC
Q 023085 78 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 78 ~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+.++.++++|. ||++. +.|.||.+|..+..+.+.. .+.-....++.++++. ++.+.+.
T Consensus 347 v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~ 407 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSD 407 (514)
T ss_pred EeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccC
Confidence 66788888885 56642 3468999988766544332 2222344567778887 3444455
Q ss_pred CCEEEEEEecCC-CCcceeEEe--ccCCCCCcceeeCCCCCE-EEEEeccchhHHHHhhcchhHHHHHHhCCcccccccc
Q 023085 155 KFRCRKYWLKGE-RKGKLETFA--ENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT 230 (287)
Q Consensus 155 ~~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (287)
.+-+-.|+.+.- .-.++++.. ..+......|.+.++..| -+++..
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~------------------------------- 456 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV------------------------------- 456 (514)
T ss_pred cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc-------------------------------
Confidence 566667775421 111222221 122234667777777653 333332
Q ss_pred CCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe--CCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~l~i~~~~~~~i~~~~~ 286 (287)
....-+++++ |.-....+|... +..+..++++.+. .|.|-||+-. .+|..|.|
T Consensus 457 ~knalrLVHv-PS~TVFsNfP~~-n~~vg~vtc~aFSP~sG~lAvGNe~-grv~l~kL 511 (514)
T KOG2055|consen 457 KKNALRLVHV-PSCTVFSNFPTS-NTKVGHVTCMAFSPNSGYLAVGNEA-GRVHLFKL 511 (514)
T ss_pred cccceEEEec-cceeeeccCCCC-CCcccceEEEEecCCCceEEeecCC-CceeeEee
Confidence 1112355555 445556666654 3446778888875 5888888754 45555543
No 105
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.46 E-value=0.00083 Score=45.74 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=52.1
Q ss_pred cceeeCCC-CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccce
Q 023085 183 DNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV 261 (287)
Q Consensus 183 ~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~ 261 (287)
+++.++++ |.||++..+.+...-++ ...+.+ ....|+|.++||+.+....+-. ++ ..+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~------~~~~le-----------~~~~GRll~ydp~t~~~~vl~~--~L--~fp 59 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDW------VYDLLE-----------GRPTGRLLRYDPSTKETTVLLD--GL--YFP 59 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGH------HHHHHH-----------T---EEEEEEETTTTEEEEEEE--EE--SSE
T ss_pred CceeEecCCCEEEEEeCccccCccce------eeeeec-----------CCCCcCEEEEECCCCeEEEehh--CC--Ccc
Confidence 46888887 99999998743211111 112222 4457999999999998887763 44 344
Q ss_pred EEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 262 TSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 262 ~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
.++.. ++..|.|+.....+|.++-|+
T Consensus 60 NGVals~d~~~vlv~Et~~~Ri~rywl~ 87 (89)
T PF03088_consen 60 NGVALSPDESFVLVAETGRYRILRYWLK 87 (89)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEESS
T ss_pred CeEEEcCCCCEEEEEeccCceEEEEEEe
Confidence 55555 457799999999999998663
No 106
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.046 Score=45.19 Aligned_cols=162 Identities=16% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCceEEEEeeCCccccCeEECCCCc--EEEEeCC-CceEEEccCC-cEEEe-eecCCccccccceEEEcCCCcE-EEEcC
Q 023085 21 DGTWVNWKFIDSQTLVGLTSTKEGH--LIICDNA-NGLHKVSEDG-VENFL-SYVNGSKLRFANDVVEASDGSL-YFTVS 94 (287)
Q Consensus 21 ~~~~~~~~~~~~~~~~~i~~d~dg~--l~v~~~~-~gi~~~~~~g-~~~~~-~~~~~~~~~~~~~l~~d~~g~l-~v~~~ 94 (287)
.|+...-...+.... +|+++|.=. +.++-.. .--+.+|.++ .++.. ....+..+ .-.+ +++++|.+ |.|..
T Consensus 57 aGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf-yGHG-vfs~dG~~LYATEn 133 (366)
T COG3490 57 AGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF-YGHG-VFSPDGRLLYATEN 133 (366)
T ss_pred CCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee-eccc-ccCCCCcEEEeecC
Confidence 344433333444455 788887543 4444322 2356677544 22221 22222111 1123 46778864 55532
Q ss_pred CCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCC-----------------
Q 023085 95 SSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESW----------------- 154 (287)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~----------------- 154 (287)
+ +....|-|-.||.. ..+.++ ......|+.+.+.+||++|.+++-+
T Consensus 134 d-------------fd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM 199 (366)
T COG3490 134 D-------------FDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM 199 (366)
T ss_pred C-------------CCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence 2 12233444455543 223322 2233467888999999998888631
Q ss_pred CCEEEEEEecCCCCcceeEEe-ccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...+...+..++.+-+..... ...--....+.++.||++|.++..
T Consensus 200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 012222221111110000000 000012467889999999999964
No 107
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.079 Score=48.04 Aligned_cols=140 Identities=16% Similarity=0.234 Sum_probs=84.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCCcE--EEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDGVE--NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g~~--~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
...+.++|+..++....++.++. ....+ .+... ......++++++.++|.+.++- ..+
T Consensus 164 ~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~~~l~s~-----------------s~D 224 (456)
T KOG0266|consen 164 CVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDGSYLLSG-----------------SDD 224 (456)
T ss_pred EEEEcCCCCeEEEccCCCcEEEeecccccchhhccc--cccccceeeeEECCCCcEEEEe-----------------cCC
Confidence 45678899875555444555544 32211 11111 2234578899999999977752 234
Q ss_pred ceEEEEeC-CCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 114 GQLLKYDP-SSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 114 ~~v~~~~~-~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
..+..+|. +.+. ++.+.......+.++|+|+++ ++++.+..+.+..|++...+ -.+.+. .-.....++++.++|
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~--~~~~l~-~hs~~is~~~f~~d~ 300 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE--CVRKLK-GHSDGISGLAFSPDG 300 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe--EEEeee-ccCCceEEEEECCCC
Confidence 56666666 3323 344445566778999999995 77777778889999976421 112222 122245678889999
Q ss_pred CEEEEEec
Q 023085 192 TFWIAIIK 199 (287)
Q Consensus 192 ~lwv~~~~ 199 (287)
++.++...
T Consensus 301 ~~l~s~s~ 308 (456)
T KOG0266|consen 301 NLLVSASY 308 (456)
T ss_pred CEEEEcCC
Confidence 76666643
No 108
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.023 Score=49.66 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=95.4
Q ss_pred EEEEecCCeEEEEE-CCceEEE---EeeCCccccCeEECCCCc-EEEE-eCCCceEEEc-cCC-cEEEeeecCCcccccc
Q 023085 7 IYTATRDGWIKRLQ-DGTWVNW---KFIDSQTLVGLTSTKEGH-LIIC-DNANGLHKVS-EDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 7 l~~~~~~g~i~~~~-~~~~~~~---~~~~~~~~~~i~~d~dg~-l~v~-~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~ 78 (287)
|.++..++.+..|. +|+.-.. ......|.-...+.++|. ..++ ....-++.+| .+. ++++.... +....++
T Consensus 228 llvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~-g~e~~~~ 306 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPY-GVEEKSM 306 (514)
T ss_pred EEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCC-Ccccchh
Confidence 44555666665555 4433221 112233442456778886 4443 3334588888 676 66664321 2222355
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l 158 (287)
....+..++.+.+. ....|.|+.+...++++..-..--....+++|+.|++.||++... +.+
T Consensus 307 e~FeVShd~~fia~-----------------~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~-GeV 368 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAI-----------------AGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT-GEV 368 (514)
T ss_pred heeEecCCCCeEEE-----------------cccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC-ceE
Confidence 56677777764442 223567887877766643222222345678899999988888754 589
Q ss_pred EEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 159 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|++..+ .-...|.....-....++...+|. |+++.+
T Consensus 369 ~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS 406 (514)
T KOG2055|consen 369 YVWNLRQN--SCLHRFVDDGSVHGTSLCISLNGS-YLATGS 406 (514)
T ss_pred EEEecCCc--ceEEEEeecCccceeeeeecCCCc-eEEecc
Confidence 99998654 223344322111233455566776 666654
No 109
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.38 E-value=0.014 Score=51.14 Aligned_cols=138 Identities=12% Similarity=0.093 Sum_probs=89.0
Q ss_pred CCcEEEEe-cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccc
Q 023085 4 NGVIYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~-~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.+.|.+.. .++.|..|+ +++..+....-..|+..+.+..+|+-+++... .-|-..| ++| ...+...
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~------ 299 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD------ 299 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC------
Confidence 45555544 678888887 34443333333344447888889966555433 4466667 788 3333221
Q ss_pred cccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.-|+++.+.+++ +++++ +..++.|..+|..++++.. +...+...+.|.|-++|+ -+++.+
T Consensus 300 ~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissS 361 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSS 361 (503)
T ss_pred CCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeec
Confidence 356788888887 77775 3446789999998887432 445667788899988887 466666
Q ss_pred CCCEEEEEEecC
Q 023085 154 WKFRCRKYWLKG 165 (287)
Q Consensus 154 ~~~~l~~~~~~~ 165 (287)
....+..|+...
T Consensus 362 Ddks~riWe~~~ 373 (503)
T KOG0282|consen 362 DDKSVRIWENRI 373 (503)
T ss_pred cCccEEEEEcCC
Confidence 666777777543
No 110
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.32 E-value=0.058 Score=43.30 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred CeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
..+...|+.-+.+ ...+.++.+| .+| .+.+.. ....+|.+.+..+..+.++. ..
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg-----H~aqVNtV~fNeesSVv~Sg-----------------sf 121 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG-----HLAQVNTVRFNEESSVVASG-----------------SF 121 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeeeeccc-----ccceeeEEEecCcceEEEec-----------------cc
Confidence 4555556644433 2235688888 788 455432 24578899998888887752 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEE-EccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVA-LSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
...+..+|=.+..+++++.-.....++. ++-.+ ...++.+-.+++..||+..++.. .-+ .....+.+.+.++|
T Consensus 122 D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtvRtydiR~G~l~--sDy---~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 122 DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTVRTYDIRKGTLS--SDY---FGHPITSVSFSKDG 195 (307)
T ss_pred cceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcEEEEEeecceee--hhh---cCCcceeEEecCCC
Confidence 3456666655555554432222223322 22223 35677677789999998543211 111 11124668888888
Q ss_pred CEEEEE
Q 023085 192 TFWIAI 197 (287)
Q Consensus 192 ~lwv~~ 197 (287)
+--++.
T Consensus 196 nc~La~ 201 (307)
T KOG0316|consen 196 NCSLAS 201 (307)
T ss_pred CEEEEe
Confidence 744444
No 111
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.30 E-value=0.00057 Score=35.69 Aligned_cols=27 Identities=26% Similarity=0.530 Sum_probs=23.5
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
..|.|++++++|+ +||+++.+++|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4689999997775 99999999999876
No 112
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.29 E-value=0.15 Score=48.30 Aligned_cols=143 Identities=11% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCCCC-cEEEEecCCeEEEEECCceEEE---EeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCcc
Q 023085 1 MDKNG-VIYTATRDGWIKRLQDGTWVNW---KFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSK 74 (287)
Q Consensus 1 ~d~~G-~l~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~ 74 (287)
+|++| .|++...+|-|.+++.+.-... ....+.+..+++... +++..++..+-+.++. +.+ ...+.....
T Consensus 21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~iL~Rft--- 96 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-NHFLTGSEQNTVLRYKFPSGEEDTILARFT--- 96 (933)
T ss_pred EcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-cceEEeeccceEEEeeCCCCCccceeeeee---
Confidence 36677 4666667777888873222111 110112221344432 2556666556677776 554 222211110
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
--++.++++.+|...++. ..+-.|-.++..+.. ...+-........+.++|+++.|-++..
T Consensus 97 -lp~r~~~v~g~g~~iaag-----------------sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~ 158 (933)
T KOG1274|consen 97 -LPIRDLAVSGSGKMIAAG-----------------SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC 158 (933)
T ss_pred -ccceEEEEecCCcEEEee-----------------cCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec
Confidence 124678899888866642 223345555543332 2222233344567889999997666664
Q ss_pred CCCEEEEEEecCC
Q 023085 154 WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ~~~~l~~~~~~~~ 166 (287)
.+.+.+|+++..
T Consensus 159 -dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 159 -DGKVQIWDLQDG 170 (933)
T ss_pred -CceEEEEEcccc
Confidence 578999998754
No 113
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.13 Score=46.19 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=80.9
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEE--Ec-cC---C-cEEEeeecCCccccccceE
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHK--VS-ED---G-VENFLSYVNGSKLRFANDV 81 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~--~~-~~---g-~~~~~~~~~~~~~~~~~~l 81 (287)
.|+.++ .|+.+.+....+... ..++.|||+ |.++.... .++. ++ .. + .+.+.... .......
T Consensus 212 ~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~----~~~~~~p 286 (428)
T PRK01029 212 KIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA----FGTQGNP 286 (428)
T ss_pred eEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC----CCCcCCe
Confidence 466666 444444444444444 677889995 54443221 3444 34 32 2 33332211 1122356
Q ss_pred EEcCCCc-EEEE-cCCCCCCCcceeeeeeccCCCceEEEEeCC--CCeeEEeeccccccceEEEccCCCEEEEEeCC--C
Q 023085 82 VEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFANGVALSRDEDYVVVCESW--K 155 (287)
Q Consensus 82 ~~d~~g~-l~v~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~ 155 (287)
++.+||. |.++ +.. +...||.++.. +++...+...........++|||+.|+++... .
T Consensus 287 ~wSPDG~~Laf~s~~~----------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 287 SFSPDGTRLVFVSNKD----------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred EECCCCCEEEEEECCC----------------CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC
Confidence 7888986 4443 211 22357777653 23333333322333456799999988776543 2
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC-EEEEE
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI 197 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-lwv~~ 197 (287)
..|+.+++++++ .+.+.. ...........+||+ |+++.
T Consensus 351 ~~I~v~dl~~g~---~~~Lt~-~~~~~~~p~wSpDG~~L~f~~ 389 (428)
T PRK01029 351 RQICVYDLATGR---DYQLTT-SPENKESPSWAIDSLHLVYSA 389 (428)
T ss_pred cEEEEEECCCCC---eEEccC-CCCCccceEECCCCCEEEEEE
Confidence 468899876542 222221 122345577788886 44443
No 114
>PTZ00421 coronin; Provisional
Probab=97.22 E-value=0.17 Score=46.35 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=63.9
Q ss_pred CeEECC-CCcEEEE-eCCCceEEEc-cCC-cE-----EEeeecCCccccccceEEEcCCC-cEEEEcCCCCCCCcceeee
Q 023085 37 GLTSTK-EGHLIIC-DNANGLHKVS-EDG-VE-----NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD 106 (287)
Q Consensus 37 ~i~~d~-dg~l~v~-~~~~gi~~~~-~~g-~~-----~~~~~~~~~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~ 106 (287)
++++.+ +++++++ .....|..++ +++ .. ++... .+ ....+..+++.+.+ .+.++
T Consensus 80 ~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~g-H~~~V~~l~f~P~~~~iLaS-------------- 143 (493)
T PTZ00421 80 DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QG-HTKKVGIVSFHPSAMNVLAS-------------- 143 (493)
T ss_pred EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cC-CCCcEEEEEeCcCCCCEEEE--------------
Confidence 788888 6765554 3334455666 443 21 11111 11 12356778888865 55554
Q ss_pred eeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 107 ILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
+..++.|..+|..+++.... .........++|+|+++.|. +....+.|..||+..
T Consensus 144 ---gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLa-tgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 144 ---AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLC-TTSKDKKLNIIDPRD 199 (493)
T ss_pred ---EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEE-EecCCCEEEEEECCC
Confidence 22356788888776654332 22334467888999998544 445667899999754
No 115
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=97.22 E-value=0.14 Score=45.41 Aligned_cols=222 Identities=9% Similarity=-0.017 Sum_probs=106.4
Q ss_pred CcEEEEecCCeEEEEE-C-CceEEEEee---CCccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcc---
Q 023085 5 GVIYTATRDGWIKRLQ-D-GTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSK--- 74 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~-~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~--- 74 (287)
+..|+....|.|++-. . ..++..... +.... .+....++..|+......+++-...| ++.+.......+
T Consensus 147 ~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t~~~~l~~ 225 (398)
T PLN00033 147 KEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEETVSATLNR 225 (398)
T ss_pred CEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEcccccccccccc
Confidence 4567666666666655 2 344444332 12223 34444455666665443455554444 544311100000
Q ss_pred ------------ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeec-cccccceEE
Q 023085 75 ------------LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVAD-GFYFANGVA 140 (287)
Q Consensus 75 ------------~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~i~ 140 (287)
..+...+...++|.+++.. ..|.+++-...... +..+.. ......++.
T Consensus 226 ~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg------------------~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~ 287 (398)
T PLN00033 226 TVSSGISGASYYTGTFSTVNRSPDGDYVAVS------------------SRGNFYLTWEPGQPYWQPHNRASARRIQNMG 287 (398)
T ss_pred cccccccccceeccceeeEEEcCCCCEEEEE------------------CCccEEEecCCCCcceEEecCCCccceeeee
Confidence 0122345566677776632 23456665443222 233322 223345677
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCCc--ceeEEecc-CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
+.+++. +|++... +.+++-...+.... +....... ....+.++.+.+++++|++...
T Consensus 288 ~~~dg~-l~l~g~~-G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~------------------ 347 (398)
T PLN00033 288 WRADGG-LWLLTRG-GGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS------------------ 347 (398)
T ss_pred EcCCCC-EEEEeCC-ceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC------------------
Confidence 778887 6666543 44555432221100 11111101 1112456778889999999987
Q ss_pred HHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEE-eCCEEEEEecCCCeEEEE
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~i~~~~~~~i~~~ 284 (287)
|.+.+-...|+........++. ....+.+.+ ++++.|+.+..|- |.++
T Consensus 348 -----------------G~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~-il~~ 396 (398)
T PLN00033 348 -----------------GILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGV-LLRY 396 (398)
T ss_pred -----------------CcEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcE-EEEe
Confidence 3344443345443333322222 223455664 5699999986654 4443
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.21 E-value=0.099 Score=43.71 Aligned_cols=166 Identities=15% Similarity=0.038 Sum_probs=87.4
Q ss_pred EEEEe--cCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCC---cEEEEeCCCceEEEccCC-cEEEeeecCCccccc
Q 023085 7 IYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 7 l~~~~--~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg---~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~ 77 (287)
.|+++ .+-.|..|| .. +........+... .+.+++.- .|.-+...+-|...+ .| +..+.... .. -..
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~sdDG~i~iw~-~~~W~~~~slK-~H-~~~ 129 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGSDDGHIIIWR-VGSWELLKSLK-AH-KGQ 129 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeecCCCcEEEEE-cCCeEEeeeec-cc-ccc
Confidence 35544 455777777 22 2222222233334 55565444 454444333344443 44 43332221 11 135
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
++++++.+.|.|-++..+ ++.+.-++.-.|+...+..-...+.-+.|+|+|...++.. .++
T Consensus 130 Vt~lsiHPS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~--~~~ 190 (362)
T KOG0294|consen 130 VTDLSIHPSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG--RNK 190 (362)
T ss_pred cceeEecCCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe--ccE
Confidence 899999999998886422 3344445544455444433334455688999999877775 456
Q ss_pred EEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 158 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 158 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
|-.|.++...+.. .. ..+-.+.++.++..+.|.++...
T Consensus 191 i~i~q~d~A~v~~--~i--~~~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 191 IDIYQLDNASVFR--EI--ENPKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred EEEEecccHhHhh--hh--hccccceeeeecCCceEEEecCC
Confidence 6666654322111 11 11224566777777778777765
No 117
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.21 E-value=0.057 Score=42.85 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=72.1
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEe--CCCceEEEccCC--cEEEeeecCCccccccceEEEcCCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICD--NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDG 87 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~--~~~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g 87 (287)
.|++++ +.....+......++..++..|+|+ +.+.. ....+..++..+ +..+. ....+.+..+++|
T Consensus 40 ~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-------~~~~n~i~wsP~G 112 (194)
T PF08662_consen 40 ELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-------TQPRNTISWSPDG 112 (194)
T ss_pred EEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-------CCCceEEEECCCC
Confidence 456665 2223333222222344889999996 44443 223566776334 33321 1245789999999
Q ss_pred cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC-----CCEEEEEE
Q 023085 88 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-----KFRCRKYW 162 (287)
Q Consensus 88 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~-----~~~l~~~~ 162 (287)
++.++... +...|.|..+|.++.+..... .......++++|+|+++..+.+. .+++..|+
T Consensus 113 ~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 113 RFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 87774211 123456888887644432211 22345678899999988777653 34455555
Q ss_pred ecC
Q 023085 163 LKG 165 (287)
Q Consensus 163 ~~~ 165 (287)
..+
T Consensus 178 ~~G 180 (194)
T PF08662_consen 178 FQG 180 (194)
T ss_pred ecC
Confidence 544
No 118
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.21 E-value=0.12 Score=47.71 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=38.2
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEEEeeCC----cc-------ccCeEECCCCcEEEEeCCCceEEEc-cCC
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QT-------LVGLTSTKEGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~----~~-------~~~i~~d~dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++..+.|+.+| +|+......... .+ ..++++. ++++++++....++.+| .+|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG 140 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG 140 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCC
Confidence 57899999888999999 665432221110 00 0133333 57899998767799999 788
No 119
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.16 E-value=0.15 Score=44.60 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=83.3
Q ss_pred CCCCcEEEEe-cCCeEEEEE-CCceEEEEeeCCccc-----cCeEECCCCc---EEEEeCC----C--ceEEEc-cCC-c
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-----VGLTSTKEGH---LIICDNA----N--GLHKVS-EDG-V 63 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~~~~~~-----~~i~~d~dg~---l~v~~~~----~--gi~~~~-~~g-~ 63 (287)
|++..++++| ..++++.|+ +|+....... +.++ .++.+ .|+ |.+++.. . .+++++ .++ +
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L 141 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL 141 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence 3445677887 778999999 7776554332 2222 02222 332 4444322 1 267777 456 6
Q ss_pred EEEeeecC--CccccccceEEE--cC-CCcEEEEcCCCCCCCcceeeeeeccCCCce--EEEEe-CCCCeeE----Eeec
Q 023085 64 ENFLSYVN--GSKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQ--LLKYD-PSSNITT----LVAD 131 (287)
Q Consensus 64 ~~~~~~~~--~~~~~~~~~l~~--d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~-~~~~~~~----~~~~ 131 (287)
+.+..... ......+++++. ++ +|.+|+... ...|. -|++. ...+.+. +-..
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~----------------~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVN----------------GKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEE----------------ETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEe----------------cCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 65532110 011233555554 33 466666311 12232 33332 2333321 1122
Q ss_pred cccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc----CCCCCcceee--CC--CCCEEEEEec
Q 023085 132 GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN----LPGAPDNINL--AP--DGTFWIAIIK 199 (287)
Q Consensus 132 ~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~--d~--~G~lwv~~~~ 199 (287)
....+.|++++.....||+++.. ..||+|+.+...-.....+... +.....||++ .. +|.|.+++..
T Consensus 206 ~~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 206 VGSQPEGCVVDDETGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred CCCcceEEEEecccCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 34578999999888899999974 6899999763221112222111 1123566776 33 4456666654
No 120
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.12 Score=43.00 Aligned_cols=185 Identities=10% Similarity=0.105 Sum_probs=106.7
Q ss_pred ccCeEECCCCcEEEEeCC--CceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNA--NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~--~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
.++++++|+-+-.++... ..|+.++..| +..++-. .+..|.+|..-.+|.+-+++.-
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~----g~~DpE~Ieyig~n~fvi~dER--------------- 148 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----GFSDPETIEYIGGNQFVIVDER--------------- 148 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc----ccCChhHeEEecCCEEEEEehh---------------
Confidence 338899998875444334 3578887666 5554321 2456777888877776665411
Q ss_pred CCCceEEEEeCCCCeeEEee-----cc----ccccceEEEccCCCEEEEEeCCC-CEEEEEEecCCCCcc---------e
Q 023085 111 KPHGQLLKYDPSSNITTLVA-----DG----FYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGK---------L 171 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~~-----~~----~~~~~~i~~~~~~~~l~v~~~~~-~~l~~~~~~~~~~~~---------~ 171 (287)
...-.++.+++++....... .. -..-.|++++|+.+.+|++...+ -+|+.+......+.- .
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 11223556666533222111 11 12236899999999999998643 345555422111100 0
Q ss_pred eEEeccCCCCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE
Q 023085 172 ETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL 250 (287)
Q Consensus 172 ~~~~~~~~~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~ 250 (287)
..+.. ...++.+|+ .++|.|=+.. ...|..++.+|..+..+
T Consensus 229 ~~f~~----DvSgl~~~~~~~~LLVLS~E----------------------------------Sr~l~Evd~~G~~~~~l 270 (316)
T COG3204 229 DLFVL----DVSGLEFNAITNSLLVLSDE----------------------------------SRRLLEVDLSGEVIELL 270 (316)
T ss_pred ceEee----ccccceecCCCCcEEEEecC----------------------------------CceEEEEecCCCeeeeE
Confidence 11111 245677775 5677777766 24788999999887766
Q ss_pred ECCCC---cc--ccceEEEEEe-CCEEEEEec
Q 023085 251 VDPTG---QL--MSFVTSGLQV-DNHLYVISL 276 (287)
Q Consensus 251 ~~~~~---~~--~~~~~~~~~~-~g~l~i~~~ 276 (287)
....| +. .....+++++ +|.|||.+=
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 54333 21 2345688886 699999873
No 121
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.11 E-value=0.19 Score=45.15 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=66.0
Q ss_pred CeEECCCCc-E---EEEeCC--CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCc-EEEE-cCCCCCCCcceeee
Q 023085 37 GLTSTKEGH-L---IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLD 106 (287)
Q Consensus 37 ~i~~d~dg~-l---~v~~~~--~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~-l~v~-~~~~~~~~~~~~~~ 106 (287)
.....|||+ + |+.... ..|+..+ .+| .+.+... .+ .....++.+||+ |.++ +..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g----~~~~p~wSPDG~~Laf~s~~~----------- 252 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG----NQLMPTFSPRKKLLAFISDRY----------- 252 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC----CccceEECCCCCEEEEEECCC-----------
Confidence 567889985 2 243322 3589888 566 6665432 11 123457888885 4332 111
Q ss_pred eeccCCCceEEE--EeCCC---CeeEEeecc-ccccceEEEccCCCEEEEEeCCC--CEEEEEEecCCCCcceeEEeccC
Q 023085 107 ILEGKPHGQLLK--YDPSS---NITTLVADG-FYFANGVALSRDEDYVVVCESWK--FRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 107 ~~~~~~~~~v~~--~~~~~---~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
+...++. ++..+ ++...+... .......+++|||+.|++..... ..|++++++... ...+.+. ..
T Consensus 253 -----g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt-~~ 325 (428)
T PRK01029 253 -----GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLT-KK 325 (428)
T ss_pred -----CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEec-cC
Confidence 1112332 34332 233333322 12224568999999776665322 368877764211 1122221 11
Q ss_pred CCCCcceeeCCCCC
Q 023085 179 PGAPDNINLAPDGT 192 (287)
Q Consensus 179 ~~~~~~i~~d~~G~ 192 (287)
..........+||+
T Consensus 326 ~~~~~~p~wSPDG~ 339 (428)
T PRK01029 326 YRNSSCPAWSPDGK 339 (428)
T ss_pred CCCccceeECCCCC
Confidence 12234567788886
No 122
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.08 E-value=0.047 Score=47.14 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=64.4
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEe--eccc-------------cccceEE
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLV--ADGF-------------YFANGVA 140 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~--~~~~-------------~~~~~i~ 140 (287)
.+.+|++.++|.+|+++.+... ......|++++++ |++ ..+ +..+ ....+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEE
Confidence 5678999889999998644100 0112578999877 554 222 1111 1235789
Q ss_pred EccCCCEEEEEeCCC---------------CEEEEEEecCC-CCcceeEEecc------CCCCCcceeeCCCCCEEEEEe
Q 023085 141 LSRDEDYVVVCESWK---------------FRCRKYWLKGE-RKGKLETFAEN------LPGAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~---------------~~l~~~~~~~~-~~~~~~~~~~~------~~~~~~~i~~d~~G~lwv~~~ 198 (287)
++|+|+.||++.... -+|++|+...+ .....-.|... ....+..++.-++++++|-..
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 999999888776432 25677776531 11111122211 122355566677888888776
Q ss_pred c
Q 023085 199 K 199 (287)
Q Consensus 199 ~ 199 (287)
.
T Consensus 234 ~ 234 (326)
T PF13449_consen 234 D 234 (326)
T ss_pred c
Confidence 5
No 123
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.99 E-value=0.14 Score=41.53 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=61.8
Q ss_pred cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEe
Q 023085 76 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 76 ~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
..++.++..++ +.|+.+| .++.|+.+|........ ++........+++.|||..|..++
T Consensus 125 spVn~vvlhpnQteLis~d------------------qsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGD------------------QSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred CCcceEEecCCcceEEeec------------------CCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec
Confidence 35678888886 5677754 34678888876553322 234445667889999999655555
Q ss_pred CCCCEEEEEEecCCC-CcceeEEec--cCCCCCcceeeCCCCCEEEEEec
Q 023085 153 SWKFRCRKYWLKGER-KGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~-~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..++++++++-..+ .+...+... .-.++..-..+.+++++..++..
T Consensus 187 -nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 187 -NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred -CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 56778888875432 122222111 11123333556788877666654
No 124
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.98 E-value=0.042 Score=46.02 Aligned_cols=140 Identities=12% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCCC-cEEEEecCCeEEEEE--CCceEEE---------EeeCCccccCeEECCCCcEEEEeCCCc---eEEEccCC--c
Q 023085 1 MDKNG-VIYTATRDGWIKRLQ--DGTWVNW---------KFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG--V 63 (287)
Q Consensus 1 ~d~~G-~l~~~~~~g~i~~~~--~~~~~~~---------~~~~~~~~~~i~~d~dg~l~v~~~~~g---i~~~~~~g--~ 63 (287)
|.+|| .|..|+-+|-|-.|| +|+.+.- ........ .|.+.+|-.+..+....| +|++ .+| +
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIKvWri-~tG~Cl 298 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIKVWRI-ETGQCL 298 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEEEEEE-ecchHH
Confidence 45777 455666888888888 6655421 11122223 566666655544432333 3443 344 4
Q ss_pred EEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEc
Q 023085 64 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALS 142 (287)
Q Consensus 64 ~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~ 142 (287)
+.+... .-..+.++.+.+|+.-.++. .-+..+-.-..++|+. +-+-...++.+...|.
T Consensus 299 RrFdrA----HtkGvt~l~FSrD~SqiLS~-----------------sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 299 RRFDRA----HTKGVTCLSFSRDNSQILSA-----------------SFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred HHhhhh----hccCeeEEEEccCcchhhcc-----------------cccceEEEeccccchhHHHhcCccccccceEEc
Confidence 443211 11246778888877644431 1122233233455542 2233445677888899
Q ss_pred cCCCEEEEEeCCCCEEEEEEec
Q 023085 143 RDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+||..+.-+. ..+.+..|+.+
T Consensus 358 ~dG~~iisaS-sDgtvkvW~~K 378 (508)
T KOG0275|consen 358 DDGHHIISAS-SDGTVKVWHGK 378 (508)
T ss_pred CCCCeEEEec-CCccEEEecCc
Confidence 9998665554 45667777754
No 125
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.94 E-value=0.44 Score=46.44 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=85.9
Q ss_pred cEEEEecCCeEEEEE--CCceE-EEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~-~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
.|..++.+|.|..|+ +++.. .+........ ++++.+ ++.++++.... .|..++ .++ ...+.. ...
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~------~~~ 619 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT------KAN 619 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec------CCC
Confidence 344555788888888 33322 2222223334 788885 67766654443 466666 555 333321 123
Q ss_pred cceEEEc-CCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 78 ANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 78 ~~~l~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+..+.+. ++|.++++ +...+.|..||..+.. +..+.........+.|. +++.++.+ +.
T Consensus 620 v~~v~~~~~~g~~lat-----------------gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~-s~ 680 (793)
T PLN00181 620 ICCVQFPSESGRSLAF-----------------GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS-ST 680 (793)
T ss_pred eEEEEEeCCCCCEEEE-----------------EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE-EC
Confidence 4556654 45666664 2345678888876443 22222222234456665 56644444 45
Q ss_pred CCEEEEEEecCCCC----cceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.|..||+..... .....+. .-......++++++|.+.++...
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs~ 728 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGSE 728 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEeC
Confidence 67788888753210 1111221 11123455778888875555443
No 126
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.094 Score=46.05 Aligned_cols=160 Identities=19% Similarity=0.262 Sum_probs=82.2
Q ss_pred CeEECCCCcEEEEeCCC-------------c-eEEEccCC-cEEEeeecC----CccccccceEEEcCC-CcEEEEcCCC
Q 023085 37 GLTSTKEGHLIICDNAN-------------G-LHKVSEDG-VENFLSYVN----GSKLRFANDVVEASD-GSLYFTVSSS 96 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~-------------g-i~~~~~~g-~~~~~~~~~----~~~~~~~~~l~~d~~-g~l~v~~~~~ 96 (287)
.|++++||+|||+.... | ++++++.+ +..-.+... ...+..|.+++.++. |.||+++.+.
T Consensus 181 ~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~ 260 (399)
T COG2133 181 RLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP 260 (399)
T ss_pred cEEECCCCcEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence 58999999999996433 1 33444333 111111100 112456789999997 9999997664
Q ss_pred CCCCcceeeeeeccCCCceE--EEE-------eCCC---Cee-EE------eeccccccceEEEccCC------CEEEEE
Q 023085 97 KYLPHEYCLDILEGKPHGQL--LKY-------DPSS---NIT-TL------VADGFYFANGVALSRDE------DYVVVC 151 (287)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~v--~~~-------~~~~---~~~-~~------~~~~~~~~~~i~~~~~~------~~l~v~ 151 (287)
+-. .. .+++.....|.. |-+ ++.. ... .. .......|.|++|.... ..++|+
T Consensus 261 d~~-~~--~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~ 337 (399)
T COG2133 261 DAL-RG--PDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVG 337 (399)
T ss_pred Ccc-cC--cccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEE
Confidence 110 00 000100011111 111 0000 000 00 01112345788876421 248888
Q ss_pred eCCCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCEEEEEec
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.-.+-.+.+.+.+++.......+.. ...++|.++++.+||.|++++..
T Consensus 338 ~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~ 386 (399)
T COG2133 338 AHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ 386 (399)
T ss_pred eecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC
Confidence 7655556666555431122223332 23478999999999999999986
No 127
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.91 E-value=0.081 Score=49.07 Aligned_cols=146 Identities=10% Similarity=0.034 Sum_probs=83.1
Q ss_pred EeeCCccccCeEECCCCcEEEEeCCCc---eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcce
Q 023085 28 KFIDSQTLVGLTSTKEGHLIICDNANG---LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEY 103 (287)
Q Consensus 28 ~~~~~~~~~~i~~d~dg~l~v~~~~~g---i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~ 103 (287)
......|++.+.+.|-|..+++....+ +|-.+... .+.+. .++..+.++.++++.....+.
T Consensus 489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-----ghlsDV~cv~FHPNs~Y~aTG---------- 553 (707)
T KOG0263|consen 489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-----GHLSDVDCVSFHPNSNYVATG---------- 553 (707)
T ss_pred ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-----ccccccceEEECCcccccccC----------
Confidence 334445554566667665555432223 33332222 22221 234567788899887755542
Q ss_pred eeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC
Q 023085 104 CLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP 182 (287)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 182 (287)
..+..|-.||..+|. ++.+.........++++|.|++|--.+ ..+.|..||+..... ...+... .+..
T Consensus 554 -------SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~--v~~l~~H-t~ti 622 (707)
T KOG0263|consen 554 -------SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSL--VKQLKGH-TGTI 622 (707)
T ss_pred -------CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcc--hhhhhcc-cCce
Confidence 234456666655555 444555556667899999998655554 356788888765321 1111111 3346
Q ss_pred cceeeCCCCCEEEEEec
Q 023085 183 DNINLAPDGTFWIAIIK 199 (287)
Q Consensus 183 ~~i~~d~~G~lwv~~~~ 199 (287)
+.+.+..+|++.++...
T Consensus 623 ~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 623 YSLSFSRDGNVLASGGA 639 (707)
T ss_pred eEEEEecCCCEEEecCC
Confidence 77889999988887755
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.86 E-value=0.041 Score=51.50 Aligned_cols=138 Identities=14% Similarity=0.089 Sum_probs=82.5
Q ss_pred EEEEecCCeEEEEE--CCceE-EEE--eeCCccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWV-NWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~-~~~--~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~ 80 (287)
..+|+..|.|-+|| .|..+ .+. .....++.+++.|.-+++.++....|++.+- -.+.........+ ..+..
T Consensus 463 ~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~---~~~~~ 539 (910)
T KOG1539|consen 463 VFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG---SSITG 539 (910)
T ss_pred EEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC---CCcce
Confidence 45677889999999 44332 231 1223344499999999999998778988876 2331111111111 23445
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCR 159 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~ 159 (287)
+.......+++. .-..-.+..+|..+.++.+. .......+.++|+|||+.|..++ ....|.
T Consensus 540 iv~hr~s~l~a~-----------------~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr 601 (910)
T KOG1539|consen 540 IVYHRVSDLLAI-----------------ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIR 601 (910)
T ss_pred eeeeehhhhhhh-----------------hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEE
Confidence 555544443331 11233577777765554332 23345568899999999666554 567899
Q ss_pred EEEecC
Q 023085 160 KYWLKG 165 (287)
Q Consensus 160 ~~~~~~ 165 (287)
.||+..
T Consensus 602 ~wDlpt 607 (910)
T KOG1539|consen 602 TWDLPT 607 (910)
T ss_pred EEeccC
Confidence 999864
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.14 Score=48.56 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=84.9
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCcccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFA 78 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~ 78 (287)
+.+..++.++-|.+|. .+....+...-..|...++++.+|...++... .+|-+++ .+. ...+... -..+
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-----~apV 141 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-----DAPV 141 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-----CCce
Confidence 3567777888888888 33322111111122327788889976665433 4666666 555 3343222 1346
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc----c-----cceEEEccCCCEEE
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----F-----ANGVALSRDEDYVV 149 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~-----~~~i~~~~~~~~l~ 149 (287)
.+|.+++++.+.... ...|.|..|+.+++.+......+. . -.-++|+|++..+.
T Consensus 142 l~l~~~p~~~fLAvs-----------------s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVS-----------------SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLA 204 (933)
T ss_pred eeeeEcCCCCEEEEE-----------------ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEE
Confidence 789999999987752 346789999988776654433221 1 13467999977666
Q ss_pred EEeCCCCEEEEEEecC
Q 023085 150 VCESWKFRCRKYWLKG 165 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~ 165 (287)
+... .+.+..|+.++
T Consensus 205 ~~~~-d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 205 VPPV-DNTVKVYSRKG 219 (933)
T ss_pred eecc-CCeEEEEccCC
Confidence 6654 57788888764
No 130
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.83 E-value=0.18 Score=43.80 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=82.9
Q ss_pred CccccCeEECCCCcEEEEeCC---CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~---~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
+..+ -+.+.++|+..++... ..|+.+..++ ++..... .+ ....+..++..||.+-.++...
T Consensus 225 dEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vg-h~~~V~yi~wSPDdryLlaCg~------------ 289 (519)
T KOG0293|consen 225 DEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VG-HSQPVSYIMWSPDDRYLLACGF------------ 289 (519)
T ss_pred CcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ec-ccCceEEEEECCCCCeEEecCc------------
Confidence 3445 6777788875554322 2455555555 3332221 11 1234556788888887776422
Q ss_pred eccCCCceEEEEeCCCCeeEEee-cc-ccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcce
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNI 185 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (287)
...+..+|.++|...... .. ...+...++-|||..+ |+.+....+..++.++......+.... .....+
T Consensus 290 -----~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~-V~Gs~dr~i~~wdlDgn~~~~W~gvr~---~~v~dl 360 (519)
T KOG0293|consen 290 -----DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF-VTGSPDRTIIMWDLDGNILGNWEGVRD---PKVHDL 360 (519)
T ss_pred -----hHheeeccCCcchhhhhcccCcCCCcceeEEccCCcee-EecCCCCcEEEecCCcchhhccccccc---ceeEEE
Confidence 234777787777755432 22 2345667899999864 454556789999998765443332211 134578
Q ss_pred eeCCCCC-EEEEEec
Q 023085 186 NLAPDGT-FWIAIIK 199 (287)
Q Consensus 186 ~~d~~G~-lwv~~~~ 199 (287)
++..||+ +++.+..
T Consensus 361 ait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVD 375 (519)
T ss_pred EEcCCCcEEEEEecc
Confidence 8888885 4444433
No 131
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.77 E-value=0.29 Score=41.76 Aligned_cols=215 Identities=12% Similarity=0.057 Sum_probs=110.3
Q ss_pred EEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~ 80 (287)
|.+|+.+|.++.|+ ++...+.......+...=-+-|||+..++.+..| |...+ .+| +..+... .+. ....
T Consensus 163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~-e~~---~~~~ 238 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQA-EGL---ELPC 238 (399)
T ss_pred EEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccc-ccC---cCCc
Confidence 45666888888888 3333333333333321223567886544433444 55566 566 3333211 111 1123
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc------------ccccceEEEccCCCEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRDEDYV 148 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~~~~l 148 (287)
+.....+.+.+. +...+.++.++..+|++.....+ ......+.++.+-. |
T Consensus 239 ~~~~~~~~~~~~-----------------g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lp-L 300 (399)
T KOG0296|consen 239 ISLNLAGSTLTK-----------------GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLP-L 300 (399)
T ss_pred cccccccceeEe-----------------ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccc-h
Confidence 344444544442 11223344444444444333221 01112223333332 4
Q ss_pred EEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccccc
Q 023085 149 VVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 228 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (287)
..+....++|..||... .+++....... ...-+.......|+.++..
T Consensus 301 ~A~G~vdG~i~iyD~a~---~~~R~~c~he~-~V~~l~w~~t~~l~t~c~~----------------------------- 347 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAA---STLRHICEHED-GVTKLKWLNTDYLLTACAN----------------------------- 347 (399)
T ss_pred hhcccccceEEEEeccc---chhheeccCCC-ceEEEEEcCcchheeeccC-----------------------------
Confidence 44555668899999753 33333332111 1223445555567777765
Q ss_pred ccCCCceEEEEECCC-CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 229 ITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 229 ~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
+.|..+|.. |+.+..|+... -.+..+... +.++-++.-.-+...+|..
T Consensus 348 ------g~v~~wDaRtG~l~~~y~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 348 ------GKVRQWDARTGQLKFTYTGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ------ceEEeeeccccceEEEEecCc----hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 578888876 77788887533 235666554 7888888877777777765
No 132
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.75 E-value=0.34 Score=42.34 Aligned_cols=135 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred eEEEEeCCCCeeEEeec-------cccccceEEEc--c-CCCEEEEEeCCCCEEEEEEecCCCCc-----ceeEEeccCC
Q 023085 115 QLLKYDPSSNITTLVAD-------GFYFANGVALS--R-DEDYVVVCESWKFRCRKYWLKGERKG-----KLETFAENLP 179 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~-------~~~~~~~i~~~--~-~~~~l~v~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~ 179 (287)
.+|++++.++.++.+.. ....+.|+|+. + +|+.-.+.....+.+..|.+.....+ ..+.|. .+
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~ 207 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VG 207 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---S
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CC
Confidence 58899987787766532 22347899863 3 35532333344577888877521111 223332 34
Q ss_pred CCCcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC--C-cEEEEEECCCC
Q 023085 180 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--G-TIIRNLVDPTG 255 (287)
Q Consensus 180 ~~~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g-~~~~~~~~~~~ 255 (287)
+-+.+++.|. .|.||++... .+|.+|+.+ + ..-..+....+
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~-----------------------------------~GIW~y~Aep~~~~~~~~v~~~~g 252 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEED-----------------------------------VGIWRYDAEPEGGNDRTLVASADG 252 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETT-----------------------------------TEEEEEESSCCC-S--EEEEEBSS
T ss_pred CcceEEEEecccCCEEEecCc-----------------------------------cEEEEEecCCCCCCcceeeecccc
Confidence 4578888876 6899999986 488888643 2 22222221122
Q ss_pred -ccccceEEEEEe-----CCEEEEEecCCCeEEEEeC
Q 023085 256 -QLMSFVTSGLQV-----DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 256 -~~~~~~~~~~~~-----~g~l~i~~~~~~~i~~~~~ 286 (287)
.....+.++... .|.|.+++...+...+|+-
T Consensus 253 ~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 253 DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 234556555552 3689999999998888874
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.72 E-value=0.4 Score=42.77 Aligned_cols=135 Identities=13% Similarity=0.099 Sum_probs=80.8
Q ss_pred CcEEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccce
Q 023085 5 GVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~ 80 (287)
+.||+||..+.|.+=+ .+.+..........+.+++..++-.++++....+..++- ... ++.+.. ....+
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~-------d~~~~ 412 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIE-------DPAEC 412 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEec-------CceeE
Confidence 4699999766676655 445544443333333389999988888775444444433 333 333321 13356
Q ss_pred EEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEE
Q 023085 81 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRK 160 (287)
Q Consensus 81 l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~ 160 (287)
+.+++.|.+-+ ++..|..+.+|.++..+..+-.....-+-+.++|+|.++-+.. .++.|+.
T Consensus 413 ~~fhpsg~va~------------------Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyi 473 (626)
T KOG2106|consen 413 ADFHPSGVVAV------------------GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYI 473 (626)
T ss_pred eeccCcceEEE------------------eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEE
Confidence 77888885544 3445667777776544433333333445667899998766664 5677888
Q ss_pred EEecC
Q 023085 161 YWLKG 165 (287)
Q Consensus 161 ~~~~~ 165 (287)
|.++.
T Consensus 474 y~Vs~ 478 (626)
T KOG2106|consen 474 YRVSA 478 (626)
T ss_pred EEECC
Confidence 88763
No 134
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.65 E-value=0.33 Score=41.92 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=43.8
Q ss_pred ccceEEEccCCCEEEEEeCCC------CEEEEEEecCCCCcce---eEEe------c--cCCCCCcceeeCCCCC-EEEE
Q 023085 135 FANGVALSRDEDYVVVCESWK------FRCRKYWLKGERKGKL---ETFA------E--NLPGAPDNINLAPDGT-FWIA 196 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~~~~~~~---~~~~------~--~~~~~~~~i~~d~~G~-lwv~ 196 (287)
.+.+|++.+++. +||++... ..|++|+.++...... ..+. . ..+....+|++.++|+ ||++
T Consensus 86 D~Egi~~~~~g~-~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGS-FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCC-EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 567899966665 99999998 9999999875322221 1110 0 1222457799999998 9999
Q ss_pred Eec
Q 023085 197 IIK 199 (287)
Q Consensus 197 ~~~ 199 (287)
...
T Consensus 165 ~E~ 167 (326)
T PF13449_consen 165 MES 167 (326)
T ss_pred ECc
Confidence 976
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.63 E-value=0.17 Score=45.08 Aligned_cols=111 Identities=16% Similarity=0.228 Sum_probs=65.7
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec---cccccceEEEccCCCEEEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~v~ 151 (287)
.+.+......+||+-.+. +.....|-.+|..+-..+..+. ....=+.++++||.+ +.++
T Consensus 465 dnyiRSckL~pdgrtLiv-----------------GGeastlsiWDLAapTprikaeltssapaCyALa~spDak-vcFs 526 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIV-----------------GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFS 526 (705)
T ss_pred ccceeeeEecCCCceEEe-----------------ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeee
Confidence 345666667778864442 2223455566654222221111 112225788999998 5555
Q ss_pred eCCCCEEEEEEecCCCCcceeEEeccCCCCCcc---eeeCCCC-CEEEEEeccchhHHHHhh
Q 023085 152 ESWKFRCRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILN 209 (287)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~d~~G-~lwv~~~~~~~~~~~~~~ 209 (287)
....+.|.+||+.+.. ..+ .+.|.++| |.+..+| +||.+...++.+.|++-.
T Consensus 527 ccsdGnI~vwDLhnq~--~Vr----qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 527 CCSDGNIAVWDLHNQT--LVR----QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred eccCCcEEEEEcccce--eee----cccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence 5566789999985431 122 33445555 5556788 799999998888888743
No 136
>PTZ00420 coronin; Provisional
Probab=96.62 E-value=0.59 Score=43.45 Aligned_cols=103 Identities=6% Similarity=0.020 Sum_probs=62.0
Q ss_pred cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--e-------EEeeccccccceEEEccCC
Q 023085 76 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--T-------TLVADGFYFANGVALSRDE 145 (287)
Q Consensus 76 ~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~-------~~~~~~~~~~~~i~~~~~~ 145 (287)
..+.++++.++ +.+.++. ..++.|..++..++. . ..+.........++|+|++
T Consensus 75 ~~V~~lafsP~~~~lLASg-----------------S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASG-----------------SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred CCEEEEEEcCCCCCEEEEE-----------------eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 46778888886 6666652 234566666654321 1 1122223345678899998
Q ss_pred CEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.++....+.|..||+...+. ...+. .......++++++|++.+++..
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~--~~~i~--~~~~V~SlswspdG~lLat~s~ 187 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKR--AFQIN--MPKKLSSLKWNIKGNLLSGTCV 187 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcE--EEEEe--cCCcEEEEEECCCCCEEEEEec
Confidence 86666666678899999864321 11111 1234567888999998876654
No 137
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.60 E-value=0.45 Score=41.80 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=61.0
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCC-ccccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNG-SKLRF 77 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~-~~~~~ 77 (287)
.+|+||+++.+|.+++++ +|+......... ....+-.+-.++.+|+.+...-++.++ .+|...+...... .....
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 479999999999999999 566544333333 011133445688999986445689998 5673222211111 11111
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT 127 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 127 (287)
..... ..++.+|++..+ . .+.++.+++.+|...
T Consensus 190 ~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~~ 222 (370)
T COG1520 190 YGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTLK 222 (370)
T ss_pred ccCce-eecceEEEecCC---------------C-cceEEEEEccCCcEe
Confidence 11222 557888885321 0 235777777666544
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.59 E-value=0.36 Score=40.54 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=37.7
Q ss_pred CCCC-cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC
Q 023085 2 DKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG 62 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g 62 (287)
.+-| .|-+|-.+|+|..|+ +-+..++...--.|+.+++..+||+..++... .-+-.+| .+|
T Consensus 32 s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g 97 (405)
T KOG1273|consen 32 SRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG 97 (405)
T ss_pred ccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence 3456 355667899999998 43333333333345558899999998877544 3344455 444
No 139
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.58 E-value=0.12 Score=45.60 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=91.8
Q ss_pred ecCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEe-CCCceEEEc-cCC--cEEEeeecCCccccccceEEE
Q 023085 11 TRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICD-NANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 11 ~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~-~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~ 83 (287)
+.+.-|--|| +|+...-......|. .+.+.||+ +++++. ..+.|..+| +.+ +..+ +..+..++.+.+
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-----d~hLg~i~~i~F 350 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-----DRHLGAILDITF 350 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-----HhhhhheeeeEE
Confidence 3444455555 454433333334455 77788888 776664 335688888 777 3333 223457788888
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eecccc-ccceEEEccCCCEEEEEeCCCCEEEEE
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFY-FANGVALSRDEDYVVVCESWKFRCRKY 161 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~-~~~~i~~~~~~~~l~v~~~~~~~l~~~ 161 (287)
-++|.-+|+.+. .+.+..++-+...... ....-. .---+...|.+. .+.+.+..+.|..|
T Consensus 351 ~~~g~rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 351 VDEGRRFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIF 412 (503)
T ss_pred ccCCceEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceecCCCCC-eehhhccCceEEEE
Confidence 888888886322 3344444433221111 111111 112345667776 77777888889988
Q ss_pred EecCC-CCcceeEEec-cCCCCCcceeeCCCCCEEEEEec
Q 023085 162 WLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 162 ~~~~~-~~~~~~~~~~-~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
....+ ...+.+.|.. ...|++..+.+.+||...++...
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds 452 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS 452 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC
Confidence 86432 1122222321 24466777778888866655554
No 140
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.56 E-value=0.23 Score=43.99 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCCcEEEEecCCeEEEEE-CCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC--cE--EEeeecCCccc
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VE--NFLSYVNGSKL 75 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~--~~~~~~~~~~~ 75 (287)
++|.+++....|.+++-. +|. ++....+......++...++|.+|++....++++-..+| .+ .+.........
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~ 327 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRG 327 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCC
Confidence 456666666667666654 443 344443333333377888999999998666666654454 21 33222111112
Q ss_pred cccceEEEcCCCcEEEE
Q 023085 76 RFANDVVEASDGSLYFT 92 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~ 92 (287)
..+.++...+++++|++
T Consensus 328 ~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 328 FGILDVGYRSKKEAWAA 344 (398)
T ss_pred cceEEEEEcCCCcEEEE
Confidence 34677888889999996
No 141
>PTZ00420 coronin; Provisional
Probab=96.55 E-value=0.66 Score=43.15 Aligned_cols=111 Identities=2% Similarity=-0.131 Sum_probs=62.4
Q ss_pred CeEECCC-CcEEEEeCC-CceEEEc-cCC-c--EEEee--ecCCccccccceEEEcCCCcEE-EEcCCCCCCCcceeeee
Q 023085 37 GLTSTKE-GHLIICDNA-NGLHKVS-EDG-V--ENFLS--YVNGSKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~d-g~l~v~~~~-~gi~~~~-~~g-~--~~~~~--~~~~~~~~~~~~l~~d~~g~l~-v~~~~~~~~~~~~~~~~ 107 (287)
.+++.++ +++.++... ..|..++ +++ . ..+.. .........+..+++++++... ++
T Consensus 79 ~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaS--------------- 143 (568)
T PTZ00420 79 DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCS--------------- 143 (568)
T ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEE---------------
Confidence 7888886 565555333 3455555 433 1 11100 0001112457788999887644 33
Q ss_pred eccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
+..++.|..+|..+++.............+.|+++|+.| ++....+.|..||+..
T Consensus 144 --gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lL-at~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 144 --SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLL-SGTCVGKHMHIIDPRK 198 (568)
T ss_pred --EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEE-EEEecCCEEEEEECCC
Confidence 123467777887766533222222345678899999855 4444567899999754
No 142
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.51 E-value=0.093 Score=46.59 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=92.3
Q ss_pred CCC-cEEEEecCCeEEEEE-CCceEEEE----eeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCC
Q 023085 3 KNG-VIYTATRDGWIKRLQ-DGTWVNWK----FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNG 72 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~-~~~~~~~~----~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~ 72 (287)
+|| .|.+|.....|..|| .....++. .....-+ .+++.+|-+|-++--. +.|.++| .+. ++.+....
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht-- 551 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-- 551 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC--
Confidence 455 466666656666666 21111111 1112235 7888899988766433 4577777 665 44443222
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc-cccceEEEccCCCEEEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVV 150 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~v 150 (287)
....+|.+..+| +||- +..++.|-++|..++..- ....+ +..-.+...|.++.|.|
T Consensus 552 ---DGascIdis~dGtklWT------------------GGlDntvRcWDlregrql-qqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 552 ---DGASCIDISKDGTKLWT------------------GGLDNTVRCWDLREGRQL-QQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ---CCceeEEecCCCceeec------------------CCCccceeehhhhhhhhh-hhhhhhhhheecccCCCccceee
Confidence 244678888888 5777 334567888988654321 11111 22334556688886666
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.-. ++.++.....+++ +.. ...-....-.+.+..-|+.|+++..
T Consensus 610 GMe-ns~vevlh~skp~--kyq--lhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 610 GME-NSNVEVLHTSKPE--KYQ--LHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred ecc-cCcEEEEecCCcc--cee--ecccccEEEEEEecccCceeeecCc
Confidence 644 4456665543321 111 1111223445777888999999976
No 143
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.45 E-value=0.18 Score=43.26 Aligned_cols=101 Identities=20% Similarity=0.209 Sum_probs=65.4
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeC
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
...++.+.+.+|++...+ .+ -+..|-.++..+|++-. +-......+.+++++|.+ |.|+.+
T Consensus 367 q~lVn~V~fSPd~r~IAS-aS----------------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~S 428 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIAS-AS----------------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGS 428 (480)
T ss_pred hhheeeEEECCCccEEEE-ee----------------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcC
Confidence 346888999999885553 22 23456666767776433 333556678899999987 888888
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCCCCCccee-e--CCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLPGAPDNIN-L--APDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~--d~~G~lwv~~~~ 199 (287)
....|-.|++..++ ...+++|..+.+. + .+||..-.+...
T Consensus 429 kDsTLKvw~V~tkK------l~~DLpGh~DEVf~vDwspDG~rV~sggk 471 (480)
T KOG0271|consen 429 KDSTLKVWDVRTKK------LKQDLPGHADEVFAVDWSPDGQRVASGGK 471 (480)
T ss_pred CCceEEEEEeeeee------ecccCCCCCceEEEEEecCCCceeecCCC
Confidence 88899999975432 1224555444433 3 478876655544
No 144
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.41 E-value=0.58 Score=40.90 Aligned_cols=139 Identities=16% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCCC-cEEEEec---CCeEEEEE--CCceEEEEeeCC-ccccCeEECCCC-cEEEEeCCCceEEEc-cCC-cEEEeeecC
Q 023085 2 DKNG-VIYTATR---DGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEG-HLIICDNANGLHKVS-EDG-VENFLSYVN 71 (287)
Q Consensus 2 d~~G-~l~~~~~---~g~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g-~~~~~~~~~ 71 (287)
..|| .|.|++. ...++.++ +++.++....++ ... +..+.++. .+|..-..+.|.+++ .++ .+.+.....
T Consensus 44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 3567 5666652 45788888 788888877543 334 55555655 454333356899999 776 545433222
Q ss_pred CccccccceEEEcCCCcEEEEcCCC--CCC-Cc--ceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc
Q 023085 72 GSKLRFANDVVEASDGSLYFTVSSS--KYL-PH--EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 143 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~~~~~--~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (287)
+-. .. -..+++++++.++...-. ++. +. .+..++..+....+|+.+|.++|+.+.+........-+.++|
T Consensus 123 ~~~-g~-gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 123 DWK-GY-GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp TEE-EE-EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred ccc-cc-cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence 110 01 122345577766542111 110 11 122334445556789999999999887755433333334444
No 145
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.41 E-value=0.061 Score=49.40 Aligned_cols=68 Identities=24% Similarity=0.327 Sum_probs=46.7
Q ss_pred ccccceEEEccCCCEEEEEeCCCC-------------------EEEEEEecCCC----CcceeEEecc------------
Q 023085 133 FYFANGVALSRDEDYVVVCESWKF-------------------RCRKYWLKGER----KGKLETFAEN------------ 177 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~~~~-------------------~l~~~~~~~~~----~~~~~~~~~~------------ 177 (287)
+..|.++.++|....+|++.+... .|++++.++.. ..+...+...
T Consensus 349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~ 428 (524)
T PF05787_consen 349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN 428 (524)
T ss_pred ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence 345789999998778999976554 78888876431 1122222211
Q ss_pred -----CCCCCcceeeCCCCCEEEEEecc
Q 023085 178 -----LPGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 178 -----~~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
.-..|+||++|++|+|||++-..
T Consensus 429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 429 KCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred cccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 11369999999999999999763
No 146
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.37 E-value=0.016 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.080 Sum_probs=30.7
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.....|+++++++.++.||+++.....|.++++++
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 45678999999999999999999999999998765
No 147
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.31 E-value=0.4 Score=37.99 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEE
Q 023085 41 TKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK 118 (287)
Q Consensus 41 d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~ 118 (287)
|..+.-+.++ ..|++++ .+. ...+..... ..+.+++..++|+-++.-. +.....+..
T Consensus 29 ~~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~---------------g~~~~~v~l 87 (194)
T PF08662_consen 29 DKSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIY---------------GSMPAKVTL 87 (194)
T ss_pred ccCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEE---------------ccCCcccEE
Confidence 3444444433 2577776 444 444422211 2378899999987543211 112235666
Q ss_pred EeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEE
Q 023085 119 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 196 (287)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~ 196 (287)
+|.+...+..+. ....+.+.++|+|+.+.++... .+.|..||.... ..+..........++.+++|+..++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence 666533343332 2345789999999988888754 346888886521 1222112223566888999998887
Q ss_pred Eec
Q 023085 197 IIK 199 (287)
Q Consensus 197 ~~~ 199 (287)
...
T Consensus 161 a~t 163 (194)
T PF08662_consen 161 ATT 163 (194)
T ss_pred EEe
Confidence 765
No 148
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.42 Score=42.05 Aligned_cols=207 Identities=15% Similarity=0.114 Sum_probs=104.1
Q ss_pred cccCeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 34 TLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 34 ~~~~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
|++.++.+++|.+.++. ....||... .+| +..... ..-..++.+.+..||..+|+.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~----aHYQ~ITcL~fs~dgs~iiTg----------------- 141 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS----AHYQSITCLKFSDDGSHIITG----------------- 141 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH----hhccceeEEEEeCCCcEEEec-----------------
Confidence 34478888999877775 445688887 777 332211 112467889999999999862
Q ss_pred CCCceEEEEeC------CC-Ce---eEEeeccccccceEEEccCC--CEEEEEeCCCCEEEEEEecCCCCcceeEEeccC
Q 023085 111 KPHGQLLKYDP------SS-NI---TTLVADGFYFANGVALSRDE--DYVVVCESWKFRCRKYWLKGERKGKLETFAENL 178 (287)
Q Consensus 111 ~~~~~v~~~~~------~~-~~---~~~~~~~~~~~~~i~~~~~~--~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 178 (287)
..++.|..|.. .. .. +..+....-....+.+++-| ..+|-+. ....+..||+..+.+- ..+ ..
T Consensus 142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LL--lti--~f 216 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLL--LTI--TF 216 (476)
T ss_pred CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceee--EEE--ec
Confidence 22344444421 10 01 11111111112233333321 2355543 4567788888654221 111 23
Q ss_pred CCCCcceeeCCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCcc
Q 023085 179 PGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL 257 (287)
Q Consensus 179 ~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~ 257 (287)
+..+..+++|+-. .+|+++..+..-+..+..-.++ ..+.....+++++..+..+....+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~------------------~~~v~~k~~~~~~t~~~~~~Gh~~-- 276 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ------------------SAGVNQKGRHEENTQINVLVGHEN-- 276 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcc------------------cccccccccccccceeeeeccccC--
Confidence 3457789999844 6888886632111111000000 000011122344445555543222
Q ss_pred ccceEEEEEe-CCEEEEEecCCCeEEEEeC
Q 023085 258 MSFVTSGLQV-DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 258 ~~~~~~~~~~-~g~l~i~~~~~~~i~~~~~ 286 (287)
-..++++... ||+|.+.+-..+.|.+-|+
T Consensus 277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred CcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 1478888886 7777776666666655543
No 149
>PRK13684 Ycf48-like protein; Provisional
Probab=96.23 E-value=0.7 Score=40.05 Aligned_cols=171 Identities=11% Similarity=0.117 Sum_probs=80.8
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceEEEEeeC---CccccCeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCcccc
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~ 76 (287)
+.+.|+....|.|++=. .| .++...... ..+...+.+.+ +..|++.....|++-...| ++.+.... .. ..
T Consensus 56 ~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~-~~-~~ 132 (334)
T PRK13684 56 PNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLISISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSE-KL-PG 132 (334)
T ss_pred CCcEEEEECCCEEEEEcCCCCCceECccCCcccccceeeeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCc-CC-CC
Confidence 34555444566777655 33 344332211 11222555553 4577775444466654434 55542110 01 12
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+..+....++.+|+. ...+.|++-+.....++.+... ....+.+.+.+++. +++.. ..
T Consensus 133 ~~~~i~~~~~~~~~~~------------------g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g-~~ 192 (334)
T PRK13684 133 SPYLITALGPGTAEMA------------------TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVS-SR 192 (334)
T ss_pred CceEEEEECCCcceee------------------eccceEEEECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEe-CC
Confidence 3344444444555653 1345677665443344443322 22345677777765 33333 23
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.+++-..++. ...............++++.++|++|+....
T Consensus 193 G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 193 GNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred ceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 45555321221 1121121112224567888888999998765
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.21 E-value=1 Score=41.69 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=39.3
Q ss_pred CCcEEEEeCCCceEEEc-cCCcEEEeeecCCc-cc-c------ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 43 EGHLIICDNANGLHKVS-EDGVENFLSYVNGS-KL-R------FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 43 dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~-~~-~------~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
+|.||+++....|+.+| .+|........... .. . ...++++. ++.+|++ ...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~------------------t~d 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFG------------------TLD 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEE------------------cCC
Confidence 68999988666799999 77722221111100 00 0 01223333 4677774 245
Q ss_pred ceEEEEeCCCCeeEEe
Q 023085 114 GQLLKYDPSSNITTLV 129 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~ 129 (287)
+.|+.+|.++|++..-
T Consensus 130 g~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 130 ARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEEECCCCCEEee
Confidence 6899999988887543
No 151
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.21 E-value=0.48 Score=40.66 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=61.5
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC---------CEEEEEEecCCCCcceeEEecc-----CC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK---------FRCRKYWLKGERKGKLETFAEN-----LP 179 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~---------~~l~~~~~~~~~~~~~~~~~~~-----~~ 179 (287)
+.++.+|.+++++.-.......++ ++++|+++.+|++++.= +-|..||..+-+ .+.+..... ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~-~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS-PTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-EEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-ccceEecCCcchheec
Confidence 589999988887644333333334 67899999999988621 125566654321 111111211 11
Q ss_pred CCCcceeeCCCCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCC
Q 023085 180 GAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTG 255 (287)
Q Consensus 180 ~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~ 255 (287)
..+..+++..||+ ++|..... ...|..+|.. .+.+..+..|.+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TP---------------------------------a~SVtVVDl~~~kvv~ei~~PGC 139 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTP---------------------------------ATSVTVVDLAAKKVVGEIDTPGC 139 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESS---------------------------------SEEEEEEETTTTEEEEEEEGTSE
T ss_pred ccccceEEccCCcEEEEEccCC---------------------------------CCeEEEEECCCCceeeeecCCCE
Confidence 2456677777774 77777652 3578888865 667777777653
No 152
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.16 E-value=0.065 Score=48.48 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=45.2
Q ss_pred cccceEEEccCCCEEEEEeCCCC----------------EEEEEEecCC----CCcceeEEecc----C-----------
Q 023085 134 YFANGVALSRDEDYVVVCESWKF----------------RCRKYWLKGE----RKGKLETFAEN----L----------- 178 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~----------------~l~~~~~~~~----~~~~~~~~~~~----~----------- 178 (287)
..|..+++.|....+|++-+++. +|++|-.... +..+...|... .
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 34778899988777998877544 5777765432 22233444321 0
Q ss_pred --CCCCcceeeCCCCCEEEEEecc
Q 023085 179 --PGAPDNINLAPDGTFWIAIIKL 200 (287)
Q Consensus 179 --~~~~~~i~~d~~G~lwv~~~~~ 200 (287)
-+.|++|++|+.|+||+++...
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~ 520 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGS 520 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCC
Confidence 1239999999999999999763
No 153
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.13 E-value=0.73 Score=39.22 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=69.3
Q ss_pred CcEEEEecCCeEEEEEC-C-ceEEEEeeCCcc----ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccc
Q 023085 5 GVIYTATRDGWIKRLQD-G-TWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~~-~-~~~~~~~~~~~~----~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
.+-|+....+.|++=.+ | .++........+ ...+.+. +...|++... +++... ..| .+.+... ... .
T Consensus 28 ~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~~-g~ll~T~DgG~tW~~v~l~-~~l-p 103 (302)
T PF14870_consen 28 NHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGEP-GLLLHTTDGGKTWERVPLS-SKL-P 103 (302)
T ss_dssp S-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEET-TEEEEESSTTSS-EE-----TT--S
T ss_pred CEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcCC-ceEEEecCCCCCcEEeecC-CCC-C
Confidence 34454444555555442 2 344333222221 2144443 3467777533 554444 444 5555311 111 1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+..+....++.++++. ..+.||+-.-....++.+. ........+..++||+++.|+.
T Consensus 104 gs~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~-- 163 (302)
T PF14870_consen 104 GSPFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS-- 163 (302)
T ss_dssp S-EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEET--
T ss_pred CCeeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC--
Confidence 234455554556665531 2356776654433444433 2233345566778998555553
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+++-.-.+.. ...........+...|.+++++.||+.+..
T Consensus 164 ~G~~~~s~~~G~~--~w~~~~r~~~~riq~~gf~~~~~lw~~~~G 206 (302)
T PF14870_consen 164 RGNFYSSWDPGQT--TWQPHNRNSSRRIQSMGFSPDGNLWMLARG 206 (302)
T ss_dssp TSSEEEEE-TT-S--S-EEEE--SSS-EEEEEE-TTS-EEEEETT
T ss_pred cccEEEEecCCCc--cceEEccCccceehhceecCCCCEEEEeCC
Confidence 3445443222211 122222122235678999999999998865
No 154
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.15 Score=43.87 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=80.2
Q ss_pred cEEEEecCCeEEEEECC----ceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccc
Q 023085 6 VIYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
+|.-|+++..++.|+.. -.++........+ .+.+.||+++.+.... +.|-..+ .+| +..+.. ....
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-----Hv~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-----HVAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-----ccce
Confidence 57777788888888721 2223333333445 7889999986665433 4555566 667 444432 1346
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEEeCCCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
++.++...|.+|.++.+. +..|-.++.+++++..-.+ .......+-++|||+. |+..+.+
T Consensus 412 VYqvawsaDsRLlVS~Sk-----------------DsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r--V~sggkd 472 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSK-----------------DSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR--VASGGKD 472 (480)
T ss_pred eEEEEeccCccEEEEcCC-----------------CceEEEEEeeeeeecccCCCCCceEEEEEecCCCce--eecCCCc
Confidence 788999999999997432 3455555545455443222 2334567778999974 4445567
Q ss_pred EEEEEE
Q 023085 157 RCRKYW 162 (287)
Q Consensus 157 ~l~~~~ 162 (287)
++++++
T Consensus 473 kv~~lw 478 (480)
T KOG0271|consen 473 KVLRLW 478 (480)
T ss_pred eEEEee
Confidence 777765
No 155
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.09 E-value=0.64 Score=43.62 Aligned_cols=140 Identities=14% Similarity=0.066 Sum_probs=75.7
Q ss_pred CeEECCCCcEEEEeCCCc--eEEEccCC-cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANG--LHKVSEDG-VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g--i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+|...+++.|+-+...+. ||....+. +..+.. ..+++++++.|. .+.|++. .-
T Consensus 374 DlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H------ndfVTcVaFnPvDDryFiSG-----------------SL 430 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH------NDFVTCVAFNPVDDRYFISG-----------------SL 430 (712)
T ss_pred ecccccCCeeEeccccccEEeecCCCcceeeEEec------CCeeEEEEecccCCCcEeec-----------------cc
Confidence 344455555555544432 33333333 444422 357899999984 5666652 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEecc-----CCCCCcceee
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAEN-----LPGAPDNINL 187 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~ 187 (287)
++.|-.++....++......-.....+++.|||+...|... .+.+..|+..+.++.....+... ....+.|+-+
T Consensus 431 D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 431 DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 44444444443555444333356678999999997777764 56677777654432221111100 1123566665
Q ss_pred CCCC--CEEEEEecc
Q 023085 188 APDG--TFWIAIIKL 200 (287)
Q Consensus 188 d~~G--~lwv~~~~~ 200 (287)
.+.. .|.|++...
T Consensus 510 ~p~~~~~vLVTSnDS 524 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDS 524 (712)
T ss_pred cCCCCCeEEEecCCC
Confidence 4321 588888763
No 156
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.06 E-value=0.9 Score=39.63 Aligned_cols=137 Identities=18% Similarity=0.195 Sum_probs=73.7
Q ss_pred CeEECCCCcEEEEeCCCceEEE-c-cCCcEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKV-S-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~-~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.+++.|+|+...+....--+++ | .++.+.+.. .| ....+.++++.++|.|..+... ..-+
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q--EG-Hs~~v~~iaf~~DGSL~~tGGl---------------D~~~ 327 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ--EG-HSKGVFSIAFQPDGSLAATGGL---------------DSLG 327 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhh--cc-cccccceeEecCCCceeeccCc---------------cchh
Confidence 6777888876665433222222 2 333111111 01 2246789999999999886211 0113
Q ss_pred eEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC-CC
Q 023085 115 QLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GT 192 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-G~ 192 (287)
.|| |..+|....+ ........++.|+|.|- ...+.+..+.+.+||+...+. ...+ ..-.+....+.+.++ |+
T Consensus 328 RvW--DlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~--ly~i-pAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 328 RVW--DLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE--LYTI-PAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred hee--ecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc--ceec-ccccchhhheEecccCCe
Confidence 454 4455654443 44556678899999885 555556667788888754321 1111 111123456777774 44
Q ss_pred EEEEE
Q 023085 193 FWIAI 197 (287)
Q Consensus 193 lwv~~ 197 (287)
..+++
T Consensus 402 fL~Ta 406 (459)
T KOG0272|consen 402 FLVTA 406 (459)
T ss_pred EEEEc
Confidence 44444
No 157
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.00 E-value=0.033 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.4
Q ss_pred cceEEEEEe-CCEEEEEecCCCeEEEE
Q 023085 259 SFVTSGLQV-DNHLYVISLTSNFIGKV 284 (287)
Q Consensus 259 ~~~~~~~~~-~g~l~i~~~~~~~i~~~ 284 (287)
..+.+++.+ +|+|||+...+.+|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 457888885 79999999999999886
No 158
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.18 Score=39.93 Aligned_cols=101 Identities=23% Similarity=0.325 Sum_probs=60.4
Q ss_pred CccccCeEECCCCcEEEEeCCCceEEEccCC---cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 108 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g---~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~ 108 (287)
+..+ +++.|.+ +||.++...-+...|+.. ...+.-...+.|....|.+..- +|.+|.- .|.
T Consensus 131 GeGW-gLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyAN---------Vw~---- 194 (262)
T COG3823 131 GEGW-GLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYAN---------VWQ---- 194 (262)
T ss_pred Ccce-eeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEe---------eee----
Confidence 4456 7766643 588887555566666433 2333234455666666666443 5655541 111
Q ss_pred ccCCCceEEEEeCCCCeeEEeec--c-----------ccccceEEEccCCCEEEEEe
Q 023085 109 EGKPHGQLLKYDPSSNITTLVAD--G-----------FYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 109 ~~~~~~~v~~~~~~~~~~~~~~~--~-----------~~~~~~i~~~~~~~~l~v~~ 152 (287)
...+.|++|++|++...-. + ..-.|||+++|++..+|++.
T Consensus 195 ----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 ----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 2368999999998765311 1 12468999999988888874
No 159
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=95.92 E-value=0.82 Score=38.05 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred CCcEEEEecCCeEEEEE--CCc-eEEEEeeCCccccCeEECC-CCcEEEEeCCC-ceEEEc-cCC--cEEEeeecCCccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKL 75 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~-~~~~~~~~~~~~~~i~~d~-dg~l~v~~~~~-gi~~~~-~~g--~~~~~~~~~~~~~ 75 (287)
|+.|..++.+.....|+ +|+ ...+....+... ++.+.| +++.+|.-.-. --...| +.+ .+.+... .
T Consensus 156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh-----e 229 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH-----E 229 (343)
T ss_pred CCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeeccc-----c
Confidence 67788888777777788 443 334444445556 777888 88888874332 234455 566 5554322 2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEEeecc--ccccceEEEccCCCEEEEEe
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG--FYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~--~~~~~~i~~~~~~~~l~v~~ 152 (287)
..++.+.+-|+|.-+.+.+. ++..-.||.+.+ ++..+... ....+.++|+.-|+.||...
T Consensus 230 sDINsv~ffP~G~afatGSD-----------------D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFATGSD-----------------DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred cccceEEEccCCCeeeecCC-----------------CceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 46889999999998886332 344445555433 45444432 23457889999999777653
Q ss_pred CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 153 SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
....+..||.=. ++.......-.++..++.+.+||.
T Consensus 293 -~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 -DDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred -cCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCc
Confidence 456788888421 211111112223455666777773
No 160
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.63 Score=38.76 Aligned_cols=150 Identities=14% Similarity=0.154 Sum_probs=78.9
Q ss_pred CCCCCcEEEEecC------CeEEEEE-CCceEEEEee---CCccccCeEECCCCcEEEEeCCCc----------------
Q 023085 1 MDKNGVIYTATRD------GWIKRLQ-DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANG---------------- 54 (287)
Q Consensus 1 ~d~~G~l~~~~~~------g~i~~~~-~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~~~~~g---------------- 54 (287)
|.+||.+..+|.+ |-|-.|+ ...+.+..+. .-.|. .+.+-+||++.+...+ |
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanG-GIethpdfgR~~lNlds 198 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANG-GIETHPDFGRTELNLDS 198 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCC-ceecccccCccccchhh
Confidence 4678977777733 5556666 4444444332 23455 7888899987665312 2
Q ss_pred ----eEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC--ceEEEEeCCCCe
Q 023085 55 ----LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH--GQLLKYDPSSNI 125 (287)
Q Consensus 55 ----i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~ 125 (287)
+..++ .+| +++.. ........++..+..+.+|++|+.... . +... --|.-...+++.
T Consensus 199 MePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgtvwfgcQy--------~-----G~~~d~ppLvg~~~~g~~ 264 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGTVWFGCQY--------R-----GPRNDLPPLVGHFRKGEP 264 (366)
T ss_pred cCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCcEEEEEEe--------e-----CCCccCCcceeeccCCCc
Confidence 23333 344 22211 111123457788999999999997432 0 0000 012211122233
Q ss_pred eEEeecc-------ccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 126 TTLVADG-------FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 126 ~~~~~~~-------~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
++.+.-+ -.+.-.|+..-+.+.+-++...+++...+|.+.+
T Consensus 265 l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG 312 (366)
T COG3490 265 LEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATG 312 (366)
T ss_pred CcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCC
Confidence 3322111 1223456666555566677777788888887654
No 161
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.88 E-value=2 Score=42.05 Aligned_cols=142 Identities=12% Similarity=0.073 Sum_probs=73.6
Q ss_pred CCCCCc-EEEEecCCeEEEEE-CCc-----eE---EEEeeCCccccCeEECCC-CcEEEE-eCCCceEEEc-cCC--cEE
Q 023085 1 MDKNGV-IYTATRDGWIKRLQ-DGT-----WV---NWKFIDSQTLVGLTSTKE-GHLIIC-DNANGLHKVS-EDG--VEN 65 (287)
Q Consensus 1 ~d~~G~-l~~~~~~g~i~~~~-~~~-----~~---~~~~~~~~~~~~i~~d~d-g~l~v~-~~~~gi~~~~-~~g--~~~ 65 (287)
|+++|. |..+..++.|..|+ ... .. ........+...++..+. +++.++ ...+.|..+| .++ +..
T Consensus 491 fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~ 570 (793)
T PLN00181 491 FDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTE 570 (793)
T ss_pred ECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 356775 44555788888887 211 00 000111122225666653 444443 3333455566 555 333
Q ss_pred EeeecCCccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEc-c
Q 023085 66 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS-R 143 (287)
Q Consensus 66 ~~~~~~~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~-~ 143 (287)
+.. ....+.++++++ ++.++++. ..++.|..+|..++..............+.+. +
T Consensus 571 ~~~-----H~~~V~~l~~~p~~~~~L~Sg-----------------s~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~ 628 (793)
T PLN00181 571 MKE-----HEKRVWSIDYSSADPTLLASG-----------------SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSE 628 (793)
T ss_pred ecC-----CCCCEEEEEEcCCCCCEEEEE-----------------cCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCC
Confidence 311 123578888885 67777752 23567777877655432222212233445564 4
Q ss_pred CCCEEEEEeCCCCEEEEEEecC
Q 023085 144 DEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 144 ~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
++..+. +.+..+.|..||+..
T Consensus 629 ~g~~la-tgs~dg~I~iwD~~~ 649 (793)
T PLN00181 629 SGRSLA-FGSADHKVYYYDLRN 649 (793)
T ss_pred CCCEEE-EEeCCCeEEEEECCC
Confidence 566444 445667899999754
No 162
>PTZ00421 coronin; Provisional
Probab=95.86 E-value=1.4 Score=40.35 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=59.1
Q ss_pred cccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--------eEEeeccccccceEEEccCCC
Q 023085 76 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--------TTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 76 ~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~ 146 (287)
..+.++++++ ++.++++. ..++.|..|+..++. +..+.........++|+|++.
T Consensus 76 ~~V~~v~fsP~d~~~LaSg-----------------S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTA-----------------SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM 138 (493)
T ss_pred CCEEEEEEcCCCCCEEEEE-----------------eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC
Confidence 3577888888 67766642 234566666654332 112222223456688999764
Q ss_pred EEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 147 YVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.++....+.|..||+...+ ....+. .-......+++.++|++.+++..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~--~~~~l~-~h~~~V~sla~spdG~lLatgs~ 188 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGK--AVEVIK-CHSDQITSLEWNLDGSLLCTTSK 188 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCe--EEEEEc-CCCCceEEEEEECCCCEEEEecC
Confidence 455555567789999986432 111221 11223566788888887666544
No 163
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.82 E-value=1 Score=38.51 Aligned_cols=192 Identities=10% Similarity=0.088 Sum_probs=101.5
Q ss_pred CccccCeEECCCCcEEEEeCC-C-ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeee
Q 023085 32 SQTLVGLTSTKEGHLIICDNA-N-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI 107 (287)
Q Consensus 32 ~~~~~~i~~d~dg~l~v~~~~-~-gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~ 107 (287)
.... .++.+|+.+ |+++.+ . --+..+ .+| +....... -.++..+.+.-+|.+..|
T Consensus 65 ~svF-avsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgH----KDSVt~~~FshdgtlLAT--------------- 123 (399)
T KOG0296|consen 65 DSVF-AVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGH----KDSVTCCSFSHDGTLLAT--------------- 123 (399)
T ss_pred CceE-EEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCC----CCceEEEEEccCceEEEe---------------
Confidence 3344 677888445 444433 1 123333 455 22221111 246788889999998886
Q ss_pred eccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 108 LEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
+..+|.|..+...++...... .......-+.+.|.+. ++.+.+..+.+|.|.+... ...+.+... ......=.
T Consensus 124 --GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~Gh-~~~ct~G~ 197 (399)
T KOG0296|consen 124 --GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSGH-NSPCTCGE 197 (399)
T ss_pred --cCCCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecCC-CCCccccc
Confidence 233566666666655544332 2333334456788787 5556666788999988643 334444321 11111122
Q ss_pred eCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEECCCCccc-----cc
Q 023085 187 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLM-----SF 260 (287)
Q Consensus 187 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~-----~~ 260 (287)
+-++|+.-++... .+.|...+|+ |.++..+...++... +.
T Consensus 198 f~pdGKr~~tgy~----------------------------------dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~ 243 (399)
T KOG0296|consen 198 FIPDGKRILTGYD----------------------------------DGTIIVWNPKTGQPLHKITQAEGLELPCISLNL 243 (399)
T ss_pred ccCCCceEEEEec----------------------------------CceEEEEecCCCceeEEecccccCcCCcccccc
Confidence 3456765444443 2577788876 777777764443222 22
Q ss_pred eEEEEE---eCCEEEEEecCCCeEEEE
Q 023085 261 VTSGLQ---VDNHLYVISLTSNFIGKV 284 (287)
Q Consensus 261 ~~~~~~---~~g~l~i~~~~~~~i~~~ 284 (287)
...... .++..++.+.....|..|
T Consensus 244 ~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 244 AGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred ccceeEeccCCccEEEEccccceEEEe
Confidence 222222 245566666665555544
No 164
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.79 E-value=1.5 Score=40.59 Aligned_cols=171 Identities=19% Similarity=0.183 Sum_probs=88.8
Q ss_pred CCCCc-EEEEe-cCCeEEEEE-CCceEEEEeeCCc-----cccCeEECCCCc-EEEEe-CCCceEEEc-cCC-cEEEeee
Q 023085 2 DKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFIDSQ-----TLVGLTSTKEGH-LIICD-NANGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 2 d~~G~-l~~~~-~~g~i~~~~-~~~~~~~~~~~~~-----~~~~i~~d~dg~-l~v~~-~~~gi~~~~-~~g-~~~~~~~ 69 (287)
.++|. |.+++ ..-.|++++ ++.... ...... +.+.+.+..|++ ++++. ....+..++ .+. ...+...
T Consensus 391 SPdg~~Ia~st~~~~~iy~L~~~~~vk~-~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 391 SPDGNLIAISTVSRTKIYRLQPDPNVKV-INVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred CCCCCEEEEeeccceEEEEeccCcceeE-EEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcc
Confidence 35664 44555 555777777 443322 222111 111344444553 33333 223455555 333 3333332
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccc-ccceEEEccC-CCE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSRD-EDY 147 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~ 147 (287)
......+.+..|++.++|+-+.+ ....+.|+.|+.++++.+.+...+. .....++.|. ...
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa-----------------~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAA-----------------ISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEE-----------------EeccceEEEEEcccceeecchhccCcceeeeeccccccCc
Confidence 22223457788999999984442 2245789999998777666543332 2334456643 345
Q ss_pred EEEEeCCCCEEEEEEecCCCCcce---------eEEeccCCCCCcceeeCCCCC
Q 023085 148 VVVCESWKFRCRKYWLKGERKGKL---------ETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~i~~d~~G~ 192 (287)
|.++.+ ++.++-||++..++.+. ..+. .......++.+|+.+.
T Consensus 533 lvvats-~nQv~efdi~~~~l~~ws~~nt~nlpk~~~-~l~~~~~gisfd~~n~ 584 (691)
T KOG2048|consen 533 LVVATS-NNQVFEFDIEARNLTRWSKNNTRNLPKEPK-TLIPGIPGISFDPKNS 584 (691)
T ss_pred EEEEec-CCeEEEEecchhhhhhhhhccccccccChh-hcCCCCceEEeCCCCc
Confidence 777765 57899999853322211 1111 1223356788887653
No 165
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.77 E-value=0.5 Score=42.31 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=37.7
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC-C---CCcceeeCCCCCEEE
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-G---APDNINLAPDGTFWI 195 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~---~~~~i~~d~~G~lwv 195 (287)
-+|.|+.+..+++.+..+.+..|+++.. +...+++.+... + .+...+++++|++..
T Consensus 274 g~whP~~k~~FlT~s~DgtlRiWdv~~~-k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 274 GCWHPDNKEEFLTCSYDGTLRIWDVNNT-KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cccccCcccceEEecCCCcEEEEecCCc-hhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 4688998889999998899999998753 234445543211 1 245567789998733
No 166
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.76 E-value=1.8 Score=40.64 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=103.6
Q ss_pred cccCeEECCCCcEEEEeCCCceEEEc-cCCcEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 34 TLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 34 ~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
|+.+..+.|+.++.+.....+-.|+- -+..+.+.... + +..-+.++.+.+.|..|++-++ ..
T Consensus 453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-G-H~~PVwdV~F~P~GyYFatas~---------------D~ 515 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-G-HLAPVWDVQFAPRGYYFATASH---------------DQ 515 (707)
T ss_pred ceeeeeecccccceeeccCCcceeeeecccceeEEEec-C-CCcceeeEEecCCceEEEecCC---------------Cc
Confidence 33377788888877775553333332 11122222211 1 1223456777877776665322 12
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
...||-.|-. ...+.++.......-+.|.|...++... +....+..||+..+ ...+.|.. -.+....+++.+.|
T Consensus 516 tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~~G--~~VRiF~G-H~~~V~al~~Sp~G- 589 (707)
T KOG0263|consen 516 TARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATG-SSDRTVRLWDVSTG--NSVRIFTG-HKGPVTALAFSPCG- 589 (707)
T ss_pred eeeeeecccC-CchhhhcccccccceEEECCcccccccC-CCCceEEEEEcCCC--cEEEEecC-CCCceEEEEEcCCC-
Confidence 2357766542 4444455555555557788877633333 44456777776543 23555542 11235668888888
Q ss_pred EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEECCCCccccceEEEEEe-CCE
Q 023085 193 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNH 270 (287)
Q Consensus 193 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~g~ 270 (287)
.|+++..- .+.|...|. .|+.+..+... .+.+.++.+. +|.
T Consensus 590 r~LaSg~e---------------------------------d~~I~iWDl~~~~~v~~l~~H----t~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 590 RYLASGDE---------------------------------DGLIKIWDLANGSLVKQLKGH----TGTIYSLSFSRDGN 632 (707)
T ss_pred ceEeeccc---------------------------------CCcEEEEEcCCCcchhhhhcc----cCceeEEEEecCCC
Confidence 55555441 234555553 34555544322 2346666664 677
Q ss_pred EEEEecCCCeEEEEeC
Q 023085 271 LYVISLTSNFIGKVQL 286 (287)
Q Consensus 271 l~i~~~~~~~i~~~~~ 286 (287)
+.+.+-..+.|...|+
T Consensus 633 vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDL 648 (707)
T ss_pred EEEecCCCCeEEEEEc
Confidence 7677666777776664
No 167
>PHA02713 hypothetical protein; Provisional
Probab=95.72 E-value=1.8 Score=40.43 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=50.3
Q ss_pred eEEEEE--CCceEEEEeeCCccc-cCeEECCCCcEEEEeCC-------CceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~-~~i~~d~dg~l~v~~~~-------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
.+.+|+ .+++......+.... .+.+. -++.||+.... ..++++| .+. +..+.+-. .+.... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~--~~R~~~-~~- 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI--KNRCRF-SL- 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc--chhhce-eE-
Confidence 356777 555554433322111 02222 36788887431 1377888 555 55543211 111121 22
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD 131 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 131 (287)
+.-+|.||+.... . .......+.+|||.++++..+..
T Consensus 348 ~~~~g~IYviGG~--------~----~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 348 AVIDDTIYAIGGQ--------N----GTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEECCEEEEECCc--------C----CCCCCceEEEEECCCCeEEECCC
Confidence 2336889985211 0 00112468999999888876543
No 168
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.70 E-value=0.019 Score=28.60 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=16.1
Q ss_pred cccceEEEEEe-CCEEEEEecC
Q 023085 257 LMSFVTSGLQV-DNHLYVISLT 277 (287)
Q Consensus 257 ~~~~~~~~~~~-~g~l~i~~~~ 277 (287)
..+.+.++++| +|+|||||.+
T Consensus 3 ~~n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEETS
T ss_pred CCCeEEEEEEcCCcCEEEEeCC
Confidence 34678899998 7999999863
No 169
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.65 E-value=0.26 Score=42.80 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=51.3
Q ss_pred CCC-cEEEEecCCeEEEEE-CCce-EEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~-~~~~-~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~ 76 (287)
+|| ++..|+.++.++.++ +|+. ..|.......++.+++.+||. +++.+....|..++ ++. -..+... ..
T Consensus 322 pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-----~~ 396 (519)
T KOG0293|consen 322 PDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-----EQ 396 (519)
T ss_pred cCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-----cC
Confidence 456 577788888999998 5543 233332222233899999996 44444445677776 444 1112111 12
Q ss_pred ccceEEEcCCCcEEEEc
Q 023085 77 FANDVVEASDGSLYFTV 93 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~ 93 (287)
.+..+.+..+|.+.+.+
T Consensus 397 ~its~~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVN 413 (519)
T ss_pred ceeEEEEcCCCcEEEEE
Confidence 45677888888877753
No 170
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=95.63 E-value=0.23 Score=45.71 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCc--ce--eeee--eccCCCceEEEEeCCCCeeEEeecc--ccccceEEEccCC
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPH--EY--CLDI--LEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDE 145 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~--~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 145 (287)
.+..|..|+++++|+|||+......... .. ..+. +.......++..++.+++++++... .....|++|+||+
T Consensus 434 ~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg 513 (524)
T PF05787_consen 434 GFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDG 513 (524)
T ss_pred CcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCC
Confidence 3678999999999999998544221100 00 0000 0000001155667777777776533 2345689999999
Q ss_pred CEEEEE
Q 023085 146 DYVVVC 151 (287)
Q Consensus 146 ~~l~v~ 151 (287)
++||+.
T Consensus 514 ~tlFvn 519 (524)
T PF05787_consen 514 RTLFVN 519 (524)
T ss_pred CEEEEE
Confidence 999885
No 171
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.51 E-value=1.6 Score=38.63 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=91.2
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc--------cCC-cEEEee
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS--------EDG-VENFLS 68 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~--------~~g-~~~~~~ 68 (287)
+++|.+.++. ..|.||.|- +|....+...-=.+.+.+.+..||.++++....| |+.+. +++ ..++..
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 4667655555 788898887 6655332211112222667777888777754544 33322 111 111111
Q ss_pred ecCCccccccceEEEcCCC---cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCC
Q 023085 69 YVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 69 ~~~~~~~~~~~~l~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 145 (287)
. .+ .-..+.++.++..| +||-+ ..+..+-.+|...|.+-.-..-...++.+++||-+
T Consensus 170 f-~~-HtlsITDl~ig~Gg~~~rl~Ta------------------S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae 229 (476)
T KOG0646|consen 170 F-SD-HTLSITDLQIGSGGTNARLYTA------------------SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAE 229 (476)
T ss_pred e-cc-CcceeEEEEecCCCccceEEEe------------------cCCceEEEEEeccceeeEEEecCCcceeEEEcccc
Confidence 0 01 11245666666543 33332 23345556666656543222222345788999999
Q ss_pred CEEEEEeCCCCEEEEEEecCCC--------C------cceeEEeccCC-CCCcceeeCCCCCEEEEEe
Q 023085 146 DYVVVCESWKFRCRKYWLKGER--------K------GKLETFAENLP-GAPDNINLAPDGTFWIAII 198 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~--------~------~~~~~~~~~~~-~~~~~i~~d~~G~lwv~~~ 198 (287)
+.+|+..+ .++|+...+.+-. . .+...+..... .....+++..||++.++..
T Consensus 230 ~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 230 RVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred cEEEecCC-cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 98998875 5678887764311 0 01111111111 1345677777887776664
No 172
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.49 E-value=1.1 Score=39.30 Aligned_cols=155 Identities=14% Similarity=0.028 Sum_probs=71.5
Q ss_pred CCceEEEEeCCCCeeEEeeccc-cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC--cceeeC
Q 023085 112 PHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP--DNINLA 188 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~d 188 (287)
...++|.+|..+++...+.... ....|..++++.+.+|... .+..|+++++++.+ +...+. ...... .....+
T Consensus 58 g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n 133 (386)
T PF14583_consen 58 GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLE--ERVVYE-VPDDWKGYGTWVAN 133 (386)
T ss_dssp SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT----EEEEEE---TTEEEEEEEEE-
T ss_pred CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCc--EEEEEE-CCcccccccceeeC
Confidence 3457999999999998886543 3334677788888776554 34689999986532 223332 111111 234457
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE-EECCC--Ccccc---ceE
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN-LVDPT--GQLMS---FVT 262 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-~~~~~--~~~~~---~~~ 262 (287)
++++..++....+. ..+........+..+. ..+..+|++++.++...+. +.... |.+.. .+.
T Consensus 134 ~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 134 SDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT 201 (386)
T ss_dssp TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE
T ss_pred CCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC
Confidence 78888877754211 1111111122333343 4445799999977544443 33222 11000 122
Q ss_pred --EEEEe------CCEEEEEecCCCeEE
Q 023085 263 --SGLQV------DNHLYVISLTSNFIG 282 (287)
Q Consensus 263 --~~~~~------~g~l~i~~~~~~~i~ 282 (287)
.+|.. +.|||+....+.-+.
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~ 229 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVK 229 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---E
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcce
Confidence 22221 358999888766543
No 173
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.45 E-value=1.5 Score=37.70 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=80.6
Q ss_pred ceEEEEeCCCCeeEE-eeccccccceEE-EccCCCEEEEEe---CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 114 GQLLKYDPSSNITTL-VADGFYFANGVA-LSRDEDYVVVCE---SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~~l~v~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
..+|.||.++-++-. +......|.|++ +++....-|++- ...+.|+.||..+- .....+. .-.+....++++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~-aH~~~lAalafs 182 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTIN-AHKGPLAALAFS 182 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEE-ecCCceeEEEEC
Confidence 358888876544322 222224566654 565443334433 23467888886532 1111111 111235679999
Q ss_pred CCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEE--CCCCcEEEEEECCCCccccceEEEEE
Q 023085 189 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV--AEDGTIIRNLVDPTGQLMSFVTSGLQ 266 (287)
Q Consensus 189 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~ 266 (287)
++|++-.+... .|.|.|+ -++|+.+..|.. |...-.+.++++
T Consensus 183 ~~G~llATASe----------------------------------KGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F 226 (391)
T KOG2110|consen 183 PDGTLLATASE----------------------------------KGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF 226 (391)
T ss_pred CCCCEEEEecc----------------------------------CceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence 99987666554 3566664 378888888764 444456788888
Q ss_pred e-CCEEEEEecCCCeEEEEeCC
Q 023085 267 V-DNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 267 ~-~g~l~i~~~~~~~i~~~~~~ 287 (287)
+ +.....++-+...|++|.|+
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEec
Confidence 6 56666777778899999875
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.44 E-value=0.59 Score=40.47 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=76.7
Q ss_pred cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+..|..|| +|+.......+...+ ++.+..||.+++++.. +.|.++| +.| +..-.....| ..+....+-.+
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---~k~~Raifl~~ 227 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---AKPARAIFLAS 227 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---CCcceeEEecc
Confidence 456677777 565544434455566 8889999999988755 4677888 666 3222122222 23334445556
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEE---EccCCCEEEEEeCCCCEEEEEEe
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
|.++.|..+ + ...-.+..+|+..-+.-.....+...+|+. +++|.+.+|++.-+.+.|.-|.+
T Consensus 228 g~i~tTGfs-r-------------~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 228 GKIFTTGFS-R-------------MSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred Cceeeeccc-c-------------ccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 775554322 0 011123344443111111122233445554 58999999999987778888887
Q ss_pred cC
Q 023085 164 KG 165 (287)
Q Consensus 164 ~~ 165 (287)
..
T Consensus 294 t~ 295 (472)
T KOG0303|consen 294 TN 295 (472)
T ss_pred cC
Confidence 54
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.43 E-value=1.9 Score=38.81 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=62.3
Q ss_pred cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-----e-cccccc
Q 023085 63 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----A-DGFYFA 136 (287)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~-~~~~~~ 136 (287)
.+.+.....+.....|..-+++++|.++.+ +-..|.|..|+..+.-+... + ...+..
T Consensus 305 ~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa-----------------gc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~I 367 (641)
T KOG0772|consen 305 LQVIKTKPAGGKRVPVTSCAWNRDGKLIAA-----------------GCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDI 367 (641)
T ss_pred eeEEeeccCCCcccCceeeecCCCcchhhh-----------------cccCCceeeeecCCcccccceEeeeccCCCCce
Confidence 444444333333334556678888887442 22345666666432211111 1 112345
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCC-CC-CcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLP-GA-PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~d~~G~lwv~~~~ 199 (287)
..|.|+.||+ ...+....+.|..||+...+.. ...+. .++ .. -.+.++.++..|-++...
T Consensus 368 tsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 368 TSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eEEEeccccc-hhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCccccCCCceEEEeccc
Confidence 6788999998 4455556678888887532110 11111 111 12 245778888888887765
No 176
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.42 E-value=1 Score=36.76 Aligned_cols=119 Identities=12% Similarity=0.122 Sum_probs=65.6
Q ss_pred CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEE
Q 023085 53 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTL 128 (287)
Q Consensus 53 ~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~ 128 (287)
+.|...| ++| +..+.. ...++.+.+..+|++...- -.+.|-.+|+++=. ++.
T Consensus 165 ~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilTia------------------~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILTIA------------------YGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred CceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEEEe------------------cCceeEEeccccccceee
Confidence 4555566 666 333321 2357788999999976641 12467777775322 221
Q ss_pred eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 129 VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 129 ~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+. .....+.....|+. .+||+.-....+++||...+. +...+...-.+....+.+.++|.+|.+...
T Consensus 221 ~k-~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSE 287 (334)
T KOG0278|consen 221 YK-MPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSE 287 (334)
T ss_pred cc-CccccccccccCCC-ceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCC
Confidence 11 11122333456766 489988777789999987431 111221122233456677777777665543
No 177
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=95.41 E-value=0.019 Score=28.67 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.3
Q ss_pred CCcceeeCCCCCEEEEEe
Q 023085 181 APDNINLAPDGTFWIAII 198 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~ 198 (287)
....|+.|++|+||+++.
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 356789999999999985
No 178
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=95.31 E-value=0.51 Score=41.08 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=66.8
Q ss_pred ccCeEECCCCcEEEEeCCCceE-EEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 35 LVGLTSTKEGHLIICDNANGLH-KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~-~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+.++++.+||.|..+..-..+- +.| ++| ...+... ....+.+|.++++|....|.++
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g----H~k~I~~V~fsPNGy~lATgs~---------------- 365 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG----HIKEILSVAFSPNGYHLATGSS---------------- 365 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEecc----cccceeeEeECCCceEEeecCC----------------
Confidence 3389999999998764333332 234 677 3333221 2346789999999988776332
Q ss_pred CCc--eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 112 PHG--QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 112 ~~~--~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
++ .||.+-.. ..+..++........+.|+|+...+.++.+..+.+..|..
T Consensus 366 -Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 366 -DNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -CCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence 33 45555433 3344445555566788899976667777777666666653
No 179
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.28 E-value=1.6 Score=37.14 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=27.3
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
++|+|..+.+|++.|+- .....|+++++++|++....
T Consensus 145 HiNsV~~~~~G~yLiS~-----------------R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISS-----------------RNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEe-----------------cccCEEEEEECCCCcEEEEe
Confidence 57788888888888862 22357889998888877664
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=95.25 E-value=0.92 Score=38.35 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=78.0
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEE-EEeeC-----CccccCeEECCCCcEEEEeCCCceEEEc--cCC-c-EEEee-
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFID-----SQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-V-ENFLS- 68 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~-~~~~~-----~~~~~~i~~d~dg~l~v~~~~~gi~~~~--~~g-~-~~~~~- 68 (287)
++-.+|.++ +..-|..++ +|+.+. +..-. -... ++.+.+||.-.+|...+.|.+++ +.| . .....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhhh
Confidence 455677766 556677777 665542 21111 1224 78899999755555566788887 556 2 22221
Q ss_pred --ecCCccccccceEEEcCCCc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCC
Q 023085 69 --YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 69 --~~~~~~~~~~~~l~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 145 (287)
...++ ...+..+++.+-.. ++...+. ...-+|++.+-. +.+..+........-+.+.++|
T Consensus 200 ~~~k~gq-~giisc~a~sP~~~~~~a~gsY---------------~q~~giy~~~~~-~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 200 TKGKFGQ-KGIISCFAFSPMDSKTLAVGSY---------------GQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hcccccc-cceeeeeeccCCCCcceeeecc---------------cceeeeEecCCC-CceeeecccCCCeeeEEeccCc
Confidence 11121 12344566665432 3332111 011235544422 2222222222233446788999
Q ss_pred CEEEEEeCCCCEEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~ 164 (287)
+.||........|.++|+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIR 281 (406)
T ss_pred CeecccccCCCeEEEEeeh
Confidence 9999999888999999984
No 181
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.23 E-value=0.39 Score=40.42 Aligned_cols=106 Identities=16% Similarity=0.261 Sum_probs=57.8
Q ss_pred CeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.+.+.+|+.-.+........|+- ..| +..+. +. ...++...+.++|+-.++.+ .
T Consensus 311 ~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr----GH-sSyvn~a~ft~dG~~iisaS-----------------s 368 (508)
T KOG0275|consen 311 CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR----GH-SSYVNEATFTDDGHHIISAS-----------------S 368 (508)
T ss_pred EEEEccCcchhhcccccceEEEeccccchhHHHhc----Cc-cccccceEEcCCCCeEEEec-----------------C
Confidence 56777888544443344455554 344 33332 21 24677888888998777532 3
Q ss_pred CceEEEEeCCCCeeEEeec---cccccceEEEccCCC-EEEEEeCCCCEEEEEEecC
Q 023085 113 HGQLLKYDPSSNITTLVAD---GFYFANGVALSRDED-YVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~-~l~v~~~~~~~l~~~~~~~ 165 (287)
++.|-.++.++.+...... .....+.+..-|++- .+.|++ ..+.++..++.+
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qG 424 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQG 424 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccc
Confidence 5667777766554322111 112335555555543 355555 356787777654
No 182
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.11 E-value=0.99 Score=40.05 Aligned_cols=65 Identities=22% Similarity=0.379 Sum_probs=34.5
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcce--eEEec--------------cCCCCCcceeeCCCC-CEEEEE
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAI 197 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~--~~~~~--------------~~~~~~~~i~~d~~G-~lwv~~ 197 (287)
.+..|.++.|.+.||+++...+.++.||++++...+. +.+.. ...+.|.=+.+..|| +||+++
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 3467889999999999999999999999987533222 11111 122446667778888 599888
Q ss_pred ec
Q 023085 198 IK 199 (287)
Q Consensus 198 ~~ 199 (287)
.-
T Consensus 393 SL 394 (461)
T PF05694_consen 393 SL 394 (461)
T ss_dssp --
T ss_pred ec
Confidence 53
No 183
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.99 E-value=1.7 Score=35.80 Aligned_cols=137 Identities=10% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
..-.+++|++.+.+...| .|+.........+.. +-+.--.+.+.++=+..+++.++ .+| ...+..... ..
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE-~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~----vk 96 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIE-CSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET----VK 96 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceee-eeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhh----hc
Confidence 334688999988888888 666544433332222 21111122366666666788887 777 333322110 12
Q ss_pred cceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCC
Q 023085 78 ANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 78 ~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.. -.+|.+ |-+|.+ +.+++++.+|+++..-... ..+.....+-++++-...||++.+.
T Consensus 97 ~~-a~~d~~~glIycg------------------shd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~- 156 (354)
T KOG4649|consen 97 VR-AQCDFDGGLIYCG------------------SHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITA- 156 (354)
T ss_pred cc-eEEcCCCceEEEe------------------cCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEecc-
Confidence 22 235555 456773 3457788888875432221 1111222334566633349998764
Q ss_pred CEEEEEEec
Q 023085 156 FRCRKYWLK 164 (287)
Q Consensus 156 ~~l~~~~~~ 164 (287)
+.+.+...+
T Consensus 157 G~vlavt~~ 165 (354)
T KOG4649|consen 157 GAVLAVTKN 165 (354)
T ss_pred ceEEEEccC
Confidence 566666654
No 184
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.88 E-value=2.8 Score=37.67 Aligned_cols=127 Identities=16% Similarity=0.080 Sum_probs=68.9
Q ss_pred eEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCC---ceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~---gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
+++.++ .++........+.-. ...+.+||+ |.++.... .|+.+| ..+ ...+.... +.. . .=...++
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~-~---~Ps~spd 292 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GIN-T---SPSWSPD 292 (425)
T ss_pred eEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCC-ccc-c---CccCCCC
Confidence 355555 333333333333333 567788995 55553332 488888 444 44443221 111 1 2235667
Q ss_pred Cc-E-EEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCE--EEEEE
Q 023085 87 GS-L-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFR--CRKYW 162 (287)
Q Consensus 87 g~-l-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~--l~~~~ 162 (287)
|+ | |++|.+ +.-.|++++++.+....+........--.++|||+.+.+....++. +..++
T Consensus 293 G~~ivf~Sdr~----------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~ 356 (425)
T COG0823 293 GSKIVFTSDRG----------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKND 356 (425)
T ss_pred CCEEEEEeCCC----------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEec
Confidence 75 3 334433 3347999999877776665544443345678999988777744343 44444
Q ss_pred e
Q 023085 163 L 163 (287)
Q Consensus 163 ~ 163 (287)
+
T Consensus 357 ~ 357 (425)
T COG0823 357 L 357 (425)
T ss_pred c
Confidence 4
No 185
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.88 E-value=3.3 Score=38.79 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=104.7
Q ss_pred eEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCCC-------ceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 15 WIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNAN-------GLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~-------gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
.+-.|+ .+++......+ .....++++- +|.||++.... .+.+|| .+. ++.+++-.. + ..-.+++
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~-R~~~~v~ 377 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--K-RSDFGVA 377 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--c-cccceeE
Confidence 344555 44444443322 1222144444 56888874222 378888 444 555433211 1 1112332
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC------C
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------F 156 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~------~ 156 (287)
+- +|.||+.... + ....-..+-+|||.+.+++.++.....-.+.+...-++.||+..-.. .
T Consensus 378 ~l-~g~iYavGG~--------d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 378 VL-DGKLYAVGGF--------D----GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred EE-CCEEEEEecc--------c----cccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccc
Confidence 22 6888885211 0 01122469999999999888765433333333333344588875311 3
Q ss_pred EEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceE
Q 023085 157 RCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH 236 (287)
Q Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (287)
.+.+||+..++-.......... .-.+++. -++.||+...... ......
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R--~~~g~a~-~~~~iYvvGG~~~-----------------------------~~~~~~ 492 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRR--SGFGVAV-LNGKIYVVGGFDG-----------------------------TSALSS 492 (571)
T ss_pred eEEEEcCCCCceeecCCccccc--ccceEEE-ECCEEEEECCccC-----------------------------CCccce
Confidence 5778887543222111111110 1122333 2667888775410 011235
Q ss_pred EEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEe
Q 023085 237 LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS 275 (287)
Q Consensus 237 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~ 275 (287)
+.+|||..+....... -.......+++..++.||+.+
T Consensus 493 VE~ydp~~~~W~~v~~--m~~~rs~~g~~~~~~~ly~vG 529 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAP--MTSPRSAVGVVVLGGKLYAVG 529 (571)
T ss_pred EEEEcCCCCceeEccc--CccccccccEEEECCEEEEEe
Confidence 8899998776666542 111223455566788888754
No 186
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=94.67 E-value=2.6 Score=36.28 Aligned_cols=168 Identities=14% Similarity=0.103 Sum_probs=79.8
Q ss_pred CcEEEEe--cCCeEEEEE--CCceEEEEeeCCccccCeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 5 GVIYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 5 G~l~~~~--~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
|+-||++ .++-+-.|| +|........-.....++++.+-. .|+-+...+.|-++| +.. ++.+- ..+.
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-----GHlS 236 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-----GHLS 236 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-----cccc
Confidence 4667776 455555666 555533222111112266666443 344443334566666 433 33331 1245
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEcc-CCCEEEEEeCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSR-DEDYVVVCESW 154 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~-~~~~l~v~~~~ 154 (287)
.+.++...+--++.++. ..+..+-.+|..+.. +..+.........+.+.| +.+ + ++.+.
T Consensus 237 ~V~~L~lhPTldvl~t~-----------------grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpq-v-it~S~ 297 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTG-----------------GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQ-V-ITGSH 297 (460)
T ss_pred eeEEEeccccceeEEec-----------------CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCc-e-EEecC
Confidence 67778887766777752 223344445555443 433333333334444443 343 4 44456
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...|..||+..++ ......... -....++..++-+++.+...
T Consensus 298 D~tvrlWDl~agk--t~~tlt~hk-ksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 298 DSTVRLWDLRAGK--TMITLTHHK-KSVRALCLHPKENLFASASP 339 (460)
T ss_pred CceEEEeeeccCc--eeEeeeccc-ceeeEEecCCchhhhhccCC
Confidence 6778888875321 011111000 02345666666556655544
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.56 E-value=4 Score=38.10 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCCCc-EEEEecCCeEEEEE--CCceEEEEee-CCccccCeEECCCCcEEEEe
Q 023085 2 DKNGV-IYTATRDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICD 50 (287)
Q Consensus 2 d~~G~-l~~~~~~g~i~~~~--~~~~~~~~~~-~~~~~~~i~~d~dg~l~v~~ 50 (287)
.+||. |.++ .+.+++.|+ +|........ ....+ .++...||.++.+.
T Consensus 21 kPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkrFASG 71 (1081)
T KOG1538|consen 21 KPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKRFASG 71 (1081)
T ss_pred CCCCceEEEe-cCCEEEEEeCCCcccccccccccceEE-EEEEccCCceeccC
Confidence 47784 4444 567899999 5655443333 23334 78888888877664
No 188
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.45 E-value=1 Score=38.12 Aligned_cols=134 Identities=13% Similarity=0.037 Sum_probs=75.8
Q ss_pred CceEEEEeCCCCeeEEee------ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC--CCcceeEEec---cCCCC
Q 023085 113 HGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE--RKGKLETFAE---NLPGA 181 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~--~~~~~~~~~~---~~~~~ 181 (287)
..-|..+|.-+|+.+.-. ........++|+|||+.||... +.+|.+|+...+ .-.....+.. .+.+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy--krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY--KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc--cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 345666666666654311 1234567899999999887764 678999997522 1111111111 12233
Q ss_pred CcceeeCCC--CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCcccc
Q 023085 182 PDNINLAPD--GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMS 259 (287)
Q Consensus 182 ~~~i~~d~~--G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~ 259 (287)
...+++.+- +.+-+++... .-+|++-+ ++..+..+....|
T Consensus 210 isc~a~sP~~~~~~a~gsY~q---------------------------------~~giy~~~-~~~pl~llggh~g---- 251 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQ---------------------------------RVGIYNDD-GRRPLQLLGGHGG---- 251 (406)
T ss_pred eeeeeccCCCCcceeeecccc---------------------------------eeeeEecC-CCCceeeecccCC----
Confidence 445555552 2344444331 12444432 3556666554333
Q ss_pred ceEEEE--EeCCEEEEEecCCCeEEEEeC
Q 023085 260 FVTSGL--QVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 260 ~~~~~~--~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.++-+. +++++||.|....+.|.+.|+
T Consensus 252 GvThL~~~edGn~lfsGaRk~dkIl~WDi 280 (406)
T KOG2919|consen 252 GVTHLQWCEDGNKLFSGARKDDKILCWDI 280 (406)
T ss_pred CeeeEEeccCcCeecccccCCCeEEEEee
Confidence 466544 467899999999999998875
No 189
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.14 E-value=0.51 Score=39.60 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=61.6
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE---eeccccccceEEEccCCCEEEEEeC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.++.+.+.+..+|.++. ..++.|-.+|-..-..+. +.........|.|.|-|+.|.+..
T Consensus 174 evn~l~FHPre~ILiS~-----------------srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT- 235 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISG-----------------SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT- 235 (430)
T ss_pred cccceeecchhheEEec-----------------cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-
Confidence 46778888888888852 335566666643211211 123334456788999999777765
Q ss_pred CCCEEEEEEecCCCCcceeEEeccCC-----CCCcceeeCCCCCEEEEEec
Q 023085 154 WKFRCRKYWLKGERKGKLETFAENLP-----GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~d~~G~lwv~~~~ 199 (287)
....+..||+++ .+.|....+ +....+...+.|+||++...
T Consensus 236 dHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSk 281 (430)
T KOG0640|consen 236 DHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASK 281 (430)
T ss_pred CCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEecc
Confidence 456788888753 333432211 23444666789999998865
No 190
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=94.05 E-value=1.1 Score=39.10 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCC-cEEEEecCCeEEEEECCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCcccc
Q 023085 3 KNG-VIYTATRDGWIKRLQDGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G-~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~ 76 (287)
++| +|.+|++.|...-|+.-. ++.+...-..++..+....+|.-.|+....|..++- ++- +..+. ...-.
T Consensus 106 PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~----ahh~e 181 (464)
T KOG0284|consen 106 PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQ----AHHAE 181 (464)
T ss_pred CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhh----Hhhhh
Confidence 344 466666666555554111 111111223455477888888766665455666664 332 22211 11124
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC-eeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+.++++.++...|++.+. ++.+-.+|..-. +-+.+......+..+.+.|... |.++.+..
T Consensus 182 aIRdlafSpnDskF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-LiasgskD 243 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGSKD 243 (464)
T ss_pred hhheeccCCCCceeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEccCC
Confidence 6889999998888887433 455555553212 2222333344566778888765 55554445
Q ss_pred CEEEEEEe
Q 023085 156 FRCRKYWL 163 (287)
Q Consensus 156 ~~l~~~~~ 163 (287)
+.+-.+|.
T Consensus 244 nlVKlWDp 251 (464)
T KOG0284|consen 244 NLVKLWDP 251 (464)
T ss_pred ceeEeecC
Confidence 54444554
No 191
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.89 E-value=2.7 Score=35.46 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=67.3
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcc-eeEEeccCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhcc
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS 211 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~ 211 (287)
...+-+.|.|... +.++.+..+++-.||.......+ .+.+.. . .....+.+.+.|. |.+++...
T Consensus 173 devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~-~~vrsiSfHPsGefllvgTdHp----------- 238 (430)
T KOG0640|consen 173 DEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-T-EPVRSISFHPSGEFLLVGTDHP----------- 238 (430)
T ss_pred Ccccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhc-c-ceeeeEeecCCCceEEEecCCC-----------
Confidence 3457788999886 77777888899999987543222 223321 1 1246788889886 55555431
Q ss_pred hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEEEEe
Q 023085 212 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ 285 (287)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~~~~ 285 (287)
.+-.||-+.-....-..|+.+....++.+.-. .++||++.-.-+.|-.+|
T Consensus 239 ------------------------~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 239 ------------------------TLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred ------------------------ceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 23334433332222233554444555665554 588888887777776554
No 192
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.81 E-value=3.7 Score=34.79 Aligned_cols=188 Identities=8% Similarity=0.027 Sum_probs=97.3
Q ss_pred CeEECCCCcE-EEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l-~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.+.+.+-|.+ -++-..+.++++| .+- ...+. +....-+.+++..++|+..++. ..+
T Consensus 28 ~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----saH~~pi~sl~WS~dgr~Llts-----------------S~D 86 (405)
T KOG1273|consen 28 CCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----SAHVRPITSLCWSRDGRKLLTS-----------------SRD 86 (405)
T ss_pred eEEeccCcceeeeeccCCcEEEEEccccchhhhh----hccccceeEEEecCCCCEeeee-----------------cCC
Confidence 6677888864 4444345688887 443 22221 1123456789999999988862 234
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec----cCCCCCcceeeCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE----NLPGAPDNINLAP 189 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~d~ 189 (287)
..+..+|...|....-..-.+..-+..+.|..+...++.-....-+..+.+.++ ...... ..+..+....+|+
T Consensus 87 ~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---h~~Lp~d~d~dln~sas~~~fdr 163 (405)
T KOG1273|consen 87 WSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---HSVLPKDDDGDLNSSASHGVFDR 163 (405)
T ss_pred ceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---eeeccCCCccccccccccccccC
Confidence 456666655454221111111223455667655556655443333333333221 111111 1222345557899
Q ss_pred CCC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc-EEEEEECCCCccccceEEEEEe
Q 023085 190 DGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-IIRNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 190 ~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
.|+ |+.++.+ |++..++.+.. ....+.... ...+-.+.+.
T Consensus 164 ~g~yIitGtsK-----------------------------------Gkllv~~a~t~e~vas~rits---~~~IK~I~~s 205 (405)
T KOG1273|consen 164 RGKYIITGTSK-----------------------------------GKLLVYDAETLECVASFRITS---VQAIKQIIVS 205 (405)
T ss_pred CCCEEEEecCc-----------------------------------ceEEEEecchheeeeeeeech---heeeeEEEEe
Confidence 886 5555554 68888876643 333333211 2234444443
Q ss_pred -CCEEEEEecCCCeEEEEeC
Q 023085 268 -DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 268 -~g~l~i~~~~~~~i~~~~~ 286 (287)
.|+.++.+..-..|..|++
T Consensus 206 ~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred ccCcEEEEecCCceEEEEeh
Confidence 5676666666556666654
No 193
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.78 E-value=3.8 Score=35.31 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCcEEEEecCCeEEEEE-CCceEEEEee-----------CCcc--ccCeEEC-CCCcEEEEeCCC----------ceEEE
Q 023085 4 NGVIYTATRDGWIKRLQ-DGTWVNWKFI-----------DSQT--LVGLTST-KEGHLIICDNAN----------GLHKV 58 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~~~~~~~~~-----------~~~~--~~~i~~d-~dg~l~v~~~~~----------gi~~~ 58 (287)
++.+||-|..|.|+..+ .+....+..+ .-.| +--+++. +.++||+..+.. .||.+
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 45788899999999998 4443333221 0112 1136776 467899885321 38999
Q ss_pred c-cCC--cEEEeeecCCccccccceEEEcCCC--cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecc
Q 023085 59 S-EDG--VENFLSYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 132 (287)
Q Consensus 59 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 132 (287)
| .++ +..+.-. ..+.+|.+..+. .||..+ ...+.|+.+|+.+|+.......
T Consensus 275 D~~t~krv~Ri~l~------~~~~Si~Vsqd~~P~L~~~~-----------------~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 275 DLKTHKRVARIPLE------HPIDSIAVSQDDKPLLYALS-----------------AGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEEEEE------EEESEEEEESSSS-EEEEEE-----------------TTTTEEEEEETTT--EEEEE--
T ss_pred ECCCCeEEEEEeCC------CccceEEEccCCCcEEEEEc-----------------CCCCeEEEEeCcCCcEEeehhc
Confidence 9 666 4444211 123456666554 455432 2356899999988876554433
No 194
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.69 E-value=6.3 Score=37.10 Aligned_cols=144 Identities=10% Similarity=0.013 Sum_probs=68.0
Q ss_pred CCCCcEE-EEecCCeEEEEE-CCc-eEEEEeeCCccccCeEECCCCcEEEE---eCCCceEEEc-cCCcEEEeeecCCcc
Q 023085 2 DKNGVIY-TATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC---DNANGLHKVS-EDGVENFLSYVNGSK 74 (287)
Q Consensus 2 d~~G~l~-~~~~~g~i~~~~-~~~-~~~~~~~~~~~~~~i~~d~dg~l~v~---~~~~gi~~~~-~~g~~~~~~~~~~~~ 74 (287)
|+.|.|. .|.-+|.+..|+ .+. -++.-...+.+++.+.+.|+-..|+. .....+..++ .++.+.+. .....
T Consensus 114 ~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~--~~~~H 191 (775)
T KOG0319|consen 114 DPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLH--TMILH 191 (775)
T ss_pred cCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHH--HHHhh
Confidence 4555433 333677888888 433 33322222333337777776654333 2223355555 44411110 00112
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccC-----CCEEE
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD-----EDYVV 149 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~l~ 149 (287)
...+.++++..++.-.++. .++.-+..+|..+-+.....+......+.++.++ +.+++
T Consensus 192 ~S~vtsL~~~~d~~~~ls~-----------------~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSV-----------------GRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred hhheeeeeeccCCceEEEe-----------------ccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 3467788888887655531 2334455666543433333344445566665554 33333
Q ss_pred EEeCCCCEEEEEEecC
Q 023085 150 VCESWKFRCRKYWLKG 165 (287)
Q Consensus 150 v~~~~~~~l~~~~~~~ 165 (287)
.+. ..+.+..++.++
T Consensus 255 TaG-~~g~~~~~d~es 269 (775)
T KOG0319|consen 255 TAG-GSGVVQYWDSES 269 (775)
T ss_pred Eec-CCceEEEEeccc
Confidence 332 234444555443
No 195
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.31 E-value=7.3 Score=36.67 Aligned_cols=220 Identities=11% Similarity=0.039 Sum_probs=109.1
Q ss_pred cEEEEecCCeEEEEECCceEEEEeeC---CccccCeEECCCCcEEEEeC---------CCceEEEccCC-cEEEeeecCC
Q 023085 6 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHLIICDN---------ANGLHKVSEDG-VENFLSYVNG 72 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~~~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~---------~~gi~~~~~~g-~~~~~~~~~~ 72 (287)
.+|.-. +|.+.+++.+..+...... .... ..++.+||+..+... ...|+..+..+ ..++...
T Consensus 322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--- 396 (591)
T PRK13616 322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--- 396 (591)
T ss_pred cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC---
Confidence 455443 7777777643333222221 1233 677888986333221 12466665444 4444221
Q ss_pred ccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEE
Q 023085 73 SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 73 ~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~ 151 (287)
. ....-.++++ +.||+....... .........+.++.+..+.++... .....+..+.++|||..+.+.
T Consensus 397 ~---~~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i 465 (591)
T PRK13616 397 H---SLTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI 465 (591)
T ss_pred C---CCCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence 1 1234467788 468885321000 000001123456655555444332 112246778899999987776
Q ss_pred eCCCCEEEEEEec---CCC--CcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCcccc
Q 023085 152 ESWKFRCRKYWLK---GER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS 226 (287)
Q Consensus 152 ~~~~~~l~~~~~~---~~~--~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (287)
. +++|+..-+. ++. +.............+..+.--.++.|.+++...
T Consensus 466 ~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~-------------------------- 517 (591)
T PRK13616 466 I--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP-------------------------- 517 (591)
T ss_pred E--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC--------------------------
Confidence 5 3577763332 221 111222221122223556666777787775431
Q ss_pred ccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCC
Q 023085 227 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 278 (287)
Q Consensus 227 ~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~ 278 (287)
...+++++.+|.....+. .+.....+..+......||+++..+
T Consensus 518 -------~~~v~~v~vDG~~~~~~~--~~n~~~~v~~vaa~~~~iyv~~~~g 560 (591)
T PRK13616 518 -------EHPVWYVNLDGSNSDALP--SRNLSAPVVAVAASPSTVYVTDARA 560 (591)
T ss_pred -------CCceEEEecCCccccccC--CCCccCceEEEecCCceEEEEcCCc
Confidence 235777877876654432 2222334455555556788886554
No 196
>PHA02713 hypothetical protein; Provisional
Probab=93.27 E-value=5.2 Score=37.40 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=29.4
Q ss_pred ceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCCC------CEEEEEEecC
Q 023085 114 GQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK------FRCRKYWLKG 165 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~~------~~l~~~~~~~ 165 (287)
..+.+|||.+++++.+..-. ....+++. -++ .||+..-.. ..+.+||+..
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~-~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVS-HKD-DIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEE-ECC-EEEEEeCCCCCCccceeEEEecCCC
Confidence 46999999999887665321 11223332 234 488875321 2467888754
No 197
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.20 E-value=5.8 Score=35.20 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=31.2
Q ss_pred ccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeec-----CC--------ccccccceEEEcCCCcEEEE
Q 023085 33 QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYV-----NG--------SKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 33 ~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~-----~~--------~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+. ++++.+|+. ++-+....-|...+ .+| .+.+.+.. .+ .+...+..+++.+||..+++
T Consensus 144 s~~-~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 144 SVT-SVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cce-EEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 344 788888874 44444333465555 455 21221110 01 11223557899999987775
No 198
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=93.19 E-value=7.4 Score=36.41 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=52.2
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
..+.+++.-+++ .|+| +..+..|..+..+ ..++.+.....-..|+++-+++. +++.++.
T Consensus 141 asVWAv~~l~e~-~~vT-----------------gsaDKtIklWk~~-~~l~tf~gHtD~VRgL~vl~~~~--flScsND 199 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVT-----------------GSADKTIKLWKGG-TLLKTFSGHTDCVRGLAVLDDSH--FLSCSND 199 (745)
T ss_pred hheeeeeecCCC-cEEe-----------------ccCcceeeeccCC-chhhhhccchhheeeeEEecCCC--eEeecCC
Confidence 356677666666 6665 2334455555432 22333334445567888888776 4455566
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..+++++..+.+. ..+ .+....+..-.++.+.+++..
T Consensus 200 g~Ir~w~~~ge~l~~~--~gh--tn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEM--HGH--TNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred ceEEEEeccCceeeee--ecc--ceEEEEEEecCCCCeEEEecC
Confidence 7788888765432211 111 012233443334457777765
No 199
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=93.15 E-value=4.2 Score=36.59 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=49.4
Q ss_pred CceEEEEeCCCCee-EEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 113 HGQLLKYDPSSNIT-TLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
.|.|..||...... ... ........||+|+|-++.|+++--...+|..||.........-.+... -..+++.++
T Consensus 186 ~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~ 261 (673)
T KOG4378|consen 186 KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSEC 261 (673)
T ss_pred CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCC
Confidence 45666676542221 111 122334579999998888888877788999999754322222222211 245888888
Q ss_pred CCEEEEEec
Q 023085 191 GTFWIAIIK 199 (287)
Q Consensus 191 G~lwv~~~~ 199 (287)
|.+.++...
T Consensus 262 G~~L~aG~s 270 (673)
T KOG4378|consen 262 GTYLCAGNS 270 (673)
T ss_pred ceEEEeecC
Confidence 866555544
No 200
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.14 E-value=7.6 Score=36.42 Aligned_cols=127 Identities=7% Similarity=-0.088 Sum_probs=69.9
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEe---CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE---SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
+.+..+|.++.++..-......|..+.++++|+.+|++. ..+..+...+.... ... ...+ ...--+.-++
T Consensus 215 ~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--d~~-vvfn----i~~iea~vkd 287 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--DWV-VVFN----IARIEEAVKA 287 (635)
T ss_pred EEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC--ceE-EEEc----hHHHHHhhhC
Confidence 456677877655433222334778899999999999996 23334444443211 111 1110 0100122234
Q ss_pred CC-EEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC------cEEEEEECCCCccccceEE
Q 023085 191 GT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG------TIIRNLVDPTGQLMSFVTS 263 (287)
Q Consensus 191 G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~~~~~~~~~~~~~~~ 263 (287)
|+ .|++ . +.|..+|... +.+..+.. ++ ......
T Consensus 288 GK~~~V~--g-----------------------------------n~V~VID~~t~~~~~~~v~~yIPV--GK-sPHGV~ 327 (635)
T PRK02888 288 GKFKTIG--G-----------------------------------SKVPVVDGRKAANAGSALTRYVPV--PK-NPHGVN 327 (635)
T ss_pred CCEEEEC--C-----------------------------------CEEEEEECCccccCCcceEEEEEC--CC-CccceE
Confidence 53 4442 1 3677787654 23444443 33 122233
Q ss_pred EEEeCCEEEEEecCCCeEEEEeCC
Q 023085 264 GLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 264 ~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
+.+++.++|+++..++.|+++|+.
T Consensus 328 vSPDGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 328 TSPDGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred ECCCCCEEEEeCCCCCcEEEEECh
Confidence 445678899999999999999974
No 201
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.14 E-value=3.4 Score=37.80 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=57.0
Q ss_pred CCCcEEEEecCCeEEEEE-CCceEEEEeeCCcc---ccCeEECCCCcEEEEeC--------------CCceEEEccCC--
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQT---LVGLTSTKEGHLIICDN--------------ANGLHKVSEDG-- 62 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~---~~~i~~d~dg~l~v~~~--------------~~gi~~~~~~g-- 62 (287)
++|.|++++. ..+..++ .|+.......+... .+.+...++|++++... ...|+.++++|
T Consensus 157 ~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~v 235 (477)
T PF05935_consen 157 PNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEV 235 (477)
T ss_dssp TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-E
T ss_pred CCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCE
Confidence 5788888765 6788888 67755444443322 34899999998665433 12578888777
Q ss_pred cEEEeee--c----C----------------CccccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEE
Q 023085 63 VENFLSY--V----N----------------GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119 (287)
Q Consensus 63 ~~~~~~~--~----~----------------~~~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 119 (287)
+..+... . . ...-.++|++..++ ++.|.++. .....|+.+
T Consensus 236 v~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSs-----------------R~~s~V~~I 298 (477)
T PF05935_consen 236 VWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSS-----------------RHQSAVIKI 298 (477)
T ss_dssp EEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEE-----------------TTT-EEEEE
T ss_pred EEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEc-----------------CcceEEEEE
Confidence 4443210 0 0 01113577888887 67788852 223478888
Q ss_pred eCCCCeeEEee
Q 023085 120 DPSSNITTLVA 130 (287)
Q Consensus 120 ~~~~~~~~~~~ 130 (287)
|.+++++..+.
T Consensus 299 d~~t~~i~Wil 309 (477)
T PF05935_consen 299 DYRTGKIKWIL 309 (477)
T ss_dssp E-TTS-EEEEE
T ss_pred ECCCCcEEEEe
Confidence 87777776654
No 202
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=93.13 E-value=3 Score=35.90 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=76.2
Q ss_pred CCcEEEEecCCeEEEEE--CCceEEE-EeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccc
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF 77 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~~~-~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~ 77 (287)
|+-++.++.++.|.-|| .|+.... ........ .++..|+..+++......|-..+ +.| ...+.. ....
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg-----h~~i 362 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG-----HNAI 362 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcccc-----ccce
Confidence 56788888888888888 5554332 22222334 67777877777765555566666 666 333211 1235
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---------ceEEEccCCCEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---------NGVALSRDEDYV 148 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~l 148 (287)
++.+++..||-++. +...+.++.+|-++|......+....| ...+|+.-|..|
T Consensus 363 intl~~nsD~v~~~------------------G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rl 424 (460)
T KOG0285|consen 363 INTLSVNSDGVLVS------------------GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRL 424 (460)
T ss_pred eeeeeeccCceEEE------------------cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceE
Confidence 67788887776555 234567888887766543332222222 223566556555
Q ss_pred EEEeCCCCEEEEEE
Q 023085 149 VVCESWKFRCRKYW 162 (287)
Q Consensus 149 ~v~~~~~~~l~~~~ 162 (287)
..++. +..|-.|.
T Consensus 425 it~ea-dKtIk~~k 437 (460)
T KOG0285|consen 425 ITGEA-DKTIKMYK 437 (460)
T ss_pred EeccC-CcceEEEe
Confidence 55543 34455444
No 203
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.10 E-value=0.45 Score=27.30 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=29.1
Q ss_pred EEEEEeCCCC-EEEEEEecCCCCcceeEEeccCCCCCcceeeCC
Q 023085 147 YVVVCESWKF-RCRKYWLKGERKGKLETFAENLPGAPDNINLAP 189 (287)
Q Consensus 147 ~l~v~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 189 (287)
.||+++.... +|.+.++++.. .+.+....-..|.+|++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~---~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN---RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS---EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC---eEEEEECCCCCcCEEEECC
Confidence 5999999988 89999887632 3444434445799999873
No 204
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.03 E-value=6.3 Score=35.17 Aligned_cols=150 Identities=11% Similarity=0.170 Sum_probs=83.9
Q ss_pred CeEECCCCcEEEEeCCCc-eEEEc-cCC--cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g-i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
++.+-.||+|..+-...| +-.+| .+. +..+... ..-++-+.+.++ ++++++.++
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah-----~apv~~~~f~~~d~t~l~s~sD---------------- 131 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAH-----QAPVHVTKFSPQDNTMLVSGSD---------------- 131 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhc-----cCceeEEEecccCCeEEEecCC----------------
Confidence 667778999988855555 45555 333 2332111 112233444544 456664222
Q ss_pred CCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCC-cceeeCC
Q 023085 112 PHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAP-DNINLAP 189 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~d~ 189 (287)
+..+-.+|..+..+.. +.....+.....++|....++++.+..+.|..||..... .....+ ..+.| ..+..=+
T Consensus 132 -d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~el---nhg~pVe~vl~lp 206 (487)
T KOG0310|consen 132 -DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVEL---NHGCPVESVLALP 206 (487)
T ss_pred -CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEe---cCCCceeeEEEcC
Confidence 2344455555444421 122233455567778888899999999999999864321 111111 22233 4455556
Q ss_pred CCCEEEEEeccchhHHHHhhcch
Q 023085 190 DGTFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~ 212 (287)
.|.+.+++.++..++|++..+..
T Consensus 207 sgs~iasAgGn~vkVWDl~~G~q 229 (487)
T KOG0310|consen 207 SGSLIASAGGNSVKVWDLTTGGQ 229 (487)
T ss_pred CCCEEEEcCCCeEEEEEecCCce
Confidence 77788888777777787775543
No 205
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=93.03 E-value=0.37 Score=27.24 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=27.8
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
|+++.||+++...+.|..+|....+ ....+ .....|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~--~~~~i--~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK--VIATI--PVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe--EEEEE--ECCCCCceEEeC
Confidence 5788899999989999999874321 11222 123457777764
No 206
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=92.84 E-value=0.33 Score=44.11 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=42.9
Q ss_pred ccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEe
Q 023085 75 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 75 ~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~ 152 (287)
+.+|..|++|+.|+||+.....--...... .+-..+..=++.+++++.+.... ....|.+|+||+++|||.-
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~------~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRF------RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCccc------ccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 445899999999999997433100000000 00012233345566666554322 3456899999999999875
Q ss_pred C
Q 023085 153 S 153 (287)
Q Consensus 153 ~ 153 (287)
.
T Consensus 573 Q 573 (616)
T COG3211 573 Q 573 (616)
T ss_pred c
Confidence 4
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.79 E-value=3.4 Score=38.54 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=37.6
Q ss_pred CeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 37 GLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+++-|||. |.++. +..++.+| .+| ..++... -..++.++...+|..+.+
T Consensus 17 d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH-----KDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 17 DIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH-----KDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred eeEECCCCceEEEec-CCEEEEEeCCCcccccccccc-----cceEEEEEEccCCceecc
Confidence 899999995 66654 56899999 667 5555332 136789999999998885
No 208
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=92.77 E-value=8.1 Score=35.75 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=55.5
Q ss_pred CcceeeCC-CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEEC-CCCcccc
Q 023085 182 PDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMS 259 (287)
Q Consensus 182 ~~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~-~~~~~~~ 259 (287)
.+..++|. +|+|-|++..... |........+.|+.+|++-+.+..+.. ..| -
T Consensus 273 lnqFsmdE~~G~LRvaTT~~~~-----------------------~~~~~~~s~N~lyVLD~~L~~vG~l~~la~g---E 326 (521)
T PF09826_consen 273 LNQFSMDEYDGYLRVATTSGNW-----------------------WWDSEDTSSNNLYVLDEDLKIVGSLEGLAPG---E 326 (521)
T ss_pred cccccEeccCCEEEEEEecCcc-----------------------cccCCCCceEEEEEECCCCcEeEEccccCCC---c
Confidence 45577887 7899999876210 001113445789999877777776653 122 2
Q ss_pred ceEEEEEeCCEEEEEecCC-CeEEEEeCC
Q 023085 260 FVTSGLQVDNHLYVISLTS-NFIGKVQLS 287 (287)
Q Consensus 260 ~~~~~~~~~g~l~i~~~~~-~~i~~~~~~ 287 (287)
.+.++.+-+.+.|+-|+.. +-+.++|||
T Consensus 327 ~IysvRF~Gd~~Y~VTFrqvDPLfviDLs 355 (521)
T PF09826_consen 327 RIYSVRFMGDRAYLVTFRQVDPLFVIDLS 355 (521)
T ss_pred eEEEEEEeCCeEEEEEEeecCceEEEECC
Confidence 5888888899999999986 888888886
No 209
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.59 E-value=3.7 Score=35.40 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=35.8
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+.++..||+.++...........+|+|+|.| +-..|++......|+.||+.
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhh
Confidence 4578888887655332222335689999999 55677777777889999964
No 210
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=92.52 E-value=5.3 Score=33.06 Aligned_cols=175 Identities=10% Similarity=0.042 Sum_probs=89.1
Q ss_pred CCCCcEEEEe-cCCeEEEEE--CCceEE-EEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGS 73 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~--~~~~~~-~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~ 73 (287)
.++|+|.|.. .+.....|- +|+..- +....+..+ .+.+|.+-+..++..+ ..+-..| ++| +..+ +.
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~-k~---- 92 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATW-KT---- 92 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEe-ec----
Confidence 4567666654 333332222 443322 112223334 6666666655555333 3345555 677 3332 11
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-------CCe-eEEeeccccccceEEEccCC
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALSRDE 145 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~~-~~~~~~~~~~~~~i~~~~~~ 145 (287)
...+..+-++..|++.+..... .....+.|..++.. +.+ +..+..+-..+....++|-+
T Consensus 93 -~~~Vk~~~F~~~gn~~l~~tD~------------~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 93 -NSPVKRVDFSFGGNLILASTDK------------QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred -CCeeEEEeeccCCcEEEEEehh------------hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 1234556777778765532110 01112334444432 122 33334444556667789999
Q ss_pred CEEEEEeCCCCEEEEEEecCCC-CcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 146 DYVVVCESWKFRCRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 146 ~~l~v~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|.... ..+.|-+||...+. +-+. ...-...+++|.+.++...+++...
T Consensus 160 ~~ii~Gh-e~G~is~~da~~g~~~v~s---~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 160 ETIIAGH-EDGSISIYDARTGKELVDS---DEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred CEEEEec-CCCcEEEEEcccCceeeec---hhhhccccccccccCCcceEEeccc
Confidence 8666555 45789999986431 1111 0011124778888999999998865
No 211
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.49 E-value=6.5 Score=33.96 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=32.2
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+-+.|-...+..+......|..||....+..+. .. ....++.|+..|++-.|++...
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K-Vi---~~mRTN~IswnPeafnF~~a~E 249 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQASPLKK-VI---LTMRTNTICWNPEAFNFVAANE 249 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCCccce-ee---eeccccceecCccccceeeccc
Confidence 44556676655555555667899999753321111 11 1124556666666555555544
No 212
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=3.6 Score=35.88 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
++.+.+||.+.+........+.+ .+| +....+......+..+.-...+.+..++++... ...
T Consensus 191 DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~---------------~~~ 255 (398)
T KOG0771|consen 191 DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQ---------------FPG 255 (398)
T ss_pred cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEec---------------CCC
Confidence 88999999887775555555555 666 444433222222333333322223356664322 111
Q ss_pred ceE--EEEeCCCC----eeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 114 GQL--LKYDPSSN----ITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 114 ~~v--~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+.| ++....++ +.+...........++++++|+.+-+.. ..+.+..|+..
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT-~dGsVai~~~~ 311 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT-MDGSVAIYDAK 311 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-cCCcEEEEEec
Confidence 222 22222212 2222222233456778999999666665 46778887754
No 213
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=92.38 E-value=7.8 Score=34.60 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=83.6
Q ss_pred eEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC-CCeeEEeecc
Q 023085 55 LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG 132 (287)
Q Consensus 55 i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~ 132 (287)
+++++.++ ..++.. ..+.+++|..++.|.|..+.++ +++|-.+... ++.+..+...
T Consensus 343 V~kv~~~~P~~t~~G-----H~g~V~alk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIG-----HHGEVNALKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred EEEecCCCcceeeec-----ccCceEEEEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhh
Confidence 34444455 444422 3457889999999999887544 2233333221 1212111111
Q ss_pred ccccceEEE--------ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhH
Q 023085 133 FYFANGVAL--------SRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARR 204 (287)
Q Consensus 133 ~~~~~~i~~--------~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~ 204 (287)
......+-+ .|..+.+..+....+.+..||+..+. . ...+.... .....+++.++|++-.+..-
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv-~-i~~f~kH~-~pVysvafS~~g~ylAsGs~----- 472 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV-P-IHTLMKHQ-EPVYSVAFSPNGRYLASGSL----- 472 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc-e-eEeeccCC-CceEEEEecCCCcEEEecCC-----
Confidence 111111222 23223344444456678888875431 1 11121111 12456888888854333322
Q ss_pred HHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCCeEE
Q 023085 205 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIG 282 (287)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~~i~ 282 (287)
.+.|...+ +-++..+.+...+ .+..++.. +|....+...-+.+-
T Consensus 473 -----------------------------dg~V~iws~~~~~l~~s~~~~~-----~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 473 -----------------------------DGCVHIWSTKTGKLVKSYQGTG-----GIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred -----------------------------CCeeEeccccchheeEeecCCC-----eEEEEEEcCCCCEEEEEecCCCce
Confidence 24555555 3466777776533 35666664 566666766666777
Q ss_pred EEeC
Q 023085 283 KVQL 286 (287)
Q Consensus 283 ~~~~ 286 (287)
++|+
T Consensus 519 vldl 522 (524)
T KOG0273|consen 519 VLDL 522 (524)
T ss_pred EEEe
Confidence 7765
No 214
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.16 E-value=12 Score=36.36 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=63.0
Q ss_pred CCCCcEEEEe-cCCeEEEEE-CC--ceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCCcEEEeeecCCccccc
Q 023085 2 DKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRF 77 (287)
Q Consensus 2 d~~G~l~~~~-~~g~i~~~~-~~--~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g~~~~~~~~~~~~~~~ 77 (287)
++..+|.++. .+..|..|| +. ....++.....-+ -++..|..+|+.|.+.+|+.++- +.. ..
T Consensus 259 hp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFk------leR-------Er 324 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFK------LER-------ER 324 (1202)
T ss_pred cCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEE------Ecc-------cC
Confidence 3444555554 566677777 32 3344444444555 77778888888887777766552 100 11
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee------ccccccceEEEccCCCEEEEE
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------DGFYFANGVALSRDEDYVVVC 151 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~l~v~ 151 (287)
| +.++..++-+|+ ....+..+|..+.+-..+. ..-..+..+.+.|..+.+.++
T Consensus 325 p-a~~v~~n~LfYv--------------------kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 325 P-AYAVNGNGLFYV--------------------KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred c-eEEEcCCEEEEE--------------------ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence 1 234554444555 1335666665542211111 112345678888877767776
Q ss_pred eC
Q 023085 152 ES 153 (287)
Q Consensus 152 ~~ 153 (287)
..
T Consensus 384 s~ 385 (1202)
T KOG0292|consen 384 SN 385 (1202)
T ss_pred ec
Confidence 53
No 215
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=92.01 E-value=1.3 Score=38.60 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..+.++-|.+.||++....+-|++||++++
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 356788899999999988888999998765
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.98 E-value=1.3 Score=40.28 Aligned_cols=139 Identities=9% Similarity=0.106 Sum_probs=71.9
Q ss_pred CCcEEEEecCCeEEEEE--CCceE-EE---EeeC--------CccccCeEECCCC-cEEEEeCCCceEEEc-cCCcEEEe
Q 023085 4 NGVIYTATRDGWIKRLQ--DGTWV-NW---KFID--------SQTLVGLTSTKEG-HLIICDNANGLHKVS-EDGVENFL 67 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~~~~-~~---~~~~--------~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~~g~~~~~ 67 (287)
.|-|.+|+.+|.|-.|+ ..+.. .. .... ..+. ++.+..+| .+-|++..+.++.+| +.....+.
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 45666777778787787 22211 11 1111 1133 67777778 788888766799998 55411111
Q ss_pred e-ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCC
Q 023085 68 S-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED 146 (287)
Q Consensus 68 ~-~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 146 (287)
. .....+...+..+-.+.+..++-+| ..-+-.||+.+|+.-....+....|.+|+-|++.
T Consensus 266 kdh~~e~pi~~l~~~~~~~q~~v~S~D-------------------k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 266 KDHGYELPIKKLDWQDTDQQNKVVSMD-------------------KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG 326 (703)
T ss_pred cccCCccceeeecccccCCCceEEecc-------------------hHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence 1 1111222122221112222333322 1123345666666544444455578889888888
Q ss_pred EEEEEeCCCCEEEEEEe
Q 023085 147 YVVVCESWKFRCRKYWL 163 (287)
Q Consensus 147 ~l~v~~~~~~~l~~~~~ 163 (287)
.++++.. +..+..|-+
T Consensus 327 m~f~Ane-~~~m~~yyi 342 (703)
T KOG2321|consen 327 MFFTANE-SSKMHTYYI 342 (703)
T ss_pred eEEEecC-CCcceeEEc
Confidence 6666664 455666655
No 217
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=91.94 E-value=3.5 Score=35.50 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=48.6
Q ss_pred cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCc--eEEEc-cCC--cEEEeeecCCccccccceEEEc
Q 023085 12 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG--LHKVS-EDG--VENFLSYVNGSKLRFANDVVEA 84 (287)
Q Consensus 12 ~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g--i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d 84 (287)
..|.|..|| +-+.......-..+...+++.++|.+.++...+| |.++. ++| +.++.. |.....+..++++
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEEC
Confidence 347777787 2222222222223343799999999988866666 44455 777 455432 3335678899999
Q ss_pred CCCcEEEE
Q 023085 85 SDGSLYFT 92 (287)
Q Consensus 85 ~~g~l~v~ 92 (287)
+++.+..+
T Consensus 228 ~ds~~L~~ 235 (391)
T KOG2110|consen 228 PDSQFLAA 235 (391)
T ss_pred CCCCeEEE
Confidence 99986654
No 218
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=91.79 E-value=0.68 Score=37.43 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCCCCcEEEEecCCeEEEEE---CCce-------EEEEeeC-CccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEE-
Q 023085 1 MDKNGVIYTATRDGWIKRLQ---DGTW-------VNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF- 66 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~---~~~~-------~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~- 66 (287)
+|+.|.||..+.+|.|+|.. ++.. +.+.... +... .+..+++|-||+.+....+++.. +++ -..+
T Consensus 88 ~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~ 166 (229)
T PF14517_consen 88 FDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWL 166 (229)
T ss_dssp E-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEEEETTE-EEEE---SSTT--HH
T ss_pred ecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEEEcCCCceEEeCCCCCCCCccc
Confidence 47889999988999998876 2221 1111111 1223 67789999999998543366663 332 1111
Q ss_pred --eeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC
Q 023085 67 --LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 123 (287)
Q Consensus 67 --~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 123 (287)
.....+........|...++|+||..+ ..+.|||..+.+
T Consensus 167 ~~s~~v~~~gw~~~~~i~~~~~g~L~~V~------------------~~G~lyr~~~p~ 207 (229)
T PF14517_consen 167 SGSGLVGGGGWDSFHFIFFSPDGNLWAVK------------------SNGKLYRGRPPQ 207 (229)
T ss_dssp HH-EEEESSSGGGEEEEEE-TTS-EEEE-------------------ETTEEEEES---
T ss_pred cccceeccCCcccceEEeeCCCCcEEEEe------------------cCCEEeccCCcc
Confidence 111111122235567788888988852 346788776543
No 219
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.59 E-value=9.3 Score=33.83 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=75.0
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc--cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
++..++.|||.|+.+-...|++++- ..+ ...+. + .-..+..+.+..+|...++ +
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp----g-ht~~vk~i~FsENGY~Lat-----------------~ 407 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP----G-HTGPVKAISFSENGYWLAT-----------------A 407 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC----C-CCCceeEEEeccCceEEEE-----------------E
Confidence 3367889999998886566766654 333 33321 2 2235678889888864443 1
Q ss_pred CCCceEEEEeCCCCe-eEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeC
Q 023085 111 KPHGQLLKYDPSSNI-TTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLA 188 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~-~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d 188 (287)
..++.|..||.+.-+ +..+. ......+.+.|+.-|.+|-++. ..-.|+.+............+. ...|..+++.+.
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg 485 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFG 485 (506)
T ss_pred ecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEecccccceeeehhh-hcccccceeeec
Confidence 234558888875332 22222 2233467888998898777762 2234555553222222222222 222345666665
Q ss_pred CCCCEEEEEe
Q 023085 189 PDGTFWIAII 198 (287)
Q Consensus 189 ~~G~lwv~~~ 198 (287)
... -++++.
T Consensus 486 ~~a-q~l~s~ 494 (506)
T KOG0289|consen 486 EHA-QYLAST 494 (506)
T ss_pred ccc-eEEeec
Confidence 443 344443
No 220
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.56 E-value=7.8 Score=32.88 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=27.0
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..+..+-||+++|.+ .+||++...+....|+.+
T Consensus 20 p~L~N~WGia~~p~~-~~WVadngT~~~TlYdg~ 52 (336)
T TIGR03118 20 PGLRNAWGLSYRPGG-PFWVANTGTGTATLYVGN 52 (336)
T ss_pred ccccccceeEecCCC-CEEEecCCcceEEeecCC
Confidence 345678899999977 499999888888888875
No 221
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=91.38 E-value=7.3 Score=32.19 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=59.9
Q ss_pred cEEEEecCCeEEEEEC--CceEEEEeeCCccccCeEECCCCcEEEEeCCCc-eEEEc-cC-C-cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQD--GTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-ED-G-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~-g-~~~~~~~~~~~~~~~~~ 79 (287)
.+.++..+..|.-++. -+.....+..-..+ .+...-++.+++.+.+.| |-++. +. . +..+... .....
T Consensus 120 ~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH-----~snCi 193 (313)
T KOG1407|consen 120 YIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAH-----PSNCI 193 (313)
T ss_pred EEEEecCcccEEEEEecccceeehhcccceee-eeeecCCCCEEEEecCCceEEEEeccccccccccccC-----CcceE
Confidence 4555555556666662 11111111111223 556667788888886644 33333 22 2 3332211 23456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc-ceEEEccCCCEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVV 149 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l~ 149 (287)
+|.++++|+-+.+ +..+..+-.+|++.---.+....+.+| ..+.|+.+|++|-
T Consensus 194 cI~f~p~GryfA~-----------------GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 194 CIEFDPDGRYFAT-----------------GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEECCCCceEee-----------------ccccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence 7899999996664 222333444554322222222233344 5677888998443
No 222
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.31 E-value=10 Score=33.77 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=93.4
Q ss_pred CeEECCCCcEE-EE-eCCC----ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEE-EcCCCCCCCcceeeee
Q 023085 37 GLTSTKEGHLI-IC-DNAN----GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDI 107 (287)
Q Consensus 37 ~i~~d~dg~l~-v~-~~~~----gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v-~~~~~~~~~~~~~~~~ 107 (287)
...+.+||+++ ++ +.++ .+..+| ++| ...- ... ......+...++++.++ +.... .....
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~---~~~~~~~~W~~d~~~~~y~~~~~-~~~~~----- 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE---NPKFSSVSWSDDGKGFFYTRFDE-DQRTS----- 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE---EEESEEEEECTTSSEEEEEECST-TTSS------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc---ccccceEEEeCCCCEEEEEEeCc-ccccc-----
Confidence 35677899743 33 2221 277777 677 2221 100 11222377788876444 32110 00000
Q ss_pred eccCCCceEEEEeCCCCeeE--Eeecccc--c-cceEEEccCCCEEEEEeCCC---CEEEEEEecCC--CCcceeEEecc
Q 023085 108 LEGKPHGQLLKYDPSSNITT--LVADGFY--F-ANGVALSRDEDYVVVCESWK---FRCRKYWLKGE--RKGKLETFAEN 177 (287)
Q Consensus 108 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~--~-~~~i~~~~~~~~l~v~~~~~---~~l~~~~~~~~--~~~~~~~~~~~ 177 (287)
.......|+++...+..-. .+..... . ..++..++|++.+++..... ..++.++.... .......+...
T Consensus 197 -~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 -DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred -cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 0001346888876554322 2222211 2 33667889999888765433 35777776542 12233444322
Q ss_pred CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc----EEEEE-EC
Q 023085 178 LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT----IIRNL-VD 252 (287)
Q Consensus 178 ~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~----~~~~~-~~ 252 (287)
..+ ....+....+.+|+.+.. ..+.+.|++++.+.. ....+ ..
T Consensus 276 ~~~-~~~~v~~~~~~~yi~Tn~-------------------------------~a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 276 EDG-VEYYVDHHGDRLYILTND-------------------------------DAPNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp SSS--EEEEEEETTEEEEEE-T-------------------------------T-TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCc-eEEEEEccCCEEEEeeCC-------------------------------CCCCcEEEEecccccccccceeEEcCC
Confidence 221 111222235678888875 334578888865422 22233 22
Q ss_pred CCCccccceEEEEEeCCEEEEEecCCC--eEEEEeC
Q 023085 253 PTGQLMSFVTSGLQVDNHLYVISLTSN--FIGKVQL 286 (287)
Q Consensus 253 ~~~~~~~~~~~~~~~~g~l~i~~~~~~--~i~~~~~ 286 (287)
.++ ..+..+...+++|.+....+. +|.++++
T Consensus 324 ~~~---~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 324 DED---VSLEDVSLFKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp SSS---EEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred CCc---eeEEEEEEECCEEEEEEEECCccEEEEEEC
Confidence 222 134555555677766665433 5555554
No 223
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.25 E-value=11 Score=33.83 Aligned_cols=196 Identities=13% Similarity=0.147 Sum_probs=83.3
Q ss_pred cEEEEe-CCCceEEEc-cCC--cEEEeeecCC------ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 45 HLIICD-NANGLHKVS-EDG--VENFLSYVNG------SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 45 ~l~v~~-~~~gi~~~~-~~g--~~~~~~~~~~------~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.||+-. ..+.|+++| .+. .-.+...... .....|..+.+-++|.++|+..+. ..+.+.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd-----------~~G~g~G 157 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGD-----------ADGNGPG 157 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEE-----------TTS-S--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccC-----------CCCCCCC
Confidence 355553 235799999 433 2222222111 123567788888899999974331 1234557
Q ss_pred eEEEEeCCCCeeEEeec----cccccceEEEccCCCEEEEEeC-------------------CCCEEEEEEecCCCCcce
Q 023085 115 QLLKYDPSSNITTLVAD----GFYFANGVALSRDEDYVVVCES-------------------WKFRCRKYWLKGERKGKL 171 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~l~v~~~-------------------~~~~l~~~~~~~~~~~~~ 171 (287)
+++.+|.++-++.-.-. ...+.+.+.+.|..+.|.-++. .+++|..||....+. .
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~--~ 235 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL--L 235 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE--E
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE--e
Confidence 88888876544433211 1233455666676664444433 245788888754321 1
Q ss_pred eEEeccCC-CCCcceee--CCCC-CEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEEC--CCCc
Q 023085 172 ETFAENLP-GAPDNINL--APDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA--EDGT 245 (287)
Q Consensus 172 ~~~~~~~~-~~~~~i~~--d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~g~ 245 (287)
+.+.-... ..|-.+.+ |++- .=|+++.- .+.|+++- .+|.
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL----------------------------------ss~i~~~~k~~~g~ 281 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL----------------------------------SSSIWRFYKDDDGE 281 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE------------------------------------EEEEEEEE-ETTE
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEec----------------------------------cceEEEEEEcCCCC
Confidence 11110011 12333333 4433 35555543 23555553 2343
Q ss_pred E--EEEEECCCC----cc-----------ccceEEEEE--eCCEEEEEecCCCeEEEEeCC
Q 023085 246 I--IRNLVDPTG----QL-----------MSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 246 ~--~~~~~~~~~----~~-----------~~~~~~~~~--~~g~l~i~~~~~~~i~~~~~~ 287 (287)
. ..+++.+.. -. ...++.+.. +|..||+.+...+-|.+||+|
T Consensus 282 W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 282 WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 2 222333221 11 134566655 578999999999999999986
No 224
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=91.03 E-value=7.1 Score=31.68 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=62.4
Q ss_pred CeEECCCCcEEEEeCCCceEEEc--cCCcEEEee---ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLS---YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~--~~g~~~~~~---~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.|+..|+|+||+.. ..++++.. .++...... .........-..|.+++.|.||...
T Consensus 38 ~i~~~P~g~lY~I~-~~~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~------------------ 98 (229)
T PF14517_consen 38 DIAAGPNGRLYAIR-NDGLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVT------------------ 98 (229)
T ss_dssp EEEE-TTS-EEEEE-TTEEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEE------------------
T ss_pred eEEEcCCceEEEEE-CCceEEecCCccCcccccccCcccccCcccceeEEEecCCccEEEec------------------
Confidence 57788999999987 44788883 222111100 0000102244579999999999853
Q ss_pred CCceEEEEeCCCC-eeE-------Ee-eccccccceEEEccCCCEEEEEeCCCCEEEEEEe-cCC--CCcceeEEec-cC
Q 023085 112 PHGQLLKYDPSSN-ITT-------LV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL-KGE--RKGKLETFAE-NL 178 (287)
Q Consensus 112 ~~~~v~~~~~~~~-~~~-------~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~-~~~--~~~~~~~~~~-~~ 178 (287)
..+.|+|..+.+. ... .+ ...-.....+-++++|- ||..+.. +++++... +.. .-......+. ..
T Consensus 99 ~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~d-g~~~~~~~p~~~~~~W~~~s~~v~~~g 176 (229)
T PF14517_consen 99 PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITPD-GRLYRRYRPDGGSDRWLSGSGLVGGGG 176 (229)
T ss_dssp TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEETT-E-EEEE---SSTT--HHHH-EEEESSS
T ss_pred cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcCC-CceEEeCCCCCCCCccccccceeccCC
Confidence 3467777754321 111 11 11122334566677774 8988854 46777742 221 1111111111 10
Q ss_pred CCCCcceeeCCCCCEEEEE
Q 023085 179 PGAPDNINLAPDGTFWIAI 197 (287)
Q Consensus 179 ~~~~~~i~~d~~G~lwv~~ 197 (287)
=.....|...++|+||..-
T Consensus 177 w~~~~~i~~~~~g~L~~V~ 195 (229)
T PF14517_consen 177 WDSFHFIFFSPDGNLWAVK 195 (229)
T ss_dssp GGGEEEEEE-TTS-EEEE-
T ss_pred cccceEEeeCCCCcEEEEe
Confidence 0124557778889999883
No 225
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.00 E-value=6.1 Score=38.59 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=74.3
Q ss_pred CCCC-cEEEEecCCeEEEEE-CC--------------ceEEE------EeeCCccccCeEECCCCcEEEEeCC-CceEEE
Q 023085 2 DKNG-VIYTATRDGWIKRLQ-DG--------------TWVNW------KFIDSQTLVGLTSTKEGHLIICDNA-NGLHKV 58 (287)
Q Consensus 2 d~~G-~l~~~~~~g~i~~~~-~~--------------~~~~~------~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~ 58 (287)
.+|| .|++|+++.-|..|. .. ..+.| ........ ++..+|++.+.+.-.. ..|..+
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEecccceEEEE
Confidence 4567 688888776666665 21 01112 11223344 7788899988777433 567888
Q ss_pred c-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCC-CeeEEeecccc
Q 023085 59 S-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFY 134 (287)
Q Consensus 59 ~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ 134 (287)
+ .+. .+.+.. ....+-++.+|+-|..+.+.++ +..|-.+...+ +-.+.+..++.
T Consensus 157 n~~tF~~~~vl~~-----H~s~VKGvs~DP~Gky~ASqsd-----------------Drtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 157 NAKTFELLKVLRG-----HQSLVKGVSWDPIGKYFASQSD-----------------DRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ccccceeeeeeec-----ccccccceEECCccCeeeeecC-----------------CceEEEEEcccceeeEeeccchh
Confidence 7 444 333321 2346789999999997775322 23333333222 22333333332
Q ss_pred ------ccceEEEccCCCEEEEEeCCCC
Q 023085 135 ------FANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 135 ------~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
+..-+.++|||++|-.....++
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccC
Confidence 2234678999998777766443
No 226
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.96 E-value=11 Score=33.65 Aligned_cols=128 Identities=14% Similarity=0.040 Sum_probs=73.4
Q ss_pred EEEEecCCeEEEEECCc--eEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEE
Q 023085 7 IYTATRDGWIKRLQDGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVV 82 (287)
Q Consensus 7 l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~ 82 (287)
+..|+.+|.|.-|+... ........+.|+..+..-+.|.+.++..+..+-++| .+| ...... ....-.++++.
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~---~~H~KtVTcL~ 245 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSM---FNHNKTVTCLR 245 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhh---hcccceEEEEE
Confidence 44555888888888221 222233345666577788999888876555677777 445 222111 11234678888
Q ss_pred EcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 83 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 83 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
...+++-.++. .-++.|-.|+..+-++..-..-....-.++++|+++.+++.-++
T Consensus 246 l~s~~~rLlS~-----------------sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 246 LASDSTRLLSG-----------------SLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred eecCCceEeec-----------------ccccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 88888766642 23455666664323332211111122456788999988888554
No 227
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.92 E-value=9.2 Score=33.59 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=58.1
Q ss_pred CeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
++.+..+| +|..+....-+-.+| ++. ..++... .-..-...+.+.+.+++....+ +..
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-g~k~asDwtrvvfSpd~~YvaA-----------------GS~ 407 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-GFKCASDWTRVVFSPDGSYVAA-----------------GSA 407 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-ccccccccceeEECCCCceeee-----------------ccC
Confidence 66677778 455554445567777 554 3333221 1111223567888888886554 345
Q ss_pred CceEEEEeCCCCeeEEeecccc---ccceEEEccCCCEEEEEe
Q 023085 113 HGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCE 152 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~l~v~~ 152 (287)
++.|+.++..++++........ ....++|+|-|..|.-++
T Consensus 408 dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 408 DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 6789999988888877654322 234556777666555443
No 228
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.61 E-value=11 Score=32.89 Aligned_cols=83 Identities=12% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCceEEEEeCCCCeeEEeeccccccc-eEEEccCCCEEEEEeCC----CCEEEEEEec-CCCCcceeEEeccCCCCCc-c
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDYVVVCESW----KFRCRKYWLK-GERKGKLETFAENLPGAPD-N 184 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~l~v~~~~----~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 184 (287)
+...|+.++..++..+.+..+.-... -+.++++++.+|+.... ...|++.+++ +. ..+.+. ...... .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT--~~~~~~~~ 332 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLT--CEDGDHYS 332 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESS--TTSSTTEE
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEecc--CCCCCceE
Confidence 34689999988777665554433333 35688998889988764 3478888876 32 222222 222233 6
Q ss_pred eeeCCCCCEEEEEec
Q 023085 185 INLAPDGTFWIAIIK 199 (287)
Q Consensus 185 i~~d~~G~lwv~~~~ 199 (287)
+.+.++|+.++-+..
T Consensus 333 ~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 333 ASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEE-TTSSEEEEEEE
T ss_pred EEECCCCCEEEEEEc
Confidence 888999988877755
No 229
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.52 E-value=16 Score=34.60 Aligned_cols=109 Identities=8% Similarity=0.018 Sum_probs=65.7
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.++++++|...++.....|..++ .++ .. +... .......+.++++.+++...++- ....
T Consensus 24 ~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~-l~s~-~~ed~d~ita~~l~~d~~~L~~a-----------------~rs~ 84 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTACGDRVIIIDVATGSIA-LPSG-SNEDEDEITALALTPDEEVLVTA-----------------SRSQ 84 (775)
T ss_pred ceeECCCCCEEEEecCceEEEEEccCCcee-cccC-CccchhhhheeeecCCccEEEEe-----------------eccc
Confidence 36789999887777667788888 777 43 2211 12233467888999988765531 1223
Q ss_pred eEEEEeCCCCeeEEeec--cccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 115 QLLKYDPSSNITTLVAD--GFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
-+-.|..+++++..... .-...-.++++|-+. +..+....+++.++|+++
T Consensus 85 llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~-LlAtggaD~~v~VWdi~~ 136 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGT-LLATGGADGRVKVWDIKN 136 (775)
T ss_pred eEEEEEcccchHhHhHhhccCCCeEEEEEcCCCc-eEEeccccceEEEEEeeC
Confidence 34444555565433222 223335667888874 555544567888888865
No 230
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.20 E-value=17 Score=34.56 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=83.7
Q ss_pred cEEEEecCCeEEEEE--CC-ceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc------cCC-cEEEeeecCC--
Q 023085 6 VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS------EDG-VENFLSYVNG-- 72 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~-~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~------~~g-~~~~~~~~~~-- 72 (287)
.+.+|+.+|.+..|+ .. -.+.+....+..+ .++..|||.-.++..+ +.+-.++ ..| ..........
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 456677788888777 22 2233333344556 8888999976665434 3222221 123 2221110000
Q ss_pred -ccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc--eEEEEeCCCCeeEEeecccccc-ceEEEccCCCEE
Q 023085 73 -SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG--QLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYV 148 (287)
Q Consensus 73 -~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~l 148 (287)
.-...+.++.+.+||.+.... --++ .||.+|. -++..-.-+-..| -.+-++||.+ +
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVs-----------------LLdnTVkVyflDt--lKFflsLYGHkLPV~smDIS~DSk-l 564 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVS-----------------LLDNTVKVYFLDT--LKFFLSLYGHKLPVLSMDISPDSK-L 564 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEE-----------------eccCeEEEEEecc--eeeeeeecccccceeEEeccCCcC-e
Confidence 112356678899999876631 1123 3555543 3332211122223 3455889998 6
Q ss_pred EEEeCCCCEEEEEEecCCCCcce--eEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 149 VVCESWKFRCRKYWLKGERKGKL--ETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
.++.+....+-.|-++ ++.+ ..++.. . ....+.+-|+-+++.++..
T Consensus 565 ivTgSADKnVKiWGLd---FGDCHKS~fAHd-D-Svm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLD---FGDCHKSFFAHD-D-SVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred EEeccCCCceEEeccc---cchhhhhhhccc-C-ceeEEEEcccceeEEEecC
Confidence 6666555555555443 2322 122211 1 1334556676667777765
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=89.67 E-value=17 Score=33.57 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=62.5
Q ss_pred CeEEC-CCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTST-KEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d-~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+|.++ +.-.||++..+..|||++ +.| +.++.... ..++.+.+..-..|..+ ++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~~hgLla~-----------------Gt~ 195 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINEEHGLLAC-----------------GTE 195 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecCccceEEe-----------------ccc
Confidence 34444 345788887677899999 778 66654321 23455555554444443 445
Q ss_pred CceEEEEeCCCCee-EEeec-----------cccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNIT-TLVAD-----------GFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~~~-----------~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.|.|-.|||.+.+. ..+.. ....+..+.|+.+|-.+-|.. ..+.++.||+.
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-s~G~v~iyDLR 258 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-STGSVLIYDLR 258 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec-cCCcEEEEEcc
Confidence 67788888875542 22211 112355677877665555554 45779999974
No 232
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=89.66 E-value=12 Score=31.90 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=27.6
Q ss_pred CceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 113 HGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
...|..|+.+ |++ ..+.......+-.+++|+|+.+-++.... -+.+|.
T Consensus 208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE 256 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWE 256 (420)
T ss_pred CCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEE
Confidence 3457777777 553 33433333344567899999776665443 244433
No 233
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=89.60 E-value=2.8 Score=35.93 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=60.8
Q ss_pred eEECCCCcEEEEeCC-CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 38 LTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 38 i~~d~dg~l~v~~~~-~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
+.++-+.++.+.... ..+.+.| .+| +.++.... ..+-.+.+. +| +.++.+- ...
T Consensus 241 LCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHc-----eaVLhlrf~-ng-~mvtcSk---------------Drs 298 (499)
T KOG0281|consen 241 LCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC-----EAVLHLRFS-NG-YMVTCSK---------------DRS 298 (499)
T ss_pred EeeeccceEEEecCCCceEEEEeccCCchhhHHhhhc-----ceeEEEEEe-CC-EEEEecC---------------Cce
Confidence 455667777776433 4566677 666 44432211 123334333 23 2333211 123
Q ss_pred ceEEEEeCCCCe-eEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-C
Q 023085 114 GQLLKYDPSSNI-TTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-D 190 (287)
Q Consensus 114 ~~v~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~ 190 (287)
..||+++..+.. ...+ .......|-+-|+ .+ ..|+.++...|..++.++. .++....+.-.||++-. .
T Consensus 299 iaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st~------efvRtl~gHkRGIAClQYr 369 (499)
T KOG0281|consen 299 IAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTSTC------EFVRTLNGHKRGIACLQYR 369 (499)
T ss_pred eEEEeccCchHHHHHHHHhhhhhheeeeccc--cc-eEEEecCCceEEEEeccce------eeehhhhcccccceehhcc
Confidence 356666533221 1111 1223445555555 44 4444455566777775432 22334555667777754 4
Q ss_pred CCEEEEE
Q 023085 191 GTFWIAI 197 (287)
Q Consensus 191 G~lwv~~ 197 (287)
|++-|+.
T Consensus 370 ~rlvVSG 376 (499)
T KOG0281|consen 370 DRLVVSG 376 (499)
T ss_pred CeEEEec
Confidence 5555554
No 234
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=89.49 E-value=11 Score=31.20 Aligned_cols=101 Identities=13% Similarity=0.037 Sum_probs=58.7
Q ss_pred ccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~ 155 (287)
.+..++.++. ..++++- .+...+.++|..+++............-++++|+|+++.+.+ ..
T Consensus 66 svdql~w~~~~~d~~ata-----------------s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~-kd 127 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATA-----------------SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN-KD 127 (313)
T ss_pred chhhheeCCCCCcceEEe-----------------cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-Cc
Confidence 5667778864 4566642 234467777766555433322223345578899999777776 45
Q ss_pred CEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 156 FRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|..+|....+......+. -..+.++...++++++.+.+
T Consensus 128 D~it~id~r~~~~~~~~~~~----~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 128 DRITFIDARTYKIVNEEQFK----FEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred ccEEEEEecccceeehhccc----ceeeeeeecCCCCEEEEecC
Confidence 67888886532222111111 12345666667778888776
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=89.04 E-value=13 Score=32.33 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..++.|...+||..|++-+. .+..+..+|++++....+. .......-+.++||+..++.+...
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 45677888889999996432 3446777888877655543 333334456799999977777643
Q ss_pred CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 155 KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
.+++......+.. .+.+. ...++..+-+-++.|.
T Consensus 260 --avfrlw~e~q~wt-~erw~-lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 260 --AVFRLWQENQSWT-KERWI-LGSGRVQTACWSPCGS 293 (445)
T ss_pred --ceeeeehhcccce-eccee-ccCCceeeeeecCCCC
Confidence 3444442222211 12222 1233455556677775
No 236
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.02 E-value=23 Score=34.19 Aligned_cols=138 Identities=13% Similarity=0.154 Sum_probs=74.7
Q ss_pred CeEECCCCcE-EEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~l-~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
+++++.=|+. +++...+-|-+++ ..| ...+... ...-..+.++++|.-+++.++. ..
T Consensus 453 av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~--~ah~~~V~gla~D~~n~~~vsa-----------------~~ 513 (910)
T KOG1539|consen 453 AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS--PAHKGEVTGLAVDGTNRLLVSA-----------------GA 513 (910)
T ss_pred EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC--ccccCceeEEEecCCCceEEEc-----------------cC
Confidence 6777888875 4554444588888 777 3333211 1123467899999989888862 22
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 192 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~ 192 (287)
.|-+-.++-+.+.+..-......+.++...-... +++.....-.|..+|....+. .+.|. .-.+..+.+++.+||+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~FS~Dgr 589 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTFSPDGR 589 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEeCCCCc
Confidence 4555566655333222112222334444443333 444444456788888643221 12222 1223577899999996
Q ss_pred EEEEE
Q 023085 193 FWIAI 197 (287)
Q Consensus 193 lwv~~ 197 (287)
.-++.
T Consensus 590 Wlisa 594 (910)
T KOG1539|consen 590 WLISA 594 (910)
T ss_pred EEEEe
Confidence 44443
No 237
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=88.93 E-value=4.9 Score=37.32 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=30.2
Q ss_pred eEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 115 QLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 115 ~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.|-.+|..++.. ..+.......-+++|+|+|+.+-.. ...++|.+|...
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtV-cKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATV-CKDGTLRVYEPR 750 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeee-ecCceEEEeCCC
Confidence 444455443332 2233344556789999999854433 456889998864
No 238
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.93 E-value=14 Score=35.09 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=80.1
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcE-EEEeCCCceEEE-ccCC--cEEEee--ec--CCccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKV-SEDG--VENFLS--YV--NGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l-~v~~~~~gi~~~-~~~g--~~~~~~--~~--~~~~~ 75 (287)
.+.-|+-+|.+..|+ +.+...|........ ++.+.|||.. .|++. .|..++ +..+ +..-.. .. .....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 344455788888888 667777766665555 8899999975 55564 465444 4444 221111 11 11112
Q ss_pred cccceEEEcCC--CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---ceEEEccCCCEEEE
Q 023085 76 RFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVV 150 (287)
Q Consensus 76 ~~~~~l~~d~~--g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~l~v 150 (287)
..++++.+.+. ..+.||. .+..|-.||..+..+.....++... ....|+.||+.+..
T Consensus 502 ~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred ceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 25777777643 2477752 3456777776434433333333222 33457889997777
Q ss_pred EeCCCCEEEEEEec
Q 023085 151 CESWKFRCRKYWLK 164 (287)
Q Consensus 151 ~~~~~~~l~~~~~~ 164 (287)
+. ....++.|..+
T Consensus 564 ~s-eDs~VYiW~~~ 576 (712)
T KOG0283|consen 564 AS-EDSWVYIWKND 576 (712)
T ss_pred ee-cCceEEEEeCC
Confidence 66 56788888864
No 239
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.61 E-value=4.6 Score=35.95 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 112 PHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..|.|-.|.|.+.+. ..+.......++|+++++|+++..+. ....+-.||+..- .....+.+ +-...++++...
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG-~Dr~~kIWDlR~~--~ql~t~~t--p~~a~~ls~Sqk 345 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTG-LDRKVKIWDLRNF--YQLHTYRT--PHPASNLSLSQK 345 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecc-cccceeEeeeccc--cccceeec--CCCccccccccc
Confidence 344555555543331 11233345568899999998655544 3456777887431 22222221 222455666666
Q ss_pred CCEEEEE
Q 023085 191 GTFWIAI 197 (287)
Q Consensus 191 G~lwv~~ 197 (287)
|.|-++.
T Consensus 346 glLA~~~ 352 (545)
T KOG1272|consen 346 GLLALSY 352 (545)
T ss_pred cceeeec
Confidence 6554444
No 240
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=88.61 E-value=14 Score=33.37 Aligned_cols=135 Identities=14% Similarity=0.062 Sum_probs=66.0
Q ss_pred cCCeEEEEE---CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCc-eEEEccCCcEEEeeecCCccccccceEEEcCC
Q 023085 12 RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 12 ~~g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~g-i~~~~~~g~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+|.|...+ +.+.+.+.++.+..+.-+.+.+.-+ |+......| +..+|.+|..+.... ......-..+|.+.+-
T Consensus 141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-SEAHSAPCRGICFSPS 219 (673)
T ss_pred cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-hhhccCCcCcceecCC
Confidence 556666665 2333444444333321233444443 332222334 444445552222111 1111122356777776
Q ss_pred Cc-EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 87 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 87 g~-l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.. |+++. .-+..|+.||..+.+.......-..-..++|.++|.+|.... ..++|+.||+..
T Consensus 220 ne~l~vsV-----------------G~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~-s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 220 NEALLVSV-----------------GYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN-SKGELIAYDMRS 281 (673)
T ss_pred ccceEEEe-----------------cccceEEEeecccccccceeeecCCcceeeecCCceEEEeec-CCceEEEEeccc
Confidence 54 55542 124578888876443222111111225678999997666665 468899999864
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.21 E-value=20 Score=32.73 Aligned_cols=117 Identities=16% Similarity=0.165 Sum_probs=63.5
Q ss_pred eEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC---CceEEEccCC--cEEEeeecCCccccccceEEEcCCCc
Q 023085 15 WIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS 88 (287)
Q Consensus 15 ~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~---~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~ 88 (287)
.++.+. +|....+......|+++....++|+=+..-++ .-+-.++..+ +-.+ ..+ -=|.+.+.+.|+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df---~eg----pRN~~~fnp~g~ 324 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF---PEG----PRNTAFFNPHGN 324 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC---CCC----CccceEECCCCC
Confidence 456665 55555555554556668888888864443322 3466666444 2222 111 125678899998
Q ss_pred EEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEEccCCCEEEEEeCC
Q 023085 89 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 89 l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
+.+-- | ++...|.+-.+|..+.+ .+.. ......-..|+|||++++.+.+.
T Consensus 325 ii~lA-----G---------FGNL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 325 IILLA-----G---------FGNLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEe-----e---------cCCCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEecc
Confidence 65521 0 12334556666654322 1111 11223345689999988888764
No 242
>KOG4328 consensus WD40 protein [Function unknown]
Probab=88.21 E-value=18 Score=32.21 Aligned_cols=28 Identities=11% Similarity=-0.015 Sum_probs=21.6
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
..+...|+|.+.. .++....+.|..||.
T Consensus 371 sV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 371 SVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred eeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 4567789998886 555567788999996
No 243
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.08 E-value=2.9 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=19.4
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEc
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALS 142 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (287)
.+.|..+|+.+++..........|.+++++
T Consensus 13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 567888998777654443445667777653
No 244
>smart00284 OLF Olfactomedin-like domains.
Probab=87.95 E-value=14 Score=30.59 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=28.8
Q ss_pred EEEEeCCCCeeEEeeccccc----cceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 116 LLKYDPSSNITTLVADGFYF----ANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
.+.+|..+++-..+.-++.. ...+.+.|..+.||+-+ ++.+..|++
T Consensus 202 ~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 202 FYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred EEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 55778776554433222322 33467889888899987 456777775
No 245
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=87.88 E-value=28 Score=33.94 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCcEEEEeCCCceEEEc-cCC
Q 023085 43 EGHLIICDNANGLHKVS-EDG 62 (287)
Q Consensus 43 dg~l~v~~~~~gi~~~~-~~g 62 (287)
+|.||+++....++.+| .+|
T Consensus 194 gg~lYv~t~~~~V~ALDa~TG 214 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATG 214 (764)
T ss_pred CCEEEEECCCCeEEEEECCCC
Confidence 67999998766799999 777
No 246
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=87.41 E-value=28 Score=33.48 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-cceEEEccCCCEEEEEeCCC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~v~~~~~ 155 (287)
.++++++..+|...++ +...+.+.++...+++ +.+.+.+.. ...++++||+. +|......
T Consensus 253 ~V~~L~fS~~G~~LlS-----------------GG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLS-----------------GGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLED 313 (792)
T ss_pred ccceeEEecCCceEee-----------------cccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEecC
Confidence 5778888888876664 2345566677666666 445444443 46889999998 55544556
Q ss_pred CEEEEEEecCC----CCcceeEE----eccCCCCCcceeeCC-CCCEEEEEe
Q 023085 156 FRCRKYWLKGE----RKGKLETF----AENLPGAPDNINLAP-DGTFWIAII 198 (287)
Q Consensus 156 ~~l~~~~~~~~----~~~~~~~~----~~~~~~~~~~i~~d~-~G~lwv~~~ 198 (287)
+.|..+...+. .+...... .....+.+.++++|+ -+.+-+...
T Consensus 314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 77776665321 11111111 011234567888888 344444333
No 247
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.40 E-value=15 Score=30.18 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=46.1
Q ss_pred cccccceEEEcC-CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec-cccccceEEE-ccCCCEEEE
Q 023085 74 KLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVAL-SRDEDYVVV 150 (287)
Q Consensus 74 ~~~~~~~l~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~-~~~~~~l~v 150 (287)
+.+.+|+|.+|+ .+.++++ .+++.++.+|.++|++..... ...+.+.++- ...++ + +
T Consensus 113 evPeINam~ldP~enSi~~A------------------gGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q-i-l 172 (325)
T KOG0649|consen 113 EVPEINAMWLDPSENSILFA------------------GGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ-I-L 172 (325)
T ss_pred cCCccceeEeccCCCcEEEe------------------cCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc-e-e
Confidence 456789999996 4677774 356789999999999877543 3344455543 33344 2 3
Q ss_pred EeCCCCEEEEEEecC
Q 023085 151 CESWKFRCRKYWLKG 165 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~ 165 (287)
+....+.+..+|..+
T Consensus 173 sG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKT 187 (325)
T ss_pred ecCCCccEEEEeccc
Confidence 333456677777643
No 248
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=87.39 E-value=21 Score=32.13 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=34.6
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC--EEEEEEecCCC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF--RCRKYWLKGER 167 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~--~l~~~~~~~~~ 167 (287)
..+++++.++++...+..-........|+|||+.|.++....+ .|+.+|+.+..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 4578888776665555442222334568999998888776544 47777776543
No 249
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=87.07 E-value=0.66 Score=25.97 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=16.9
Q ss_pred CCcceeeCCCCCEEEEEec
Q 023085 181 APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 181 ~~~~i~~d~~G~lwv~~~~ 199 (287)
.+.+|++|++|++|++...
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 4788999999999999876
No 250
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=86.76 E-value=28 Score=32.68 Aligned_cols=171 Identities=12% Similarity=0.010 Sum_probs=79.2
Q ss_pred CcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
|+|+-..-+|.|.-|| +++...-....+.+...|++.+.+. +.|+-..+-++.++ ..+ ++.-...... -..+-
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq--~sRvL 158 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ--KSRVL 158 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc--cceEE
Confidence 4455444566666666 4443333333333333888877774 56663222233333 333 3222111111 13456
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe-e---ccccc-cc----eEEEccCCCEEEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-A---DGFYF-AN----GVALSRDEDYVVV 150 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---~~~~~-~~----~i~~~~~~~~l~v 150 (287)
++..++++.-.++ +..++.+-.+|..++....+ . ..+.. -. ++.+..++. +.-
T Consensus 159 slsw~~~~~~i~~-----------------Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s 220 (691)
T KOG2048|consen 159 SLSWNPTGTKIAG-----------------GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS 220 (691)
T ss_pred EEEecCCccEEEe-----------------cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEE
Confidence 7888888873442 23344566667655543221 1 11111 12 333334443 333
Q ss_pred EeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEec
Q 023085 151 CESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~ 199 (287)
.+ ..+.+..||....++-+. +. ........++.+.++ .++.+...
T Consensus 221 gD-S~G~V~FWd~~~gTLiqS--~~-~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 221 GD-SAGTVTFWDSIFGTLIQS--HS-CHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred ec-CCceEEEEcccCcchhhh--hh-hhhcceeEEEEcCCCCeEEEccCC
Confidence 33 356677777543322111 10 111235567777664 57766665
No 251
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.44 E-value=2.6 Score=28.53 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=31.9
Q ss_pred CCeEEEEECCceEEEEeeCCccccCeEECCCC-cEEEEeCC-CceEEEc
Q 023085 13 DGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS 59 (287)
Q Consensus 13 ~g~i~~~~~~~~~~~~~~~~~~~~~i~~d~dg-~l~v~~~~-~gi~~~~ 59 (287)
-+.|..|+.++.......-..|+ ||++++++ .|||++.. +.|.++.
T Consensus 35 ~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 35 WGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred CceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence 46677777545555555556788 99999988 58999755 4566654
No 252
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.28 E-value=20 Score=30.53 Aligned_cols=138 Identities=9% Similarity=0.031 Sum_probs=62.1
Q ss_pred CCCcEEEEe-cCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cC-C-cEEEeeecCCcccc
Q 023085 3 KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLR 76 (287)
Q Consensus 3 ~~G~l~~~~-~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~-g-~~~~~~~~~~~~~~ 76 (287)
+.|.|-++- .++-+.-|| .|+..........+. .+.+++.|.-|+.....+|-++. .+ . +..+... .
T Consensus 137 PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~------~ 209 (362)
T KOG0294|consen 137 PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-LVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP------K 209 (362)
T ss_pred CCCceEEEEcCCceeeeehhhcCccceeeccCCcce-eeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc------c
Confidence 344444433 333344445 444433333333344 56667777644443344444443 11 2 2222110 2
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEE-Ec-cCCCEEEEEeC
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVA-LS-RDEDYVVVCES 153 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~-~~-~~~~~l~v~~~ 153 (287)
.+..+.+...+.|.++ ..+..+-.+|.+++. ...+...-....++. +. |++. +.++-+
T Consensus 210 r~l~~~~l~~~~L~vG------------------~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaS 270 (362)
T KOG0294|consen 210 RILCATFLDGSELLVG------------------GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE-YLVTAS 270 (362)
T ss_pred cceeeeecCCceEEEe------------------cCCceEEEeccCCCccceeeecchhheeeeEEEecCCce-EEEEec
Confidence 3445556666666663 223345555654322 111222222334454 33 4444 455555
Q ss_pred CCCEEEEEEecCC
Q 023085 154 WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ~~~~l~~~~~~~~ 166 (287)
..+.|.+||++..
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 5677888887643
No 253
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=86.21 E-value=23 Score=31.31 Aligned_cols=142 Identities=11% Similarity=-0.042 Sum_probs=75.7
Q ss_pred CCcEEEEecCCeEEEEE-CC-ceE-------EEEe-eCCccccCeEECCC-CcEEEEeCC-CceEEEc-cCC-cEEEeee
Q 023085 4 NGVIYTATRDGWIKRLQ-DG-TWV-------NWKF-IDSQTLVGLTSTKE-GHLIICDNA-NGLHKVS-EDG-VENFLSY 69 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~~-~~~-------~~~~-~~~~~~~~i~~d~d-g~l~v~~~~-~gi~~~~-~~g-~~~~~~~ 69 (287)
.|.|.-++.++.|+.++ +. ... .+.. ...... ..++.+. ..|+.+-.. ..+...| +.+ .++....
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 56777777888898888 21 110 0111 111112 3344332 244444222 3355555 432 1111000
Q ss_pred cCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCC--eeEEeeccccccceEEEccCCCE
Q 023085 70 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDY 147 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~ 147 (287)
......++++++.+.+...++. +..++.|..+|++.- .+..+...-.....+.|+|..+.
T Consensus 269 --~ah~~~vn~~~fnp~~~~ilAT----------------~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 269 --KAHSAEVNCVAFNPFNEFILAT----------------GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred --cccCCceeEEEeCCCCCceEEe----------------ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 1112457888888876544432 234678888887522 12222222334456789999888
Q ss_pred EEEEeCCCCEEEEEEec
Q 023085 148 VVVCESWKFRCRKYWLK 164 (287)
Q Consensus 148 l~v~~~~~~~l~~~~~~ 164 (287)
+..+....+++..+|+.
T Consensus 331 vLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLS 347 (422)
T ss_pred eeEecccCCcEEEEecc
Confidence 88887777889999986
No 254
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=86.19 E-value=20 Score=30.57 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=37.1
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCC-CCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..|--+..+|.|+.|-++ .+..|..|....+ .....+. .-.+.+.+|..+++|+.-+++..
T Consensus 332 ~~p~RL~lsP~g~~lA~s--~gs~l~~~~se~g~~~~~~e~---~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVS--FGSDLKVFASEDGKDYPELED---IHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCceEEEeCCCCcEEEee--cCCceEEEEcccCccchhHHH---hhcCceeeEEecCCCcEEeeecc
Confidence 456678889999865555 3556777665432 1111111 12235678999999987776654
No 255
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=86.10 E-value=18 Score=34.03 Aligned_cols=128 Identities=9% Similarity=0.005 Sum_probs=67.1
Q ss_pred ceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-----CEEEEEEecCCCCcceeEEeccCCCCCcceee-
Q 023085 114 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-----FRCRKYWLKGERKGKLETFAENLPGAPDNINL- 187 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 187 (287)
..+++||+.++++..++.-...-.+.....=+..||+..-.. ..+.+||+...+........ ..-.+...
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~----~~r~~~gv~ 424 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML----TRRSGHGVA 424 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC----cceeeeEEE
Confidence 579999999888877554322222222222233578765322 24778887543322211111 01112222
Q ss_pred CCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEe
Q 023085 188 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV 267 (287)
Q Consensus 188 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 267 (287)
--+|.||+.......+ ..-..+.+|||..+.-..... -.......+++.-
T Consensus 425 ~~~g~iYi~GG~~~~~----------------------------~~l~sve~YDP~t~~W~~~~~--M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 425 VLGGKLYIIGGGDGSS----------------------------NCLNSVECYDPETNTWTLIAP--MNTRRSGFGVAVL 474 (571)
T ss_pred EECCEEEEEcCcCCCc----------------------------cccceEEEEcCCCCceeecCC--cccccccceEEEE
Confidence 2378899988642100 012478999998776665442 1111223445556
Q ss_pred CCEEEEEe
Q 023085 268 DNHLYVIS 275 (287)
Q Consensus 268 ~g~l~i~~ 275 (287)
++.||+-+
T Consensus 475 ~~~iYvvG 482 (571)
T KOG4441|consen 475 NGKIYVVG 482 (571)
T ss_pred CCEEEEEC
Confidence 88888754
No 256
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=85.85 E-value=30 Score=32.18 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=45.2
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcch
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~ 212 (287)
.+..+.|.|-.-.|+|+.. ..|..||+....+.+ ... +..-....|++++.| ||.+++...+..++++...++
T Consensus 568 ~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvK--kL~-tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk 641 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVK--KLL-TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK 641 (733)
T ss_pred ceeEEEecCCCceEEEEec--cceEEEehhHHHHHH--HHh-cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc
Confidence 4556678887778899864 457788865321111 000 111145678888876 788888777767777665544
No 257
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.82 E-value=25 Score=31.27 Aligned_cols=107 Identities=13% Similarity=-0.009 Sum_probs=54.9
Q ss_pred ceEEEcCCCcEEE-E-cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCC--
Q 023085 79 NDVVEASDGSLYF-T-VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-- 154 (287)
Q Consensus 79 ~~l~~d~~g~l~v-~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~-- 154 (287)
....+.++|+.++ + +.+ +.....|+.+|.++|+...-.-......+++|.++++.+|.+...
T Consensus 127 ~~~~~Spdg~~la~~~s~~--------------G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDG--------------GSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEETTTSSEEEEEEEET--------------TSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeECCCCCEEEEEecCC--------------CCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcc
Confidence 3567778887544 2 111 222346889999888654321111122238899998887777643
Q ss_pred --------CCEEEEEEecCCCCcceeEEeccCCCC-CcceeeCCCCC-EEEEEec
Q 023085 155 --------KFRCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGT-FWIAIIK 199 (287)
Q Consensus 155 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~d~~G~-lwv~~~~ 199 (287)
...|+++.+..+.......|....+.. .-++..+++|+ |.+....
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 234777776543222223333222111 23566677876 4444443
No 258
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.77 E-value=28 Score=31.85 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=69.8
Q ss_pred cEEEEec-----CCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEccCC-cEEEeeecCCcccccc
Q 023085 6 VIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 6 ~l~~~~~-----~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~~~g-~~~~~~~~~~~~~~~~ 78 (287)
.||+.+. ....+.+| +|..+............+...++|++++... ..+..+|..| .........+. ...=
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~-~~~H 192 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGY-YDFH 192 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTE-E-B-
T ss_pred cEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcc-cccc
Confidence 4555543 35566677 7776544333222220266789999998874 6788898667 32222221111 1122
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeec--------cc-----------------
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------GF----------------- 133 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--------~~----------------- 133 (287)
+++...++|++.+........... . ........|..+| .+|++..... ..
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~-~---~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~ 267 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDED-K---DVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGG 267 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTT
T ss_pred cccEECCCCCEEEEEeecccccCC-C---CccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCC
Confidence 567788899876642210000000 0 0011123466666 4465443210 00
Q ss_pred ---cccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 134 ---YFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 134 ---~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
...|++.+++....|.++.+..+.|++++..+
T Consensus 268 ~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 268 RDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp SBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 12467888886667889888778999999543
No 259
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.57 E-value=38 Score=33.19 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=49.3
Q ss_pred ceEEEEeCCCCeeEE--eeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCC
Q 023085 114 GQLLKYDPSSNITTL--VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG 191 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G 191 (287)
-.+||++.. +.++. .-.......++.|+|..+ +.++++....|.+||++.+ ...+.|.. .+.+==-++..+..
T Consensus 230 VKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR--t~v~tfrr-endRFW~laahP~l 304 (1202)
T KOG0292|consen 230 VKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR--TSVQTFRR-ENDRFWILAAHPEL 304 (1202)
T ss_pred eeEEEeccc-cceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc--cceeeeec-cCCeEEEEEecCCc
Confidence 468998753 44433 223445567888999776 7888877788999998643 22333321 11111125666777
Q ss_pred CEEEEEec
Q 023085 192 TFWIAIIK 199 (287)
Q Consensus 192 ~lwv~~~~ 199 (287)
|||.+...
T Consensus 305 NLfAAgHD 312 (1202)
T KOG0292|consen 305 NLFAAGHD 312 (1202)
T ss_pred ceeeeecC
Confidence 78777766
No 260
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=85.43 E-value=21 Score=30.12 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=69.7
Q ss_pred ccccCeEECCCCcEEEEeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeecc
Q 023085 33 QTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG 110 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~ 110 (287)
..+ -+.++|+|.++++... +.|+..+..| .+.+.... .....+.++...++++..++.
T Consensus 49 eI~-~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--gHsgAVM~l~~~~d~s~i~S~----------------- 108 (338)
T KOG0265|consen 49 EIY-TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--GHSGAVMELHGMRDGSHILSC----------------- 108 (338)
T ss_pred eEE-EEEECCCCCeEeecCCcceEEEEeccccccceeeec--cccceeEeeeeccCCCEEEEe-----------------
Confidence 344 6788999998887533 4566665444 33322211 123466778888899888863
Q ss_pred CCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 111 KPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 111 ~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..+..|..+|.++|+.... .......|.+.-.-.|-.|..+.+..+.+..||+.
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 2356788899888875443 33344555554333455566666777788888875
No 261
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.35 E-value=14 Score=32.30 Aligned_cols=83 Identities=12% Similarity=0.080 Sum_probs=50.0
Q ss_pred EEEEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC-cEEEeeecCCccccccce
Q 023085 7 IYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAND 80 (287)
Q Consensus 7 l~~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~ 80 (287)
+-.+|..+.+..|+ .++...... ..-+|.+.+..+++|+ +|+++....+..|| +.+ .... ...+. -.++..
T Consensus 219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~kg~-tGsirs 295 (412)
T KOG3881|consen 219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLKGI-TGSIRS 295 (412)
T ss_pred EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccCCc-cCCcce
Confidence 44445677888888 232221111 1123444788899995 78888767799999 666 2221 11121 247788
Q ss_pred EEEcCCCcEEEE
Q 023085 81 VVEASDGSLYFT 92 (287)
Q Consensus 81 l~~d~~g~l~v~ 92 (287)
|.+++.+.+..+
T Consensus 296 ih~hp~~~~las 307 (412)
T KOG3881|consen 296 IHCHPTHPVLAS 307 (412)
T ss_pred EEEcCCCceEEe
Confidence 999988777664
No 262
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=18 Score=29.06 Aligned_cols=131 Identities=15% Similarity=0.094 Sum_probs=72.7
Q ss_pred ceEEEEeCCCCeeEEe---eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCC
Q 023085 114 GQLLKYDPSSNITTLV---ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 190 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 190 (287)
..+.+++..+|+...- +++-.+..|+.-. +..+|.-....+.-++||.+. +.....+ ..+|.-=|++.|.+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t--~~~lg~~--~y~GeGWgLt~d~~ 141 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADT--LEELGRF--SYEGEGWGLTSDDK 141 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHH--hhhhccc--ccCCcceeeecCCc
Confidence 4577788776664321 2223455677644 667888887777777888653 1222222 12222335666644
Q ss_pred CCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCc-EEEEEE-CCCCccccceEEEEEeC
Q 023085 191 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGT-IIRNLV-DPTGQLMSFVTSGLQVD 268 (287)
Q Consensus 191 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~~~-~~~~~~~~~~~~~~~~~ 268 (287)
+||++... ..+...||+.- ....+. ..+|.+......+--.+
T Consensus 142 -~LimsdGs-----------------------------------atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~Vd 185 (262)
T COG3823 142 -NLIMSDGS-----------------------------------ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVD 185 (262)
T ss_pred -ceEeeCCc-----------------------------------eEEEecCHHHhhhcceEEEEECCeecccccceeeec
Confidence 49988876 35555566531 111111 12455555555555567
Q ss_pred CEEEEEecCCCeEEEEeC
Q 023085 269 NHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 269 g~l~i~~~~~~~i~~~~~ 286 (287)
|.||.--+-.++|.+++-
T Consensus 186 G~lyANVw~t~~I~rI~p 203 (262)
T COG3823 186 GELYANVWQTTRIARIDP 203 (262)
T ss_pred cEEEEeeeeecceEEEcC
Confidence 777776666677777653
No 263
>PHA02790 Kelch-like protein; Provisional
Probab=84.87 E-value=31 Score=31.57 Aligned_cols=157 Identities=9% Similarity=0.046 Sum_probs=74.5
Q ss_pred eEEEEE--CCceEEEEeeCC-ccccCeEECCCCcEEEEeCC---CceEEEc-cCC-cEEEeeecCCccccccceEEEcCC
Q 023085 15 WIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD 86 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~-~~~~~i~~d~dg~l~v~~~~---~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~ 86 (287)
.+.+|+ .+.+......+. ... .-+..-+|.||+.... ..+.+++ .++ ++.+.+.. .+.... + ++.-+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~--~~r~~~-~-~~~~~ 362 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL--KPRCNP-A-VASIN 362 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC--CCCccc-E-EEEEC
Confidence 466777 444544332211 111 1222347889887432 2367777 444 55543221 111111 2 23336
Q ss_pred CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce-EEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 87 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 87 g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
|.||+.... ......+.+|||.+++++..+.......+ .+..-++ .||+.. +...+|+++.
T Consensus 363 g~IYviGG~--------------~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 363 NVIYVIGGH--------------SETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLVG---RNAEFYCESS 424 (480)
T ss_pred CEEEEecCc--------------CCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEEC---CceEEecCCC
Confidence 899995211 00123578899998888765432111111 1222334 588874 3467788654
Q ss_pred CCCcceeEEeccCCC--CCcceeeCCCCCEEEEEec
Q 023085 166 ERKGKLETFAENLPG--APDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 166 ~~~~~~~~~~~~~~~--~~~~i~~d~~G~lwv~~~~ 199 (287)
++ ..... ..+. .-.+++. -+|+||+....
T Consensus 425 ~~---W~~~~-~m~~~r~~~~~~v-~~~~IYviGG~ 455 (480)
T PHA02790 425 NT---WTLID-DPIYPRDNPELII-VDNKLLLIGGF 455 (480)
T ss_pred Cc---EeEcC-CCCCCccccEEEE-ECCEEEEECCc
Confidence 32 22211 1110 1112332 26778888754
No 264
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=84.74 E-value=29 Score=31.15 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=72.6
Q ss_pred CCCc-EEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEEeCC-CceEEEc-cCC-cEEEeeecCCccccc
Q 023085 3 KNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF 77 (287)
Q Consensus 3 ~~G~-l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~~~~~~~~~~ 77 (287)
.+|. |-.|..+|.+..|+ +|...........|+-.+....+|...++... +.+..+| .+| ..+...... .
T Consensus 245 ~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s-----~ 319 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS-----A 319 (524)
T ss_pred CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc-----C
Confidence 3564 44556777777777 55544332222233326777788876555433 4466677 567 555433221 1
Q ss_pred c-ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCC
Q 023085 78 A-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 78 ~-~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
| .++..-.+.. +++.. ....-.|++++.+ ..+..+...-...+.+-++|.+. |..+.+...
T Consensus 320 ~~lDVdW~~~~~-F~ts~---------------td~~i~V~kv~~~-~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~ 381 (524)
T KOG0273|consen 320 PALDVDWQSNDE-FATSS---------------TDGCIHVCKVGED-RPVKTFIGHHGEVNALKWNPTGS-LLASCSDDG 381 (524)
T ss_pred CccceEEecCce-EeecC---------------CCceEEEEEecCC-CcceeeecccCceEEEEECCCCc-eEEEecCCC
Confidence 2 1221111112 22110 0112346667654 44555555555678889999997 556656666
Q ss_pred EEEEEEec
Q 023085 157 RCRKYWLK 164 (287)
Q Consensus 157 ~l~~~~~~ 164 (287)
.+..|...
T Consensus 382 TlkiWs~~ 389 (524)
T KOG0273|consen 382 TLKIWSMG 389 (524)
T ss_pred eeEeeecC
Confidence 67666643
No 265
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=84.34 E-value=15 Score=32.02 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=72.3
Q ss_pred ccCeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 35 LVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 35 ~~~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
++.+...+.+.+|-+.+.+.|-+.| .+| ...+... ...+++...+...|.++..
T Consensus 263 Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs----------------- 319 (423)
T KOG0313|consen 263 VSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS----------------- 319 (423)
T ss_pred eeeEEEcCCCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------
Confidence 3355566667788888888888888 666 4444221 2456777777777877532
Q ss_pred CCceEEEEeCCCCeeEEe----eccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 112 PHGQLLKYDPSSNITTLV----ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
....+..+||+++.-+.+ ........++.++|....++++.+..+.+..+|..
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 234577788876543332 22334567888999998999999988888888864
No 266
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=83.95 E-value=24 Score=29.42 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=42.1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC--
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-- 153 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~-- 153 (287)
..+.++.+|.+....++ +..+..+-.+|-++|+.............+-|+.+|+.+.++..
T Consensus 53 GavW~~Did~~s~~liT-----------------GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLIT-----------------GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred ceEEEEEecCCcceeee-----------------ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhh
Confidence 35677777777666665 23345555566666765544443344567778888875444332
Q ss_pred --CCCEEEEEEec
Q 023085 154 --WKFRCRKYWLK 164 (287)
Q Consensus 154 --~~~~l~~~~~~ 164 (287)
....|..|++.
T Consensus 116 mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 116 MGYTCFVSVFDIR 128 (327)
T ss_pred cCcceEEEEEEcc
Confidence 12346677765
No 267
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.70 E-value=43 Score=33.13 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=44.4
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++..++++.+.++.+ -++.|..++..+-+.. .+......+.|+.|||-|++ ++...
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky--~ASqs 190 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY--FASQS 190 (942)
T ss_pred CccceeccCCCccEEEEec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCe--eeeec
Confidence 4567788888888888632 2567888887655433 33344567899999999983 44433
Q ss_pred C-CEEEEEE
Q 023085 155 K-FRCRKYW 162 (287)
Q Consensus 155 ~-~~l~~~~ 162 (287)
. ..|..|.
T Consensus 191 dDrtikvwr 199 (942)
T KOG0973|consen 191 DDRTLKVWR 199 (942)
T ss_pred CCceEEEEE
Confidence 3 4455554
No 268
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=83.05 E-value=6 Score=22.04 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=21.0
Q ss_pred CcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEEEEeC
Q 023085 244 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 244 g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
|+.++.+..+. . ........+++||+++. .+.|..+|.
T Consensus 1 G~~~W~~~~~~-~---~~~~~~v~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTGG-P---IWSSPAVAGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-T-TSEEEEEET
T ss_pred CceeEEEECCC-C---cCcCCEEECCEEEEEcC-CCEEEEEeC
Confidence 45666666532 1 22445667899999997 567777764
No 269
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=82.74 E-value=31 Score=29.93 Aligned_cols=135 Identities=11% Similarity=0.069 Sum_probs=65.4
Q ss_pred EEecCCeEEEEE--CCceEEEEe-eCCccccCeEECCCCcEEEEeCCC-ceEEEccCC-cEEEeeecCCccccccceEEE
Q 023085 9 TATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG-VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 9 ~~~~~g~i~~~~--~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~-gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~ 83 (287)
.++.++.|..++ +|+.+.... ...... .|+++..|++.+..... .+...+-++ .+.+... ..+...+..+.+
T Consensus 125 ~as~d~tikv~D~~tg~~e~~LrGHt~sv~-di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~--~gh~h~vS~V~f 201 (406)
T KOG0295|consen 125 SASEDATIKVFDTETGELERSLRGHTDSVF-DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL--IGHEHGVSSVFF 201 (406)
T ss_pred EecCCceEEEEEccchhhhhhhhcccccee-EEEEecCccEEEecCCccchhheeHHHHHHHHHHh--cCcccceeeEEE
Confidence 445788888888 676644322 222345 88999999877765332 122222111 1111100 011234556666
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
-+.|...++.+ .+..+..++-+++. +..+........-+.+.-||. |..+.+...+|..+-
T Consensus 202 ~P~gd~ilS~s-----------------rD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 202 LPLGDHILSCS-----------------RDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWV 263 (406)
T ss_pred EecCCeeeecc-----------------cccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecCCCceEEEEE
Confidence 66665444321 22334444434343 333333333444444555554 555555555666655
Q ss_pred ec
Q 023085 163 LK 164 (287)
Q Consensus 163 ~~ 164 (287)
..
T Consensus 264 ~~ 265 (406)
T KOG0295|consen 264 VA 265 (406)
T ss_pred ec
Confidence 54
No 270
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=82.53 E-value=29 Score=30.80 Aligned_cols=128 Identities=9% Similarity=0.003 Sum_probs=67.0
Q ss_pred CCeEEEEE--CCceEEEEeeCCc-c--ccCeEECCCCcEEEEeCC------------CceEEEc-cCC-cEEEeeecCCc
Q 023085 13 DGWIKRLQ--DGTWVNWKFIDSQ-T--LVGLTSTKEGHLIICDNA------------NGLHKVS-EDG-VENFLSYVNGS 73 (287)
Q Consensus 13 ~g~i~~~~--~~~~~~~~~~~~~-~--~~~i~~d~dg~l~v~~~~------------~gi~~~~-~~g-~~~~~~~~~~~ 73 (287)
.+.+++|+ +.++..+..+.+- | .+.++.-+.|.||+-... .-++.++ .+. ++.+... .++
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~P 175 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGP 175 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCC
Confidence 35788888 6677777654321 1 215666788888876311 1367777 666 6666432 123
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeecccccc---ceEE--EccCCCEE
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVA--LSRDEDYV 148 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~i~--~~~~~~~l 148 (287)
...+-+.|++-+.--|.|...+ .....-.--+-||.+|.++-++..+......| .|.+ ..|++. +
T Consensus 176 S~RSGHRMvawK~~lilFGGFh---------d~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i 245 (521)
T KOG1230|consen 176 SPRSGHRMVAWKRQLILFGGFH---------DSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-I 245 (521)
T ss_pred CCCccceeEEeeeeEEEEccee---------cCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-E
Confidence 3334455655544444442111 00000001235888888877766654433223 3544 457777 4
Q ss_pred EEE
Q 023085 149 VVC 151 (287)
Q Consensus 149 ~v~ 151 (287)
||.
T Consensus 246 ~vy 248 (521)
T KOG1230|consen 246 VVY 248 (521)
T ss_pred EEE
Confidence 544
No 271
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=81.75 E-value=29 Score=28.79 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=28.8
Q ss_pred EEEEeCCCCeeEEeeccc----cccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 116 LLKYDPSSNITTLVADGF----YFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 116 v~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
-+.+|..+++...+.-.+ .....+.+.|..+.||+-+. +.+..|++
T Consensus 197 ~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~--G~~v~Y~v 246 (250)
T PF02191_consen 197 FYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN--GYQVTYDV 246 (250)
T ss_pred EEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC--CeEEEEEE
Confidence 456787766554332222 23345778898888999874 55666665
No 272
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.10 E-value=30 Score=28.62 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=71.9
Q ss_pred CeEECCCCcEEEE-e---CCCceEEEccCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~-~---~~~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
..++.+||+.+++ . ....++....++ ...+.. +. .+..-.++++|.+|+.+.. .
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~---g~---~l~~PS~d~~g~~W~v~~~---------------~ 86 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT---GG---SLTRPSWDPDGWVWTVDDG---------------S 86 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc---CC---ccccccccCCCCEEEEEcC---------------C
Confidence 7888999975444 3 123466665444 444321 22 2334468889999997432 1
Q ss_pred CCceEEEEeCCCCeeEEe--e-cccc-ccceEEEccCCCEEEEEeC--CCCEEEEEEecCCCCc------ceeEEeccCC
Q 023085 112 PHGQLLKYDPSSNITTLV--A-DGFY-FANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKG------KLETFAENLP 179 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~--~-~~~~-~~~~i~~~~~~~~l~v~~~--~~~~l~~~~~~~~~~~------~~~~~~~~~~ 179 (287)
....+.+ +..++..... . .... ....+.++|||..+-+.-. .+.+|+...+....-+ ..........
T Consensus 87 ~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~ 165 (253)
T PF10647_consen 87 GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL 165 (253)
T ss_pred CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence 1112222 2222332222 1 1122 4567889999987665542 3467777665421111 1111111111
Q ss_pred CCCcceeeCCCCCEEEEEec
Q 023085 180 GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 180 ~~~~~i~~d~~G~lwv~~~~ 199 (287)
.....+.--.++.|.+....
T Consensus 166 ~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 166 SDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred CcceeeeecCCCEEEEEeCC
Confidence 23455666677888887765
No 273
>PHA03098 kelch-like protein; Provisional
Probab=80.63 E-value=48 Score=30.70 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=63.6
Q ss_pred eEEEEE--CCceEEEEeeC-CccccCeEECCCCcEEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccceEEE
Q 023085 15 WIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE 83 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~ 83 (287)
.+++|+ ++++......+ .....+.+ .-+++||+.... ..+.+++ .++ ++...+.. .+. .-.++ +
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp--~~r-~~~~~-~ 386 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI--FPR-YNPCV-V 386 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC--cCC-ccceE-E
Confidence 467777 55554443221 11111222 236788877422 1367788 455 55543211 111 11122 2
Q ss_pred cCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccce-EEEccCCCEEEEEeCCC-------
Q 023085 84 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESWK------- 155 (287)
Q Consensus 84 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~l~v~~~~~------- 155 (287)
.-++.+|+.....+. ......+++||+.++++...........+ .+...++ .+|+..-..
T Consensus 387 ~~~~~iYv~GG~~~~-----------~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~ 454 (534)
T PHA03098 387 NVNNLIYVIGGISKN-----------DELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKV 454 (534)
T ss_pred EECCEEEEECCcCCC-----------CcccceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcc
Confidence 236789985221000 01124689999998888765432111111 1222234 478764211
Q ss_pred -CEEEEEEecCC
Q 023085 156 -FRCRKYWLKGE 166 (287)
Q Consensus 156 -~~l~~~~~~~~ 166 (287)
..+++||+...
T Consensus 455 ~~~v~~yd~~~~ 466 (534)
T PHA03098 455 YNIVESYNPVTN 466 (534)
T ss_pred cceEEEecCCCC
Confidence 23788887543
No 274
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=78.81 E-value=60 Score=30.75 Aligned_cols=101 Identities=12% Similarity=0.177 Sum_probs=50.9
Q ss_pred CeEECCCCcEEEEeCCCceEEEccCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 37 GLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
.++..+++ .|++..+....++-..| +..+.. ....+.++++-+++.+.=+. -+|
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~g-----HtD~VRgL~vl~~~~flScs------------------NDg 200 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSG-----HTDCVRGLAVLDDSHFLSCS------------------NDG 200 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccCCchhhhhcc-----chhheeeeEEecCCCeEeec------------------CCc
Confidence 66666776 55554343344443233 444322 12356677777665543321 135
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
.|..++.....+..+.....+...+.....++ +.++....+++..|.
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWK 247 (745)
T ss_pred eEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEee
Confidence 56666664333444444445556665444444 566654445555554
No 275
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.66 E-value=60 Score=30.59 Aligned_cols=110 Identities=13% Similarity=0.108 Sum_probs=65.0
Q ss_pred CeEE-CCCCcEEEEeCC-CceEEEc-cCC-cEEEee------ecCC-ccccccceEEEcCCCcEEEEcCCCCCCCcceee
Q 023085 37 GLTS-TKEGHLIICDNA-NGLHKVS-EDG-VENFLS------YVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCL 105 (287)
Q Consensus 37 ~i~~-d~dg~l~v~~~~-~gi~~~~-~~g-~~~~~~------~~~~-~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~ 105 (287)
.++. .++..+.++..- +.|+..| ..| .+.+.. ...+ .+...++.++..+.|+++++
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs------------- 188 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS------------- 188 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe-------------
Confidence 5666 444455544222 5688888 666 322111 1111 23456788888888888885
Q ss_pred eeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 106 DILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 106 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+...+-|..||+.+++... +........-+.++.||+.+.-+. ..+.|..|++.
T Consensus 189 ----Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s-SDgtIrlWdLg 243 (735)
T KOG0308|consen 189 ----GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS-SDGTIRLWDLG 243 (735)
T ss_pred ----cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC-CCceEEeeecc
Confidence 2334567788988765432 333445566777888998655554 45677778764
No 276
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=78.29 E-value=48 Score=29.32 Aligned_cols=105 Identities=13% Similarity=0.129 Sum_probs=58.2
Q ss_pred CeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.+...|+|| |.+++ ..|-+-+- -.. ++.+. ......+.++....+|+-.|+. ..
T Consensus 101 ~v~WtPeGRRLltgs-~SGEFtLWNg~~fnFEtil----QaHDs~Vr~m~ws~~g~wmiSg-----------------D~ 158 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGS-QSGEFTLWNGTSFNFETIL----QAHDSPVRTMKWSHNGTWMISG-----------------DK 158 (464)
T ss_pred eEEEcCCCceeEeec-ccccEEEecCceeeHHHHh----hhhcccceeEEEccCCCEEEEc-----------------CC
Confidence 566788884 55555 33433221 111 22221 1122346778888888766642 23
Q ss_pred CceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.|.|-++++.-..++.+. ........++|+|... .|++.+..++|..+|..
T Consensus 159 gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 159 GGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFR 210 (464)
T ss_pred CceEEecccchhhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEecc
Confidence 345556666433333222 2234567889998544 78888888888888853
No 277
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=78.03 E-value=48 Score=29.22 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=34.3
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.+..|..++..+|+-..-.........+.|+.+|. +.++.+...+|..+|...
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCC
Confidence 34567777777776333222333446677888998 556656678899999753
No 278
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=77.66 E-value=74 Score=31.17 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=72.8
Q ss_pred CcEEEEe--cCCeEEEEE--CCce-EEEEeeCCccccCeEEC------CCCcEEEEeCCCceEEEc-c-CC-cEEEeeec
Q 023085 5 GVIYTAT--RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTST------KEGHLIICDNANGLHKVS-E-DG-VENFLSYV 70 (287)
Q Consensus 5 G~l~~~~--~~g~i~~~~--~~~~-~~~~~~~~~~~~~i~~d------~dg~l~v~~~~~gi~~~~-~-~g-~~~~~~~~ 70 (287)
-.+.+-+ ....|+++| .|++ ..|.-....|+..++-+ .+...+++-..++++++| + .| ........
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3455544 356889998 5655 33433322222133222 134678887678999999 4 33 21111111
Q ss_pred CCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeecccc-ccceEEEccCCCEE
Q 023085 71 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFY-FANGVALSRDEDYV 148 (287)
Q Consensus 71 ~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~l 148 (287)
.-..-....+++...+|.|-|+. ..|.|-.||.- |.. +...+.+. ..-+|.++.||+++
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs------------------~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGS------------------NKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWI 633 (794)
T ss_pred ccccCCCceEEEecCCceEEEEe------------------CCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEE
Confidence 11112344678888899988853 34555555532 221 11122333 34678899999965
Q ss_pred EEEeCCCCEEEEEEe
Q 023085 149 VVCESWKFRCRKYWL 163 (287)
Q Consensus 149 ~v~~~~~~~l~~~~~ 163 (287)
..++ ..-|..++.
T Consensus 634 laTc--~tyLlLi~t 646 (794)
T PF08553_consen 634 LATC--KTYLLLIDT 646 (794)
T ss_pred EEee--cceEEEEEE
Confidence 5554 344655553
No 279
>PHA02790 Kelch-like protein; Provisional
Probab=76.76 E-value=61 Score=29.71 Aligned_cols=181 Identities=10% Similarity=-0.045 Sum_probs=87.7
Q ss_pred CCcEEEEeCC------CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc
Q 023085 43 EGHLIICDNA------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 114 (287)
Q Consensus 43 dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~ 114 (287)
++.||+.... ..+.+++ .++ +..+.+.. .+... .++ +.-+|.||+.... ....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~--~~r~~-~~~-v~~~~~iYviGG~---------------~~~~ 331 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN--SPRLY-ASG-VPANNKLYVVGGL---------------PNPT 331 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC--chhhc-ceE-EEECCEEEEECCc---------------CCCC
Confidence 4567766321 2477888 555 55543321 11112 122 2346889985211 0123
Q ss_pred eEEEEeCCCCeeEEeeccccccceEE-EccCCCEEEEEeCC---CCEEEEEEecCCCCcceeEEeccCC-CCCcceeeCC
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVA-LSRDEDYVVVCESW---KFRCRKYWLKGERKGKLETFAENLP-GAPDNINLAP 189 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~l~v~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~d~ 189 (287)
.+.+|++.++++..+++-.....+.+ ..-++ .||+..-. ...+.+||+...+ ..... ..+ ......+.--
T Consensus 332 sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g-~IYviGG~~~~~~~ve~ydp~~~~---W~~~~-~m~~~r~~~~~~~~ 406 (480)
T PHA02790 332 SVERWFHGDAAWVNMPSLLKPRCNPAVASINN-VIYVIGGHSETDTTTEYLLPNHDQ---WQFGP-STYYPHYKSCALVF 406 (480)
T ss_pred ceEEEECCCCeEEECCCCCCCCcccEEEEECC-EEEEecCcCCCCccEEEEeCCCCE---EEeCC-CCCCccccceEEEE
Confidence 58899998887776543221111211 22344 48887432 1346677764322 11111 111 1111122223
Q ss_pred CCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCC
Q 023085 190 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDN 269 (287)
Q Consensus 190 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 269 (287)
+|.||+... .+.+|+|+.+.-..+.... ......+++..++
T Consensus 407 ~~~IYv~GG-------------------------------------~~e~ydp~~~~W~~~~~m~--~~r~~~~~~v~~~ 447 (480)
T PHA02790 407 GRRLFLVGR-------------------------------------NAEFYCESSNTWTLIDDPI--YPRDNPELIIVDN 447 (480)
T ss_pred CCEEEEECC-------------------------------------ceEEecCCCCcEeEcCCCC--CCccccEEEEECC
Confidence 577888653 3457888765444443211 1122345555688
Q ss_pred EEEEEecC-----CCeEEEEeC
Q 023085 270 HLYVISLT-----SNFIGKVQL 286 (287)
Q Consensus 270 ~l~i~~~~-----~~~i~~~~~ 286 (287)
+||+.+=. .+.|.+||.
T Consensus 448 ~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred EEEEECCcCCCcccceEEEEEC
Confidence 99986521 245667764
No 280
>PHA03098 kelch-like protein; Provisional
Probab=76.69 E-value=64 Score=29.89 Aligned_cols=195 Identities=10% Similarity=-0.001 Sum_probs=91.1
Q ss_pred CCCcEEEEeCC-------CceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 42 KEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 42 ~dg~l~v~~~~-------~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
-++.+|+.... ..+++++ .+. ++.+.... .+... .+++. -++.||+..... ....
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~R~~-~~~~~-~~~~lyv~GG~~------------~~~~ 356 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--YPRKN-PGVTV-FNNRIYVIGGIY------------NSIS 356 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--ccccc-ceEEE-ECCEEEEEeCCC------------CCEe
Confidence 45677776321 2477888 555 65543211 11112 22222 257888852110 0011
Q ss_pred CceEEEEeCCCCeeEEeecccc--ccceEEEccCCCEEEEEeCC------CCEEEEEEecCCCCcceeEEeccCC-CCCc
Q 023085 113 HGQLLKYDPSSNITTLVADGFY--FANGVALSRDEDYVVVCESW------KFRCRKYWLKGERKGKLETFAENLP-GAPD 183 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~l~v~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 183 (287)
...+++||+.+++++....... .....+. -++ .+|+..-. .+.+.+||+...+... .. ..+ ....
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~-~~p~~r~~ 430 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNN-LIYVIGGISKNDELLKTVECFSLNTNKWSK---GS-PLPISHYG 430 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCCccceEEE-ECC-EEEEECCcCCCCcccceEEEEeCCCCeeee---cC-CCCccccC
Confidence 2468899998888776542111 1122222 234 58876421 1457888875432211 11 111 1111
Q ss_pred ceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEE
Q 023085 184 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTS 263 (287)
Q Consensus 184 ~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~ 263 (287)
.-+.--++.||+........ . ......+.+||+..+.-..+.... . .....+
T Consensus 431 ~~~~~~~~~iyv~GG~~~~~--------------------~------~~~~~~v~~yd~~~~~W~~~~~~~-~-~r~~~~ 482 (534)
T PHA03098 431 GCAIYHDGKIYVIGGISYID--------------------N------IKVYNIVESYNPVTNKWTELSSLN-F-PRINAS 482 (534)
T ss_pred ceEEEECCEEEEECCccCCC--------------------C------CcccceEEEecCCCCceeeCCCCC-c-ccccce
Confidence 11222356788876431000 0 000135889998765544443211 1 111233
Q ss_pred EEEeCCEEEEEec-C----CCeEEEEeC
Q 023085 264 GLQVDNHLYVISL-T----SNFIGKVQL 286 (287)
Q Consensus 264 ~~~~~g~l~i~~~-~----~~~i~~~~~ 286 (287)
++..+++||+-+= . .+.|.+||.
T Consensus 483 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 483 LCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 3445788887542 2 356777775
No 281
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=76.58 E-value=5.7 Score=20.79 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=16.2
Q ss_pred CCCcEEEEecCCeEEEEE--CCce
Q 023085 3 KNGVIYTATRDGWIKRLQ--DGTW 24 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~--~~~~ 24 (287)
.+|.+|+++.+|.++.++ +|+.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcE
Confidence 356788888888888888 5544
No 282
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.38 E-value=25 Score=34.93 Aligned_cols=140 Identities=14% Similarity=0.050 Sum_probs=66.0
Q ss_pred CcEEEEecCCeEEEEE-CC-----ceEEE---EeeCCccccCeEECCCCcEEEEeCC--CceEEEccCC-cEEEeeecCC
Q 023085 5 GVIYTATRDGWIKRLQ-DG-----TWVNW---KFIDSQTLVGLTSTKEGHLIICDNA--NGLHKVSEDG-VENFLSYVNG 72 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~-----~~~~~---~~~~~~~~~~i~~d~dg~l~v~~~~--~gi~~~~~~g-~~~~~~~~~~ 72 (287)
|-|-=|..+|.|.-|+ +. +.+.+ ....+... ++-+.+.+..|+|..+ +.|++.|-+. -+++... ..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~-gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~ 158 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVL-GLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-SQ 158 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCcee-eeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC-CC
Confidence 3344445788888888 21 11111 11222333 6667777765555433 3477777333 3333222 11
Q ss_pred ccccccceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccc--cccceEEEccCCCEE
Q 023085 73 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGF--YFANGVALSRDEDYV 148 (287)
Q Consensus 73 ~~~~~~~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~l 148 (287)
.+...+..++...+- +|+.+ +...+....+|.+..+ +..+.... ..-+.++|.|+.-+-
T Consensus 159 ~~~~eI~~lsWNrkvqhILAS-----------------~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 159 APPSEIKCLSWNRKVSHILAS-----------------GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred CCcccceEeccchhhhHHhhc-----------------cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 123345555555432 34433 1223455556665332 22221111 224588999987553
Q ss_pred EEEeCCCC---EEEEEEe
Q 023085 149 VVCESWKF---RCRKYWL 163 (287)
Q Consensus 149 ~v~~~~~~---~l~~~~~ 163 (287)
.++.+..+ .|..+|+
T Consensus 222 l~~As~dd~~PviqlWDl 239 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDL 239 (1049)
T ss_pred eeeecCCCCCceeEeecc
Confidence 33333333 4556664
No 283
>KOG4328 consensus WD40 protein [Function unknown]
Probab=75.14 E-value=60 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=20.7
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
...++++.|....+..+.+..+....||+.
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R 353 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLR 353 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehh
Confidence 567788888777666666666666677754
No 284
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=74.65 E-value=77 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=30.3
Q ss_pred EccCCCEEEEEeCCCCEEEEEEecCCCC-cceeEEe-ccCC------CCCcceeeCCCC-CEEEEEec
Q 023085 141 LSRDEDYVVVCESWKFRCRKYWLKGERK-GKLETFA-ENLP------GAPDNINLAPDG-TFWIAIIK 199 (287)
Q Consensus 141 ~~~~~~~l~v~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~------~~~~~i~~d~~G-~lwv~~~~ 199 (287)
+-.|+.+|.-+....+.|.+||+..... .+.+... ...+ -...+++.|+.| .|+..|..
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 3356665555555466788888864311 1110000 0000 013568889988 47776664
No 285
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=73.65 E-value=13 Score=20.45 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=15.8
Q ss_pred CcEEEEecCCeEEEEE--CCceEE
Q 023085 5 GVIYTATRDGWIKRLQ--DGTWVN 26 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~--~~~~~~ 26 (287)
|.+|+++.+|.|+.+| +|+...
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEE
T ss_pred CEEEEeCCCCEEEEEECCCCCEEE
Confidence 4677888888888888 666543
No 286
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=73.59 E-value=95 Score=30.43 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCceEEEEECCC-CcEEEEEECCC-------Ccc--------ccceEE-EEEeCCEEEEEecCCCeEEEEeC
Q 023085 231 LGGGAHLIHVAED-GTIIRNLVDPT-------GQL--------MSFVTS-GLQVDNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 231 ~~~~~~v~~~~~~-g~~~~~~~~~~-------~~~--------~~~~~~-~~~~~g~l~i~~~~~~~i~~~~~ 286 (287)
.+..|.|..+|++ |+.++...... +.. .....+ +...++.+|++....+.+..||.
T Consensus 637 ~pp~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt~d~~l~A~D~ 709 (764)
T TIGR03074 637 APPWGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGATQDNYLRAYDL 709 (764)
T ss_pred CCCcEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeCCCCEEEEEEC
Confidence 3457899999976 78777765410 000 111223 34357888885445567777764
No 287
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=73.49 E-value=69 Score=28.76 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=43.7
Q ss_pred ccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCc--eEEEEeCCCCeeEEee--ccccccceEEEccCCCEEEEEe
Q 023085 77 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG--QLLKYDPSSNITTLVA--DGFYFANGVALSRDEDYVVVCE 152 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~l~v~~ 152 (287)
-++++++-+.-+|+.+.++ +| .||.+...-.++..+. .-..+.|.++|.++|+.+++.-
T Consensus 382 Witsla~i~~sdL~asGS~-----------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSW-----------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ceeeeEecccCceEEecCC-----------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 4667777766666665322 33 4555543322333332 2235678999999999888886
Q ss_pred CCCCEEEEEEec
Q 023085 153 SWKFRCRKYWLK 164 (287)
Q Consensus 153 ~~~~~l~~~~~~ 164 (287)
-...++-+|...
T Consensus 445 GkEhRlGRW~~~ 456 (479)
T KOG0299|consen 445 GKEHRLGRWWCL 456 (479)
T ss_pred ccccccceeeEe
Confidence 666777777653
No 288
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=73.06 E-value=78 Score=29.23 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=46.0
Q ss_pred cEEEEecCCeEEEEE-CCceEEEEeeC-CccccCeEECCCCcEEEEeCCCceEEEc-cCC-cE-EEeeecCCccccccce
Q 023085 6 VIYTATRDGWIKRLQ-DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VE-NFLSYVNGSKLRFAND 80 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~~~~~~~~~~~-~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~-~~~~~~~~~~~~~~~~ 80 (287)
.+.+.+.+|++..++ .++.+...+.. +... .-...+||.=.++....|+.++- ++| ++ ++... ...+.+
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~-----~~~v~c 150 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQN-----EESIRC 150 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhhc-----CceeEE
Confidence 466667888888887 66665543322 1111 22346778655555456777666 777 33 33211 235677
Q ss_pred EEEcCCC-cEEEE
Q 023085 81 VVEASDG-SLYFT 92 (287)
Q Consensus 81 l~~d~~g-~l~v~ 92 (287)
++.+++. .+.++
T Consensus 151 ~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 151 ARWAPNSNSIVFC 163 (737)
T ss_pred EEECCCCCceEEe
Confidence 8888764 45554
No 289
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=72.60 E-value=65 Score=28.06 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=30.8
Q ss_pred ceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCC----CeEEEEeC
Q 023085 234 GAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS----NFIGKVQL 286 (287)
Q Consensus 234 ~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~----~~i~~~~~ 286 (287)
...|+.++.+++....++..+-. ...+..+-...+.||+..... ..|.++++
T Consensus 259 ~~hly~~~~~~~~~~~lT~G~~~-V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 259 YRHLYLYDLDGGKPRQLTSGDWE-VTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SEEEEEEETTSSEEEESS-SSS--EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred CcEEEEEcccccceeccccCcee-ecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 45899999988887766642211 111223333357888887763 36666665
No 290
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.99 E-value=70 Score=28.22 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=19.1
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.....+.|+||++.|.-.. .+...+|+.+.
T Consensus 187 ~eV~DL~FS~dgk~lasig--~d~~~VW~~~~ 216 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIG--ADSARVWSVNT 216 (398)
T ss_pred CccccceeCCCCcEEEEec--CCceEEEEecc
Confidence 3457789999998544333 33666676653
No 291
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=71.87 E-value=61 Score=27.50 Aligned_cols=86 Identities=15% Similarity=0.266 Sum_probs=47.0
Q ss_pred CCCCCcEEEEe-cCCeEEEEE-CCceEEEEee---CCccccCeEECCCCcEEEE-eCCCceEEEc-cCC--cEEEeeecC
Q 023085 1 MDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---DSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFLSYVN 71 (287)
Q Consensus 1 ~d~~G~l~~~~-~~g~i~~~~-~~~~~~~~~~---~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~-~~g--~~~~~~~~~ 71 (287)
|+++|..++.. .+..|+-|+ .|.-+.+... .+... ++...+|++..++ ...+.+..+| ++| ...+...
T Consensus 55 F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h-- 131 (338)
T KOG0265|consen 55 FHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH-- 131 (338)
T ss_pred ECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhccc--
Confidence 45677655443 567788888 4333322222 22333 5666788875555 4456799999 788 3333211
Q ss_pred CccccccceEEEcCCCcEEEE
Q 023085 72 GSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 72 ~~~~~~~~~l~~d~~g~l~v~ 92 (287)
-..++.+....-|-..++
T Consensus 132 ---~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 132 ---TSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred ---cceeeecCccccCCeEEE
Confidence 134555554445554453
No 292
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=71.38 E-value=68 Score=27.77 Aligned_cols=117 Identities=11% Similarity=0.027 Sum_probs=60.0
Q ss_pred ccCCCEEEEEeCCCCEEEEEEecCCCCcceeEE---ecc--CCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHH
Q 023085 142 SRDEDYVVVCESWKFRCRKYWLKGERKGKLETF---AEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH 216 (287)
Q Consensus 142 ~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~---~~~--~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~ 216 (287)
+-||+.+.|.......-+...+++-+.+....+ .+. ....+.+|..-.+|++|+++.++.
T Consensus 140 ~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~--------------- 204 (442)
T PF15416_consen 140 SFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGG--------------- 204 (442)
T ss_pred CCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCC---------------
Confidence 346877777765443333333332222222111 111 222577777778999999998731
Q ss_pred HHHhCCccccccccCCCceEEEEEC-CCCc--EEEEEECC----CCccccceEEEEEe---CCEEEEEecCCCeEEEEeC
Q 023085 217 VLAAYPKLFSQFITLGGGAHLIHVA-EDGT--IIRNLVDP----TGQLMSFVTSGLQV---DNHLYVISLTSNFIGKVQL 286 (287)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~-~~g~--~~~~~~~~----~~~~~~~~~~~~~~---~g~l~i~~~~~~~i~~~~~ 286 (287)
....-.|+... |..+ .+..+... .|..-..-.++..| +|.+|++.....-|.|+.+
T Consensus 205 --------------~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~v 270 (442)
T PF15416_consen 205 --------------KASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTV 270 (442)
T ss_pred --------------CCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEc
Confidence 11122566664 3322 33333211 01101111233333 4889999988888888876
Q ss_pred C
Q 023085 287 S 287 (287)
Q Consensus 287 ~ 287 (287)
+
T Consensus 271 s 271 (442)
T PF15416_consen 271 S 271 (442)
T ss_pred c
Confidence 4
No 293
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.11 E-value=92 Score=29.43 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=28.0
Q ss_pred CCcEEEEecC-CeEEEEE---CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEE
Q 023085 4 NGVIYTATRD-GWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV 58 (287)
Q Consensus 4 ~G~l~~~~~~-g~i~~~~---~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~ 58 (287)
.|.+.++..- +-|..|+ ..+.........+.. .+.++.||+-.++....|..++
T Consensus 182 t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 182 TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred cceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEe
Confidence 4445555432 3344455 234444443444555 7888889965555445454443
No 294
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=70.43 E-value=67 Score=27.31 Aligned_cols=134 Identities=12% Similarity=0.096 Sum_probs=74.6
Q ss_pred CCcEEEEecCCeEEEEE-C-CceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccc
Q 023085 4 NGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~-~-~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~ 79 (287)
.+.|.+++++|.+..|+ . .+....... ..|....++..+-.+|.++..+.|.++| .++ ...+-.. ...+.
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~-~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth-----~~~i~ 98 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKH-GAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH-----DEGIR 98 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheec-CCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccC-----CCceE
Confidence 46889999999999998 2 222111111 1233255566667889988777788998 556 4443221 12334
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccccceE-EEccCCCEEEEEeCCCCEE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV-ALSRDEDYVVVCESWKFRC 158 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~l~v~~~~~~~l 158 (287)
+|.....-...|+ +..+..+-.+|+.. + ........++.+ +.+--++.|.|+.. +.++
T Consensus 99 ci~~~~~~~~vIs-----------------gsWD~~ik~wD~R~-~--~~~~~~d~~kkVy~~~v~g~~LvVg~~-~r~v 157 (323)
T KOG1036|consen 99 CIEYSYEVGCVIS-----------------GSWDKTIKFWDPRN-K--VVVGTFDQGKKVYCMDVSGNRLVVGTS-DRKV 157 (323)
T ss_pred EEEeeccCCeEEE-----------------cccCccEEEEeccc-c--ccccccccCceEEEEeccCCEEEEeec-CceE
Confidence 4544433344454 23356677788763 1 111222223332 34555666777653 5678
Q ss_pred EEEEec
Q 023085 159 RKYWLK 164 (287)
Q Consensus 159 ~~~~~~ 164 (287)
..||+.
T Consensus 158 ~iyDLR 163 (323)
T KOG1036|consen 158 LIYDLR 163 (323)
T ss_pred EEEEcc
Confidence 889875
No 295
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=70.33 E-value=67 Score=27.30 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=65.4
Q ss_pred CeEECCCC-cEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCC
Q 023085 37 GLTSTKEG-HLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 112 (287)
Q Consensus 37 ~i~~d~dg-~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~ 112 (287)
.+.+++.. .|.++.+.+.+..|+ +.- ...+... . .+.+-++.++.++|+. ..
T Consensus 18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~---~---plL~c~F~d~~~~~~G------------------~~ 73 (323)
T KOG1036|consen 18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG---A---PLLDCAFADESTIVTG------------------GL 73 (323)
T ss_pred eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC---C---ceeeeeccCCceEEEe------------------cc
Confidence 66777644 688888776677776 332 2222211 1 2234456656677774 34
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
++.|-++|..++....+.........+...+.. ...++.++..+|..||.-
T Consensus 74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPR 124 (323)
T ss_pred CceEEEEEecCCcceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecc
Confidence 578999998877766665555555666666433 377888888889888864
No 296
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=69.15 E-value=1.1e+02 Score=29.42 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=35.4
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec--cCCCCCcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.++++|.-+.+..+ .....|..|++..++. .+.|.. ...|.+--+..|+.| +|+++..
T Consensus 600 YDm~Vdp~~k~v~t~-cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSg-iY~atSc 660 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTV-CQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSG-IYLATSC 660 (1080)
T ss_pred EEeeeCCCcceEEEE-ecccceEEEeccccce--eeeecccccCCCceEEEEECCCc-cEEEEee
Confidence 456777877744444 4567799999875432 223322 122445557789998 6666654
No 297
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=68.75 E-value=84 Score=27.81 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=43.9
Q ss_pred cccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCC--------C-----C---eeEEee-cccccc
Q 023085 74 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--------S-----N---ITTLVA-DGFYFA 136 (287)
Q Consensus 74 ~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~-----~---~~~~~~-~~~~~~ 136 (287)
....+|.+.++++|.+..+... .+.++.+.+. + . .+.... .....+
T Consensus 64 H~~aVN~vRf~p~gelLASg~D-----------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di 126 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGD-----------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI 126 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCC-----------------CceEEEEEecCcCCccccchhhhCccceEEEEEecccccch
Confidence 3457888999999998886322 2334333322 1 1 111111 123456
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
..+++++++. ..++.+..+.++.+|+..
T Consensus 127 ydL~Ws~d~~-~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 127 YDLAWSPDSN-FLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred hhhhccCCCc-eeeeeeccceEEEEEecc
Confidence 7789999997 445555678888999754
No 298
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=68.71 E-value=66 Score=30.86 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=66.6
Q ss_pred CeEECCCCcEEEEe-CCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~-~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
++++||.-.+.++. ..+.|.+|+ ..| .........+. ...+-.+..|+.|. |++.+. .+
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~-eG~lIKv~lDPSgi-Y~atSc----------------sd 662 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH-EGDLIKVILDPSGI-YLATSC----------------SD 662 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccC-CCceEEEEECCCcc-EEEEee----------------cC
Confidence 77888877654442 235688888 777 44443321111 13455677887765 454332 24
Q ss_pred ceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 114 GQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 114 ~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.+|..+|-.+|+.. ..........|+.|.+|=+.|.-+ ++.++|+.|.+.
T Consensus 663 ktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv-sgDgCIFvW~lp 713 (1080)
T KOG1408|consen 663 KTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV-SGDGCIFVWKLP 713 (1080)
T ss_pred CceEEEEeccchhhhhhcCcchheeeeeecccchhheee-cCCceEEEEECc
Confidence 56888887777742 333445567789999998765443 467888888764
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=68.32 E-value=37 Score=29.73 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=26.6
Q ss_pred CeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 124 NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
+.-......+.....++++||.+.+..++.. .+|+.-..
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~y 180 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRY 180 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEec
Confidence 4444455566677889999999977777754 55666554
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=67.61 E-value=17 Score=19.49 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=20.5
Q ss_pred ccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 131 DGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 131 ~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
......+.++++|+++.+..+. ..+.|..||
T Consensus 9 ~h~~~i~~i~~~~~~~~~~s~~-~D~~i~vwd 39 (39)
T PF00400_consen 9 GHSSSINSIAWSPDGNFLASGS-SDGTIRVWD 39 (39)
T ss_dssp SSSSSEEEEEEETTSSEEEEEE-TTSEEEEEE
T ss_pred CCCCcEEEEEEecccccceeeC-CCCEEEEEC
Confidence 3344567888999987555554 556777764
No 301
>PLN02193 nitrile-specifier protein
Probab=67.17 E-value=1e+02 Score=28.17 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=28.8
Q ss_pred ceEEEEeCCCCeeEEeecccccc----ceEEEccCCCEEEEEeCC-----CCEEEEEEecC
Q 023085 114 GQLLKYDPSSNITTLVADGFYFA----NGVALSRDEDYVVVCESW-----KFRCRKYWLKG 165 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~l~v~~~~-----~~~l~~~~~~~ 165 (287)
..+++||+.+.++.........| .+.+...-++.||+..-. -+.+++||+..
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 35899999888877543211112 122222224458876421 14688998754
No 302
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=65.97 E-value=71 Score=25.94 Aligned_cols=59 Identities=12% Similarity=0.000 Sum_probs=32.6
Q ss_pred CeEECCCCcEEEEeCCCceEEEc--c------CC-cEE-Eee--e--cCCccccccceEEEcCCCcEEEEcCC
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS--E------DG-VEN-FLS--Y--VNGSKLRFANDVVEASDGSLYFTVSS 95 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~--~------~g-~~~-~~~--~--~~~~~~~~~~~l~~d~~g~l~v~~~~ 95 (287)
.+++.|.|.||.......-+++- + .+ ... ..+ . .......++++.+..+.|.|..+.+.
T Consensus 37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 67888999998775554333332 1 11 000 000 0 00112246778888888988887554
No 303
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=65.32 E-value=88 Score=26.80 Aligned_cols=117 Identities=14% Similarity=0.084 Sum_probs=64.5
Q ss_pred ccccceEE-EccCCCEEEEEe--CCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhh
Q 023085 133 FYFANGVA-LSRDEDYVVVCE--SWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN 209 (287)
Q Consensus 133 ~~~~~~i~-~~~~~~~l~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~ 209 (287)
...|+|++ ..|-...-+++- ...+.|...++...+.. ...++..-.+.+..+++..+|++-.+...
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---------- 201 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATAST---------- 201 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEecc----------
Confidence 45688887 444332233332 23356777776532221 11222211224667888899987666654
Q ss_pred cchhHHHHHHhCCccccccccCCCceEEEEE-C-CCCcEEEEEECCCCccccceEEEEEeCCEEEEEe-cCCCeEEEEeC
Q 023085 210 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHV-A-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LTSNFIGKVQL 286 (287)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~-~~~~~i~~~~~ 286 (287)
.|.+.|+ | .+|..+..+.. |..-..+.++.+..+..|++- -..+.|++|.|
T Consensus 202 ------------------------kGTLIRIFdt~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 202 ------------------------KGTLIRIFDTEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred ------------------------CcEEEEEEEcCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 3566654 5 45777777653 433456777777654444443 34667777765
No 304
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=65.14 E-value=88 Score=26.71 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=52.3
Q ss_pred CCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEE
Q 023085 42 KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119 (287)
Q Consensus 42 ~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 119 (287)
+...+|++++..|+.++| .+= ..++... ... .....++.+. -...|+++. ..++..+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~-lnt-~gyaygv~vs-Gn~aYVadl------------------ddgfLiv 153 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGF-LNT-DGYAYGVYVS-GNYAYVADL------------------DDGFLIV 153 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceecc-ccC-CceEEEEEec-CCEEEEeec------------------cCcEEEE
Confidence 345789999889999988 332 1111110 000 0122344444 234677642 2345555
Q ss_pred eCCCCeeEEeecccc----ccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 120 DPSSNITTLVADGFY----FANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
|..+-+--.+..... ..+.++++ |++-|++.. +++|...|+..+
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~-d~GL~ivDVSnp 201 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWR-DGGLTIVDVSNP 201 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEe-CCCeEEEEccCC
Confidence 543211111111122 22456666 788999975 467899998765
No 305
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=64.91 E-value=62 Score=27.92 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=36.1
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEec-cCCCCCcceeeCCCCCE
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTF 193 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l 193 (287)
.-..+.++|||+.+..+....-+|.++.+.+.+ . .... ... ...++++.+||+.
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-~---~~~~~pK~-~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-G---YLLPHPKT-NVKGYAFHPDGQF 147 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEeccce-e---EEeccccc-CceeEEECCCCce
Confidence 345677999998888888778889888875421 1 1111 122 2478999999864
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.78 E-value=1.3e+02 Score=28.48 Aligned_cols=131 Identities=10% Similarity=0.089 Sum_probs=68.7
Q ss_pred cCCeEEEEE-C-CceEEEEeeCCcccc-CeEECCCCcEEEEeCCCceEEEc-cCC--cEEEeeecCCccccccceEEEcC
Q 023085 12 RDGWIKRLQ-D-GTWVNWKFIDSQTLV-GLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS 85 (287)
Q Consensus 12 ~~g~i~~~~-~-~~~~~~~~~~~~~~~-~i~~d~dg~l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~ 85 (287)
.+|.|..|| + +....-.+....|+. +-.+.+.+-+.++...-.|.+++ .++ +..+... ...+.+++++|
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH-----~DyIR~iavHP 107 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH-----SDYIRSIAVHP 107 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc-----ccceeeeeecC
Confidence 788999998 3 332222233444432 23344555555554444566676 555 4444322 24677888888
Q ss_pred CCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 86 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 86 ~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
.--..++.+. ...-.+|.++.. ... ..+.....+...++|.|+....+.+.+....+-+|.+
T Consensus 108 t~P~vLtsSD---------------Dm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 108 TLPYVLTSSD---------------DMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred CCCeEEecCC---------------ccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 7665565322 111235555422 111 1223333455567777766556776666665555554
No 307
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=64.62 E-value=14 Score=35.92 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCCCcEEEEecCCeEEEEE-CCceEEEEe-eCCccccCeEECCCCcEEEEeCCCceEEEc
Q 023085 2 DKNGVIYTATRDGWIKRLQ-DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS 59 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~-~~~~~~~~~-~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~ 59 (287)
+.+|.|-+|+..|.|.-|+ .|....... ..+.|+.+|-+..||+-.+|+...-|+.++
T Consensus 586 t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~ 645 (794)
T PF08553_consen 586 TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID 645 (794)
T ss_pred cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence 4689999999999999998 443322222 235666589999999988888777777765
No 308
>PLN02193 nitrile-specifier protein
Probab=64.53 E-value=1.1e+02 Score=27.84 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=28.1
Q ss_pred ceEEEEeCCCCeeEEeeccc--ccc---ceEEEccCCCEEEEEeCC-----CCEEEEEEecC
Q 023085 114 GQLLKYDPSSNITTLVADGF--YFA---NGVALSRDEDYVVVCESW-----KFRCRKYWLKG 165 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~l~v~~~~-----~~~l~~~~~~~ 165 (287)
..+++||+.+.+++.+.... ..| +.++. .++.||+..-. -..+.+||+..
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~~~~iYv~GG~~~~~~~~~~~~yd~~t 303 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--DEENVYVFGGVSATARLKTLDSYNIVD 303 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--ECCEEEEECCCCCCCCcceEEEEECCC
Confidence 46999999988887764321 111 22222 23457876422 13467787654
No 309
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=63.81 E-value=1.4e+02 Score=28.44 Aligned_cols=26 Identities=4% Similarity=-0.050 Sum_probs=21.8
Q ss_pred EEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 140 ALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 140 ~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.++||.+.|+++.-+.++|+.+.+..
T Consensus 269 l~DpDt~llfLaGKG~~~l~~lE~~d 294 (1012)
T KOG1445|consen 269 LYDPDTRLLFLAGKGTNKLFMLEMQD 294 (1012)
T ss_pred eecCCCceEEEecCCcceEEEEEecC
Confidence 37899999999988888899988754
No 310
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=62.21 E-value=1.6e+02 Score=28.59 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=34.0
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
-.+.++||++.|.++= -++++..|-+++-++ ....|...+| ...|-+.+|+++-+++..
T Consensus 512 L~v~~Spdgk~LaVsL-LdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 512 LCVSVSPDGKLLAVSL-LDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSA 570 (888)
T ss_pred EEEEEcCCCcEEEEEe-ccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccC
Confidence 3456899999766664 467788887764221 1222222222 234555677777777754
No 311
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=61.84 E-value=1e+02 Score=26.33 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=29.4
Q ss_pred CCcEEEEecCCeEEEEE--CC-ceEEEE--eeCCccccCeEECCCC-cEEEEeCCCceEEEc
Q 023085 4 NGVIYTATRDGWIKRLQ--DG-TWVNWK--FIDSQTLVGLTSTKEG-HLIICDNANGLHKVS 59 (287)
Q Consensus 4 ~G~l~~~~~~g~i~~~~--~~-~~~~~~--~~~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~ 59 (287)
....|++.+..+|..++ +- +-+... ...+... +. +-.| ..||++...|++.+|
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv--~vsGn~aYVadlddgfLivd 154 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GV--YVSGNYAYVADLDDGFLIVD 154 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EE--EecCCEEEEeeccCcEEEEE
Confidence 34678888777888887 21 111111 1111111 22 2235 478888777888888
No 312
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=61.77 E-value=29 Score=21.21 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=28.7
Q ss_pred cceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEE
Q 023085 183 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV 251 (287)
Q Consensus 183 ~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~ 251 (287)
..+++.+||+|.++...... .......|.|++++|..=..|.
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~---------------------------~~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS---------------------------SGNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred EEEEECCCCcEEEEEEeecC---------------------------CCcccEEEEEECCCCCccCCcC
Confidence 45788899999998864100 0122347999999998766664
No 313
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=61.35 E-value=74 Score=33.65 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=30.2
Q ss_pred CCCCcEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc
Q 023085 2 DKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59 (287)
Q Consensus 2 d~~G~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~ 59 (287)
+++|..|-- ++++||+|+ ..+|.........+.+.+....||.||. -....+.-+.
T Consensus 371 ~~~ge~lRl-Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k~~~~l~nLS 428 (1774)
T PF11725_consen 371 DPDGEQLRL-HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA-KDDDTLVNLS 428 (1774)
T ss_pred CCCCCeEEe-ecCceeeeccccceecCCCCcccchhhhhcccCCCceEe-cCCCceeecC
Confidence 345555543 566788887 2333322222334454677778888887 2233344443
No 314
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.86 E-value=1.1e+02 Score=28.22 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=65.1
Q ss_pred CeEECCCCcEEEEeCC--CceEEEc-cCC--cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTSTKEGHLIICDNA--NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~--~gi~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
.|....+-+|.+.+.. ++|+.+| +.| ++.+..... . ....+..+.++.=..+ ...+.+.
T Consensus 338 ~mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i---~mv~~t~d~K~~Ql~~------------e~TlvGL 401 (644)
T KOG2395|consen 338 AMLHRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-I---NMVDITPDFKFAQLTS------------EQTLVGL 401 (644)
T ss_pred hhhhccccceEeeCCCCcCcceeeecccceeeeEeeccCC-c---ceeeccCCcchhcccc------------cccEEee
Confidence 4445556666666433 6899999 877 666643322 1 1111222212211110 0011233
Q ss_pred CCceEEEEeCCCCee--EEeeccccc-----cceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcc
Q 023085 112 PHGQLLKYDPSSNIT--TLVADGFYF-----ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDN 184 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~--~~~~~~~~~-----~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
...+|+|+||.-... ..+.+..++ -+-++-..+| ++.|+. ..+.|..|+.-+... +...+.+...+..
T Consensus 402 s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS-~~GdIRLYdri~~~A---KTAlPgLG~~I~h 476 (644)
T KOG2395|consen 402 SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGS-LKGDIRLYDRIGRRA---KTALPGLGDAIKH 476 (644)
T ss_pred cCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEee-cCCcEEeehhhhhhh---hhcccccCCceee
Confidence 467899999862211 111111111 1223333445 366665 456788888532211 1111112223455
Q ss_pred eeeCCCCCEEEEEe
Q 023085 185 INLAPDGTFWIAII 198 (287)
Q Consensus 185 i~~d~~G~lwv~~~ 198 (287)
+.+..+|..-+|+-
T Consensus 477 VdvtadGKwil~Tc 490 (644)
T KOG2395|consen 477 VDVTADGKWILATC 490 (644)
T ss_pred EEeeccCcEEEEec
Confidence 66667787666663
No 315
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=58.48 E-value=1.1e+02 Score=25.67 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=68.7
Q ss_pred CeEECCCCcEEEEeCCCc-eEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCC
Q 023085 37 GLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH 113 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~g-i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 113 (287)
.++..|.|++.++..... +.++. .++ ++.+... .| +.+.+-+++...+|++..+. .+.
T Consensus 66 svAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EG-HEnEVK~Vaws~sG~~LATC-----------------SRD 126 (312)
T KOG0645|consen 66 SVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EG-HENEVKCVAWSASGNYLATC-----------------SRD 126 (312)
T ss_pred eeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-ec-cccceeEEEEcCCCCEEEEe-----------------eCC
Confidence 788999999666644443 33333 455 6665432 22 23567889999999988764 234
Q ss_pred ceEEEEeCC-CCeeEE---eeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 114 GQLLKYDPS-SNITTL---VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 114 ~~v~~~~~~-~~~~~~---~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..||.+... .+++.- +....+....+.+.|-.. |.++.+..+.|..|+..
T Consensus 127 KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 127 KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDE 180 (312)
T ss_pred CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEeccCCeEEEEeec
Confidence 566655432 244433 334556677888998766 67777778888777754
No 316
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=57.82 E-value=2.1e+02 Score=28.62 Aligned_cols=135 Identities=16% Similarity=0.174 Sum_probs=73.0
Q ss_pred CCcEEEEeCC-CceEEEccCC-cEEEeeecCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEE
Q 023085 43 EGHLIICDNA-NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY 119 (287)
Q Consensus 43 dg~l~v~~~~-~gi~~~~~~g-~~~~~~~~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 119 (287)
.+.++-++.. ..+......+ .... .. ......+.++++|.- +.+|.+|.. .....+..+
T Consensus 448 ~~~i~~~d~~~~~i~~~~~~~~~~~~-~~--~~g~~~~~~lavD~~~~~~y~tDe~---------------~~~i~v~~~ 509 (877)
T KOG1215|consen 448 NNRIYWADLSDEKICRASQDGSSECE-LC--GDGLCIPEGLAVDWIGDNIYWTDEG---------------NCLIEVADL 509 (877)
T ss_pred CCEEEEEeccCCeEeeeccCCCccce-Ee--ccCccccCcEEEEeccCCceecccC---------------CceeEEEEc
Confidence 3456666544 3455554444 2221 01 111245678899964 578887644 111233333
Q ss_pred eCCCCeeEEeeccccccceEEEccCCCEEEEEeCCC-CEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEE
Q 023085 120 DPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-FRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAI 197 (287)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~ 197 (287)
+.. .....+...+..|..++++|-...+|+++... .++.+..+++. .........-..|+++++|- +..+|-+.
T Consensus 510 ~g~-~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~---~~~~l~~~~~~~p~glt~d~~~~~~yw~d 585 (877)
T KOG1215|consen 510 DGS-SRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS---ERAVLVTNGILWPNGLTIDYETDRLYWAD 585 (877)
T ss_pred cCC-ceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCC---CceEEEeCCccCCCcceEEeecceeEEEc
Confidence 322 12222334446788999999888899998763 34555554432 22222222234799999986 45666666
Q ss_pred ec
Q 023085 198 IK 199 (287)
Q Consensus 198 ~~ 199 (287)
..
T Consensus 586 ~~ 587 (877)
T KOG1215|consen 586 AK 587 (877)
T ss_pred cc
Confidence 54
No 317
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=56.22 E-value=1.3e+02 Score=25.72 Aligned_cols=115 Identities=17% Similarity=0.086 Sum_probs=63.9
Q ss_pred eCCccccCeEECC-CCcEEEE-eCCCceEEEc--cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCccee
Q 023085 30 IDSQTLVGLTSTK-EGHLIIC-DNANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 104 (287)
Q Consensus 30 ~~~~~~~~i~~d~-dg~l~v~-~~~~gi~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~ 104 (287)
++...++.|++.| ...+.++ .+.+.|.+++ .+| ..+-.. .....-+.+++...+|+..++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~---~~~~~PvL~v~WsddgskVf~------------ 89 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQ---QSHDGPVLDVCWSDDGSKVFS------------ 89 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhh---hccCCCeEEEEEccCCceEEe------------
Confidence 3333444888998 4456645 4444454444 345 322110 111123457788888875553
Q ss_pred eeeeccCCCceEEEEeCCCCeeEEeeccccccceEEEcc-CCCEEEEEeCCCCEEEEEEec
Q 023085 105 LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~l~v~~~~~~~l~~~~~~ 164 (287)
+..++.+-.+|..++++..+.........+.+-+ -.-.+.++.+....|.-||..
T Consensus 90 -----g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 90 -----GGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred -----eccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 2235667777888888887765544444454332 222366777777777777653
No 318
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=1.7e+02 Score=26.96 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=73.1
Q ss_pred cEEEEecCCeEEEEE--CCceEEEEeeCCccccCeEECCCCc-EEEEeCCCceEEEc-cCC--cEEEeeecCCccccccc
Q 023085 6 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFAN 79 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~--~~~~~~~~~~~~~~~~~i~~d~dg~-l~v~~~~~gi~~~~-~~g--~~~~~~~~~~~~~~~~~ 79 (287)
.|-+| .+..|+.|+ ++.+....+.....++.+...++|. |-|++..+.+..+| ... .+.+... ....+-
T Consensus 190 ~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~----h~~rvg 264 (484)
T KOG0305|consen 190 VLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS----HASRVG 264 (484)
T ss_pred eEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC----cCceeE
Confidence 34444 455788888 6776666555333333788899996 55666555577777 322 3333110 112333
Q ss_pred eEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe--eEEeeccccccceEEEccCCCEEEEEeCCCCE
Q 023085 80 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDEDYVVVCESWKFR 157 (287)
Q Consensus 80 ~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~ 157 (287)
.+ +-++.++.+ +...+.+..+|....+ ...+...-+...|+.+++|++. ..+.-..+.
T Consensus 265 ~l--aW~~~~lss-----------------Gsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~-lASGgnDN~ 324 (484)
T KOG0305|consen 265 SL--AWNSSVLSS-----------------GSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ-LASGGNDNV 324 (484)
T ss_pred EE--eccCceEEE-----------------ecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe-eccCCCccc
Confidence 33 334555554 2344556666654222 1112234456789999999973 333334567
Q ss_pred EEEEEe
Q 023085 158 CRKYWL 163 (287)
Q Consensus 158 l~~~~~ 163 (287)
+..||.
T Consensus 325 ~~Iwd~ 330 (484)
T KOG0305|consen 325 VFIWDG 330 (484)
T ss_pred eEeccC
Confidence 888886
No 319
>PLN02153 epithiospecifier protein
Probab=55.85 E-value=1.3e+02 Score=25.85 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=13.2
Q ss_pred ceEEEEeCCCCeeEEee
Q 023085 114 GQLLKYDPSSNITTLVA 130 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~ 130 (287)
..+++||+.+.+++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLT 117 (341)
T ss_pred CcEEEEECCCCEEEEec
Confidence 36899999888887654
No 320
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=55.48 E-value=1.2e+02 Score=25.27 Aligned_cols=82 Identities=26% Similarity=0.375 Sum_probs=45.3
Q ss_pred eEEEEeCCCCeeEEeecc-------ccccceEEE--ccC-CCE-EEEEeCCCCEEEEEEecCC---CCcc--eeEEeccC
Q 023085 115 QLLKYDPSSNITTLVADG-------FYFANGVAL--SRD-EDY-VVVCESWKFRCRKYWLKGE---RKGK--LETFAENL 178 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~-------~~~~~~i~~--~~~-~~~-l~v~~~~~~~l~~~~~~~~---~~~~--~~~~~~~~ 178 (287)
.+|.+||+.+.++.+... .+.+.|++. ++. |.+ ++|... .+-+..|.+-.. +.+. .+.|. .
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~-qG~~~Qy~l~d~gnGkv~~k~vR~fk--~ 203 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRR-QGDIAQYKLIDQGNGKVGTKLVRQFK--I 203 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecC-CCceeEEEEEecCCceEcceeeEeee--c
Confidence 577888887777666432 455678775 444 332 333333 355777776421 2221 22221 2
Q ss_pred CCCCcceeeC-CCCCEEEEEec
Q 023085 179 PGAPDNINLA-PDGTFWIAIIK 199 (287)
Q Consensus 179 ~~~~~~i~~d-~~G~lwv~~~~ 199 (287)
+.-..|+..| +-|.||++...
T Consensus 204 ~tQTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 204 PTQTEGMVADDETGFLYIAEED 225 (364)
T ss_pred CCcccceeeccccceEEEeecc
Confidence 2334566665 57999999865
No 321
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=54.08 E-value=1.4e+02 Score=25.48 Aligned_cols=103 Identities=14% Similarity=0.041 Sum_probs=57.8
Q ss_pred cCCCceEEEEeCCCCeeEEeecc-ccccceEEEccCCCEEEEEeCCCCEEEEEEecCC---------CCcceeEEecc--
Q 023085 110 GKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE---------RKGKLETFAEN-- 177 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~---------~~~~~~~~~~~-- 177 (287)
++..-.|...|.++|..+....+ -...-.+.++|..+.+..+.+..+.+..||+... ..++..+....
T Consensus 164 gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ 243 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNT 243 (397)
T ss_pred ecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccc
Confidence 33444566667777776654432 2334456788888766666555666777775321 00111111110
Q ss_pred -CCCCCcceeeCCCC-CEEEEEeccchhHHHHhhcch
Q 023085 178 -LPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSK 212 (287)
Q Consensus 178 -~~~~~~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~ 212 (287)
-.+-.++++..++| .+|.+....+.+.++...+..
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 11335778888887 588887776666666655443
No 322
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.98 E-value=1.5e+02 Score=25.98 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=13.8
Q ss_pred ceEEEEeCCCCeeEEee
Q 023085 114 GQLLKYDPSSNITTLVA 130 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~ 130 (287)
..|++||+.+++++.+.
T Consensus 189 ~~v~~YD~~t~~W~~~~ 205 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG 205 (376)
T ss_pred ceEEEEECCCCeeeECC
Confidence 46999999988887654
No 323
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.92 E-value=1.9e+02 Score=28.03 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=50.0
Q ss_pred CCceEEEEeCCC----CeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceee
Q 023085 112 PHGQLLKYDPSS----NITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINL 187 (287)
Q Consensus 112 ~~~~v~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (287)
..|.|..||... ..+..+...-...+.+.|.+-.-.+.++.+..+.|-+||+...+ ....+.. .......+.+
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~-nSESiRDV~f 184 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRS-NSESIRDVKF 184 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccc-cchhhhceee
Confidence 356677777642 11112223345567788887776788888888889999985321 1112221 2224666777
Q ss_pred CC-CCCEEEEEec
Q 023085 188 AP-DGTFWIAIIK 199 (287)
Q Consensus 188 d~-~G~lwv~~~~ 199 (287)
.+ .++.|++...
T Consensus 185 sp~~~~~F~s~~d 197 (839)
T KOG0269|consen 185 SPGYGNKFASIHD 197 (839)
T ss_pred ccCCCceEEEecC
Confidence 65 5677777765
No 324
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=53.27 E-value=1.4e+02 Score=25.41 Aligned_cols=52 Identities=12% Similarity=-0.072 Sum_probs=28.9
Q ss_pred ceEEEEeCCCCeeEEeeccc--cccceEEEccCCCEEEEEeCCC----CEEEEEEecCC
Q 023085 114 GQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK----FRCRKYWLKGE 166 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~l~v~~~~~----~~l~~~~~~~~ 166 (287)
..+++||+.+++++.+.... ......+...++ .||+..-.. ..+++||++..
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-EEEEEcCCCCccccceEEEecCCC
Confidence 46999999988887664211 111122222334 488875321 23578887543
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=52.99 E-value=2.2e+02 Score=27.36 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=50.3
Q ss_pred cEEEEecCCeEEEEE-CCceEEEEeeC---CccccCeEECCCCcEEEEeCCCceEEEc--cCC----cEEEeeecCCccc
Q 023085 6 VIYTATRDGWIKRLQ-DGTWVNWKFID---SQTLVGLTSTKEGHLIICDNANGLHKVS--EDG----VENFLSYVNGSKL 75 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~-~~~~~~~~~~~---~~~~~~i~~d~dg~l~v~~~~~gi~~~~--~~g----~~~~~~~~~~~~~ 75 (287)
.|.+|+..|.|+.|+ .+......... +... .+.+.++..+.++...+|.+.+- ..+ ...+.+.. ....
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d-~~~~ 124 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD-KSHK 124 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc-ccCC
Confidence 688888889999998 33333332221 1222 45566666666665555544333 222 11111111 1123
Q ss_pred cccceEEEcCCC-cEEEEcCCCC
Q 023085 76 RFANDVVEASDG-SLYFTVSSSK 97 (287)
Q Consensus 76 ~~~~~l~~d~~g-~l~v~~~~~~ 97 (287)
..++++..++++ .+|..|+.++
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred ceEEEEEecccccEEeecCCCce
Confidence 578899999998 6888776654
No 326
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=52.14 E-value=1e+02 Score=28.47 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=31.7
Q ss_pred ccccCeEECCCCcEEEEeCCCceEE-Ec-cCC-cEEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 33 QTLVGLTSTKEGHLIICDNANGLHK-VS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~gi~~-~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
.++ .+++.+||+.+++-...|.+| ++ .+. +.-+.. ..+....++...+||...++
T Consensus 292 ~in-~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk----SYFGGLLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SIN-EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK----SYFGGLLCVCWSPDGKYIVT 349 (636)
T ss_pred ccc-ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH----hhccceEEEEEcCCccEEEe
Confidence 345 788889998766654555433 33 222 111111 11334567889999997775
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.55 E-value=1.2e+02 Score=28.15 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=36.2
Q ss_pred CCceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.++.|..||...+ ++......-.|.-+++.|+|..+.|++ ..+.|.+||..
T Consensus 279 ~DgSiiLyD~~~~-~t~~~ka~~~P~~iaWHp~gai~~V~s-~qGelQ~FD~A 329 (545)
T PF11768_consen 279 EDGSIILYDTTRG-VTLLAKAEFIPTLIAWHPDGAIFVVGS-EQGELQCFDMA 329 (545)
T ss_pred cCCeEEEEEcCCC-eeeeeeecccceEEEEcCCCcEEEEEc-CCceEEEEEee
Confidence 4577888887644 433444445688899999998666655 56789999975
No 328
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=49.77 E-value=48 Score=18.90 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=19.0
Q ss_pred eEEEEEeCCEEEEEecCCCeEEEEeCC
Q 023085 261 VTSGLQVDNHLYVISLTSNFIGKVQLS 287 (287)
Q Consensus 261 ~~~~~~~~g~l~i~~~~~~~i~~~~~~ 287 (287)
...+...++.+|++... ..+.++|+|
T Consensus 4 a~~v~v~g~yaYva~~~-~Gl~IvDIS 29 (42)
T PF08309_consen 4 ARDVAVSGNYAYVADGN-NGLVIVDIS 29 (42)
T ss_pred EEEEEEECCEEEEEeCC-CCEEEEECC
Confidence 45677788999999543 557788875
No 329
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=49.13 E-value=64 Score=29.71 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=14.7
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEe
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWL 163 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~ 163 (287)
++|+|||+++.+... .+-+.+|..
T Consensus 338 vcWSPDGKyIvtGGE-DDLVtVwSf 361 (636)
T KOG2394|consen 338 VCWSPDGKYIVTGGE-DDLVTVWSF 361 (636)
T ss_pred EEEcCCccEEEecCC-cceEEEEEe
Confidence 579999996555432 344455554
No 330
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=48.49 E-value=2.4e+02 Score=26.61 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=38.3
Q ss_pred ccccceEEEccCCCEEEEEeC--CCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCC-CCCEEEEEec
Q 023085 133 FYFANGVALSRDEDYVVVCES--WKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIK 199 (287)
Q Consensus 133 ~~~~~~i~~~~~~~~l~v~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~lwv~~~~ 199 (287)
....+.+.+.-+|.+|-+... ....++.+.+.....+ ..|. ...|.+..+.+.+ .-.++|++..
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~-kskG~vq~v~FHPs~p~lfVaTq~ 587 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFR-KSKGLVQRVKFHPSKPYLFVATQR 587 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--Cchh-hcCCceeEEEecCCCceEEEEecc
Confidence 344567778888886655443 2356777776543211 2221 2334677777876 4579999876
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.22 E-value=1e+02 Score=28.65 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=37.8
Q ss_pred CcEEEEecCCeEEEEE-CCceEEEEeeCCccccCeEECCCCcEEEE-eCCCceEEEc
Q 023085 5 GVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS 59 (287)
Q Consensus 5 G~l~~~~~~g~i~~~~-~~~~~~~~~~~~~~~~~i~~d~dg~l~v~-~~~~gi~~~~ 59 (287)
..+.+|..+|.|.-|+ +...+......-.|. .++..|+|.+.+. +..+.+.++|
T Consensus 272 ~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 272 DKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred ceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence 3677888888888888 555555555555677 8888898875544 4434577777
No 332
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=48.09 E-value=1.6e+02 Score=24.34 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=43.8
Q ss_pred CCCCCcEEEEecCCeEEEEE----CCceEEEE--eeCCc-cccCeEECCCC-cEEEEe-CC--CceEEE--cc--CC-cE
Q 023085 1 MDKNGVIYTATRDGWIKRLQ----DGTWVNWK--FIDSQ-TLVGLTSTKEG-HLIICD-NA--NGLHKV--SE--DG-VE 64 (287)
Q Consensus 1 ~d~~G~l~~~~~~g~i~~~~----~~~~~~~~--~~~~~-~~~~i~~d~dg-~l~v~~-~~--~gi~~~--~~--~g-~~ 64 (287)
+|++|.+|+........+.- ++...... ..... ++..+.+.+|| |+.+.. .. ..|+.- .+ +| -.
T Consensus 73 ~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 73 WDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred ccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 47789999887433332222 33332221 11111 33378899999 554443 11 223332 22 23 12
Q ss_pred EEee-ecCC-ccccccceEEEcCCCcEEEE
Q 023085 65 NFLS-YVNG-SKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 65 ~~~~-~~~~-~~~~~~~~l~~d~~g~l~v~ 92 (287)
.+.. .... .....+.++....+++|.+.
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEE
Confidence 2211 1111 11345667888888888774
No 333
>PLN02153 epithiospecifier protein
Probab=47.49 E-value=1.9e+02 Score=24.99 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=49.7
Q ss_pred eEEEEE--CCceEEEEeeCCcccc---CeE-ECCCCcEEEEeCC------CceEEEc-cCC-cEEEeeecC-Ccc-cccc
Q 023085 15 WIKRLQ--DGTWVNWKFIDSQTLV---GLT-STKEGHLIICDNA------NGLHKVS-EDG-VENFLSYVN-GSK-LRFA 78 (287)
Q Consensus 15 ~i~~~~--~~~~~~~~~~~~~~~~---~i~-~d~dg~l~v~~~~------~gi~~~~-~~g-~~~~~~~~~-~~~-~~~~ 78 (287)
.+++|| ..++.........|.. +.+ ..-+++||+.-.. ..++++| .+. ++.+..... ..+ ...-
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 577888 4555543322111210 221 2225678876321 2478888 555 665532111 111 1111
Q ss_pred ceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 79 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 79 ~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
..+ +.-++.||+.....+.+.. .....-..|+.||+++.++..+.
T Consensus 131 ~~~-~~~~~~iyv~GG~~~~~~~------~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 131 HSM-ASDENHVYVFGGVSKGGLM------KTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred eEE-EEECCEEEEECCccCCCcc------CCCcccceEEEEECCCCeEeeCC
Confidence 222 3335778885221000000 00001135889999988887654
No 334
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=47.20 E-value=2.1e+02 Score=25.59 Aligned_cols=64 Identities=9% Similarity=-0.007 Sum_probs=37.1
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.++|.+....||.+...+++|..+|.... ..+.......-.+....+++.+-+..-+++.+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S 292 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGS 292 (422)
T ss_pred ceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEecc
Confidence 44667777766668888777888999987532 22222222111223456777775555555544
No 335
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=46.55 E-value=2.2e+02 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=37.8
Q ss_pred ceEEEc-cCC-cEEEeeecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee
Q 023085 54 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 54 gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 130 (287)
-+++|+ .+. ++.+... ..++..+-..+++-+.|.+|+-. +||....-. -+ -...-+|.++..+.++..+.
T Consensus 99 dLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fG--GEfaSPnq~---qF-~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFG--GEFASPNQE---QF-HHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEec--cccCCcchh---hh-hhhhheeeeeeccchheeec
Confidence 378888 555 6555332 23334455667777788999842 222111100 00 01234788888877777664
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=46.10 E-value=1.1e+02 Score=21.87 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=33.9
Q ss_pred CCCC--cEEEEecCCeEEEEECCceEEEEeeCCccccCeEECCCCcEEEEeCCCceEEEc
Q 023085 2 DKNG--VIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS 59 (287)
Q Consensus 2 d~~G--~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~i~~d~dg~l~v~~~~~gi~~~~ 59 (287)
|.|| .|.+|+.+..|..|+..+..........+. .+..-..++...+...+.|-.|+
T Consensus 11 d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~-~L~~~~~~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 11 DGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVT-SLCSLGGGRFAYALANGTVGVYD 69 (111)
T ss_pred CCCCcceEEEecCCcEEEEEeCCcEEEEEecccceE-EEEEcCCCEEEEEecCCEEEEEe
Confidence 4554 699999999999998444433333333344 55555556655555444455554
No 337
>PRK10115 protease 2; Provisional
Probab=45.95 E-value=2.9e+02 Score=26.79 Aligned_cols=74 Identities=3% Similarity=-0.111 Sum_probs=42.0
Q ss_pred ccceEEEcCCCcEEEE--cCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-cceEEEccCCCEEEEEeC
Q 023085 77 FANDVVEASDGSLYFT--VSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCES 153 (287)
Q Consensus 77 ~~~~l~~d~~g~l~v~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~v~~~ 153 (287)
.+..+.++++|++.+. |.. +.....|+.++..+|+.. ...+.. ...+++.+|++.+|++..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~--------------G~E~~~l~v~d~~tg~~l--~~~i~~~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFL--------------SRRQYGIRFRNLETGNWY--PELLDNVEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCC--------------CcEEEEEEEEECCCCCCC--CccccCcceEEEEeeCCCEEEEEEe
Confidence 3455677778774331 211 222345888888777521 111111 145789999988877643
Q ss_pred C-----CCEEEEEEecCC
Q 023085 154 W-----KFRCRKYWLKGE 166 (287)
Q Consensus 154 ~-----~~~l~~~~~~~~ 166 (287)
. ...++++++.++
T Consensus 192 ~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred cCCCCCCCEEEEEECCCC
Confidence 2 246888887643
No 338
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=44.48 E-value=2.9e+02 Score=26.31 Aligned_cols=103 Identities=9% Similarity=-0.082 Sum_probs=55.1
Q ss_pred cEEEEeCCCceEEEc-cCC-cEEEee--ecCCccccccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEe
Q 023085 45 HLIICDNANGLHKVS-EDG-VENFLS--YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 120 (287)
Q Consensus 45 ~l~v~~~~~gi~~~~-~~g-~~~~~~--~~~~~~~~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 120 (287)
-|++++..++|..++ ... .+.-.. .......+.+.+++..+....+|+- .++..+..+|
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa-----------------sGDsT~r~Wd 128 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA-----------------SGDSTIRPWD 128 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc-----------------cCCceeeeee
Confidence 377887667777777 332 221000 0111223445556555522445542 2344566666
Q ss_pred CCCCeeEEe---eccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 121 PSSNITTLV---ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
.++.+..-. .........++|.+.+..++++...++.+..||..
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 554443221 22223345678888887788887777778888764
No 339
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.22 E-value=1.3e+02 Score=26.25 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=34.3
Q ss_pred CceEEEEeCCCCee-EEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 113 HGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 113 ~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
++.+-.+|..++.. -.+........+++|+|.|++|.-+ ..+..|.+||+..
T Consensus 313 DktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDktlrvwdl~~ 365 (406)
T KOG0295|consen 313 DKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKTLRVWDLKN 365 (406)
T ss_pred cceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCcEEEEEecc
Confidence 34555566666653 2233455678899999999865544 3467899999864
No 340
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=42.64 E-value=1.2e+02 Score=25.28 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=34.1
Q ss_pred CCCcEEEEecCCeEEEEECCceEEE--EeeCCccccCe----EEC-CCCcEEEEeCCCceEEE
Q 023085 3 KNGVIYTATRDGWIKRLQDGTWVNW--KFIDSQTLVGL----TST-KEGHLIICDNANGLHKV 58 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~i----~~d-~dg~l~v~~~~~gi~~~ 58 (287)
+-..|.+||..|.|+.++...+... ...+.-|. .| .+| -|.|+.|++..+.|+.+
T Consensus 194 a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv-~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 194 AVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV-FISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred CcceEEEEecCCeEEEECchhheeEEEEecCCCce-EEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3347899999999999994433322 22333333 22 234 67788888866556654
No 341
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=41.85 E-value=2.4e+02 Score=24.68 Aligned_cols=51 Identities=8% Similarity=-0.039 Sum_probs=29.9
Q ss_pred CceEEEEeCCCCeeE-EeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 113 HGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
+..|..+|-++++.. .+.......-++.|+ +. +.|+.+....+.+++++.+
T Consensus 256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred CceEEEEeccCCchhhHHhhhcceeEEEEEe--CC-EEEEecCCceeEEEeccCc
Confidence 456777776667632 223333444555565 32 5566666778888887654
No 342
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=41.72 E-value=59 Score=17.58 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=12.6
Q ss_pred ceEEEccCCCEEEEEeCCC
Q 023085 137 NGVALSRDEDYVVVCESWK 155 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~ 155 (287)
...+++|||+.|+++....
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 3456899998887776543
No 343
>PRK13616 lipoprotein LpqB; Provisional
Probab=41.42 E-value=3.2e+02 Score=25.98 Aligned_cols=106 Identities=16% Similarity=0.062 Sum_probs=48.6
Q ss_pred CeEECCCCc-EEEEeCCCceEE---Ec-cCCcEEEee-ecCCcccc-ccceEEEcCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 37 GLTSTKEGH-LIICDNANGLHK---VS-EDGVENFLS-YVNGSKLR-FANDVVEASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 37 ~i~~d~dg~-l~v~~~~~gi~~---~~-~~g~~~~~~-~~~~~~~~-~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+.+.+||. +.+.. ...|+. .. ..|...+.. ......+. .+..+....+++|.+...
T Consensus 452 sl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~--------------- 515 (591)
T PRK13616 452 ELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS--------------- 515 (591)
T ss_pred eEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec---------------
Confidence 788889994 54443 233444 22 334222211 10111111 235566667777776421
Q ss_pred cCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEE
Q 023085 110 GKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~ 162 (287)
.....++++..+ |..... ...-......++......+|+++.. .++.+.
T Consensus 516 -~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~--g~~~l~ 565 (591)
T PRK13616 516 -DPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPSTVYVTDAR--AVLQLP 565 (591)
T ss_pred -CCCCceEEEecC-CccccccCCCCccCceEEEecCCceEEEEcCC--ceEEec
Confidence 123458888776 443322 2110111122233333468888753 355544
No 344
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=38.90 E-value=2.8e+02 Score=24.57 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=58.1
Q ss_pred CCccccCeEECCCC-cEEEEeCCCceEEEc-c--C-C-cEEEeeecCCccccccceEEEcCCCcEEEE-cCCCCCCCcce
Q 023085 31 DSQTLVGLTSTKEG-HLIICDNANGLHKVS-E--D-G-VENFLSYVNGSKLRFANDVVEASDGSLYFT-VSSSKYLPHEY 103 (287)
Q Consensus 31 ~~~~~~~i~~d~dg-~l~v~~~~~gi~~~~-~--~-g-~~~~~~~~~~~~~~~~~~l~~d~~g~l~v~-~~~~~~~~~~~ 103 (287)
+..+. .+.+..+. .+.+++..+-++.++ - . + .+++. .....+.++++.+|+...++ |..
T Consensus 107 ~~~~~-ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-----GhvSml~dVavS~D~~~IitaDRD-------- 172 (390)
T KOG3914|consen 107 PKRPT-AISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-----GHVSMLLDVAVSPDDQFIITADRD-------- 172 (390)
T ss_pred ccCcc-eeeeeeccceEEEEeecCCceeeeeecccccCcchhh-----hhhhhhheeeecCCCCEEEEecCC--------
Confidence 34555 66665444 566666544455554 1 1 3 22221 12345678889988876664 311
Q ss_pred eeeeeccCCCceEEEEeCCCCeeEEe-eccccccceEEEccCCCEEEEEeCCCCEEEEEEecCC
Q 023085 104 CLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKGE 166 (287)
Q Consensus 104 ~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~ 166 (287)
..-.|-+|. .+-.+..+ .....+...++..+ +. +.++..+.++|+.||+...
T Consensus 173 --------EkIRvs~yp-a~f~IesfclGH~eFVS~isl~~-~~-~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 173 --------EKIRVSRYP-ATFVIESFCLGHKEFVSTISLTD-NY-LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred --------ceEEEEecC-cccchhhhccccHhheeeeeecc-Cc-eeeecCCCCcEEEEecccC
Confidence 122333442 11122222 22345566776553 33 5677777888999998643
No 345
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.60 E-value=1.2e+02 Score=30.62 Aligned_cols=132 Identities=9% Similarity=0.092 Sum_probs=65.7
Q ss_pred cCCeEEEEE-CCc--eEEEEeeCC-ccccCeEECCCC--cEEEEeCCCc---eEEEc-c--CC-cEEEeeecCCcccccc
Q 023085 12 RDGWIKRLQ-DGT--WVNWKFIDS-QTLVGLTSTKEG--HLIICDNANG---LHKVS-E--DG-VENFLSYVNGSKLRFA 78 (287)
Q Consensus 12 ~~g~i~~~~-~~~--~~~~~~~~~-~~~~~i~~d~dg--~l~v~~~~~g---i~~~~-~--~g-~~~~~~~~~~~~~~~~ 78 (287)
..|+...|| ..+ +..+....+ ...++++..|++ +|++++...+ |...| + +- ...+.. ....+
T Consensus 182 ~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~-----H~~Gi 256 (1049)
T KOG0307|consen 182 PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG-----HQRGI 256 (1049)
T ss_pred CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc-----cccce
Confidence 445556666 222 222222222 223378888887 5888865543 22232 1 11 222211 11234
Q ss_pred ceEEEcCCC-cEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCC
Q 023085 79 NDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKF 156 (287)
Q Consensus 79 ~~l~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~ 156 (287)
.+|..-..+ ++.++ ...++.+.+++++++++.. +.....+-..+.|.|..-.++-+.+..+
T Consensus 257 lslsWc~~D~~lllS-----------------sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 257 LSLSWCPQDPRLLLS-----------------SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred eeeccCCCCchhhhc-----------------ccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecc
Confidence 444444444 55554 2346789999998887543 2222223334556665544454445566
Q ss_pred EEEEEEecC
Q 023085 157 RCRKYWLKG 165 (287)
Q Consensus 157 ~l~~~~~~~ 165 (287)
+|-.|.+.+
T Consensus 320 kI~I~sl~~ 328 (1049)
T KOG0307|consen 320 KISIYSLQG 328 (1049)
T ss_pred ceeeeeeec
Confidence 777776653
No 346
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=38.26 E-value=4e+02 Score=26.17 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=38.4
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
..+.++|+++|..||-... ..-+.++.+++++ +.|.+...+....+.+.+|+.++.....
T Consensus 253 ~V~~L~fS~~G~~LlSGG~-E~VLv~Wq~~T~~----kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGR-EGVLVLWQLETGK----KQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ccceeEEecCCceEeeccc-ceEEEEEeecCCC----cccccccCCeeEEEEEcCCCCeEEEEec
Confidence 4578899999987666542 3445666654432 3444445555677888888887766644
No 347
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=37.72 E-value=2.6e+02 Score=23.84 Aligned_cols=81 Identities=7% Similarity=0.047 Sum_probs=37.4
Q ss_pred ceEEEEeCCCCee----EEeecccccc---ceEEEccCCCEEEEEeCC-----CCEEEEEEecCCCCcceeEEeccCCCC
Q 023085 114 GQLLKYDPSSNIT----TLVADGFYFA---NGVALSRDEDYVVVCESW-----KFRCRKYWLKGERKGKLETFAENLPGA 181 (287)
Q Consensus 114 ~~v~~~~~~~~~~----~~~~~~~~~~---~~i~~~~~~~~l~v~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
..++++|+.+.+. ..+ ..+..+ ...+. -++ .||+..-. .+.+++||+...+-.....+. ....
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~-~~lp~~~~~~~~~~-~~~-~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~~r 162 (323)
T TIGR03548 88 SSVYRITLDESKEELICETI-GNLPFTFENGSACY-KDG-TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFP--GEPR 162 (323)
T ss_pred eeEEEEEEcCCceeeeeeEc-CCCCcCccCceEEE-ECC-EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCC--CCCC
Confidence 4688888876654 222 222111 22222 234 48876421 246888987543222111110 0111
Q ss_pred CcceeeCCCCCEEEEEec
Q 023085 182 PDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 182 ~~~i~~d~~G~lwv~~~~ 199 (287)
....+.--+++||+....
T Consensus 163 ~~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGG 180 (323)
T ss_pred CcceEEEECCEEEEEcCC
Confidence 222333346789987653
No 348
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.76 E-value=3.4e+02 Score=24.92 Aligned_cols=39 Identities=10% Similarity=0.101 Sum_probs=23.6
Q ss_pred eEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeC
Q 023085 115 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 115 ~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
.+|.+++...+++.+.......+-.++.++.+.+.++.+
T Consensus 135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 577777765555544444445566677777775555554
No 349
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=35.95 E-value=2.8e+02 Score=23.83 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=18.7
Q ss_pred EEEEECCCCcEEEEEECCCCccc----cc----eEEEEEeCCEEEEEec
Q 023085 236 HLIHVAEDGTIIRNLVDPTGQLM----SF----VTSGLQVDNHLYVISL 276 (287)
Q Consensus 236 ~v~~~~~~g~~~~~~~~~~~~~~----~~----~~~~~~~~g~l~i~~~ 276 (287)
++..++.+|+.+..+........ .. ...+...++.+|++..
T Consensus 116 ~l~~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (333)
T PF13970_consen 116 KLFLFNSQGEVLKKIDLEEEDLEFEPSEFPSFSNSPIFIKDNKLYFSQP 164 (333)
T ss_dssp EEEEE-TT--EEEEEE---TTS-------BTTTTB--EEETTEEEEE--
T ss_pred eEEEEcCCCeEEEEEecccCcccccccccccccccceEeCCCeEEEeee
Confidence 89999999998887754322100 01 1233445777787764
No 350
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=35.49 E-value=2.8e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.436 Sum_probs=20.4
Q ss_pred CeEECCCCcEEEEeCC-CceEEEc-cCC
Q 023085 37 GLTSTKEGHLIICDNA-NGLHKVS-EDG 62 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~-~gi~~~~-~~g 62 (287)
++..+++|.++|+... +.|++++ .+|
T Consensus 148 sV~~~~~G~yLiS~R~~~~i~~I~~~tG 175 (299)
T PF14269_consen 148 SVDKDDDGDYLISSRNTSTIYKIDPSTG 175 (299)
T ss_pred eeeecCCccEEEEecccCEEEEEECCCC
Confidence 5677889998888644 5799999 777
No 351
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=4.2e+02 Score=24.68 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred CceEEEEeCCCCeeEEee-ccccccceEEEccCCCEEE-EEeCCCCEEEEEEecCCCCcceeEEeccCCCCCc-ceeeCC
Q 023085 113 HGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVV-VCESWKFRCRKYWLKGERKGKLETFAENLPGAPD-NINLAP 189 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~l~-v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~d~ 189 (287)
...|+.++.+ |+-..+. ..-...+.+.|++.++..- +...+..++..|++... + .. ..+..|. .+.+.+
T Consensus 250 Eq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~--v~-df~egpRN~~~fnp 321 (566)
T KOG2315|consen 250 EQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----P--VF-DFPEGPRNTAFFNP 321 (566)
T ss_pred cceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----E--eE-eCCCCCccceEECC
Confidence 3468888876 4433332 2234457889999887544 44456678888886542 1 11 2222354 466788
Q ss_pred CCCE-EEEEec
Q 023085 190 DGTF-WIAIIK 199 (287)
Q Consensus 190 ~G~l-wv~~~~ 199 (287)
.|+| -++...
T Consensus 322 ~g~ii~lAGFG 332 (566)
T KOG2315|consen 322 HGNIILLAGFG 332 (566)
T ss_pred CCCEEEEeecC
Confidence 8874 455554
No 352
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=31.33 E-value=94 Score=16.86 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.7
Q ss_pred CCCceEEEEECCCCcE
Q 023085 231 LGGGAHLIHVAEDGTI 246 (287)
Q Consensus 231 ~~~~~~v~~~~~~g~~ 246 (287)
....+.|+|+++++..
T Consensus 13 ~~~~GTvf~~~~~g~~ 28 (34)
T TIGR03803 13 ASGFGTLYRLSTAGGT 28 (34)
T ss_pred CCCceeEEEEcCCCCe
Confidence 4556899999998876
No 353
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.13 E-value=3.8e+02 Score=23.81 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=58.5
Q ss_pred ccceEEEccC-CCEEEEEeCCCCEEEEEEecCCCCcceeEEec--cCCCCCcceeeCCCCC-EEEEEeccchhHHHHhhc
Q 023085 135 FANGVALSRD-EDYVVVCESWKFRCRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNS 210 (287)
Q Consensus 135 ~~~~i~~~~~-~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~d~~G~-lwv~~~~~~~~~~~~~~~ 210 (287)
++.++.|.+. -..-+++.+.-+.+..||... + .+++.. ........+..+++|+ ||++...
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~---q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~----------- 268 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH---Q-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTK----------- 268 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcc---c-CcceeEeccccCcceeeeecCCCcEEEEeccc-----------
Confidence 3456677654 134666666678899999642 2 222221 1223356677888886 5555554
Q ss_pred chhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEECCCCccccceEEEEEeCCEEEEEecCCCeEE
Q 023085 211 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 282 (287)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~i~~~~~~~i~ 282 (287)
+.+..||-+++.+..... .|. ...++++..+++.=++++.+=++.+
T Consensus 269 ------------------------g~l~~FD~r~~kl~g~~~-kg~-tGsirsih~hp~~~~las~GLDRyv 314 (412)
T KOG3881|consen 269 ------------------------GQLAKFDLRGGKLLGCGL-KGI-TGSIRSIHCHPTHPVLASCGLDRYV 314 (412)
T ss_pred ------------------------chhheecccCceeecccc-CCc-cCCcceEEEcCCCceEEeeccceeE
Confidence 467778866544433221 111 2346666666654455555544333
No 354
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=31.11 E-value=4.2e+02 Score=24.32 Aligned_cols=32 Identities=13% Similarity=-0.048 Sum_probs=23.8
Q ss_pred cccceEEEccCCCEEEEEeCCCCEEEEEEecCCC
Q 023085 134 YFANGVALSRDEDYVVVCESWKFRCRKYWLKGER 167 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~ 167 (287)
.....+..+|||+.+|+-+ ++.+..+++++..
T Consensus 221 ~~v~qllL~Pdg~~LYv~~--g~~~~v~~L~~r~ 252 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRT--GSELVVALLDKRS 252 (733)
T ss_pred cchHhhEECCCCCEEEEec--CCeEEEEeecccc
Confidence 3445677899999999986 4678888876543
No 355
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=30.91 E-value=3.5e+02 Score=23.28 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCeeEEeec
Q 023085 114 GQLLKYDPSSNITTLVAD 131 (287)
Q Consensus 114 ~~v~~~~~~~~~~~~~~~ 131 (287)
..+++||+.+++++.+..
T Consensus 168 ~~v~~YDp~t~~W~~~~~ 185 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGE 185 (346)
T ss_pred ceEEEEECCCCceeECcc
Confidence 469999999888887643
No 356
>PF13964 Kelch_6: Kelch motif
Probab=30.82 E-value=1.1e+02 Score=17.56 Aligned_cols=18 Identities=22% Similarity=0.459 Sum_probs=14.3
Q ss_pred CceEEEEeCCCCeeEEee
Q 023085 113 HGQLLKYDPSSNITTLVA 130 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~ 130 (287)
...+++||+.+++++.+.
T Consensus 27 ~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLP 44 (50)
T ss_pred cccEEEEcCCCCcEEECC
Confidence 357999999988887664
No 357
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=30.04 E-value=2.1e+02 Score=20.52 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=16.4
Q ss_pred CCCcceeeCCCCCEEEEEec
Q 023085 180 GAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 180 ~~~~~i~~d~~G~lwv~~~~ 199 (287)
+.|-.+.+..+|++|+++..
T Consensus 82 ~ep~~l~~l~dgri~~ts~~ 101 (123)
T PF11763_consen 82 SEPLDLHTLSDGRIWFTSNE 101 (123)
T ss_pred CCcEEEEEecCCcEEEEccc
Confidence 35777888899999999964
No 358
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.09 E-value=3.3e+02 Score=22.53 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.4
Q ss_pred CceEEEEeCCCCeeEE-eeccccccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 113 HGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
...++.+|..+|++.+ +-......|.+.|..+.. +.++.+....+..||-.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCR 131 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcc
Confidence 4568888888888654 445567889999987665 77777777888888854
No 359
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=29.08 E-value=3.3e+02 Score=22.42 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=57.1
Q ss_pred CeEEC-CCCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccc-cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccC
Q 023085 37 GLTST-KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL-RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGK 111 (287)
Q Consensus 37 ~i~~d-~dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~-~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~ 111 (287)
+|.+- .+|+||......+||.++ .+| .+.+-.......+ ....++-+.+- .+|-+. .
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv------------------s 92 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV------------------S 92 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE------------------c
Confidence 55554 477999887667899999 788 6666211111111 12233333332 455552 1
Q ss_pred CCceEEEEeCCCCeeEEeeccccc----------c--ceEEEc-----cC-CCEEEEEeCCCCEEEEEE
Q 023085 112 PHGQLLKYDPSSNITTLVADGFYF----------A--NGVALS-----RD-EDYVVVCESWKFRCRKYW 162 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~~~~~~~~~~----------~--~~i~~~-----~~-~~~l~v~~~~~~~l~~~~ 162 (287)
..+.=+|++++++.+......+.+ | -+.++. +. ...||-.+...+.|++-.
T Consensus 93 ~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 93 NTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred cCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 245677888888875433222211 1 122332 12 345777776666666653
No 360
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=28.22 E-value=5e+02 Score=24.25 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=40.1
Q ss_pred cCCCceEEEEeCCCCeeEEeeccccccce---EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCccee
Q 023085 110 GKPHGQLLKYDPSSNITTLVADGFYFANG---VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNIN 186 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (287)
++..|.|+.|+...|+++........+.. +....+-.-+|-+. ...++..++.... .-...+- .....+..++
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~~~~~~--~~~~~~~-~~~~~~~sl~ 151 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG-ADLKVVYILEKEK--VIIRIWK-EQKPLVSSLC 151 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC-CceeEEEEecccc--eeeeeec-cCCCccceEE
Confidence 34456677777776777766543222222 22222222233222 1223333433221 1111121 2223467888
Q ss_pred eCCCCCEEEEEec
Q 023085 187 LAPDGTFWIAIIK 199 (287)
Q Consensus 187 ~d~~G~lwv~~~~ 199 (287)
+.+||.+-+....
T Consensus 152 is~D~~~l~~as~ 164 (541)
T KOG4547|consen 152 ISPDGKILLTASR 164 (541)
T ss_pred EcCCCCEEEeccc
Confidence 9889877665544
No 361
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=27.78 E-value=3.6e+02 Score=22.47 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=44.4
Q ss_pred cccCeEECC-CCcEEEEeCCCceEEEc-cCC-cEEEeeecCCccccccceEEE-cCCCcEEEEcCCCCCCCcceeeeeec
Q 023085 34 TLVGLTSTK-EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE-ASDGSLYFTVSSSKYLPHEYCLDILE 109 (287)
Q Consensus 34 ~~~~i~~d~-dg~l~v~~~~~gi~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~-d~~g~l~v~~~~~~~~~~~~~~~~~~ 109 (287)
.+ .+.+|| .|.++++.....++..| ++| ++....... ..+..++- .+++.++-
T Consensus 117 IN-am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt----DYvH~vv~R~~~~qils------------------ 173 (325)
T KOG0649|consen 117 IN-AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT----DYVHSVVGRNANGQILS------------------ 173 (325)
T ss_pred cc-eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc----ceeeeeeecccCcceee------------------
Confidence 35 788895 55788776445689999 999 555433211 24455544 44566554
Q ss_pred cCCCceEEEEeCCCCeeEEe
Q 023085 110 GKPHGQLLKYDPSSNITTLV 129 (287)
Q Consensus 110 ~~~~~~v~~~~~~~~~~~~~ 129 (287)
+..+|.+-.+|.++++-..+
T Consensus 174 G~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 174 GAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred cCCCccEEEEeccccceeEE
Confidence 34567777777776654333
No 362
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=27.41 E-value=3.8e+02 Score=22.64 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=30.5
Q ss_pred CeEECCCCcEEEEeCCCceEEEc-cCCcEEE-eee-cCCccccccceEEEcCCCcEEEE
Q 023085 37 GLTSTKEGHLIICDNANGLHKVS-EDGVENF-LSY-VNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 37 ~i~~d~dg~l~v~~~~~gi~~~~-~~g~~~~-~~~-~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
-++...+|++.+.....-|-... +|..... ... ....+.+.=..++..+|+++.+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~ 60 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAY 60 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEE
Confidence 35677899988776554444444 5553222 221 11111223346788888887764
No 363
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=27.32 E-value=5.3e+02 Score=24.28 Aligned_cols=63 Identities=22% Similarity=0.175 Sum_probs=38.7
Q ss_pred cccceEEEccCCCEEEEEeCC--CCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEec
Q 023085 134 YFANGVALSRDEDYVVVCESW--KFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK 199 (287)
Q Consensus 134 ~~~~~i~~~~~~~~l~v~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~ 199 (287)
...|.+-++|.|+.+.++.-. ++.+.-||.+- ................+.-|+.|+..+++..
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~---a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY---ADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecch---hhhhhccCccccccccceECCCCCEEEEeee
Confidence 456788899999988887744 56677887642 1111111111113456778888887777754
No 364
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=26.76 E-value=4.2e+02 Score=23.69 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=35.0
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEee-ccccccceEEEccCCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDED 146 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~ 146 (287)
..+.+++..+++.+.++ +...+.+..+|...|++.... .....++|++++|-++
T Consensus 124 ~diydL~Ws~d~~~l~s-----------------~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 124 DDIYDLAWSPDSNFLVS-----------------GSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred cchhhhhccCCCceeee-----------------eeccceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 35666766667666554 233556777777777765543 3456788888888765
No 365
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.75 E-value=7.3e+02 Score=25.66 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=106.3
Q ss_pred cEEEEecCCeEEEEE---C--CceEEEE---ee-----CCccccCeEEC---CCCcEEEEeCCCceEEEccCCcEEEeee
Q 023085 6 VIYTATRDGWIKRLQ---D--GTWVNWK---FI-----DSQTLVGLTST---KEGHLIICDNANGLHKVSEDGVENFLSY 69 (287)
Q Consensus 6 ~l~~~~~~g~i~~~~---~--~~~~~~~---~~-----~~~~~~~i~~d---~dg~l~v~~~~~gi~~~~~~g~~~~~~~ 69 (287)
-+.+++.+|-|..|+ + +..+... .. ..... ++.+| ..|.|+++..-+-|.+.|.+.-....+
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d- 1202 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD- 1202 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC-CeeeehhhhCCeEEecCCeeEEEEEecccceeEee-
Confidence 456777888777776 3 2222221 11 11223 56666 356677664222344444333111111
Q ss_pred cCCccccccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe---eEEeecccc---ccceEEEc
Q 023085 70 VNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFY---FANGVALS 142 (287)
Q Consensus 70 ~~~~~~~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~---~~~~i~~~ 142 (287)
..-.....++.+..+.. |++.++. -.+|.|-.||..... ......... ....+.+-
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AG-----------------faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAG-----------------FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred cccCCCccceeecccccCCceEEEe-----------------ecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 11112345666666643 6777752 234556656532111 111111111 12344444
Q ss_pred cCCCEEEEEeCCCCEEEEEEecCCCCcceeEE-eccCCC-CCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHHHHh
Q 023085 143 RDEDYVVVCESWKFRCRKYWLKGERKGKLETF-AENLPG-APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 220 (287)
Q Consensus 143 ~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (287)
+.|-.=.|+.+..+.|..+|+......+.... .....| ....+.+.++-.+..+...
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~--------------------- 1324 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA--------------------- 1324 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc---------------------
Confidence 44433345556678899999864322222111 111112 2455666666555554442
Q ss_pred CCccccccccCCCceEEEEECCCCcEEEEEECCC---CccccceEEEEEeCC-EEEEEecCCCeEEEE
Q 023085 221 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT---GQLMSFVTSGLQVDN-HLYVISLTSNFIGKV 284 (287)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~g-~l~i~~~~~~~i~~~ 284 (287)
+.+..++..|..+..+.... ++....++++.++.. -+..++...++|.+|
T Consensus 1325 --------------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1325 --------------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred --------------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 36667777777666554211 222334577777753 344555666666665
No 366
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=26.03 E-value=4.5e+02 Score=22.99 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCceEEEEeCCCCee-EEeeccccccceEEEcc--CCCEEEEEeCCCCEEEEEEec
Q 023085 112 PHGQLLKYDPSSNIT-TLVADGFYFANGVALSR--DEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 112 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~~~l~v~~~~~~~l~~~~~~ 164 (287)
..+.+..||+.+++. ..+-......|++.|.. ....++.+ +..+.|..||+.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISC-SSDGTVRLWDIR 102 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEe-ccCCeEEEEEee
Confidence 356777888776543 22222334457777654 23335554 446789999875
No 367
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=25.88 E-value=3.6e+02 Score=22.79 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=20.3
Q ss_pred ceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 137 NGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 137 ~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
..++++||+..|..+++ .+.|..||+-+
T Consensus 47 Rkl~WSpD~tlLa~a~S-~G~i~vfdl~g 74 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAES-TGTIRVFDLMG 74 (282)
T ss_pred eEEEECCCCcEEEEEcC-CCeEEEEeccc
Confidence 46889999986666664 56788888653
No 368
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=25.58 E-value=3.7e+02 Score=21.95 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=42.1
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeCC
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCESW 154 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~~ 154 (287)
..+.++++|+.|+|.++. ........||...++ +..+.+......-+.|+|...+|.. .+.
T Consensus 232 savaav~vdpsgrll~sg-----------------~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt-~sy 293 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASG-----------------HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT-CSY 293 (350)
T ss_pred ceeEEEEECCCcceeeec-----------------cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEE-ecc
Confidence 457789999999998862 223344445555444 3333333344455668876654444 345
Q ss_pred CCEEEEEEecC
Q 023085 155 KFRCRKYWLKG 165 (287)
Q Consensus 155 ~~~l~~~~~~~ 165 (287)
..+|..-|+.+
T Consensus 294 d~~ikltdlqg 304 (350)
T KOG0641|consen 294 DMKIKLTDLQG 304 (350)
T ss_pred cceEEEeeccc
Confidence 56677666654
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=1.4e+02 Score=27.70 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCCcEEEEecCCeEEEEE-CCceEEEEee-CCccccCeEECCCCcEEEEeCCCceEEEc
Q 023085 3 KNGVIYTATRDGWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVS 59 (287)
Q Consensus 3 ~~G~l~~~~~~g~i~~~~-~~~~~~~~~~-~~~~~~~i~~d~dg~l~v~~~~~gi~~~~ 59 (287)
.+|.|-+|+..|.|.-|+ .+.......| -+.++..+.+..||.-.+|+...-|+.++
T Consensus 440 ~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~ 498 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLID 498 (644)
T ss_pred CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEE
Confidence 578899999889888888 3433333222 24444477788999888887666676665
No 370
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=25.57 E-value=4.1e+02 Score=22.35 Aligned_cols=29 Identities=14% Similarity=0.302 Sum_probs=21.3
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEec
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLK 164 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~ 164 (287)
...|++.+-.-..||+++. .-.||+|..+
T Consensus 206 QTEG~VaDdEtG~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 206 QTEGMVADDETGFLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred cccceeeccccceEEEeec-cceeeecccC
Confidence 5578877655556999986 4579999865
No 371
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=24.89 E-value=4.8e+02 Score=24.52 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred cceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEe--eccccccceEEEcc-CCCEEEEEeCC
Q 023085 78 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSR-DEDYVVVCESW 154 (287)
Q Consensus 78 ~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~i~~~~-~~~~l~v~~~~ 154 (287)
++++....+|.+.++.+. +-.+..+|+-..+.... .......-.+-|-| -++.+.++...
T Consensus 53 VN~LeWn~dG~lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 53 VNCLEWNADGELLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred ecceeecCCCCEEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccC
Q ss_pred CCEEEEEEec
Q 023085 155 KFRCRKYWLK 164 (287)
Q Consensus 155 ~~~l~~~~~~ 164 (287)
...|..||++
T Consensus 116 Dk~i~lfdl~ 125 (758)
T KOG1310|consen 116 DKLIKLFDLD 125 (758)
T ss_pred cceEEEEecc
No 372
>PRK13614 lipoprotein LpqB; Provisional
Probab=24.78 E-value=6.1e+02 Score=24.08 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=44.7
Q ss_pred CCCCCcEEEEecCC--eEEEEE-CCc--eE-----EEE--eeCCccccCeEECCCC-cEEEEe--CCCc-eEE--E--cc
Q 023085 1 MDKNGVIYTATRDG--WIKRLQ-DGT--WV-----NWK--FIDSQTLVGLTSTKEG-HLIICD--NANG-LHK--V--SE 60 (287)
Q Consensus 1 ~d~~G~l~~~~~~g--~i~~~~-~~~--~~-----~~~--~~~~~~~~~i~~d~dg-~l~v~~--~~~g-i~~--~--~~ 60 (287)
+|.+|.+|....+. .|.++. ++. .. ... -..+..+..+.+.+|| |+.+.. .++. |+. + +.
T Consensus 390 ~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~ 469 (573)
T PRK13614 390 FSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE 469 (573)
T ss_pred ccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC
Confidence 57889999887644 888877 332 11 111 1112223377888999 544332 2221 222 2 23
Q ss_pred CCc-EEEeeecCCccccccceEEEcCCCcEEEE
Q 023085 61 DGV-ENFLSYVNGSKLRFANDVVEASDGSLYFT 92 (287)
Q Consensus 61 ~g~-~~~~~~~~~~~~~~~~~l~~d~~g~l~v~ 92 (287)
+|. ..+.....-.....+.++..-.+++|.+.
T Consensus 470 ~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~ 502 (573)
T PRK13614 470 DGTPRELTAPITLAADSDADTGAWVGDSTVVVT 502 (573)
T ss_pred CCCeEEccCceecccCCCcceeEEcCCCEEEEE
Confidence 342 23321111011235566666667777664
No 373
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=24.16 E-value=4.9e+02 Score=24.33 Aligned_cols=105 Identities=8% Similarity=0.004 Sum_probs=0.0
Q ss_pred EEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccC----CCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhH
Q 023085 139 VALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENL----PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI 214 (287)
Q Consensus 139 i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~ 214 (287)
+..+.+...+|......++|++.|+.-+++-..-...... ...-.---..+.++|-=-+..
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~--------------- 537 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDY--------------- 537 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeeccc---------------
Q ss_pred HHHHHhCCccccccccCCCceEEEEECCC--CcEEEEEECCCCccccceEEEEEe-CCEEEEEecCCC
Q 023085 215 KHVLAAYPKLFSQFITLGGGAHLIHVAED--GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSN 279 (287)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~-~g~l~i~~~~~~ 279 (287)
+|+|+||. |+.+......+=..-+..++...- .|.+-+++..|+
T Consensus 538 ---------------------svFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~kGD 584 (776)
T COG5167 538 ---------------------SVFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGD 584 (776)
T ss_pred ---------------------ceEEecccccCCceeeeeehhccccccccccccccCceEEEecCCCc
No 374
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=23.50 E-value=9.8e+02 Score=26.08 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=31.4
Q ss_pred cccceEEEcCCCcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCeeEEeeccccc-cceEEEccCCCEEEE
Q 023085 76 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVV 150 (287)
Q Consensus 76 ~~~~~l~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~l~v 150 (287)
..+.+|..+++|..|=- ..+.||.+++....++........ .+-+...-||+ +|.
T Consensus 363 A~LTgv~~~~~ge~lRl-------------------Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~-lYA 418 (1774)
T PF11725_consen 363 AHLTGVHTDPDGEQLRL-------------------HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGK-LYA 418 (1774)
T ss_pred HHhhccccCCCCCeEEe-------------------ecCceeeeccccceecCCCCcccchhhhhcccCCCc-eEe
Confidence 45667777777765552 346799999887766642221111 12334445665 665
No 375
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.38 E-value=6.9e+02 Score=24.21 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=33.4
Q ss_pred cceEEEccCCCEEEEEeCCCCEEEEEEecCCCCc--ceeEEeccCCCCCccee-eC-CCCCEEEEEec
Q 023085 136 ANGVALSRDEDYVVVCESWKFRCRKYWLKGERKG--KLETFAENLPGAPDNIN-LA-PDGTFWIAIIK 199 (287)
Q Consensus 136 ~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~-~d-~~G~lwv~~~~ 199 (287)
...++|++++..+|..++. ++|....++...+. +...+. ..+..|. +| .++.|.|++..
T Consensus 127 VTal~Ws~~~~k~ysGD~~-Gkv~~~~L~s~~~~~~~~q~il----~~ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDSQ-GKVVLTELDSRQAFLSKSQEIL----SEDSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred EEEEEecccccEEeecCCC-ceEEEEEechhhhhccccceee----ccCcceEEeecccceehHhhhh
Confidence 4568899999999999875 56665555431111 111111 1123333 34 47778887754
No 376
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=22.70 E-value=4.4e+02 Score=23.02 Aligned_cols=52 Identities=17% Similarity=0.031 Sum_probs=35.4
Q ss_pred CceEEEEeCCCCeeEEeeccccccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 113 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 113 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.+.||.+|.+..++..+...........++|..-.|.++. ++.+|+.+.+.+
T Consensus 341 PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vct-g~srLY~W~psg 392 (447)
T KOG4497|consen 341 PNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCT-GKSRLYFWAPSG 392 (447)
T ss_pred CceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEc-CCceEEEEcCCC
Confidence 4679999987555554444444456677888776677775 567888887654
No 377
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=22.49 E-value=6.7e+02 Score=24.62 Aligned_cols=74 Identities=15% Similarity=0.035 Sum_probs=45.3
Q ss_pred cccceEEEcCC-CcEEEEcCCCCCCCcceeeeeeccCCCceEEEEeCCCCe-eEEeeccccccceEEEccCCCEEEEEeC
Q 023085 76 RFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVADGFYFANGVALSRDEDYVVVCES 153 (287)
Q Consensus 76 ~~~~~l~~d~~-g~l~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~v~~~ 153 (287)
+.++.+.+.+- -++.++ +..++.|-.||.+... ...+.........+.|+|.....|++-.
T Consensus 134 Rs~~~ldfh~tep~iliS-----------------GSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 134 RSANKLDFHSTEPNILIS-----------------GSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred cceeeeeeccCCccEEEe-----------------cCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 45666666653 466665 3346778788875433 2222233344566788876555666666
Q ss_pred CCCEEEEEEecCC
Q 023085 154 WKFRCRKYWLKGE 166 (287)
Q Consensus 154 ~~~~l~~~~~~~~ 166 (287)
.++-|..||+..+
T Consensus 197 dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 197 DSGYLQLWDLRQP 209 (839)
T ss_pred CCceEEEeeccCc
Confidence 7788889998543
No 378
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.87 E-value=6.3e+02 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=18.5
Q ss_pred ccccCeEECCCCcEEEEeCCCc-eEEEc-cCC
Q 023085 33 QTLVGLTSTKEGHLIICDNANG-LHKVS-EDG 62 (287)
Q Consensus 33 ~~~~~i~~d~dg~l~v~~~~~g-i~~~~-~~g 62 (287)
.|+ -+....+|+..+.....| +..+| .++
T Consensus 131 GPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~ 161 (545)
T KOG1272|consen 131 GPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTK 161 (545)
T ss_pred CCe-eeeecCCccEEEecCCccceeeeecccc
Confidence 455 677778997554443434 77787 666
No 379
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=21.26 E-value=6.5e+02 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=19.0
Q ss_pred ccceEEEccCCCEEEEEeCCCCEEEEEEecC
Q 023085 135 FANGVALSRDEDYVVVCESWKFRCRKYWLKG 165 (287)
Q Consensus 135 ~~~~i~~~~~~~~l~v~~~~~~~l~~~~~~~ 165 (287)
.+.-++++|.+..+.+-+ .+++.++.+++
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~--~gki~~~~l~N 387 (733)
T COG4590 359 APQLVAMSPNQAYLLSED--QGKIRLAQLEN 387 (733)
T ss_pred CcceeeeCcccchheeec--CCceEEEEecC
Confidence 455567888887665554 56677777654
No 380
>PRK13613 lipoprotein LpqB; Provisional
Probab=20.29 E-value=7.6e+02 Score=23.58 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCCCcEEEEec--C-CeEEEE-E-CCceEEEEee--CCccccCeEECCCC-cEEE-EeCC-Cc---eEEEc--cCCcEE
Q 023085 1 MDKNGVIYTATR--D-GWIKRL-Q-DGTWVNWKFI--DSQTLVGLTSTKEG-HLII-CDNA-NG---LHKVS--EDGVEN 65 (287)
Q Consensus 1 ~d~~G~l~~~~~--~-g~i~~~-~-~~~~~~~~~~--~~~~~~~i~~d~dg-~l~v-~~~~-~g---i~~~~--~~g~~~ 65 (287)
+|.+|.+|..+. + .++.+. . +|+......+ .+.++..+.+.+|| |+.+ .+.. .+ |-.+. .+|...
T Consensus 416 ~d~~g~vWtvd~~~~~~~vl~v~~~~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~ 495 (599)
T PRK13613 416 WDGRGDLWVVDRDPADPRLLWLLQGDGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVS 495 (599)
T ss_pred CcCCCCEEEecCCCCCceEEEEEcCCCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEE
Confidence 477899998853 2 234544 3 5555333221 12233378888999 6543 3321 12 22222 334222
Q ss_pred Eee-ecCCccccccceEEEcCCCcEEE
Q 023085 66 FLS-YVNGSKLRFANDVVEASDGSLYF 91 (287)
Q Consensus 66 ~~~-~~~~~~~~~~~~l~~d~~g~l~v 91 (287)
+.. ......+..+.+++.-.+++|.+
T Consensus 496 l~~~~~l~~~l~~v~~~~W~~~~sL~V 522 (599)
T PRK13613 496 VEEFRSLAPELEDVTDMSWAGDSQLVV 522 (599)
T ss_pred eeccEEeccCCCccceeEEcCCCEEEE
Confidence 221 11122233467777777778777
No 381
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=2.7e+02 Score=24.85 Aligned_cols=69 Identities=7% Similarity=-0.030 Sum_probs=0.0
Q ss_pred eEEEccCCCEEEEEeCCCCEEEEEEecCCCCcceeEEeccCCCCCcceeeCCCCCEEEEEeccchhHHHHhhcchhHHHH
Q 023085 138 GVALSRDEDYVVVCESWKFRCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 217 (287)
Q Consensus 138 ~i~~~~~~~~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~ 217 (287)
+++++|.++.|....+.++.|-.+|+... .....+.....-+.-....|+.+.||-+...
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~~~~wSC~wDlde~h~IYaGl~n------------------ 257 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAYNQIWSCCWDLDERHVIYAGLQN------------------ 257 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccc--eeeeheeccCCceeeeeccCCcceeEEeccC------------------
Q ss_pred HHhCCccccccccCCCceEEEEECCC
Q 023085 218 LAAYPKLFSQFITLGGGAHLIHVAED 243 (287)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (287)
|.|+.||..
T Consensus 258 -----------------G~VlvyD~R 266 (463)
T KOG1645|consen 258 -----------------GMVLVYDMR 266 (463)
T ss_pred -----------------ceEEEEEcc
No 382
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=20.10 E-value=9.1e+02 Score=24.39 Aligned_cols=52 Identities=8% Similarity=0.127 Sum_probs=26.3
Q ss_pred EEEecCCeEEEEE-CCceEEEE-eeCCccccCeEECCCCc-EEEEeCC------CceEEEc
Q 023085 8 YTATRDGWIKRLQ-DGTWVNWK-FIDSQTLVGLTSTKEGH-LIICDNA------NGLHKVS 59 (287)
Q Consensus 8 ~~~~~~g~i~~~~-~~~~~~~~-~~~~~~~~~i~~d~dg~-l~v~~~~------~gi~~~~ 59 (287)
|+....++|...| +|...+.. .....|.....+.|||+ |-.++.. ..|++.+
T Consensus 323 fv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~ 383 (912)
T TIGR02171 323 FRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRN 383 (912)
T ss_pred EEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEe
Confidence 3333345677777 55433333 22233332567789995 4442211 2388877
Done!