Query 023087
Match_columns 287
No_of_seqs 108 out of 213
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023087.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023087hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1u_A Cell division control p 97.1 0.077 2.6E-06 48.1 20.1 255 4-284 43-379 (387)
2 2qby_B CDC6 homolog 3, cell di 95.1 1.3 4.5E-05 40.1 17.2 248 5-284 45-367 (384)
3 2qby_A CDC6 homolog 1, cell di 94.6 1.2 4.1E-05 40.0 15.6 256 5-284 45-376 (386)
4 1fnn_A CDC6P, cell division co 94.0 3.3 0.00011 37.3 20.9 252 7-285 46-383 (389)
5 2fu4_A Ferric uptake regulatio 86.1 1.2 4.2E-05 31.8 5.1 66 199-269 15-80 (83)
6 1w5s_A Origin recognition comp 82.4 6.9 0.00024 35.4 9.8 87 197-285 304-402 (412)
7 3te6_A Regulatory protein SIR3 79.2 24 0.00082 32.1 12.2 143 4-173 44-202 (318)
8 2p65_A Hypothetical protein PF 74.4 7.1 0.00024 30.7 6.4 122 5-160 43-182 (187)
9 3r0a_A Putative transcriptiona 74.3 24 0.00083 27.0 9.4 78 197-285 22-103 (123)
10 2zkz_A Transcriptional repress 73.1 20 0.0007 26.3 8.3 82 189-286 14-96 (99)
11 1w5s_A Origin recognition comp 72.1 12 0.0004 33.9 8.1 117 5-139 50-187 (412)
12 1r1u_A CZRA, repressor protein 70.4 28 0.00096 25.7 8.6 81 189-285 13-94 (106)
13 3jth_A Transcription activator 66.7 17 0.00059 26.3 6.6 80 190-285 11-91 (98)
14 2fna_A Conserved hypothetical 66.2 43 0.0015 29.1 10.3 127 7-139 32-178 (357)
15 1l8q_A Chromosomal replication 64.5 73 0.0025 27.9 12.7 34 5-38 37-73 (324)
16 3u61_B DNA polymerase accessor 57.0 64 0.0022 28.1 9.7 62 100-172 105-168 (324)
17 2fe3_A Peroxide operon regulat 55.7 31 0.0011 27.3 6.7 63 199-267 20-82 (145)
18 2v9v_A Selenocysteine-specific 54.1 18 0.00062 27.8 5.0 54 204-260 69-122 (135)
19 2o03_A Probable zinc uptake re 53.1 26 0.00088 27.2 5.7 65 199-269 9-73 (131)
20 2qp9_X Vacuolar protein sortin 51.9 53 0.0018 29.7 8.5 114 5-160 84-212 (355)
21 2xig_A Ferric uptake regulatio 50.1 36 0.0012 27.1 6.3 63 199-267 25-87 (150)
22 3cuo_A Uncharacterized HTH-typ 50.0 40 0.0014 23.8 6.1 80 190-284 12-92 (99)
23 1u2w_A CADC repressor, cadmium 48.5 39 0.0013 25.7 6.0 81 190-285 30-111 (122)
24 2kko_A Possible transcriptiona 48.0 40 0.0014 25.0 5.9 80 190-285 13-93 (108)
25 1mzb_A Ferric uptake regulatio 47.6 36 0.0012 26.5 5.8 64 199-267 16-79 (136)
26 2qen_A Walker-type ATPase; unk 46.5 52 0.0018 28.5 7.3 123 5-138 31-171 (350)
27 3cf0_A Transitional endoplasmi 45.3 1.5E+02 0.0052 25.7 14.5 113 4-158 48-179 (301)
28 1okr_A MECI, methicillin resis 43.0 82 0.0028 23.2 7.1 68 198-275 7-74 (123)
29 2oqg_A Possible transcriptiona 42.6 93 0.0032 22.6 7.2 60 190-262 9-69 (114)
30 3eyy_A Putative iron uptake re 42.1 64 0.0022 25.4 6.5 62 199-267 17-78 (145)
31 1ub9_A Hypothetical protein PH 40.1 56 0.0019 23.0 5.5 72 200-284 15-90 (100)
32 2y75_A HTH-type transcriptiona 39.0 47 0.0016 25.3 5.2 59 221-284 25-83 (129)
33 2qz4_A Paraplegin; AAA+, SPG7, 39.0 1.6E+02 0.0056 24.2 12.8 58 100-161 98-173 (262)
34 1p6r_A Penicillinase repressor 37.6 96 0.0033 21.3 6.3 66 198-273 6-71 (82)
35 2zan_A Vacuolar protein sortin 37.5 2.5E+02 0.0087 26.0 12.1 112 6-158 168-294 (444)
36 2w58_A DNAI, primosome compone 36.9 87 0.003 25.1 6.8 32 6-37 55-89 (202)
37 4akg_A Glutathione S-transfera 36.4 63 0.0021 37.9 7.5 133 2-165 1264-1419(2695)
38 3mwm_A ZUR, putative metal upt 36.2 34 0.0011 26.9 3.9 64 199-268 12-75 (139)
39 2w57_A Ferric uptake regulatio 35.4 42 0.0014 26.7 4.4 64 199-267 15-78 (150)
40 2d1h_A ST1889, 109AA long hypo 35.2 1.2E+02 0.004 21.4 8.0 60 193-263 13-72 (109)
41 1r1t_A Transcriptional repress 35.1 1.4E+02 0.0049 22.5 7.9 80 190-285 34-114 (122)
42 2co5_A Viral protein F93; vira 34.7 71 0.0024 23.8 5.4 84 195-285 3-88 (99)
43 3bro_A Transcriptional regulat 34.6 88 0.003 23.3 6.1 68 198-275 31-98 (141)
44 3lwf_A LIN1550 protein, putati 34.2 1.1E+02 0.0037 24.7 6.8 60 221-285 43-102 (159)
45 2dbb_A Putative HTH-type trans 33.6 1.2E+02 0.0041 23.4 6.9 77 198-286 6-90 (151)
46 4ets_A Ferric uptake regulatio 32.7 76 0.0026 25.6 5.6 62 198-265 30-93 (162)
47 1sxj_A Activator 1 95 kDa subu 32.4 57 0.002 31.1 5.6 113 6-144 78-192 (516)
48 2z4s_A Chromosomal replication 32.4 3.1E+02 0.01 25.4 13.2 166 6-212 131-308 (440)
49 2jsc_A Transcriptional regulat 32.4 50 0.0017 24.9 4.3 75 195-285 14-89 (118)
50 3t8r_A Staphylococcus aureus C 29.2 21 0.00073 28.3 1.6 59 222-285 28-86 (143)
51 3bpv_A Transcriptional regulat 28.9 1.4E+02 0.0048 22.0 6.4 66 198-275 26-91 (138)
52 2dk5_A DNA-directed RNA polyme 27.6 1.1E+02 0.0036 22.5 5.2 59 196-264 15-73 (91)
53 3eco_A MEPR; mutlidrug efflux 26.7 1.3E+02 0.0045 22.3 5.8 67 198-274 28-94 (139)
54 3rjp_A COVR; winged helix-turn 26.4 53 0.0018 23.5 3.3 47 198-250 22-69 (96)
55 2r8b_A AGR_C_4453P, uncharacte 25.5 42 0.0014 27.4 2.9 33 8-40 66-98 (251)
56 1qvr_A CLPB protein; coiled co 24.9 1.6E+02 0.0056 29.9 7.7 66 99-165 262-333 (854)
57 2hwv_A DNA-binding response re 24.7 99 0.0034 23.4 4.8 48 198-250 43-90 (121)
58 3fsg_A Alpha/beta superfamily 24.2 1.2E+02 0.0042 24.0 5.6 14 98-111 87-100 (272)
59 2a61_A Transcriptional regulat 23.7 2.2E+02 0.0076 21.0 8.0 66 198-275 30-95 (145)
60 2nnn_A Probable transcriptiona 23.5 2.2E+02 0.0075 20.8 7.4 66 198-275 35-100 (140)
61 2yu3_A DNA-directed RNA polyme 23.3 1.1E+02 0.0036 23.0 4.5 58 196-263 32-89 (95)
62 3vkg_A Dynein heavy chain, cyt 23.1 1.3E+02 0.0045 35.9 7.2 133 2-164 1301-1456(3245)
63 1sfx_A Conserved hypothetical 22.7 2E+02 0.0068 20.0 10.0 68 198-277 17-85 (109)
64 2eth_A Transcriptional regulat 22.6 1.9E+02 0.0063 22.0 6.1 65 198-274 41-105 (154)
65 2cfx_A HTH-type transcriptiona 22.3 1.2E+02 0.0042 23.3 5.0 75 199-285 3-85 (144)
66 3zq7_A KDP operon transcriptio 22.1 60 0.002 23.5 2.9 46 198-248 28-73 (102)
67 3pvs_A Replication-associated 21.7 4.9E+02 0.017 24.2 13.4 106 100-215 106-220 (447)
68 3oop_A LIN2960 protein; protei 21.7 1.3E+02 0.0043 22.6 4.9 54 199-264 35-88 (143)
69 2bv6_A MGRA, HTH-type transcri 21.1 1.1E+02 0.0036 22.9 4.3 67 198-276 34-100 (142)
70 3pxg_A Negative regulator of g 20.9 1.9E+02 0.0063 27.2 6.8 68 83-164 256-325 (468)
71 2z51_A NIFU-like protein 2, ch 20.4 77 0.0026 25.8 3.4 46 239-287 50-99 (154)
72 3ec2_A DNA replication protein 20.4 3E+02 0.01 21.3 7.2 40 101-141 101-143 (180)
No 1
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.08 E-value=0.077 Score=48.12 Aligned_cols=255 Identities=17% Similarity=0.155 Sum_probs=153.6
Q ss_pred CCccEEEEecc--chHHHHHHHHHhhcC-------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 023087 4 CGFGLLMYGFG--SKKALLEDFASTALT-------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRA 74 (287)
Q Consensus 4 ~GFnlL~YG~G--SKr~lL~~Fa~~~l~-------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~ 74 (287)
.+-++++||-. -|..+++.+++.... +.+++.||+... .+..+++..+...+... .
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~l~~~l~~~-----------~--- 107 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR-ETPYRVASAIAEAVGVR-----------V--- 107 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS-CSHHHHHHHHHHHHSCC-----------C---
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC-CCHHHHHHHHHHHhCCC-----------C---
Confidence 45689999864 388999998876533 456788998653 46788888887766220 0
Q ss_pred CCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhc-------CCCeEEEEeecCCCCcccc
Q 023087 75 QQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAF-------CSHIRMIASIDHVNAPLLW 147 (287)
Q Consensus 75 ~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~-------~~~I~lIaSiDhinaplLW 147 (287)
+....+..++.+.+..... ....+.+|+|-.+|.-.-.. ..|..|..|.. .+++.+|++......+-..
T Consensus 108 --~~~~~~~~~~~~~l~~~l~-~~~~~~vlilDEi~~l~~~~-~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l 183 (387)
T 2v1u_A 108 --PFTGLSVGEVYERLVKRLS-RLRGIYIIVLDEIDFLPKRP-GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENL 183 (387)
T ss_dssp --CSSCCCHHHHHHHHHHHHT-TSCSEEEEEEETTTHHHHST-THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSS
T ss_pred --CCCCCCHHHHHHHHHHHHh-ccCCeEEEEEccHhhhcccC-CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhh
Confidence 1112234444444433221 24568899999998743211 15677766643 4578888888766433334
Q ss_pred CcccccccccEEEEeCCCCCCccccccc----------------chhh---h---hc---CC------------------
Q 023087 148 DKKMVHTQFNWHWYHVPTFAPYKVEGMF----------------FPLI---L---AH---GS------------------ 184 (287)
Q Consensus 148 d~~~~~~~fnf~~~d~tT~~pY~~E~~~----------------~~~l---~---~~---~~------------------ 184 (287)
+.... .+|+... -.+.||+.|-.. .+.. + .. +.
T Consensus 184 ~~~l~-~r~~~~~---i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~ 259 (387)
T 2v1u_A 184 EPRVK-SSLGEVE---LVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERR 259 (387)
T ss_dssp CHHHH-TTTTSEE---CCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHH-hcCCCeE---EeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHc
Confidence 55555 6776532 346677655210 0000 0 00 10
Q ss_pred --ccch------------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH---H--hhccHHHHH
Q 023087 185 --SAQT------------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRER---F--LVSSQVTLN 245 (287)
Q Consensus 185 --~~~~------------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~---f--i~sse~~lr 245 (287)
...+ ......++++|++.++.++..++... . ++.++...++|+..++- . -..+...+.
T Consensus 260 ~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (387)
T 2v1u_A 260 REERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLE--D-GGRPASTGEIYERYKELTSTLGLEHVTLRRVS 336 (387)
T ss_dssp TCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHS--S-SSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHh--c-CCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHH
Confidence 0000 11233467889999999988887653 2 23467788777655441 1 123568999
Q ss_pred HHhhhhcccceEEEeeC---CCC-ceEEEEeCCHHHHHHHHHH
Q 023087 246 SHLTEFKDHELVKTRRH---SDG-QDCFYIPLASEALEKLLSE 284 (287)
Q Consensus 246 ~~L~EF~DH~li~~~k~---~~G-~e~l~Ip~~~~~l~~iLe~ 284 (287)
..|.++.+.++|..+.. ..| ...+.+.++.+++.+.|++
T Consensus 337 ~~l~~L~~~gli~~~~~~~g~~g~~~~~~l~~~~~~i~~~l~~ 379 (387)
T 2v1u_A 337 GIISELDMLGIVKSRVVSRGRYGKTREVSLDADRLAVENALSE 379 (387)
T ss_dssp HHHHHHHHTTSEEEEEEECGGGCEEEEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEeecCCCCCceeEEEecCCHHHHHHHHhc
Confidence 99999999999998542 234 3457789999999998875
No 2
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.07 E-value=1.3 Score=40.06 Aligned_cols=248 Identities=15% Similarity=0.160 Sum_probs=137.0
Q ss_pred CccEEEEecc-c-hHHHHHHHHHhhcC---------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 023087 5 GFGLLMYGFG-S-KKALLEDFASTALT---------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPR 73 (287)
Q Consensus 5 GFnlL~YG~G-S-Kr~lL~~Fa~~~l~---------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~ 73 (287)
+-++++||-. + |..+++.++..... +.+++.+|+.....+..+++..+...+.+.. .+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~----------~~- 113 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFS----------VP- 113 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSC----------CC-
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCC----------CC-
Confidence 4479999863 3 88999998876422 5678889987654478888888887765421 00
Q ss_pred CCCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHH-HHHHhcC-CCeEEEEeecCCCCccccCccc
Q 023087 74 AQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQH-LGRIAFC-SHIRMIASIDHVNAPLLWDKKM 151 (287)
Q Consensus 74 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~-La~La~~-~~I~lIaSiDhinaplLWd~~~ 151 (287)
....+..++++.+..... ...+ +|+|.++|.-.-. ..+.. |..|... +++.+|++.......-..+...
T Consensus 114 ----~~~~~~~~~~~~l~~~l~--~~~~-vlilDEi~~l~~~--~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l 184 (384)
T 2qby_B 114 ----KHGINLGEYIDKIKNGTR--NIRA-IIYLDEVDTLVKR--RGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRV 184 (384)
T ss_dssp ----SSSSCTHHHHHHHHHHHS--SSCE-EEEEETTHHHHHS--TTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHH
T ss_pred ----CCCCCHHHHHHHHHHHhc--cCCC-EEEEECHHHhccC--CCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHH
Confidence 011122334444332211 1223 8889988864221 12455 6666655 7999999987764333335554
Q ss_pred ccccccEEEEeCCCCCCccccccc----------------chhh---h---hc---CC------------------ccch
Q 023087 152 VHTQFNWHWYHVPTFAPYKVEGMF----------------FPLI---L---AH---GS------------------SAQT 188 (287)
Q Consensus 152 ~~~~fnf~~~d~tT~~pY~~E~~~----------------~~~l---~---~~---~~------------------~~~~ 188 (287)
. .+|.. .+ .+.||+.|-.. .+.. + .+ +. ...+
T Consensus 185 ~-sr~~~-~i---~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~ 259 (384)
T 2qby_B 185 L-SSLGP-SV---IFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIR 259 (384)
T ss_dssp H-HTCCC-EE---EECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCC
T ss_pred H-hcCCC-eE---EECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 4 56654 33 35566544210 0000 0 00 00 0011
Q ss_pred hhHHHH----HH--------hhcCHhHHHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHH--hhccHHHHHHHhhhhcc
Q 023087 189 AKTAAI----VL--------QSLTPNAQSVFKILAEYQLSHPDEE-GMPIDTLYATSRERF--LVSSQVTLNSHLTEFKD 253 (287)
Q Consensus 189 ~~g~~~----VL--------~SLt~nar~lf~lLa~~QL~~~~~~-gv~~~~L~~~~~e~f--i~sse~~lr~~L~EF~D 253 (287)
.+-+.. +. ++|++.++.++..++. . .. | +....|....+.. -..+...+...|.++.+
T Consensus 260 ~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~-~-----~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~ 332 (384)
T 2qby_B 260 KEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIE-S-----EDVM-SAHKMYTDLCNKFKQKPLSYRRFSDIISELDM 332 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHT-C-----CBHH-HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHH-h-----cccC-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 111111 22 3455666666665554 1 11 1 2223333333322 12467889999999999
Q ss_pred cceEEEeeC---CCC-ceEEEEeCCHHHHHHHHHH
Q 023087 254 HELVKTRRH---SDG-QDCFYIPLASEALEKLLSE 284 (287)
Q Consensus 254 H~li~~~k~---~~G-~e~l~Ip~~~~~l~~iLe~ 284 (287)
.++|..+.. ..| ...+...++.+++.+.|++
T Consensus 333 ~gli~~~~~~~g~~g~~~~~~l~~~~~~v~~~l~~ 367 (384)
T 2qby_B 333 FGIVKIRIINRGRAGGVKKYALVEDKEKVLRALNE 367 (384)
T ss_dssp TTSEEEEEECCTTTTCCEEEEEESSSHHHHHHHHH
T ss_pred CCCEEEEeccCCCCCceEEEEecCCHHHHHHHHHH
Confidence 999987542 223 3468889999998888775
No 3
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.62 E-value=1.2 Score=39.96 Aligned_cols=256 Identities=18% Similarity=0.209 Sum_probs=138.0
Q ss_pred CccEEEEecc--chHHHHHHHHHhhcC----CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC
Q 023087 5 GFGLLMYGFG--SKKALLEDFASTALT----EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPF 78 (287)
Q Consensus 5 GFnlL~YG~G--SKr~lL~~Fa~~~l~----~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (287)
|-++++||-. -|..+++.++...-. +.+++.+|+... .+..+++..+...+.. .. +.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~i~~~l~~-----------~~-----~~ 107 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI-DTPYRVLADLLESLDV-----------KV-----PF 107 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH-CSHHHHHHHHTTTTSC-----------CC-----CS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC-CCHHHHHHHHHHHhCC-----------CC-----CC
Confidence 5689999863 399999999976543 567888997643 2556666655433210 00 01
Q ss_pred CCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCC-ChhHHHHHHHHh---cCCCeEEEEeecCCCCccccCcccccc
Q 023087 79 NSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLR-DSETQQHLGRIA---FCSHIRMIASIDHVNAPLLWDKKMVHT 154 (287)
Q Consensus 79 ~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR-~~~~q~~La~La---~~~~I~lIaSiDhinaplLWd~~~~~~ 154 (287)
...+..++.+.+..... ....+.+|+|-.+|.-.-. +......|..+. .-.++.+|++.-.....-..+.... +
T Consensus 108 ~~~~~~~~~~~l~~~l~-~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~-~ 185 (386)
T 2qby_A 108 TGLSIAELYRRLVKAVR-DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVK-S 185 (386)
T ss_dssp SSCCHHHHHHHHHHHHH-TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHH-H
T ss_pred CCCCHHHHHHHHHHHHh-ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHh-c
Confidence 11233444444332211 1344788998888764211 123333333333 3447888888765543222344433 4
Q ss_pred cccEEEEeCCCCCCcccccc----------------cchh---hh---hc---CC-c-------------------cch-
Q 023087 155 QFNWHWYHVPTFAPYKVEGM----------------FFPL---IL---AH---GS-S-------------------AQT- 188 (287)
Q Consensus 155 ~fnf~~~d~tT~~pY~~E~~----------------~~~~---l~---~~---~~-~-------------------~~~- 188 (287)
+|....+ .+.||+.|-. +.+. .+ .. +. + ..+
T Consensus 186 r~~~~~i---~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~ 262 (386)
T 2qby_A 186 SLSEEEI---IFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKE 262 (386)
T ss_dssp TTTTEEE---EECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred cCCCeeE---EeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCH
Confidence 5543333 3445554411 0000 00 00 10 0 000
Q ss_pred -----------hhHHHHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HH--hhccHHHHHHHhhhhc
Q 023087 189 -----------AKTAAIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE---RF--LVSSQVTLNSHLTEFK 252 (287)
Q Consensus 189 -----------~~g~~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e---~f--i~sse~~lr~~L~EF~ 252 (287)
.......++.+|+.++.++..++...-. +...+...++|+.-.+ .. -.-+...+...|.++.
T Consensus 263 ~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~--g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~ 340 (386)
T 2qby_A 263 EYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSE--ENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELD 340 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC-------CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhc--CCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 0123345678999999999999865311 2234567766554333 22 1124588999999999
Q ss_pred ccceEEEee---CCCC-ceEEEEeCCHHHHHHHHHH
Q 023087 253 DHELVKTRR---HSDG-QDCFYIPLASEALEKLLSE 284 (287)
Q Consensus 253 DH~li~~~k---~~~G-~e~l~Ip~~~~~l~~iLe~ 284 (287)
+.++|..+. +..| ...+....+.+++.+.|++
T Consensus 341 ~~gli~~~~~~~~~~g~y~~~~l~~~~~~v~~~l~~ 376 (386)
T 2qby_A 341 MVGILTAKVVNRGRYGKTKEIGLAVDKNIIVRSLIE 376 (386)
T ss_dssp HHTSEEEEECCCTTSCCCEEEEESSCSHHHHHHHHH
T ss_pred hCCCEEEEeecCCCCCCeEEEEeCCCHHHHHHHHhc
Confidence 999997743 2334 2457788899999988876
No 4
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.02 E-value=3.3 Score=37.26 Aligned_cols=252 Identities=15% Similarity=0.168 Sum_probs=145.1
Q ss_pred cEEEEec-cc-hHHHHHHHHHhhcCC--CcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc
Q 023087 7 GLLMYGF-GS-KKALLEDFASTALTE--YSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRS 82 (287)
Q Consensus 7 nlL~YG~-GS-Kr~lL~~Fa~~~l~~--~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
++++||- |+ |..+++.++...-.. ..++.+|+.. ..+..+++..+...+... .+ ....+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l~~~-----------~~-----~~~~~ 108 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI-YRNFTAIIGEIARSLNIP-----------FP-----RRGLS 108 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT-CCSHHHHHHHHHHHTTCC-----------CC-----SSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc-CCCHHHHHHHHHHHhCcc-----------CC-----CCCCC
Confidence 7999974 22 999999999776553 5678899743 456778887776654210 00 01122
Q ss_pred HHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcC------CCeEEEEeecCCCCccccCcccccccc
Q 023087 83 MDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFC------SHIRMIASIDHVNAPLLWDKKMVHTQF 156 (287)
Q Consensus 83 ~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~------~~I~lIaSiDhinaplLWd~~~~~~~f 156 (287)
..++.+.+...... ...+.+|+|-.+|.- ++..+..|..+... .++.+|++......+-.++.... ++|
T Consensus 109 ~~~~~~~l~~~l~~-~~~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~-~r~ 183 (389)
T 1fnn_A 109 RDEFLALLVEHLRE-RDLYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTR-GIM 183 (389)
T ss_dssp HHHHHHHHHHHHHH-TTCCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHH-HHH
T ss_pred HHHHHHHHHHHHhh-cCCeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhh-hcC
Confidence 34444444322111 345788999988875 66777777666542 48899988655432223444444 556
Q ss_pred cEEEEeCCCCCCcccccc----------------cchh----hh--h---------cCC--------------------c
Q 023087 157 NWHWYHVPTFAPYKVEGM----------------FFPL----IL--A---------HGS--------------------S 185 (287)
Q Consensus 157 nf~~~d~tT~~pY~~E~~----------------~~~~----l~--~---------~~~--------------------~ 185 (287)
+... -.|.||+.|-. +.+. +. . .+. .
T Consensus 184 ~~~~---i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~ 260 (389)
T 1fnn_A 184 GKYV---IRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRK 260 (389)
T ss_dssp TTCE---EECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCce---EEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 5422 23556665411 1010 00 1 110 0
Q ss_pred cchh------------hHHHHHHhhcCHhHHHHHHHHHHHHh-cCCCCCCCCHHHHHHHHHHH---H--hhccHHHHHHH
Q 023087 186 AQTA------------KTAAIVLQSLTPNAQSVFKILAEYQL-SHPDEEGMPIDTLYATSRER---F--LVSSQVTLNSH 247 (287)
Q Consensus 186 ~~~~------------~g~~~VL~SLt~nar~lf~lLa~~QL-~~~~~~gv~~~~L~~~~~e~---f--i~sse~~lr~~ 247 (287)
.... .-+..++++|+++.+.+...++...- ++. ..+...++++...+- . ---+...+...
T Consensus 261 ~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 338 (389)
T 1fnn_A 261 HIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHT--PYITFGDAEESYKIVCEEYGERPRVHSQLWSY 338 (389)
T ss_dssp SCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCS--SCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccC--CCccHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 0000 11234689999999999998887642 121 156777777654441 0 11267899999
Q ss_pred hhhhcccceEEEeeC-----CCC-ceEEEEeCCHHHHH-HHHHHh
Q 023087 248 LTEFKDHELVKTRRH-----SDG-QDCFYIPLASEALE-KLLSEI 285 (287)
Q Consensus 248 L~EF~DH~li~~~k~-----~~G-~e~l~Ip~~~~~l~-~iLe~l 285 (287)
|.++.+.++|..... ..| ...+.+..+.+++. .+++++
T Consensus 339 l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~ 383 (389)
T 1fnn_A 339 LNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKL 383 (389)
T ss_dssp HHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHH
Confidence 999999999988653 123 34566776666554 455554
No 5
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.07 E-value=1.2 Score=31.80 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=52.5
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEE
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCF 269 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l 269 (287)
+|+....|+..|.+. +...++..+|++.++++..--|..++...|..|.+.++|....+.+|.-.+
T Consensus 15 ~t~~r~~IL~~l~~~-----~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 15 VTLPRLKILEVLQEP-----DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp CCHHHHHHHHHHTSG-----GGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred cCHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 688888888877543 114588999999999987767999999999999999999887765555444
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.37 E-value=6.9 Score=35.45 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=59.4
Q ss_pred hhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH---HHh-h--ccHHHHHHHhhhhcccceEEEeeC---CCC-c
Q 023087 197 QSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE---RFL-V--SSQVTLNSHLTEFKDHELVKTRRH---SDG-Q 266 (287)
Q Consensus 197 ~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e---~fi-~--sse~~lr~~L~EF~DH~li~~~k~---~~G-~ 266 (287)
..||+..+.++..++..-- . +...++..++|+...+ +.+ . -++..+...|.++.++++|..... ..| .
T Consensus 304 ~~l~~~~~~~l~aia~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~ 381 (412)
T 1w5s_A 304 EALSIHELIILRLIAEATL-G-GMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRT 381 (412)
T ss_dssp SSSCHHHHHHHHHHHHHHH-T-TCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------C
T ss_pred HcCCHHHHHHHHHHHHHHh-c-CCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCce
Confidence 5789999999998886431 1 2235667777765544 111 1 246778899999999999987542 222 2
Q ss_pred eEEEEe--CCHHHHHHHHHHh
Q 023087 267 DCFYIP--LASEALEKLLSEI 285 (287)
Q Consensus 267 e~l~Ip--~~~~~l~~iLe~l 285 (287)
..+.+. ++.+++.+.|+++
T Consensus 382 ~~~~l~~~~~~~~~~~~~~~~ 402 (412)
T 1w5s_A 382 TLFRLAPHLPADRLIEVVDNI 402 (412)
T ss_dssp CEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHHH
Confidence 357788 8999998888876
No 7
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.22 E-value=24 Score=32.10 Aligned_cols=143 Identities=10% Similarity=0.044 Sum_probs=84.0
Q ss_pred CCccEEEEec-cc-hHHHHHHHHHhhc--------CCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 023087 4 CGFGLLMYGF-GS-KKALLEDFASTAL--------TEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPR 73 (287)
Q Consensus 4 ~GFnlL~YG~-GS-Kr~lL~~Fa~~~l--------~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~ 73 (287)
.|-|+++||- |+ |..+.+..+++.- ++..++-|||..- .+-++++..|.+.+.+.. .+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~-~t~~~~~~~I~~~L~g~~----------~~- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL-AGMDALYEKIWFAISKEN----------LC- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC-C--HHHHHHHHHHHSCCC-------------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc-CCHHHHHHHHHHHhcCCC----------CC-
Confidence 4668999985 32 7777777766542 1345788999873 466788888887774421 00
Q ss_pred CCCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhc-----CCCeEEEEeecCCCCcc-cc
Q 023087 74 AQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAF-----CSHIRMIASIDHVNAPL-LW 147 (287)
Q Consensus 74 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~-----~~~I~lIaSiDhinapl-LW 147 (287)
.....+.+-+++.... .....+.++++..||.-. .|.+|-.|.. ..++-+||..-+...|- +-
T Consensus 112 -----~~~~~~~L~~~f~~~~-~~~~~~~ii~lDE~d~l~-----~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 112 -----GDISLEALNFYITNVP-KAKKRKTLILIQNPENLL-----SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp -----CCCCHHHHHHHHHHSC-GGGSCEEEEEEECCSSSC-----CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred -----chHHHHHHHHHHHHhh-hccCCceEEEEecHHHhh-----cchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 0112233333333211 123568899999999865 3666766643 34688888776665542 22
Q ss_pred CcccccccccEEEEeCCCCCCccccc
Q 023087 148 DKKMVHTQFNWHWYHVPTFAPYKVEG 173 (287)
Q Consensus 148 d~~~~~~~fnf~~~d~tT~~pY~~E~ 173 (287)
+.... ++|..- .=.|.||+.|=
T Consensus 181 ~~~v~-SR~~~~---~i~F~pYt~~e 202 (318)
T 3te6_A 181 NIMPS-LKAHFT---EIKLNKVDKNE 202 (318)
T ss_dssp HTCHH-HHTTEE---EEECCCCCHHH
T ss_pred chhhh-ccCCce---EEEeCCCCHHH
Confidence 44443 677642 22589998773
No 8
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=74.44 E-value=7.1 Score=30.67 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=66.3
Q ss_pred CccEEEEec-cc-hHHHHHHHHHhhcC--------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 023087 5 GFGLLMYGF-GS-KKALLEDFASTALT--------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRA 74 (287)
Q Consensus 5 GFnlL~YG~-GS-Kr~lL~~Fa~~~l~--------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~ 74 (287)
+-++++||- |+ |..+++.+++.... +.+++.++. .++.. . . .. .+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~-~---------~~-~~ 97 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL-------SSLIA-------G-A---------KY-RG 97 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH-------HHHHH-------H-C---------CS-HH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH-------HHhhc-------C-C---------Cc-hh
Confidence 558899986 65 88999999877644 344555543 11110 0 0 00 00
Q ss_pred CCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcC-CC-----ChhHHHHHHHHhcCCCeEEEEeecCCCCc--cc
Q 023087 75 QQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPG-LR-----DSETQQHLGRIAFCSHIRMIASIDHVNAP--LL 146 (287)
Q Consensus 75 ~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~-LR-----~~~~q~~La~La~~~~I~lIaSiDhinap--lL 146 (287)
.....+.++++.+.. ...+.+|+|.++|.-. -+ ....+..|..+..-.++.+|++....... +-
T Consensus 98 ---~~~~~~~~~~~~~~~-----~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~ 169 (187)
T 2p65_A 98 ---DFEERLKSILKEVQD-----AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIE 169 (187)
T ss_dssp ---HHHHHHHHHHHHHHH-----TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTT
T ss_pred ---HHHHHHHHHHHHHHh-----cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHh
Confidence 000112233343332 2346788888887643 11 14567777777777889999988755421 11
Q ss_pred cCcccccccccEEE
Q 023087 147 WDKKMVHTQFNWHW 160 (287)
Q Consensus 147 Wd~~~~~~~fnf~~ 160 (287)
-|.... ++|.-+.
T Consensus 170 ~~~~l~-~R~~~i~ 182 (187)
T 2p65_A 170 KDKALE-RRFQQIL 182 (187)
T ss_dssp TCHHHH-HHEEEEE
T ss_pred ccHHHH-HhcCccc
Confidence 244444 6666543
No 9
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=74.33 E-value=24 Score=27.02 Aligned_cols=78 Identities=14% Similarity=0.281 Sum_probs=59.1
Q ss_pred hhcCHhHHHHHHHHHHHHhcCCCCCC-CCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeC---CCCceEEEEe
Q 023087 197 QSLTPNAQSVFKILAEYQLSHPDEEG-MPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRH---SDGQDCFYIP 272 (287)
Q Consensus 197 ~SLt~nar~lf~lLa~~QL~~~~~~g-v~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~---~~G~e~l~Ip 272 (287)
--||+....++..|.+. ..+ ++..+|.+... -+..+....|..+.+.++|...+. ..|..+.+.+
T Consensus 22 ~gLt~~e~~il~~L~~~------~~~~~t~~eLa~~l~-----~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~ 90 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNE------PDRWIDTDALSKSLK-----LDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKI 90 (123)
T ss_dssp HTCCHHHHHHHHHHHHS------TTCCEEHHHHHHHHT-----SCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHC------CCCCcCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEec
Confidence 35999999999999754 122 78888876664 389999999999999999987643 2345667778
Q ss_pred CCHHHHHHHHHHh
Q 023087 273 LASEALEKLLSEI 285 (287)
Q Consensus 273 ~~~~~l~~iLe~l 285 (287)
-+.+++.+.+.+.
T Consensus 91 ~~~~~~~~~i~~~ 103 (123)
T 3r0a_A 91 YSKNQIRNIIQKI 103 (123)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 8888877666553
No 10
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=73.09 E-value=20 Score=26.25 Aligned_cols=82 Identities=17% Similarity=0.356 Sum_probs=57.3
Q ss_pred hhHHHHHHhhcC-HhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 189 AKTAAIVLQSLT-PNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 189 ~~g~~~VL~SLt-~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
.+-+..+++.|. |+-.+|+..|... +++...++-+.. =-|..++..+|+.+.+. +|..++ +|..
T Consensus 14 ~~~~~~~~~aL~~~~Rl~IL~~l~~~-------~~~~~~ela~~l-----~is~stvs~hL~~L~~~-lv~~~~--~gr~ 78 (99)
T 2zkz_A 14 LEDDAELLKTMAHPMRLKIVNELYKH-------KALNVTQIIQIL-----KLPQSTVSQHLCKMRGK-VLKRNR--QGLE 78 (99)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHH-------SCEEHHHHHHHH-----TCCHHHHHHHHHHHBTT-TBEEEE--ETTE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHC-------CCcCHHHHHHHH-----CcCHHHHHHHHHHHHHH-hhhheE--eCcE
Confidence 345566777777 4555777666543 346777764433 34889999999999999 998877 4665
Q ss_pred EEEEeCCHHHHHHHHHHhh
Q 023087 268 CFYIPLASEALEKLLSEIN 286 (287)
Q Consensus 268 ~l~Ip~~~~~l~~iLe~l~ 286 (287)
...-+..+.++++++.+.
T Consensus 79 -~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 79 -IYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp -EEEECCCHHHHHHHHHHC
T ss_pred -EEEEEChHHHHHHHHHHH
Confidence 445667788888887664
No 11
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=72.14 E-value=12 Score=33.89 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=65.5
Q ss_pred CccEEE--Eecc--chHHHHHHHHHhhcC-------CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCC
Q 023087 5 GFGLLM--YGFG--SKKALLEDFASTALT-------EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPR 73 (287)
Q Consensus 5 GFnlL~--YG~G--SKr~lL~~Fa~~~l~-------~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~ 73 (287)
+-++++ ||-+ -|..+++.+++..-. +..++.+++.. ..+..+++..|...+... .+
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~-----------~~- 116 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN-APNLYTILSLIVRQTGYP-----------IQ- 116 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG-CCSHHHHHHHHHHHHTCC-----------CC-
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC-CCCHHHHHHHHHHHhCCC-----------CC-
Confidence 346777 7753 399999999976543 44677888753 457888888887765221 00
Q ss_pred CCCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCC---ChhHHHHH-HHHhcC------CCeEEEEeec
Q 023087 74 AQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLR---DSETQQHL-GRIAFC------SHIRMIASID 139 (287)
Q Consensus 74 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR---~~~~q~~L-a~La~~------~~I~lIaSiD 139 (287)
....+.+++.+.+..... ....+++|||-++|--.-+ +...+..| ..+... .++.+|++.-
T Consensus 117 ----~~~~~~~~~~~~l~~~l~-~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~ 187 (412)
T 1w5s_A 117 ----VRGAPALDILKALVDNLY-VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVAS 187 (412)
T ss_dssp ----CTTCCHHHHHHHHHHHHH-HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEE
T ss_pred ----CCCCCHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEec
Confidence 011123444444332211 1245889999888764221 22333322 223322 5688887663
No 12
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=70.41 E-value=28 Score=25.67 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=54.9
Q ss_pred hhHHHHHHhhcCHh-HHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 189 AKTAAIVLQSLTPN-AQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 189 ~~g~~~VL~SLt~n-ar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
...+..+++.|... ...|+..|+ . .++.+.+|-+.. =-|..++..+|+.+.+.++|..++ +|..
T Consensus 13 ~~~~~~~~~~l~~~~r~~IL~~L~-~-------~~~~~~ela~~l-----~is~stvs~~L~~L~~~Glv~~~~--~gr~ 77 (106)
T 1r1u_A 13 LERVTEIFKALGDYNRIRIMELLS-V-------SEASVGHISHQL-----NLSQSNVSHQLKLLKSVHLVKAKR--QGQS 77 (106)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHH-H-------CCBCHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEE--ETTE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-h-------CCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEEEE--eCCE
Confidence 34566788888744 445666654 1 346787775443 238999999999999999998877 4554
Q ss_pred EEEEeCCHHHHHHHHHHh
Q 023087 268 CFYIPLASEALEKLLSEI 285 (287)
Q Consensus 268 ~l~Ip~~~~~l~~iLe~l 285 (287)
...-+..+.+.++++.+
T Consensus 78 -~~y~l~~~~~~~~~~~l 94 (106)
T 1r1u_A 78 -MIYSLDDIHVATMLKQA 94 (106)
T ss_dssp -EEEEESSHHHHHHHHHH
T ss_pred -EEEEEChHHHHHHHHHH
Confidence 34444556666666654
No 13
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=66.74 E-value=17 Score=26.27 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=51.1
Q ss_pred hHHHHHHhhcCHhHH-HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 190 KTAAIVLQSLTPNAQ-SVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 190 ~g~~~VL~SLt~nar-~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
..+..+++.|....| .|+..|+ ++++...+|-+.. --|..++..+|+.+.+.++|..++ +|..
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~--------~~~~~~~ela~~l-----~is~~tvs~~L~~L~~~Glv~~~~--~g~~- 74 (98)
T 3jth_A 11 AKAVVLLKAMANERRLQILCMLH--------NQELSVGELCAKL-----QLSQSALSQHLAWLRRDGLVTTRK--EAQT- 74 (98)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHTT--------TSCEEHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEC--CTTC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh--------cCCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEEEE--eCCE-
Confidence 345667777764443 3433332 1457788775554 348899999999999999998876 3543
Q ss_pred EEEeCCHHHHHHHHHHh
Q 023087 269 FYIPLASEALEKLLSEI 285 (287)
Q Consensus 269 l~Ip~~~~~l~~iLe~l 285 (287)
...-++.+.++++++.+
T Consensus 75 ~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 75 VYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp CEEEECCHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHH
Confidence 22333555666666654
No 14
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=66.23 E-value=43 Score=29.09 Aligned_cols=127 Identities=12% Similarity=0.022 Sum_probs=68.3
Q ss_pred cEEEEecc--chHHHHHHHHHhhcCCCcEEEEeccCC----CCCHHHHHHHHHHHHHhhc----------cccCCCCCCC
Q 023087 7 GLLMYGFG--SKKALLEDFASTALTEYSVVVINGYLQ----SINIKQVVITLAEVLWNQC----------KSKRKTPSGN 70 (287)
Q Consensus 7 nlL~YG~G--SKr~lL~~Fa~~~l~~~~~vvvnGy~p----~~~~k~il~~i~~~l~~~~----------~~~~~~~~~~ 70 (287)
.++++|-. -|..+++.|++..- ..++++++... ..+..+++..+.+.+.... ........++
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 109 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN--LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMG 109 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECS
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC--CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecc
Confidence 57788753 29999999997752 34788887642 3456777777766553210 0000000000
Q ss_pred CCCCC--CCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCC-ChhHHHHHHHHhc-CCCeEEEEeec
Q 023087 71 LPRAQ--QPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLR-DSETQQHLGRIAF-CSHIRMIASID 139 (287)
Q Consensus 71 ~~~~~--~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR-~~~~q~~La~La~-~~~I~lIaSiD 139 (287)
..... .......++++++.+.... . .+++|||-+++--.-. .+.....|..+.. .+++++|.+--
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~l~~~~---~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~ 178 (357)
T 2fna_A 110 NEIKFNWNRKDRLSFANLLESFEQAS---K-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGS 178 (357)
T ss_dssp SSEEEC-----CCCHHHHHHHHHHTC---S-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEES
T ss_pred eEEEeccCCcchhhHHHHHHHHHhcC---C-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcC
Confidence 00000 0001235677887776421 1 3888998777652111 2344566666643 46888887653
No 15
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.47 E-value=73 Score=27.86 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=24.0
Q ss_pred CccEEEEec-cc-hHHHHHHHHHhhcC-CCcEEEEec
Q 023087 5 GFGLLMYGF-GS-KKALLEDFASTALT-EYSVVVING 38 (287)
Q Consensus 5 GFnlL~YG~-GS-Kr~lL~~Fa~~~l~-~~~~vvvnG 38 (287)
+-++++||- |+ |..+++.++..... +.+++.+|+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 457889984 55 88888888876544 456777764
No 16
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=56.96 E-value=64 Score=28.15 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=38.9
Q ss_pred ceEEEEEEcCCCcCCCChhHHHHHHHHhcC--CCeEEEEeecCCCCccccCcccccccccEEEEeCCCCCCcccc
Q 023087 100 YFVCVVIHNIDGPGLRDSETQQHLGRIAFC--SHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVE 172 (287)
Q Consensus 100 ~~l~lvIHnIDg~~LR~~~~q~~La~La~~--~~I~lIaSiDhinaplLWd~~~~~~~fnf~~~d~tT~~pY~~E 172 (287)
.+-+++|.++|.-. ....|..|-.+... +++.+|++.+.... .+.... ++|. +-.|.|++.|
T Consensus 105 ~~~vliiDEi~~l~--~~~~~~~L~~~le~~~~~~~iI~~~n~~~~---l~~~l~-sR~~-----~i~~~~~~~~ 168 (324)
T 3u61_B 105 RQKVIVIDEFDRSG--LAESQRHLRSFMEAYSSNCSIIITANNIDG---IIKPLQ-SRCR-----VITFGQPTDE 168 (324)
T ss_dssp CEEEEEEESCCCGG--GHHHHHHHHHHHHHHGGGCEEEEEESSGGG---SCTTHH-HHSE-----EEECCCCCHH
T ss_pred CCeEEEEECCcccC--cHHHHHHHHHHHHhCCCCcEEEEEeCCccc---cCHHHH-hhCc-----EEEeCCCCHH
Confidence 56788899998742 14567766665443 58899999887642 234444 6664 2356666533
No 17
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.73 E-value=31 Score=27.27 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=52.2
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
+|+.-+.|+..|.+. ...++-.+||+..++++---|-.++=..|.-|.+.++|......+|..
T Consensus 20 ~T~qR~~Il~~L~~~------~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~ 82 (145)
T 2fe3_A 20 ITPQRHAILEYLVNS------MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASS 82 (145)
T ss_dssp CCHHHHHHHHHHHHC------SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCC
T ss_pred CCHHHHHHHHHHHhC------CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCce
Confidence 799999999998752 245789999999999887778999999999999999998776655543
No 18
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=54.11 E-value=18 Score=27.81 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEe
Q 023087 204 QSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTR 260 (287)
Q Consensus 204 r~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~ 260 (287)
.++-..|+++.-+++...|++-.+|.+++-.. .++..+.++|.++..-+.|+..
T Consensus 69 ~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~---~~~~~~~~ll~~l~~~g~l~~~ 122 (135)
T 2v9v_A 69 QAVTRALEEFHSRYPLRPGLAREELRSRYFSR---LPARVYQALLEEWSREGRLQLA 122 (135)
T ss_dssp HHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTT---SCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHhCCCccCCCHHHHHHHhccc---CCHHHHHHHHHHHHHCCCEEec
Confidence 46778888898899999999999999888432 2888899999999999999875
No 19
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=53.12 E-value=26 Score=27.21 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=51.2
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEE
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCF 269 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l 269 (287)
+|+.=+.|+..|.+. ...++-.++|+..+++.---|-.++=..|.-|.+.++|......+|...+
T Consensus 9 ~T~qR~~Il~~l~~~------~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 9 STRQRAAISTLLETL------DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHHHHHHHC------CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred CCHHHHHHHHHHHhC------CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 577777888887642 24578999999999987667889999999999999999887766665433
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.87 E-value=53 Score=29.72 Aligned_cols=114 Identities=16% Similarity=0.218 Sum_probs=61.4
Q ss_pred CccEEEEec-cc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCc
Q 023087 5 GFGLLMYGF-GS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRS 82 (287)
Q Consensus 5 GFnlL~YG~-GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
+-++||||- |+ |..+.+.++... ..+++.|++- +++ .. +.+ .....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~--~~~~~~v~~~-------~l~--------~~--------~~g-------~~~~~ 131 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA--NSTFFSVSSS-------DLV--------SK--------WMG-------ESEKL 131 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH--TCEEEEEEHH-------HHH--------SC--------C----------CHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh--CCCEEEeeHH-------HHh--------hh--------hcc-------hHHHH
Confidence 346899974 55 777888888664 4456666542 111 10 000 00112
Q ss_pred HHHHHHHHhcccccCCCceEEEEEEcCCCcCCCC--------hh-HHHHHHHHh----cCCCeEEEEeecCCCCccccCc
Q 023087 83 MDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRD--------SE-TQQHLGRIA----FCSHIRMIASIDHVNAPLLWDK 149 (287)
Q Consensus 83 ~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~--------~~-~q~~La~La----~~~~I~lIaSiDhinaplLWd~ 149 (287)
+..+++.... ..+-+|+|..||.-.-.. .+ ...+|..|- ..+++.+||+...+ -..|.
T Consensus 132 ~~~~f~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~---~~ld~ 202 (355)
T 2qp9_X 132 VKQLFAMARE------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP---WQLDS 202 (355)
T ss_dssp HHHHHHHHHH------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCG---GGSCH
T ss_pred HHHHHHHHHH------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCc---ccCCH
Confidence 2334443332 346788999999754432 11 233444443 24679999998554 45577
Q ss_pred ccccccccEEE
Q 023087 150 KMVHTQFNWHW 160 (287)
Q Consensus 150 ~~~~~~fnf~~ 160 (287)
... ++|....
T Consensus 203 al~-rRf~~~i 212 (355)
T 2qp9_X 203 AIR-RRFERRI 212 (355)
T ss_dssp HHH-HTCCEEE
T ss_pred HHH-cccCEEE
Confidence 776 6786544
No 21
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=50.12 E-value=36 Score=27.08 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=51.3
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
+|+.=+.|+..|.+. ...++-.+||+..++++---|-.++=-.|.-|.+.++|......+|..
T Consensus 25 ~T~qR~~IL~~l~~~------~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~ 87 (150)
T 2xig_A 25 NSKQREEVVSVLYRS------GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGR 87 (150)
T ss_dssp CHHHHHHHHHHHHHC------SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEE
T ss_pred CCHHHHHHHHHHHhC------CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCce
Confidence 688888888888643 235789999999999887778899999999999999998876656643
No 22
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=50.00 E-value=40 Score=23.82 Aligned_cols=80 Identities=20% Similarity=0.387 Sum_probs=49.7
Q ss_pred hHHHHHHhhcC-HhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 190 KTAAIVLQSLT-PNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 190 ~g~~~VL~SLt-~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
+.+..+++.|. ++...|+..|. +.++++..+|-+.. --|..++..+|..+.+.++|...++ |...
T Consensus 12 ~~~~~~~~~l~~~~~~~il~~l~-------~~~~~s~~ela~~l-----~is~~tvs~~l~~L~~~glv~~~~~--~r~~ 77 (99)
T 3cuo_A 12 EQAAALLKAMSHPKRLLILCMLS-------GSPGTSAGELTRIT-----GLSASATSQHLARMRDEGLIDSQRD--AQRI 77 (99)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHT-------TCCSEEHHHHHHHH-----CCCHHHHHHHHHHHHHTTSEEEEEC--SSCE
T ss_pred HHHHHHHHHhCChHHHHHHHHHH-------hCCCcCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCEEEEec--CCEE
Confidence 34555666665 45555555552 12467888775444 3489999999999999999988763 4432
Q ss_pred EEEeCCHHHHHHHHHH
Q 023087 269 FYIPLASEALEKLLSE 284 (287)
Q Consensus 269 l~Ip~~~~~l~~iLe~ 284 (287)
+ .-+..+.++++++.
T Consensus 78 ~-y~l~~~~~~~l~~~ 92 (99)
T 3cuo_A 78 L-YSIKNEAVNAIIAT 92 (99)
T ss_dssp E-EEECCHHHHHHHHH
T ss_pred E-EEEChHHHHHHHHH
Confidence 2 23334444444443
No 23
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=48.48 E-value=39 Score=25.68 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=50.1
Q ss_pred hHHHHHHhhcC-HhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 190 KTAAIVLQSLT-PNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 190 ~g~~~VL~SLt-~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
..+..+++.|. ++...|+..|.+ .+++.+.+|-+.. =-|..++..+|+.+.+.++|...+ +|..
T Consensus 30 ~~~~~~~~al~~~~rl~IL~~L~~-------~~~~s~~eLa~~l-----~is~stvs~~L~~L~~~Glv~~~~--~gr~- 94 (122)
T 1u2w_A 30 SGVSQILKAIADENRAKITYALCQ-------DEELCVCDIANIL-----GVTIANASHHLRTLYKQGVVNFRK--EGKL- 94 (122)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHH-------SSCEEHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEC------C-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-------CCCcCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEEEE--ECCE-
Confidence 44556677764 344467766653 2456777775443 348999999999999999998765 3443
Q ss_pred EEEeCCHHHHHHHHHHh
Q 023087 269 FYIPLASEALEKLLSEI 285 (287)
Q Consensus 269 l~Ip~~~~~l~~iLe~l 285 (287)
...-+..+.++++++.+
T Consensus 95 ~~y~l~~~~~~~~~~~l 111 (122)
T 1u2w_A 95 ALYSLGDEHIRQIMMIA 111 (122)
T ss_dssp CEEEESCHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHH
Confidence 22333455666666554
No 24
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=48.03 E-value=40 Score=25.02 Aligned_cols=80 Identities=19% Similarity=0.357 Sum_probs=52.9
Q ss_pred hHHHHHHhhcCHhHH-HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 190 KTAAIVLQSLTPNAQ-SVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 190 ~g~~~VL~SLt~nar-~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
..+..+++.|....| +|+..| . .+++...+|-+.. =-+..++..+|+.+.+-++|..++ +|...
T Consensus 13 ~~~~~~~~al~~~~r~~IL~~L-----~---~~~~s~~eLa~~l-----gis~stvs~~L~~L~~~GlV~~~~--~gr~~ 77 (108)
T 2kko_A 13 DQVARVGKALANGRRLQILDLL-----A---QGERAVEAIATAT-----GMNLTTASANLQALKSGGLVEARR--EGTRQ 77 (108)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHH-----T---TCCEEHHHHHHHH-----TCCHHHHHHHHHHHHHHTSEEEEE--ETTEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHH-----H---cCCcCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEEEE--eCCEE
Confidence 455667888875544 444443 1 1456777775443 348899999999999999998876 45543
Q ss_pred EEEeCCHHHHHHHHHHh
Q 023087 269 FYIPLASEALEKLLSEI 285 (287)
Q Consensus 269 l~Ip~~~~~l~~iLe~l 285 (287)
+ .-+..+.+.++++.+
T Consensus 78 ~-y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 78 Y-YRIAGEDVARLFALV 93 (108)
T ss_dssp E-EEESCHHHHHHHHHH
T ss_pred E-EEEChHHHHHHHHHH
Confidence 3 333445677777665
No 25
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.65 E-value=36 Score=26.52 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=50.7
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
+|+.-+.|+..|.+. +...++-.++|+..++++---|-.++=..|.-|.+.++|......+|..
T Consensus 16 ~T~qR~~Il~~L~~~-----~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~ 79 (136)
T 1mzb_A 16 VTLPRVKILQMLDSA-----EQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHA 79 (136)
T ss_dssp CCHHHHHHHHHHHCC------CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSC
T ss_pred CCHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCce
Confidence 788888888888532 1135789999999999887778899999999999999998776545543
No 26
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=46.55 E-value=52 Score=28.52 Aligned_cols=123 Identities=14% Similarity=0.041 Sum_probs=68.7
Q ss_pred CccEEEEecc--chHHHHHHHHHhhcCCCcEEEEeccCC-----CCCHHHHHHHHHHHHHhh------ccccCCCCCCCC
Q 023087 5 GFGLLMYGFG--SKKALLEDFASTALTEYSVVVINGYLQ-----SINIKQVVITLAEVLWNQ------CKSKRKTPSGNL 71 (287)
Q Consensus 5 GFnlL~YG~G--SKr~lL~~Fa~~~l~~~~~vvvnGy~p-----~~~~k~il~~i~~~l~~~------~~~~~~~~~~~~ 71 (287)
|-.++++|-. -|..+++.|++.. .++.+|+... ..+..+++..+...+... .+ .. ...++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~-~~~~~~ 104 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER----PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFK-IS-LNLKFL 104 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS----SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHT-CC-CCCGGG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc----CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhce-eE-EEecce
Confidence 4568888754 3999999999774 2778886542 346777777776544210 00 00 000000
Q ss_pred CCCCCCCCCCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCC----CChhHHHHHHHHhc-CCCeEEEEee
Q 023087 72 PRAQQPFNSRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGL----RDSETQQHLGRIAF-CSHIRMIASI 138 (287)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~L----R~~~~q~~La~La~-~~~I~lIaSi 138 (287)
..+.....++++++.+...... ..+++|||-+++-..- ..+.....|..+.. .+++++|.+-
T Consensus 105 ---~~~~~~~~~~~~~~~l~~~~~~--~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g 171 (350)
T 2qen_A 105 ---TLEPRKLSLREVFRELNDLGEE--LGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTG 171 (350)
T ss_dssp ---TSCGGGCCHHHHHHHHHHHHHH--HSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ---eeccccchHHHHHHHHHHHHhc--cCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEEC
Confidence 0001123566777776542211 1278999888775321 13455666666643 4789988764
No 27
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=45.28 E-value=1.5e+02 Score=25.68 Aligned_cols=113 Identities=15% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCccEEEEec-cc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCC
Q 023087 4 CGFGLLMYGF-GS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSR 81 (287)
Q Consensus 4 ~GFnlL~YG~-GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
.+-++||||- |+ |..+.+.++... ..+.+.|||- ++. ....+. ...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~i~v~~~-------~l~----~~~~g~-------------------~~~ 95 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGP-------ELL----TMWFGE-------------------SEA 95 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT--TCEEEEECHH-------HHH----HHHHTT-------------------CTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh--CCCEEEEEhH-------HHH----hhhcCc-------------------hHH
Confidence 4567899984 54 777777777553 3566767652 222 222221 112
Q ss_pred cHHHHHHHHhcccccCCCceEEEEEEcCCCcC------------CCChhHHHHHHHHh---cCCCeEEEEeecCCCCccc
Q 023087 82 SMDDLFAFLDGSELKENDYFVCVVIHNIDGPG------------LRDSETQQHLGRIA---FCSHIRMIASIDHVNAPLL 146 (287)
Q Consensus 82 ~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~------------LR~~~~q~~La~La---~~~~I~lIaSiDhinaplL 146 (287)
.+..+++.... ..|-+|+|.+||... ....-...+|..|- ...++.+||+..... .
T Consensus 96 ~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~---~ 166 (301)
T 3cf0_A 96 NVREIFDKARQ------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD---I 166 (301)
T ss_dssp HHHHHHHHHHH------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG---G
T ss_pred HHHHHHHHHHh------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc---c
Confidence 34455555442 346788999999521 11222344566554 345899999996542 2
Q ss_pred cCcccccc--cccE
Q 023087 147 WDKKMVHT--QFNW 158 (287)
Q Consensus 147 Wd~~~~~~--~fnf 158 (287)
-|.... + +|..
T Consensus 167 ld~al~-r~gRf~~ 179 (301)
T 3cf0_A 167 IDPAIL-RPGRLDQ 179 (301)
T ss_dssp SCGGGG-STTSSCE
T ss_pred cChHHh-cCCccce
Confidence 355554 4 5653
No 28
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=43.00 E-value=82 Score=23.22 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=52.6
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLAS 275 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~ 275 (287)
.||+.+..+...|.+. ++++..+|.+.+..+ .--+..++..+|..+.+.++|...++ |....++++..
T Consensus 7 ~lt~~~~~vL~~l~~~-------~~~t~~ela~~l~~~-~~~s~~tv~~~l~~L~~~Glv~r~~~--~rr~~~~~lT~ 74 (123)
T 1okr_A 7 EISSAEWEVMNIIWMK-------KYASANNIIEEIQMQ-KDWSPKTIRTLITRLYKKGFIDRKKD--NKIFQYYSLVE 74 (123)
T ss_dssp CCCHHHHHHHHHHHHH-------SSEEHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHTSEEEEEE--TTEEEEEESSC
T ss_pred cCCHHHHHHHHHHHhC-------CCcCHHHHHHHHhcc-CCCcHhhHHHHHHHHHHCCCeEEEec--CCeEEEEEecC
Confidence 4788888888888753 468899998877653 11368999999999999999988775 66767787753
No 29
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=42.62 E-value=93 Score=22.55 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=42.2
Q ss_pred hHHHHHHhhcC-HhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeC
Q 023087 190 KTAAIVLQSLT-PNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRH 262 (287)
Q Consensus 190 ~g~~~VL~SLt-~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~ 262 (287)
..+..+++.|. ++...|+..| .. +++...+|-+.. --+..++..+|+.+.+.++|...++
T Consensus 9 ~~~~~~~~~l~~~~r~~IL~~L-~~-------~~~~~~ela~~l-----~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 9 AELASVFAALSDETRWEILTEL-GR-------ADQSASSLATRL-----PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HH-------SCBCHHHHHHHS-----SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhCChHHHHHHHHH-Hc-------CCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 34566788887 4445566665 22 346777764433 3589999999999999999987764
No 30
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=42.06 E-value=64 Score=25.44 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
+|+.-+.|+..|.+.. .++-.++|+..++++---|-.++-.-|.-|.+.++|......+|..
T Consensus 17 ~T~qR~~Il~~l~~~~-------h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~ 78 (145)
T 3eyy_A 17 LTPQRQLVLEAVDTLE-------HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAP 78 (145)
T ss_dssp CCHHHHHHHHHHHHHS-------SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCE
T ss_pred cCHHHHHHHHHHHhcC-------CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCce
Confidence 6888888888887651 4678999999998877678889999999999999998776545543
No 31
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=40.07 E-value=56 Score=23.00 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=46.7
Q ss_pred CHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCC-CCceEEEEeCCHH--
Q 023087 200 TPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHS-DGQDCFYIPLASE-- 276 (287)
Q Consensus 200 t~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~-~G~e~l~Ip~~~~-- 276 (287)
++....|+..|.+. +++++.+|-+. +--+..++..+|+.+.+.++|...++. +|. ...+-++.+
T Consensus 15 ~~~~~~iL~~L~~~-------~~~~~~ela~~-----l~is~~tvs~~l~~L~~~gli~~~~~~~~~r-~~~~~lt~~g~ 81 (100)
T 1ub9_A 15 NPVRLGIMIFLLPR-------RKAPFSQIQKV-----LDLTPGNLDSHIRVLERNGLVKTYKVIADRP-RTVVEITDFGM 81 (100)
T ss_dssp SHHHHHHHHHHHHH-------SEEEHHHHHHH-----TTCCHHHHHHHHHHHHHTTSEEEEEECSSSC-EEEEEECHHHH
T ss_pred ChHHHHHHHHHHhc-------CCcCHHHHHHH-----HCcCHHHHHHHHHHHHHCCCEEEEecCCCcc-eEEEEECHHHH
Confidence 56677777777653 34677776443 345889999999999999999977644 333 334444433
Q ss_pred -HHHHHHHH
Q 023087 277 -ALEKLLSE 284 (287)
Q Consensus 277 -~l~~iLe~ 284 (287)
.++++++.
T Consensus 82 ~~~~~~~~~ 90 (100)
T 1ub9_A 82 EEAKRFLSS 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 34555444
No 32
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=39.01 E-value=47 Score=25.27 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHH
Q 023087 221 EGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSE 284 (287)
Q Consensus 221 ~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~ 284 (287)
..++.++| |.+ +--|...++..|..+.+.++|.++++..|.=.+.-|...-.+.++++-
T Consensus 25 ~~~s~~el---a~~--~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~itl~di~~~ 83 (129)
T 2y75_A 25 GPTSLKSI---AQT--NNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDIIRV 83 (129)
T ss_dssp CCBCHHHH---HHH--TTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCBHHHHHHH
T ss_pred CcCCHHHH---HHH--HCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHHCcHHHHHHH
Confidence 44666665 222 456899999999999999999998876665545555433334444443
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=39.00 E-value=1.6e+02 Score=24.23 Aligned_cols=58 Identities=22% Similarity=0.432 Sum_probs=28.9
Q ss_pred ceEEEEEEcCCCcCCC---------ChhHHHHHHHH----h---cCCCeEEEEeecCCCCccccCcccccc--cccEEEE
Q 023087 100 YFVCVVIHNIDGPGLR---------DSETQQHLGRI----A---FCSHIRMIASIDHVNAPLLWDKKMVHT--QFNWHWY 161 (287)
Q Consensus 100 ~~l~lvIHnIDg~~LR---------~~~~q~~La~L----a---~~~~I~lIaSiDhinaplLWd~~~~~~--~fnf~~~ 161 (287)
.+-+|+|..||.-.-+ +...|..|..| . ..+++.+||+..+.. ..|.... + +|....+
T Consensus 98 ~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~---~ld~~l~-~~~R~~~~i~ 173 (262)
T 2qz4_A 98 APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRAD---ILDGALM-RPGRLDRHVF 173 (262)
T ss_dssp CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGG---GGGSGGG-STTSCCEEEE
T ss_pred CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChh---hcCHHHh-cCCcCCeEEE
Confidence 3678899999975322 12233333333 2 245799999986543 3355554 4 7754433
No 34
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=37.57 E-value=96 Score=21.34 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=50.1
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeC
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPL 273 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~ 273 (287)
.||+....+...|.+ .++++..+|.+.+..+ ---+..++...|.-+.+.++|...+ +|..+++-|.
T Consensus 6 ~lt~~e~~vL~~L~~-------~~~~t~~ei~~~l~~~-~~~s~~Tv~~~l~rL~~kGlv~r~~--~gr~~~y~~~ 71 (82)
T 1p6r_A 6 QISDAELEVMKVIWK-------HSSINTNEVIKELSKT-STWSPKTIQTMLLRLIKKGALNHHK--EGRVFVYTPN 71 (82)
T ss_dssp CCCHHHHHHHHHHHT-------SSSEEHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTSEEEEE--ETTEEEEEES
T ss_pred CCCHHHHHHHHHHHc-------CCCCCHHHHHHHHhhc-CCccHHHHHHHHHHHHHCCCeEEEe--cCCEEEEEee
Confidence 478888888888754 2468899999888754 1127899999999999999998776 3555566554
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=37.46 E-value=2.5e+02 Score=25.99 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=60.9
Q ss_pred ccEEEEec-cc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCcH
Q 023087 6 FGLLMYGF-GS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSM 83 (287)
Q Consensus 6 FnlL~YG~-GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
-++||||- |+ |..+.+.++.. +...+++.|++-. ++. ...+ . ....+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~-~~~~~~~~v~~~~-------l~~----~~~g-----------~--------~~~~~ 216 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE-ANNSTFFSISSSD-------LVS----KWLG-----------E--------SEKLV 216 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-CCSSEEEEECCC---------------------------------------CCCTH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-cCCCCEEEEeHHH-------HHh----hhcc-----------h--------HHHHH
Confidence 46888874 44 77777777755 3345667777632 111 0000 0 11235
Q ss_pred HHHHHHHhcccccCCCceEEEEEEcCCCcCC-CC----hhHHHHHHHH----h----cCCCeEEEEeecCCCCccccCcc
Q 023087 84 DDLFAFLDGSELKENDYFVCVVIHNIDGPGL-RD----SETQQHLGRI----A----FCSHIRMIASIDHVNAPLLWDKK 150 (287)
Q Consensus 84 ~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~L-R~----~~~q~~La~L----a----~~~~I~lIaSiDhinaplLWd~~ 150 (287)
..+++.... ..+-+|+|..||...- |. .....++.+| - ..++|.+||+... |-..|..
T Consensus 217 ~~~f~~a~~------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~---~~~ld~a 287 (444)
T 2zan_A 217 KNLFQLARE------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI---PWVLDSA 287 (444)
T ss_dssp HHHHHHHHH------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC---GGGSCHH
T ss_pred HHHHHHHHH------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC---ccccCHH
Confidence 556665542 3457888999996422 11 1122333333 2 2467999999844 4456777
Q ss_pred cccccccE
Q 023087 151 MVHTQFNW 158 (287)
Q Consensus 151 ~~~~~fnf 158 (287)
.. ++|..
T Consensus 288 l~-rRf~~ 294 (444)
T 2zan_A 288 IR-RRFEK 294 (444)
T ss_dssp HH-TTCCE
T ss_pred HH-hhcce
Confidence 77 67753
No 36
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=36.91 E-value=87 Score=25.05 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=19.6
Q ss_pred ccEEEEec-cc-hHHHHHHHHHhhcCC-CcEEEEe
Q 023087 6 FGLLMYGF-GS-KKALLEDFASTALTE-YSVVVIN 37 (287)
Q Consensus 6 FnlL~YG~-GS-Kr~lL~~Fa~~~l~~-~~~vvvn 37 (287)
-++++||- |+ |..++..++...... .+++.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 57788873 44 777777777665543 3455454
No 37
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.41 E-value=63 Score=37.90 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=77.1
Q ss_pred ccCCccEEEEe-ccc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 023087 2 LRCGFGLLMYG-FGS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFN 79 (287)
Q Consensus 2 L~~GFnlL~YG-~GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
+..|.++||+| -|+ |.-+.++++.+ +.+..++.||. ....+..++...+...+ .. .+.+. +.. +
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~l~~-~~~~~~~~inf-sa~ts~~~~~~~i~~~~-~~---~~~~~------g~~-~- 1329 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNALRN-SSLYDVVGINF-SKDTTTEHILSALHRHT-NY---VTTSK------GLT-L- 1329 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHHHHS-CSSCEEEEEEC-CTTCCHHHHHHHHHHHB-CC---EEETT------TEE-E-
T ss_pred HHCCCeEEEECCCCCCHHHHHHHHHhc-CCCCceEEEEe-ecCCCHHHHHHHHHHHh-hh---ccccC------Ccc-c-
Confidence 45789999999 465 66666677755 34456666764 33455555444443221 10 00000 000 0
Q ss_pred CCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChh---HHHHHHHHhcC--------------CCeEEEEeecCCC
Q 023087 80 SRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSE---TQQHLGRIAFC--------------SHIRMIASIDHVN 142 (287)
Q Consensus 80 ~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~---~q~~La~La~~--------------~~I~lIaSiDhin 142 (287)
...+...++++.|-.||.|..-... ..++|.++... .+|.+||++-+..
T Consensus 1330 --------------~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~ 1395 (2695)
T 4akg_A 1330 --------------LPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPT 1395 (2695)
T ss_dssp --------------EEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTT
T ss_pred --------------cCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCc
Confidence 0011345789999999998775433 45566666432 4689999997764
Q ss_pred ----CccccCcccccccccEEEEeCCC
Q 023087 143 ----APLLWDKKMVHTQFNWHWYHVPT 165 (287)
Q Consensus 143 ----aplLWd~~~~~~~fnf~~~d~tT 165 (287)
.++ |.... ++|+.++.+..+
T Consensus 1396 ~gGR~~l--~~rll-Rrf~vi~i~~P~ 1419 (2695)
T 4akg_A 1396 DPGRIPM--SERFT-RHAAILYLGYPS 1419 (2695)
T ss_dssp STTCCCC--CHHHH-TTEEEEECCCCT
T ss_pred cCCCccC--Chhhh-heeeEEEeCCCC
Confidence 234 77777 888887665543
No 38
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.22 E-value=34 Score=26.92 Aligned_cols=64 Identities=20% Similarity=0.149 Sum_probs=47.6
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
+|+.-+.|+..|.+. ...++-.++|+..++++---|-.++=..|.-|.+.++|......+|...
T Consensus 12 ~T~qR~~Il~~L~~~------~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~ 75 (139)
T 3mwm_A 12 ATRQRAAVSAALQEV------EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESV 75 (139)
T ss_dssp HHHHHHHHHHHHTTC------SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEE
T ss_pred cCHHHHHHHHHHHhC------CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceE
Confidence 466666666666432 2357889999999988776688889899999999999987765555443
No 39
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.40 E-value=42 Score=26.72 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=49.3
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCce
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQD 267 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e 267 (287)
+|+.-+.|+..|.+. +...++-.+||+..++++---|-.++=..|.-|.+.++|......+|..
T Consensus 15 ~T~qR~~Il~~L~~~-----~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~ 78 (150)
T 2w57_A 15 VTLPRLKILEVLQQP-----ECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKS 78 (150)
T ss_dssp CCHHHHHHHHHHTSG-----GGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCE
T ss_pred CCHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCce
Confidence 788888888888532 1134788999999999877678889999999999999998776544443
No 40
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=35.16 E-value=1.2e+02 Score=21.38 Aligned_cols=60 Identities=17% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCC
Q 023087 193 AIVLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHS 263 (287)
Q Consensus 193 ~~VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~ 263 (287)
......||+..+.+...+... .++++..+|-+.. --|..++...|..+.+.++|...++.
T Consensus 13 ~~~~~~l~~~~~~~l~~l~~~------~~~~t~~ela~~l-----~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 13 IRCCYKITDTDVAVLLKMVEI------EKPITSEELADIF-----KLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH------CSCEEHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHhhcCCHHHHHHHHHHHHc------CCCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 344568899888877666542 2567888876543 34889999999999999999887653
No 41
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=35.13 E-value=1.4e+02 Score=22.48 Aligned_cols=80 Identities=18% Similarity=0.294 Sum_probs=51.1
Q ss_pred hHHHHHHhhcCHhH-HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceE
Q 023087 190 KTAAIVLQSLTPNA-QSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDC 268 (287)
Q Consensus 190 ~g~~~VL~SLt~na-r~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~ 268 (287)
..+..+++.|.... .+|+..|+ . +++.+.+|-+.. =-|..++..+|+.+.+.++|..+++ |...
T Consensus 34 ~~~~~~~kaL~~~~rl~IL~~L~-----~---~~~s~~ela~~l-----gis~stvs~~L~~Le~~Glv~~~~~--gr~~ 98 (122)
T 1r1t_A 34 QSLAEFFAVLADPNRLRLLSLLA-----R---SELCVGDLAQAI-----GVSESAVSHQLRSLRNLRLVSYRKQ--GRHV 98 (122)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHT-----T---CCBCHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEEE--TTEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----c---CCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCeEEEEe--CCEE
Confidence 45567777776443 34555542 1 346676654333 3488999999999999999998774 5443
Q ss_pred EEEeCCHHHHHHHHHHh
Q 023087 269 FYIPLASEALEKLLSEI 285 (287)
Q Consensus 269 l~Ip~~~~~l~~iLe~l 285 (287)
..-+..+.+.++++.+
T Consensus 99 -~y~l~~~~l~~~~~~l 114 (122)
T 1r1t_A 99 -YYQLQDHHIVALYQNA 114 (122)
T ss_dssp -EEEESSHHHHHHHHHH
T ss_pred -EEEEChHHHHHHHHHH
Confidence 3334455666666554
No 42
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=34.70 E-value=71 Score=23.79 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=57.2
Q ss_pred HHhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH-hhccHHHHHHHhhhhcccceEEEeeCCCCceEEEE-e
Q 023087 195 VLQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERF-LVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYI-P 272 (287)
Q Consensus 195 VL~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~f-i~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~I-p 272 (287)
+.+.++.|..-|..+|+... ...+..++-+.-.++| +--++.++=..|+.+.+-++|....+ .+..++.| |
T Consensus 3 ~~~~~~~~~~~IL~lL~~~~------~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~-~~rk~Y~iT~ 75 (99)
T 2co5_A 3 IRKYMRINYYIILKVLVING------SRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEA-PDGKVLFLTE 75 (99)
T ss_dssp --CCCHHHHHHHHHHHHHTT------TEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECC-TTSCEEEECH
T ss_pred hhHhhcccHHHHHHHHHhcC------CCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeC-CCcEEEEECH
Confidence 45677778877777776531 2334445555555556 46789999999999999999998773 34445555 5
Q ss_pred CCHHHHHHHHHHh
Q 023087 273 LASEALEKLLSEI 285 (287)
Q Consensus 273 ~~~~~l~~iLe~l 285 (287)
-+++++++.+++.
T Consensus 76 ~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 76 KGMKEFEELHEFF 88 (99)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 6777888877764
No 43
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=34.62 E-value=88 Score=23.25 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=48.7
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLAS 275 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~ 275 (287)
-||+.+-.++..|... +..++...+|-+. +--+..++...+..+.+.++|...++.++.....|.++.
T Consensus 31 ~lt~~~~~iL~~l~~~-----~~~~~~~~ela~~-----l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRN-----KNKEVLQRDLESE-----FSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp TCCHHHHHHHHHHHHT-----TTSCCBHHHHHHH-----HTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred CCCHHHHHHHHHHHHC-----CCCCcCHHHHHHH-----HCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 4788888888887654 2237888888443 345889999999999999999988765444334555543
No 44
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.20 E-value=1.1e+02 Score=24.74 Aligned_cols=60 Identities=10% Similarity=0.127 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHHh
Q 023087 221 EGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285 (287)
Q Consensus 221 ~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~l 285 (287)
..++-+++ |. -+-.|...++..|..+...++|.++++.+|.=.|.-|-+.=.|-+|++-+
T Consensus 43 ~~~s~~eI---A~--~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~eItL~dVi~av 102 (159)
T 3lwf_A 43 GPISLRSI---AQ--DKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTL 102 (159)
T ss_dssp CCBCHHHH---HH--HHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTTCBHHHHHHHH
T ss_pred CCcCHHHH---HH--HHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHHCCHHHHHHHH
Confidence 34676666 22 35679999999999999999999999998876677776665666666544
No 45
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=33.61 E-value=1.2e+02 Score=23.43 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=55.9
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEee-----CCCCc---eEE
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRR-----HSDGQ---DCF 269 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k-----~~~G~---e~l 269 (287)
.|++..+.|...|.+. ..+++.+|=+.. =-|+.+.+..|+.+.+.++|.... ..-|. -++
T Consensus 6 ~ld~~d~~il~~L~~~-------~~~s~~ela~~l-----g~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v 73 (151)
T 2dbb_A 6 KLDRVDMQLVKILSEN-------SRLTYRELADIL-----NTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVL 73 (151)
T ss_dssp CCCHHHHHHHHHHHHC-------TTCCHHHHHHHT-----TSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEE
T ss_pred hCCHHHHHHHHHHHHc-------CCCCHHHHHHHH-----CcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEE
Confidence 3778888887776432 457888874433 348999999999999999997432 12353 478
Q ss_pred EEeCCHHHHHHHHHHhh
Q 023087 270 YIPLASEALEKLLSEIN 286 (287)
Q Consensus 270 ~Ip~~~~~l~~iLe~l~ 286 (287)
+|-.+.+..+++.+.+.
T Consensus 74 ~v~~~~~~~~~~~~~l~ 90 (151)
T 2dbb_A 74 IKSKVPSDADKVISEIS 90 (151)
T ss_dssp EEESSHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 88889888888887764
No 46
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.74 E-value=76 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=46.8
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH--HhhccHHHHHHHhhhhcccceEEEeeCCCC
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRER--FLVSSQVTLNSHLTEFKDHELVKTRRHSDG 265 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~--fi~sse~~lr~~L~EF~DH~li~~~k~~~G 265 (287)
-+|+.=+.|+..|.+. ..-++-.++|+..+++ .---|-.++=.-|.-|.+.++|......+|
T Consensus 30 r~T~qR~~IL~~L~~~------~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~ 93 (162)
T 4ets_A 30 KYTKQREVLLKTLYHS------DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSA 93 (162)
T ss_dssp CCCHHHHHHHHHHHSC------CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC----
T ss_pred CCCHHHHHHHHHHHhC------CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3688888888887543 2457899999999998 666688888889999999999987644344
No 47
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.44 E-value=57 Score=31.14 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=57.8
Q ss_pred ccEEEEec-cc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCcH
Q 023087 6 FGLLMYGF-GS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNSRSM 83 (287)
Q Consensus 6 FnlL~YG~-GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
-++||||- |+ |..+.+.++... +++++.+|+-. ..-++++......... . . ++
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l--~~~~i~in~s~--~~~~~~~~~~i~~~~~------~----~-----------~~ 132 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL--GYDILEQNASD--VRSKTLLNAGVKNALD------N----M-----------SV 132 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT--TCEEEEECTTS--CCCHHHHHHTGGGGTT------B----C-----------CS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc--CCCEEEEeCCC--cchHHHHHHHHHHHhc------c----c-----------cH
Confidence 47999985 43 899999998775 56778888743 4444433322111100 0 0 00
Q ss_pred HHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCc
Q 023087 84 DDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAP 144 (287)
Q Consensus 84 ~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinap 144 (287)
..+++..... ......+.+|+|..+|.-.-........|..+..-+++.+|+.......+
T Consensus 133 ~~~~~~~~~~-~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~ 192 (516)
T 1sxj_A 133 VGYFKHNEEA-QNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLP 192 (516)
T ss_dssp TTTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSS
T ss_pred HHHHhhhhhh-hhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCc
Confidence 0000000000 01134567889999988654333333455555544555566655544433
No 48
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=32.44 E-value=3.1e+02 Score=25.42 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=83.9
Q ss_pred ccEEEEe-ccc-hHHHHHHHHHhhcC---CCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC
Q 023087 6 FGLLMYG-FGS-KKALLEDFASTALT---EYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFNS 80 (287)
Q Consensus 6 FnlL~YG-~GS-Kr~lL~~Fa~~~l~---~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
-+++||| -|+ |..+++.++..... +.+++.+++- ++...+...+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-------~~~~~~~~~~~~---------------------- 181 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-------KFLNDLVDSMKE---------------------- 181 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-------HHHHHHHHHHHT----------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-------HHHHHHHHHHHc----------------------
Confidence 4688887 354 88888888765532 4456666542 233333333211
Q ss_pred CcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHH----hcCCCeEEEEeecCCCCcc-ccCccccccc
Q 023087 81 RSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRI----AFCSHIRMIASIDHVNAPL-LWDKKMVHTQ 155 (287)
Q Consensus 81 ~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~L----a~~~~I~lIaSiDhinapl-LWd~~~~~~~ 155 (287)
...+.+.+... ..+-+|+|..||.-.- .+..|..|-.+ ... +..+|.+.+..-..+ -.+.... .+
T Consensus 182 ~~~~~~~~~~~-------~~~~vL~IDEi~~l~~-~~~~q~~l~~~l~~l~~~-~~~iIitt~~~~~~l~~l~~~L~-sR 251 (440)
T 2z4s_A 182 GKLNEFREKYR-------KKVDILLIDDVQFLIG-KTGVQTELFHTFNELHDS-GKQIVICSDREPQKLSEFQDRLV-SR 251 (440)
T ss_dssp TCHHHHHHHHT-------TTCSEEEEECGGGGSS-CHHHHHHHHHHHHHHHTT-TCEEEEEESSCGGGCSSCCHHHH-HH
T ss_pred ccHHHHHHHhc-------CCCCEEEEeCcccccC-ChHHHHHHHHHHHHHHHC-CCeEEEEECCCHHHHHHHHHHHH-hh
Confidence 01222222222 1345788888887443 22455544333 332 345666665532221 1244444 66
Q ss_pred ccEEEEeCCCCCCcccccccc--hhhhhcCCccchhhHHHHHHhhcCHhHHHHHHHHHH
Q 023087 156 FNWHWYHVPTFAPYKVEGMFF--PLILAHGSSAQTAKTAAIVLQSLTPNAQSVFKILAE 212 (287)
Q Consensus 156 fnf~~~d~tT~~pY~~E~~~~--~~l~~~~~~~~~~~g~~~VL~SLt~nar~lf~lLa~ 212 (287)
|.| --+-.+.|++.|.... ...+...+-....+.+.++.+.-+-|.|.+-..|-.
T Consensus 252 ~~~--g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~ 308 (440)
T 2z4s_A 252 FQM--GLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_dssp HHS--SBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccC--CeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 764 2345677777765321 111111111233455667777777788887776644
No 49
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=32.41 E-value=50 Score=24.86 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=47.7
Q ss_pred HHhhcCH-hHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeC
Q 023087 195 VLQSLTP-NAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPL 273 (287)
Q Consensus 195 VL~SLt~-nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~ 273 (287)
+++.|.. ...+|+..|.. .++...+|-+. +=-|..++..+|+.+.+.++|..++ +|... ..-+
T Consensus 14 ~~~aL~~~~r~~IL~~L~~--------~~~~~~eLa~~-----lgis~stvs~~L~~L~~~GlV~~~~--~gr~~-~y~l 77 (118)
T 2jsc_A 14 LGRALADPTRCRILVALLD--------GVCYPGQLAAH-----LGLTRSNVSNHLSCLRGCGLVVATY--EGRQV-RYAL 77 (118)
T ss_dssp HHHHHSSHHHHHHHHHHHT--------TCCSTTTHHHH-----HSSCHHHHHHHHHHHTTTTSEEEEE--CSSSE-EEEE
T ss_pred HHHHhCCHHHHHHHHHHHc--------CCCCHHHHHHH-----HCcCHHHHHHHHHHHHHCCceEEEE--ECCEE-EEEE
Confidence 4555543 34456655531 12455555333 2348999999999999999998876 35543 3334
Q ss_pred CHHHHHHHHHHh
Q 023087 274 ASEALEKLLSEI 285 (287)
Q Consensus 274 ~~~~l~~iLe~l 285 (287)
+.+.++++++.+
T Consensus 78 ~~~~~~~~~~~l 89 (118)
T 2jsc_A 78 ADSHLARALGEL 89 (118)
T ss_dssp SSHHHHHHHHHC
T ss_pred ChHHHHHHHHHH
Confidence 567788888765
No 50
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=29.17 E-value=21 Score=28.30 Aligned_cols=59 Identities=10% Similarity=0.213 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHHh
Q 023087 222 GMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEI 285 (287)
Q Consensus 222 gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~l 285 (287)
.++-+++ | +-+--|...++..|..+...++|.++++.+|.=.|.-|-+.=.|-+|++-+
T Consensus 28 ~~s~~~I---A--~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~Itl~dV~~av 86 (143)
T 3t8r_A 28 CISLKSI---A--EENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEEISAGDIIRLL 86 (143)
T ss_dssp CEEHHHH---H--HHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGGCBHHHHHHHH
T ss_pred CcCHHHH---H--HHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcccCCHHHHHHHh
Confidence 4666665 3 236679999999999999999999999988875565555444445555443
No 51
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=28.86 E-value=1.4e+02 Score=21.96 Aligned_cols=66 Identities=11% Similarity=0.205 Sum_probs=48.3
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLAS 275 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~ 275 (287)
.||+.+-.++..|... +++...+|=+.. --+..++...|..+.+.++|...++..+.....+.++.
T Consensus 26 ~l~~~~~~iL~~l~~~-------~~~~~~ela~~l-----~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~ 91 (138)
T 3bpv_A 26 NLTDAQVACLLRIHRE-------PGIKQDELATFF-----HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTR 91 (138)
T ss_dssp TCCHHHHHHHHHHHHS-------TTCBHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHc-------CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECH
Confidence 4788888888877652 467777774443 35899999999999999999988766544445555554
No 52
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.65 E-value=1.1e+02 Score=22.45 Aligned_cols=59 Identities=14% Similarity=0.258 Sum_probs=47.7
Q ss_pred HhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCC
Q 023087 196 LQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSD 264 (287)
Q Consensus 196 L~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~ 264 (287)
...||+.+..+|+.|.+. +..|+..++|-+.+. =+..++...|+-+..-++|+..++..
T Consensus 15 ~~~Lt~~q~~Vl~~I~~~-----g~~gi~qkeLa~~~~-----l~~~tvt~iLk~LE~kglIkr~~~~~ 73 (91)
T 2dk5_A 15 MKGSDNQEKLVYQIIEDA-----GNKGIWSRDVRYKSN-----LPLTEINKILKNLESKKLIKAVKSVA 73 (91)
T ss_dssp CCCSCSSHHHHHHHHHHH-----CTTCEEHHHHHHHTT-----CCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred hcCCCHHHHHHHHHHHHc-----CCCCcCHHHHHHHHC-----CCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 467899999999999876 457999998855443 37888999999999999999776643
No 53
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=26.70 E-value=1.3e+02 Score=22.29 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=48.1
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCC
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLA 274 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~ 274 (287)
.||+.+-.++..|... .+.|++..+|=+. +--+..++-..+..+.+.++|...+++.+.-...|-++
T Consensus 28 ~lt~~~~~vL~~l~~~-----~~~~~t~~ela~~-----l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT 94 (139)
T 3eco_A 28 DITNEQGHTLGYLYAH-----QQDGLTQNDIAKA-----LQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp TCCHHHHHHHHHHHHS-----TTTCEEHHHHHHH-----HTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred CCCHHHHHHHHHHHhc-----CCCCcCHHHHHHH-----hCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEEC
Confidence 4888888888888654 2357888877433 44588999999999999999998877654444555554
No 54
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=26.42 E-value=53 Score=23.52 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=31.8
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HHhhccHHHHHHHhhh
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRE-RFLVSSQVTLNSHLTE 250 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e-~fi~sse~~lr~~L~E 250 (287)
.||++...|+.+|+++. ..-++.++|++..-. +.- .++.+++.++..
T Consensus 22 ~Lt~~E~~lL~~L~~~~-----g~~vsr~~L~~~vw~~~~~-~~~~~l~~~I~r 69 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNM-----NRVMTREELLSNVWKYDEA-VETNVVDVYIRY 69 (96)
T ss_dssp ECCHHHHHHHHHHHHTT-----TSCBCHHHHHHHHSSSCSS-CCTHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHhCC-----CeeEcHHHHHHHHcCCCCC-CCcchHHHHHHH
Confidence 58999999999998772 345889999888742 222 234555554443
No 55
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14
Probab=25.47 E-value=42 Score=27.44 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=24.4
Q ss_pred EEEEeccchHHHHHHHHHhhcCCCcEEEEeccC
Q 023087 8 LLMYGFGSKKALLEDFASTALTEYSVVVINGYL 40 (287)
Q Consensus 8 lL~YG~GSKr~lL~~Fa~~~l~~~~~vvvnGy~ 40 (287)
|+++|.|+-..-...+++.....+.+++++|..
T Consensus 66 v~~HG~~~~~~~~~~~~~~l~~~~~v~~~~~d~ 98 (251)
T 2r8b_A 66 VLLHGTGGDENQFFDFGARLLPQATILSPVGDV 98 (251)
T ss_dssp EEECCTTCCHHHHHHHHHHHSTTSEEEEECCSE
T ss_pred EEEeCCCCCHhHHHHHHHhcCCCceEEEecCCc
Confidence 678888888887777776665667788886543
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=24.94 E-value=1.6e+02 Score=29.89 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=31.6
Q ss_pred CceEEEEEEcCCCcC-CCC----hhHHHHHHHHhcCCCeEEEEeecCCCCc-cccCcccccccccEEEEeCCC
Q 023087 99 DYFVCVVIHNIDGPG-LRD----SETQQHLGRIAFCSHIRMIASIDHVNAP-LLWDKKMVHTQFNWHWYHVPT 165 (287)
Q Consensus 99 ~~~l~lvIHnIDg~~-LR~----~~~q~~La~La~~~~I~lIaSiDhinap-lLWd~~~~~~~fnf~~~d~tT 165 (287)
..+.+|+|-.||.-. -+. ..++..|..+..-..+.+|++.-..... +.-|.... ++|.-+..+-.|
T Consensus 262 ~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~~~~d~aL~-rRf~~i~l~~p~ 333 (854)
T 1qvr_A 262 QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIEKDPALE-RRFQPVYVDEPT 333 (854)
T ss_dssp CSSEEEEECCC-------------------HHHHHTTCCCEEEEECHHHHHHHTTCTTTC-SCCCCEEECCCC
T ss_pred CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEecCchHHhhhccCHHHH-hCCceEEeCCCC
Confidence 346788877777532 111 2344556666666788888876433111 11244555 788876655444
No 57
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=24.67 E-value=99 Score=23.45 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=32.5
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhh
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTE 250 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~E 250 (287)
.||++...|+.+|++. ...-++.++|++.+-.+=-..++.+++..+..
T Consensus 43 ~Lt~~E~~LL~~L~~~-----~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~r 90 (121)
T 2hwv_A 43 ELTHREFELLYYLAKH-----IGQVMTREHLLQTVWGYDYFGDVRTVDVTVRR 90 (121)
T ss_dssp ECCHHHHHHHHHHHHT-----TTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHc-----CCeEEcHHHHHHHHcCCCCCCCccHHHHHHHH
Confidence 5899999999999876 24568899999888432222355565555443
No 58
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni}
Probab=24.21 E-value=1.2e+02 Score=24.04 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=10.8
Q ss_pred CCceEEEEEEcCCC
Q 023087 98 NDYFVCVVIHNIDG 111 (287)
Q Consensus 98 ~~~~l~lvIHnIDg 111 (287)
...+++|+=|++=|
T Consensus 87 ~~~~~~l~G~S~Gg 100 (272)
T 3fsg_A 87 GARRFILYGHSYGG 100 (272)
T ss_dssp TTCCEEEEEEEHHH
T ss_pred CCCcEEEEEeCchH
Confidence 34679999999865
No 59
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=23.72 E-value=2.2e+02 Score=20.98 Aligned_cols=66 Identities=8% Similarity=0.151 Sum_probs=49.4
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLAS 275 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~ 275 (287)
.||+.+-.++..|... +++...+|-+. +--+..++...+..+.+.++|...++..+.....+.++.
T Consensus 30 ~l~~~~~~iL~~l~~~-------~~~~~~~la~~-----l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~ 95 (145)
T 2a61_A 30 GITPAQFDILQKIYFE-------GPKRPGELSVL-----LGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITR 95 (145)
T ss_dssp TCCHHHHHHHHHHHHH-------CCBCHHHHHHH-----HTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHc-------CCCCHHHHHHH-----HCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECH
Confidence 4888888888888764 46778777443 345889999999999999999988766555445555543
No 60
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=23.48 E-value=2.2e+02 Score=20.81 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=49.0
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLAS 275 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~ 275 (287)
.||+.+-.++..|.+. +++...+|-+. +--+..++...|..+.+.++|...++..+.....+.++.
T Consensus 35 ~l~~~~~~iL~~l~~~-------~~~t~~ela~~-----l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~ 100 (140)
T 2nnn_A 35 GLTPTQWAALVRLGET-------GPCPQNQLGRL-----TAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSP 100 (140)
T ss_dssp CCCHHHHHHHHHHHHH-------SSBCHHHHHHH-----TTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECH
T ss_pred CCCHHHHHHHHHHHHc-------CCCCHHHHHHH-----HCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECH
Confidence 5888888888888765 36777777433 345889999999999999999987766544445555544
No 61
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.32 E-value=1.1e+02 Score=22.96 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=47.4
Q ss_pred HhhcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCC
Q 023087 196 LQSLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHS 263 (287)
Q Consensus 196 L~SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~ 263 (287)
++.||+..+-||++|.+. ...|+--++|-.++-= +...+...|+-+-.-++|+..++.
T Consensus 32 ~~~Lt~~E~lVy~~I~~a-----Gn~GIw~kdL~~~tnL-----~~~~vtkiLK~LE~k~lIK~Vksv 89 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDA-----GNKGIWSRDVRYKSNL-----PLTEINKILKNLESKKLIKAVKSV 89 (95)
T ss_dssp CCSCSHHHHHHHHHHHHH-----TTSCEEHHHHHHHHTC-----CHHHHHHHHHHHHHHTSEEEECCS
T ss_pred hcCCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHhCC-----CHHHHHHHHHHHHhCCCEEEecCc
Confidence 468999999999999887 4689999988655542 567788899999999999988754
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.12 E-value=1.3e+02 Score=35.93 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=76.2
Q ss_pred ccCCccEEEEe-ccc-hHHHHHHHHHhhcCCCcEEEEeccCCCCCHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCC
Q 023087 2 LRCGFGLLMYG-FGS-KKALLEDFASTALTEYSVVVINGYLQSINIKQVVITLAEVLWNQCKSKRKTPSGNLPRAQQPFN 79 (287)
Q Consensus 2 L~~GFnlL~YG-~GS-Kr~lL~~Fa~~~l~~~~~vvvnGy~p~~~~k~il~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
|..|.++|+.| -|+ |.-++.++..+ +.+.+++.|| |....+..++...+...+ ..++.+. +|. .
T Consensus 1301 l~~~~pvLL~GptGtGKT~li~~~L~~-l~~~~~~~in-fS~~Tta~~l~~~~e~~~----e~~~~~~-~G~------~- 1366 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMTLTSTLRA-FPDFEVVSLN-FSSATTPELLLKTFDHHC----EYKRTPS-GET------V- 1366 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHHHHHHGGG-CTTEEEEEEC-CCTTCCHHHHHHHHHHHE----EEEECTT-SCE------E-
T ss_pred HHCCCcEEEECCCCCCHHHHHHHHHHh-CCCCceEEEE-eeCCCCHHHHHHHHhhcc----eEEeccC-CCc------c-
Confidence 56889999999 565 44477776643 3444566666 455667777666664322 1110000 000 0
Q ss_pred CCcHHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHh-----------------cCCCeEEEEeecCCC
Q 023087 80 SRSMDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIA-----------------FCSHIRMIASIDHVN 142 (287)
Q Consensus 80 ~~~~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La-----------------~~~~I~lIaSiDhin 142 (287)
-. ......+++++|-.|+-|..=...+|..++.|- .++++.+||++-...
T Consensus 1367 -----------~~--p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A 1367 -----------LR--PTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPT 1433 (3245)
T ss_dssp -----------EE--ESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTT
T ss_pred -----------cC--CCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCC
Confidence 00 000244678888888877664444444444432 257889999997764
Q ss_pred ----CccccCcccccccccEEEEeCC
Q 023087 143 ----APLLWDKKMVHTQFNWHWYHVP 164 (287)
Q Consensus 143 ----aplLWd~~~~~~~fnf~~~d~t 164 (287)
.++ +.... +.|+.++.+-.
T Consensus 1434 ~gGr~~l--~~Rf~-r~F~vi~i~~p 1456 (3245)
T 3vkg_A 1434 DAGRVQL--THRFL-RHAPILLVDFP 1456 (3245)
T ss_dssp STTCCCC--CHHHH-TTCCEEECCCC
T ss_pred CCCCccC--CHHHH-hhceEEEeCCC
Confidence 333 56666 88998766544
No 63
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=22.71 E-value=2e+02 Score=20.00 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=49.3
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCc-eEEEEeCCHH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQ-DCFYIPLASE 276 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~-e~l~Ip~~~~ 276 (287)
.||+....++..|... ++++..+|-+.. --+..++...|..+.+.++|...++.++. -++.+.....
T Consensus 17 ~l~~~~~~il~~l~~~-------~~~s~~ela~~l-----~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~ 84 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLER-------GGMRVSEIAREL-----DLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPE 84 (109)
T ss_dssp CCCHHHHHHHHHHHHH-------CCBCHHHHHHHH-----TCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHH
T ss_pred CCCHHHHHHHHHHHHc-------CCCCHHHHHHHH-----CCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHH
Confidence 4788888999888654 457777774443 45899999999999999999987764443 4555554443
Q ss_pred H
Q 023087 277 A 277 (287)
Q Consensus 277 ~ 277 (287)
+
T Consensus 85 ~ 85 (109)
T 1sfx_A 85 K 85 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 64
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=22.61 E-value=1.9e+02 Score=22.00 Aligned_cols=65 Identities=9% Similarity=0.176 Sum_probs=47.2
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCC
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLA 274 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~ 274 (287)
.||+.+-.++..|.+. +++...+|=+. +--+..++...+..+.+.++|...++..+.-...+.++
T Consensus 41 ~lt~~~~~iL~~l~~~-------~~~t~~ela~~-----l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT 105 (154)
T 2eth_A 41 DMKTTELYAFLYVALF-------GPKKMKEIAEF-----LSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT 105 (154)
T ss_dssp HSBHHHHHHHHHHHHH-------CCBCHHHHHHH-----TTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHc-------CCCCHHHHHHH-----HCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEEC
Confidence 4788888888888765 36777777333 34588999999999999999998876533333444444
No 65
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=22.31 E-value=1.2e+02 Score=23.26 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=50.6
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEee---C--CCCc---eEEE
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRR---H--SDGQ---DCFY 270 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k---~--~~G~---e~l~ 270 (287)
|++..+.|...|.+. ..+++.+|=+..- -|+.+.+..|+.+.+.++|...+ + .-|- -+++
T Consensus 3 ld~~d~~il~~L~~~-------~~~s~~ela~~lg-----~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~ 70 (144)
T 2cfx_A 3 LDQIDLNIIEELKKD-------SRLSMRELGRKIK-----LSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVE 70 (144)
T ss_dssp CCHHHHHHHHHHHHC-------SCCCHHHHHHHHT-----CCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHc-------CCCCHHHHHHHHC-----cCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEE
Confidence 677788777777432 4578888754443 38999999999999999997543 1 1232 4566
Q ss_pred EeCCHHHHHHHHHHh
Q 023087 271 IPLASEALEKLLSEI 285 (287)
Q Consensus 271 Ip~~~~~l~~iLe~l 285 (287)
+-++.+.++++.+.+
T Consensus 71 v~~~~~~~~~~~~~l 85 (144)
T 2cfx_A 71 ATVKNADYERFKSYI 85 (144)
T ss_dssp EEEGGGCHHHHHHHH
T ss_pred EEECcccHHHHHHHH
Confidence 666655566666554
No 66
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=22.15 E-value=60 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHh
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHL 248 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L 248 (287)
.||++...|+.+|+++. ..-++.++|++.+-.+=-..++.+++.+.
T Consensus 28 ~Lt~~e~~lL~~L~~~~-----g~~vsr~~L~~~vw~~~~~~~~~~l~~~I 73 (102)
T 3zq7_A 28 HLTPIEFRLLAVLLNNA-----GKVLTQRQLLNQVWGPNAVEHSHYLRIYM 73 (102)
T ss_dssp CCCHHHHHHHHHHHHTT-----TCEEEHHHHHHHHTSSSCSTTHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHCC-----CeeECHHHHHHHhcCCCCCCccchHHHHH
Confidence 58999999999998762 34478888888774321123444444444
No 67
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.71 E-value=4.9e+02 Score=24.20 Aligned_cols=106 Identities=8% Similarity=0.050 Sum_probs=55.4
Q ss_pred ceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCccccCcccccccccEEEEeCCCCCCccccccc--ch
Q 023087 100 YFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAPLLWDKKMVHTQFNWHWYHVPTFAPYKVEGMF--FP 177 (287)
Q Consensus 100 ~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinaplLWd~~~~~~~fnf~~~d~tT~~pY~~E~~~--~~ 177 (287)
.+-+|+|-.||.-. ...|..|-....-..|.+|++.. .|...-.+.... +++.-+ .+.|++.|-.. ..
T Consensus 106 ~~~iLfIDEI~~l~---~~~q~~LL~~le~~~v~lI~att-~n~~~~l~~aL~-sR~~v~-----~l~~l~~edi~~il~ 175 (447)
T 3pvs_A 106 RRTILFVDEVHRFN---KSQQDAFLPHIEDGTITFIGATT-ENPSFELNSALL-SRARVY-----LLKSLSTEDIEQVLT 175 (447)
T ss_dssp CCEEEEEETTTCC---------CCHHHHHTTSCEEEEEES-SCGGGSSCHHHH-TTEEEE-----ECCCCCHHHHHHHHH
T ss_pred CCcEEEEeChhhhC---HHHHHHHHHHHhcCceEEEecCC-CCcccccCHHHh-CceeEE-----eeCCcCHHHHHHHHH
Confidence 46788899998743 23455444444457788887652 122222345555 666522 26666655321 11
Q ss_pred hhhhc-------CCccchhhHHHHHHhhcCHhHHHHHHHHHHHHh
Q 023087 178 LILAH-------GSSAQTAKTAAIVLQSLTPNAQSVFKILAEYQL 215 (287)
Q Consensus 178 ~l~~~-------~~~~~~~~g~~~VL~SLt~nar~lf~lLa~~QL 215 (287)
..+.. .....+.+.+..+.+.-.-|.|.+..+|-..-.
T Consensus 176 ~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 176 QAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMAD 220 (447)
T ss_dssp HHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 11111 112234556677777767788888888765443
No 68
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=21.66 E-value=1.3e+02 Score=22.57 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=40.8
Q ss_pred cCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCC
Q 023087 199 LTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSD 264 (287)
Q Consensus 199 Lt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~ 264 (287)
||+.+-.++..|... +|+...+|=+. +--+..++-..+..+.+.++|...+++.
T Consensus 35 lt~~~~~iL~~l~~~-------~~~t~~eLa~~-----l~~~~~~vs~~l~~L~~~Glv~r~~~~~ 88 (143)
T 3oop_A 35 VTPEQWSVLEGIEAN-------EPISQKEIALW-----TKKDTPTVNRIVDVLLRKELIVREISTE 88 (143)
T ss_dssp SCHHHHHHHHHHHHH-------SSEEHHHHHHH-----HTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCHHHHHHHHHHHHc-------CCcCHHHHHHH-----HCCCHhhHHHHHHHHHHCCCeeccCCCc
Confidence 788888888888665 46777777433 4568999999999999999999877653
No 69
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=21.12 E-value=1.1e+02 Score=22.94 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=47.7
Q ss_pred hcCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHhhccHHHHHHHhhhhcccceEEEeeCCCCceEEEEeCCHH
Q 023087 198 SLTPNAQSVFKILAEYQLSHPDEEGMPIDTLYATSRERFLVSSQVTLNSHLTEFKDHELVKTRRHSDGQDCFYIPLASE 276 (287)
Q Consensus 198 SLt~nar~lf~lLa~~QL~~~~~~gv~~~~L~~~~~e~fi~sse~~lr~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~ 276 (287)
-||+.+..++..|... +++...+|-+. +--+..++...|..+.+.++|...+++.+.-...+.++..
T Consensus 34 ~l~~~~~~iL~~l~~~-------~~~~~~ela~~-----l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~ 100 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDE-------SPVNVKKVVTE-----LALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 100 (142)
T ss_dssp TCCHHHHHHHHHHHHS-------SEEEHHHHHHH-----TTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHH
T ss_pred CCCHHHHHHHHHHHHc-------CCcCHHHHHHH-----HCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChH
Confidence 4788888888877642 35677776433 3347889999999999999999888764444455655544
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=20.91 E-value=1.9e+02 Score=27.17 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHHHHhcccccCCCceEEEEEEcCCCcCCCChhHHHHHHHHhcCCCeEEEEeecCCCCc--cccCcccccccccEEE
Q 023087 83 MDDLFAFLDGSELKENDYFVCVVIHNIDGPGLRDSETQQHLGRIAFCSHIRMIASIDHVNAP--LLWDKKMVHTQFNWHW 160 (287)
Q Consensus 83 ~~~l~~~i~~~~~~~~~~~l~lvIHnIDg~~LR~~~~q~~La~La~~~~I~lIaSiDhinap--lLWd~~~~~~~fnf~~ 160 (287)
+..+++.+.. ..+.+|+| || ...+|..|-....-..+.+||+....... +--|.... ++|+-+.
T Consensus 256 ~~~~~~~~~~------~~~~iLfi---D~----~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~-~Rf~~i~ 321 (468)
T 3pxg_A 256 LKKVMDEIRQ------AGNIILFI---DA----AIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALE-RRFQPIQ 321 (468)
T ss_dssp HHHHHHHHHT------CCCCEEEE---CC------------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHH-HSEEEEE
T ss_pred HHHHHHHHHh------cCCeEEEE---eC----chhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHH-HhCccce
Confidence 4456666553 23455554 42 23455666655567789999998766421 11255555 7888655
Q ss_pred EeCC
Q 023087 161 YHVP 164 (287)
Q Consensus 161 ~d~t 164 (287)
.+..
T Consensus 322 v~~p 325 (468)
T 3pxg_A 322 VDQP 325 (468)
T ss_dssp CCCC
T ss_pred eCCC
Confidence 4444
No 71
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=20.43 E-value=77 Score=25.83 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=29.5
Q ss_pred ccHHHHH----HHhhhhcccceEEEeeCCCCceEEEEeCCHHHHHHHHHHhhC
Q 023087 239 SSQVTLN----SHLTEFKDHELVKTRRHSDGQDCFYIPLASEALEKLLSEINQ 287 (287)
Q Consensus 239 sse~~lr----~~L~EF~DH~li~~~k~~~G~e~l~Ip~~~~~l~~iLe~l~~ 287 (287)
+|.++|+ +.|+|.+ ..+.....-.++.+ .+|+..+.++++|+++.|
T Consensus 50 ss~~Tlk~~Ie~~L~~~v-pev~~V~~v~~~~e--~l~L~~~~v~~~L~~iRP 99 (154)
T 2z51_A 50 SSTMTMKMGIERRLMEKI-PEIVAVEALPDEET--GLELNEENIEKVLEEIRP 99 (154)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCCEEEECCSSCC--SCCSSHHHHHHHHHHHGG
T ss_pred ccHhHHHHHHHHHHHHhC-CCceEEEEccCchh--hhHHHHHHHHHHHHHHHH
Confidence 4555565 6788777 33433333233333 468999999999998863
No 72
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=20.40 E-value=3e+02 Score=21.28 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCcCCCChhHHHHHHHHh-cC--CCeEEEEeecCC
Q 023087 101 FVCVVIHNIDGPGLRDSETQQHLGRIA-FC--SHIRMIASIDHV 141 (287)
Q Consensus 101 ~l~lvIHnIDg~~LR~~~~q~~La~La-~~--~~I~lIaSiDhi 141 (287)
+-+||+-.++..++ ++..+..|..+. .. .+..+|.|..+.
T Consensus 101 ~~llilDE~~~~~~-~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 101 SPVLVLDDLGSERL-SDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp CSEEEEETCSSSCC-CHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCEEEEeCCCCCcC-CHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 34677888775555 445555555443 21 456777776554
Done!