BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023087
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38899|ORC2_ARATH Origin recognition complex subunit 2 OS=Arabidopsis thaliana
GN=ORC2 PE=1 SV=1
Length = 363
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/286 (73%), Positives = 247/286 (86%), Gaps = 1/286 (0%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
LRCGFGLLMYGFGSKKAL+EDFAS +LT+YSVVVINGYL S+N+KQV++ LAE+L K
Sbjct: 79 LRCGFGLLMYGFGSKKALVEDFASASLTDYSVVVINGYLPSVNLKQVLLALAELLSELLK 138
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
KRK+ SG+L + Q+ F SRSMDD+ +FL G + + D F+CVV+HNIDGP LRD E+QQ
Sbjct: 139 CKRKS-SGSLSKGQETFPSRSMDDILSFLHGPQSGDKDCFICVVVHNIDGPALRDPESQQ 197
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
L R++ CSHIR++ASIDHVNAPLLWDKKMVH QFNW W+HVPTFAPY VEG+FFPL+LA
Sbjct: 198 TLARLSSCSHIRLVASIDHVNAPLLWDKKMVHKQFNWLWHHVPTFAPYNVEGVFFPLVLA 257
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQ 241
GS+AQTAKTAAIVLQSLTPN Q+VFKILAEYQLSHPDE+GMP D LY+ SRERF VSSQ
Sbjct: 258 QGSTAQTAKTAAIVLQSLTPNGQNVFKILAEYQLSHPDEDGMPTDDLYSASRERFFVSSQ 317
Query: 242 VTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287
VTLNSHLTEFKDHELVKT+R+SDGQ+C IPL S+A+ +LL ++NQ
Sbjct: 318 VTLNSHLTEFKDHELVKTKRNSDGQECLNIPLTSDAIRQLLLDLNQ 363
>sp|Q13416|ORC2_HUMAN Origin recognition complex subunit 2 OS=Homo sapiens GN=ORC2 PE=1
SV=2
Length = 577
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 161/286 (56%), Gaps = 21/286 (7%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L GF +++YG GSK+ LLE F +T L + VVING+ I++K V+ ++ E + +
Sbjct: 305 LHLGFNIVLYGLGSKRDLLERFRTTMLQDSIHVVINGFFPGISVKSVLNSITEEVLDHMG 364
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
+ RS+ D ++ +++ + ++IHN+D LR ++QQ
Sbjct: 365 T-----------------FRSILDQLDWIVNKFKEDSSLELFLLIHNLDSQMLRGEKSQQ 407
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
+G+++ +I +IASIDH+NAPL+WD + FNW WY T++PY E + +L
Sbjct: 408 IIGQLSSLHNIYLIASIDHLNAPLMWDHAK-QSLFNWLWYETTTYSPYTEETSYENSLLV 466
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
S + + VL+SLTPNA+ +F++L +YQL + D G+ Y RE FLV
Sbjct: 467 KQSGSLPLSSLTHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLSFQDFYQQCREAFLV 526
Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
+S +TL + LTEF+DH+L++T++ +DG + IP+ + L L +
Sbjct: 527 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGTLTDFLEK 572
>sp|Q75PQ8|ORC2_RAT Origin recognition complex subunit 2 OS=Rattus norvegicus GN=Orc2
PE=2 SV=1
Length = 576
Score = 174 bits (441), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 160/284 (56%), Gaps = 21/284 (7%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
LR GF +++YG GSK+ LLE F +T L + VVING+ I++K ++ ++ E + +
Sbjct: 303 LRLGFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGFFPGISVKSILNSITEDVLSHMG 362
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
+ Q + R + F + S L+ + ++IHN+D LR +QQ
Sbjct: 363 T-----------FQSVLDQRDWI-MNRFKEDSSLE-----LFLLIHNLDSQMLRGDNSQQ 405
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
LG+++ ++ +IASIDH+NAPL+WD + +NW WY T++PY E + +L
Sbjct: 406 ILGQLSSLRNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSPYTEETSYENSLLV 464
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSH---PDEEGMPIDTLYATSRERFLV 238
S + + VL+SLTPNA+ +F++L +YQL + P G+ Y RE FLV
Sbjct: 465 KQSGSLPLSSLIHVLRSLTPNARGIFRLLMKYQLDNQDCPSYIGLSFQDFYQQCREAFLV 524
Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLL 282
+S +TL + LTEF+DH+L++T++ +DG + IP+ S L L
Sbjct: 525 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDSGTLADFL 568
>sp|Q60862|ORC2_MOUSE Origin recognition complex subunit 2 OS=Mus musculus GN=Orc2 PE=1
SV=1
Length = 576
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/286 (33%), Positives = 160/286 (55%), Gaps = 21/286 (7%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L GF +++YG GSK+ LLE F +T L + VVINGY +++K ++ ++ E + +
Sbjct: 304 LHLGFNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGYFPGVSVKSILNSITEDVLSHVG 363
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
+ Q + R + F + S L+ + ++IHN+D LR +QQ
Sbjct: 364 T-----------FQSVLDQRDWI-INRFKEDSSLE-----LFLLIHNLDSQMLRGDNSQQ 406
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
LG+++ ++ +IASIDH+NAPL+WD + +NW WY T++PY E + +L
Sbjct: 407 ILGQLSSLHNVYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSPYTEETSYENSLLV 465
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
S + + VL+SLTPNA+ +F++L ++QL + D G+ Y RE FLV
Sbjct: 466 KQSGSLPLSSLIHVLRSLTPNARGIFRLLMKFQLDNQDSPSYIGLSFQDFYQQCREAFLV 525
Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
+S +TL + LTEF+DH+L++T++ +DG + IP+ S L L +
Sbjct: 526 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDSGILADFLEK 571
>sp|A6QNM3|ORC2_BOVIN Origin recognition complex subunit 2 OS=Bos taurus GN=ORC2 PE=2
SV=2
Length = 577
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 158/284 (55%), Gaps = 22/284 (7%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L GF +++YG GSK+ LLE F +T L + +VING+ I++K V+ ++ EVL
Sbjct: 306 LHLGFNIVLYGLGSKRDLLERFRTTMLQDCIHIVINGFFPGISVKSVLNSVTEVL----- 360
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
RS+ D ++ +++ + ++IHN+D LR ++QQ
Sbjct: 361 -------------DHVGTFRSVLDQLEWITNKFKEDSSLELFLLIHNLDSQMLRGDKSQQ 407
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
+G+++ +I +IASIDH+NAPL+WD + +NW WY T++ Y E + +L
Sbjct: 408 IIGQLSSLRNIYLIASIDHLNAPLMWDHAK-QSLYNWLWYETTTYSHYTEETSYENSLLV 466
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEE---GMPIDTLYATSRERFLV 238
S + + VL+SLTPNA+ +F++L +YQL + D G+ Y RE FLV
Sbjct: 467 KQSGSLPLSSLIHVLRSLTPNARGIFRLLIKYQLDNQDNPSYIGLCFQDFYQQCREAFLV 526
Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLL 282
+S +TL + LTEF+DH+L++T++ +DG + IP+ + L L
Sbjct: 527 NSDLTLRAQLTEFRDHKLIRTKKGTDGVEYLLIPVDNGILTDFL 570
>sp|Q91628|ORC2_XENLA Origin recognition complex subunit 2 OS=Xenopus laevis GN=orc2 PE=2
SV=1
Length = 558
Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 153/275 (55%), Gaps = 21/275 (7%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L GF ++++G GSK++L+E F ++ L + +VIN + SI K ++ ++ E
Sbjct: 286 LHLGFNIILFGLGSKQSLIEKFRTSLLQDSLHIVINEFFPSITAKSILNSITEEALGHPG 345
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
+ R P Q F L F D L+ + ++IHN+D LR + QQ
Sbjct: 346 AFRS------PLDQMDFI------LQRFKDDPSLE-----LYLLIHNLDSQMLRGEKCQQ 388
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLILA 181
LG++A ++ ++AS+DH+NAPL+WD+ + +NW WY TF Y E + +L
Sbjct: 389 VLGQLASIPNLHLLASVDHINAPLMWDQSK-QSLYNWLWYETTTFGSYIEETSYENSLLV 447
Query: 182 HGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE---EGMPIDTLYATSRERFLV 238
S A + VL+SLTPNA+ +F++LAEYQ+++ D G+ Y RE FLV
Sbjct: 448 KRSGALALSSLTHVLRSLTPNARGIFRLLAEYQMANKDNPSYTGLSFQDFYQQCREAFLV 507
Query: 239 SSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPL 273
+S +TL + LTEF+DH+L++T++ DG + IPL
Sbjct: 508 NSDLTLRAQLTEFRDHKLIRTKKGMDGVEYLLIPL 542
>sp|Q24168|ORC2_DROME Origin recognition complex subunit 2 OS=Drosophila melanogaster
GN=Orc2 PE=1 SV=2
Length = 618
Score = 164 bits (414), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 156/288 (54%), Gaps = 23/288 (7%)
Query: 1 MLRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQC 60
+L GF +L+YG GSK LL+ F L + +V+V+NG+ S+ IK ++ ++ + +
Sbjct: 346 ILNEGFNILLYGLGSKHQLLQSFHREVLHKQTVLVVNGFFPSLTIKDMLDSITSDILD-- 403
Query: 61 KSKRKTPSGNLPRAQQPFNSRSM-DDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSET 119
+G P P + M ++ FA + + L +++HN+DG LR+ +
Sbjct: 404 -------AGISP--ANPHEAVDMIEEEFALIPETHL-------FLIVHNLDGAMLRNVKA 447
Query: 120 QQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFPLI 179
Q L R+A +I ++ASIDH+N PLLWD+ + FN+ W+ T PY E F +
Sbjct: 448 QAILSRLARIPNIHLLASIDHINTPLLWDQGKL-CSFNFSWWDCTTMLPYTNETAFENSL 506
Query: 180 LAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDE---EGMPIDTLYATSRERF 236
L S + V SLT N++ ++ ++ +YQL + +GMP LY++ RE F
Sbjct: 507 LVQNSGELALSSMRSVFSSLTTNSRGIYMLIVKYQLKNKGNATYQGMPFRDLYSSCREAF 566
Query: 237 LVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284
LVSS + L + LTEF DH+LVK++R DG + IP+ L++ L E
Sbjct: 567 LVSSDLALRAQLTEFLDHKLVKSKRSVDGSEQLTIPIDGALLQQFLEE 614
>sp|Q09142|ORC2_SCHPO Origin recognition complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=orc2 PE=1 SV=1
Length = 535
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 134/296 (45%), Gaps = 30/296 (10%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L F LL YGFGSK+ L F L + + V+ GY + +K V+ + E L
Sbjct: 254 LVNNFNLLFYGFGSKEHFLSSFVEKKLPCFPIFVVKGYFPQLQLKNVLSSFLEFL----- 308
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQ 121
TP+ ++ + S S+ + +F G + ++HNIDG L D Q
Sbjct: 309 --EVTPAASV--SDMLIQSLSIINSPSFSLGK--------IVFLVHNIDGESLIDERFQS 356
Query: 122 HLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMF-FPLIL 180
L IA ++ IAS+DHVN LLWD + + FN+ + TFA Y E + L +
Sbjct: 357 ALAAIASSKNVYFIASVDHVNFALLWDTSL-ESSFNFVMHDATTFARYYNETTYENSLGI 415
Query: 181 AHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLS-----------HPDEEGMPIDTLY 229
+ + K VL SL N++ +FK L +QL ++ G+ + +
Sbjct: 416 GRANVSNKEKAIKHVLYSLPANSRGIFKFLLIHQLERMMDTQDFDARQGEKVGIEYRSFF 475
Query: 230 ATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285
FL S++ S LTEF DH +++++R + ++P LE LL ++
Sbjct: 476 QKCSAEFLCSNEPNFRSQLTEFFDHNIIESKRDVSNSEILWVPYPKNLLEILLEDM 531
>sp|Q55CU7|ORC2_DICDI Origin recognition complex subunit 2 OS=Dictyostelium discoideum
GN=orcB PE=3 SV=1
Length = 391
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 151/306 (49%), Gaps = 33/306 (10%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L+ + +L+ GFGSK L+E F T+ + GYL +++++ ++ + L+ K
Sbjct: 92 LKFDYSVLVSGFGSKIQLIETFVKEFCTDGPSLHFKGYLPNLSVRDLLYKITFSLFGIDK 151
Query: 62 SKRKTPSGNLPRAQQPFNSRSMDDLFAFLDGSELKEN-----DY----FVCVVIHNIDGP 112
K +P + + F S SMD +++++ DY V VVIHNIDG
Sbjct: 152 -KIASPIAHCNFIKSIFESGSMD-------INKMRQTFGGRFDYGIPDHVYVVIHNIDGY 203
Query: 113 GLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVE 172
LR+ +Q L +A + MIA+ID + A LLWD +M+ + FNW Y +PT+ PY +E
Sbjct: 204 SLRNETSQLTLALLATIPQVHMIATIDAIGAQLLWDNRML-SNFNWTTYSMPTYQPYDLE 262
Query: 173 GMF--------FPLILAHGSSAQTAK-----TAAIVLQSLTPNAQSVFKILAEYQLSHPD 219
+ + SS+ T K T VL+SLT + +FK L Y L
Sbjct: 263 LSYDTNTKGGGGGGGIGSKSSSGTNKNLQPSTILTVLKSLTEISTDIFKELLTY-LIKKK 321
Query: 220 EEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALE 279
+ M L+ R+ FLVSS+ L + L EF DH+++ + D IP+ + +E
Sbjct: 322 KNKMEFKILFDICRDAFLVSSESGLKTQLREFIDHKIIIQKEIGDTT-FLIIPIETSVME 380
Query: 280 KLLSEI 285
+LS++
Sbjct: 381 IILSQL 386
>sp|P32833|ORC2_YEAST Origin recognition complex subunit 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ORC2 PE=1 SV=2
Length = 620
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 147/320 (45%), Gaps = 47/320 (14%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTE---YS------------------VVVINGYL 40
L GF LL YG GSK+ LE+FA L+ YS +++NGY
Sbjct: 308 LTQGFSLLFYGVGSKRNFLEEFAIDYLSPKIAYSQLAYENELQQNKPVNSIPCLILNGYN 367
Query: 41 QSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF-NSRSMDDLFAFLDGSELKEND 99
S N + V + ++L L R++ + + + + +D + + D
Sbjct: 368 PSCNYRDVFKEITDLLV----------PAELTRSETKYWGNHVILQIQKMIDFYKNQPLD 417
Query: 100 YFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWH 159
+ +V+HN+DGP +R + Q L ++ I ++AS DH+ APLLWD M +N+
Sbjct: 418 IKLILVVHNLDGPSIRKNTFQTMLSFLSVIRQIAIVASTDHIYAPLLWD-NMKAQNYNFV 476
Query: 160 WYHVPTFAPYKVEGMFFPLI-LAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHP 218
++ + F P VE F ++ + ++ A+ A VLQSLT N++ ++K+L E Q+ +
Sbjct: 477 FHDISNFEPSTVESTFQDVMKMGKSDTSSGAEGAKYVLQSLTVNSKKMYKLLIETQMQNM 536
Query: 219 DEEGMPIDTLYATSRE-------------RFLVSSQVTLNSHLTEFKDHELVKTRRHSDG 265
T R F+ S+++ L S L EF +H++ +++ G
Sbjct: 537 GNLSANTGPKRGTQRTGVELKLFNHLCAADFIASNEIALRSMLREFIEHKMANITKNNSG 596
Query: 266 QDCFYIPLASEALEKLLSEI 285
+ ++P LEKLL +
Sbjct: 597 MEIIWVPYTYAELEKLLKTV 616
>sp|Q21037|ORC2_CAEEL Origin recognition complex subunit 2 OS=Caenorhabditis elegans
GN=orc-2 PE=2 SV=2
Length = 430
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 127/279 (45%), Gaps = 44/279 (15%)
Query: 2 LRCGFGLLMYGFGSKKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCK 61
L GF +L++G GSK+ +L +F + L++Y+ + ++ +N+K ++ + E + C
Sbjct: 155 LAAGFNILLHGVGSKRDVLTEFEN-ELSDYTYMRVDARKDGLNVKVLLGAINENMKLNCN 213
Query: 62 SKRKTPSGNLPRA-QQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQ 120
KR + + R+ ++ NS+ + ++I NI+ P R +
Sbjct: 214 VKRGQSTISWARSIRRKMNSQQL-------------------ILIIDNIEAPDWRSDQE- 253
Query: 121 QHLGRIAFC------SHIRMIASIDHVNAPLLWDKK------MVHTQFNWHWYHVPTFAP 168
AFC +++IA++DH+ + +W+ + VH N + +P
Sbjct: 254 ------AFCELLENRDSVKLIATVDHIYSTFIWNSRQLSSLSFVHITINT--FEIPLQEL 305
Query: 169 YKVEGMFFPLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTL 228
+ L S+ T + + +SL N+Q +F++ +Q+ ++ + L
Sbjct: 306 MTGDSRLLGLDARSNQSSHTMSSLDVFWKSLAVNSQKLFRLF--FQMYFDTKKPVKFWDL 363
Query: 229 YATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267
+ +++ F+ S+ L + L EFKDH ++K R DG D
Sbjct: 364 FNAAKDDFIASTDAALRTQLVEFKDHRVLKWTRGDDGND 402
>sp|Q6N4D3|SYT_RHOPA Threonine--tRNA ligase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=thrS PE=3 SV=1
Length = 658
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 133 RMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFA 167
R+ D VNAP + DK + T +W WY FA
Sbjct: 286 RLAGDYDEVNAPQILDKVLWETSGHWEWYRENMFA 320
>sp|B5ZQK2|SYT_RHILW Threonine--tRNA ligase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=thrS PE=3 SV=1
Length = 668
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 127 AFCSHIRMIASIDH--VNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFP 177
A S++R ++D+ VNAP + D + T +W WY FA M P
Sbjct: 278 ALVSYMRRRLAVDYEEVNAPQVLDTALWETSGHWGWYQENMFAVKSAHAMTHP 330
>sp|B3PNV4|SYT_RHIE6 Threonine--tRNA ligase OS=Rhizobium etli (strain CIAT 652) GN=thrS
PE=3 SV=1
Length = 668
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 133 RMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMFFP 177
R+ A VNAP + D + T +W WY FA M P
Sbjct: 286 RLAADYQEVNAPQVLDTSLWETSGHWGWYQENMFAVKSAHAMTHP 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,267,688
Number of Sequences: 539616
Number of extensions: 3887129
Number of successful extensions: 8286
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8242
Number of HSP's gapped (non-prelim): 19
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)