BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023087
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A Photosynthetic
           Reaction Center And Core Antenna System From
           Cyanobacteria
 pdb|3PCQ|B Chain B, Femtosecond X-Ray Protein Nanocrystallography
 pdb|4FE1|B Chain B, Improving The Accuracy Of Macromolecular Structure
           Refinement At 7 A Resolution
          Length = 740

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1   MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSIN 44
            ++   G L+YGF +  +  +  ASTA   Y  V + G+L +IN
Sbjct: 465 FIQAAHGKLLYGFDTLLSNPDSIASTAWPNYGNVWLPGWLDAIN 508


>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An
           Exoribonuclease Involved In Structured Rna Processing
          Length = 375

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 86  LFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPL 145
           L A ++ ++    D     +++ +D PG R +         A  S I  ++    ++A L
Sbjct: 275 LLALVEKAQTLPEDALPQPMLNLMDMPGYRKAFK-------AIKSLITDVSETHKISAEL 327

Query: 146 LWDKKMVHTQFNWHWYHVP 164
           L  ++ ++   NWHW   P
Sbjct: 328 LASRRQINQLLNWHWKLKP 346


>pdb|2IEW|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IEW|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           From S. Cerevisiae
 pdb|2IF8|A Chain A, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
 pdb|2IF8|B Chain B, Crystal Structure Of Inositol Phosphate Multikinase Ipk2
           In Complex With Adp And Mn2+ From S. Cerevisiae
          Length = 363

 Score = 27.7 bits (60), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 212 EYQLSHPDEEGMPIDTLYATSRERFLVSSQVTL---NSHLTEFKDHELVKT 259
           EY     D + + I+ LY  SR    VS  + L   N HL++ + H+L KT
Sbjct: 185 EYYEEEADSDYIFINKLYGRSRTDQNVSDAIELYFNNPHLSDARKHQLKKT 235


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,868,704
Number of Sequences: 62578
Number of extensions: 298850
Number of successful extensions: 667
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 6
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)